Query 043392
Match_columns 496
No_of_seqs 218 out of 1382
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 04:36:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043392.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043392hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 3.1E-61 6.7E-66 493.9 31.3 391 63-485 23-436 (437)
2 PTZ00206 amino acid transporte 100.0 5.3E-55 1.1E-59 459.4 31.1 383 76-484 58-465 (467)
3 KOG1304 Amino acid transporter 100.0 2.8E-54 6E-59 435.2 31.5 368 77-482 46-448 (449)
4 PLN03074 auxin influx permease 100.0 1E-48 2.2E-53 410.2 32.6 376 76-494 44-462 (473)
5 PF01490 Aa_trans: Transmembra 100.0 3.5E-51 7.5E-56 425.9 2.5 376 76-480 1-408 (409)
6 KOG1305 Amino acid transporter 100.0 1.5E-44 3.3E-49 368.9 23.6 384 77-487 5-409 (411)
7 KOG4303 Vesicular inhibitory a 100.0 1.2E-40 2.6E-45 317.2 0.5 367 75-486 114-517 (524)
8 COG0814 SdaC Amino acid permea 100.0 1.1E-29 2.3E-34 263.0 29.5 382 77-479 8-411 (415)
9 PRK10483 tryptophan permease; 99.9 1.1E-21 2.5E-26 200.3 26.8 345 74-451 7-373 (414)
10 PRK09664 tryptophan permease T 99.9 3.8E-21 8.2E-26 196.3 27.8 345 76-451 7-374 (415)
11 PF03222 Trp_Tyr_perm: Tryptop 99.9 8.8E-21 1.9E-25 195.3 29.0 345 77-454 2-368 (394)
12 PRK15132 tyrosine transporter 99.9 1E-20 2.2E-25 194.0 28.3 363 78-474 3-390 (403)
13 TIGR00837 araaP aromatic amino 99.9 5.8E-20 1.3E-24 189.7 22.2 340 83-451 2-359 (381)
14 PRK13629 threonine/serine tran 99.8 3.8E-16 8.2E-21 159.9 26.2 376 82-474 23-437 (443)
15 TIGR00814 stp serine transport 99.7 1E-15 2.2E-20 157.5 20.3 367 81-469 6-396 (397)
16 PRK10655 potE putrescine trans 99.1 2.4E-07 5.2E-12 97.6 31.4 230 75-318 5-245 (438)
17 TIGR00912 2A0309 spore germina 99.0 8.4E-08 1.8E-12 98.3 24.0 226 77-323 2-239 (359)
18 PRK10435 cadB lysine/cadaverin 99.0 3.4E-07 7.3E-12 96.4 29.0 226 74-321 3-246 (435)
19 TIGR03810 arg_ornith_anti argi 99.0 6.4E-07 1.4E-11 95.2 31.0 237 76-323 1-255 (468)
20 TIGR00905 2A0302 transporter, 99.0 1E-06 2.2E-11 93.8 31.2 231 75-320 6-256 (473)
21 TIGR00909 2A0306 amino acid tr 99.0 4.3E-07 9.3E-12 95.4 28.1 230 75-318 2-251 (429)
22 PRK10644 arginine:agmatin anti 99.0 1.2E-06 2.5E-11 92.6 30.9 226 75-317 7-246 (445)
23 PRK11021 putative transporter; 98.9 3.2E-06 6.9E-11 88.3 32.7 220 79-316 2-231 (410)
24 PRK11049 D-alanine/D-serine/gl 98.9 3E-06 6.5E-11 90.1 32.2 231 74-318 18-267 (469)
25 PRK10249 phenylalanine transpo 98.8 1.2E-05 2.5E-10 85.3 32.7 231 75-317 20-264 (458)
26 PRK15049 L-asparagine permease 98.8 7.5E-06 1.6E-10 87.7 31.5 235 75-322 27-280 (499)
27 PF13520 AA_permease_2: Amino 98.8 2.8E-06 6.1E-11 89.0 26.0 225 79-323 2-247 (426)
28 TIGR01773 GABAperm gamma-amino 98.8 9.6E-06 2.1E-10 85.8 30.2 227 74-318 10-257 (452)
29 PRK10746 putative transport pr 98.8 2.8E-05 6.2E-10 82.4 32.5 230 75-317 9-255 (461)
30 PRK11387 S-methylmethionine tr 98.7 2.9E-05 6.3E-10 82.6 31.8 228 75-317 13-261 (471)
31 TIGR00913 2A0310 amino acid pe 98.7 5.3E-05 1.2E-09 80.7 33.0 229 76-316 2-251 (478)
32 PRK10580 proY putative proline 98.7 5.6E-05 1.2E-09 80.1 32.5 229 75-316 8-253 (457)
33 PRK11357 frlA putative fructos 98.7 1E-05 2.3E-10 85.4 26.6 226 75-316 7-249 (445)
34 TIGR00906 2A0303 cationic amin 98.7 1.8E-05 3.8E-10 85.9 27.9 235 74-317 26-286 (557)
35 TIGR00930 2a30 K-Cl cotranspor 98.6 4.1E-05 8.9E-10 87.4 31.7 229 75-316 75-334 (953)
36 PRK10238 aromatic amino acid t 98.6 8.3E-05 1.8E-09 78.8 31.2 226 75-313 11-251 (456)
37 KOG1287 Amino acid transporter 98.6 4.3E-06 9.4E-11 86.6 20.0 344 74-456 10-391 (479)
38 TIGR00908 2A0305 ethanolamine 98.6 2.4E-05 5.1E-10 82.6 26.1 221 75-315 6-244 (442)
39 PRK10836 lysine transporter; P 98.6 0.00019 4.1E-09 76.8 32.6 234 75-320 14-263 (489)
40 TIGR00911 2A0308 L-type amino 98.5 3E-05 6.5E-10 83.2 25.7 234 74-318 40-291 (501)
41 PRK10197 gamma-aminobutyrate t 98.5 0.00012 2.5E-09 77.4 28.6 215 88-316 4-235 (446)
42 PF03845 Spore_permease: Spore 98.4 3.2E-05 7E-10 77.9 20.0 222 78-323 2-235 (320)
43 COG0531 PotE Amino acid transp 98.2 0.0014 3.1E-08 69.2 27.6 63 256-323 200-262 (466)
44 TIGR03813 put_Glu_GABA_T putat 98.1 0.0031 6.6E-08 67.2 29.1 54 265-323 202-255 (474)
45 TIGR00907 2A0304 amino acid pe 98.0 0.01 2.2E-07 63.3 30.2 50 258-312 218-267 (482)
46 PRK15238 inner membrane transp 98.0 0.019 4.2E-07 61.5 31.2 54 257-315 211-264 (496)
47 COG1113 AnsP Gamma-aminobutyra 97.9 0.0031 6.7E-08 64.9 22.9 343 76-450 13-388 (462)
48 COG0833 LysP Amino acid transp 97.8 0.037 7.9E-07 58.4 28.7 229 75-312 43-284 (541)
49 TIGR00910 2A0307_GadC glutamat 97.6 0.031 6.8E-07 60.1 26.6 50 260-314 197-246 (507)
50 TIGR03428 ureacarb_perm permea 97.6 0.13 2.8E-06 54.9 32.8 62 257-323 213-274 (475)
51 PF00324 AA_permease: Amino ac 97.4 0.0043 9.4E-08 66.1 16.4 228 88-323 7-261 (478)
52 KOG1286 Amino acid transporter 97.3 0.009 2E-07 64.3 17.3 236 75-316 29-286 (554)
53 PRK11375 allantoin permease; P 97.2 0.27 5.9E-06 52.5 26.5 65 80-153 36-100 (484)
54 TIGR00800 ncs1 NCS1 nucleoside 97.1 0.46 1E-05 50.1 27.3 62 256-323 206-272 (442)
55 KOG3832 Predicted amino acid t 97.1 0.0008 1.7E-08 61.4 5.0 51 82-132 16-66 (319)
56 COG3949 Uncharacterized membra 95.8 2 4.3E-05 42.8 20.2 69 81-153 6-77 (349)
57 KOG1289 Amino acid transporter 95.6 3.8 8.2E-05 43.6 24.1 49 255-308 250-298 (550)
58 TIGR02358 thia_cytX probable h 95.5 3.6 7.7E-05 42.6 28.4 210 80-323 7-233 (386)
59 TIGR02119 panF sodium/pantothe 94.4 8.3 0.00018 41.0 28.4 76 75-153 39-118 (471)
60 PF00474 SSF: Sodium:solute sy 94.3 1.1 2.4E-05 46.5 14.8 75 75-153 5-80 (406)
61 PRK09442 panF sodium/panthothe 94.2 9.3 0.0002 40.8 29.5 76 75-153 40-119 (483)
62 COG1914 MntH Mn2+ and Fe2+ tra 93.6 11 0.00023 39.4 28.4 55 397-451 323-378 (416)
63 TIGR00813 sss transporter, SSS 92.8 14 0.00029 38.5 23.6 74 76-153 3-77 (407)
64 COG0591 PutP Na+/proline sympo 92.7 17 0.00036 39.1 28.6 84 65-153 29-116 (493)
65 PRK11017 codB cytosine permeas 89.1 31 0.00067 35.9 26.4 13 141-153 70-82 (404)
66 COG1953 FUI1 Cytosine/uracil/t 87.4 43 0.00094 35.6 27.7 96 140-235 101-217 (497)
67 PF02554 CstA: Carbon starvati 82.5 54 0.0012 33.5 14.9 70 78-153 52-125 (376)
68 TIGR00835 agcS amino acid carr 79.5 86 0.0019 32.9 23.2 40 78-118 47-87 (425)
69 TIGR02121 Na_Pro_sym sodium/pr 76.8 1.1E+02 0.0024 32.7 29.2 35 75-109 35-70 (487)
70 COG0814 SdaC Amino acid permea 76.6 15 0.00033 38.4 9.5 138 299-452 227-377 (415)
71 PRK15015 carbon starvation pro 73.4 47 0.001 36.5 12.1 69 81-153 86-156 (701)
72 PRK12488 acetate permease; Pro 71.2 1.6E+02 0.0035 32.0 30.1 35 75-109 66-101 (549)
73 PRK10484 putative transporter; 71.1 1.6E+02 0.0034 31.8 28.1 75 75-153 37-112 (523)
74 KOG2466 Uridine permease/thiam 70.8 1.5E+02 0.0033 31.5 14.8 103 71-176 48-168 (572)
75 PF02133 Transp_cyt_pur: Perme 70.2 5.6 0.00012 41.8 4.5 41 274-320 219-259 (440)
76 PF05525 Branch_AA_trans: Bran 69.7 1.5E+02 0.0033 31.1 19.0 45 79-123 4-51 (427)
77 TIGR00796 livcs branched-chain 63.5 1.9E+02 0.004 29.9 24.1 39 86-124 3-44 (378)
78 TIGR03648 Na_symport_lg probab 63.0 2.3E+02 0.005 30.8 29.7 75 75-153 31-106 (552)
79 PRK15419 proline:sodium sympor 62.8 2.2E+02 0.0048 30.5 29.7 35 75-109 39-74 (502)
80 COG0733 Na+-dependent transpor 62.0 2.1E+02 0.0046 30.1 20.5 96 79-175 10-120 (439)
81 PF00209 SNF: Sodium:neurotran 60.6 2.5E+02 0.0053 30.3 23.0 91 79-172 6-111 (523)
82 COG1966 CstA Carbon starvation 60.0 2E+02 0.0043 31.1 13.3 72 78-153 52-125 (575)
83 KOG2083 Na+/K+ symporter [Inor 57.2 31 0.00067 37.3 6.9 91 80-173 37-142 (643)
84 PF12046 DUF3529: Protein of u 55.7 20 0.00043 32.4 4.5 86 42-132 41-129 (173)
85 KOG4812 Golgi-associated prote 55.2 25 0.00054 33.4 5.2 65 410-478 164-243 (262)
86 TIGR02711 symport_actP cation/ 50.7 3.6E+02 0.0079 29.3 30.9 74 75-153 66-141 (549)
87 COG1457 CodB Purine-cytosine p 48.9 3.5E+02 0.0076 28.6 25.4 122 187-323 129-256 (442)
88 PF01566 Nramp: Natural resist 48.2 3.1E+02 0.0067 27.8 22.0 30 188-217 91-122 (358)
89 PRK13183 psbN photosystem II r 44.8 22 0.00047 24.6 2.3 28 297-324 6-33 (46)
90 PF02468 PsbN: Photosystem II 44.6 23 0.00051 24.1 2.4 28 298-325 4-31 (43)
91 CHL00020 psbN photosystem II p 42.9 21 0.00045 24.3 1.9 28 297-324 3-30 (43)
92 KOG2082 K+/Cl- cotransporter K 42.2 5.7E+02 0.012 29.1 13.6 67 413-481 557-627 (1075)
93 PRK09395 actP acetate permease 35.8 6E+02 0.013 27.5 30.4 75 75-153 68-143 (551)
94 PF05805 L6_membrane: L6 membr 35.1 89 0.0019 28.9 5.4 58 428-485 49-117 (195)
95 PRK15433 branched-chain amino 33.7 5.9E+02 0.013 26.9 14.9 42 79-120 9-53 (439)
96 TIGR02901 QoxD cytochrome aa3 30.4 3E+02 0.0064 22.3 8.4 23 461-483 68-90 (94)
97 PHA02680 ORF090 IMV phosphoryl 30.3 92 0.002 24.7 4.0 56 262-323 16-71 (91)
98 PRK10582 cytochrome o ubiquino 30.3 3.2E+02 0.007 22.8 8.6 24 461-484 77-100 (109)
99 PF06800 Sugar_transport: Suga 29.7 4.4E+02 0.0095 25.8 9.6 53 399-451 196-248 (269)
100 COG5052 YOP1 Protein involved 28.1 4.7E+02 0.01 23.9 8.6 16 375-390 19-34 (186)
101 TIGR02847 CyoD cytochrome o ub 28.0 3.3E+02 0.0072 22.1 8.5 24 461-484 66-89 (96)
102 PF00689 Cation_ATPase_C: Cati 23.3 2E+02 0.0044 25.6 5.9 23 408-430 134-156 (182)
103 PRK00701 manganese transport p 21.2 9.8E+02 0.021 25.2 28.2 12 142-153 94-105 (439)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-61 Score=493.87 Aligned_cols=391 Identities=35% Similarity=0.657 Sum_probs=346.1
Q ss_pred CCCCCCcccccccCCCchhHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhcc---ccccCC
Q 043392 63 LDPQDAWLPITESRNGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLH---ESESGT 139 (496)
Q Consensus 63 ~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~---~~~~~~ 139 (496)
+.++|+|.+.+++|+++++++++|.++.++|.|+|+||||++++||+.|+++++++++++.||.++|.+|. +...++
T Consensus 23 ~~~~~~~~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~ 102 (437)
T KOG1303|consen 23 KSDVDDWDPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGK 102 (437)
T ss_pred ccccccCCccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 34677888888999999999999999999999999999999999999999999999999999999999984 445677
Q ss_pred ccCcHHHHHHHHhh----------------hHHHHHHHHHhhHHHHHHHHhhcCCCcccccccccchhhhhhHHHHHHhh
Q 043392 140 RYSRYLRLSMAAFG----------------GTCVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLA 203 (496)
Q Consensus 140 ~~~sy~~l~~~~fG----------------G~~i~y~i~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~ 203 (496)
|+++|.|+++++|| |.|+.|++.+||++..+++..|.+. ..++.+.|+++++++++|++
T Consensus 103 r~~~Y~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~-----~~l~~~~f~iif~~i~~~~s 177 (437)
T KOG1303|consen 103 RRYRYPDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLND-----NSLDKQYFIIIFGLIVLPLS 177 (437)
T ss_pred cCCChHHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-----ccccceehhhhHHHHHHHHH
Confidence 88999999999999 9999999999999999998877621 14446899999999999999
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHhhheeeeeccCCCCcccCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcC
Q 043392 204 QLPNLNSIAGVSLIGAITAVSYCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTM 283 (496)
Q Consensus 204 ~l~~l~~L~~~S~~~~~~~~~~~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m 283 (496)
++||+++++++|..|+++++.|.++.++.++.+|........+.....+... .++++|+++|||+||+++||||++|
T Consensus 178 ~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~---~f~a~g~iaFaf~gH~v~peIq~tM 254 (437)
T KOG1303|consen 178 QLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPT---VFTALGIIAFAYGGHAVLPEIQHTM 254 (437)
T ss_pred HCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcc---hhhhhhheeeeecCCeeeeehHhhc
Confidence 9999999999999999999999999999988887443222111111111111 1789999999999999999999999
Q ss_pred CCCCCCCcccCcchhhhhHHHHHHHHHHhhhhhhhhcccCccccccccccCCCCCCChhhhhhhccCCCchhHHHHHHHH
Q 043392 284 PSTAKKPSRIPMWRGVKFAYLIIAMCLFPLAIGGYSAYGNLANDIYDAYCQMPGNEGMFDALHKYHNHDTSKVLLGLTSL 363 (496)
Q Consensus 284 ~~~~k~P~~~~m~~~v~~s~~i~~~~Y~~~g~~GY~~fG~~~~~~~~~i~~~~~~~~il~~~~~~~g~~~~~~l~~ia~~ 363 (496)
|+|.+ |+|++.+++.+++++|+++++.||++||| +++ +|++.++ +.+.|+.+.+++
T Consensus 255 ----k~p~~--f~~~~lis~~~~~~~y~~vai~GY~aFG~----------~~~--~~il~s~------~~p~~~~~~ani 310 (437)
T KOG1303|consen 255 ----KSPPK--FKKALLISYIIVTFLYFPVAIIGYWAFGD----------SVP--DNILLSL------QPPTWLIALANI 310 (437)
T ss_pred ----CCchh--hhhHHHHHHHHHHHHHHHHHHhhhhhhcc----------ccc--hhhhhcc------cCchhHHHHHHH
Confidence 66766 77999999999999999999999999999 898 7999987 368899999999
Q ss_pred HHHHHHhhhhccccchhHHHHHHhhhccCCC-C-CcchhHHHHHHHHHHHHHHHHHhCcChHHHHHHHhhhHh-hhhhhH
Q 043392 364 FVVISSLSSFQIFAMPVFDNLEFKYTSKYNK-P-CPWWLRSGIRVFFGSVEFFISAALPFLRNLAALIGGIAL-PITLAY 440 (496)
Q Consensus 364 ~~~~~~l~sypl~~~p~~~~~e~~~~~~~~~-~-~~~~~r~~~r~~~~~~~~~iA~~iP~~~~v~~lvGa~~~-~l~fil 440 (496)
++.+|++.+|+++++|+++.+|+....++++ + +..+.|.+.|+.+++.++++|+.+|+|+++++++||+.. ++++++
T Consensus 311 ~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~il 390 (437)
T KOG1303|consen 311 LIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFIL 390 (437)
T ss_pred HHHHHHhhhhhhhhcchHHHHHHHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998755441 1 235789999999999999999999999999999999999 999999
Q ss_pred hHHHHHHHhCCCCcchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Q 043392 441 PCFMWIHIRKPTTYSAIWGLNWAL-GILGMVLSILAVIGATWSLAT 485 (496)
Q Consensus 441 P~ll~lk~~~~~~~~~~~~~~~~l-~~~g~~~~v~~~~~si~~ii~ 485 (496)
||+||++++|+++++.+|+++|.+ .++|+++++...++++++++.
T Consensus 391 P~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~ 436 (437)
T KOG1303|consen 391 PCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLII 436 (437)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 799999999999999999885
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=5.3e-55 Score=459.43 Aligned_cols=383 Identities=16% Similarity=0.201 Sum_probs=304.5
Q ss_pred CCCchhHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh--
Q 043392 76 RNGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG-- 153 (496)
Q Consensus 76 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG-- 153 (496)
++|+..+++||++|+++|+|+|+||+||+++||++|++++++++.++.||+++|.+++++ .+.++|+|+++++||
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~---~~~~sY~~la~~~~G~~ 134 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK---TNIRTYEGVARVLLGPW 134 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCCCHHHHHHHHhCHH
Confidence 478899999999999999999999999999999999999999999999999999999874 235799999999999
Q ss_pred --------------hHHHHHHHHHhhHHHHHHHHhhcCCCcccccccccchhhhhhHHHHHHhhcCCCCchhhHHHHHHH
Q 043392 154 --------------GTCVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQLPNLNSIAGVSLIGA 219 (496)
Q Consensus 154 --------------G~~i~y~i~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~~l~~l~~L~~~S~~~~ 219 (496)
|+|++|+++.||.++.+++....+ +.......++..+.+++.++++|++++|++++|+++|.+++
T Consensus 135 g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~-~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~ 213 (467)
T PTZ00206 135 GSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAP-DFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAV 213 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-chhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHH
Confidence 999999999999999886531110 00000011123344556678899999999999999999998
Q ss_pred HHHHHHHHhhheeeeeccCCCC---cccCccc-cc-cchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccC
Q 043392 220 ITAVSYCTIIWVVSVIKDRPVG---VSYEPVK-EI-SDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIP 294 (496)
Q Consensus 220 ~~~~~~~~ii~~~~i~~g~~~~---~~~~~~~-~~-~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~ 294 (496)
++.+...+.+++.+..++.+++ .++.+.. .. ...+...+++.++|+++|||.||.+++++++|| |+|+.++
T Consensus 214 ~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M----~~~t~~~ 289 (467)
T PTZ00206 214 SFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDM----TNRSVGK 289 (467)
T ss_pred HHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhh----cccchhH
Confidence 7766555555555554443322 2221110 00 011122467899999999999999999999999 6777777
Q ss_pred cchhhhhHHHHHHHHHHhhhhhhhhcccCccccccccccCCCCCCChhhhhhhccCCCchhHHHHHHHHHHHHHHhhhhc
Q 043392 295 MWRGVKFAYLIIAMCLFPLAIGGYSAYGNLANDIYDAYCQMPGNEGMFDALHKYHNHDTSKVLLGLTSLFVVISSLSSFQ 374 (496)
Q Consensus 295 m~~~v~~s~~i~~~~Y~~~g~~GY~~fG~~~~~~~~~i~~~~~~~~il~~~~~~~g~~~~~~l~~ia~~~~~~~~l~syp 374 (496)
|.+++..++.++.++|..+|++||++||+ +++ +|++.|+.+ ..+....+++++++++++++||
T Consensus 290 ~~~v~~~s~~i~~~lY~~~G~~GYl~fG~----------~v~--~~Illn~~p-----~~~~~~~v~~~~~~~~v~~syp 352 (467)
T PTZ00206 290 FVLASTIAMGMCFTMYVLTAFFGYMDFGR----------NVT--GSVLLMYDP-----VNEPAIMVGFVGVLVKLFVSYA 352 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccc----------ccc--hHHHHhCCC-----CCCchhhHHHHHHHHHHHHhhh
Confidence 88999999999999999999999999999 777 799998831 2234456788888999999999
Q ss_pred cccchhHHHHHHhhhccCCCCCcchhHHHHHHHHHHHHHHHHHhCcChHHHHHHHhhhHh-hhhhhHhHHHHHHH---hC
Q 043392 375 IFAMPVFDNLEFKYTSKYNKPCPWWLRSGIRVFFGSVEFFISAALPFLRNLAALIGGIAL-PITLAYPCFMWIHI---RK 450 (496)
Q Consensus 375 l~~~p~~~~~e~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~iP~~~~v~~lvGa~~~-~l~filP~ll~lk~---~~ 450 (496)
++.+|+++.+++.+..+.+ +.+.++|...+..++++++++|+++|+++.+++++||+++ .++|++|+++|++. ++
T Consensus 353 L~~~p~r~~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~ 431 (467)
T PTZ00206 353 LLGMACRNALYDVIGWDAR-KVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTW 431 (467)
T ss_pred hhhhhHHHHHHHHhCCCcc-cCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccH
Confidence 9999999999988643322 2245677777777778889999999999999999999999 99999999999984 23
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043392 451 PTTYSAIWGLNWALGILGMVLSILAVIGATWSLA 484 (496)
Q Consensus 451 ~~~~~~~~~~~~~l~~~g~~~~v~~~~~si~~ii 484 (496)
++...++|+.+++++++|++.+++||++++++.+
T Consensus 432 ~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 432 QKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred HhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 3333445678999999999999999999999986
No 3
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-54 Score=435.18 Aligned_cols=368 Identities=21% Similarity=0.299 Sum_probs=317.8
Q ss_pred CCchhHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccc---cccCCccCcHHHHHHHHhh
Q 043392 77 NGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHE---SESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 77 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~---~~~~~~~~sy~~l~~~~fG 153 (496)
..|..++..|++|.++|+|+|++|+||++.||+.|.+...+++.++.||+++|++|.. ++.+....+|++.++.++.
T Consensus 46 ~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a~~ 125 (449)
T KOG1304|consen 46 PTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESAME 125 (449)
T ss_pred CCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHHHc
Confidence 4678899999999999999999999999999999999999999999999999999953 2223345789999888764
Q ss_pred --------------------------hHHHHHHHHHhhHHHHHHHHhhcCCCcccccccccchhhhhhHHHHHHhhcCCC
Q 043392 154 --------------------------GTCVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQLPN 207 (496)
Q Consensus 154 --------------------------G~~i~y~i~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~~l~~ 207 (496)
|.|++|+++.+++++++.+.. ....++.+.|+.+...+.++++++||
T Consensus 126 ~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~-------~~~~~s~~~~i~~~~~~~lll~~Ir~ 198 (449)
T KOG1304|consen 126 GGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEH-------SPGVLSVRLYILIQLPPLLLLNLIRN 198 (449)
T ss_pred CCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhcc-------CCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999997621 12456678899999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHhhheeeeeccCCCCcccCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCC
Q 043392 208 LNSIAGVSLIGAITAVSYCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTA 287 (496)
Q Consensus 208 l~~L~~~S~~~~~~~~~~~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~ 287 (496)
++.|+.+|++|.++.++.+.++.++.+.+. ++.+.. .....+.+++.++|+.+|||+|+.+++|++++|
T Consensus 199 Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~--~~~~~~-----~~~~~~~~~~lf~GtaifafEGig~VLPlEn~M---- 267 (449)
T KOG1304|consen 199 LKILSPFSLFANVFILVGLAIIMYYLVQDL--PPTSDL-----PAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSM---- 267 (449)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHhcc--CCcccc-----ccccchhhhHHHHHHHHHHhccceEEEehhhcc----
Confidence 999999999999999999888888776552 222221 123457788999999999999999999999999
Q ss_pred CCCcccC-cchhhhhHHHHHHHHHHhhhhhhhhcccCccccccccc-cCCCCCCChhhhhhhccCCCchhHHHHHHHHHH
Q 043392 288 KKPSRIP-MWRGVKFAYLIIAMCLFPLAIGGYSAYGNLANDIYDAY-CQMPGNEGMFDALHKYHNHDTSKVLLGLTSLFV 365 (496)
Q Consensus 288 k~P~~~~-m~~~v~~s~~i~~~~Y~~~g~~GY~~fG~~~~~~~~~i-~~~~~~~~il~~~~~~~g~~~~~~l~~ia~~~~ 365 (496)
|+|++++ -.+++..++.++.++|+.+|++||++||| |++++| +|+| .+ |+...+++++
T Consensus 268 k~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~---~v~~sITLNLP--~~---------------~l~~~Vkl~~ 327 (449)
T KOG1304|consen 268 KKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGD---DVKGSITLNLP--QE---------------ILSQTVKLLL 327 (449)
T ss_pred cChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccc---cccceEEecCC--cc---------------HHHHHHHHHH
Confidence 7898876 33677789999999999999999999999 677777 7777 23 4445789999
Q ss_pred HHHHhhhhccccchhHHHHHHhhhccCCCCCcchhHHHHHHHHHHHHHHHHHhCcChHHHHHHHhhhHh-hhhhhHhHHH
Q 043392 366 VISSLSSFQIFAMPVFDNLEFKYTSKYNKPCPWWLRSGIRVFFGSVEFFISAALPFLRNLAALIGGIAL-PITLAYPCFM 444 (496)
Q Consensus 366 ~~~~l~sypl~~~p~~~~~e~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~iP~~~~v~~lvGa~~~-~l~filP~ll 444 (496)
.++.+.+||+|.+|..+.+|+.+.+|.++++.++....+|..+++++..+|.++||++.+++++||+++ .+.+++|+++
T Consensus 328 ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~li 407 (449)
T KOG1304|consen 328 AIAIFLTYPLQFYVPIEIIEPGIRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLI 407 (449)
T ss_pred HHHHHHcCchhhhhhHHHHHHhHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHH
Confidence 999999999999999999999887665544467889999999999999999999999999999999999 9999999999
Q ss_pred HHHHhCCCC---cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043392 445 WIHIRKPTT---YSAIWGLNWALGILGMVLSILAVIGATWS 482 (496)
Q Consensus 445 ~lk~~~~~~---~~~~~~~~~~l~~~g~~~~v~~~~~si~~ 482 (496)
+++.++++. +.++++.|.+++++|++..++|+|.++.+
T Consensus 408 el~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~ 448 (449)
T KOG1304|consen 408 ELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKE 448 (449)
T ss_pred HHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 999987654 35778899999999999999999999875
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=1e-48 Score=410.23 Aligned_cols=376 Identities=16% Similarity=0.227 Sum_probs=297.3
Q ss_pred CCCchhHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhcccc----c--cCCc----cCcHH
Q 043392 76 RNGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHES----E--SGTR----YSRYL 145 (496)
Q Consensus 76 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~----~--~~~~----~~sy~ 145 (496)
++++..++.+|+++..+|.|+|+||+||+++||++|+++++++++++.||.++|.+|+.+ . ++.+ ..+|.
