Query 043389
Match_columns 223
No_of_seqs 138 out of 763
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 07:25:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043389.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043389hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3frt_A Charged multivesicular 100.0 1.1E-50 3.8E-55 338.4 12.1 213 7-222 4-218 (218)
2 2gd5_A Charged multivesicular 100.0 8.1E-45 2.8E-49 296.4 6.1 178 4-185 2-179 (179)
3 3eab_G CHMP1B; spastin, MIT, E 98.9 2.7E-11 9.3E-16 77.8 -2.7 49 160-222 2-50 (50)
4 3um3_B Charged multivesicular 98.9 3.7E-09 1.3E-13 77.9 7.7 74 116-189 2-81 (104)
5 3frt_A Charged multivesicular 98.6 3.6E-08 1.2E-12 81.9 4.1 154 9-171 2-164 (218)
6 4abm_A Charged multivesicular 97.9 0.00038 1.3E-08 48.5 12.2 74 14-92 3-77 (79)
7 2v6x_B DOA4-independent degrad 97.7 7E-06 2.4E-10 53.2 0.3 47 177-223 3-53 (54)
8 2gd5_A Charged multivesicular 97.4 7.9E-05 2.7E-09 59.8 3.7 148 21-171 11-164 (179)
9 3frr_A Uncharacterized protein 97.3 0.018 6.1E-07 46.5 16.1 167 2-175 1-179 (191)
10 2luh_B Vacuolar protein-sortin 97.0 0.00045 1.5E-08 45.1 2.7 54 117-170 1-54 (59)
11 3ggy_A Increased sodium tolera 95.2 0.99 3.4E-05 36.3 15.5 160 13-176 7-185 (193)
12 2hh7_A Hypothetical protein CS 91.5 0.73 2.5E-05 34.2 7.2 49 69-117 9-57 (119)
13 2xze_Q Charged multivesicular 90.8 0.071 2.4E-06 31.9 0.9 13 210-222 28-40 (40)
14 3ggz_E Vacuolar protein-sortin 88.7 0.23 7.9E-06 27.4 1.8 16 207-222 14-29 (29)
15 2lxm_B Charged multivesicular 88.2 0.43 1.5E-05 30.8 3.1 38 133-173 1-38 (57)
16 3aai_A Copper homeostasis oper 81.6 4.3 0.00015 28.7 6.2 49 69-117 13-62 (94)
17 3um3_B Charged multivesicular 76.3 13 0.00045 26.7 7.5 54 127-183 9-64 (104)
18 3twe_A Alpha4H; unknown functi 73.4 1.5 5.2E-05 23.0 1.3 14 209-222 9-22 (27)
19 4adz_A CSOR; transcription, co 73.3 6.1 0.00021 29.8 5.2 51 67-117 49-99 (136)
20 3mq9_A Bone marrow stromal ant 67.4 60 0.0021 28.6 11.5 24 7-30 367-390 (471)
21 1t3j_A Mitofusin 1; coiled coi 50.7 38 0.0013 23.9 5.6 30 13-42 43-72 (96)
22 1upk_A MO25 protein; transfera 46.7 70 0.0024 27.7 7.8 63 1-69 3-77 (341)
23 2w6b_A RHO guanine nucleotide 41.5 64 0.0022 20.3 6.1 40 14-53 14-53 (56)
24 2ke4_A CDC42-interacting prote 37.0 1.1E+02 0.0036 21.5 8.8 53 21-73 19-71 (98)
25 1naf_A ADP-ribosylation factor 33.7 1E+02 0.0036 23.5 6.2 96 72-173 36-140 (158)
26 2avr_X Adhesion A; antiparalle 33.7 1.4E+02 0.0047 21.8 10.1 97 22-131 7-103 (119)
27 2l5g_B Putative uncharacterize 30.7 87 0.003 18.6 5.2 27 23-49 8-34 (42)
28 4fm3_A Uncharacterized hypothe 29.0 1.5E+02 0.0052 20.8 9.4 58 9-67 3-61 (98)
29 1gp8_A Protein (scaffolding pr 28.7 36 0.0012 19.9 2.0 25 42-66 12-36 (40)
30 1yzm_A FYVE-finger-containing 28.3 1.1E+02 0.0037 18.9 6.3 40 38-77 9-48 (51)
31 1a92_A Delta antigen; leucine 28.3 1E+02 0.0035 18.8 4.1 32 13-45 4-35 (50)
32 2r6a_C DNAG primase, helicase 26.9 1.5E+02 0.0052 20.9 6.0 38 36-73 103-140 (143)
33 3uly_B Charged multivesicular 26.6 66 0.0023 21.2 3.3 20 155-174 8-27 (69)
34 3ghg_A Fibrinogen alpha chain; 26.2 3.8E+02 0.013 24.6 13.6 39 12-50 52-90 (562)
35 1oxz_A ADP-ribosylation factor 25.6 2.4E+02 0.0083 22.0 7.5 75 99-177 77-160 (186)
36 2p22_A Suppressor protein STP2 25.4 1.1E+02 0.0039 23.7 5.2 46 3-48 35-80 (174)
37 1wrd_A TOM1, target of MYB pro 25.2 1.1E+02 0.0038 21.5 4.7 34 103-136 18-55 (103)
38 1z0k_B FYVE-finger-containing 22.8 1.7E+02 0.0057 19.2 6.8 38 39-76 28-65 (69)
39 2wh0_Q Pkcev3, protein kinase 22.4 78 0.0027 16.9 2.5 17 36-52 11-27 (31)
No 1
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-50 Score=338.42 Aligned_cols=213 Identities=26% Similarity=0.423 Sum_probs=140.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 7 KRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGV 86 (223)
Q Consensus 7 ~~~~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~~L~~v 86 (223)
+++||+|++|+|++.||+++|+|+|++.+|++++++++.+||+++++||.++|||||+++||.|+++.+|+.++++|++|
T Consensus 4 ~~~~p~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV 83 (218)
T 3frt_A 4 QEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSV 83 (218)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhcccCCCCCcHHHHHHHHHH
Q 043389 87 SLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQ 166 (223)
