Query 043389
Match_columns 223
No_of_seqs 138 out of 763
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 07:25:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043389.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043389hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d256ba_ a.24.3.1 (A:) Cytochro 65.2 16 0.0011 24.4 7.6 33 45-77 73-105 (106)
2 d256ba_ a.24.3.1 (A:) Cytochro 37.9 41 0.003 22.1 6.0 37 99-135 3-39 (106)
3 d1fxka_ a.2.5.1 (A:) Prefoldin 35.4 28 0.002 22.8 4.8 36 15-50 70-105 (107)
4 d2csga1 b.82.2.12 (A:3-419) Hy 26.3 51 0.0037 27.3 5.8 45 10-54 11-55 (417)
5 d1t72a_ a.7.12.1 (A:) Phosphat 22.5 1.2E+02 0.0089 21.3 13.9 45 25-73 12-56 (215)
6 d2jdig1 c.49.2.1 (G:1-272) ATP 21.8 32 0.0024 26.0 3.5 27 82-108 2-28 (272)
7 d2azeb1 e.63.1.2 (B:201-301) T 20.9 70 0.0051 20.8 4.6 20 29-48 6-25 (101)
8 d1o3xa_ a.7.8.1 (A:) ADP-ribos 19.6 1E+02 0.0075 20.2 5.4 13 124-136 56-68 (112)
9 d1gkza1 a.29.5.1 (A:38-185) Br 15.0 1.2E+02 0.0086 21.0 4.9 20 4-23 10-29 (148)
10 d1sumb_ a.7.12.1 (B:) PhoU hom 14.6 2E+02 0.014 20.4 12.1 52 22-77 4-55 (225)
No 1
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}
Probab=65.22 E-value=16 Score=24.40 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=28.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Q 043389 45 SEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFY 77 (223)
Q Consensus 45 ~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~ 77 (223)
..|...+..|+...|+..+..+-..|+.+-+.+
T Consensus 73 d~i~~la~~G~l~eAk~~l~~l~~~r~~YHkk~ 105 (106)
T d256ba_ 73 DDALKLANEGKVKEAQAAAEQLKTTRNAYHQKY 105 (106)
T ss_dssp HHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 467789999999999999999999999876544
No 2
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}
Probab=37.94 E-value=41 Score=22.09 Aligned_cols=37 Identities=5% Similarity=0.210 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 043389 99 MGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 135 (223)
Q Consensus 99 ~~~am~~~~~~mk~~n~~m~~~kv~~~M~ef~~e~~~ 135 (223)
+-.+|+....+++.+.+.-+++.|...|++|..-+..
T Consensus 3 l~~~M~~m~~a~k~~~~A~s~~Ei~~~m~~lr~a~~d 39 (106)
T d256ba_ 3 LEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALD 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 4567888888899999999999999999999986665
No 3
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=35.43 E-value=28 Score=22.83 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 15 LRENKRMLDKSIREIERERQGLQTQEKKLISEIKKS 50 (223)
Q Consensus 15 ~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a 50 (223)
+.+..-.|...+..|++++..++.+-..+...+.++
T Consensus 70 l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~~~ 105 (107)
T d1fxka_ 70 LQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555555443
No 4
>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella typhimurium [TaxId: 90371]}
Probab=26.29 E-value=51 Score=27.26 Aligned_cols=45 Identities=22% Similarity=0.326 Sum_probs=38.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 043389 10 TPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQG 54 (223)
Q Consensus 10 ~p~e~~r~~~~~lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g 54 (223)
++...+++.|+.||.....+..--.+|+..-+++..+|+...++|
T Consensus 11 dl~~~i~~~K~~Lr~~~~~~~~~f~~l~~~i~~ev~eI~~l~~~G 55 (417)
T d2csga1 11 DPKAAIRQMKQALRAQIGDVQAVFDRLSATIAARVAEINDLKAQG 55 (417)
T ss_dssp CHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456789999999999999999999999999999999998766554
No 5
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]}
Probab=22.52 E-value=1.2e+02 Score=21.35 Aligned_cols=45 Identities=9% Similarity=0.214 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 043389 25 SIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQI 73 (223)
Q Consensus 25 ~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~ 73 (223)
...++.+++.++-..-.........++..+|.+.| +.++..-..+
T Consensus 12 ~L~~l~~~l~~M~~~v~~~l~~~~~al~~~D~~~a----~~v~~~d~~i 56 (215)
T d1t72a_ 12 ELEETKEQVIKMAKLVQEAIDKATEALNKQNVELA----EEVIKGDDTI 56 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH----HHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH----HHHHHhHHHH
Confidence 34444555555555555555667778888996644 4455444433
No 6
>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=21.78 E-value=32 Score=25.97 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043389 82 QLQGVSLRIQTLKSTQAMGEAMKGVTK 108 (223)
Q Consensus 82 ~L~~v~~ql~~a~~~~~~~~am~~~~~ 108 (223)
.|..|..+|.+..++.+++++|+-++.