T Consensus 44 ~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~ 123 (473)
T PLN03074 44 HGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWF 123 (473)
T ss_pred CCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999987321 1 1111 13789
Q ss_pred HHHHHHhh----------------hHHHHHHHHHhhHHHHHHHHhhcCCCcccccccccchhhhhhHHHHHHhhcCCCCc
Q 043392 146 RLSMAAFG----------------GTCVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQLPNLN 209 (496)
Q Consensus 146 ~l~~~~fG----------------G~~i~y~i~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~~l~~l~ 209 (496)
|+++..+| +.|+.|++..++++..+ + ..++.+.|+++++++++|++++|+++
T Consensus 124 e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l-----~-------~~~~~~~~~~i~~~v~~~~~~i~sl~ 191 (473)
T PLN03074 124 EVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYI-----N-------DNLDKRTWTYIFGACCATTVFIPSFH 191 (473)
T ss_pred HHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhh-----C-------CCcCCCeEEeehHHHHHHHHHccCHH
Confidence 99888888 55666666555554432 1 23456889999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhheeeeeccCCCCcccCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCC
Q 043392 210 SIAGVSLIGAITAVSYCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKK 289 (496)
Q Consensus 210 ~L~~~S~~~~~~~~~~~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~ 289 (496)
+++++|.+|..+++.+...+++.++.++..++.+++ ...++..++.++++++|||+||.++|+|+++| |+
T Consensus 192 ~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~------~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M----~~ 261 (473)
T PLN03074 192 NYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHS------GPTKLVLYFTGATNILYTFGGHAVTVEIMHAM----WK 261 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC------CchhHHHHHHHHHHHHHHhcccccHHHHHHhc----cC
Confidence 999999999887666544444444444443444332 12345677888899999999999999999999 78
Q ss_pred CcccCcchhhhhHHHHHHHHHHhhhhhhhhcccCccccccccccCCCCCCChhhhhhhccCCCchhHHHHHHHHHHHHHH
Q 043392 290 PSRIPMWRGVKFAYLIIAMCLFPLAIGGYSAYGNLANDIYDAYCQMPGNEGMFDALHKYHNHDTSKVLLGLTSLFVVISS 369 (496)
Q Consensus 290 P~~~~m~~~v~~s~~i~~~~Y~~~g~~GY~~fG~~~~~~~~~i~~~~~~~~il~~~~~~~g~~~~~~l~~ia~~~~~~~~ 369 (496)
|++++ +....++..+..+|..+|+.||++||| ++..+++.+.++ +.+.+ ..+++++++++.
T Consensus 262 P~~F~--~~~~l~~~~v~~~y~~~~~~gY~~fG~----------~~~~~s~~l~~l------p~~~~-~~~~~~~~~i~~ 322 (473)
T PLN03074 262 PQKFK--YIYLAATLYVLTLTLPSAAAVYWAFGD----------ELLTHSNAFSLL------PRSGW-RDAAVILMLIHQ 322 (473)
T ss_pred hhccc--chHHHHHHHHHHHHHHHHHeeeeeech----------hhhhchhHHhcC------CCchH-HHHHHHHHHHHH
Confidence 99887 777788888999999999999999999 433012334333 22222 467899999999
Q ss_pred hhhhccccchhHHHHHHhhhccCCCCCcchhHHHHHHHHHHHHHHHHHhCcChHHHHHHHhhhHh-hhhhhHhHHHHHHH
Q 043392 370 LSSFQIFAMPVFDNLEFKYTSKYNKPCPWWLRSGIRVFFGSVEFFISAALPFLRNLAALIGGIAL-PITLAYPCFMWIHI 448 (496)
Q Consensus 370 l~sypl~~~p~~~~~e~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~iP~~~~v~~lvGa~~~-~l~filP~ll~lk~ 448 (496)
+.+|+++..|+.+.+|+....+. .+..+.|.++|+.+++.++++|..+|+|+++++|+||+++ .++|++|+++|++.
T Consensus 323 ~~sy~l~~~p~~~~~e~~~~~~~--~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~ 400 (473)
T PLN03074 323 FITFGFACTPLYFVWEKAIGVHD--TKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLT 400 (473)
T ss_pred HHHHHHHHhhHHHHHHHHhcccc--cccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999865432 2245789999999999999999999999999999999999 99999999999987
Q ss_pred hCCC-------------Ccchh--HHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCccccccc
Q 043392 449 RKPT-------------TYSAI--WGLNWALGILGMVL-SILAVIGATWSLATMGIEFHFFK 494 (496)
Q Consensus 449 ~~~~-------------~~~~~--~~~~~~l~~~g~~~-~v~~~~~si~~ii~~~~~~~~~~ 494 (496)
++++ ...++ .+.|+.+++++.++ .+.|+|+|+.+++++.++++.|.
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~ 462 (473)
T PLN03074 401 YRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFA 462 (473)
T ss_pred hcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhh
Confidence 6432 11222 37899999865555 68999999999999999998774
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=3.5e-51 Score=425.90 Aligned_cols=376 Identities=26% Similarity=0.472 Sum_probs=312.8
Q ss_pred CCCchhHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhcccccc-CCccCcHHHHHHHHhh-
Q 043392 76 RNGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESES-GTRYSRYLRLSMAAFG- 153 (496)
Q Consensus 76 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~-~~~~~sy~~l~~~~fG- 153 (496)
||+|++++++|++|+++|+|+|+||++|+++||+.|++++++++.++.||.++|+++++..+ +++..+|+|++++++|
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 58999999999999999999999999999999999999999999999999999999986432 4467999999999999
Q ss_pred ---------------hHHHHHHHHHhhHHHHHHHHhhcCCCcccccccccchhhhhhHHHHHHhhcCCCCchhhHHHHHH
Q 043392 154 ---------------GTCVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQLPNLNSIAGVSLIG 218 (496)
Q Consensus 154 ---------------G~~i~y~i~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~~l~~l~~L~~~S~~~ 218 (496)
|.|++|+++.+|.+.++.+..+++ ...++..|.++..++++|++++|+++++++.|.+|
T Consensus 81 ~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~------~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~ 154 (409)
T PF01490_consen 81 KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD------LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILG 154 (409)
T ss_pred cccccccchheeccccccceeEEEeeeeeeccccccccc------ccccccccccccccccccccccchhhHHHHHhhhh
Confidence 999999999999999987654331 23456778888888999999999999999999999
Q ss_pred HHHHHHHHHhhheeeeeccCCCCcccCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcc-cCcch
Q 043392 219 AITAVSYCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSR-IPMWR 297 (496)
Q Consensus 219 ~~~~~~~~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~-~~m~~ 297 (496)
.++.+.++.++++........++.+.. ..+.....++.+++.++|+++|||.||.++|++++|| |+|++ ++++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m----~~~~~~~~~~~ 229 (409)
T PF01490_consen 155 LFSIFYFIVIVVIYIISYGPGEPSGVP-SPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEM----KDPSKFKKMKK 229 (409)
T ss_pred hhccceeeeeecceeeeeecccccccc-cccccccchhhHHHHhhhhhhhhhhcccccceeeeec----cCCccccccce
Confidence 887665433333333332222222211 0111234466789999999999999999999999999 67777 56889
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhcccCccccccccccCCCCCCChhhhhhhccCCCchhHHHHHHHHHHHHHHhhhhcccc
Q 043392 298 GVKFAYLIIAMCLFPLAIGGYSAYGNLANDIYDAYCQMPGNEGMFDALHKYHNHDTSKVLLGLTSLFVVISSLSSFQIFA 377 (496)
Q Consensus 298 ~v~~s~~i~~~~Y~~~g~~GY~~fG~~~~~~~~~i~~~~~~~~il~~~~~~~g~~~~~~l~~ia~~~~~~~~l~sypl~~ 377 (496)
++..++.+++++|..+|++||++||+ +++ +|++.++. .+++...++++++.++++.+||++.
T Consensus 230 ~~~~s~~~~~~~y~~~g~~gy~~fg~----------~~~--~~il~n~~------~~~~~~~i~~~~~~i~~~~s~pl~~ 291 (409)
T PF01490_consen 230 VLSISMIICFIIYLLFGIFGYLAFGD----------SVQ--GNILLNLP------NDDVLIIIARILLVISLLLSYPLQL 291 (409)
T ss_pred eeeehhhhhhHHhhhhhhcccceeee----------eec--chhhhcCC------Ccccccccccccchhhhhhcccccc
Confidence 99999999999999999999999999 777 79999983 3336677899999999999999999
Q ss_pred chhHHHHHHhhhcc--------CCCCCcchhHHHHHHHHHHHHHHHHHhCcChHHHHHHHhhhHh-hhhhhHhHHHHHHH
Q 043392 378 MPVFDNLEFKYTSK--------YNKPCPWWLRSGIRVFFGSVEFFISAALPFLRNLAALIGGIAL-PITLAYPCFMWIHI 448 (496)
Q Consensus 378 ~p~~~~~e~~~~~~--------~~~~~~~~~r~~~r~~~~~~~~~iA~~iP~~~~v~~lvGa~~~-~l~filP~ll~lk~ 448 (496)
+|.++.+|+.+.++ ++++.++++|..+|+++++.++++|..+|+++++++++||+++ .++|++|+++|+|.
T Consensus 292 ~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~ 371 (409)
T PF01490_consen 292 FPARNSLENLLFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKL 371 (409)
T ss_pred chhHhhhhhheeccccccccccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHh
Confidence 99999999988642 2223356889999999999999999999999999999999999 99999999999999
Q ss_pred hCCCCcchhH-----HHHHHHHHHHHHHHHHHHHHHH
Q 043392 449 RKPTTYSAIW-----GLNWALGILGMVLSILAVIGAT 480 (496)
Q Consensus 449 ~~~~~~~~~~-----~~~~~l~~~g~~~~v~~~~~si 480 (496)
+++++.+.+| ..++..+++|++.++.+++.++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 372 FKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred hcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 8877654433 3367888899999999998765
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-44 Score=368.94 Aligned_cols=384 Identities=21% Similarity=0.275 Sum_probs=312.9
Q ss_pred CCchhHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh---
Q 043392 77 NGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG--- 153 (496)
Q Consensus 77 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG--- 153 (496)
+.+.+.+++|++|+++|+|+|++|+||++.|.+.|++++.+++.++.++.+++.+|.++. +. ++|+++++.++|
T Consensus 5 ~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~-~~--~ty~~l~~~~~g~~g 81 (411)
T KOG1305|consen 5 KTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKS-GE--RTYSSLGDLIFGKLG 81 (411)
T ss_pred ccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhc-CC--CCHHHHHHHHcCCCc
Confidence 457889999999999999999999999999999999999999999999999999998742 33 399999999999
Q ss_pred -------------hHHHHHHHHHhhHHHHHHHHhhcCCCcccccccccch-hhhhhHHHHHHhhcCCCCchhhHHHHHHH
Q 043392 154 -------------GTCVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVE-WYLVFICAAVVLAQLPNLNSIAGVSLIGA 219 (496)
Q Consensus 154 -------------G~~i~y~i~~g~~l~~~~~~~~~~~~~~~~~~l~~~~-~~ii~~~~~~pl~~l~~l~~L~~~S~~~~ 219 (496)
| |++|.++.||.++.+....... ++-..+..++.. |.++..++++||++.|+++++++.|.++.
T Consensus 82 ~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~-~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~s~ 159 (411)
T KOG1305|consen 82 KVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLD-EEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSALSL 159 (411)
T ss_pred eeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccc-cccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 5 6999999999999776543221 100001122233 56777788999999999999999999998
Q ss_pred HHHHHHHHhhheeeeeccC-CCCcccCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcchh
Q 043392 220 ITAVSYCTIIWVVSVIKDR-PVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRG 298 (496)
Q Consensus 220 ~~~~~~~~ii~~~~i~~g~-~~~~~~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~ 298 (496)
+..+....++++..+.... .++..+. ......+++.+.++++++|||.||.++.++++|| |||++++|.++
T Consensus 160 ~~~~~fv~~vv~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El----~~~s~~~i~~v 231 (411)
T KOG1305|consen 160 ASVVYFVVLVVYKYFQGPCALGRLSYL----VPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNEL----KDRSVKKIQRV 231 (411)
T ss_pred HHHHHHHHHHHHHHHhcccccCCcccc----cCCcchhhhhhhhhhhhheeeeccccceeeeeee----eCchHHHHHHH
Confidence 8776666655555544322 1222222 1112223678999999999999999999999999 78999999999
Q ss_pred hhhHHHHHHHHHHhhhhhhhhcccCccccccccccCCCCCCChhhhhhhccCCCchhHHHHHHHHHHHHHHhhhhccccc
Q 043392 299 VKFAYLIIAMCLFPLAIGGYSAYGNLANDIYDAYCQMPGNEGMFDALHKYHNHDTSKVLLGLTSLFVVISSLSSFQIFAM 378 (496)
Q Consensus 299 v~~s~~i~~~~Y~~~g~~GY~~fG~~~~~~~~~i~~~~~~~~il~~~~~~~g~~~~~~l~~ia~~~~~~~~l~sypl~~~ 378 (496)
...+...+.++|..+|.+||++||| ++. +|++.++.++.+.+...+....++..+.++++..+|+..+
T Consensus 232 ~~~~~~~~~~iy~~~g~~GYL~Fg~----------~v~--~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~f 299 (411)
T KOG1305|consen 232 SNIAIILATLIYLLTGLFGYLTFGD----------LVK--GNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLF 299 (411)
T ss_pred HHHHHHHHHHHHHHHHHhhhheecc----------cch--HHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999 777 7999988655443333345678999999999999999999
Q ss_pred hhHHHHHHhhhccCCC--CCcchhHHHHHHHHHHHHHHHHHhCcChHHHHHHHhhhHh-hhhhhHhHHHHHHHhCCCCcc
Q 043392 379 PVFDNLEFKYTSKYNK--PCPWWLRSGIRVFFGSVEFFISAALPFLRNLAALIGGIAL-PITLAYPCFMWIHIRKPTTYS 455 (496)
Q Consensus 379 p~~~~~e~~~~~~~~~--~~~~~~r~~~r~~~~~~~~~iA~~iP~~~~v~~lvGa~~~-~l~filP~ll~lk~~~~~~~~ 455 (496)
|++.++++.+.++..+ +.++.++.+++..++..+.+.|+.+|+++.+++++||+++ .++|++|+++|++.+|+ .+
T Consensus 300 Plr~~l~~~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~ 377 (411)
T KOG1305|consen 300 PLRMNLDELLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KS 377 (411)
T ss_pred hHHHHHHHHhcccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--cc
Confidence 9999988877543321 2356788888899999999999999999999999999999 99999999999999877 45
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 043392 456 AIWGLNWALGILGMVLSILAVIGATWSLATMG 487 (496)
Q Consensus 456 ~~~~~~~~l~~~g~~~~v~~~~~si~~ii~~~ 487 (496)
++....+...++++..++++++.-+.++..+.
T Consensus 378 ~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~ 409 (411)
T KOG1305|consen 378 REPLGALIFLILGVLLSIIGVAVMIYDLLAKN 409 (411)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56667788899999999999999888887654
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-40 Score=317.23 Aligned_cols=367 Identities=19% Similarity=0.306 Sum_probs=297.8
Q ss_pred cCCCchhHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccc--cC---CccCcHHHHHH
Q 043392 75 SRNGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESE--SG---TRYSRYLRLSM 149 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~--~~---~~~~sy~~l~~ 149 (496)
+.|.+.++|..|+.|++-|.=+++||+|...+||+ ++..++.++.+|+||+.+|++|..+. .| +.+++|.+++.
T Consensus 114 ~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~ 192 (524)
T KOG4303|consen 114 SEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIAD 192 (524)
T ss_pred CCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHH
Confidence 34678999999999999999999999999999996 99999999999999999999995432 12 23689999999
Q ss_pred HHhh-----------------hHHHHHHHHHhhHHHHHHHHhhcCCCcccccccccchhhhhhHHHHHHhhcCCCCchhh
Q 043392 150 AAFG-----------------GTCVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQLPNLNSIA 212 (496)
Q Consensus 150 ~~fG-----------------G~~i~y~i~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~~l~~l~~L~ 212 (496)
.+++ .+|+.|++..||.++.-++ ..+...+.|+++.++.++|.+++|+++-.+
T Consensus 193 ~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP----------~~svd~~sWm~i~~a~LLpc~FLk~Lk~VS 262 (524)
T KOG4303|consen 193 FCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFP----------GLSVDKASWMMITSASLLPCSFLKDLKIVS 262 (524)
T ss_pred HhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCC----------CCCccccchhhhhhHHHhhhHHHHHHHHHH
Confidence 9987 7899999999999986432 134456889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhheeeeeccCC---CCcccCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCC
Q 043392 213 GVSLIGAITAVSYCTIIWVVSVIKDRP---VGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKK 289 (496)
Q Consensus 213 ~~S~~~~~~~~~~~~ii~~~~i~~g~~---~~~~~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~ 289 (496)
.+|++..+.-++.-++++.||..+-.. ..+++. .+...++.++|+++|+|..|..+|.++..| ++
T Consensus 263 ~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fs--------idi~~fPisvG~iVFsYTSqIFLP~LEGNM----~~ 330 (524)
T KOG4303|consen 263 RLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFS--------IDINTFPISVGMIVFSYTSQIFLPNLEGNM----KN 330 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEE--------EEcccCceEEEEEEEeeeceeecccccccc----CC
Confidence 999999999888888888888765211 122222 234456789999999999999999999999 78
Q ss_pred CcccC-cchhhhhHHHHHHHHHHhhhhhhhhcccCccccccccccCCCCCCChhhhhhhccCCCchhHHHHHHHHHHHHH
Q 043392 290 PSRIP-MWRGVKFAYLIIAMCLFPLAIGGYSAYGNLANDIYDAYCQMPGNEGMFDALHKYHNHDTSKVLLGLTSLFVVIS 368 (496)
Q Consensus 290 P~~~~-m~~~v~~s~~i~~~~Y~~~g~~GY~~fG~~~~~~~~~i~~~~~~~~il~~~~~~~g~~~~~~l~~ia~~~~~~~ 368 (496)
|+++. |.+. +-+...++-..+|..||++||+.|+++-+. |+| + +-+..++++++++.
T Consensus 331 ps~Fn~Ml~W---sHIAAaVfK~~Fg~~~fLTf~~~TqevItn--nLp--~---------------qsfk~~VN~fLV~K 388 (524)
T KOG4303|consen 331 PSQFNVMLKW---SHIAAAVFKVVFGMLGFLTFGELTQEVITN--NLP--N---------------QSFKILVNLFLVVK 388 (524)
T ss_pred hhHheeeeeh---HHHHHHHHHHHHHHheeeeechhhHHHHhc--CCC--c---------------cchhhhhhHHHHHH
Confidence 99987 4444 444566777889999999999955522111 333 1 11234789999999
Q ss_pred HhhhhccccchhHHHHHHhhhcc---CCCC-C----c--chhHHHHHHHHHHHHHHHHHhCcChHHHHHHHhhhHh-hhh
Q 043392 369 SLSSFQIFAMPVFDNLEFKYTSK---YNKP-C----P--WWLRSGIRVFFGSVEFFISAALPFLRNLAALIGGIAL-PIT 437 (496)
Q Consensus 369 ~l~sypl~~~p~~~~~e~~~~~~---~~~~-~----~--~~~r~~~r~~~~~~~~~iA~~iP~~~~v~~lvGa~~~-~l~ 437 (496)
.+.|||+-.+.+.+.+|+-+... ...| | . +-+...+|..+++.+.++|+.+|.|..++|++|++++ .++
T Consensus 389 ALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLs 468 (524)
T KOG4303|consen 389 ALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLS 468 (524)
T ss_pred HHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHH
Confidence 99999997777777777765432 1111 1 1 2344678899999999999999999999999999999 999
Q ss_pred hhHhHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043392 438 LAYPCFMWIHIRKPTTYSAIWGLNWALGILGMVLSILAVIGATWSLATM 486 (496)
Q Consensus 438 filP~ll~lk~~~~~~~~~~~~~~~~l~~~g~~~~v~~~~~si~~ii~~ 486 (496)
|+.|+++|++++++..-..++..+..++++|..+++.|.|-|...+++.
T Consensus 469 FiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A 517 (524)
T KOG4303|consen 469 FIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRA 517 (524)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHH
Confidence 9999999999998777777888899999999999999999999998864
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.97 E-value=1.1e-29 Score=262.97 Aligned_cols=382 Identities=17% Similarity=0.187 Sum_probs=272.9
Q ss_pred CCchhHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh---
Q 043392 77 NGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG--- 153 (496)
Q Consensus 77 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG--- 153 (496)
+.+..++++++.+++||+|+|++|++++..|++++++++++.+..+++|.+++.|+..+.+. +..+|.+++++.+|
T Consensus 8 ~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~-~~~~~~~~~~~~~G~~~ 86 (415)
T COG0814 8 TSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPN-GKASITSLVEDYLGKKG 86 (415)
T ss_pred CcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcccHHHHHHHHhCcch
Confidence 45678999999999999999999999999999999999999999999999999999775322 22599999999999
Q ss_pred -------------hHHHHHHHHHhhHHHHHHHHhhcCCCcccccccccchhhhhhHHHHHHhhcCCCCchhhHHHHHHHH
Q 043392 154 -------------GTCVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQLPNLNSIAGVSLIGAI 220 (496)
Q Consensus 154 -------------G~~i~y~i~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~~l~~l~~L~~~S~~~~~ 220 (496)
|.+.+|.+..||.++++++.... ..+..+..+.+++..++.++++.++...++..|.+...
T Consensus 87 ~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~------~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~ 160 (415)
T COG0814 87 GILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFG------LNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFG 160 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcc------cCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 88999999999999998775332 01144566777788888889999999999999999877
Q ss_pred HHHHHHHhhheeeeeccCCCCcccCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcchhhh
Q 043392 221 TAVSYCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVK 300 (496)
Q Consensus 221 ~~~~~~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v~ 300 (496)
.....+....+..... +.....-.| ......+..+..++|+++|||+||+++++++++|+ +++++..+|+..
T Consensus 161 ~v~~~~~l~~~~~~~~-~~~~l~~~~---~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~----~~~~~~~~k~~~ 232 (415)
T COG0814 161 KVIYLVLLVVYLIPHW-NPANLFALP---SASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMR----KNSKKAVRKAIL 232 (415)
T ss_pred HHHHHHHHHHHHhccc-CHHHHhccc---ccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhc----cchhHHHHHHHH
Confidence 6555444443332221 111110000 00124567788999999999999999999999994 454444669999
Q ss_pred hHHHHHHHHHHhhhhhhhhcccCccccccccc-cCCCCCCChhhhhhhccCCCchhHHHHHHHHHHHHHHhhhhccccch
Q 043392 301 FAYLIIAMCLFPLAIGGYSAYGNLANDIYDAY-CQMPGNEGMFDALHKYHNHDTSKVLLGLTSLFVVISSLSSFQIFAMP 379 (496)
Q Consensus 301 ~s~~i~~~~Y~~~g~~GY~~fG~~~~~~~~~i-~~~~~~~~il~~~~~~~g~~~~~~l~~ia~~~~~~~~l~sypl~~~p 379 (496)
.+..+..++|..+++++|..+|+ ++++.+ .+-+|+..+++..... -....+....+++..+.+.+||--....
T Consensus 233 ~~~~~~~vlyi~~~~~~~~~~~~---~~~~~il~~~~~~~~~l~~~~~~---~~~~~~~~~~~~f~~~Ai~tSFlgv~lg 306 (415)
T COG0814 233 IGSLIALVLYILVGFFVFGCFGS---LVFGNILAAKEQNISLLSALAGV---INSPILSIALNIFALFAIATSFLGVYLG 306 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCc---ccHHHHHHccCchHHHHHHHHHh---hcchHHHHHHHHHHHHHHHHHHhCchhh
Confidence 99999999999999999999999 222333 2223111222222111 1122244455666667777776666667
Q ss_pred hHHHHHHhhhccC--CCCCcchhH--HHHHHHHHHHHHHHHHhCcChHHHHHHHhhhHh-hhhhhHhHHHHHHHhCCCCc
Q 043392 380 VFDNLEFKYTSKY--NKPCPWWLR--SGIRVFFGSVEFFISAALPFLRNLAALIGGIAL-PITLAYPCFMWIHIRKPTTY 454 (496)
Q Consensus 380 ~~~~~e~~~~~~~--~~~~~~~~r--~~~r~~~~~~~~~iA~~iP~~~~v~~lvGa~~~-~l~filP~ll~lk~~~~~~~ 454 (496)
.++..++.+...+ +++...+.+ .....+.++....++...|..+.+++.+|+..+ .+.++.|...+.|....+++
T Consensus 307 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~ 386 (415)
T COG0814 307 LFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVY 386 (415)
T ss_pred HHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeec
Confidence 7777777765411 111112222 222334446667788889999999999999999 99999999988777544443
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q 043392 455 SAIWGLNWALGILGMVLSILAVIGA 479 (496)
Q Consensus 455 ~~~~~~~~~l~~~g~~~~v~~~~~s 479 (496)
...+..++.++++|++.++...++.
