BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043390
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 16/113 (14%)
Query: 50 YDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILH--------ETASSSH 101
+ + L +AA TK+ D+V LL+ P Q + + GNT+LH +S+
Sbjct: 135 FGELPLSLAACTKQWDVVTYLLEN-PHQP-ASLEATDSLGNTVLHALVMIADNSPENSAL 192
Query: 102 ALPVADKLFRKAPGLLG------MRNNNGGTALLGAAHNGKIEIFNFLAGKNF 148
+ + D L + L + N+ G T L AA GKIEIF + + F
Sbjct: 193 VIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF 245
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 16/113 (14%)
Query: 50 YDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILH--------ETASSSH 101
+ + L +AA TK+ D+V LL+ P Q + + GNT+LH +S+
Sbjct: 148 FGELPLSLAACTKQWDVVTYLLEN-PHQP-ASLEATDSLGNTVLHALVMIADNSPENSAL 205
Query: 102 ALPVADKLFRKAPGLLG------MRNNNGGTALLGAAHNGKIEIFNFLAGKNF 148
+ + D L + L + N+ G T L AA GKIEIF + + F
Sbjct: 206 VIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF 258
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 16/108 (14%)
Query: 47 FTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVA 106
+ + + L +AA T + +V L E P + D M RQ+ GNT+LH + +
Sbjct: 134 YFYFGELPLSLAACTNQPHIV-NYLTENPHKKAD-MRRQDSRGNTVLHALVAIADNTREN 191
Query: 107 DKLFRKAPGLLGMR--------------NNNGGTALLGAAHNGKIEIF 140
K K LL ++ NN+G + L+ AA GKI IF
Sbjct: 192 TKFVTKMYDLLLLKCARLFPDSNLEAVLNNDGLSPLMMAAKTGKIGIF 239
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 52 DTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFR 111
+T LH+AA +SD +LL+ D + Q+ G T LH A S+ A V L R
Sbjct: 23 ETALHLAARYSRSDAAKRLLEASADAXI-----QDNMGRTPLH-AAVSADAQGVFQILLR 76
Query: 112 KAPGLLGMRNNNGGTALLGAA 132
L R ++G T L+ AA
Sbjct: 77 NRATDLDARMHDGTTPLILAA 97
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 52 DTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFR 111
+T LH+AA +SD +LL+ D ++ Q+ G T LH A S+ A V L R
Sbjct: 58 ETALHLAARYSRSDAAKRLLEASADANI-----QDNMGRTPLH-AAVSADAQGVFQILIR 111
Query: 112 KAPGLLGMRNNNGGTALLGAA 132
L R ++G T L+ AA
Sbjct: 112 NRATDLDARMHDGTTPLILAA 132
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 52 DTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFR 111
+T LH+AA +SD +LL+ D ++ Q+ G T LH A S+ A V L R
Sbjct: 26 ETALHLAARYSRSDAAKRLLEASADANI-----QDNMGRTPLH-AAVSADAQGVFQILIR 79
Query: 112 KAPGLLGMRNNNGGTALLGAA 132
L R ++G T L+ AA
Sbjct: 80 NRATDLDARMHDGTTPLILAA 100
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 52 DTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFR 111
+T LH+AA +SD +LL+ D ++ Q+ G T LH A S+ A V L R
Sbjct: 59 ETALHLAARYSRSDAAKRLLEASADANI-----QDNMGRTPLH-AAVSADAQGVFQILIR 112
Query: 112 KAPGLLGMRNNNGGTALLGAA 132
L R ++G T L+ AA
Sbjct: 113 NRATDLDARMHDGTTPLILAA 133
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 53 TVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRK 112
T LH+AA ++V LL+ D + ++K G T LH A + H V KL +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGAD-----VNAKDKNGRTPLHLAARNGHLEVV--KLLLE 56
Query: 113 APGLLGMRNNNGGTALLGAAHNGKIEIFNFL 143
A + ++ NG T L AA NG +E+ L
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 53 TVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRK 112
T LH+AA ++V LL+ D + ++K G T LH A + H V KL +
Sbjct: 37 TPLHLAARNGHLEVVKLLLEAGAD-----VNAKDKNGRTPLHLAARNGHLEVV--KLLLE 89
Query: 113 APGLLGMRNNNGGTALLGAAHNGKIEIFNFL 143
A + ++ NG T L AA NG +E+ L
Sbjct: 90 AGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Score = 25.8 bits (55), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 89 GNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFL 143
G T LH A + H V KL +A + ++ NG T L AA NG +E+ L
Sbjct: 2 GRTPLHLAARNGHLEVV--KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 53 TVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRK 112
T LH+AA ++V LL+ D + ++K G T LH A + H V KL +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGAD-----VNAKDKNGRTPLHLAARNGHLEVV--KLLLE 56
Query: 113 APGLLGMRNNNGGTALLGAAHNGKIEIFNFL 143
A + ++ NG T L AA NG +E+ L
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 89 GNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFL 143