Q Consensus 87 ~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~~~~d~~~~eee~d~l~~q 166 (223)
+++|+++.++.+++++|++++++|+.+|+.||+|+|+.+|++|++|++++|++++||+|+|++.++++++++|+|++|++
T Consensus 84 ~~rlqt~~s~~~v~~sM~~st~~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~k 163 (218)
T 3frt_A 84 LMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDR 163 (218)
T ss_dssp HHHHHHHHHCC----CCCCCHHHHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888777889999999999
Q ss_pred HHHHhcchhhhhhccCCCCCCC-ccccchhhhhhhc-cCCCCCCcHHHHHHHHHHhhc
Q 043389 167 VLDEIGIDINQELVNAPSSTVA-APAVKGKVAQAEA-TGNDDGGIDSDLQARLDNLRR 222 (223)
Q Consensus 167 vldE~~~~~~~~l~~~P~~~~~-~~~~~~~~~~~~~-~~~~~~~~~d~l~~RL~~Lr~ 222 (223)
||+|+|. ++|+.+|+++.+ +|.+.+..+.++. ..++.++..+++.+||++||+
T Consensus 164 VldEi~~---~~l~~~p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~m~~rl~al~s 218 (218)
T 3frt_A 164 ILFEITA---GALGKAPSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSRLATLRS 218 (218)
T ss_dssp HHHTC-----------------------------------------------------
T ss_pred HHHHHhH---hHhhcCCCCCCCCCCCccccccccccccchhhHHHHHHHHHHHHHhcC
Confidence 9999985 456666654322 2211111011111 111223457889999999985
No 2
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=100.00 E-value=8.1e-45 Score=296.39 Aligned_cols=178 Identities=26% Similarity=0.454 Sum_probs=141.6
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 4 LFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQL 83 (223)
Q Consensus 4 ~Fg~~~~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~~L 83 (223)
+|++ |||+|++++|++.||+++|+|+|++.+|++++++++.+||+++++|+.++||+||+++||+|++..+|+.++++|
T Consensus 2 ~~~~-~~p~e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l 80 (179)
T 2gd5_A 2 AMAE-KPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHM 80 (179)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5654 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhcccCCCCCcHHHHHHH
Q 043389 84 QGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEEL 163 (223)
Q Consensus 84 ~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~~~~d~~~~eee~d~l 163 (223)
++|.++|+++.++..++++|+.++++|+.+|+.||+++|+++|++|+++++++++++++|+++|+++++++++++++|++
T Consensus 81 ~~v~~~lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~ 160 (179)
T 2gd5_A 81 NSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEME 160 (179)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988878899999999
Q ss_pred HHHHHHHhcchhhhhhccCCCC
Q 043389 164 VNQVLDEIGIDINQELVNAPSS 185 (223)
Q Consensus 164 ~~qvldE~~~~~~~~l~~~P~~ 185 (223)
+++||+|+|+ ++||++|++
T Consensus 161 v~kVl~E~~~---~~l~~~P~~ 179 (179)
T 2gd5_A 161 IDRILFEITA---GALGKAPSK 179 (179)
T ss_dssp HHHTTCCC--------------
T ss_pred HHHHHHHhhH---hhcccCCCC
Confidence 9999999985 468877753
No 3
>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=98.93 E-value=2.7e-11 Score=77.78 Aligned_cols=49 Identities=29% Similarity=0.512 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhcchhhhhhccCCCCCCCccccchhhhhhhccCCCCCCcHHHHHHHHHHhhc
Q 043389 160 TEELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 222 (223)
Q Consensus 160 ~d~l~~qvldE~~~~~~~~l~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~RL~~Lr~ 222 (223)
||++++||+||+|+++..+||.+|.+.++.+ +. ..++|+|.+||++||+
T Consensus 2 Vd~Lm~qVaDE~Glel~~~L~~~~~~~~~~~--------~~------~~~eD~L~~RLaaLR~ 50 (50)
T 3eab_G 2 VDMLLQEMADEAGLDLNMELPQGQTGSVGTS--------VA------SAEQDELSQRLARLRD 50 (50)
T ss_dssp CCHHHHHHHHHTTCC---------CHHHHHH--------HH------HHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhCchHHhhcccccccccCCC--------CC------cccHHHHHHHHHHHhC
Confidence 6899999999999999999998876543211 01 1469999999999996
No 4
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=98.91 E-value=3.7e-09 Score=77.87 Aligned_cols=74 Identities=24% Similarity=0.425 Sum_probs=57.1
Q ss_pred cCChhHHHHHHHHHHHHHHHhHhHHHHHhhhhc--ccCCCCCcHHHHHHHHHHHHHHhcchhh----hhhccCCCCCCCc
Q 043389 116 QMNLPSLQKIMQEFERQNEKMEMVTEVMGDAID--DALEGDDEEEETEELVNQVLDEIGIDIN----QELVNAPSSTVAA 189 (223)
Q Consensus 116 ~m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~--~~~d~~~~eee~d~l~~qvldE~~~~~~----~~l~~~P~~~~~~ 189 (223)
.|++++|.++|+++.++++..+.|+++|+.+++ +.+|+++.++|++++.+..+++-.+++. ..||++|++.+|.