T Consensus 387 ~g~~~~~~~v~~~Gi~~~~~~~~~~ 411 (415)
T COG0814 387 GGNFLLLLLVLLFGILVILSPFLAT 411 (415)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHH
Confidence 3322467788888888877766654
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.90 E-value=1.1e-21 Score=200.31 Aligned_cols=345 Identities=12% Similarity=0.066 Sum_probs=231.8
Q ss_pred ccCCCchhHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh
Q 043392 74 ESRNGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 74 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG 153 (496)
++++++.+.+++.+..+.||+|+|+||++-++.|+.++++++++++....||..++.|.+.+. ++..++..++++.+|
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~--~~g~~~~tma~~~LG 84 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNY--RIGSSFDTITKDLLG 84 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCHHHHHHHHcC
Confidence 445789999999999999999999999999999999999999999999999999999986543 235799999999999
Q ss_pred ----------------hHHHHHHHHHhhHHHHHHHHhhcCCCcccccccccchhhhhhHHHHHHhhc--CCCCchhhHHH
Q 043392 154 ----------------GTCVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQ--LPNLNSIAGVS 215 (496)
Q Consensus 154 ----------------G~~i~y~i~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~~--l~~l~~L~~~S 215 (496)
+.+++|+.-+|+.+++.++. .+ .+.+.+.-.++|+++.-...+ .|..+++...-
T Consensus 85 ~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~-~~-------~~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~l 156 (414)
T PRK10483 85 KGWNVVNGISIAFVLYILTYAYISASGSILHHTFAE-MS-------LNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIV 156 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHh-cC-------CCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 77889999999999988754 11 111222222333333322222 34455555555
Q ss_pred HHHHHHHHHHHHhhheeeeeccCCCCcccCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCc
Q 043392 216 LIGAITAVSYCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPM 295 (496)
Q Consensus 216 ~~~~~~~~~~~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m 295 (496)
..+.+.++...+....-.+......+...+ ....+..++.+++++++||+.|+++|++.+.++ +|++ +.
T Consensus 157 ~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~------~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~---~d~~--ki 225 (414)
T PRK10483 157 LGAKVITFFLTFGSLLGHVQPATLFNVAES------NASYAPYLLMTLPFCLASFGYHGNVPSLMKYYG---KDPK--TI 225 (414)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHhccccc------cchhHHHHHHHHHHHHhhccCCCcchHHHHHhC---cCHH--HH
Confidence 555443333222111111111000011111 112234577899999999999999999999995 3444 45
Q ss_pred chhhhhHHHHHHHHHHhhhhhhhhcccCccccccccc---cCCCCCCChhhhhhhccCCCchhHHHHHHHHHHHHHHhhh
Q 043392 296 WRGVKFAYLIIAMCLFPLAIGGYSAYGNLANDIYDAY---CQMPGNEGMFDALHKYHNHDTSKVLLGLTSLFVVISSLSS 372 (496)
Q Consensus 296 ~~~v~~s~~i~~~~Y~~~g~~GY~~fG~~~~~~~~~i---~~~~~~~~il~~~~~~~g~~~~~~l~~ia~~~~~~~~l~s 372 (496)
+|++..+..+..++|+..=......-+++ +....+ -|++ ..++.+.. .....++..++.++..+++.+|
T Consensus 226 r~~I~iGs~Iplv~yl~W~~~~lg~l~~~--~~~~~~~~~~ni~---~L~~~l~~---~~~~~~i~~~~~~Fa~~Ai~TS 297 (414)
T PRK10483 226 VKCLVYGTLMALALYTIWLLATMGNIPRP--EFIGIAEKGGNID---VLVQALSG---VLNSRSLDLLLVVFSNFAVASS 297 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHH--HHHHHHHcCCChH---HHHHHHHH---hcCChHHHHHHHHHHHHHHHHH
Confidence 59999999999999987433332222221 100000 0111 12233221 1223344456788888899999
Q ss_pred hccccchhHHHHHHhhhccCCCCCcchhHHHHHHHHHHHHHHHHHhCcC-hHHHHHHHhhhHhhhhhhHhHHHHHHHhCC
Q 043392 373 FQIFAMPVFDNLEFKYTSKYNKPCPWWLRSGIRVFFGSVEFFISAALPF-LRNLAALIGGIALPITLAYPCFMWIHIRKP 451 (496)
Q Consensus 373 ypl~~~p~~~~~e~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~iP~-~~~v~~lvGa~~~~l~filP~ll~lk~~~~ 451 (496)
|-=....++|.+++.++.++++ ..|...-....+...++|...|+ |-..+++.|.++..+..++|++|.+|.||+
T Consensus 298 FlGv~LGL~d~l~D~~k~~~~~----~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 298 FLGVTLGLFDYLADLFGFDDSA----MGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLAATIWAAIVPALLARASRKR 373 (414)
T ss_pred HHHHHHHHHHHHHHHhCCCCcc----ccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9888888999999988654332 23433344566888999999998 888999999775588889999999999975
No 10
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.89 E-value=3.8e-21 Score=196.29 Aligned_cols=345 Identities=13% Similarity=0.098 Sum_probs=228.7
Q ss_pred CCCchhHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh--
Q 043392 76 RNGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG-- 153 (496)
Q Consensus 76 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG-- 153 (496)
+|.+.+.+++.+..++||+|+|+||.+-++.|+.++++++++++....||..++.|.+.+. ++..++..++++.+|
T Consensus 7 ~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~--~~g~~l~tma~~~LG~~ 84 (415)
T PRK09664 7 KKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNY--PVGSSFNTITKDLIGNT 84 (415)
T ss_pred hccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCHHHHHHHHcChH
Confidence 3557788999999999999999999999999999999999999999999999999997543 235789999999999
Q ss_pred --------------hHHHHHHHHHhhHHHHHHHHhhcCCCcccccccccchhhhhhHHHHHHhhc--CCCCchhhHHHHH
Q 043392 154 --------------GTCVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQ--LPNLNSIAGVSLI 217 (496)
Q Consensus 154 --------------G~~i~y~i~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~~--l~~l~~L~~~S~~ 217 (496)
+.+++|+.-+|+.+++.+....+ -+.+.+.-.++++.+.-...+ .|-.+++...-..
T Consensus 85 g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~-------~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~ 157 (415)
T PRK09664 85 WNIISGITVAFVLYILTYAYISANGAIISETISMNLG-------YHANPRIVGICTAIFVASVLWISSLAASRITSLFLG 157 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhcc-------CCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 77889999999999988753211 111222222334433322222 2444555544444
Q ss_pred HHHHHHHHHHhhheeeeeccCCCCcccCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcch
Q 043392 218 GAITAVSYCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWR 297 (496)
Q Consensus 218 ~~~~~~~~~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~ 297 (496)
+.+.++...+....-.+. .+.....+.. ......+..++.++|++++||+.|+++|++.+.++ +++++. +|
T Consensus 158 ~~ii~f~~~~~~l~~~i~---~~~L~~~~~~-~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~---~d~~~~--~k 228 (415)
T PRK09664 158 LKIISFVIVFGSFFFQVD---YSILRDATST-TAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYG---KRKDKL--IK 228 (415)
T ss_pred HHHHHHHHHHHHHhhccc---HHHHhcCccc-cccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhC---ccHHHH--HH
Confidence 444333222211111111 1111100000 00001123467899999999999999999999995 444443 48
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhcccCccccccccc----cCCCCCCChhhhhhhccCCCchhHHHHHHHHHHHHHHhhhh
Q 043392 298 GVKFAYLIIAMCLFPLAIGGYSAYGNLANDIYDAY----CQMPGNEGMFDALHKYHNHDTSKVLLGLTSLFVVISSLSSF 373 (496)
Q Consensus 298 ~v~~s~~i~~~~Y~~~g~~GY~~fG~~~~~~~~~i----~~~~~~~~il~~~~~~~g~~~~~~l~~ia~~~~~~~~l~sy 373 (496)
.+..+..+..++|+..=. ..+|+-.++-...+ -|++ .++..+.+ .....++..++.++..+++.+||
T Consensus 229 aIl~Gs~IpLviY~~W~~---~ilG~lp~~~~~~~~~~g~nv~---~l~~s~~~---~~~~~~i~~~~~~Fa~~Ai~TSF 299 (415)
T PRK09664 229 SVVFGSLLALVIYLFWLY---CTMGNIPRESFKAIISSGGNVD---SLVKSFLG---TKQHGIIEFCLLVFSNLAVASSF 299 (415)
T ss_pred HHHHHHHHHHHHHHHHHH---HHhcCCCHHHHHHHHHcCCCch---HHHHHHHh---hccChHHHHHHHHHHHHHHHHHH
Confidence 888888888888875422 12222111000000 0232 23333321 12344666678888889999999
Q ss_pred ccccchhHHHHHHhhhccCCCCCcchhHHHHHHHHHHHHHHHHHhCcC-hHHHHHHHhhhHhhhhhhHhHHHHHHHhCC
Q 043392 374 QIFAMPVFDNLEFKYTSKYNKPCPWWLRSGIRVFFGSVEFFISAALPF-LRNLAALIGGIALPITLAYPCFMWIHIRKP 451 (496)
Q Consensus 374 pl~~~p~~~~~e~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~iP~-~~~v~~lvGa~~~~l~filP~ll~lk~~~~ 451 (496)
-=....++|.+.+.++.++++ ..|...-.+..+...++|.+.|+ |-..+++.|..+..+..++|++|-+|.||+
T Consensus 300 lGv~LGL~D~l~D~~~~~~~~----~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~~~il~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 300 FGVTLGLFDYLADLFKIDNSH----GGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLCATIWAVIIPAVLAIKARKK 374 (415)
T ss_pred HHHHHHHHHHHHHHhCCCCcc----ccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888999999988654332 23443344566888999999998 888999999875588889999999999976
No 11
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.89 E-value=8.8e-21 Score=195.26 Aligned_cols=345 Identities=19% Similarity=0.199 Sum_probs=227.4
Q ss_pred CCchhHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh---
Q 043392 77 NGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG--- 153 (496)
Q Consensus 77 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG--- 153 (496)
+.+.+++++.+..+.||+|+|+||++.+..|..++++++++++..++||..++.|+..+. ++..+|.+++++.+|
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~--~~~~~~~~~a~~~lG~~g 79 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNT--PEGSSLTSMAEKYLGKKG 79 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCHHHHHHHHhChHH
Confidence 456789999999999999999999999999999999999999999999999999986532 236899999999999
Q ss_pred -------------hHHHHHHHHHhhHHHHHHHHhhcCCCcccccccccchhhhhhHHHHHHhh--cCCCCchhhHHHHHH
Q 043392 154 -------------GTCVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLA--QLPNLNSIAGVSLIG 218 (496)
Q Consensus 154 -------------G~~i~y~i~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~--~l~~l~~L~~~S~~~ 218 (496)
+.+++|+.-+|+.+.+.+....+ .+.+.+.-.+++.++.-.+. -.|-..+...+-..+
T Consensus 80 ~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~-------~~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~~lv~~ 152 (394)
T PF03222_consen 80 GIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG-------TDLSPWLSSLLFTIIFGGIVYFGTKAVDRINRVLVFG 152 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC-------CCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 77889999999999988765332 11112222222222221111 122233333333333
Q ss_pred HHHHHHHHHhhheeeeeccCCCCcccCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcchh
Q 043392 219 AITAVSYCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRG 298 (496)
Q Consensus 219 ~~~~~~~~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~ 298 (496)
.+.++..... +.+.+-+.+..... .....++..++.++|++++||..|+++|++.+.++ +++++ .+|+
T Consensus 153 ~i~~~~~l~~---~~~p~~~~~~L~~~----~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~---~d~~k--~~~a 220 (394)
T PF03222_consen 153 MIISFIILVV---YLIPHWNPSNLLDA----PPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLG---GDPKK--IRKA 220 (394)
T ss_pred HHHHHHHHHH---HHhhhcCHHHhhcc----ccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhC---ccHHH--HHHH
Confidence 3322222111 11111111111110 11234566788999999999999999999999996 34443 4589
Q ss_pred hhhHHHHHHHHHHhhhhhhhhcccCcccc-ccccc-cCCCCCCChhhhhhhccCCCchhHHHHHHHHHHHHHHhhhhccc
Q 043392 299 VKFAYLIIAMCLFPLAIGGYSAYGNLAND-IYDAY-CQMPGNEGMFDALHKYHNHDTSKVLLGLTSLFVVISSLSSFQIF 376 (496)
Q Consensus 299 v~~s~~i~~~~Y~~~g~~GY~~fG~~~~~-~~~~i-~~~~~~~~il~~~~~~~g~~~~~~l~~ia~~~~~~~~l~sypl~ 376 (496)
+..+..+..++|+..-+. ..|+-+++ ..... .+-+ -+.+...+.. .....++..++.++..+++.+||-=.
T Consensus 221 i~~Gs~i~lv~yl~w~~~---~lg~l~~~~~~~~~~~~~~-~~~~~~~~~~---~~~s~~i~~~~~~fa~~Ai~TSFlGv 293 (394)
T PF03222_consen 221 IIIGSLIPLVMYLLWVFS---ILGSLPREQFAEAIAQGGN-VSALVSALAN---VSGSPWISILGSIFAFFAIATSFLGV 293 (394)
T ss_pred HHHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHhcCCC-hHHHHHHHHh---hcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888888865322 22321110 00000 0100 0112222211 12234556678889999999999888
Q ss_pred cchhHHHHHHhhhccCCCCCcchhHHHHHHHHHHHHHHHHHhCcC-hHHHHHHHhhhHh-hhhhhHhHHHHHHHhCCCCc
Q 043392 377 AMPVFDNLEFKYTSKYNKPCPWWLRSGIRVFFGSVEFFISAALPF-LRNLAALIGGIAL-PITLAYPCFMWIHIRKPTTY 454 (496)
Q Consensus 377 ~~p~~~~~e~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~iP~-~~~v~~lvGa~~~-~l~filP~ll~lk~~~~~~~ 454 (496)
..-++|.+++.++.++++ ..|...-....+...++|...|+ |-..+++.| ... .+..++|+++.+|.|++++.
T Consensus 294 ~lgl~d~l~d~~k~~~~~----~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~ 368 (394)
T PF03222_consen 294 YLGLFDFLADLFKLKNNS----SGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPK 368 (394)
T ss_pred HHHHHHHHHHHHcCCccc----cchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCC
Confidence 888999999988653222 33444445556778889999997 889999999 777 99999999999999876544
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.89 E-value=1e-20 Score=194.04 Aligned_cols=363 Identities=15% Similarity=0.107 Sum_probs=240.0
Q ss_pred CchhHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh----
Q 043392 78 GNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG---- 153 (496)
Q Consensus 78 ~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG---- 153 (496)
++.+.+++.+..+.||+|+|+||.+.+..|++++++++++++.+..|+.+++.|+..+. ++..++.+++++.+|
T Consensus 3 ~~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~--~~~~~~~~~a~~~LG~~g~ 80 (403)
T PRK15132 3 NRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHV--PADTGLGTLAKRYLGRYGQ 80 (403)
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCHHHHHHHHhChHHH
Confidence 46788999999999999999999999999999999999999999999999999985532 235789999999999
Q ss_pred ------------hHHHHHHHHHhhHHHHHHHHhhcCCCcccccccccchhhhhhHHHHHHhhcC--CCCchhhHHHHHHH
Q 043392 154 ------------GTCVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQL--PNLNSIAGVSLIGA 219 (496)
Q Consensus 154 ------------G~~i~y~i~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~~l--~~l~~L~~~S~~~~ 219 (496)
..+.+|+..+|+.+.+.+..+.++ +++...+.+++.++.....+. |-..++..+-..+.
T Consensus 81 ~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~-------~i~~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ 153 (403)
T PRK15132 81 WLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI-------SMSPTAGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAK 153 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC-------CCChHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 778899999999999887653331 222333444444433222222 22333433333333
Q ss_pred HHHHHHHHhhheeeeeccCCCCcccCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcchhh
Q 043392 220 ITAVSYCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGV 299 (496)
Q Consensus 220 ~~~~~~~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v 299 (496)
+.++... ..+.+.+-+.++....++ +...++.++|++++||+.|+++|++.+.++ ++++ +.+|++
T Consensus 154 ii~~~~~---~~~l~p~~~~~~L~~~~~-------~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~---~~~~--~~~k~i 218 (403)
T PRK15132 154 IIFLVVM---LALMMPHIHKVNLLTLPL-------QQGLALSAIPVIFTSFGFHGSVPSIVSYMG---GNIR--KLRWVF 218 (403)
T ss_pred HHHHHHH---HHHHHHhcCHHHHhcCCc-------cccHHHHHHHHHHHHhhCCcccHHHHHHhC---cCHH--HHHHHH
Confidence 3222211 111111101111111110 111378899999999999999999999995 3443 455999
Q ss_pred hhHHHHHHHHHHhhhhhhhhcccCccc-cccccccCCCCCCChhhhhhhccCCCchhHHHHHHHHHHHHHHhhhhccccc
Q 043392 300 KFAYLIIAMCLFPLAIGGYSAYGNLAN-DIYDAYCQMPGNEGMFDALHKYHNHDTSKVLLGLTSLFVVISSLSSFQIFAM 378 (496)
Q Consensus 300 ~~s~~i~~~~Y~~~g~~GY~~fG~~~~-~~~~~i~~~~~~~~il~~~~~~~g~~~~~~l~~ia~~~~~~~~l~sypl~~~ 378 (496)
..+..+..++|+..=......-+.+.- +......++ +++++.+... ....++..++.++..+++.+||-=...
T Consensus 219 ~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~---~~~l~~l~~~---~~~~~~~~~~~~fa~~Ai~TSFlGv~l 292 (403)
T PRK15132 219 IIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGL---NGLLQALREV---VASPHVELAVHLFADLALATSFLGVAL 292 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCch---HHHHHHHHHH---ccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998754444433333110 000000011 1344544321 233466667888888999999988888
Q ss_pred hhHHHHHHhhhccCCCCCcchhHHHHHHHHHHHHHHHHHhCcC-hHHHHHHHhhhHhhhhhhHhHHHHHHHhCCC-Ccch
Q 043392 379 PVFDNLEFKYTSKYNKPCPWWLRSGIRVFFGSVEFFISAALPF-LRNLAALIGGIALPITLAYPCFMWIHIRKPT-TYSA 456 (496)
Q Consensus 379 p~~~~~e~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~iP~-~~~v~~lvGa~~~~l~filP~ll~lk~~~~~-~~~~ 456 (496)
.++|.+.+.+..++++ ..|.....+..+.++++|...|+ |...+++.|.....+.+++|+++-+|.||++ ..++
T Consensus 293 gl~d~l~d~~~~~~~~----~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~~~ail~~ilP~~m~~~~r~~~~~~~y 368 (403)
T PRK15132 293 GLFDYLADLFQRRNTV----GGRLQTGLITFLPPLAFALFYPRGFVMALGYAGVALAVLALLLPSLLVWQSRKQNPQAGY 368 (403)
T ss_pred HHHHHHHHHHccCccc----cCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Confidence 8999999988653322 23555556677888999999998 8889999887644999999999999998754 2222
Q ss_pred ----hHHHHHHHHHHHHHHHHH
Q 043392 457 ----IWGLNWALGILGMVLSIL 474 (496)
Q Consensus 457 ----~~~~~~~l~~~g~~~~v~ 474 (496)
.+..++.++++|++..+.
T Consensus 369 ~v~gg~~~~~~v~~~G~~~i~~ 390 (403)
T PRK15132 369 RVKGGRPALALVFLCGIAVIGI 390 (403)
T ss_pred cCCCChHHHHHHHHHHHHHHHH
Confidence 234455666666655443
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.85 E-value=5.8e-20 Score=189.69 Aligned_cols=340 Identities=14% Similarity=0.109 Sum_probs=224.2
Q ss_pred HHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh---------
Q 043392 83 SAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG--------- 153 (496)
Q Consensus 83 a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG--------- 153 (496)
+++..++++||+|++++|.++++.|+..+.+++++.++.+.++..++.|+..+.+ +..+|.+.++++||
T Consensus 2 ~~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p--~~~~~~~~~~~~~G~~~g~~~~~ 79 (381)
T TIGR00837 2 GALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYP--GGASFNTIAKDLLGKTGNIIAGL 79 (381)
T ss_pred ceEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCHHHHHHHHhCHHHHHHHHH
Confidence 3455678999999999999999999999999999999999999999999976443 24689999999999
Q ss_pred -------hHHHHHHHHHhhHHHHHHHHhhcCCCcccccccccchhhhhhHHHHHHhhcCCCCchhhHHHHHHHHHHHHHH
Q 043392 154 -------GTCVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQLPNLNSIAGVSLIGAITAVSYC 226 (496)
Q Consensus 154 -------G~~i~y~i~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~~l~~l~~L~~~S~~~~~~~~~~~ 226 (496)
..+.+|.+..++.+..+++.... .......+.+++.+++.++ ..+..+...+++.+..+..+..+
T Consensus 80 ~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~v~~~l-~~~G~~~~~~v~~i~~~~~l~~l 151 (381)
T TIGR00837 80 SLLFVLYILTYAYISGGGSILSRLIGEYFG-------FPWSARAIVLIFTVLFGSF-VWLSTSAVDRITRVLIFGKIIAF 151 (381)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHhcC-------CCccHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHHHHHHH
Confidence 44556777778888777653222 1111222333333333333 34455666666666555444433
Q ss_pred HhhheeeeeccCCCCcccCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcchhhhhHHHHH
Q 043392 227 TIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVKFAYLII 306 (496)
Q Consensus 227 ~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v~~s~~i~ 306 (496)
..+++....+.+.+ ++.|.. . ....+.++..++++..++|++|.+++++.+++ +++ ++++.|++..+..++
T Consensus 152 ~~~ii~~~~~~~~~--~~~~~~-~-~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~----~~~-~k~i~raii~g~~i~ 222 (381)
T TIGR00837 152 ALVFSGLLPHVKGD--LLLDVA-L-DTSYWPYILSALPVCLTSFGFHGNVPSLYKYY----DGN-VKKVKKSILIGSAIA 222 (381)
T ss_pred HHHHHHHHhhccHH--HHhcCc-c-ccccHHHHHHHHHHHHHHHHcccccHHHHHHh----ccC-HHHHHHHHHHHHHHH
Confidence 33333333221111 111110 0 11244577889999999999999999999999 434 445669999999999
Q ss_pred HHHHHhhhhhhhhcccCccccccccccCCCCCCChhhhhhhccCCCchhHHHHHHHHHHHHHHhhhhccccchhHHHHHH
Q 043392 307 AMCLFPLAIGGYSAYGNLANDIYDAYCQMPGNEGMFDALHKYHNHDTSKVLLGLTSLFVVISSLSSFQIFAMPVFDNLEF 386 (496)
Q Consensus 307 ~~~Y~~~g~~GY~~fG~~~~~~~~~i~~~~~~~~il~~~~~~~g~~~~~~l~~ia~~~~~~~~l~sypl~~~p~~~~~e~ 386 (496)
.++|+.+........+.+. .....-.-+..+..+...... ....+...+..++..+++++|+.-.....+|.+.+
T Consensus 223 ~~lY~l~~~~~~g~~~~~~--l~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~ 297 (381)
T TIGR00837 223 LVLYILWQLATMGNLPRSE--FLPIIAKGGNLDGLVNALQGV---LKSSAIELALELFSNFALASSFLGVTLGLFDYLAD 297 (381)
T ss_pred HHHHHHHHHHHhCCCCHHH--HHHHHHcCCChHHHHHHHHHh---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988766655554421 110000000000112222110 11234455677888889999998888888999888
Q ss_pred hhhccCCCCCcchhHHHHHHHHHHHHHHHHHhCcChH-HHHHHHhhhHh-hhhhhHhHHHHHHHhCC
Q 043392 387 KYTSKYNKPCPWWLRSGIRVFFGSVEFFISAALPFLR-NLAALIGGIAL-PITLAYPCFMWIHIRKP 451 (496)
Q Consensus 387 ~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~iP~~~-~v~~lvGa~~~-~l~filP~ll~lk~~~~ 451 (496)
.+...+++ .+|.....+..+...++|.+.|+.. ..++..| +.. .+.+++|+++++|.||+
T Consensus 298 ~~~~~~~~----~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 298 LFKFDDSK----KGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred HhCCCccc----CCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 87653322 2244455666688888999999865 8999999 667 99999999999998875
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.75 E-value=3.8e-16 Score=159.86 Aligned_cols=376 Identities=13% Similarity=0.088 Sum_probs=227.7
Q ss_pred HHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh--------
Q 043392 82 YSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG-------- 153 (496)
Q Consensus 82 ~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG-------- 153 (496)
.-.+.+..+.||+|+|+||......|.++.++++++++.+++|+...|.|..... .++..+|.+++++.||
T Consensus 23 ~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~-~~~~~~i~~v~~~~lG~~g~~i~~ 101 (443)
T PRK13629 23 TWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSG-SNPSGNITETVEEHFGKTGGVVIT 101 (443)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCCCCHHHHHHHHcChhHHHHHH
Confidence 3458899999999999999999999999999999999999999999999975432 1345799999999999
Q ss_pred --------hHHHHHHHHHhhHHHHHHHHhhcCCCcccccccccchhhhhhHHHHHHhhcC--CCCchhhHHHHHHHHHHH
Q 043392 154 --------GTCVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQL--PNLNSIAGVSLIGAITAV 223 (496)
Q Consensus 154 --------G~~i~y~i~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~~l--~~l~~L~~~S~~~~~~~~ 223 (496)
..+.+|.....+.+.+++....+ ..+.++....+++.+++...... |-+.++..+-....+.++
T Consensus 102 ilYff~ly~ll~aY~~~itn~l~sfl~~ql~------~~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l 175 (443)
T PRK13629 102 FLYFFAICPLLWIYGVTITNTFMTFWENQLG------FAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASL 175 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------cCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44566765555555554332111 01222233333333333222222 234444444444433333
Q ss_pred HHHHhhheeeeeccCCCCcccCcc---ccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCC-CC--CCc--ccCc
Q 043392 224 SYCTIIWVVSVIKDRPVGVSYEPV---KEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPST-AK--KPS--RIPM 295 (496)
Q Consensus 224 ~~~~ii~~~~i~~g~~~~~~~~~~---~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~-~k--~P~--~~~m 295 (496)
+...+...-.+. .++....++ ...........+..++|+++|||+.|++++++...+|+. .| +++ .++.
T Consensus 176 ~~l~~~LiP~w~---~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~ 252 (443)
T PRK13629 176 VLISLSLIPYWN---SAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKC 252 (443)
T ss_pred HHHHHHHHHHcC---HHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHH
Confidence 222222111111 111111110 000000112346789999999999999999998885432 11 223 4566
Q ss_pred chhhhhHHHHHHHHHHhhhhhhhhcccCccc-cccccccCCCCCCChhhhhhhccCCC-ch-----hHHHHHHHHHHHHH
Q 043392 296 WRGVKFAYLIIAMCLFPLAIGGYSAYGNLAN-DIYDAYCQMPGNEGMFDALHKYHNHD-TS-----KVLLGLTSLFVVIS 368 (496)
Q Consensus 296 ~~~v~~s~~i~~~~Y~~~g~~GY~~fG~~~~-~~~~~i~~~~~~~~il~~~~~~~g~~-~~-----~~l~~ia~~~~~~~ 368 (496)
+|++..+..+..++|+..-+..-..-+++.- +.+ .|+.+++..+.+..+.. .. .++..++.++..++
T Consensus 253 ~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~------~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~A 326 (443)
T PRK13629 253 SQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAK------AQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVA 326 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH------HhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHH
Confidence 7888999999999998776666555554211 111 11234344333211111 11 34555677777788
Q ss_pred HhhhhccccchhHHHHHHhhhc---c-CCCCC-cchhHHHHHHHHHHHHHHHHHhCcChHHHHHHHhhhHh-hhhhhHhH
Q 043392 369 SLSSFQIFAMPVFDNLEFKYTS---K-YNKPC-PWWLRSGIRVFFGSVEFFISAALPFLRNLAALIGGIAL-PITLAYPC 442 (496)
Q Consensus 369 ~l~sypl~~~p~~~~~e~~~~~---~-~~~~~-~~~~r~~~r~~~~~~~~~iA~~iP~~~~v~~lvGa~~~-~l~filP~ 442 (496)
+.+||-=....++|.++.+..+ + ++++. .+..+.+...+.++.++.+|..-|++-.++.-+|+-.. .+.|++|.