G T LH A + H V KL +A + ++ NG T L AA NG +E+ L
Sbjct: 2 GRTPLHLAARNGHLEVV--KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 53 TVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRK 112
T LH+AA +SD +LL+ D ++ Q+ G T LH A S+ A V L R
Sbjct: 59 TALHLAAAYSRSDAAKRLLEASADANI-----QDNMGRTPLH-AAVSADAQGVFQILIRN 112
Query: 113 APGLLGMRNNNGGTALLGAA 132
L R ++G T L+ AA
Sbjct: 113 RATDLDARMHDGTTPLILAA 132
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 50 YDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILH------ETASSSHAL 103
+ + L +AA TK+ D+V LL E P Q + + GNT+LH + ++ + AL
Sbjct: 140 FGELPLSLAACTKQWDVVSYLL-ENPHQPA-SLQATDSQGNTVLHALVXISDNSAENIAL 197
Query: 104 PVA--DKLFRKAPGLLG------MRNNNGGTALLGAAHNGKIEIFNFLAGKNF 148
+ D L + L +RN T L AA GKIEIF + + F
Sbjct: 198 VTSXYDGLLQAGARLCPTVQLEDIRNLQDLTPLKLAAKEGKIEIFRHILQREF 250
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 16/109 (14%)
Query: 47 FTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETAS-------- 98
+ + + L +AA T + +V L + Q+ + RQ+ GNT+LH +
Sbjct: 136 YFYFGELPLSLAACTNQPHIVHYLTENGHKQA--DLRRQDSRGNTVLHALVAIADNTREN 193
Query: 99 SSHALPVADKLFRKAPGLL------GMRNNNGGTALLGAAHNGKIEIFN 141
+ + D L K L + NN+G + L+ AA GKI IF
Sbjct: 194 TKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQ 242
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat
Domain
Length = 232
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 52 DTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILH 94
+T LH+AA + M L++ P+ + MT + G T LH
Sbjct: 38 ETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 30.0 bits (66), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 87 KAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGK 146
K GNT LH A + HA V L + A + R+ +G T L AA NG EI L K
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGAD--VNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Score = 29.6 bits (65), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 52 DTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFR 111
+T LH AA ++ V KLL + D + ++K GNT LH A + HA V KL
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGAD-----VNARSKDGNTPLHLAAKNGHAEIV--KLLL 62
Query: 112 KAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGK 146
+ R+ +G T A NG EI L K
Sbjct: 63 AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK 97
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 25/93 (26%)
Query: 18 ELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQ 77
ELYN ELC + I+DD+ TKK ++++ L+E+P
Sbjct: 165 ELYNE-----------ELCDLLSTDDTTKIRIFDDS-------TKKGSVIIQGLEEIPVH 206
Query: 78 S-------LDKMTRQNKAGNTILHETASSSHAL 103
S L+K + K T+++ +S SH +
Sbjct: 207 SKDDVYKLLEKGKERRKTATTLMNAQSSRSHTV 239
>pdb|1JEQ|A Chain A, Crystal Structure Of The Ku Heterodimer
pdb|1JEY|A Chain A, Crystal Structure Of The Ku Heterodimer Bound To Dna
Length = 609
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 16 NSELYNALMIKQDEQKVIELCRKVPDHSLCVFTI 49
+S L++AL+IK E++V LCR P ++ + +
Sbjct: 378 SSTLFSALLIKCLEKEVAALCRYTPRRNIPPYFV 411
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 51 DDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILH 94
DDT LH+AA D+V KLL D + N+ GN LH
Sbjct: 72 DDTPLHLAASHGHRDIVQKLLQYKAD-----INAVNEHGNVPLH 110
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 51 DDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILH 94
DDT LH+AA D+V KLL D + N+ GN LH
Sbjct: 67 DDTPLHLAASHGHRDIVQKLLQYKAD-----INAVNEHGNVPLH 105
>pdb|4I43|B Chain B, Crystal Structure Of Prp8:aar2 Complex
Length = 1564
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 31 KVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKL 70
K+ ++ K + + +F IYDD + +++YT S L + L
Sbjct: 1124 KLSDVVMKATEPQMVLFNIYDDWLDRISSYTAFSRLTLLL 1163
>pdb|3SBG|A Chain A, Crystal Structure Of A Prp8 C-Terminal Fragment
Length = 565
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 31 KVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKL 70
K+ ++ K + + +F IYDD + +++YT S L + L
Sbjct: 141 KLSDVVMKATEPQMVLFNIYDDWLDRISSYTAFSRLTLLL 180