T Consensus 2 ~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~~~l~~~~~~~~~LP~vP~~~lp~ 81 (104)
T 3um3_B 2 NMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSIALPS 81 (104)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCcCCC
Confidence 589999999999999999999999999999874 3455556666777776666666555443 2488888877654
No 5
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=98.56 E-value=3.6e-08 Score=81.88 Aligned_cols=154 Identities=18% Similarity=0.248 Sum_probs=79.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHcCChHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 043389 9 KTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIK---KSAKQGQMGAVKVMAKDLIRT-RHQIEKFYKLKSQLQ 84 (223)
Q Consensus 9 ~~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK---~a~k~g~~~~ari~Ak~~vr~-rk~~~~l~~~~~~L~ 84 (223)
++|+..+++ .+|.-.|.|.+..+.|+|+..+++.+=| ..+|+--..+-. +..|. =+...+.-+...++-
T Consensus 2 ~~~~~~p~e---~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~----~~arilAkelVR~Rk~~~rl~ 74 (218)
T 3frt_A 2 HMQEKPPKE---LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQK----DVCIVLAKEMIRSRKAVSKLY 74 (218)
T ss_dssp ------CHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHHHHHH
Confidence 566666666 4666677777777777777776665544 334332211111 11111 122335556677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHH--HHHHHHHHHhH---hHHHHHhhhhcccCCCCCcHHH
Q 043389 85 GVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIM--QEFERQNEKME---MVTEVMGDAIDDALEGDDEEEE 159 (223)
Q Consensus 85 ~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~~~M--~ef~~e~~~~~---~~~e~m~~~l~~~~d~~~~eee 159 (223)
.+..+|++.....+...++..++..|+.+.+.| ..+...| .++..-|..+. +.-+++.+.|++.+|+..+.++
T Consensus 75 ~~kaqL~sV~~rlqt~~s~~~v~~sM~~st~~M--~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~ 152 (218)
T 3frt_A 75 ASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVM--KAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEE 152 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHCC----CCCCCHHHH--HHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCC
Confidence 888899998888888888888888888888887 6677776 66776666663 3334566778887765544455
Q ss_pred HHHHHHHHHHHh
Q 043389 160 TEELVNQVLDEI 171 (223)
Q Consensus 160 ~d~l~~qvldE~ 171 (223)
.+++++.+.+.+
T Consensus 153 ~eee~d~~v~kV 164 (218)
T 3frt_A 153 MEEEAEMEIDRI 164 (218)
T ss_dssp CTTSTTTHHHHH
T ss_pred chHHHHHHHHHH
Confidence 556666666554
No 6
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=97.89 E-value=0.00038 Score=48.53 Aligned_cols=74 Identities=11% Similarity=0.224 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 043389 14 LLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIE-KFYKLKSQLQGVSLRIQT 92 (223)
Q Consensus 14 ~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~-~l~~~~~~L~~v~~ql~~ 92 (223)
.+++++..||.+...|++....|+..-......+|+++ .+|.. -|..++|+||+++ .|.++.+++++++.++.+
T Consensus 3 ~~~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~knK~----~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~ 77 (79)
T 4abm_A 3 MEQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKNKR----AALQALKRKKRYEKQLAQIDGTLSTIEFQREA 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566668999999999999999999999999999988 56643 5666888888776 556999999999988764
No 7
>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=97.67 E-value=7e-06 Score=53.18 Aligned_cols=47 Identities=30% Similarity=0.548 Sum_probs=24.3
Q ss_pred hhhccCCCCCCCccccchh---hhhhhccCCC-CCCcHHHHHHHHHHhhcC
Q 043389 177 QELVNAPSSTVAAPAVKGK---VAQAEATGND-DGGIDSDLQARLDNLRRM 223 (223)
Q Consensus 177 ~~l~~~P~~~~~~~~~~~~---~~~~~~~~~~-~~~~~d~l~~RL~~Lr~~ 223 (223)
.+|.++|++....+....+ +++++..+++ ....+|||++||++||++
T Consensus 3 ~qL~~aP~~~~~~~~~~~~~~~va~a~g~~~~~~~~~ddDLQARLdsLRR~ 53 (54)
T 2v6x_B 3 HMLQSTPQNLVSNAPIAETAMGIAEPIGAGSEFHGNPDDDLQARLNTLKKQ 53 (54)
T ss_dssp CCCCCCCHHHHTTCCCGGGGSSSSCC----------CCHHHHHHHHHHHCC
T ss_pred chhhhccccccccccccccccccccccccCCCCCCCchHHHHHHHHHhccC
Confidence 4577777654333222222 2333322111 134799999999999974
No 8
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=97.44 E-value=7.9e-05 Score=59.85 Aligned_cols=148 Identities=18% Similarity=0.231 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 21 MLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTR-HQIEKFYKLKSQLQGVSLRIQTLKSTQAM 99 (223)
Q Consensus 21 ~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~r-k~~~~l~~~~~~L~~v~~ql~~a~~~~~~ 99 (223)
.||...+.|.+.++.|+++..+++.+-|+....= ..+++--.....|.. +...+.-+...+|.....+|++.....+.