T Consensus 327 I~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~ 406 (443)
T PRK13629 327 IFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPM 406 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999977778889998877631 1 11111 23445566667778899999999998888886666655 88999999
Q ss_pred HHHHHHhCCCCcchhHHHHHHHHHHHHHHHHH
Q 043392 443 FMWIHIRKPTTYSAIWGLNWALGILGMVLSIL 474 (496)
Q Consensus 443 ll~lk~~~~~~~~~~~~~~~~l~~~g~~~~v~ 474 (496)
..-+|.-.-++++- +..|+.+.+.|++....
T Consensus 407 y~i~kvp~l~~yr~-~~~n~fv~~~Gl~~i~~ 437 (443)
T PRK13629 407 YAIRKAPSLAKYRG-RLDNVFVTVIGLLTILN 437 (443)
T ss_pred HHHHccHHHHHhCC-CchhHHHHHHHHHHHHH
Confidence 87766532222221 22467777777665443
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.70 E-value=1e-15 Score=157.54 Aligned_cols=367 Identities=11% Similarity=0.068 Sum_probs=216.7
Q ss_pred hHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh-------
Q 043392 81 YYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG------- 153 (496)
Q Consensus 81 ~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG------- 153 (496)
..-.+.+..+++|+|+|++|...++.||+..++..++...+.+++..++.|..... ..+..++.|++++.||
T Consensus 6 ~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~-~~p~~~i~~~~~~~fGk~~G~ii 84 (397)
T TIGR00814 6 TGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSS-KNPCEDITEVVEEHFGKNWGILI 84 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHHHHcCHHHHHHH
Confidence 45578899999999999999999999999888888888888888888888874321 1125799999999999
Q ss_pred ---------hHHHHHHHHHhhHHHHHHHHhhcCCCcccccccccchhhhhhHHHHHHhhcCCCCchhhHHHHHHHHHHHH
Q 043392 154 ---------GTCVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQLPNLNSIAGVSLIGAITAVS 224 (496)
Q Consensus 154 ---------G~~i~y~i~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~~l~~l~~L~~~S~~~~~~~~~ 224 (496)
..+.+|....++.+..+...... .+...+.+..+..+.++........+.+.+++.+-....+.
T Consensus 85 ~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~-------~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii 157 (397)
T TIGR00814 85 TLLYFFAIYPILLIYSVAITNDSASFLVNQLG-------TAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVL 157 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence 33445555556666655443221 01111222211111111222223344444444333222222
Q ss_pred HHHhhheeeeeccCCCCcccCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCc--ccCcchhhhhH
Q 043392 225 YCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPS--RIPMWRGVKFA 302 (496)
Q Consensus 225 ~~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~--~~~m~~~v~~s 302 (496)
.......+.+.+-+.++....|. ....+.++..++++.+|||.+|.++++.....|+..++|+ .++.+|++..+
T Consensus 158 ~l~~l~~~lip~~~~~~L~~~p~----~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~ 233 (397)
T TIGR00814 158 ILVLLSLYLIPHWNGANLTTFPS----FNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGA 233 (397)
T ss_pred HHHHHHHHHHHHcCHHHHhcCCc----ccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 22222222222211111111111 1123467889999999999999999999744321112233 45556888889
Q ss_pred HHHHHHHHHhhhhhhhhcccCccc-cccccccCCCCCCChhhhhhhccCCCchhHHHHHHHHHHHHHHhhhhccccchhH
Q 043392 303 YLIIAMCLFPLAIGGYSAYGNLAN-DIYDAYCQMPGNEGMFDALHKYHNHDTSKVLLGLTSLFVVISSLSSFQIFAMPVF 381 (496)
Q Consensus 303 ~~i~~~~Y~~~g~~GY~~fG~~~~-~~~~~i~~~~~~~~il~~~~~~~g~~~~~~l~~ia~~~~~~~~l~sypl~~~p~~ 381 (496)
..+..++|+..-+...+..+.+.- +.+.+ ++ +.+..+.+. ....++..+..++..+++.+||--....++
T Consensus 234 ~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~--ni----s~Ls~l~~~---~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~ 304 (397)
T TIGR00814 234 SLILVATVMFFVFSCVLSLSPAEAVAAKEQ--NI----SILSYLANH---FNAAWISYAGPIVAIVAISKSFFGHYLGAR 304 (397)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHc--Cc----HHHHHHHhh---cCCcHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999888876666666665211 11111 11 223333211 122244456667777888999988888899
Q ss_pred HHHHHhhh-ccC--CCCC-cchhHHHHHHHHHHHHHHHHHhCcChHHHHHHHhhhHh-hhhhhHhHHHHHHHhCCCCcch
Q 043392 382 DNLEFKYT-SKY--NKPC-PWWLRSGIRVFFGSVEFFISAALPFLRNLAALIGGIAL-PITLAYPCFMWIHIRKPTTYSA 456 (496)
Q Consensus 382 ~~~e~~~~-~~~--~~~~-~~~~r~~~r~~~~~~~~~iA~~iP~~~~v~~lvGa~~~-~l~filP~ll~lk~~~~~~~~~ 456 (496)
|.+++.+. .++ +++. ++..+.....+.++.++.+|..-|++-.++.-+|+-.. .+.|++|...-+|.-.-++++-
T Consensus 305 e~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~~~~~ 384 (397)
T TIGR00814 305 EGLNGIVLNSLKMKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALKKYRG 384 (397)
T ss_pred HHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHHHhCC
Confidence 99988872 111 1111 23344455566778889999999998888885555555 8889999977766532222222
Q ss_pred hHHHHHHHHHHHH
Q 043392 457 IWGLNWALGILGM 469 (496)
Q Consensus 457 ~~~~~~~l~~~g~ 469 (496)
+ ..|+.+.+.|+
T Consensus 385 ~-~~~~fv~~~g~ 396 (397)
T TIGR00814 385 R-ISNVFVTVIGL 396 (397)
T ss_pred C-cchheeEeeec
Confidence 1 23555555543
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.08 E-value=2.4e-07 Score=97.56 Aligned_cols=230 Identities=11% Similarity=-0.006 Sum_probs=121.8
Q ss_pred cCCCchhHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh-
Q 043392 75 SRNGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG- 153 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG- 153 (496)
+|+-+.++++...++++||+|++.+|..+++.|- .+++..++.+++.........|...+.+. .-....-+++.+|
T Consensus 5 ~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~--~GG~y~y~~~~~G~ 81 (438)
T PRK10655 5 SNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRK--SGGMGGYAEYAFGK 81 (438)
T ss_pred cCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCC--CCchHHHHHHHcCc
Confidence 4577889999999999999999999999988887 46777777777777777777776432221 1223444567788
Q ss_pred --hHHHHHHHHHhhHHHH------HHHHhhcCCCcccccccccc-hhhhhhHHHH-HHhhcCCCCchhhHHHHHHHHHHH
Q 043392 154 --GTCVILVMIGGGTLKT------FFEIVCGASETCNVTRLTTV-EWYLVFICAA-VVLAQLPNLNSIAGVSLIGAITAV 223 (496)
Q Consensus 154 --G~~i~y~i~~g~~l~~------~~~~~~~~~~~~~~~~l~~~-~~~ii~~~~~-~pl~~l~~l~~L~~~S~~~~~~~~ 223 (496)
|...++....+..+.. .........+ ...+.. .+.+...++. +-..-.+..+....+..+..+..+
T Consensus 82 ~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~----~~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l 157 (438)
T PRK10655 82 SGNFMANYTYGVSLLIANVAIAISAVGYGTELFG----ATLSPVQICLATIGVLWLCTVANFGGARITGQISSVTVWGVI 157 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 5555443222211110 0011100000 011111 1211111111 111112222333333222222111
Q ss_pred HHHHhhheeeeeccCCCCcccCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcchhhhhHH
Q 043392 224 SYCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVKFAY 303 (496)
Q Consensus 224 ~~~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v~~s~ 303 (496)
...+++.+........++.+ .++. ......+.++..++....|+|.|-.....+-+|+ |+|+| ++-|++..+.
T Consensus 158 ~~l~~~~i~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r-~iPrAi~~~~ 230 (438)
T PRK10655 158 IPVVGLSIIGWFWFSPSLYV-AAWN-PHHLPFFSAVGSSIAMTLWAFLGLESACANSDAV----ENPER-NVPIAVLGGT 230 (438)
T ss_pred HHHHHHHHHHHHHhCccccc-CCcC-ccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHh----hCccc-cccHHHHHHH
Confidence 11111111111111111111 0010 1111224567778888999999999999999999 67764 3449999999
Q ss_pred HHHHHHHHhhhhhhh
Q 043392 304 LIIAMCLFPLAIGGY 318 (496)
Q Consensus 304 ~i~~~~Y~~~g~~GY 318 (496)
.++.++|.+......
T Consensus 231 ~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 231 LGAAVIYIVSTNVIA 245 (438)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988765443
No 17
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.01 E-value=8.4e-08 Score=98.31 Aligned_cols=226 Identities=15% Similarity=0.161 Sum_probs=129.9
Q ss_pred CCchhHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh---
Q 043392 77 NGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG--- 153 (496)
Q Consensus 77 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG--- 153 (496)
|-|.++..+.++.+++|+|++.+|...++.+---+.+..++.++......+++.+...+.++ .+..+..++++|
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~---~~~~~~~~~~~Gk~~ 78 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE---KNFSEILSKYLGKIL 78 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHhhHHH
Confidence 45678999999999999999999998766444445566777788888888888887665444 368889999999
Q ss_pred hHHHH-----HHHHHh-hHHHHHHHHhhcCCCcccccccccchhhhhh-HHHHHHhhcCCCCchhhHHHHHHHHHHHHH-
Q 043392 154 GTCVI-----LVMIGG-GTLKTFFEIVCGASETCNVTRLTTVEWYLVF-ICAAVVLAQLPNLNSIAGVSLIGAITAVSY- 225 (496)
Q Consensus 154 G~~i~-----y~i~~g-~~l~~~~~~~~~~~~~~~~~~l~~~~~~ii~-~~~~~pl~~l~~l~~L~~~S~~~~~~~~~~- 225 (496)
|..+. |....+ ..++...+..... .-+- ...|.+.. .++..-....+.++.+..++.+-....+..
T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~-tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~~ 152 (359)
T TIGR00912 79 GRLLSILFILYFFLIAAYLIRIFADFIKTY-----LLPR-TPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLILF 152 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCC-CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 33332 222222 2222221111000 0000 12232222 222222233456666666665544433332
Q ss_pred HHhhheeeeeccCCCCcccCccccccchhhHHHHHHHH-HHHHHhhccccchHhHhhcCCCCCCCCcccCcchhhhhHHH
Q 043392 226 CTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSL-GIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVKFAYL 304 (496)
Q Consensus 226 ~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~a~-gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v~~s~~ 304 (496)
..++......+.+. .+..|..+ ..+.++..+. ....++|.+...+.-+..++ |+|++ ..|+...+..
T Consensus 153 ~~il~~~~~~~~~~--~~l~P~~~----~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~----~~~~~--~~k~~~~~~~ 220 (359)
T TIGR00912 153 ILVLILLAPKLGNI--KNLLPVLE----NGLSPILKGAYPVVTFAFGEIEIFFLLFPLL----SKKKK--IKKSIIKAII 220 (359)
T ss_pred HHHHHHHhcccccH--HHccCccc----cCcHHHHhhhhHHhhhhhHHHHHHHHHHHHh----CChhh--hHHHHHHHHH
Confidence 12222222221111 11222211 1233444444 36788998888877788888 55554 4488889999
Q ss_pred HHHHHHHhhhhhhhhcccC
Q 043392 305 IIAMCLFPLAIGGYSAYGN 323 (496)
Q Consensus 305 i~~~~Y~~~g~~GY~~fG~ 323 (496)
++.++|..+-+.....+|.
T Consensus 221 ~~~~ly~~~~~~~i~~lg~ 239 (359)
T TIGR00912 221 IGVLLYILTTFVSISVFGG 239 (359)
T ss_pred HHHHHHHHHHHHHHheecH
Confidence 9999999887777777776
No 18
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.01 E-value=3.4e-07 Score=96.38 Aligned_cols=226 Identities=12% Similarity=0.115 Sum_probs=119.6
Q ss_pred ccCCCchhHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh
Q 043392 74 ESRNGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 74 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG 153 (496)
++|+-+.++.+...++++||+|++.+|...++.|-. .++..++.++..........|...+.+.. -...+-+++ +|
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~--GG~y~y~~~-~g 78 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQ--GGPIAYAGE-IS 78 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCC--CChhHHHHH-HC
Confidence 456788899999999999999999999999998864 55555666666666666666664433321 122223344 45
Q ss_pred ---hHHHHHHHH-------------HhhHHHHHHHHhhcCCCcccccccccchhhhhhHHHHHHhhcCCCCchhhHHHHH
Q 043392 154 ---GTCVILVMI-------------GGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQLPNLNSIAGVSLI 217 (496)
Q Consensus 154 ---G~~i~y~i~-------------~g~~l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~~l~~l~~L~~~S~~ 217 (496)
|..+++... .++.+..++ +.. ..+.....+.+++.. .+-+.-.+..+..+.+..+
T Consensus 79 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~-------p~~-~~~~~~~~~~~~i~~-~~~~ln~~gvk~~~~i~~i 149 (435)
T PRK10435 79 PAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFF-------PVL-NDPIPAGIACIAIVW-VFTFVNMLGGTWVSRLTTI 149 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------ccc-CChHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHH
Confidence 333332211 112221111 100 011100111111111 1111122233333333333
Q ss_pred HHHHHHHHHHhhheeeeeccCCCC--cccCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCc
Q 043392 218 GAITAVSYCTIIWVVSVIKDRPVG--VSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPM 295 (496)
Q Consensus 218 ~~~~~~~~~~ii~~~~i~~g~~~~--~~~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m 295 (496)
..+..+..+...+.......+.++ .++.+ .......++..++....|+|.|-..+....+|+ |+|+| ++
T Consensus 150 ~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~----~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~----knP~r-~i 220 (435)
T PRK10435 150 GLVLVLIPVVGTAIVGWHWFDAATYAANWNT----SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMV----KNPKR-TV 220 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHhhcccccC----CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHh----hCccc-cc
Confidence 222222111111111111111111 11111 112345688889999999999999999999999 67753 23
Q ss_pred chhhhhHHHHHHHHHHhhhhhhhhcc
Q 043392 296 WRGVKFAYLIIAMCLFPLAIGGYSAY 321 (496)
Q Consensus 296 ~~~v~~s~~i~~~~Y~~~g~~GY~~f 321 (496)
-|++..+..++.++|....+.-....
T Consensus 221 PrAi~~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 221 PLATMLGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 38999999999999998776554333
No 19
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.00 E-value=6.4e-07 Score=95.18 Aligned_cols=237 Identities=11% Similarity=0.018 Sum_probs=119.6
Q ss_pred CCCchhHHHHHHHhhhhhhhhchHHHHHH-hcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh-
Q 043392 76 RNGNAYYSAFHTLSSGIGVQALVLPLAFT-TLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG- 153 (496)
Q Consensus 76 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG- 153 (496)
|+-+.++.+...++++||+|++.+|.... ..|....++..++.++..........|...+.++.. -...+-+++.||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~g-GG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELD-GGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-CChhhhHHhHcCc
Confidence 35678899999999999999999998754 455333344456666666666777777654333210 023344778888
Q ss_pred --hHHHHHHHHHhhHH---------HHHHHHhhcCCCcccccccccchhhhhhHHH-HHHhhcCCCCchhhHHHHHHHHH
Q 043392 154 --GTCVILVMIGGGTL---------KTFFEIVCGASETCNVTRLTTVEWYLVFICA-AVVLAQLPNLNSIAGVSLIGAIT 221 (496)
Q Consensus 154 --G~~i~y~i~~g~~l---------~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~-~~pl~~l~~l~~L~~~S~~~~~~ 221 (496)
|..+++....+... ......+.+ . .....+...+.+...++ .+-..-.+..+..+.+..+..+.
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p--~--~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ 155 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFP--I--FGGGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIA 155 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--c--ccCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 55555443222111 011111111 0 00010111122111111 11111123444444444333222
Q ss_pred HHHHHHhhhe--eeeeccCCCCcc-cCccc-cccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcch
Q 043392 222 AVSYCTIIWV--VSVIKDRPVGVS-YEPVK-EISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWR 297 (496)
Q Consensus 222 ~~~~~~ii~~--~~i~~g~~~~~~-~~~~~-~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~ 297 (496)
-+...+++++ ....++.....+ ++... .......+.++..++....|+|.|-.....+.+|. |++ +++.|
T Consensus 156 ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~----k~~--k~ip~ 229 (468)
T TIGR03810 156 KLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARA----EKR--SDVGK 229 (468)
T ss_pred HHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhc----cCc--ccchH
Confidence 2211111111 111111110001 00000 00011223456678889999999998888888888 443 34458
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhcccC
Q 043392 298 GVKFAYLIIAMCLFPLAIGGYSAYGN 323 (496)
Q Consensus 298 ~v~~s~~i~~~~Y~~~g~~GY~~fG~ 323 (496)
++..+..++.++|..+.+..+...++
T Consensus 230 ai~~~~~~v~~lY~l~~~~~~g~~~~ 255 (468)
T TIGR03810 230 ATVIGLIGVLAIYVLVSVLSYGIMTQ 255 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcCH
Confidence 99999999999999887766555443
No 20
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=98.98 E-value=1e-06 Score=93.84 Aligned_cols=231 Identities=13% Similarity=0.066 Sum_probs=118.1
Q ss_pred cCCCchhHHHHHHHhhhhhhhhchHHHHHHhcChh-HHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh
Q 043392 75 SRNGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWT-WGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~-~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG 153 (496)
+|+-+.+++++..+++++|+|++.+|....+.|-. ..++..++.++..........|...+.+++ .-...+.+++.||
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~-sGG~y~y~~~~~G 84 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPEL-DGGIYAYAREGFG 84 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CCChhhhHHhHcc
Confidence 45678999999999999999999999997765522 223445555665655666666664332220 1123334577888
Q ss_pred ---hHHHHHHHH-------------HhhHHHHHHHHhhcCCCcccccccccchhhhhhHHH-HHHhhcCCCCchhhHHHH
Q 043392 154 ---GTCVILVMI-------------GGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICA-AVVLAQLPNLNSIAGVSL 216 (496)
Q Consensus 154 ---G~~i~y~i~-------------~g~~l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~-~~pl~~l~~l~~L~~~S~ 216 (496)
|...++... ..+.+..+++.. . .......+.....++ .+-..-.+..+..+.+..
T Consensus 85 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~-~-------~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~ 156 (473)
T TIGR00905 85 PYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLF-G-------SGNPVPSILGASVLLWVFTFLVLRGVRQAAFINT 156 (473)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-c-------CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 444333221 112222222110 0 000011111111111 111122334444444444
Q ss_pred HHHHHHHHHHHhhheeee--eccCCCCcccCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccC
Q 043392 217 IGAITAVSYCTIIWVVSV--IKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIP 294 (496)
Q Consensus 217 ~~~~~~~~~~~ii~~~~i--~~g~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~ 294 (496)
+..+..+...+++++..+ .++.....++.+.........+..+..++....|+|.|-.....+.+|+| +++ +
T Consensus 157 ~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k----~~r--~ 230 (473)
T TIGR00905 157 ITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAK----NKS--D 230 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHh----ccc--c
Confidence 333222221111111111 11110001111100000112345677888999999999999999999994 433 3
Q ss_pred cchhhhhHHHHHHHHHHhhhhhhhhc
Q 043392 295 MWRGVKFAYLIIAMCLFPLAIGGYSA 320 (496)
Q Consensus 295 m~~~v~~s~~i~~~~Y~~~g~~GY~~ 320 (496)
.-|++..+..++.++|..........
T Consensus 231 iPrai~~~~~i~~~~Yil~~~~~~~~ 256 (473)
T TIGR00905 231 VGKATVLGTLGALVIYILITLLSLGV 256 (473)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44999999999999998876654333
No 21
>TIGR00909 2A0306 amino acid transporter.
Probab=98.98 E-value=4.3e-07 Score=95.36 Aligned_cols=230 Identities=14% Similarity=0.113 Sum_probs=123.0
Q ss_pred cCCCchhHHHHHHHhhhhhhhhchHHHHHH-hcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh
Q 043392 75 SRNGNAYYSAFHTLSSGIGVQALVLPLAFT-TLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG 153 (496)
+|+-+.++.++..+++++|+|++.+|.... ..|. ..++..++.++........+.|...+.++. -...+-.++.+|
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~--Gg~y~~~~~~~G 78 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVA--GSPYTYAYEAMG 78 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CcceeeHHHHhC
Confidence 356788999999999999999999996644 4444 345556666777777777777765433221 122233446677
Q ss_pred ---hHHHHH-------------HHHHhhHHHHHHHHhhcCCCc-ccccccccchh--hhhhHHHHHHhhcCCCCchhhHH
Q 043392 154 ---GTCVIL-------------VMIGGGTLKTFFEIVCGASET-CNVTRLTTVEW--YLVFICAAVVLAQLPNLNSIAGV 214 (496)
Q Consensus 154 ---G~~i~y-------------~i~~g~~l~~~~~~~~~~~~~-~~~~~l~~~~~--~ii~~~~~~pl~~l~~l~~L~~~ 214 (496)
|...++ ....++.++.++.....+.+. +.........+ ..+...+++-....+..+...++
T Consensus 79 ~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~ 158 (429)
T TIGR00909 79 ELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKV 158 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 333222 222233333333211000000 00000000111 11111111112223445555555
Q ss_pred HHHHHHHHHHHHHhhheeeeeccCCCCcccCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccC
Q 043392 215 SLIGAITAVSYCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIP 294 (496)
Q Consensus 215 S~~~~~~~~~~~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~ 294 (496)
+.+.....+...++++.....+...+ ++.+.. .....++..++...+|+|.|........+|+ |+|+| +
T Consensus 159 ~~v~~~~~i~~l~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~----~~p~r-~ 227 (429)
T TIGR00909 159 NDILVVLKVAALLLFAALGAIHFASN--NYTPFM----PMGFGGVGAATALVFFAFIGFEAISTAAEEV----KNPER-D 227 (429)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhCcHH--hcCCCC----CCcHHHHHHHHHHHHHHHhhHHHHHhhHHhc----cCccc-c
Confidence 55544433333222222222221111 222111 1234577888999999999999999999999 67753 3
Q ss_pred cchhhhhHHHHHHHHHHhhhhhhh
Q 043392 295 MWRGVKFAYLIIAMCLFPLAIGGY 318 (496)
Q Consensus 295 m~~~v~~s~~i~~~~Y~~~g~~GY 318 (496)
..|++..+..++.++|........
T Consensus 228 ip~ai~~~~~~~~v~Yil~~~~~~ 251 (429)
T TIGR00909 228 IPKAIILSLIVVTLLYVLVAAVIL 251 (429)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 448999999999999998865544
No 22
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=98.96 E-value=1.2e-06 Score=92.58 Aligned_cols=226 Identities=14% Similarity=0.120 Sum_probs=115.5
Q ss_pred cCCCchhHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh-
Q 043392 75 SRNGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG- 153 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG- 153 (496)
+|+-+.++++...++++||+|++.+|...++.|.. .+...++.++...-....+.|...+.+.. -....-+++.+|
T Consensus 7 ~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~~al~~aEL~s~~P~a--GG~y~~~~~~~g~ 83 (445)
T PRK10644 7 AHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSSLDPSP--GGSYAYARRCFGP 83 (445)
T ss_pred CCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCC--CChhHHHHHHcCc
Confidence 46778899999999999999999999998887753 34444555555555556666664332221 122222667787
Q ss_pred --hHHHHHHHHHh----hHH-H----HHHHHhhcCCCcccccccccchhhhhhHHHHHHhh--cCCCCchhhHHHHHHHH
Q 043392 154 --GTCVILVMIGG----GTL-K----TFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLA--QLPNLNSIAGVSLIGAI 220 (496)
Q Consensus 154 --G~~i~y~i~~g----~~l-~----~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~--~l~~l~~L~~~S~~~~~ 220 (496)
|..+++....+ ... . .....+.+ ...+.....++..++++.+. -.+..+....+..+..+
T Consensus 84 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~ 156 (445)
T PRK10644 84 FLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFP-------ILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATV 156 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 44333322211 100 0 00111111 00001111111111111121 12223333333333222
Q ss_pred HHHHHHHhhheeeeeccCCCCcccCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcchhhh
Q 043392 221 TAVSYCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVK 300 (496)
Q Consensus 221 ~~~~~~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v~ 300 (496)
..+..+.++....+.....++.. ..+ +......+.++..++....|+|.|-......-+|+ |+|+| +.-|++.
T Consensus 157 ~~~i~l~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r-~iPrai~ 229 (445)
T PRK10644 157 LALIPIVGIAVFGWFWFRGETYM-AAW-NVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPIATI 229 (445)
T ss_pred HHHHHHHHHHHHHHHHhCchhcc-CCc-cccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHh----hCccc-chhHHHH
Confidence 22211111111111111111100 001 01111234566778888999999999999999999 67754 3448999
Q ss_pred hHHHHHHHHHHhhhhhh
Q 043392 301 FAYLIIAMCLFPLAIGG 317 (496)
Q Consensus 301 ~s~~i~~~~Y~~~g~~G 317 (496)
.+..++.++|.++.+.-
T Consensus 230 ~s~~i~~v~Y~l~~~~~ 246 (445)
T PRK10644 230 GGVLIAAVCYVLSSTAI 246 (445)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999877653
No 23
>PRK11021 putative transporter; Provisional
Probab=98.94 E-value=3.2e-06 Score=88.29 Aligned_cols=220 Identities=11% Similarity=0.099 Sum_probs=116.5
Q ss_pred chhHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh---hH
Q 043392 79 NAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG---GT 155 (496)
Q Consensus 79 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG---G~ 155 (496)
+.++++...++++||+|++.+|-...+.+--..++..++.++..........|...+.++. -....-+++.|| |.
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~a--GG~y~y~~~~~G~~~gf 79 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHA--GGPAHFVGMAFGPRLGR 79 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHhHHHHhCchhHH
Confidence 4688999999999999999999875544323466666777777777777777775433321 234445667788 44
Q ss_pred HHHHHHHHhhHH------HHHHHHhhcCCCcccccccccchhhhhhHH-HHHHhhcCCCCchhhHHHHHHHHHHHHHHHh
Q 043392 156 CVILVMIGGGTL------KTFFEIVCGASETCNVTRLTTVEWYLVFIC-AAVVLAQLPNLNSIAGVSLIGAITAVSYCTI 228 (496)
Q Consensus 156 ~i~y~i~~g~~l------~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~-~~~pl~~l~~l~~L~~~S~~~~~~~~~~~~i 228 (496)
..++........ ...........+ ... ...+.+...+ ..+-+.-.+..+...++..+-.+..+ .+
T Consensus 80 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~---~i 151 (410)
T PRK11021 80 VTGWLFLSVIPVGLPAALQIAAGFGQALFG---WSS--WQLLLAELLTLALLWLLNLRGASSSANLQTVIALLIV---AL 151 (410)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcC---CCC--chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HH
Confidence 444333221100 000010000000 001 0112111111 11111122333333333332221111 11
Q ss_pred hheeeeeccCCCCcccCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcchhhhhHHHHHHH
Q 043392 229 IWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVKFAYLIIAM 308 (496)
Q Consensus 229 i~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v~~s~~i~~~ 308 (496)
+... +..+.....++. +. .....++.++..++....|+|.|-..+...-+|+ |||+| ++-|++..+..++.+
T Consensus 152 ~~~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~k-~iPrAi~~~~~~~~~ 223 (410)
T PRK11021 152 VVAI-WWAGDIKPADIP-FP-APGSIEWSGLFAALGVMFWCFVGIEAFAHLASEF----KNPER-DFPRALMIGLLLAGL 223 (410)
T ss_pred HHHH-HHHcCCchhcCC-CC-CCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhc----cCccc-cccHHHHHHHHHHHH
Confidence 1111 111111111111 11 1112356678889999999999999999999999 67754 344999999999999
Q ss_pred HHHhhhhh
Q 043392 309 CLFPLAIG 316 (496)
Q Consensus 309 ~Y~~~g~~ 316 (496)
+|.+..+.
