BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043391
         (100 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TTS|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
           Circulans Sp. Alkalophilus
 pdb|3TTS|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
           Circulans Sp. Alkalophilus
 pdb|3TTS|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
           Circulans Sp. Alkalophilus
 pdb|3TTS|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
           Circulans Sp. Alkalophilus
 pdb|3TTS|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
           Circulans Sp. Alkalophilus
 pdb|3TTS|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
           Circulans Sp. Alkalophilus
 pdb|3TTY|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
           Circulans Sp. Alkalophilus In Complex With Galactose
 pdb|3TTY|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
           Circulans Sp. Alkalophilus In Complex With Galactose
 pdb|3TTY|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
           Circulans Sp. Alkalophilus In Complex With Galactose
 pdb|3TTY|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
           Circulans Sp. Alkalophilus In Complex With Galactose
 pdb|3TTY|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
           Circulans Sp. Alkalophilus In Complex With Galactose
 pdb|3TTY|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
           Circulans Sp. Alkalophilus In Complex With Galactose
          Length = 675

 Score = 27.3 bits (59), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 48  LDY---CHAIDIITHNCWPAMLTSLGFTTKEGNILRG 81
           LDY      +D+++ + +P+M T   FT    N++RG
Sbjct: 260 LDYFKWAKEMDVVSWDNYPSMDTPFSFTAMAHNLMRG 296


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,868,012
Number of Sequences: 62578
Number of extensions: 96080
Number of successful extensions: 229
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 224
Number of HSP's gapped (non-prelim): 6
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)