T Consensus 11 ~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~I-kka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt 89 (179)
T 2gd5_A 11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSV-KDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN 89 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999998887776543211 122221111222211 12334446677788888999999998888
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHH--HHHHHHHHHh---HhHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHh
Q 043389 100 GEAMKGVTKAMGQMNRQMNLPSLQKIM--QEFERQNEKM---EMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEI 171 (223)
Q Consensus 100 ~~am~~~~~~mk~~n~~m~~~kv~~~M--~ef~~e~~~~---~~~~e~m~~~l~~~~d~~~~eee~d~l~~qvldE~ 171 (223)
..++..++.+|+..++.| ..+...| +++..-|..+ -..-++++++|++.+++..++++.+++++.+++.+
T Consensus 90 ~~~~~~v~~am~~~~~~M--~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kV 164 (179)
T 2gd5_A 90 QLAVLRVAGSLQKSTEVM--KAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRI 164 (179)
T ss_dssp HHHHHHHTSSCCCCSHHH--HTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHH
Confidence 888888888888887776 4455555 5555555555 44444557889988876545556666666666555
No 9
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=97.31 E-value=0.018 Score=46.55 Aligned_cols=167 Identities=11% Similarity=0.138 Sum_probs=107.5
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 2 SFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKS 81 (223)
Q Consensus 2 ~~~Fg~~~~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~ 81 (223)
|.+||++.++ .+++..|+.++..|.=-.++-....++...+|-..++.|..+.||+-+.++||-.+...=|.-+..
T Consensus 1 ~~mf~~~~~~----~K~K~~Lklai~Rl~ll~~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilEl 76 (191)
T 3frr_A 1 GHMLGSGFKA----ERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILEL 76 (191)
T ss_dssp ---CCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689987664 366778899999988888888888899999999999999999999999999999998776665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhc-CChhHHHHHHHHH----HHHHHHh------HhHHHHHhhhhcc
Q 043389 82 QLQGVSLRIQTLKSTQAMGEAMKGVTKAMG-QMNRQ-MNLPSLQKIMQEF----ERQNEKM------EMVTEVMGDAIDD 149 (223)
Q Consensus 82 ~L~~v~~ql~~a~~~~~~~~am~~~~~~mk-~~n~~-m~~~kv~~~M~ef----~~e~~~~------~~~~e~m~~~l~~ 149 (223)
-.+-+..++.....+...-..++.+...+= ...+. -+++++..+=+-| .+++... +-++..+-.-++.
T Consensus 77 yCelL~~R~~li~~~k~cp~~l~EAvsslIyAa~R~~~elpEL~~ir~~l~~KyGkeF~~~a~e~~~~~Vn~~iv~kLs~ 156 (191)
T 3frr_A 77 YCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLCAKYSKEYGKLCRTNQIGTVNDRLMHKLSV 156 (191)
T ss_dssp HHHHHHHTHHHHHSCSSCCGGGHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCHHHHHHHHTTTTSCSCHHHHHHTCC
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCHHHHHHcCC
Confidence 555555555544433333333444333333 33443 5778887655444 4444432 1122222222222
Q ss_pred cCCCCCcHHHHHHHHHHHHHHhcchh
Q 043389 150 ALEGDDEEEETEELVNQVLDEIGIDI 175 (223)
Q Consensus 150 ~~d~~~~eee~d~l~~qvldE~~~~~ 175 (223)
. .-..+-++..+..|+.+++++.
T Consensus 157 ~---~P~~~lv~~yL~EIA~~y~V~w 179 (191)
T 3frr_A 157 E---APPKILVERYLIEIAKNYNVPY 179 (191)
T ss_dssp S---CCCHHHHHHHHHHHHHHHTCCC
T ss_pred C---CcCHHHHHHHHHHHHHHcCCCC
Confidence 1 1245677788888888887754
No 10
>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.00045 Score=45.06 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=45.5
Q ss_pred CChhHHHHHHHHHHHHHHHhHhHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHH
Q 043389 117 MNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDE 170 (223)
Q Consensus 117 m~~~kv~~~M~ef~~e~~~~~~~~e~m~~~l~~~~d~~~~eee~d~l~~qvldE 170 (223)
+|+.+|..+++++...++..+.|+++|+.+.+....++.++++++++++.+-+|
T Consensus 1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de 54 (59)
T 2luh_B 1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQE 54 (59)
T ss_dssp CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhcc
Confidence 578999999999999999999999999998775422245778899999888877
No 11
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=95.17 E-value=0.99 Score=36.31 Aligned_cols=160 Identities=10% Similarity=0.114 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 13 ELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQT 92 (223)
Q Consensus 13 e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~~L~~v~~ql~~ 92 (223)
...-+++..|+.++..|.=-.++-....+....+|-+.++.|..+.||+-+.++||-.+...=|.-+..-.+-+..++..
T Consensus 7 ~~~~KlK~~Lklai~Rl~llq~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~aR~~l 86 (193)
T 3ggy_A 7 PFTIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELLEILELYCELLLARVQV 86 (193)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557888999999999988888899999999999999999999999999999999999877665555555555555443
Q ss_pred HHH--------HHHHHHHHHHHHHHH-HHHHhcCChhHHHHHHHHH----HHHHHHh------HhHHHHHhhhhcccCCC
Q 043389 93 LKS--------TQAMGEAMKGVTKAM-GQMNRQMNLPSLQKIMQEF----ERQNEKM------EMVTEVMGDAIDDALEG 153 (223)
Q Consensus 93 a~~--------~~~~~~am~~~~~~m-k~~n~~m~~~kv~~~M~ef----~~e~~~~------~~~~e~m~~~l~~~~d~ 153 (223)
... ....-..++.+...+ =...+..+++.+..+=+-| .++|... ++-..++. -++..