T Consensus 224 lYil~~~~ 231 (410)
T PRK11021 224 VYWACTVV 231 (410)
T ss_pred HHHHHHHH
Confidence 99987654
No 24
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=98.92 E-value=3e-06 Score=90.06 Aligned_cols=231 Identities=15% Similarity=0.100 Sum_probs=121.2
Q ss_pred ccCCCchhHHHHHHHhhhhhhhhchHHH-HHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHh
Q 043392 74 ESRNGNAYYSAFHTLSSGIGVQALVLPL-AFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAF 152 (496)
Q Consensus 74 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~f 152 (496)
.+|+-+.++.....++++||+|++..|- +++++|. ..++..++.+++......-+.|.... +.+..++.+.+++.+
T Consensus 18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~--~~~~~~~~~ya~~~~ 94 (469)
T PRK11049 18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLS--NLEYKSFSDFASDLL 94 (469)
T ss_pred hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCcHHHHHHHHh
Confidence 4567788999999999999999999765 7888887 45666667777776666667776432 223345677889999
Q ss_pred h---hHHHHHHHHHhhHH------HHHHHHhhcCCCcccccccccchhhhhhHHHHHHhhcCCCCchhhHHHHHHHHHHH
Q 043392 153 G---GTCVILVMIGGGTL------KTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQLPNLNSIAGVSLIGAITAV 223 (496)
Q Consensus 153 G---G~~i~y~i~~g~~l------~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~~l~~l~~L~~~S~~~~~~~~ 223 (496)
| |..+++....+... ..+........+ ......+.+++..++..+. ....+....+..+..+.-+
T Consensus 95 g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p-----~~~~~~~~~~~~~~~~~iN-~~g~~~~~~i~~~~~~~kl 168 (469)
T PRK11049 95 GPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFP-----DLSDWVASLAVVLLLLSLN-LATVKMFGEMEFWFAMIKI 168 (469)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCcHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHH
Confidence 8 55555544332211 111111100001 1111222222222222221 1222333333222111111
Q ss_pred HHHHhhheee---eecc--CCCC--cccCcccc--ccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccC
Q 043392 224 SYCTIIWVVS---VIKD--RPVG--VSYEPVKE--ISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIP 294 (496)
Q Consensus 224 ~~~~ii~~~~---i~~g--~~~~--~~~~~~~~--~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~ 294 (496)
....++++.+ +..+ ...+ ..+.+..+ ......+.++..++....|+|.|-..+...-+|+ |+|+| +
T Consensus 169 ~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----knP~r-~ 243 (469)
T PRK11049 169 VAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAET----KDPEK-S 243 (469)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHh----cCHhh-H
Confidence 1111111111 1011 0111 11111000 0111234568889999999999999999999999 67764 3
Q ss_pred cchhhhhHHHHHHHHHHhhhhhhh
Q 043392 295 MWRGVKFAYLIIAMCLFPLAIGGY 318 (496)
Q Consensus 295 m~~~v~~s~~i~~~~Y~~~g~~GY 318 (496)
+-|++..+...+.++|......-+
T Consensus 244 iPrai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 244 LPRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHe
Confidence 347776666666777776555443
No 25
>PRK10249 phenylalanine transporter; Provisional
Probab=98.83 E-value=1.2e-05 Score=85.35 Aligned_cols=231 Identities=12% Similarity=0.001 Sum_probs=122.3
Q ss_pred cCCCchhHHHHHHHhhhhhhhhchHHHH-HHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh
Q 043392 75 SRNGNAYYSAFHTLSSGIGVQALVLPLA-FTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG 153 (496)
+|+-+.++..+..++.+||+|++.+|-. .++.|- ..++..++.+++......-+.|...+.+. .-.+.+.+++.+|
T Consensus 20 ~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~--~Gg~~~y~~~~~g 96 (458)
T PRK10249 20 HRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPV--SGSFAHFAYKYWG 96 (458)
T ss_pred hccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHhC
Confidence 3566788999999999999999998865 555565 46677778888888888888887544332 2355667778888
Q ss_pred ---hHHHHHHHHHhhHHHHHHH-----HhhcCCCcccccccccchhhhhhHHHHHHhhc--CCCCchhhHHHHHHHHHHH
Q 043392 154 ---GTCVILVMIGGGTLKTFFE-----IVCGASETCNVTRLTTVEWYLVFICAAVVLAQ--LPNLNSIAGVSLIGAITAV 223 (496)
Q Consensus 154 ---G~~i~y~i~~g~~l~~~~~-----~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~~--l~~l~~L~~~S~~~~~~~~ 223 (496)
|..+++....+.......+ ....... +......+.+++..+...+.. .|...++..+..+.-+..+
T Consensus 97 ~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~l~~~lN~~gv~~~~~i~~~~~~ikv~~i 172 (458)
T PRK10249 97 PFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWF----PDVPTWIWAAAFFIIINAVNLVNVRLYGETEFWFALIKVLAI 172 (458)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CcCcHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHH
Confidence 5555443332221111110 0111000 111111222222221111211 2333333322221111111
Q ss_pred HHHHhhheeeeeccC-CCCcccCc-ccc-ccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcchhhh
Q 043392 224 SYCTIIWVVSVIKDR-PVGVSYEP-VKE-ISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVK 300 (496)
Q Consensus 224 ~~~~ii~~~~i~~g~-~~~~~~~~-~~~-~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v~ 300 (496)
..++++....+..+. .+..+.+. +.+ ......+.++..++....|+|.|-..+...-+|+ |+|++ ++-|++.
T Consensus 173 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----~~P~k-~iPrai~ 247 (458)
T PRK10249 173 IGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEA----RDPEK-SIPKAVN 247 (458)
T ss_pred HHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHh----cCHhh-HHHHHHH
Confidence 111111010011111 11111110 000 0112345678889999999999999999999999 67765 3448888
Q ss_pred hHHHHHHHHHHhhhhhh
Q 043392 301 FAYLIIAMCLFPLAIGG 317 (496)
Q Consensus 301 ~s~~i~~~~Y~~~g~~G 317 (496)
.+...+.++|......-
T Consensus 248 ~~~~~~~~~y~~~~~~~ 264 (458)
T PRK10249 248 QVVYRILLFYIGSLVVL 264 (458)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888887754443
No 26
>PRK15049 L-asparagine permease; Provisional
Probab=98.83 E-value=7.5e-06 Score=87.66 Aligned_cols=235 Identities=10% Similarity=0.077 Sum_probs=120.2
Q ss_pred cCCCchhHHHHHHHhhhhhhhhchHHH-HHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh
Q 043392 75 SRNGNAYYSAFHTLSSGIGVQALVLPL-AFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG 153 (496)
+|+-+.++..+..+..+||+|++..|- ++++.|- .+++..++.+++....+.-+.|.....+. .-....-+++.+|
T Consensus 27 ~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~--aGg~y~y~~~~~G 103 (499)
T PRK15049 27 HKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPS--SGSFVSYAREFLG 103 (499)
T ss_pred hccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHhC
Confidence 355678899999999999999988887 6777775 46677777788877777788887543322 2345556677887
Q ss_pred ---hHHHHHHHHHhhHHHHH-----HHHhhcCCCcccccccccchhhhh--hHHHHHHhhcCCCCchhhHHHHHHH---H
Q 043392 154 ---GTCVILVMIGGGTLKTF-----FEIVCGASETCNVTRLTTVEWYLV--FICAAVVLAQLPNLNSIAGVSLIGA---I 220 (496)
Q Consensus 154 ---G~~i~y~i~~g~~l~~~-----~~~~~~~~~~~~~~~l~~~~~~ii--~~~~~~pl~~l~~l~~L~~~S~~~~---~ 220 (496)
|..+.+....+...... ........+. . .. ...|... +.+++..+. ++..+....+..+.. +
T Consensus 104 ~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~~~-~-~~--~~~~~~~~~~~~l~~~iN-~~gvk~~~~i~~~~~~iki 178 (499)
T PRK15049 104 EKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGA-F-GG--VPQWVFALAALTIVGTMN-MIGVKWFAEMEFWFALIKV 178 (499)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-C-CC--CcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 55555443322111000 0001110000 0 01 1223222 222211111 112222222222111 1
Q ss_pred HHHHHHHhhheeeeeccCCCC---cccCcccc--ccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCc
Q 043392 221 TAVSYCTIIWVVSVIKDRPVG---VSYEPVKE--ISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPM 295 (496)
Q Consensus 221 ~~~~~~~ii~~~~i~~g~~~~---~~~~~~~~--~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m 295 (496)
..+..++++....+..+...+ ..+....+ ......+.+++.++...+|+|.|-..+...-+|+ |+|++ .+
T Consensus 179 ~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~----knP~r-~i 253 (499)
T PRK15049 179 LAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGEC----KDPQT-MV 253 (499)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHh----cChhh-HH
Confidence 111111111111111111110 00100000 0011234455667778999999999999999999 67764 34
Q ss_pred chhhhhHHHHHHHHHHhhhhhhhhccc
Q 043392 296 WRGVKFAYLIIAMCLFPLAIGGYSAYG 322 (496)
Q Consensus 296 ~~~v~~s~~i~~~~Y~~~g~~GY~~fG 322 (496)
-|++..++..+.++|...........+
T Consensus 254 PrAi~~~~~~i~~~yi~~~~~~~~~~p 280 (499)
T PRK15049 254 PKAINSVIWRIGLFYVGSVVLLVMLLP 280 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheecc
Confidence 488887888888888876554433333
No 27
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=98.78 E-value=2.8e-06 Score=88.99 Aligned_cols=225 Identities=15% Similarity=0.180 Sum_probs=117.2
Q ss_pred chhHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHH-HHHHHHHHhccccccCCccCcHHHHHHHHhh---h
Q 043392 79 NAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQ-LYTLWLLIQLHESESGTRYSRYLRLSMAAFG---G 154 (496)
Q Consensus 79 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~-~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG---G 154 (496)
++++++...++.++|+|+...| ...+.|.. .++..++.+++. ........|...+.+ +.-....-+++.+| |
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p--~~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYP--SAGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTT--SSTTHHHHHHHHH-HHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCC--CcCeeeehhhhcccccch
Confidence 4678999999999999999999 77777775 444444444444 455555566533221 12344455667777 3
Q ss_pred H------HHHHHHHHhhHHHHHHHHhhcCCCccccccccc--chhhhh-h-HHHHHHhhcCCCCchhhHHHHHHHHHHH-
Q 043392 155 T------CVILVMIGGGTLKTFFEIVCGASETCNVTRLTT--VEWYLV-F-ICAAVVLAQLPNLNSIAGVSLIGAITAV- 223 (496)
Q Consensus 155 ~------~i~y~i~~g~~l~~~~~~~~~~~~~~~~~~l~~--~~~~ii-~-~~~~~pl~~l~~l~~L~~~S~~~~~~~~- 223 (496)
. ...|............+....... ..+.. ....++ . ..+.+-..-.+..+..+++..+..+..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~ 153 (426)
T PF13520_consen 78 FIVGWLYWVAYILSLASVASSFASYLLSLFG----PDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIV 153 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT----GGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hcccceeEEEeeccccccccchhhhhhhccc----cccccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhhh
Confidence 3 233333332222222222221000 11111 111111 1 1111222233445555555444444333
Q ss_pred HHHHhhheeeeeccCCCCc-----cc-CccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcch
Q 043392 224 SYCTIIWVVSVIKDRPVGV-----SY-EPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWR 297 (496)
Q Consensus 224 ~~~~ii~~~~i~~g~~~~~-----~~-~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~ 297 (496)
....+++...+...+.+.. .. ++.+. .+.+++.++...+|+|.|-.......+|+ |+ + +..|
T Consensus 154 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~G~e~~~~~~~E~----k~-k--~ip~ 221 (426)
T PF13520_consen 154 IPLLVLIILGIVSFSFSGFNSLSFSLSTFFPS-----GWPGFLAGFSVAFFAFSGFEAIASLAEEN----KN-K--TIPR 221 (426)
T ss_dssp HHHHHHHHHHHHSTTCCHHH----SHSCSSCS-----SSSHHHHHHHHHGGGGTTTTHHHHGGGGS----SS-H--HHHH
T ss_pred hhhhhheeEEEeeecccccccccccccccCCc-----cccchhhHHHHHHhhcccccccccccccc----cc-h--hhee
Confidence 1211222222221111111 01 11111 12246788999999999999999999998 44 3 3559
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhcccC
Q 043392 298 GVKFAYLIIAMCLFPLAIGGYSAYGN 323 (496)
Q Consensus 298 ~v~~s~~i~~~~Y~~~g~~GY~~fG~ 323 (496)
++..+..++.++|.+....-....++
T Consensus 222 ai~~~~~~~~i~y~l~~~~~~~~~~~ 247 (426)
T PF13520_consen 222 AIIISIIIVAIIYILFSIALLGALPD 247 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTH
T ss_pred ecccchhHHHHHHhhhhheeeecccc
Confidence 99999999999999987666555555
No 28
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=98.78 E-value=9.6e-06 Score=85.81 Aligned_cols=227 Identities=11% Similarity=0.088 Sum_probs=123.1
Q ss_pred ccCCCchhHHHHHHHhhhhhhhhchHH-HHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHh
Q 043392 74 ESRNGNAYYSAFHTLSSGIGVQALVLP-LAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAF 152 (496)
Q Consensus 74 ~~~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~f 152 (496)
.+|+-+.++..+..++++||+|++.+| .+.++.|-. +++..++.+++.+.....+.|...+.+. .-.+.+.+++.+
T Consensus 10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~~~aEl~s~~P~--~Gg~~~~~~~~~ 86 (452)
T TIGR01773 10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFIMRMLGEMAVANPD--TGSFSTYADDAI 86 (452)
T ss_pred HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHh
Confidence 356778889999999999999999999 778888864 6777778888888888888887543332 234566777888
Q ss_pred h---hHHHHHHHHHhh------HHH---HHHHHhhcCCCcccccccccchhhhhhH--HHHHHhh--cCCCCchhhHHHH
Q 043392 153 G---GTCVILVMIGGG------TLK---TFFEIVCGASETCNVTRLTTVEWYLVFI--CAAVVLA--QLPNLNSIAGVSL 216 (496)
Q Consensus 153 G---G~~i~y~i~~g~------~l~---~~~~~~~~~~~~~~~~~l~~~~~~ii~~--~~~~pl~--~l~~l~~L~~~S~ 216 (496)
| |...++....+. ... ...+...+ .. ..|.+... .+...+. -.|..+.+.....
T Consensus 87 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~--~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~~ 156 (452)
T TIGR01773 87 GRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFP--------DI--PLWLFSLILTIVLTLTNLYSVKSYGEFEFWFA 156 (452)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------cC--cHHHHHHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 8 444443322211 111 11111111 11 12332222 1111111 1233333333222
Q ss_pred HHHHHHHHHHHhhheeeeeccCCC--CcccCcccc--ccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcc
Q 043392 217 IGAITAVSYCTIIWVVSVIKDRPV--GVSYEPVKE--ISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSR 292 (496)
Q Consensus 217 ~~~~~~~~~~~ii~~~~i~~g~~~--~~~~~~~~~--~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~ 292 (496)
+..+..+..++++.......+... ...+.++.+ ....+.+.++..++....|+|.|-.....+.+|+ |+|+|
T Consensus 157 ~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~----k~P~r 232 (452)
T TIGR01773 157 LIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAES----SNPIK 232 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhh----cChhh
Confidence 211111111111111001111110 011111110 0112234568889999999999999999999999 67764
Q ss_pred cCcchhhhhHHHHHHHHHHhhhhhhh
Q 043392 293 IPMWRGVKFAYLIIAMCLFPLAIGGY 318 (496)
Q Consensus 293 ~~m~~~v~~s~~i~~~~Y~~~g~~GY 318 (496)
+.-|++..+.....++|........
T Consensus 233 -~iPrAi~~~~~~~~~~y~l~~~~~~ 257 (452)
T TIGR01773 233 -SITRATNSVIWRIIVFYLGSIFIVV 257 (452)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 3347877777778888887644433
No 29
>PRK10746 putative transport protein YifK; Provisional
Probab=98.75 E-value=2.8e-05 Score=82.43 Aligned_cols=230 Identities=11% Similarity=0.015 Sum_probs=122.1
Q ss_pred cCCCchhHHHHHHHhhhhhhhhchHHHH-HHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh
Q 043392 75 SRNGNAYYSAFHTLSSGIGVQALVLPLA-FTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG 153 (496)
+|+-+.++..+..+..+||+|++..|.. ++.+|- ..++..++.+++.+....-+.|.....+. .-.+.+-+++.+|
T Consensus 9 ~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~--sGg~~~y~~~~~g 85 (461)
T PRK10746 9 QRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPV--TGSFAVYAHRYMS 85 (461)
T ss_pred hccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHhC
Confidence 4567788999999999999999997765 666776 35566677777777778888887543332 2356677888888
Q ss_pred ---hHHHHHHHHHhhH------HHHHHHHhhcCCCcccccccccchhhhhhHHHHHHhh--cCCCCchhhHH-HHHHHHH
Q 043392 154 ---GTCVILVMIGGGT------LKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLA--QLPNLNSIAGV-SLIGAIT 221 (496)
Q Consensus 154 ---G~~i~y~i~~g~~------l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~--~l~~l~~L~~~-S~~~~~~ 221 (496)
|..+++....+.. +..... +..+.. +......|..++.++...+. -.|...++... +.+-++.
T Consensus 86 ~~~Gf~~gw~~~~~~~~~~~~~~~a~~~-~l~~~~----p~~~~~~~~~~~~~~~~~lN~~gv~~~~~~e~~~~~~ki~~ 160 (461)
T PRK10746 86 PFFGYLTAWSYWFMWMAVGISEITAIGV-YVQFWF----PEMAQWIPALIAVALVALANLAAVRLYGEIEFWFAMIKVTT 160 (461)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcc----CCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5555543332211 111111 111000 11112223333222222221 12333333322 2111111
Q ss_pred HHHHHHhhheee-eeccCC-CCcccCcccc--ccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcch
Q 043392 222 AVSYCTIIWVVS-VIKDRP-VGVSYEPVKE--ISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWR 297 (496)
Q Consensus 222 ~~~~~~ii~~~~-i~~g~~-~~~~~~~~~~--~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~ 297 (496)
.+..+++.+... ...+.. +...++.+.+ ......+.++..++....|+|.|-..+...-+|+ |+|+| .+-|
T Consensus 161 i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~----knP~k-~iP~ 235 (461)
T PRK10746 161 IIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEA----KNPQV-TLRS 235 (461)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHh----cChhh-HHHH
Confidence 111111111000 011110 1111111110 1112346678899999999999999999999999 67753 4558
Q ss_pred hhhhHHHHHHHHHHhhhhhh
Q 043392 298 GVKFAYLIIAMCLFPLAIGG 317 (496)
Q Consensus 298 ~v~~s~~i~~~~Y~~~g~~G 317 (496)
++..++..+.++|....+.-
T Consensus 236 Ai~~~~~~i~~~yv~~~~~~ 255 (461)
T PRK10746 236 AVGKVLWRILIFYVGAIFVI 255 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88777777788888754443
No 30
>PRK11387 S-methylmethionine transporter; Provisional
Probab=98.73 E-value=2.9e-05 Score=82.62 Aligned_cols=228 Identities=14% Similarity=0.100 Sum_probs=117.1
Q ss_pred cCCCchhHHHHHHHhhhhhhhhchHHHH-HHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh
Q 043392 75 SRNGNAYYSAFHTLSSGIGVQALVLPLA-FTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG 153 (496)
+|+-+.++..+..++.+||+|++..|-. .+.+|-...++..++.+++......-+.|...+.+. .-.+..-+++.+|
T Consensus 13 ~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~--aGG~y~y~~~~~g 90 (471)
T PRK11387 13 KRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPE--TGAFHVYAARYLG 90 (471)
T ss_pred hhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCHHHHHHHhcC
Confidence 4567889999999999999999987766 567775434556667777777777777777443322 1234556677788
Q ss_pred ---hHHHHHHHHHhhH------HHHHHHHhhcCCCcccccccccchhhhhhHHHHHHhhcCCCCchhhHHHHHHH---HH
Q 043392 154 ---GTCVILVMIGGGT------LKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQLPNLNSIAGVSLIGA---IT 221 (496)
Q Consensus 154 ---G~~i~y~i~~g~~------l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~~l~~l~~L~~~S~~~~---~~ 221 (496)
|..+++....+.. .... ........ .......+.+++.+++..+. .+..+....+..... +.
T Consensus 91 ~~~gf~~gw~~~~~~~~~~~~~~~~~-~~~~~~~~----p~~~~~~~~~~~~~~~~~in-~~gvk~~~~~~~~~~~~ki~ 164 (471)
T PRK11387 91 PATGYTVAWLYWLTWTVALGSSLTAA-GFCMQYWF----PQVPVWPWCLLFCALIFGLN-VVSTRFFAEGEFWFSLIKVV 164 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcc----CcCcHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHH
Confidence 4444433322211 1111 00000000 11111222222222222221 222222222221111 11
Q ss_pred HHHHHHhh-he--eee-e--ccCC-CCcc-cCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCccc
Q 043392 222 AVSYCTII-WV--VSV-I--KDRP-VGVS-YEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRI 293 (496)
Q Consensus 222 ~~~~~~ii-~~--~~i-~--~g~~-~~~~-~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~ 293 (496)
.+..++++ +. ... . ++.. +..+ ++ .+........++..++....|+|.|-..+...-+|+ |+|++
T Consensus 165 ~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~----knP~r- 237 (471)
T PRK11387 165 TILAFIVLGGAAIFGFIPMQDGSPAPGLRNLT--AEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGET----ENPAK- 237 (471)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCcccccC--CCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHh----cChhh-
Confidence 11111110 00 000 0 1100 0111 11 001111224567788888999999999999999999 67864
Q ss_pred CcchhhhhHHHHHHHHHHhhhhhh
Q 043392 294 PMWRGVKFAYLIIAMCLFPLAIGG 317 (496)
Q Consensus 294 ~m~~~v~~s~~i~~~~Y~~~g~~G 317 (496)
++-|++..+..++.++|....+..
T Consensus 238 ~iPrAi~~~~~~~~~~y~~~~~~~ 261 (471)
T PRK11387 238 VIPVAIRTTIARLVIFFVGTVLVL 261 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345888888888888898876544
No 31
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=98.70 E-value=5.3e-05 Score=80.75 Aligned_cols=229 Identities=14% Similarity=0.057 Sum_probs=121.0
Q ss_pred CCCchhHHHHHHHhhhhhhhhchHH-HHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh-
Q 043392 76 RNGNAYYSAFHTLSSGIGVQALVLP-LAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG- 153 (496)
Q Consensus 76 ~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG- 153 (496)
|+-+.++..+..+..+||+|++..| .+.+++|-...++..++.+++.+....-+.|...+.+.. .-.|...+++.+|
T Consensus 2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~-gG~~~~~~~~~~g~ 80 (478)
T TIGR00913 2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVV-SGSFATYASRFVDP 80 (478)
T ss_pred CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHcCc
Confidence 4567788999999999999999876 556777744335556677777777777777775433311 2357777888888
Q ss_pred --hHHHHHHHHHhh------HHHHHHHHhhcCCCcccccccccchhhhhhHHHHHHhhcCCCCchhhHHHHHHH---HHH
Q 043392 154 --GTCVILVMIGGG------TLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQLPNLNSIAGVSLIGA---ITA 222 (496)
Q Consensus 154 --G~~i~y~i~~g~------~l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~~l~~l~~L~~~S~~~~---~~~ 222 (496)
|..+++....+. ............ ........|..++.++...+ -.+..+..+.+..+.. +..
T Consensus 81 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i-n~~gv~~~~~~~~~~~~~ki~~ 154 (478)
T TIGR00913 81 AFGFAVGWNYWLQWLIVLPLELVTASMTIQYW-----TDKVNPAVWIAIFYVFIVII-NLFGVKGYGEAEFWFSSIKILA 154 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHHH-HHhcchHHHHHHHHHHHHHHHH
Confidence 554444332221 111111111100 01112233333222221111 2223333333332211 111
Q ss_pred HHHHHhhheeeeeccC--CCCcc---c---CccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccC
Q 043392 223 VSYCTIIWVVSVIKDR--PVGVS---Y---EPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIP 294 (496)
Q Consensus 223 ~~~~~ii~~~~i~~g~--~~~~~---~---~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~ 294 (496)
+..++++.......+. ..... + ..+.+......+.++..++....|+|.|-.....+-+|+ |+|+| +
T Consensus 155 l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----knP~r-~ 229 (478)
T TIGR00913 155 IIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEA----ANPRK-S 229 (478)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhh----cChhh-H
Confidence 1111111111111111 11000 0 001100001135677889999999999999999999999 67754 3
Q ss_pred cchhhhhHHHHHHHHHHhhhhh
Q 043392 295 MWRGVKFAYLIIAMCLFPLAIG 316 (496)
Q Consensus 295 m~~~v~~s~~i~~~~Y~~~g~~ 316 (496)
+-|++..+..++.++|....+.
T Consensus 230 iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 230 IPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4488888999999999986543
No 32
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.69 E-value=5.6e-05 Score=80.14 Aligned_cols=229 Identities=13% Similarity=0.113 Sum_probs=119.1
Q ss_pred cCCCchhHHHHHHHhhhhhhhhchHHHH-HHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh
Q 043392 75 SRNGNAYYSAFHTLSSGIGVQALVLPLA-FTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG 153 (496)
+|+-+.++.++..+..+||+|++.+|.. .+.+|- ..++..++.++........+.|...+.+. .-...+.+++.+|
T Consensus 8 ~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~--~Gg~y~y~~~~~G 84 (457)
T PRK10580 8 KRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPA--ASSFSRYAQENLG 84 (457)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCHHHHHHHHcC
Confidence 4567788999999999999999999877 556665 35777778888888888888887543332 1234445678888
Q ss_pred ---hHHHHHHHHHhhHHHHHHH-----HhhcCCCcccccccccchhhhhhHHHHHHhhc--CCCCchhhHHHHHHHHHHH
Q 043392 154 ---GTCVILVMIGGGTLKTFFE-----IVCGASETCNVTRLTTVEWYLVFICAAVVLAQ--LPNLNSIAGVSLIGAITAV 223 (496)
Q Consensus 154 ---G~~i~y~i~~g~~l~~~~~-----~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~~--l~~l~~L~~~S~~~~~~~~ 223 (496)
|..+++....+.......+ .+.. . .........|.+.+.++...+.. .|...++..+..+-.+..+
T Consensus 85 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~l~~~ln~~gv~~~~~~~~~~~~~~~~~l 160 (457)
T PRK10580 85 PLAGYITGWTYCFEILIVAIADVTAFGIYMG--V--WFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATI 160 (457)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H--hCCCCChHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHH
Confidence 5555443332221111111 0111 0 00111112232222222222221 2323333322211111111
Q ss_pred HHHHh----hheeeeecc-CCCCcccCcccc-ccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcch
Q 043392 224 SYCTI----IWVVSVIKD-RPVGVSYEPVKE-ISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWR 297 (496)
Q Consensus 224 ~~~~i----i~~~~i~~g-~~~~~~~~~~~~-~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~ 297 (496)
...++ +......+. ...+.... +.+ ......+.++..++....|+|.|-.......+|+ |+|+| +.-|
T Consensus 161 ~~~ii~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~----knP~k-~iPr 234 (457)
T PRK10580 161 IIMIVAGIGIIIWGIGNGGQPTGIHNL-WSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEA----KDPEK-SIPR 234 (457)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCcccc-CCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHh----cChhh-HHHH
Confidence 11100 111111111 11111110 100 0112234577889999999999999999999999 67865 2347
Q ss_pred hhhhHHHHHHHHHHhhhhh
Q 043392 298 GVKFAYLIIAMCLFPLAIG 316 (496)
Q Consensus 298 ~v~~s~~i~~~~Y~~~g~~ 316 (496)
++..+...+.++|....+.
