Query 043391
Match_columns 100
No_of_seqs 97 out of 99
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 07:28:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043391.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043391hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fk5a_ a.52.1.1 (A:) Plant no 40.5 12 0.00084 22.5 3.0 48 39-86 17-78 (93)
2 d1mida_ a.52.1.1 (A:) Plant no 28.3 24 0.0018 20.9 3.0 48 39-86 16-76 (91)
3 d1k8rb_ d.15.1.5 (B:) Protein 16.7 28 0.002 21.6 1.5 16 25-40 14-29 (95)
4 d1q8da_ a.228.1.1 (A:) GDNF re 9.8 7 0.00051 24.9 -3.1 23 10-34 20-42 (108)
5 d1hssa_ a.52.1.2 (A:) 0.19 alp 9.7 66 0.0048 20.5 1.8 37 26-63 11-50 (120)
6 d1nf9a_ c.33.1.3 (A:) Phenazin 8.7 37 0.0027 22.1 0.2 55 2-57 127-183 (207)
7 d1bu2a2 a.74.1.1 (A:149-250) V 7.4 45 0.0033 20.6 0.1 16 51-67 12-27 (102)
8 d2cqea2 g.66.1.1 (A:429-457) Z 7.0 55 0.004 16.2 0.3 10 78-87 12-21 (29)
9 d1tuka1 a.52.1.1 (A:1-67) Non- 5.9 1.9E+02 0.014 16.4 2.5 34 25-64 4-37 (67)
10 d2cora2 g.39.1.3 (A:8-42) Pinc 5.8 46 0.0033 17.2 -0.4 28 46-74 6-33 (35)
No 1
>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}
Probab=40.47 E-value=12 Score=22.49 Aligned_cols=48 Identities=13% Similarity=0.287 Sum_probs=30.4
Q ss_pred HHhCccc-cChhchHHHHhhhc------------Cchhhhhc-CCCCCCcchhhhhhhcccC
Q 043391 39 FLNSQAD-IGLDYCHAIDIITH------------NCWPAMLT-SLGFTTKEGNILRGYYDAS 86 (100)
Q Consensus 39 ~l~G~~~-Ig~~CC~Ai~~I~~------------~CWP~mFp-s~pf~p~e~~~LKg~C~~~ 86 (100)
|++|... -.+.||.+++.+.. +|.-.... ..|+.+.-..-|=..|...
T Consensus 17 Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~ 78 (93)
T d1fk5a_ 17 YARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVS 78 (93)
T ss_dssp HHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCC
T ss_pred HHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCCC
Confidence 5667665 78999999998763 23333332 2355666566677788543
No 2
>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=28.33 E-value=24 Score=20.89 Aligned_cols=48 Identities=6% Similarity=0.263 Sum_probs=29.6
Q ss_pred HHhCccccChhchHHHHhhhc------------CchhhhhcC-CCCCCcchhhhhhhcccC
Q 043391 39 FLNSQADIGLDYCHAIDIITH------------NCWPAMLTS-LGFTTKEGNILRGYYDAS 86 (100)
Q Consensus 39 ~l~G~~~Ig~~CC~Ai~~I~~------------~CWP~mFps-~pf~p~e~~~LKg~C~~~ 86 (100)
|++|.....+.||.+++.+.. +|.-..-.. .++.+.-+.-|=+.|...
T Consensus 16 Yl~g~~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~ 76 (91)
T d1mida_ 16 YVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVN 76 (91)
T ss_dssp HHTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCC
T ss_pred HHcCCCCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhchHhcCCC
Confidence 556665599999999988853 233333222 234555566677788554
No 3
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=16.70 E-value=28 Score=21.63 Aligned_cols=16 Identities=6% Similarity=0.061 Sum_probs=12.5
Q ss_pred ccCCcchHHHHHHHHH
Q 043391 25 LMKLKSCSNEIVIFFL 40 (100)
Q Consensus 25 l~~v~gC~~EI~~~~l 40 (100)
..|+.||.+||+.-+|
T Consensus 14 ~vni~gC~~ai~~~~L 29 (95)
T d1k8rb_ 14 AVQSRGDYQKTLAIAL 29 (95)
T ss_dssp EEECCSCHHHHHHHHH
T ss_pred EEEeccCHHHHHHHHH
Confidence 6789999999765544
No 4
>d1q8da_ a.228.1.1 (A:) GDNF receptor alpha {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.81 E-value=7 Score=24.92 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=13.0
Q ss_pred HHHhhCCCcchhhhcccCCcchHHH
Q 043391 10 IRLEASGDLTECWNPLMKLKSCSNE 34 (100)
Q Consensus 10 ~rl~~~~~~~~Cwssl~~v~gC~~E 34 (100)
.||+ ...++||-+...+.+|..+
T Consensus 20 srl~--~Fq~~C~~~~~s~~~C~~~ 42 (108)
T d1q8da_ 20 SRLA--DFFTNCQPESRSVSNCLKE 42 (108)
T ss_dssp HHHH--HHHHHTCCSSSSCCSCCGG
T ss_pred HHHH--HHHHhCCcCccccccccCC
Confidence 3555 3455676666666666444
