Query 043391
Match_columns 100
No_of_seqs 97 out of 99
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 07:27:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043391.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043391hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bwo_A NS-LTP1, nonspecific li 18.7 1.6E+02 0.0053 18.4 3.9 61 21-86 3-76 (90)
2 2ebo_A Ebola virus envelope gl 16.9 25 0.00087 22.3 -0.2 9 44-52 45-54 (74)
3 2alg_A Non-specific lipid tran 14.9 90 0.0031 19.6 2.0 61 21-86 4-77 (92)
4 1afh_A Maize nonspecific lipid 14.1 1E+02 0.0034 19.4 2.1 61 21-86 4-78 (93)
5 2knp_A Mcocc-1; disulfide-rich 14.0 23 0.00078 19.3 -0.9 10 59-68 17-26 (33)
6 1ebo_A Ebola virus envelope pr 13.6 35 0.0012 23.7 -0.2 9 44-52 82-91 (131)
7 1n89_A Lipid transfer protein; 13.3 1.1E+02 0.0038 18.1 2.0 32 27-64 6-37 (67)
8 2ljo_A Non-specific lipid-tran 12.2 1.2E+02 0.0042 19.3 2.1 20 39-58 17-36 (93)
9 1l6h_A LTP2, non-specific lipi 11.9 98 0.0034 18.5 1.5 18 45-63 20-37 (69)
10 1siy_A LTP 1, NS-LTP1, nonspec 10.6 1.5E+02 0.0052 18.4 2.1 61 21-86 3-76 (91)
No 1
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=18.75 E-value=1.6e+02 Score=18.40 Aligned_cols=61 Identities=8% Similarity=0.251 Sum_probs=35.2
Q ss_pred hhhcccCCcchHHHHHHHHHhCccccChhchHHHHhhhc------------CchhhhhcCC-CCCCcchhhhhhhcccC
Q 043391 21 CWNPLMKLKSCSNEIVIFFLNSQADIGLDYCHAIDIITH------------NCWPAMLTSL-GFTTKEGNILRGYYDAS 86 (100)
Q Consensus 21 Cwssl~~v~gC~~EI~~~~l~G~~~Ig~~CC~Ai~~I~~------------~CWP~mFps~-pf~p~e~~~LKg~C~~~ 86 (100)
|=+.+.++..|..- ++|.....++||.+++.+.. .|.-....++ ++.+.-+.-|=+.|...
T Consensus 3 C~~v~~~L~pCl~y-----~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~ 76 (90)
T 1bwo_A 3 CGHVDSLVRPCLSY-----VQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVN 76 (90)
T ss_dssp HHHHHHHHGGGHHH-----HTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTCC
T ss_pred HHHHHHhhcccHHH-----HcCCCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCCC
Confidence 33344445555444 33333377889999998752 4554443444 45555566677788653
No 2
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=16.92 E-value=25 Score=22.33 Aligned_cols=9 Identities=22% Similarity=0.390 Sum_probs=7.2
Q ss_pred cc-cChhchH
Q 043391 44 AD-IGLDYCH 52 (100)
Q Consensus 44 ~~-Ig~~CC~ 52 (100)
-+ +||+||-
T Consensus 45 c~ilgpdc~i 54 (74)
T 2ebo_A 45 CHILGPDCAI 54 (74)
T ss_dssp HHHHGGGGGC
T ss_pred ceecCCcccc
Confidence 35 9999994
No 3
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=14.90 E-value=90 Score=19.59 Aligned_cols=61 Identities=20% Similarity=0.376 Sum_probs=37.1
Q ss_pred hhhcccCCcchHHHHHHHHHhCccccChhchHHHHhhh-------c-----CchhhhhcCC-CCCCcchhhhhhhcccC
Q 043391 21 CWNPLMKLKSCSNEIVIFFLNSQADIGLDYCHAIDIIT-------H-----NCWPAMLTSL-GFTTKEGNILRGYYDAS 86 (100)
Q Consensus 21 Cwssl~~v~gC~~EI~~~~l~G~~~Ig~~CC~Ai~~I~-------~-----~CWP~mFps~-pf~p~e~~~LKg~C~~~ 86 (100)
|=..+.++..|..-+ ..| ....++||.+++.+. + .|.-...+++ ++.+.-+.-|-+.|...
T Consensus 4 C~~v~~~L~pCl~y~----~~~-~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP~~Cgv~ 77 (92)
T 2alg_A 4 CGQVSSSLAPCIPYV----RGG-GAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVS 77 (92)
T ss_dssp HHHHHHHHGGGHHHH----HHC-SCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTTCC
T ss_pred hHHHHHhccCcHHHH----cCC-CCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHHHHcCCC
Confidence 444445556665544 223 247789999999875 3 4454444444 55666666777888654
No 4
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=14.13 E-value=1e+02 Score=19.40 Aligned_cols=61 Identities=13% Similarity=0.293 Sum_probs=35.1
Q ss_pred hhhcccCCcchHHHHHHHHHhCccc-cChhchHHHHhhh----------c--CchhhhhcCC-CCCCcchhhhhhhcccC
Q 043391 21 CWNPLMKLKSCSNEIVIFFLNSQAD-IGLDYCHAIDIIT----------H--NCWPAMLTSL-GFTTKEGNILRGYYDAS 86 (100)
Q Consensus 21 Cwssl~~v~gC~~EI~~~~l~G~~~-Ig~~CC~Ai~~I~----------~--~CWP~mFps~-pf~p~e~~~LKg~C~~~ 86 (100)
|=+.+..+..|..- ++|... -.++||.+++.+. . .|.-...+.+ ++.+.-+.-|-+.|...