T Consensus 87 l~~~~~e~~~~~k~cp~~l~EAvsslIyAa~R~~elpEL~~ir~~l~~KyGkeF~~~a~en~~gVn~kiv~-kLs~~--- 162 (193)
T 3ggy_A 87 INDISTEEQLVKEHMDDGINEAIRSLIYAILFVDEVKELSQLKDLMAWKINVEFVNGVIADHIDVPEKIIK-KCSPS--- 162 (193)
T ss_dssp HTTCCSHHHHHHHSSSSSHHHHHHHHHHHGGGCTTCTTHHHHHHHHHHHTCHHHHHHHHHHCTTCCHHHHH-HHSCC---
T ss_pred HHhhcccccccccCCCHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCHHHHHHHHhcCCCCCHHHHH-HcCCC---
Confidence 332 222333344443333 3334446888887554444 4444332 22222222 22221
Q ss_pred CCcHHHHHHHHHHHHHHhcchhh
Q 043389 154 DDEEEETEELVNQVLDEIGIDIN 176 (223)
Q Consensus 154 ~~~eee~d~l~~qvldE~~~~~~ 176 (223)
.-..+-++..+..|+.++|++.+
T Consensus 163 ~P~~elv~~yL~EIA~ey~V~w~ 185 (193)
T 3ggy_A 163 VPKEELVDLYLKEIAKTYDVPYS 185 (193)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCHH
T ss_pred CcCHHHHHHHHHHHHHHcCCCCC
Confidence 12456788888888888888664
No 12
>2hh7_A Hypothetical protein CSOR; 4-helix bundle, unknown function; 2.55A {Mycobacterium tuberculosis}
Probab=91.53 E-value=0.73 Score=34.22 Aligned_cols=49 Identities=14% Similarity=0.303 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 043389 69 TRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQM 117 (223)
Q Consensus 69 ~rk~~~~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m 117 (223)
+++...||.+...|+.+|..-|+.-.....+...+..+..++..++..+
T Consensus 9 kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~~~~~I 57 (119)
T 2hh7_A 9 KRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVM 57 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556789999999999999999988888888888888888887776443
No 13
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=90.78 E-value=0.071 Score=31.93 Aligned_cols=13 Identities=38% Similarity=0.511 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhhc
Q 043389 210 DSDLQARLDNLRR 222 (223)
Q Consensus 210 ~d~l~~RL~~Lr~ 222 (223)
..+|+.||++||+
T Consensus 28 i~~MqsRLaALRS 40 (40)
T 2xze_Q 28 LEAMQSRLATLRS 40 (40)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcC
Confidence 4569999999995
No 14
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=88.71 E-value=0.23 Score=27.42 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=14.0
Q ss_pred CCcHHHHHHHHHHhhc
Q 043389 207 GGIDSDLQARLDNLRR 222 (223)
Q Consensus 207 ~~~~d~l~~RL~~Lr~ 222 (223)
++.+|-|-+||.+||.
T Consensus 14 eekEDkLAqRLRALR~ 29 (29)
T 3ggz_E 14 DEKEDKLAQRLRALRG 29 (29)
T ss_pred chhhHHHHHHHHHHcC
Confidence 4679999999999994
No 15
>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}
Probab=88.18 E-value=0.43 Score=30.76 Aligned_cols=38 Identities=16% Similarity=0.248 Sum_probs=14.3
Q ss_pred HHHhHhHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHhcc
Q 043389 133 NEKMEMVTEVMGDAIDDALEGDDEEEETEELVNQVLDEIGI 173 (223)
Q Consensus 133 ~~~~~~~~e~m~~~l~~~~d~~~~eee~d~l~~qvldE~~~ 173 (223)
|+..+.|+++|+.+++.. +.++++++++++.+-+|...
T Consensus 1 ~e~a~EIqealsr~~g~~---diDEdEL~aELe~LeqE~~~ 38 (57)
T 2lxm_B 1 MEDANEINEALSRSYGTP---ELDEDDLEAELDALGDELLA 38 (57)
T ss_dssp ---------------CCC---CCCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHcCCCCCC---CCCHHHHHHHHHHHHHHHhh
Confidence 356788999999887633 24566777777777777643
No 16
>3aai_A Copper homeostasis operon regulatory protein; all alpha proteins, 4-helix bundle, transcription; 2.10A {Thermus thermophilus}
Probab=81.55 E-value=4.3 Score=28.66 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcC
Q 043389 69 TRHQIEKFYKLKSQLQGVSLRIQTLK-STQAMGEAMKGVTKAMGQMNRQM 117 (223)
Q Consensus 69 ~rk~~~~l~~~~~~L~~v~~ql~~a~-~~~~~~~am~~~~~~mk~~n~~m 117 (223)
+++...+|-+...|+.+|..-|+.-. ....+...+..+..++..++..+
T Consensus 13 k~~~l~RLkRieGQv~gI~rMiEe~~~~C~dIl~QlaAvr~Al~~~~~~i 62 (94)
T 3aai_A 13 REEARRRLLSAKGHLEGILRMLEDEKVYCVDVLKQLKAVEGALDRVGEMV 62 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567789999999999999998887 88888888888888888776544
No 17
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=76.32 E-value=13 Score=26.68 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=37.3
Q ss_pred HHHHHHHHHhHhHHHHHhhhhcccCC--CCCcHHHHHHHHHHHHHHhcchhhhhhccCC
Q 043389 127 QEFERQNEKMEMVTEVMGDAIDDALE--GDDEEEETEELVNQVLDEIGIDINQELVNAP 183 (223)
Q Consensus 127 ~ef~~e~~~~~~~~e~m~~~l~~~~d--~~~~eee~d~l~~qvldE~~~~~~~~l~~~P 183 (223)
+++..++...-...+=|+++|+..++ .+.+++|++++++.+.+|. +..++..++
T Consensus 9 e~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~---l~~~~l~~~ 64 (104)
T 3um3_B 9 DELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEE---LDKNLLEIS 64 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHH---HHHHhhccC
Confidence 44455555555566677888988774 3568899999999998875 445555443
No 18
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=73.43 E-value=1.5 Score=22.97 Aligned_cols=14 Identities=50% Similarity=0.608 Sum_probs=12.1
Q ss_pred cHHHHHHHHHHhhc
Q 043389 209 IDSDLQARLDNLRR 222 (223)
Q Consensus 209 ~~d~l~~RL~~Lr~ 222 (223)
+.+||+.||..||.