No 5
>d1hssa_ a.52.1.2 (A:) 0.19 alpha-amylase inhibitor {Wheat (Triticum aestivum) [TaxId: 4565]}
Probab=9.73 E-value=66 Score=20.55 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=25.6
Q ss_pred cCCcchHHHHHHHHHhCcc--c-cChhchHHHHhhhcCchh
Q 043391 26 MKLKSCSNEIVIFFLNSQA--D-IGLDYCHAIDIITHNCWP 63 (100)
Q Consensus 26 ~~v~gC~~EI~~~~l~G~~--~-Ig~~CC~Ai~~I~~~CWP 63 (100)
.-+++|-..+.+- -.|.. . +...||+=+..|.+.|+=
T Consensus 11 ~pL~~CR~yv~~q-~~G~~~~~~~k~~CC~eLa~i~~~CRC 50 (120)
T d1hssa_ 11 PALPACRPLLRLQ-CNGSQVPEAVLRDCCQQLAHISEWCRC 50 (120)
T ss_dssp SCCTTHHHHHHHH-TTTCCCCHHHHHHHHHHHHTSCTTTHH
T ss_pred CccHHHHHHHHHH-hcCCCCcchHHHHHHHHHHhcCcccch
Confidence 3467888776443 33332 2 668899999999999964
No 6
>d1nf9a_ c.33.1.3 (A:) Phenazine biosynthesis protein PhzD {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.74 E-value=37 Score=22.12 Aligned_cols=55 Identities=13% Similarity=-0.060 Sum_probs=39.1
Q ss_pred CcccchHHHHHhhCCCcchhhhcccCCcchHHHHHHHHHhCccc--cChhchHHHHhh
Q 043391 2 ALKHYDLAIRLEASGDLTECWNPLMKLKSCSNEIVIFFLNSQAD--IGLDYCHAIDII 57 (100)
Q Consensus 2 ~~~~~~l~~rl~~~~~~~~Cwssl~~v~gC~~EI~~~~l~G~~~--Ig~~CC~Ai~~I 57 (100)
++.+++|...|+. .+...-.=.=.....|+.......++-.+. +=.+||-+++.-
T Consensus 127 aF~~t~L~~~L~~-~gi~~lvv~Gv~T~~CV~~Ta~~A~~~gy~v~Vv~Da~~s~~~e 183 (207)
T d1nf9a_ 127 AFFHSDLLQRMRA-AGRDQLVLCGVYAHVGVLISTVDAYSNDIQPFLVADAIADFSEA 183 (207)
T ss_dssp TTTTSSHHHHHHH-TTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSSHH
T ss_pred ccccchHHHHHHH-cCCceeEEecccccccHHHHHHHHHHCCCEEEEEccccCCCCHH
Confidence 4567888999983 344444444556677999988888888886 778888776643
No 7
>d1bu2a2 a.74.1.1 (A:149-250) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=7.40 E-value=45 Score=20.62 Aligned_cols=16 Identities=31% Similarity=0.997 Sum_probs=13.0
Q ss_pred hHHHHhhhcCchhhhhc
Q 043391 51 CHAIDIITHNCWPAMLT 67 (100)
Q Consensus 51 C~Ai~~I~~~CWP~mFp 67 (100)
|+|+. |-.+=||++|-
T Consensus 12 c~alk-ipe~~wpql~e 27 (102)
T d1bu2a2 12 CNALK-IPEDLWPQLYE 27 (102)
T ss_dssp HHHTT-CCTTSHHHHHH
T ss_pred hhhcc-CcHHHhHHHHH
Confidence 78877 67789999875
No 8
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.99 E-value=55 Score=16.21 Aligned_cols=10 Identities=10% Similarity=0.451 Sum_probs=7.2
Q ss_pred hhhhhcccCC
Q 043391 78 ILRGYYDASS 87 (100)
Q Consensus 78 ~LKg~C~~~~ 87 (100)
-+.|||++..
T Consensus 12 YvqGyCtrge 21 (29)
T d2cqea2 12 YITGFCARAE 21 (29)
T ss_dssp TTTTCCSCST
T ss_pred heeeeecCCc
Confidence 4678898764
No 9
>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}
Probab=5.89 E-value=1.9e+02 Score=16.38 Aligned_cols=34 Identities=15% Similarity=0.405 Sum_probs=23.5
Q ss_pred ccCCcchHHHHHHHHHhCccccChhchHHHHhhhcCchhh
Q 043391 25 LMKLKSCSNEIVIFFLNSQADIGLDYCHAIDIITHNCWPA 64 (100)
Q Consensus 25 l~~v~gC~~EI~~~~l~G~~~Ig~~CC~Ai~~I~~~CWP~ 64 (100)
.+++..|...|+ ..+ ....+||.-+++ ..-|.=.
T Consensus 4 p~~L~~C~~Ai~---~g~--~PS~~CC~kLke-Q~~ClC~ 37 (67)
T d1tuka1 4 ASQLAVCASAIL---SGA--KPSGECCGNLRA-QQGCFCQ 37 (67)
T ss_dssp GGGGGGGHHHHH---HCC--CCCHHHHHHHHH-HGGGHHH
T ss_pred hhhccccHHHHh---cCC--CCcHHHHHHHHh-cCCccce
Confidence 457888988872 222 488999999886 4567644
No 10
>d2cora2 g.39.1.3 (A:8-42) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.77 E-value=46 Score=17.21 Aligned_cols=28 Identities=14% Similarity=0.338 Sum_probs=19.7
Q ss_pred cChhchHHHHhhhcCchhhhhcCCCCCCc
Q 043391 46 IGLDYCHAIDIITHNCWPAMLTSLGFTTK 74 (100)
Q Consensus 46 Ig~~CC~Ai~~I~~~CWP~mFps~pf~p~ 74 (100)
+|+.=|+--..|.++ -|.||-+-||.|.
T Consensus 6 lGk~vC~KCh~iIdd-~pL~Fr~d~YHp~ 33 (35)
T d2cora2 6 LGKYICQKCHAIIDE-QPLIFKNDPYHPD 33 (35)
T ss_dssp CCCCBCTTTCCBCCS-CCCCCSSSCCCTT
T ss_pred hhhHHHHHHHhhhhc-CcceecCCCCCCC
Confidence 566655555555556 8999999998873
Done!