Query 043391
Match_columns 100
No_of_seqs 97 out of 99
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 04:35:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043391.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043391hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00213 predicted protein; Pr 100.0 3.9E-30 8.5E-35 183.0 4.5 73 16-93 43-117 (118)
2 PF05617 Prolamin_like: Prolam 99.8 1.8E-21 3.9E-26 123.8 4.2 65 20-84 1-70 (70)
3 PLN00214 putative protein; Pro 79.0 1.7 3.7E-05 31.3 2.2 33 29-63 45-78 (115)
4 smart00499 AAI Plant lipid tra 38.3 14 0.0003 21.9 0.5 21 45-65 23-44 (79)
5 cd04660 nsLTP_like nsLTP_like: 37.1 26 0.00057 22.1 1.7 18 46-63 24-41 (73)
6 cd00010 AAI_LTSS AAI_LTSS: Alp 36.6 31 0.00068 20.5 2.0 29 39-67 7-39 (63)
7 PF15331 TP53IP5: Cellular tum 36.6 8.4 0.00018 30.5 -0.8 30 1-30 15-52 (220)
8 cd01960 nsLTP1 nsLTP1: Non-spe 33.9 33 0.00072 22.1 1.9 60 21-85 3-76 (89)
9 PF14368 LTP_2: Probable lipid 22.0 34 0.00073 21.7 0.2 66 16-86 17-90 (96)
10 COG2406 Protein distantly rela 20.7 52 0.0011 25.1 1.1 37 7-43 68-116 (172)
11 PF00234 Tryp_alpha_amyl: Prot 20.5 47 0.001 20.9 0.7 25 38-62 20-45 (90)
No 1
>PLN00213 predicted protein; Provisional
Probab=99.96 E-value=3.9e-30 Score=183.04 Aligned_cols=73 Identities=22% Similarity=0.410 Sum_probs=67.6
Q ss_pred CCcchhhhcccCCcchHHHHHHHHHhCccc-cChhchHHHHhhhcCchhhhhcCCCCCCcchhhhhhhcccCC-CCCccc
Q 043391 16 GDLTECWNPLMKLKSCSNEIVIFFLNSQAD-IGLDYCHAIDIITHNCWPAMLTSLGFTTKEGNILRGYYDASS-APSLGG 93 (100)
Q Consensus 16 ~~~~~Cwssl~~v~gC~~EI~~~~l~G~~~-Ig~~CC~Ai~~I~~~CWP~mFps~pf~p~e~~~LKg~C~~~~-~~sp~~ 93 (100)
+|+.||||||++++||+.||++++++|||+ ||++|||||++++ +|||+| |++||||+ +||++|++++ +++|++
T Consensus 43 pd~~kCwSSl~~vpGCv~EI~~si~~gkf~~Ig~aCCKAf~~~d-nCwP~~-P~~P~fPp---~LK~~Cs~i~~~~~~~~ 117 (118)
T PLN00213 43 PDITKCFSSVMDIPGCIAEISQSIFTGKFGNLGPACCKAFLDAD-NCIPKI-PFIPFFPP---MLKEQCSRVAGATPPIP 117 (118)
T ss_pred ccHHHHHHHHcCCcchHHHHHHHHHhchhcccchHHHHHHHhhh-ccccCC-cCCCccch---HHHHHHhcccCCCCCCC
Confidence 589999999999999999999999999997 9999999999966 999995 99999998 9999999997 556654
No 2
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=99.84 E-value=1.8e-21 Score=123.75 Aligned_cols=65 Identities=28% Similarity=0.542 Sum_probs=57.1
Q ss_pred hhhhcccCCcchHHHHHHHHHhCcc-ccChhchHHHHhhhcCchhhhhcCCCCCCcchh----hhhhhcc
Q 043391 20 ECWNPLMKLKSCSNEIVIFFLNSQA-DIGLDYCHAIDIITHNCWPAMLTSLGFTTKEGN----ILRGYYD 84 (100)
Q Consensus 20 ~Cwssl~~v~gC~~EI~~~~l~G~~-~Ig~~CC~Ai~~I~~~CWP~mFps~pf~p~e~~----~LKg~C~ 84 (100)
|||++++++++|+.||+.+|++|+. .||++||++|+.++++|||.|+...|++|.+.+ .|+++|+
T Consensus 1 kc~~~~~~~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~~C~~~l~~~~~~~p~~~~~~r~~l~~~C~ 70 (70)