T Consensus 235 Ai~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 235 AINSVPMRILVFYVGTLFV 253 (457)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7776666677777766433
No 33
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=98.68 E-value=1e-05 Score=85.36 Aligned_cols=226 Identities=12% Similarity=0.134 Sum_probs=112.1
Q ss_pred cCCCchhHHHHHHHhhhhhhhhchHHHH-HHhcChh-HHHHHHHHHHHHHHHHHHHHHhccccc--cCCccCcHHHHHHH
Q 043392 75 SRNGNAYYSAFHTLSSGIGVQALVLPLA-FTTLGWT-WGIICLLLVFIWQLYTLWLLIQLHESE--SGTRYSRYLRLSMA 150 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~-~giill~~~~~l~~~t~~lL~~~~~~~--~~~~~~sy~~l~~~ 150 (496)
+|+-+.++++...++.++|+|++..|.. .++.|-. ..++..++.+++.........|..... .|. ...|. ++
T Consensus 7 ~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG-~y~y~---~~ 82 (445)
T PRK11357 7 QRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGA-DYVYL---KN 82 (445)
T ss_pred cccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-ceeeH---HH
Confidence 4678889999999999999999999986 4455632 234445555666666666666653222 221 34443 35
Q ss_pred Hhh---hHHHHHHHH-HhhH-----HHHHHHHhhcCCCcccccccccchhhhhhHHHH--HHhhcCCCCchhhHHHHHHH
Q 043392 151 AFG---GTCVILVMI-GGGT-----LKTFFEIVCGASETCNVTRLTTVEWYLVFICAA--VVLAQLPNLNSIAGVSLIGA 219 (496)
Q Consensus 151 ~fG---G~~i~y~i~-~g~~-----l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~--~pl~~l~~l~~L~~~S~~~~ 219 (496)
.+| |...++... .... ............. +.....+.++...+. +-..-.+..+....+..+..
T Consensus 83 ~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~-----~~~~~~~~~~~~~~~~~~~~ln~~gv~~~~~v~~~~~ 157 (445)
T PRK11357 83 AGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLT-----PIDPLLGKFIAAGLIIAFMLLHLRSVEGGAAFQTLIT 157 (445)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 566 444444311 1110 0001100110000 000111111111111 11112233333333333222
Q ss_pred HHHHHHHHhhheeee--eccCCCCcccCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcch
Q 043392 220 ITAVSYCTIIWVVSV--IKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWR 297 (496)
Q Consensus 220 ~~~~~~~~ii~~~~i--~~g~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~ 297 (496)
+..+...+++++..+ .++. +.............++.++..++....|+|.|-.......+|+ |||+| ++-|
T Consensus 158 ~~~~~~l~~~ii~g~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r-~iP~ 230 (445)
T PRK11357 158 IAKIIPFTIVIGLGIFWFKAE--NFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEI----KNPGK-TMPR 230 (445)
T ss_pred HHHHHHHHHHHHHHHHHcCCc--cccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHh----cCccc-cchH
Confidence 222211111111111 1211 1100000000111224567788899999999999999999999 67764 3448
Q ss_pred hhhhHHHHHHHHHHhhhhh
Q 043392 298 GVKFAYLIIAMCLFPLAIG 316 (496)
Q Consensus 298 ~v~~s~~i~~~~Y~~~g~~ 316 (496)
++..++.++.++|.+....
T Consensus 231 Ai~~~~~i~~~~Y~l~~~~ 249 (445)
T PRK11357 231 ALIGSCLLVLVLYTLLALV 249 (445)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877654
No 34
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=98.66 E-value=1.8e-05 Score=85.85 Aligned_cols=235 Identities=13% Similarity=0.087 Sum_probs=124.0
Q ss_pred ccCCCchhHHHHHHHhhhhhhhhchHHHHH--HhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCC-ccCcHHHHHHH
Q 043392 74 ESRNGNAYYSAFHTLSSGIGVQALVLPLAF--TTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGT-RYSRYLRLSMA 150 (496)
Q Consensus 74 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af--~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~-~~~sy~~l~~~ 150 (496)
.+|+-+.++.+..-+.+++|+|+..+|-.. +..|-. .++..++.++.+........|...+.+.. ....|.. +
T Consensus 26 L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~---~ 101 (557)
T TIGR00906 26 MKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSY---V 101 (557)
T ss_pred hhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHH---H
Confidence 356788999999999999999999999643 457754 45556677777777777777764332221 1233332 3
Q ss_pred Hhh---hHHHH------HHHHH-------hhHHHHHHHHhhcCC--C--cccccccccch-hhhhhHHHHHHhhcCCCCc
Q 043392 151 AFG---GTCVI------LVMIG-------GGTLKTFFEIVCGAS--E--TCNVTRLTTVE-WYLVFICAAVVLAQLPNLN 209 (496)
Q Consensus 151 ~fG---G~~i~------y~i~~-------g~~l~~~~~~~~~~~--~--~~~~~~l~~~~-~~ii~~~~~~pl~~l~~l~ 209 (496)
.+| |..++ |.+.. ++.+..++....+.. . ......+.... +..+..++++-+...+..+
T Consensus 102 ~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik 181 (557)
T TIGR00906 102 TVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVK 181 (557)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhchh
Confidence 445 22222 22211 222222222100000 0 00000011111 1111111111122335555
Q ss_pred hhhHHHHHHHHHHHHHHHhhheeeeeccCCCCcccCcc--ccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCC
Q 043392 210 SIAGVSLIGAITAVSYCTIIWVVSVIKDRPVGVSYEPV--KEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTA 287 (496)
Q Consensus 210 ~L~~~S~~~~~~~~~~~~ii~~~~i~~g~~~~~~~~~~--~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~ 287 (496)
..+++..+..+..+..+.++++.+..+.+..+...... .+......+.+++.+.....|+|.|-..+...-+|+
T Consensus 182 ~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~---- 257 (557)
T TIGR00906 182 ESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEV---- 257 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhc----
Confidence 55555554444333333333333332222221110000 001111234678889999999999999999999999
Q ss_pred CCCcccCcchhhhhHHHHHHHHHHhhhhhh
Q 043392 288 KKPSRIPMWRGVKFAYLIIAMCLFPLAIGG 317 (496)
Q Consensus 288 k~P~~~~m~~~v~~s~~i~~~~Y~~~g~~G 317 (496)
|+|++ ++-|++..++.++.++|..+.+.-
T Consensus 258 knP~r-~iP~aii~sl~i~~vlY~lv~~~l 286 (557)
T TIGR00906 258 KNPQR-AIPIGIVTSLLVCFVAYFLMSAAL 286 (557)
T ss_pred cCccc-cccHHHHHHHHHHHHHHHHHHHHH
Confidence 67764 344899999999999999876544
No 35
>TIGR00930 2a30 K-Cl cotransporter.
Probab=98.65 E-value=4.1e-05 Score=87.36 Aligned_cols=229 Identities=13% Similarity=0.126 Sum_probs=118.6
Q ss_pred cCCCchhHHHHHH-Hhhhhhhhhch-HHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhcccc---ccCCccCcHHHHHH
Q 043392 75 SRNGNAYYSAFHT-LSSGIGVQALV-LPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHES---ESGTRYSRYLRLSM 149 (496)
Q Consensus 75 ~~~~s~~~a~~~l-~~~~iG~GiL~-LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~---~~~~~~~sy~~l~~ 149 (496)
.++-+++.+++.- +..++|+|+.- +++...++|...+++.+++.++++..|..-+.+.... ..| -.|. ...
T Consensus 75 ~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aG---G~Y~-yis 150 (953)
T TIGR00930 75 AVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGG---GAYY-LIS 150 (953)
T ss_pred CcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc---HHHH-HHH
Confidence 4566677777777 88999999865 5666779998878888889999999888888887532 112 1222 234
Q ss_pred HHhh---hHHH-------------HHHHHHhhHHHHHHHHhhcCCCcccccccc-cchhhhhhHHHHHHhhcCCCCchhh
Q 043392 150 AAFG---GTCV-------------ILVMIGGGTLKTFFEIVCGASETCNVTRLT-TVEWYLVFICAAVVLAQLPNLNSIA 212 (496)
Q Consensus 150 ~~fG---G~~i-------------~y~i~~g~~l~~~~~~~~~~~~~~~~~~l~-~~~~~ii~~~~~~pl~~l~~l~~L~ 212 (496)
++|| |..+ .|.+..++.+..++...+. . -...... .+.+.++..+++..+. ..-.+.-+
T Consensus 151 ralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~--~-~~~~~~~~~~iia~i~l~ll~~In-~~Gvk~~a 226 (953)
T TIGR00930 151 RSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGS--K-IMVDPINDIRIYGTVTVVVLLGIS-FAGMEWEN 226 (953)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--c-cccCccccchHHHHHHHHHHHHHH-HhhHHHHH
Confidence 5555 3333 3333344444443321100 0 0000111 1112121122222221 22223333
Q ss_pred HHHHHHHHHHHHHHHhhheeeeecc-CCCC---cccC--cccccc--chhh-HHHHHHHHHHHHHhhccccchHhHhhcC
Q 043392 213 GVSLIGAITAVSYCTIIWVVSVIKD-RPVG---VSYE--PVKEIS--DVAT-IFSILNSLGIIAFAFRGHNLVLEVQGTM 283 (496)
Q Consensus 213 ~~S~~~~~~~~~~~~ii~~~~i~~g-~~~~---~~~~--~~~~~~--~~~~-~~~~~~a~gi~~faf~~h~~v~~I~~~m 283 (496)
.+..+-.++.++.++.+++.++... ..+. ..++ .+.+.. .... ..++...++++.+||.|......+-.|+
T Consensus 227 k~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgEl 306 (953)
T TIGR00930 227 KAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDL 306 (953)
T ss_pred HHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3332222221222222222222111 0000 0000 000000 0011 1236778888888999998889999999
Q ss_pred CCCCCCCcccCcchhhhhHHHHHHHHHHhhhhh
Q 043392 284 PSTAKKPSRIPMWRGVKFAYLIIAMCLFPLAIG 316 (496)
Q Consensus 284 ~~~~k~P~~~~m~~~v~~s~~i~~~~Y~~~g~~ 316 (496)
|+|++ .+-|++..++.+++++|+++.+.
T Consensus 307 ----KnP~r-~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 307 ----KDPQK-AIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred ----cChhh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 67764 34489999999999999998753
No 36
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.62 E-value=8.3e-05 Score=78.79 Aligned_cols=226 Identities=12% Similarity=-0.002 Sum_probs=111.8
Q ss_pred cCCCchhHHHHHHHhhhhhhhhchHHHH-HHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh
Q 043392 75 SRNGNAYYSAFHTLSSGIGVQALVLPLA-FTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG 153 (496)
+|+-+.++..+..++.+||+|++..|-. .+++|- ..++..++.++..+....-+.|...+.+. .-.+.+-+++.+|
T Consensus 11 ~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~--aGg~y~~~~~~~g 87 (456)
T PRK10238 11 KRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPV--AGSFSHFAYKYWG 87 (456)
T ss_pred hccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHcC
Confidence 4677889999999999999999888876 445554 45556677777777777777777543332 2344555667788
Q ss_pred ---hHHHHHHHHHhh------HHHHHHHHhhcCCCcccccccccchhhhhhHHHHHHhhc--CCCCchhhHHHHHHHHHH
Q 043392 154 ---GTCVILVMIGGG------TLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQ--LPNLNSIAGVSLIGAITA 222 (496)
Q Consensus 154 ---G~~i~y~i~~g~------~l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~~--l~~l~~L~~~S~~~~~~~ 222 (496)
|..+++....+. ....+.. +..... ++.....+.+++..+...+.. .|...++..+..+--+..
T Consensus 88 ~~~gf~~Gw~~~~~~~~~~~~~~~~~~~-~~~~~~----p~~~~~~~~~i~~~~~~~lN~~gv~~~~~~~~~~~~iki~~ 162 (456)
T PRK10238 88 SFAGFASGWNYWVLYVLVAMAELTAVGK-YIQFWY----PEIPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAIIKVIA 162 (456)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhc----CcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 443333322211 1111111 111000 111112222222222111111 222333332221111111
Q ss_pred HHHHHh-hheeeeeccCCCCcccCc-cc-cccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcchhh
Q 043392 223 VSYCTI-IWVVSVIKDRPVGVSYEP-VK-EISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGV 299 (496)
Q Consensus 223 ~~~~~i-i~~~~i~~g~~~~~~~~~-~~-~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v 299 (496)
+..+++ .+.........+...... +. +......+.++..+++...|+|.|-.......+|+ |+|+| .+-|++
T Consensus 163 i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~----knP~r-~iPrAi 237 (456)
T PRK10238 163 VVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEA----DNPEQ-SIPKAT 237 (456)
T ss_pred HHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhh----cChhh-HHHHHH
Confidence 111111 011101110011111110 00 01112234567778888999999999999999999 67754 344777
Q ss_pred hhHHHHHHHHHHhh
Q 043392 300 KFAYLIIAMCLFPL 313 (496)
Q Consensus 300 ~~s~~i~~~~Y~~~ 313 (496)
..+.....++|...
T Consensus 238 ~~~~~~i~~~y~~~ 251 (456)
T PRK10238 238 NQVIYRILIFYIGS 251 (456)
T ss_pred HHHHHHHHHHHHHH
Confidence 76666667777654
No 37
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.60 E-value=4.3e-06 Score=86.60 Aligned_cols=344 Identities=13% Similarity=0.136 Sum_probs=182.9
Q ss_pred ccCCCchhHHHHHHHhhhhhhhhchHHHHHHhcCh--hHHHHHHHHHHHHHHHHHHHHHhcccc--ccCCccCcHHHHHH
Q 043392 74 ESRNGNAYYSAFHTLSSGIGVQALVLPLAFTTLGW--TWGIICLLLVFIWQLYTLWLLIQLHES--ESGTRYSRYLRLSM 149 (496)
Q Consensus 74 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~--~~giill~~~~~l~~~t~~lL~~~~~~--~~~~~~~sy~~l~~ 149 (496)
.+||-+.+.+++.+++.+||+|+..-|....+.+- ..+++.-++.|+++......-.|.... ++|. +|.=+ .
T Consensus 10 ~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGg---d~ayi-~ 85 (479)
T KOG1287|consen 10 LKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGG---DYAYI-S 85 (479)
T ss_pred ccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc---chhhH-H
Confidence 45678889999999999999999999999665552 344455568888998888888887321 2332 22222 2
Q ss_pred HHhh-----------------hHHHHHHHHHhhH-HHHHHHHhhcCCCcccccccccchhhhhhHHHHHHhhcCCCCchh
Q 043392 150 AAFG-----------------GTCVILVMIGGGT-LKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQLPNLNSI 211 (496)
Q Consensus 150 ~~fG-----------------G~~i~y~i~~g~~-l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~~l~~l~~L 211 (496)
++|| ..+..+.+..++. ++.++. .|... +.+.-..+.+++.+....|..+.
T Consensus 86 ~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-------~c~~p----~~~~~lla~~~l~~lt~~n~~~V 154 (479)
T KOG1287|consen 86 EAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-------LCDVP----RVASKLLAAALLVLLTLINSFSV 154 (479)
T ss_pred HHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-------CCCCc----hHHHHHHHHHHHHHHHHHhhhhh
Confidence 5676 2222233333333 333322 23222 22222333344444455666666
Q ss_pred hHHHHHHHHHHH---HHHHhhheeee---eccCCCCcccCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCC
Q 043392 212 AGVSLIGAITAV---SYCTIIWVVSV---IKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPS 285 (496)
Q Consensus 212 ~~~S~~~~~~~~---~~~~ii~~~~i---~~g~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~ 285 (496)
++.+.+=.+++. ..+.++.+.++ .+|...+.+..+. .....+..++..++-.-.|||.|=+.+=-+.+|+
T Consensus 155 ~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f--~g~~~~~g~i~lafysglfa~~GWd~lN~vteEi-- 230 (479)
T KOG1287|consen 155 KWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEF--EGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEI-- 230 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhchheeEeccccccccccc--ccCcCchHHHHHHHHHhhhcccCchhhccchHhh--
Confidence 665554443332 12222222222 2232222221111 1122234457788888899999999988899999
Q ss_pred CCCCCcccCcchhhhhHHHHHHHHHHhhhhhhhhcccCccccccccccCCCCCCChhhhhhhccCCCchhHHHHHHHHHH
Q 043392 286 TAKKPSRIPMWRGVKFAYLIIAMCLFPLAIGGYSAYGNLANDIYDAYCQMPGNEGMFDALHKYHNHDTSKVLLGLTSLFV 365 (496)
Q Consensus 286 ~~k~P~~~~m~~~v~~s~~i~~~~Y~~~g~~GY~~fG~~~~~~~~~i~~~~~~~~il~~~~~~~g~~~~~~l~~ia~~~~ 365 (496)
|+|.| ++-|++..++.+++++|.++=+..+.+--.+ | -.. .+.+-..|.+. -.+.+. -+.-+++
T Consensus 231 --knP~k-tLP~Ai~isi~lvt~iYil~NvAy~~vls~~--e------~l~-S~aVav~Fa~~---~~G~~~-~~ip~~V 294 (479)
T KOG1287|consen 231 --KNPRR-TLPRAILISIPLVTVIYVLVNVAYFTVLSPD--E------ILS-SDAVAVTFADR---ILGVFA-WAIPFSV 294 (479)
T ss_pred --cCccc-cchHHHHHhhHHHHHHHHHhHhheeEecCHH--H------hcc-cchHHHHHHHH---hccchH-HHHHHHH
Confidence 67753 5669999999999999998766554443321 1 111 01222223211 011121 1222233
Q ss_pred HHHHhhhhccccchh----HHHHHH-hh----hccCCCCCcchhHHHHHHHHHHHHHHHHHhCcChHHHHHHHhhhHh-h
Q 043392 366 VISSLSSFQIFAMPV----FDNLEF-KY----TSKYNKPCPWWLRSGIRVFFGSVEFFISAALPFLRNLAALIGGIAL-P 435 (496)
Q Consensus 366 ~~~~l~sypl~~~p~----~~~~e~-~~----~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~iP~~~~v~~lvGa~~~-~ 435 (496)
.++.+.+.--..+.. +..-++ .+ ...+.++...+ ...++-....++..++.|+..+++.++=... .
T Consensus 295 alS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~----~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~ 370 (479)
T KOG1287|consen 295 ALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPR----PALLFSGLLSIVLSLIGDFDQLINYVSFAYWLF 370 (479)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCCh----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333333322111111 111111 11 11111110111 1123334445555666789999999987766 7
Q ss_pred hhhhHhHHHHHHHhCCCCcch
Q 043392 436 ITLAYPCFMWIHIRKPTTYSA 456 (496)
Q Consensus 436 l~filP~ll~lk~~~~~~~~~ 456 (496)
..+.+=+++|++.++++..++
T Consensus 371 ~~l~~~gll~lR~k~p~~~rP 391 (479)
T KOG1287|consen 371 RGLSMAGLLWLRWKHPPLPRP 391 (479)
T ss_pred HHHHHHHHHHHHhhCCCCCCC
Confidence 778888899999988775543
No 38
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.59 E-value=2.4e-05 Score=82.58 Aligned_cols=221 Identities=14% Similarity=0.074 Sum_probs=110.6
Q ss_pred cCCCchhHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh-
Q 043392 75 SRNGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG- 153 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG- 153 (496)
+|+-+.++.+...+..++|....+.+.++++.|+..-++..++.++........+.|...+.+.. -....-+++.||
T Consensus 6 ~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~--Gg~y~~~~~~~G~ 83 (442)
T TIGR00908 6 KKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTA--GGGYGFARRAFGP 83 (442)
T ss_pred hccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCHHHHHHHHhCc
Confidence 35677788888888888885555668889999996444445555555555566677764433221 233445567777
Q ss_pred --hHHHHHHHHH-------------hhHHHHHHHHhhcCCCcccccccccchhhhhhHHHHHHhhcCCCCchhhHHHHHH
Q 043392 154 --GTCVILVMIG-------------GGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQLPNLNSIAGVSLIG 218 (496)
Q Consensus 154 --G~~i~y~i~~-------------g~~l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~~l~~l~~L~~~S~~~ 218 (496)
|...++.... ++.+..++ + ......+.+++..+...+ -.+..+..+++..+.
T Consensus 84 ~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~----p--------~~~~~~~~~~~~~~~~~l-n~~g~~~~~~i~~~~ 150 (442)
T TIGR00908 84 WGGFLAGTAILIEFAFAPPAIACFIGAYCESLF----P--------VGPGWLAALVFYIVFIGI-NILGVGEAAKLEFVV 150 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c--------cCchhHHHHHHHHHHHHH-HHHHHHHHHhHHHHH
Confidence 4433333222 22222111 1 111111122111111111 112222232222222
Q ss_pred HHHHHHHHHhhheeeeeccCCCCcccCccc--cccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcc
Q 043392 219 AITAVSYCTIIWVVSVIKDRPVGVSYEPVK--EISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMW 296 (496)
Q Consensus 219 ~~~~~~~~~ii~~~~i~~g~~~~~~~~~~~--~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~ 296 (496)
.+..+....+++.....+.+..+....+.. +......+.+++.++...+|+|.|...+...-+|+ |+|++ +.-
T Consensus 151 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r-~ip 225 (442)
T TIGR00908 151 TAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEET----KNPKR-DIP 225 (442)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCccc-ccC
Confidence 111111111111111111001010000000 00111234577888888999999999999999999 67754 233
Q ss_pred hhhhhHHHHHHHHHHhhhh
Q 043392 297 RGVKFAYLIIAMCLFPLAI 315 (496)
Q Consensus 297 ~~v~~s~~i~~~~Y~~~g~ 315 (496)
|++..+..++.++|..+-.
T Consensus 226 rai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 226 RGLIGAILTLLALAAGILV 244 (442)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888888876643
No 39
>PRK10836 lysine transporter; Provisional
Probab=98.57 E-value=0.00019 Score=76.78 Aligned_cols=234 Identities=12% Similarity=0.123 Sum_probs=117.8
Q ss_pred cCCCchhHHHHHHHhhhhhhhhchHHH-HHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh
Q 043392 75 SRNGNAYYSAFHTLSSGIGVQALVLPL-AFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG 153 (496)
+|+-+.++..+..++++||+|++.+|- +.++.|-...++..++.++++.....-+.|...+.+.. -....-+++.+|
T Consensus 14 ~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~s--Gg~y~y~~~~~g 91 (489)
T PRK10836 14 RRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVS--GSFATYGQNYVE 91 (489)
T ss_pred cccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHcC
Confidence 456788999999999999999999996 67778864457777888888888888888875433221 222333334444
Q ss_pred ---hHHHHHHHHHhhH----HHHH-HHHhhcCCCcccccccccchhhhhhHHHHHHhh--cCCCCchhhHHHHHHHHHHH
Q 043392 154 ---GTCVILVMIGGGT----LKTF-FEIVCGASETCNVTRLTTVEWYLVFICAAVVLA--QLPNLNSIAGVSLIGAITAV 223 (496)
Q Consensus 154 ---G~~i~y~i~~g~~----l~~~-~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~--~l~~l~~L~~~S~~~~~~~~ 223 (496)
|..+++....+-. .... ......... .......+..++.+++..+. -.|....+..+..+.-+..+
T Consensus 92 ~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~lN~~gv~~~~~~~~~~~~~ki~~~ 167 (489)
T PRK10836 92 EGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWF----PDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTV 167 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC----CCCchHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 3333322211111 0000 000111000 01111122222222221111 12323333222221111111
Q ss_pred HH---HHhhheeeeeccCC-CCc-ccCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcchh
Q 043392 224 SY---CTIIWVVSVIKDRP-VGV-SYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRG 298 (496)
Q Consensus 224 ~~---~~ii~~~~i~~g~~-~~~-~~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~ 298 (496)
.. ..++......++.. .+. ++.+ .+......+.++..+.....|+|.|-..+...-+|+ |+|+| ++-|+
T Consensus 168 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~----knP~r-~iPrA 241 (489)
T PRK10836 168 IVFIIVGVLMIIGIFKGAEPAGWSNWTI-GDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGES----EDPAK-NIPRA 241 (489)
T ss_pred HHHHHHHHHHHHcCCCCCCCCccccCCC-CCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHh----cCHHH-HHHHH
Confidence 11 11111111111111 011 1110 000011234455556666789999999999999999 67854 45588
Q ss_pred hhhHHHHHHHHHHhhhhhhhhc
Q 043392 299 VKFAYLIIAMCLFPLAIGGYSA 320 (496)
Q Consensus 299 v~~s~~i~~~~Y~~~g~~GY~~ 320 (496)
+..++..+.++|......-...
T Consensus 242 i~~~~~~v~~~Yvl~~~~~~~~ 263 (489)
T PRK10836 242 VRQVFWRILLFYVFAILIISLI 263 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHhee
Confidence 8888999999999876543333
No 40
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=98.55 E-value=3e-05 Score=83.20 Aligned_cols=234 Identities=13% Similarity=0.111 Sum_probs=116.2
Q ss_pred ccCCCchhHHHHHHHhhhhhhhhchHHHH-HHhcChh-HHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHH
Q 043392 74 ESRNGNAYYSAFHTLSSGIGVQALVLPLA-FTTLGWT-WGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAA 151 (496)
Q Consensus 74 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~-~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~ 151 (496)
.+|+-+.++.+...+++++|+|++..|.. .+++|-. ..++..++.+++.........|.....+.. -....-.++.
T Consensus 40 l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~s--GG~y~~~~~~ 117 (501)
T TIGR00911 40 LKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKS--GGEYNYILEV 117 (501)
T ss_pred cCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CchhhhHHhH
Confidence 35677889999999999999999999875 5556643 122334555666666666677764332211 1223334456
Q ss_pred hh---hHHHHHHHHH----hh-HHH-HHHH-Hhhc-CCCcccccccccchhhhhhHHHHHH--hhcCCCCchhhHHHHHH
Q 043392 152 FG---GTCVILVMIG----GG-TLK-TFFE-IVCG-ASETCNVTRLTTVEWYLVFICAAVV--LAQLPNLNSIAGVSLIG 218 (496)
Q Consensus 152 fG---G~~i~y~i~~----g~-~l~-~~~~-~~~~-~~~~~~~~~l~~~~~~ii~~~~~~p--l~~l~~l~~L~~~S~~~ 218 (496)
+| |...++.... +. ... ..+. .... ..+.+ ........++...+++. ..-.+..+...++..+.
T Consensus 118 ~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~---~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~~~i~ 194 (501)
T TIGR00911 118 FGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDC---EVPEWAIRLVAVLCVLLLTLVNCLSVKWATRVQDIF 194 (501)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 77 3333332111 10 000 0000 0000 00100 00111111111111111 11223344444444333
Q ss_pred HHHHHHHHHhhheee---eeccCCCCcccCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCc
Q 043392 219 AITAVSYCTIIWVVS---VIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPM 295 (496)
Q Consensus 219 ~~~~~~~~~ii~~~~---i~~g~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m 295 (496)
.+..+..++++++.+ ..++...+.+....... ......++..++....|+|.|-..+..+.+|+ |+|++ +.