T Consensus 9 eledlqerlrklrk 22 (27)
T 3twe_A 9 ELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57899999999984
No 19
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=73.26 E-value=6.1 Score=29.84 Aligned_cols=51 Identities=12% Similarity=0.221 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 043389 67 IRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQM 117 (223)
Q Consensus 67 vr~rk~~~~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m 117 (223)
-.+++...||.+...|+.+|..-|+.-.....+...+..+..++..++..+
T Consensus 49 ~~Kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~v~~~I 99 (136)
T 4adz_A 49 KQKAEHLKRLRRIEGQIRGLQRMVDEDVYCIDILTQVSASTKALQSFALQL 99 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667789999999999999999988888888888888888888777655
No 20
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=67.44 E-value=60 Score=28.60 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=16.4
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHH
Q 043389 7 KRKTPAELLRENKRMLDKSIREIE 30 (223)
Q Consensus 7 ~~~~p~e~~r~~~~~lr~~~r~Ld 30 (223)
++.+|++.+++....++..+.++.
T Consensus 367 G~~t~eeal~~~~~~i~~~l~~~~ 390 (471)
T 3mq9_A 367 GRQTVDEALKDAQTRITAARDGLR 390 (471)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhH
Confidence 346888888887777666665553
No 21
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=50.72 E-value=38 Score=23.92 Aligned_cols=30 Identities=13% Similarity=0.333 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 13 ELLRENKRMLDKSIREIERERQGLQTQEKK 42 (223)
Q Consensus 13 e~~r~~~~~lr~~~r~Ldr~~~~le~~ekk 42 (223)
.+++....+|...+++|++++..||.-...
T Consensus 43 ~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~ 72 (96)
T 1t3j_A 43 QQVDMTQKHLEEEIARLSKEIDQLEKMQNN 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666666554433
No 22
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=46.68 E-value=70 Score=27.72 Aligned_cols=63 Identities=25% Similarity=0.434 Sum_probs=31.9
Q ss_pred CccccCCC-CChHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHc-----CChHHHHHHHHHHHH
Q 043389 1 MSFLFGKR-KTPAELLRENKRMLDKSIREIER------ERQGLQTQEKKLISEIKKSAKQ-----GQMGAVKVMAKDLIR 68 (223)
Q Consensus 1 ~~~~Fg~~-~~p~e~~r~~~~~lr~~~r~Ldr------~~~~le~~ekkl~~~iK~a~k~-----g~~~~ari~Ak~~vr 68 (223)
|. ||++ +||.|.+|. ++...-.|+. ...+.+.+-.+...++|..+-. .+.+.+..+|+++.+
T Consensus 3 m~--F~~~~ktP~elVr~----l~d~l~~l~~~~~~~~~~~k~~ee~sK~l~~mK~iL~G~~e~ep~~e~~~qL~~ei~~ 76 (341)
T 1upk_A 3 FP--FGKSHKSPADIVKN----LKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYN 76 (341)
T ss_dssp ---------CCHHHHHHH----HHHHHHHHHC---CTHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHH
T ss_pred CC--CCCCCCCHHHHHHH----HHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Confidence 45 9876 689888874 4444444442 2234444555555566655542 234567778887766
Q ss_pred H
Q 043389 69 T 69 (223)
Q Consensus 69 ~ 69 (223)
.
T Consensus 77 ~ 77 (341)
T 1upk_A 77 S 77 (341)
T ss_dssp H
T ss_pred h
Confidence 3
No 23
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=41.50 E-value=64 Score=20.26 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 043389 14 LLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQ 53 (223)
Q Consensus 14 ~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~ 53 (223)
.+++....|+...+.+.+-...=++-.+.++.-+++.++.