T PF05617_consen 1 KCLSSCAKSPGCGDEIFNSFFNGNKKNIGPECCKAINKMGKDCHPALFKMFPFTPFFKPLLRDLLWNHCS 70 (70)
T ss_pred ChHHHcCCccchHHHHHHHHHcCCCCCCChHHHHHHHHHhHhHHHHHHHHccCCCCccchhHHHHHhhcC
Confidence 6999999999999999999999995 499999999999999999995555555555556 9999996
No 3
>PLN00214 putative protein; Provisional
Probab=79.04 E-value=1.7 Score=31.33 Aligned_cols=33 Identities=15% Similarity=0.329 Sum_probs=28.8
Q ss_pred cchHHHHHHHHH-hCccccChhchHHHHhhhcCchh
Q 043391 29 KSCSNEIVIFFL-NSQADIGLDYCHAIDIITHNCWP 63 (100)
Q Consensus 29 ~gC~~EI~~~~l-~G~~~Ig~~CC~Ai~~I~~~CWP 63 (100)
+-|..||+..++ ||. +..+||+-+...+.+|=-
T Consensus 45 ~KCa~EI~a~i~~N~t--~s~~CC~~LVk~GK~CH~ 78 (115)
T PLN00214 45 PKCALDIIAVVFENGT--LIDPCCNDLVKEGKVCHD 78 (115)
T ss_pred HhhHHHHHHHHHcCCC--CchHHHHHHHHHhhHHHH
Confidence 669999999999 665 589999999999999944
No 4
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=38.34 E-value=14 Score=21.92 Aligned_cols=21 Identities=10% Similarity=0.226 Sum_probs=16.9
Q ss_pred ccChhchHHHHhh-hcCchhhh
Q 043391 45 DIGLDYCHAIDII-THNCWPAM 65 (100)
Q Consensus 45 ~Ig~~CC~Ai~~I-~~~CWP~m 65 (100)
.....||..++.+ ...|.=..
T Consensus 23 ~p~~~CC~~l~~~~~~~C~C~~ 44 (79)
T smart00499 23 PPSQQCCSQLRGLNSAQCRCLA 44 (79)
T ss_pred CCchHHHHHHHHhcccCCcchh
Confidence 3778999999999 88886543
No 5
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=37.07 E-value=26 Score=22.05 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=14.6
Q ss_pred cChhchHHHHhhhcCchh
Q 043391 46 IGLDYCHAIDIITHNCWP 63 (100)
Q Consensus 46 Ig~~CC~Ai~~I~~~CWP 63 (100)
-+.+||.+|+.++..|.=
T Consensus 24 Ps~~CC~~vk~~~~~C~C 41 (73)
T cd04660 24 PSRECCAALRRADLPCLC 41 (73)
T ss_pred CCHHHHHHHHcCCcCCEe
Confidence 678899999988767753
No 6
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=36.59 E-value=31 Score=20.48 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=19.5
Q ss_pred HHhCccc-cChhchHHHHhhhc---Cchhhhhc
Q 043391 39 FLNSQAD-IGLDYCHAIDIITH---NCWPAMLT 67 (100)
Q Consensus 39 ~l~G~~~-Ig~~CC~Ai~~I~~---~CWP~mFp 67 (100)
|++|... -.++||.+++.+.+ .|.=..+-
T Consensus 7 y~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~ 39 (63)
T cd00010 7 YLTGGATAPPSDCCSGLKSVVKSDPKCLCAALN 39 (63)
T ss_pred HHcCCCCCCChHHHHHHHHHHhcChhhHHHHHc
Confidence 4455544 88999999999853 56544433
No 7
>PF15331 TP53IP5: Cellular tumour antigen p53-inducible 5
Probab=36.55 E-value=8.4 Score=30.50 Aligned_cols=30 Identities=37% Similarity=0.707 Sum_probs=21.0
Q ss_pred CCcccchHHHHHhhC-CC------c-chhhhcccCCcc
Q 043391 1 MALKHYDLAIRLEAS-GD------L-TECWNPLMKLKS 30 (100)
Q Consensus 1 ~~~~~~~l~~rl~~~-~~------~-~~Cwssl~~v~g 30 (100)
|.||+.+|-.=|+.. +- + ..||+||..|+.