T Consensus 195 ~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~-~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~----knP~r-~i 268 (501)
T TIGR00911 195 TACKLLALLLIIITGWVQLGKGGVESLNPKNAFEG-TETSAGGIVLAFYSGIWAYGGWNYLNFVTEEV----KNPYR-TL 268 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccCcccccCC-CCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHh----cCchh-hh
Confidence 332222211111111 11221111111100000 11235677888999999999999999999999 67754 33
Q ss_pred chhhhhHHHHHHHHHHhhhhhhh
Q 043392 296 WRGVKFAYLIIAMCLFPLAIGGY 318 (496)
Q Consensus 296 ~~~v~~s~~i~~~~Y~~~g~~GY 318 (496)
-|++..+..++.++|.+..+.-.
T Consensus 269 PrAi~~s~~~v~~~Y~l~~~a~~ 291 (501)
T TIGR00911 269 PIAIIISMPIVTFIYVLTNIAYF 291 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999998865443
No 41
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=98.51 E-value=0.00012 Score=77.43 Aligned_cols=215 Identities=13% Similarity=0.066 Sum_probs=112.5
Q ss_pred HhhhhhhhhchHHH-HHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh---hHHHHHHHHH
Q 043392 88 LSSGIGVQALVLPL-AFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG---GTCVILVMIG 163 (496)
Q Consensus 88 ~~~~iG~GiL~LP~-af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG---G~~i~y~i~~ 163 (496)
++++||+|++..|- +.++.|. ..++..++.+++.......+.|...+.+. .-...+-+++.+| |..+++....
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~--~Gg~y~y~~~~~G~~~gf~~gw~~~~ 80 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPD--TGSFSTYADKAIGRWAGYTIGWLYWW 80 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHcChHHHHHHHHHHHH
Confidence 56789999999998 7888886 47777788888888888888887543322 2345666778888 5555544432
Q ss_pred hhHHHH-----HHHHhhcCCCcccccccccchhhhhhHHHHHHhhcCCCCchhhHHHHHHH---HHHHHHHHhhheeeee
Q 043392 164 GGTLKT-----FFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQLPNLNSIAGVSLIGA---ITAVSYCTIIWVVSVI 235 (496)
Q Consensus 164 g~~l~~-----~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~~l~~l~~L~~~S~~~~---~~~~~~~~ii~~~~i~ 235 (496)
+..+.. ....... .. .+......+.+++..+...+. ....+..+.+..+.. +..+..++ +......
T Consensus 81 ~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~l~~~~~lN-~~gv~~~~~i~~~~~~~ki~~li~~i-i~~~~~~ 154 (446)
T PRK10197 81 FWVLVIPLEANIAAMILH--SW--VPGIPIWLFSLVITLALTGSN-LLSVKNYGEFEFWLALCKVIAILAFI-FLGAVAI 154 (446)
T ss_pred HHHHHHHHHHHHHHHHHH--hc--cccCcHHHHHHHHHHHHHHHH-HHhhHHHhhhHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 211110 0000111 00 011111122222222111111 222222222222211 11111111 1111001
Q ss_pred ccCCC---CcccCc-cc-cccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcchhhhhHHHHHHHHH
Q 043392 236 KDRPV---GVSYEP-VK-EISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVKFAYLIIAMCL 310 (496)
Q Consensus 236 ~g~~~---~~~~~~-~~-~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v~~s~~i~~~~Y 310 (496)
.+..+ .....+ +. +......+.++..++....|+|.|-..+....+|+ |+|+| ++-|++..++..+.++|
T Consensus 155 ~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~----knP~r-~iPrai~~~~~~i~i~Y 229 (446)
T PRK10197 155 SGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAES----DTPEK-HIVRATNSVIWRISIFY 229 (446)
T ss_pred cCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHh----cChhh-hHHHHHHHHHHHHHHHH
Confidence 11111 001000 00 00012245688899999999999999999999999 67764 34588888888888888
Q ss_pred Hhhhhh
Q 043392 311 FPLAIG 316 (496)
Q Consensus 311 ~~~g~~ 316 (496)
....+.
T Consensus 230 il~~~~ 235 (446)
T PRK10197 230 LCSIFV 235 (446)
T ss_pred HHHHHH
Confidence 876554
No 42
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.39 E-value=3.2e-05 Score=77.95 Aligned_cols=222 Identities=21% Similarity=0.236 Sum_probs=126.4
Q ss_pred CchhHHHHHHHhhhhhhhhchHHHHHHhc---ChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh-
Q 043392 78 GNAYYSAFHTLSSGIGVQALVLPLAFTTL---GWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG- 153 (496)
Q Consensus 78 ~s~~~a~~~l~~~~iG~GiL~LP~af~~~---G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG- 153 (496)
-|..|....+..+.+|+|++.+|....+. ||+ ..++.+.......++..+..++.++ .+..|..++.+|
T Consensus 2 IS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi----~~ll~~~~~l~~~~l~~~l~~~~p~---~~l~~~~~~~~Gk 74 (320)
T PF03845_consen 2 ISPRQLFFLLISSIIGTGILFLPAILAEQAGDAWI----SVLLGGLIGLLLALLIYYLLKRFPG---KTLVEISEKLFGK 74 (320)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH----HHHHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHhCc
Confidence 45678999999999999999999997665 465 3344444444445555555443333 588899999998
Q ss_pred --hH------HHHHHHHHhhHHHHHHHHhhcCCCcccccccccchhhhhhHHHHHHhhcCCCCchhhHHHHHHHHHHHHH
Q 043392 154 --GT------CVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQLPNLNSIAGVSLIGAITAVSY 225 (496)
Q Consensus 154 --G~------~i~y~i~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~~l~~l~~L~~~S~~~~~~~~~~ 225 (496)
|. ..-++...+..++...+..... --+-+...++.....+.......+.++.+...+.+-....+..
T Consensus 75 ~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~-----~lp~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~ 149 (320)
T PF03845_consen 75 WLGKIINLLYILYFLLISALVLREFSEFIKTY-----LLPETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLIL 149 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 22 2223334444444443322110 0011223333322233333444566777776554443433333
Q ss_pred HHhhheeeeeccCCCCcccCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcchhhhhHHHH
Q 043392 226 CTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVKFAYLI 305 (496)
Q Consensus 226 ~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v~~s~~i 305 (496)
...+......+.+. ....|+. ..++.+++.+.-...+.|.+-..+.-+...+ |+|++. +|....+..+
T Consensus 150 ~~~i~~~~~~~~~~--~~l~P~~----~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~----~~~~~~--~k~~~~~~~~ 217 (320)
T PF03845_consen 150 LLLILLLSIPNIDW--DNLLPVL----ESGIKPILKGSLVISFPFGGIEILLFLFPFV----KDKKKL--KKSLLIAILI 217 (320)
T ss_pred HHHHHHHhcccCCH--HHeeCcc----cCChHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCchHH--HHHHHHHHHH
Confidence 33333333322111 1112221 2345566777777778888877777788888 455443 4788888888
Q ss_pred HHHHHHhhhhhhhhcccC
Q 043392 306 IAMCLFPLAIGGYSAYGN 323 (496)
Q Consensus 306 ~~~~Y~~~g~~GY~~fG~ 323 (496)
..++|...-+.....||.
T Consensus 218 ~~~~~~~~~~~~i~vfG~ 235 (320)
T PF03845_consen 218 SGLFLLFIIFITIGVFGP 235 (320)
T ss_pred HHHHHHHHHHHHHHhcCH
Confidence 888888777777777775
No 43
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=98.18 E-value=0.0014 Score=69.21 Aligned_cols=63 Identities=21% Similarity=0.278 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcchhhhhHHHHHHHHHHhhhhhhhhcccC
Q 043392 256 IFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVKFAYLIIAMCLFPLAIGGYSAYGN 323 (496)
Q Consensus 256 ~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v~~s~~i~~~~Y~~~g~~GY~~fG~ 323 (496)
...+..++....++|.|-.......+|+ |+|++. ..|++..++.++.++|......-....++
T Consensus 200 ~~~~~~~~~~~~~~f~G~e~~~~~a~E~----knp~r~-ip~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 200 FGGILAAILLAFFAFTGFEAIATLAEEV----KNPKRT-IPRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHh----cCcccc-ccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 3467888999999999999999999999 566543 34899999999999999888777666665
No 44
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.13 E-value=0.0031 Score=67.22 Aligned_cols=54 Identities=9% Similarity=-0.005 Sum_probs=40.5
Q ss_pred HHHHhhccccchHhHhhcCCCCCCCCcccCcchhhhhHHHHHHHHHHhhhhhhhhcccC
Q 043392 265 IIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVKFAYLIIAMCLFPLAIGGYSAYGN 323 (496)
Q Consensus 265 i~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v~~s~~i~~~~Y~~~g~~GY~~fG~ 323 (496)
.+.|+|.|-......-+|+ |+|+| +.-|++..+..++.++|....+.-....++
T Consensus 202 ~~~~af~G~e~~~~~a~E~----knP~r-~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~ 255 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDV----DNPDK-NYPIAILIAALGTVLIFVLGTLAIAFIIPR 255 (474)
T ss_pred HHHHHHhchhHhHHHHHhc----cCccc-chhHHHHHHHHHHHHHHHHHHHHHHhccCH
Confidence 4578999999999999999 66754 344899999999999998765544333343
No 45
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.01 E-value=0.01 Score=63.33 Aligned_cols=50 Identities=18% Similarity=0.059 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcchhhhhHHHHHHHHHHh
Q 043392 258 SILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVKFAYLIIAMCLFP 312 (496)
Q Consensus 258 ~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v~~s~~i~~~~Y~~ 312 (496)
+...++-...|+|.|-......-+|+ |+|+| .+-|++..+..+..++|..
T Consensus 218 ~~~~~~~~~~fsf~G~e~~~~~a~E~----knP~r-~iP~Ai~~s~~i~~~~~~~ 267 (482)
T TIGR00907 218 AFLLGLLNPAWSMTGYDGTAHMAEEI----ENPEV-VGPRAIIGAVAIGIVTGFC 267 (482)
T ss_pred hhhhhhhhhHHHhcCcchhhHHHHhc----CChhh-hcCHHHHHHHHHHHHHHHH
Confidence 45566666789999999999999999 67754 3448888777666554433
No 46
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=97.96 E-value=0.019 Score=61.51 Aligned_cols=54 Identities=17% Similarity=0.285 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcchhhhhHHHHHHHHHHhhhh
Q 043392 257 FSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVKFAYLIIAMCLFPLAI 315 (496)
Q Consensus 257 ~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v~~s~~i~~~~Y~~~g~ 315 (496)
.++..++....|+|.|-..+....+|+ |+|++ ..-|++..+...+.++|.+..+
T Consensus 211 ~~~~~~~~~~~~~f~G~e~~~~~a~E~----~~p~~-~~p~ai~~~~~~~~~~y~l~~~ 264 (496)
T PRK15238 211 IAVLSFVVFAIFAYGGIEAVGGLVDKT----ENPEK-NFPKGIIIAAIVISIGYSLAIF 264 (496)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHhc----cCCCc-cccHHHHHHHHHHHHHHHHHHH
Confidence 356677788899999999999999999 66754 3448999999888999987644
No 47
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=97.93 E-value=0.0031 Score=64.90 Aligned_cols=343 Identities=13% Similarity=0.087 Sum_probs=169.8
Q ss_pred CCCchhHHHHHHHhhhhhhhh-chHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh-
Q 043392 76 RNGNAYYSAFHTLSSGIGVQA-LVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG- 153 (496)
Q Consensus 76 ~~~s~~~a~~~l~~~~iG~Gi-L~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG- 153 (496)
|.-+.++--+.-+...||+|. |+--.+.+..|=- -++...+.|++...=+..|.|....++ ...++.+.+++.+|
T Consensus 13 rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~~p--~~gSF~~~a~~~lG~ 89 (462)
T COG1113 13 RGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVANP--VSGSFSDYARKYLGP 89 (462)
T ss_pred hhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCcHHHHHHHHhcc
Confidence 344567777888899999996 4666777777753 344456778888888888888754332 34699999999999
Q ss_pred --hHHHHHH------HHHhhHHHHHHHHhhcCCCcccccccccchhhhhhHHHH--HHhhcCCCCchhhH-HHHHHHHHH
Q 043392 154 --GTCVILV------MIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAA--VVLAQLPNLNSIAG-VSLIGAITA 222 (496)
Q Consensus 154 --G~~i~y~------i~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~--~pl~~l~~l~~L~~-~S~~~~~~~ 222 (496)
|....+. +.+..-+..+... ...+- .+...+.|.++..++. +-+.-.|....+.+ ++++=++.+
T Consensus 90 ~Agf~tgW~YW~~wv~v~~ae~tAi~~y-~~~Wf----P~vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlIKV~aI 164 (462)
T COG1113 90 WAGFLTGWTYWFFWVLVGIAELTAIGIY-LQFWF----PDVPQWVFALAAVVLLLAVNLISVKVFGELEFWFALIKVAAI 164 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhc----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444322 1111111111111 11000 1111233333333222 23445677777664 333322222
Q ss_pred HHHHH--hhheeeeeccCCCCcccCc-c-ccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcchh
Q 043392 223 VSYCT--IIWVVSVIKDRPVGVSYEP-V-KEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRG 298 (496)
Q Consensus 223 ~~~~~--ii~~~~i~~g~~~~~~~~~-~-~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~ 298 (496)
+...+ +.+......+.......+. + .+.-.++.+.+++.++-+.+|||+|.-.+=--..|- |+|++ .+.|+
T Consensus 165 i~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et----~dP~k-~ipkA 239 (462)
T COG1113 165 IAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEA----KDPEK-AIPKA 239 (462)
T ss_pred HHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhh----cChhh-HHHHH
Confidence 21111 1111111111111111110 0 112235567899999999999999988877777888 66754 23344
Q ss_pred hhhH-----HHHHHHHHHhhhhhhhhcccCccccccccccCCCCCCChhhhhhhccCCCchhHHHHHHHHHHHHHHhhhh
Q 043392 299 VKFA-----YLIIAMCLFPLAIGGYSAYGNLANDIYDAYCQMPGNEGMFDALHKYHNHDTSKVLLGLTSLFVVISSLSSF 373 (496)
Q Consensus 299 v~~s-----~~i~~~~Y~~~g~~GY~~fG~~~~~~~~~i~~~~~~~~il~~~~~~~g~~~~~~l~~ia~~~~~~~~l~sy 373 (496)
+..- ..-+..+...+.+.-+-.++++ - +-..+.|... |.+ +...+.|..++.+.++++
T Consensus 240 in~V~~RI~iFYvgsl~vi~~l~PW~~~~~~----------~---SPFV~~f~~i-Gi~---~Aa~i~N~VVLtAa~S~~ 302 (462)
T COG1113 240 INSVIWRILIFYVGSLFVILSLYPWNQIGED----------G---SPFVTVFSLI-GIP---FAAGIMNFVVLTAALSAL 302 (462)
T ss_pred HhhhhHHHHHHHHHHHHHHheeccccccCCC----------C---CcHHHHHHHc-CCc---ccccceeEEEeechhhcc
Confidence 4332 2223333344455444444441 1 2333333222 211 111223333333333333
Q ss_pred ccccchhHHHHHHhhhccC-CC------CCc-chhHHHHHHHHHHHHHHHHHhCcChHHHHHHHhhhHh---hhhhhHhH
Q 043392 374 QIFAMPVFDNLEFKYTSKY-NK------PCP-WWLRSGIRVFFGSVEFFISAALPFLRNLAALIGGIAL---PITLAYPC 442 (496)
Q Consensus 374 pl~~~p~~~~~e~~~~~~~-~~------~~~-~~~r~~~r~~~~~~~~~iA~~iP~~~~v~~lvGa~~~---~l~filP~ 442 (496)
---.+..-+.+..+-.+.+ ++ +.. .+.-+....+..+++.++....| +.++.++=+.++ .....+=.
T Consensus 303 NSglystsRmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~ 380 (462)
T COG1113 303 NSGLYSTSRMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMIL 380 (462)
T ss_pred cccccccchHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHH
Confidence 1112233333333221110 00 001 23445666667777888888889 555555554443 33344556
Q ss_pred HHHHHHhC
Q 043392 443 FMWIHIRK 450 (496)
Q Consensus 443 ll~lk~~~ 450 (496)
+.|+|.||
T Consensus 381 ~s~l~~rk 388 (462)
T COG1113 381 LSQLKLRK 388 (462)
T ss_pred HHHHHHHh
Confidence 78888877
No 48
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=97.80 E-value=0.037 Score=58.39 Aligned_cols=229 Identities=14% Similarity=0.116 Sum_probs=134.1
Q ss_pred cCCCchhHHHHHHHhhhhhhhhc-hHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh
Q 043392 75 SRNGNAYYSAFHTLSSGIGVQAL-VLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG 153 (496)
+|+-..++-.+.-+...||+|.+ +.-.+++++|=...++..+++|.+.+..+.-|.|.....+. .-+|...+.+..+
T Consensus 43 kR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~--sGsF~~ya~rfvd 120 (541)
T COG0833 43 KRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPV--SGSFSTYATRFVD 120 (541)
T ss_pred hhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCchhhhhhhhcC
Confidence 34555678888889999999974 78899999999988888899999999999999998654331 2357777777766
Q ss_pred ---hHHHHHHHHHhhHHHHHHHHh-hcC-CCcccccccccchhhhhhHHHHHHhh--cCCCCchhhH-HHHHHHHHHHHH
Q 043392 154 ---GTCVILVMIGGGTLKTFFEIV-CGA-SETCNVTRLTTVEWYLVFICAAVVLA--QLPNLNSIAG-VSLIGAITAVSY 225 (496)
Q Consensus 154 ---G~~i~y~i~~g~~l~~~~~~~-~~~-~~~~~~~~l~~~~~~ii~~~~~~pl~--~l~~l~~L~~-~S~~~~~~~~~~ 225 (496)
|..+++.-...-...-=.+.. +.. .+...+.......|+.++.++++.+. -.|-...-.+ +|.+=+++++.+
T Consensus 121 pa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~F 200 (541)
T COG0833 121 PAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGF 200 (541)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHH
Confidence 565554433322111101100 000 00000112345778888777665544 4566666554 344433332222
Q ss_pred HHhh--heeeeeccCCC-CcccCccc-cccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcchhhhh
Q 043392 226 CTII--WVVSVIKDRPV-GVSYEPVK-EISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVKF 301 (496)
Q Consensus 226 ~~ii--~~~~i~~g~~~-~~~~~~~~-~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v~~ 301 (496)
.++. +..+...++.+ +.+|- . +....+.+.++...+-+..|||+|.-++---..|- ++|++ .+-|+++-
T Consensus 201 ii~gii~~~Gg~~~~~~ig~~yw--~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs----~nP~K-~iPkAik~ 273 (541)
T COG0833 201 IILGIIIICGGGPTHGYIGFNYW--HDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGES----ENPRK-SIPKAIKQ 273 (541)
T ss_pred HHHHHHHhcCCCCCCCCcceeee--cCCCCCCcchHHHHHHHhhheeeeeceeeeeeeeccc----CCchh-hhHHHHHH
Confidence 2211 11111111111 12221 1 12234457788889999999999988876666677 56653 23377776
Q ss_pred HHHHHHHHHHh
Q 043392 302 AYLIIAMCLFP 312 (496)
Q Consensus 302 s~~i~~~~Y~~ 312 (496)
.+.=+.++|+.
T Consensus 274 vfwRIl~FYi~ 284 (541)
T COG0833 274 VFWRILLFYIL 284 (541)
T ss_pred HHHHHHHHHHH
Confidence 66666666655
No 49
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=97.65 E-value=0.031 Score=60.05 Aligned_cols=50 Identities=10% Similarity=-0.041 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcchhhhhHHHHHHHHHHhhh
Q 043392 260 LNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVKFAYLIIAMCLFPLA 314 (496)
Q Consensus 260 ~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v~~s~~i~~~~Y~~~g 314 (496)
...+..++|+|.|-......-+|+ |+|+| ..-|++..+..++.++|....
T Consensus 197 ~~~~~~~~faf~G~E~~a~~a~E~----knP~r-~~PrAi~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 197 LVVFVAFIGAYMGVEASASHINEL----ENPGR-DYPLAMILLMIAAICLDAIGG 246 (507)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHc----cCCcc-cccHHHHHHHHHHHHHHHHHH
Confidence 344445689999999999999999 67754 233888888888888887543
No 50
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=97.64 E-value=0.13 Score=54.86 Aligned_cols=62 Identities=21% Similarity=0.107 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcchhhhhHHHHHHHHHHhhhhhhhhcccC
Q 043392 257 FSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVKFAYLIIAMCLFPLAIGGYSAYGN 323 (496)
Q Consensus 257 ~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v~~s~~i~~~~Y~~~g~~GY~~fG~ 323 (496)
..+..+.....|+|.|-.....+-+|+ |+|+| ..-|++..+..+..++|..+-+......++
T Consensus 213 ~~~~~~~~~~~~~f~G~e~~~~~aeE~----knP~r-~iPrai~~s~~i~~~~~~~~~~~~~~~~~~ 274 (475)
T TIGR03428 213 GAFLVSGLMAAYVMVGFGSAGELSEET----KNPRR-VAPRTILTALSVSALGGGLMILGALMAAPS 274 (475)
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHh----cCcch-hhhHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 345556667789999999999999999 67754 234888888777766555544433333343
No 51
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=97.43 E-value=0.0043 Score=66.14 Aligned_cols=228 Identities=14% Similarity=0.084 Sum_probs=119.4
Q ss_pred Hhhhhhhhhc-hHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh---hHHHHHHHHH
Q 043392 88 LSSGIGVQAL-VLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG---GTCVILVMIG 163 (496)
Q Consensus 88 ~~~~iG~GiL-~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG---G~~i~y~i~~ 163 (496)
+..++|+|++ +.+.+..+.|.....+..++.+++...++.-+.|...+.+ +.-.+...+++.+| |..+++....
T Consensus 7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p--~~Gg~y~y~~~~lg~~~Gf~~gw~y~~ 84 (478)
T PF00324_consen 7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFP--SAGGFYAYASRGLGPALGFAAGWAYWL 84 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhc--cccchhhhhhhccCCcCCceeeHHHHH
Confidence 3456777654 5667888999976777788888888888888888765432 23455666778888 5544444222
Q ss_pred hhHHHHHHH-----HhhcCCCcccccccccchh----hhhhHHHHHHhh--cCCCCchhhHHHHHHHHHHHHHHHhhh-e
Q 043392 164 GGTLKTFFE-----IVCGASETCNVTRLTTVEW----YLVFICAAVVLA--QLPNLNSIAGVSLIGAITAVSYCTIIW-V 231 (496)
Q Consensus 164 g~~l~~~~~-----~~~~~~~~~~~~~l~~~~~----~ii~~~~~~pl~--~l~~l~~L~~~S~~~~~~~~~~~~ii~-~ 231 (496)
......-.+ .+....+. ..+..+...| ..++.+++..+. -.|...+....-..-.+..+..+.+.. +
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~ii~~~i 163 (478)
T PF00324_consen 85 SYIAAIAAEATAAGSFLQFWGY-FPGLPSTWVWGILIAIIFILLITLLNLFGVRVSGKIEFILTIIKLIALIAFIIVGVI 163 (478)
T ss_pred HHHHHHHhhhhhhhhhhccccc-cccccccccccchhhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhhhhccc
Confidence 222211111 01110000 0011112222 223332222222 234444433332211111121111111 1
Q ss_pred eeeeccCCCCc-cc-Cc------ccc---ccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcchhhh
Q 043392 232 VSVIKDRPVGV-SY-EP------VKE---ISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVK 300 (496)
Q Consensus 232 ~~i~~g~~~~~-~~-~~------~~~---~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v~ 300 (496)
.....+.+.+. .+ ++ +++ .....++.++..++...+++|.|-..+...-+|. |+|+| ++.|++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~----k~P~k-~IPra~~ 238 (478)
T PF00324_consen 164 ILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEA----KNPRK-TIPRATL 238 (478)
T ss_pred ccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccC----CCchh-hhhhHhh
Confidence 11112111111 00 00 000 0112236788999999999999999999999999 67763 4568888
Q ss_pred hHHHHHHHHHHhhhhhhhhcccC
Q 043392 301 FAYLIIAMCLFPLAIGGYSAYGN 323 (496)
Q Consensus 301 ~s~~i~~~~Y~~~g~~GY~~fG~ 323 (496)
.++....++|.......-...+.
T Consensus 239 ~~~~~~~v~y~~~~~~~~~~~~~ 261 (478)
T PF00324_consen 239 LSVLRIGVFYVLTSYALTLAVPY 261 (478)
T ss_pred hhhhhhhhhhhhhhhhcccccCc
Confidence 89999999998877655455554
No 52
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.34 E-value=0.009 Score=64.31 Aligned_cols=236 Identities=15% Similarity=0.114 Sum_probs=126.1
Q ss_pred cCCCchhHHHHHHHhhhhhhhhc-hHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh
Q 043392 75 SRNGNAYYSAFHTLSSGIGVQAL-VLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG 153 (496)
+|+-+.++-.+.-+..+||+|++ ....+.++.|=..-++..++++...+.+..-+.|..-+.+.. .-++..-+.+.+|
T Consensus 29 kR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~-aGs~~~ya~~~i~ 107 (554)
T KOG1286|consen 29 KRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVS-AGSFYTYAYRFVG 107 (554)
T ss_pred hccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccc-cccceeeeeeeeC
Confidence 35566666667777889999986 457778888888777777888888888888888875544321 0112222223333
Q ss_pred ---hHHHH------HHHHHhhHHHHH---HHHhhcCCCc-ccccccccchhhhhhHH--HHHHhhcCCCCchhhHHHHHH
Q 043392 154 ---GTCVI------LVMIGGGTLKTF---FEIVCGASET-CNVTRLTTVEWYLVFIC--AAVVLAQLPNLNSIAGVSLIG 218 (496)
Q Consensus 154 ---G~~i~------y~i~~g~~l~~~---~~~~~~~~~~-~~~~~l~~~~~~ii~~~--~~~pl~~l~~l~~L~~~S~~~ 218 (496)
|+.++ |++......+.. ++...+.... -.....+...|..++.+ +++.+...+-+...++.+.+.
T Consensus 108 e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~~~~~ 187 (554)
T KOG1286|consen 108 ESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFSLAFN 187 (554)
T ss_pred cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceeehHHHH
Confidence 33333 333332222221 1111100000 00012223445544332 223344455544554444443
Q ss_pred HHHHHHHHHhhheeeeeccCCCCc-ccCc---ccc-c-cchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcc
Q 043392 219 AITAVSYCTIIWVVSVIKDRPVGV-SYEP---VKE-I-SDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSR 292 (496)
Q Consensus 219 ~~~~~~~~~ii~~~~i~~g~~~~~-~~~~---~~~-~-~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~ 292 (496)
-+++++.+++..+..+..+.+.+. +|.. +++ . -....+.++...+-+..|+|.|--.+-.--+|- |+|++
T Consensus 188 kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~----kNP~k 263 (554)
T KOG1286|consen 188 KILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEA----KNPRK 263 (554)
T ss_pred HHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhc----cCCcc
Confidence 443333333222221111111111 1211 111 1 111226688899999999999988888888888 67753
Q ss_pred cCcchhhhhHHHHHHHHHHhhhhh
Q 043392 293 IPMWRGVKFAYLIIAMCLFPLAIG 316 (496)
Q Consensus 293 ~~m~~~v~~s~~i~~~~Y~~~g~~ 316 (496)
..-++++.++..+.++|....+.