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k~ 53 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKN 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444555555555555555555556666666666654
No 24
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=36.99 E-value=1.1e+02 Score=21.50 Aligned_cols=53 Identities=25% Similarity=0.213 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 043389 21 MLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQI 73 (223)
Q Consensus 21 ~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~ 73 (223)
.|...+.+|.+++.+..+...-+.+.+....++............+....+.+
T Consensus 19 kL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~ki 71 (98)
T 2ke4_A 19 RLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNI 71 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHH
Confidence 58888888888888888888888888887777643322222234444444333
No 25
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=33.68 E-value=1e+02 Score=23.53 Aligned_cols=96 Identities=17% Similarity=0.184 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHH-----HHHHHHHHHHHHh-HhHHHHHhh
Q 043389 72 QIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQ-----KIMQEFERQNEKM-EMVTEVMGD 145 (223)
Q Consensus 72 ~~~~l~~~~~~L~~v~~ql~~a~~~~~~~~am~~~~~~mk~~n~~m~~~kv~-----~~M~ef~~e~~~~-~~~~e~m~~ 145 (223)
...+|.+.-+.=+ +.+.+-......-...++..+.+|..|...+++..-. .++.++-.....+ -.+..++++
T Consensus 36 ~AN~LiK~m~~~d--~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e 113 (158)
T 1naf_A 36 AANKLIKEMVQED--QKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASD 113 (158)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554444333 2223322222335556677788888888777665332 6788888888777 455566665
Q ss_pred hhcccCCCCC-c--HHHHHHHHHHHHHHhcc
Q 043389 146 AIDDALEGDD-E--EEETEELVNQVLDEIGI 173 (223)
Q Consensus 146 ~l~~~~d~~~-~--eee~d~l~~qvldE~~~ 173 (223)
+-+ +++ . -=.+.+.+++|+..+..
T Consensus 114 ~~d----dee~L~elL~~ND~Ln~vl~kY~~ 140 (158)
T 1naf_A 114 TED----NDEALAEILQANDNLTQVINLYKQ 140 (158)
T ss_dssp CCS----CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccC----CHHHHHHHHHhhHHHHHHHHHHHH
Confidence 311 111 1 12445567777777643
No 26
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=33.65 E-value=1.4e+02 Score=21.81 Aligned_cols=97 Identities=16% Similarity=0.235 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 22 LDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGE 101 (223)
Q Consensus 22 lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~~~~~~L~~v~~ql~~a~~~~~~~~ 101 (223)
+-...+.|+.+...|...|..-.++-|..+.. .++.|...+..+..+..-.+.|..+.-.----.. ...
T Consensus 7 V~s~l~~LEaeyq~L~~kE~qrynqeka~AE~--------A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~e---Y~~ 75 (119)
T 2avr_X 7 LVGELQALDAEYQNLANQEEARFNEERAQADA--------ARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQ---YQE 75 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH---HHH
Confidence 44567888888888888888777776655442 2233454444444444444444443211000111 112
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043389 102 AMKGVTKAMGQMNRQMNLPSLQKIMQEFER 131 (223)
Q Consensus 102 am~~~~~~mk~~n~~m~~~kv~~~M~ef~~ 131 (223)
-++.-..+.+.+.+.| .+-..+++.|+.
T Consensus 76 L~KkYk~~~~~Ld~eI--~~qe~iI~nFe~ 103 (119)
T 2avr_X 76 LASKYEDALKKLEAEM--EQQKAVISDFEK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 2233333444554444 555666666654
No 27
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=30.71 E-value=87 Score=18.56 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 23 DKSIREIERERQGLQTQEKKLISEIKK 49 (223)
Q Consensus 23 r~~~r~Ldr~~~~le~~ekkl~~~iK~ 49 (223)
=..+..++|+|.+-+.+-..++.+.+.
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqkKlke 34 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKKKQQQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777766666666654
No 28
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=28.95 E-value=1.5e+02 Score=20.81 Aligned_cols=58 Identities=10% Similarity=0.142 Sum_probs=36.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 043389 9 KTPAELLRENKRMLDKSIREIERE-RQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLI 67 (223)
Q Consensus 9 ~~p~e~~r~~~~~lr~~~r~Ldr~-~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~v 67 (223)
|.|.++++-....|..+.+-=-.+ .-.|..-+. -....+.++..++...||.||.+..
T Consensus 3 PaP~eql~~te~Ai~~A~~aga~~~apEl~~A~d-Kl~~A~~Am~~~~y~~Ar~lAEqAe 61 (98)
T 4fm3_A 3 PAPLEQMRLTEQALEQAKAVGATDDVAELKLAQD-KYAAAQIAMTAESYKKARLLAEQAE 61 (98)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCCTTSHHHHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCCcccccHHHHHHHH-HHHHHHHHHHcccHHHHHHHHHHHH
Confidence 778899998877777665311000 011222222 2346788899999999999988753
No 29
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=28.67 E-value=36 Score=19.92 Aligned_cols=25 Identities=12% Similarity=0.332 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH
Q 043389 42 KLISEIKKSAKQGQMGAVKVMAKDL 66 (223)
Q Consensus 42 kl~~~iK~a~k~g~~~~ari~Ak~~ 66 (223)
.++++|--|...||.++++.|=.++
T Consensus 12 aiEQqiyvA~seGd~etv~~Le~QL 36 (40)
T 1gp8_A 12 AIRKQMDAAASKGDVETYRKLKAKL 36 (40)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4566888899999999999875554
No 30
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=28.32 E-value=1.1e+02 Score=18.93 Aligned_cols=40 Identities=18% Similarity=0.330 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Q 043389 38 TQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFY 77 (223)
Q Consensus 38 ~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~ 77 (223)
.+...++.-|+.|.+.+..+-+.+|..++-.....+.++.
T Consensus 9 EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 9 QQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 3455667789999999999999999888887777766554
No 31
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=28.29 E-value=1e+02 Score=18.84 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 13 ELLRENKRMLDKSIREIERERQGLQTQEKKLIS 45 (223)
Q Consensus 13 e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~ 45 (223)
+.+-+| ..-|+..++|+|..++..+.-++++.