>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
pdb|1JPA|B Chain B, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
Length = 312
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 54 VLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILH 94
V+H+ KS VM + + + + SLD RQN T++
Sbjct: 96 VIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQ 136
>pdb|3E66|A Chain A, Crystal Structure Of The Beta-Finger Domain Of Yeast Prp8
pdb|3E66|B Chain B, Crystal Structure Of The Beta-Finger Domain Of Yeast Prp8
Length = 282
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 31 KVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKL 70
K+ ++ K + + +F IYDD + +++YT S L + L
Sbjct: 160 KLSDVVMKATEPQMVLFNIYDDWLDRISSYTAFSRLTLLL 199
>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|B Chain B, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|C Chain C, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|D Chain D, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
Length = 286
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 54 VLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILH 94
V+H+ KS VM + + + + SLD RQN T++
Sbjct: 70 VIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQ 110
>pdb|3E9L|A Chain A, Crystal Structure Of Human Prp8, Residues 1755-2016
Length = 257
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 30 QKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKL 70
+K +L K + + +F +YDD + +++YT S L++ L
Sbjct: 141 EKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILIL 181
>pdb|3SBT|A Chain A, Crystal Structure Of A Aar2-prp8 Complex
Length = 260
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 31 KVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKL 70
K+ ++ K + + +F IYDD + +++YT S L + L
Sbjct: 141 KLSDVVMKATEPQMVLFNIYDDWLDRISSYTAFSRLTLLL 180
>pdb|3E9P|A Chain A, Crystal Structure Of Yeast Prp8, Residues 1827-2092
pdb|3E9P|B Chain B, Crystal Structure Of Yeast Prp8, Residues 1827-2092
Length = 255
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 31 KVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKL 70
K+ ++ K + + +F IYDD + +++YT S L + L
Sbjct: 141 KLSDVVMKATEPQMVLFNIYDDWLDRISSYTAFSRLTLLL 180
>pdb|3ENB|A Chain A, Crystal Structure Of Prp8 Core Domain Iv
pdb|3ENB|B Chain B, Crystal Structure Of Prp8 Core Domain Iv
Length = 222
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 30 QKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKL 70
+K +L K + + +F +YDD + +++YT S L++ L
Sbjct: 132 EKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILIL 172
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 127 ALLGAAHNGKIEIFNFLAGKNFRL 150
AL+G ++GK +FN + G N R+
Sbjct: 7 ALIGNPNSGKTSLFNLITGHNQRV 30
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 127 ALLGAAHNGKIEIFNFLAGKNFRL 150
AL+G ++GK +FN + G N R+
Sbjct: 7 ALIGNPNSGKTSLFNLITGHNQRV 30
>pdb|3ZEF|B Chain B, Crystal Structure Of Prp8:aar2 Complex: Second Crystal Form
At 3.1 Angstrom Resolution
pdb|3ZEF|E Chain E, Crystal Structure Of Prp8:aar2 Complex: Second Crystal Form
At 3.1 Angstrom Resolution
Length = 1531
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 31 KVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKL 70
K+ ++ K + + +F IYDD + +++YT S L + L
Sbjct: 1091 KLSDVVMKATEPQMVLFNIYDDWLDRLSSYTAFSRLTLLL 1130
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 127 ALLGAAHNGKIEIFNFLAGKNFRL 150
AL+G ++GK +FN + G N R+
Sbjct: 7 ALIGNPNSGKTSLFNLITGHNQRV 30
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 127 ALLGAAHNGKIEIFNFLAGKNFRL 150
AL+G ++GK +FN + G N R+
Sbjct: 7 ALIGNPNSGKTSLFNLITGHNQRV 30
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 127 ALLGAAHNGKIEIFNFLAGKNFRL 150
AL+G ++GK +FN + G N R+
Sbjct: 7 ALIGNPNSGKTSLFNLITGHNQRV 30
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,371,852
Number of Sequences: 62578
Number of extensions: 164271
Number of successful extensions: 481
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 450
Number of HSP's gapped (non-prelim): 58
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)