T Consensus 15 mVlKnLSLLKLlKsSN~RiqeLHnLAkrCW~Sll~VPk 52 (220)
T PF15331_consen 15 MVLKNLSLLKLLKSSNPRIQELHNLAKRCWNSLLRVPK 52 (220)
T ss_pred HHHHHhHHHHHHhhcCHHHHHHHHHHHHHHHHHhcccc
Confidence 578888888777621 11 2 259999999874
No 8
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=33.92 E-value=33 Score=22.11 Aligned_cols=60 Identities=15% Similarity=0.316 Sum_probs=33.9
Q ss_pred hhhcccCCcchHHHHHHHHHhCccc-cChhchHHHHhhhc------------CchhhhhcCCC-CCCcchhhhhhhccc
Q 043391 21 CWNPLMKLKSCSNEIVIFFLNSQAD-IGLDYCHAIDIITH------------NCWPAMLTSLG-FTTKEGNILRGYYDA 85 (100)
Q Consensus 21 Cwssl~~v~gC~~EI~~~~l~G~~~-Ig~~CC~Ai~~I~~------------~CWP~mFps~p-f~p~e~~~LKg~C~~ 85 (100)
|=..+..+..|.. |++|... -++.||.+++.+.. .|.-.+....+ +.+.-..-|=+.|..
T Consensus 3 C~~v~~~l~~C~~-----y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v 76 (89)
T cd01960 3 CGQVTSLLAPCLG-----YLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGV 76 (89)
T ss_pred HHHHHhhHHhHHH-----HHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhccc
Confidence 4444555555643 4455544 88999999998753 24333333322 444444556666754
No 9
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=22.00 E-value=34 Score=21.66 Aligned_cols=66 Identities=17% Similarity=0.329 Sum_probs=31.1
Q ss_pred CCcchhhhcccCCcchHHHHHHHHHhCccccChhchHHHHhh---hcCchhhhhcCCC-----CCCcchhhhhhhcccC
Q 043391 16 GDLTECWNPLMKLKSCSNEIVIFFLNSQADIGLDYCHAIDII---THNCWPAMLTSLG-----FTTKEGNILRGYYDAS 86 (100)
Q Consensus 16 ~~~~~Cwssl~~v~gC~~EI~~~~l~G~~~Ig~~CC~Ai~~I---~~~CWP~mFps~p-----f~p~e~~~LKg~C~~~ 86 (100)
.....|.++++ .|... ..+.++...-.++||.+++.+ +.+|.=.++.... +...-+..|=..|...
T Consensus 17 ~~~~~c~~~l~---~c~~~--~~~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~Cg~~ 90 (96)
T PF14368_consen 17 ACCCSCANSLL---PCCPC--LCYVTGGPAPSAACCSALKSVVQADPPCLCQLLNSPGAPGFGINVTRALALPAACGVP 90 (96)
T ss_dssp -BTTB-HCCCC---HH--H--HHHHCC-----HHHHHHHCC----HCCHHHCCCC-CCHCHHCCTCHHHHHHHHHCTSS
T ss_pred CCcchhHHHHh---ccccc--hhccCCCCCCCHHHHHHHHHhccCCCCCHHHhcCccccccCCcCHHHHHHHHHHcCCC
Confidence 34456755543 44322 124556666999999999997 8888655544432 3333333444455443
No 10
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=20.72 E-value=52 Score=25.14 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=29.7
Q ss_pred hHHHHHh-hCCCcchhhhcccCCcch-----------HHHHHHHHHhCc
Q 043391 7 DLAIRLE-ASGDLTECWNPLMKLKSC-----------SNEIVIFFLNSQ 43 (100)
Q Consensus 7 ~l~~rl~-~~~~~~~Cwssl~~v~gC-----------~~EI~~~~l~G~ 43 (100)
-++.||. .++++-.|+.-|.++.|| +.||++..+..+
T Consensus 68 ~i~~Ri~elg~~~Prd~~~l~dISgC~~a~LPedp~D~~~~l~vlv~AE 116 (172)
T COG2406 68 LIAPRIYELGGDLPRDMKKLHDISGCKPAYLPEDPYDIDEILAVLVKAE 116 (172)
T ss_pred HHHHHHHHhCCCCchhHHHHHhhcCCCCCCCCCCccCHHHHHHHHHHHH
Confidence 3678885 689999999999999999 677776655544
No 11
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=20.47 E-value=47 Score=20.95 Aligned_cols=25 Identities=12% Similarity=0.385 Sum_probs=19.7
Q ss_pred HHHhCccc-cChhchHHHHhhhcCch
Q 043391 38 FFLNSQAD-IGLDYCHAIDIITHNCW 62 (100)
Q Consensus 38 ~~l~G~~~-Ig~~CC~Ai~~I~~~CW 62 (100)
.+..|... ....||..++.++..|.
T Consensus 20 ~~~~~~~~~~~~~CC~~L~~l~~~C~ 45 (90)
T PF00234_consen 20 PYLQGGCQQPSQQCCQQLRQLDPQCR 45 (90)
T ss_dssp HHHTTSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccccchHHHhHHHHHHhHHhh
Confidence 35666665 88899999999988774
Done!