T Consensus 4 C~~v~~~L~pCl~y-----~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v~ 78 (93)
T 1afh_A 4 CGQVASAIAPCISY-----ARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVS 78 (93)
T ss_dssp SHHHHHHHGGGHHH-----HTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHCC
T ss_pred hHHHHHhccCcHHH-----HcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCCC
Confidence 33444445555443 344444 6678999999985 2 3443333333 45555566777888653
No 5
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=13.97 E-value=23 Score=19.33 Aligned_cols=10 Identities=30% Similarity=1.122 Sum_probs=7.1
Q ss_pred cCchhhhhcC
Q 043391 59 HNCWPAMLTS 68 (100)
Q Consensus 59 ~~CWP~mFps 68 (100)
-+|||.+-|.
T Consensus 17 crcwptvtpg 26 (33)
T 2knp_A 17 CRCWPTVTPG 26 (33)
T ss_dssp CCEEECSSTT
T ss_pred eeeccccCCC
Confidence 3799988554
No 6
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=13.64 E-value=35 Score=23.75 Aligned_cols=9 Identities=22% Similarity=0.290 Sum_probs=7.1
Q ss_pred cc-cChhchH
Q 043391 44 AD-IGLDYCH 52 (100)
Q Consensus 44 ~~-Ig~~CC~ 52 (100)
-+ +||+||-
T Consensus 82 C~iLGPdCcI 91 (131)
T 1ebo_A 82 CHILGPDCRI 91 (131)
T ss_dssp HHHHGGGGGC
T ss_pred ceecCCcccc
Confidence 35 9999993
No 7
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=13.27 E-value=1.1e+02 Score=18.09 Aligned_cols=32 Identities=22% Similarity=0.505 Sum_probs=20.3
Q ss_pred CCcchHHHHHHHHHhCccccChhchHHHHhhhcCchhh
Q 043391 27 KLKSCSNEIVIFFLNSQADIGLDYCHAIDIITHNCWPA 64 (100)
Q Consensus 27 ~v~gC~~EI~~~~l~G~~~Ig~~CC~Ai~~I~~~CWP~ 64 (100)
++..|...| ..| ....++||.+++.. ..|.=.
T Consensus 6 ~L~pC~~~v----~~~-~~Ps~~CC~~lk~~-~~ClC~ 37 (67)
T 1n89_A 6 QLAVCASAI----LSG-AKPSGECCGNLRAQ-QGCFCQ 37 (67)
T ss_dssp TTHHHHHHH----TTC-CCCCHHHHHHHHHH-SSHHHH
T ss_pred hcccCHHHH----cCC-CCCCHHHHHhhCCC-CCCCCc
Confidence 344565543 233 34889999999975 677543
No 8
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=12.21 E-value=1.2e+02 Score=19.26 Aligned_cols=20 Identities=10% Similarity=0.316 Sum_probs=15.0
Q ss_pred HHhCccccChhchHHHHhhh
Q 043391 39 FLNSQADIGLDYCHAIDIIT 58 (100)
Q Consensus 39 ~l~G~~~Ig~~CC~Ai~~I~ 58 (100)
++.|.....+.||..++.+.
T Consensus 17 Yv~g~~~p~~~CC~gv~~l~ 36 (93)
T 2ljo_A 17 YLTGGPGPSPQCCGGVKKLL 36 (93)
T ss_dssp HHTTSSCCCHHHHHHHHHHH
T ss_pred HHcCCCCCCCchhhHHHHHH
Confidence 45565458899999998874
No 9
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=11.88 E-value=98 Score=18.46 Aligned_cols=18 Identities=11% Similarity=0.368 Sum_probs=14.0
Q ss_pred ccChhchHHHHhhhcCchh
Q 043391 45 DIGLDYCHAIDIITHNCWP 63 (100)
Q Consensus 45 ~Ig~~CC~Ai~~I~~~CWP 63 (100)
...++||.+++.. ..|.=
T Consensus 20 ~Ps~~CC~~lk~~-~~ClC 37 (69)
T 1l6h_A 20 RPTAACCSSLRAQ-QGCFC 37 (69)
T ss_dssp STTHHHHHHHHHH-HHHHH
T ss_pred CCCHHHHHhhCCC-CCCCC
Confidence 4889999999975 56753
No 10
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}
Probab=10.58 E-value=1.5e+02 Score=18.44 Aligned_cols=61 Identities=18% Similarity=0.308 Sum_probs=34.2
Q ss_pred hhhcccCCcchHHHHHHHHHhCccccChhchHHHHhhh----------cCc--hhhhhcCC-CCCCcchhhhhhhcccC
Q 043391 21 CWNPLMKLKSCSNEIVIFFLNSQADIGLDYCHAIDIIT----------HNC--WPAMLTSL-GFTTKEGNILRGYYDAS 86 (100)
Q Consensus 21 Cwssl~~v~gC~~EI~~~~l~G~~~Ig~~CC~Ai~~I~----------~~C--WP~mFps~-pf~p~e~~~LKg~C~~~ 86 (100)
|=+.+.++..|..- ++|...-.++||.+++.+. ..| .-...... ++.+.-+.-|=+.|...
T Consensus 3 C~~v~~~L~pCl~y-----v~~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~~in~~~A~~LP~~Cgv~ 76 (91)
T 1siy_A 3 CGQVQGNLAQCIGF-----LQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVN 76 (91)
T ss_dssp TTTTHHHHHHHHHH-----HTSCSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHTCC
T ss_pred HHHHHHhccCcHHH-----HhCCCCCcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccCCcCHHHHHHHHHHcCCC
Confidence 33334444455443 3333237788999999873 134 53333444 45555566777888653
Done!