T Consensus 2 ~Lkeik~RI~Sv~~t~kITkAMkmVAa 28 (272)
T d2jdig1 2 TLKDITRRLKSIKNIQKITKSMKMVAA 28 (272)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777788888888888888887653
No 7
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.91 E-value=70 Score=20.84 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043389 29 IERERQGLQTQEKKLISEIK 48 (223)
Q Consensus 29 Ldr~~~~le~~ekkl~~~iK 48 (223)
|..++..|+.+|+.|...|+
T Consensus 6 L~~El~~L~~~E~~LD~li~ 25 (101)
T d2azeb1 6 LTQDLRQLQESEQQLDHLMN 25 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444
No 8
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.57 E-value=1e+02 Score=20.17 Aligned_cols=13 Identities=31% Similarity=0.611 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHh
Q 043389 124 KIMQEFERQNEKM 136 (223)
Q Consensus 124 ~~M~ef~~e~~~~ 136 (223)
.++.+|-.....+
T Consensus 56 ell~eL~~~c~~~ 68 (112)
T d1o3xa_ 56 DLMKELYQRCERM 68 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3555555555444
No 9
>d1gkza1 a.29.5.1 (A:38-185) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=15.01 E-value=1.2e+02 Score=21.01 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=15.0
Q ss_pred ccCCCCChHHHHHHHHHHHH
Q 043389 4 LFGKRKTPAELLRENKRMLD 23 (223)
Q Consensus 4 ~Fg~~~~p~e~~r~~~~~lr 23 (223)
+||++++|...++.+++--+
T Consensus 10 ~fG~~~~~~~ll~sa~fl~~ 29 (148)
T d1gkza1 10 YSGRSQDGSHLLKSGRYLQQ 29 (148)
T ss_dssp CCCCCTTTTHHHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHHHH
Confidence 69999999888887655433
No 10
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]}
Probab=14.55 E-value=2e+02 Score=20.36 Aligned_cols=52 Identities=12% Similarity=0.185 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Q 043389 22 LDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFY 77 (223)
Q Consensus 22 lr~~~r~Ldr~~~~le~~ekkl~~~iK~a~k~g~~~~ari~Ak~~vr~rk~~~~l~ 77 (223)
+...+.+|.+.+.++-..-.........++..+|.+ +|+.++..-+.+.++.
T Consensus 4 ~~~~l~~l~~~i~~M~~~v~~~l~~a~~al~~~D~~----~a~~V~~~d~~Id~l~ 55 (225)
T d1sumb_ 4 LNEKVEEFKKGVLKAGWFIEKMFRNSISSLVERNES----LAREVIADEEVVDQME 55 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH----HHHHHHHhHHHHHHHH
Confidence 344556666666666666666667777888888865 4455666666655554
Done!