T Consensus 4 e~LeqW-v~~Rkk~eeler~lrk~kk~iKklEd 35 (50)
T 1a92_A 4 DILEQW-VSGRKKLEELERDLRKLKKKIKKLEE 35 (50)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344444 23466777787777777776666654
No 32
>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A*
Probab=26.89 E-value=1.5e+02 Score=20.88 Aligned_cols=38 Identities=13% Similarity=0.115 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 043389 36 LQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQI 73 (223)
Q Consensus 36 le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~ 73 (223)
+.++-.++..+|..+...|+.+...-++.++++.++..
T Consensus 103 ~~r~l~~~~~~i~~~~~~~d~~~~l~~~~el~~l~~~l 140 (143)
T 2r6a_C 103 KWLMLKVKEQEKTEAERRKDFLTAARIAKEMIEMKKML 140 (143)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 34445556667877777899888888888877766543
No 33
>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III, CHMPS, membrane protein-transport P complex, BROX; 2.60A {Homo sapiens} PDB: 3um1_B
Probab=26.63 E-value=66 Score=21.23 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=15.0
Q ss_pred CcHHHHHHHHHHHHHHhcch
Q 043389 155 DEEEETEELVNQVLDEIGID 174 (223)
Q Consensus 155 ~~eee~d~l~~qvldE~~~~ 174 (223)
.+|++++.+++.+-+|+..+
T Consensus 8 iDE~eL~aELdaL~~e~~~~ 27 (69)
T 3uly_B 8 LDEDDLEAELDALGDELLAD 27 (69)
T ss_pred CCHHHHHHHHHHHHHHHhcc
Confidence 46778888888888887654
No 34
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.20 E-value=3.8e+02 Score=24.58 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 12 AELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKS 50 (223)
Q Consensus 12 ~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a 50 (223)
+..|.+.-++++..|.+|..+...+++.-+....-++..
T Consensus 52 QglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~ 90 (562)
T 3ghg_A 52 KGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNI 90 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Confidence 677778888888888888888888877766666655433
No 35
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=25.57 E-value=2.4e+02 Score=22.03 Aligned_cols=75 Identities=16% Similarity=0.172 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHhcCChhH---H--HHHHHHHHHHHHHh-HhHHHHHhhhhcccCCCCC-c--HHHHHHHHHHHHH
Q 043389 99 MGEAMKGVTKAMGQMNRQMNLPS---L--QKIMQEFERQNEKM-EMVTEVMGDAIDDALEGDD-E--EEETEELVNQVLD 169 (223)
Q Consensus 99 ~~~am~~~~~~mk~~n~~m~~~k---v--~~~M~ef~~e~~~~-~~~~e~m~~~l~~~~d~~~-~--eee~d~l~~qvld 169 (223)
-...++..+.+|..|...+++.. . ..+|.++-.....+ -.+..+++++-+ +++ . -=.+.+.+++|+.
T Consensus 77 eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~d----dee~L~elL~~ND~Ln~vl~ 152 (186)
T 1oxz_A 77 AIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTED----NDEALAEILQANDNLTQVIN 152 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHCCS----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHHHHHHHHccC----CHHHHHHHHHhhHHHHHHHH
Confidence 45566777888888877665531 1 47888888888877 455566665311 111 1 1245566788888
Q ss_pred Hhcchhhh
Q 043389 170 EIGIDINQ 177 (223)
Q Consensus 170 E~~~~~~~ 177 (223)
.|..=..+
T Consensus 153 kY~~~~~g 160 (186)
T 1oxz_A 153 LYKQLVRG 160 (186)
T ss_dssp HHTTHHHH
T ss_pred HHHHHhcC
Confidence 87654433
No 36
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=25.45 E-value=1.1e+02 Score=23.72 Aligned_cols=46 Identities=9% Similarity=0.162 Sum_probs=26.2
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 3 FLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIK 48 (223)
Q Consensus 3 ~~Fg~~~~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK 48 (223)
+||.....-+..++...-.++.....|+.+...|+++...+...|.
T Consensus 35 ~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~ 80 (174)
T 2p22_A 35 KILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQID 80 (174)
T ss_dssp HTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666555555666666666555555555555555555555554444
No 37
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=25.18 E-value=1.1e+02 Score=21.45 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhcCChh----HHHHHHHHHHHHHHHh
Q 043389 103 MKGVTKAMGQMNRQMNLP----SLQKIMQEFERQNEKM 136 (223)
Q Consensus 103 m~~~~~~mk~~n~~m~~~----kv~~~M~ef~~e~~~~ 136 (223)
++..+.+|..|...+++. .=..++.++-.....+
T Consensus 18 v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~ 55 (103)
T 1wrd_A 18 VSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAM 55 (103)
T ss_dssp HHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHH
Confidence 344444555555545442 2225555555555555
No 38
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=22.83 E-value=1.7e+02 Score=19.23 Aligned_cols=38 Identities=18% Similarity=0.362 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Q 043389 39 QEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKF 76 (223)
Q Consensus 39 ~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l 76 (223)
+...++.-|+.|.+.+..+-+.+|..++-....++.++
T Consensus 28 Q~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~~~ 65 (69)
T 1z0k_B 28 QIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQ 65 (69)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 33445667888899999999999988887777766654
No 39
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=22.36 E-value=78 Score=16.90 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043389 36 LQTQEKKLISEIKKSAK 52 (223)
Q Consensus 36 le~~ekkl~~~iK~a~k 52 (223)
|+.+.+.+++.|++++.
T Consensus 11 cdqeikelennirkals 27 (31)
T 2wh0_Q 11 CDQEIKELENNIRKALS 27 (31)
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 44555556666666654
Done!