T Consensus 264 -~IP~ai~~s~~ri~~~Yi~~~~~ 286 (554)
T KOG1286|consen 264 -AIPKAIKQSLLRILLFYILSSIV 286 (554)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHH
Confidence 23488888999999999987663
No 53
>PRK11375 allantoin permease; Provisional
Probab=97.19 E-value=0.27 Score=52.50 Aligned_cols=65 Identities=9% Similarity=-0.051 Sum_probs=33.6
Q ss_pred hhHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh
Q 043392 80 AYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 80 ~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG 153 (496)
|....+|+.+..++.|.++ ..+++..+++..++..++...-+.+..+... +...++.-++|..||
T Consensus 36 W~g~~~~i~~~~~~g~~l~-----~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~----~~Gl~~~v~sR~sFG 100 (484)
T PRK11375 36 WMGSVHNVPNYVMVGGFFI-----LGLSTFSIMLAIILSAFFIAAVMVLNGAAGS----KYGVPFAMILRASYG 100 (484)
T ss_pred HHHHhccHHHHHHHHHHHH-----ccchHHHHHHHHHHHHHHHHHHHHHhccccc----ccCCChhHhHHHHHc
Confidence 4445555555444545553 2344455555544444444333333333322 124688999999999
No 54
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=97.11 E-value=0.46 Score=50.13 Aligned_cols=62 Identities=15% Similarity=0.007 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHH-HhhccccchHhHhhcCCCCCCCCcccCcchhhhhHHHHHHHHHHhhhhhhhhc----ccC
Q 043392 256 IFSILNSLGIIA-FAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVKFAYLIIAMCLFPLAIGGYSA----YGN 323 (496)
Q Consensus 256 ~~~~~~a~gi~~-faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v~~s~~i~~~~Y~~~g~~GY~~----fG~ 323 (496)
...+..++...+ +.-..-.+.+...+.+| ++++.. +....++....+....+|+.+-.. +|+
T Consensus 206 ~~~f~~~~~~~~g~~~s~~~~~~DysRy~~----~~~~~~--~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~ 272 (442)
T TIGR00800 206 AWAFLYALSLVIGSFATWATNAPDFTRFGK----SKKTAI--WGQFLALPGGFTLTCFFGILGAAAAYAAYGE 272 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchhhhhhcC----CccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 445555554422 22234456788888883 333322 445556666666666677666554 776
No 55
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=97.07 E-value=0.0008 Score=61.38 Aligned_cols=51 Identities=25% Similarity=0.400 Sum_probs=44.8
Q ss_pred HHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhc
Q 043392 82 YSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQL 132 (496)
Q Consensus 82 ~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~ 132 (496)
-...-+.|-++|+|.|+||.||+..||+.++.+|.+.++++..+.-.+++.
T Consensus 16 vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviea 66 (319)
T KOG3832|consen 16 VGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEA 66 (319)
T ss_pred hhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566788999999999999999999999999999999999988777773
No 56
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=95.85 E-value=2 Score=42.84 Aligned_cols=69 Identities=13% Similarity=0.104 Sum_probs=48.1
Q ss_pred hHHHHHHHhhhhhhhhchHHH---HHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh
Q 043392 81 YYSAFHTLSSGIGVQALVLPL---AFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 81 ~~a~~~l~~~~iG~GiL~LP~---af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG 153 (496)
.+-.|-.+.+++|+|.=+==- =|..-|+. |+.-.++.+++-..++.++.+...+. +..+|+|.-++.+|
T Consensus 6 ~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f---~a~~y~~~~~~v~~ 77 (349)
T COG3949 6 MRWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKF---NATSYREILKYVSG 77 (349)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHh---cccchHHHHHHHhh
Confidence 345566677889988644211 14455665 67777778888888888888876532 34689999999999
No 57
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=95.64 E-value=3.8 Score=43.63 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcchhhhhHHHHHHH
Q 043392 255 TIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVKFAYLIIAM 308 (496)
Q Consensus 255 ~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v~~s~~i~~~ 308 (496)
+-+.+..++-.-+..+.|--.-..+.+|- |++++.- -|++..+..+..+
T Consensus 250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~----~nAsk~a-PrgIi~s~~i~~i 298 (550)
T KOG1289|consen 250 NGWAFILGFFNPAWTMSGYDAAAHMAEET----KNASKAA-PRGIISSIAIGFI 298 (550)
T ss_pred chHHHHHhhccceeEEeccCchHHHHHHh----cchhhhc-cHHHHHHHHHHHH
Confidence 34555666666667777777778888888 4554322 1555554444443
No 58
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=95.54 E-value=3.6 Score=42.63 Aligned_cols=210 Identities=13% Similarity=0.154 Sum_probs=95.2
Q ss_pred hhHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh--hH--
Q 043392 80 AYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG--GT-- 155 (496)
Q Consensus 80 ~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG--G~-- 155 (496)
|....+|+.+-..|+.... +++..+++..++..++...-.-+....-. +...++.-++|..|| |.
T Consensus 7 W~~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~G~----~~Gl~~~v~sR~~FG~~Gs~~ 75 (386)
T TIGR02358 7 WFGAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVIGA----DTGLSAMGSLKLSLGSKGSVL 75 (386)
T ss_pred HHHHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccCcCHHHHHHHHHccchhhH
Confidence 4566667766666643211 55655555444444443333333333322 123678999999999 21
Q ss_pred ------------HHHHHHHHhhHHHHHHHHhhcCCCcccccccccchhhhhhHHHHHHhhcCCCCchhhHHHHHHHHHHH
Q 043392 156 ------------CVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQLPNLNSIAGVSLIGAITAV 223 (496)
Q Consensus 156 ------------~i~y~i~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~~l~~l~~L~~~S~~~~~~~~ 223 (496)
-..-...+|+.++.+.+...+. .+...+++++.++..+.+. .-.+.++++..++.....
T Consensus 76 ~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~--------~~~~~~~~i~~~l~~~~~~-~G~~~i~~~~~~~~~~~~ 146 (386)
T TIGR02358 76 PSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGE--------ESPMLWILIVGILVTLWLL-SGPLAFVWLNNWSVWLLL 146 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 1222344567777665432220 1122344444444444443 334555555555544443
Q ss_pred HHHHhhheeeeeccCCCCcccCccccccchhhHHHHHHHHHHHH-HhhccccchHhHhhcCCCCCCCCcccCcchhhhhH
Q 043392 224 SYCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIA-FAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVKFA 302 (496)
Q Consensus 224 ~~~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~-faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v~~s 302 (496)
..+....+....+..... ...+ + . + ..+..++...+ +.-......+...+.. |+|++ .......+
T Consensus 147 i~~~~~~~~~~~~~~~~~-~~~~-~-~-~----~s~~~~~~~~~~~~~swa~~~~DysRy~----k~~~~--~~~~~~~G 212 (386)
T TIGR02358 147 IATLWLLVVVFSKADLSE-LWNR-A-G-D----MSFAVAVELVIAMPLSWLPLIADYTRFA----RNPRH--VFLGTVLG 212 (386)
T ss_pred HHHHHHHHHHHhccchhh-hcCC-C-C-C----ccHHHHHHHHHHHHHHHHHHccchhhhc----CCCcc--eehHHHHH
Confidence 333332222222211111 1110 0 1 1 11122222111 0011122345666665 33432 23455556
Q ss_pred HHHHHHHHHhhhhhhhhcccC
Q 043392 303 YLIIAMCLFPLAIGGYSAYGN 323 (496)
Q Consensus 303 ~~i~~~~Y~~~g~~GY~~fG~ 323 (496)
..+...+...+|...-.+.++
T Consensus 213 ~~i~~~~~~~~G~~~~~a~~~ 233 (386)
T TIGR02358 213 YFIGSCWMYFLGLAVTLATGQ 233 (386)
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 777777777777766666555
No 59
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=94.39 E-value=8.3 Score=41.00 Aligned_cols=76 Identities=9% Similarity=0.033 Sum_probs=42.6
Q ss_pred cCCCchhHHHHHHHhhhhhh-hhchHHHHHHhcChhHHHHHHH--HHHHHHH-HHHHHHHhccccccCCccCcHHHHHHH
Q 043392 75 SRNGNAYYSAFHTLSSGIGV-QALVLPLAFTTLGWTWGIICLL--LVFIWQL-YTLWLLIQLHESESGTRYSRYLRLSMA 150 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~giill~--~~~~l~~-~t~~lL~~~~~~~~~~~~~sy~~l~~~ 150 (496)
.|+-+++...+.+..+.+|+ ..++.|--..+.|+.+...... ..+.+.. +-...+.+..++ .+..|..|.-++
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~T~~e~l~~ 115 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRK---YNAITINDVLKA 115 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCccHHHHHHH
Confidence 46677888888888888874 4567787777778753221111 1111111 011112222221 235788898888
Q ss_pred Hhh
Q 043392 151 AFG 153 (496)
Q Consensus 151 ~fG 153 (496)
-||
T Consensus 116 Ryg 118 (471)
T TIGR02119 116 RYN 118 (471)
T ss_pred HcC
Confidence 888
No 60
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=94.34 E-value=1.1 Score=46.53 Aligned_cols=75 Identities=12% Similarity=-0.009 Sum_probs=39.9
Q ss_pred cCCCchhHHHHHHHhhhhhh-hhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh
Q 043392 75 SRNGNAYYSAFHTLSSGIGV-QALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG 153 (496)
.|+-+++...+.+..+.+|+ ..++.|-...+.|+.... ..+..........+++.+-.++ .+..|..|.-++-||
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~-~~~~~~~~~~~~~~~~~~~~r~---~~~~T~~e~~~~Ryg 80 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLW-YAIGYAIGFLLFALFFAPRLRR---SGAVTIPEYLEKRYG 80 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGH-HHHHHHHHHHHHHHHTHHHHHH---TT--SHHHHHHHHT-
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceee-eccccchhHHHHHHHHHHhhcc---cchhhhhhhhhhhcC
Confidence 35667788888888888875 577888888888886332 2222222222333333333221 235677777777777
No 61
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=94.19 E-value=9.3 Score=40.78 Aligned_cols=76 Identities=13% Similarity=0.099 Sum_probs=41.0
Q ss_pred cCCCchhHHHHHHHhhhhhh-hhchHHHHHHhcChhHHHHHH--HHHHHHHH-HHHHHHHhccccccCCccCcHHHHHHH
Q 043392 75 SRNGNAYYSAFHTLSSGIGV-QALVLPLAFTTLGWTWGIICL--LLVFIWQL-YTLWLLIQLHESESGTRYSRYLRLSMA 150 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~giill--~~~~~l~~-~t~~lL~~~~~~~~~~~~~sy~~l~~~ 150 (496)
.|+-+++-..+.+..+.+|+ ..++.|-...+.|+.+....+ .....+.. +-+..+.+..++ .+..|..|.-++
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~---~~~~T~~e~l~~ 116 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARK---YNAVTLNDMLRA 116 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCccHHHHHHH
Confidence 45667777777777776664 677788666666764211111 11111111 112222222222 235789999888
Q ss_pred Hhh
Q 043392 151 AFG 153 (496)
Q Consensus 151 ~fG 153 (496)
-||
T Consensus 117 Ryg 119 (483)
T PRK09442 117 RYQ 119 (483)
T ss_pred HhC
Confidence 888
No 62
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=93.58 E-value=11 Score=39.42 Aligned_cols=55 Identities=15% Similarity=0.030 Sum_probs=41.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHhCcChHHHHHHHhhhHh-hhhhhHhHHHHHHHhCC
Q 043392 397 PWWLRSGIRVFFGSVEFFISAALPFLRNLAALIGGIAL-PITLAYPCFMWIHIRKP 451 (496)
Q Consensus 397 ~~~~r~~~r~~~~~~~~~iA~~iP~~~~v~~lvGa~~~-~l~filP~ll~lk~~~~ 451 (496)
.+.+|...|.+..+.+.++.+.+-+.+.++.+.+.+.+ .+-+..++++.+..+|+
T Consensus 323 ~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 323 LWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 36778888888887766666555599999999999888 77777777766666554
No 63
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=92.82 E-value=14 Score=38.47 Aligned_cols=74 Identities=22% Similarity=0.252 Sum_probs=41.8
Q ss_pred CCCchhHHHHHHHhhhhh-hhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh
Q 043392 76 RNGNAYYSAFHTLSSGIG-VQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 76 ~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG 153 (496)
|+-+++...+.+..+.+| ...++.|-...+.|+... .......+......++..+..++ .+..|..|.-++-||
T Consensus 3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~T~~e~l~~Ryg 77 (407)
T TIGR00813 3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIG-FYELGALVLLIILGWLFVPIFIN---NGAYTMPEYLEKRFG 77 (407)
T ss_pred CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---cCCCchhHHHHHHhC
Confidence 455667677777776666 567788887777786422 21122222222333444443332 235788888888887
No 64
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=92.67 E-value=17 Score=39.06 Aligned_cols=84 Identities=18% Similarity=0.079 Sum_probs=50.2
Q ss_pred CCCCcccccccCCCchhHHHHHHHhhhhh-hhhchHHHHHHhcChhHHHHHHH---HHHHHHHHHHHHHHhccccccCCc
Q 043392 65 PQDAWLPITESRNGNAYYSAFHTLSSGIG-VQALVLPLAFTTLGWTWGIICLL---LVFIWQLYTLWLLIQLHESESGTR 140 (496)
Q Consensus 65 ~~~~~~~~~~~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~giill~---~~~~l~~~t~~lL~~~~~~~~~~~ 140 (496)
..|||... .|+-+.+-..+...-+.++ .-.+++|-...+.|+....+.+. ...+...+-...+.+..+ ..+
T Consensus 29 ~~~dy~~~--gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~---~~~ 103 (493)
T COG0591 29 SLEDYFLG--GRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAK---ARG 103 (493)
T ss_pred chHHHhcc--CCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccC
Confidence 34444332 3444444556666666666 88999999999999863333322 333333345555555543 234
Q ss_pred cCcHHHHHHHHhh
Q 043392 141 YSRYLRLSMAAFG 153 (496)
Q Consensus 141 ~~sy~~l~~~~fG 153 (496)
..|..|.-++-||
T Consensus 104 ~~T~~d~l~~Rf~ 116 (493)
T COG0591 104 ATTIPDFLEARFG 116 (493)
T ss_pred CccHHHHHHHHcC
Confidence 6788888888888
No 65
>PRK11017 codB cytosine permease; Provisional
Probab=89.14 E-value=31 Score=35.92 Aligned_cols=13 Identities=23% Similarity=0.092 Sum_probs=11.2
Q ss_pred cCcHHHHHHHHhh
Q 043392 141 YSRYLRLSMAAFG 153 (496)
Q Consensus 141 ~~sy~~l~~~~fG 153 (496)
..++.-++|..||
T Consensus 70 G~~~~v~sR~~FG 82 (404)
T PRK11017 70 GLSTHLLARFSFG 82 (404)
T ss_pred CcCHHHHHHHHhc
Confidence 3688999999999
No 66
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=87.40 E-value=43 Score=35.56 Aligned_cols=96 Identities=20% Similarity=0.189 Sum_probs=48.9
Q ss_pred ccCcHHHHHHHHhh--hH-----------HHHH---HHHHhhHHHHHHHHhhcCC---Cc-ccccccccchhhhhhHHHH
Q 043392 140 RYSRYLRLSMAAFG--GT-----------CVIL---VMIGGGTLKTFFEIVCGAS---ET-CNVTRLTTVEWYLVFICAA 199 (496)
Q Consensus 140 ~~~sy~~l~~~~fG--G~-----------~i~y---~i~~g~~l~~~~~~~~~~~---~~-~~~~~l~~~~~~ii~~~~~ 199 (496)
..-.|..+.|..|| |. |.=| .-.+|..++.++....++. +. -....++..+|+-.+..-+
T Consensus 101 ~gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~ 180 (497)
T COG1953 101 YGIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWV 180 (497)
T ss_pred cCCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHH
Confidence 35789999999999 11 2212 2345666666665544421 00 0011234444443333211
Q ss_pred -HHhhcCCCCchhhHHHHHHHHHHHHHHHhhheeeee
Q 043392 200 -VVLAQLPNLNSIAGVSLIGAITAVSYCTIIWVVSVI 235 (496)
Q Consensus 200 -~pl~~l~~l~~L~~~S~~~~~~~~~~~~ii~~~~i~ 235 (496)
-.+...+-+++++++-..+......++...+++.+.
T Consensus 181 l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~ 217 (497)
T COG1953 181 LQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALV 217 (497)
T ss_pred HHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 223455667777776666665555555544444433
No 67
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=82.46 E-value=54 Score=33.55 Aligned_cols=70 Identities=16% Similarity=0.211 Sum_probs=50.5
Q ss_pred CchhHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHH----HHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh
Q 043392 78 GNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLL----VFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 78 ~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~----~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG 153 (496)
.+.+...-|=..++-|+|-+.=|..-.+-||+++.+.+++ .|.+..|....+. -|+.| +|.+|++++..|
T Consensus 52 ~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~S---vR~~G---~Si~~i~~~~lG 125 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMAS---VRHKG---KSIGEIAGKYLG 125 (376)
T ss_pred CchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhh---hcCCC---ccHHHHHHHHHH
Confidence 4446677777888999999999999999999988877654 3334444333222 22224 699999999999
No 68
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=79.51 E-value=86 Score=32.91 Aligned_cols=40 Identities=13% Similarity=0.292 Sum_probs=31.4
Q ss_pred CchhHHHHHHHhhhhhhh-hchHHHHHHhcChhHHHHHHHHH
Q 043392 78 GNAYYSAFHTLSSGIGVQ-ALVLPLAFTTLGWTWGIICLLLV 118 (496)
Q Consensus 78 ~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~giill~~~ 118 (496)
-|-+++.+..+.+.+|+| +++.|.|.+.+| ..+++.+-+.
T Consensus 47 iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~ 87 (425)
T TIGR00835 47 VSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVT 87 (425)
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHH
Confidence 567999999999999998 999999987776 4454444333
No 69
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=76.76 E-value=1.1e+02 Score=32.66 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=23.8
Q ss_pred cCCCchhHHHHHHHhhhhhh-hhchHHHHHHhcChh
Q 043392 75 SRNGNAYYSAFHTLSSGIGV-QALVLPLAFTTLGWT 109 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~ 109 (496)
.|+-+++-..+.+..+.+++ -.++.|-...+.|+.
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~ 70 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLS 70 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHH
Confidence 45667777777777776664 466788666667875
No 70
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=76.61 E-value=15 Score=38.37 Aligned_cols=138 Identities=16% Similarity=0.094 Sum_probs=83.6
Q ss_pred hhhHHHHHHH-HHHhhhhhhhhcccCccccccccccCCCCCCChhhhhhhccCCCchhHHHHHHHHHHHHHHhhhhcccc
Q 043392 299 VKFAYLIIAM-CLFPLAIGGYSAYGNLANDIYDAYCQMPGNEGMFDALHKYHNHDTSKVLLGLTSLFVVISSLSSFQIFA 377 (496)
Q Consensus 299 v~~s~~i~~~-~Y~~~g~~GY~~fG~~~~~~~~~i~~~~~~~~il~~~~~~~g~~~~~~l~~ia~~~~~~~~l~sypl~~ 377 (496)
+..+..+... -..+....++..|+. +. .+.+ +|+++++. ....+ ..+......+...+++.+.
T Consensus 227 ~~k~~~~~~~~~~vlyi~~~~~~~~~----~~---~~~~--~~il~~~~------~~~~~-l~~~~~~~~~~~~~~~~~~ 290 (415)
T COG0814 227 VRKAILIGSLIALVLYILVGFFVFGC----FG---SLVF--GNILAAKE------QNISL-LSALAGVINSPILSIALNI 290 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cC---cccH--HHHHHccC------chHHH-HHHHHHhhcchHHHHHHHH
Confidence 4445444444 455678889999988 11 1333 46777652 22222 2344455556668888888
Q ss_pred chhHHHHHHhhh----ccC------CCCCcchhHHHHHHHHHHHHHHHHHhCcC-hHHHHHHHhhhHh-hhhhhHhHHHH
Q 043392 378 MPVFDNLEFKYT----SKY------NKPCPWWLRSGIRVFFGSVEFFISAALPF-LRNLAALIGGIAL-PITLAYPCFMW 445 (496)
Q Consensus 378 ~p~~~~~e~~~~----~~~------~~~~~~~~r~~~r~~~~~~~~~iA~~iP~-~~~v~~lvGa~~~-~l~filP~ll~ 445 (496)
++.+...-..+. .++ ++...+..|..........+.+.+...|. +....+..|++.. ..+-++|.+++
T Consensus 291 f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~ 370 (415)
T COG0814 291 FALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLF 370 (415)
T ss_pred HHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence 888866544321 111 11112233445555555667777777774 7778888888888 99999999999
Q ss_pred HHHhCCC
Q 043392 446 IHIRKPT 452 (496)
Q Consensus 446 lk~~~~~ 452 (496)
++-++..
T Consensus 371 ~~p~~~~ 377 (415)
T COG0814 371 IKPRKLI 377 (415)
T ss_pred HHHHHhc
Confidence 8876543
No 71
>PRK15015 carbon starvation protein A; Provisional
Probab=73.41 E-value=47 Score=36.53 Aligned_cols=69 Identities=19% Similarity=0.199 Sum_probs=47.6
Q ss_pred hHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHh--ccccccCCccCcHHHHHHHHhh
Q 043392 81 YYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQ--LHESESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 81 ~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~--~~~~~~~~~~~sy~~l~~~~fG 153 (496)
+--+-|=..++-|+|-+-=|.--.+.||+++.+.+++-.++.- ..|=..- .+-|+.| +|.+|++++..|
T Consensus 86 ~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~G-aVhD~~~L~~S~R~~G---rSig~ia~~~iG 156 (701)
T PRK15015 86 KVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAG-AVQDFMVLFVSTRRDG---RSLGELVKEEMG 156 (701)
T ss_pred cchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeec-hhhhhhheeeeecCCC---ccHHHHHHHHhh
Confidence 3455566788999999999999999999999987765333221 1111111 1233324 699999999999
No 72
>PRK12488 acetate permease; Provisional
Probab=71.19 E-value=1.6e+02 Score=32.02 Aligned_cols=35 Identities=9% Similarity=0.033 Sum_probs=26.1
Q ss_pred cCCCchhHHHHHHHhhhhhhh-hchHHHHHHhcChh
Q 043392 75 SRNGNAYYSAFHTLSSGIGVQ-ALVLPLAFTTLGWT 109 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~ 109 (496)
.|+-+++...+.+..+.++++ .++.|-...+.|+-
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~ 101 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD 101 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 456777777888888877754 58888877778875
No 73
>PRK10484 putative transporter; Provisional
Probab=71.07 E-value=1.6e+02 Score=31.83 Aligned_cols=75 Identities=9% Similarity=-0.075 Sum_probs=39.4
Q ss_pred cCCCchhHHHHHHHhhhhh-hhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh
Q 043392 75 SRNGNAYYSAFHTLSSGIG-VQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG 153 (496)
.|+-+++-..+.+..+.++ ...++.|-...+.|+..... .....+......+++..-..| .+..|..|.-++-||
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~-~~~~~~~~~~~~~~~~p~~~r---~~~~T~~e~l~~Ryg 112 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAW-EVTAAIALIILALIFLPRYLK---SGITTIPDFLEERYD 112 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHH-HHHHHHHHHHHHHHHHHHHHh---cCCccHHHHHHHhcC
Confidence 4667777777777777665 44667776666677642111 111111111122333322221 235677888778787
No 74
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=70.84 E-value=1.5e+02 Score=31.54 Aligned_cols=103 Identities=20% Similarity=0.343 Sum_probs=48.8
Q ss_pred cccccC-CCchhHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCC-ccCcHHHHH
Q 043392 71 PITESR-NGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGT-RYSRYLRLS 148 (496)
Q Consensus 71 ~~~~~~-~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~-~~~sy~~l~ 148 (496)
|..++| .=++++-+.-=....++++.--+.-+.-++|+-+-=.. .+++.-|+...+--....++|. -+.++.-+.
T Consensus 48 Pv~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~---~tv~vG~~~~~~f~~lns~~G~~yhIsFpv~s 124 (572)
T KOG2466|consen 48 PVPPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTW---ITVWVGYLFTAIFLVLNSRPGSDYHISFPVLS 124 (572)
T ss_pred cCCcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHH---HHHHHHHHHHHHHHHHccCCCcccccceeeee
Confidence 444443 33555544444444556666666666667776432111 1222222222222211112343 245666677
Q ss_pred HHHhh-------------hHHHHHH---HHHhhHHHHHHHHhhc
Q 043392 149 MAAFG-------------GTCVILV---MIGGGTLKTFFEIVCG 176 (496)
Q Consensus 149 ~~~fG-------------G~~i~y~---i~~g~~l~~~~~~~~~ 176 (496)
|..|| ..|+=|- -++|+..+.++....+
T Consensus 125 R~sFGiygS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~ 168 (572)
T KOG2466|consen 125 RSSFGIYGSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFK 168 (572)
T ss_pred eeehhhhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhh
Confidence 77777 2333332 2567777776665544
No 75
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=70.18 E-value=5.6 Score=41.80 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=21.8
Q ss_pred cchHhHhhcCCCCCCCCcccCcchhhhhHHHHHHHHHHhhhhhhhhc
Q 043392 274 NLVLEVQGTMPSTAKKPSRIPMWRGVKFAYLIIAMCLFPLAIGGYSA 320 (496)
Q Consensus 274 ~~v~~I~~~m~~~~k~P~~~~m~~~v~~s~~i~~~~Y~~~g~~GY~~ 320 (496)
.+.+...+.+| +++ +-++....++.........+|+.|-..
T Consensus 219 ~~~~DysRy~~----~~~--~~~~~~~~~~~~~~~~~~~~g~lg~~~ 259 (440)
T PF02133_consen 219 PNASDYSRYAK----SDT--SAWWGFWLGFPGGFIPFVLVGILGAAA 259 (440)
T ss_dssp CCCHHHHTTC------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccHHhhCC----CCC--CcEEEEeehhhhHHHHHHHHHHHHHHH
Confidence 34457778883 222 223555556666666666666655443
No 76
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=69.68 E-value=1.5e+02 Score=31.12 Aligned_cols=45 Identities=18% Similarity=0.210 Sum_probs=31.1
Q ss_pred chhHHHHHHHhhhhhhhhchHHHHHH---hcChhHHHHHHHHHHHHHH
Q 043392 79 NAYYSAFHTLSSGIGVQALVLPLAFT---TLGWTWGIICLLLVFIWQL 123 (496)
Q Consensus 79 s~~~a~~~l~~~~iG~GiL~LP~af~---~~G~~~giill~~~~~l~~ 123 (496)
+.....+.+.....|+|=|=.|-..- ..-|.++.+.+++.++.--
T Consensus 4 ~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP 51 (427)
T PF05525_consen 4 DILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLP 51 (427)
T ss_pred hhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 34566778888899999999997743 2446667776666555433
No 77
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=63.50 E-value=1.9e+02 Score=29.92 Aligned_cols=39 Identities=10% Similarity=0.005 Sum_probs=24.2
Q ss_pred HHHhhhhhhhhchHHHHHH-h--cChhHHHHHHHHHHHHHHH
Q 043392 86 HTLSSGIGVQALVLPLAFT-T--LGWTWGIICLLLVFIWQLY 124 (496)
Q Consensus 86 ~l~~~~iG~GiL~LP~af~-~--~G~~~giill~~~~~l~~~ 124 (496)
.+..-.+|+|.|-.|-... + ..|.++.+..++.++..-.
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpl 44 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPL 44 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 4556679999999997743 2 3345555555555554443
No 78
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=63.01 E-value=2.3e+02 Score=30.80 Aligned_cols=75 Identities=9% Similarity=-0.074 Sum_probs=40.8
Q ss_pred cCCCchhHHHHHHHhhhhh-hhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh
Q 043392 75 SRNGNAYYSAFHTLSSGIG-VQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG 153 (496)
.|+-+++...+.+..+.++ ...++.|-.....|+..-...+ ...+......+++..-.++ .+ ..|-.|.-++=||
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~-g~~~~~~~~~~~~~p~~rr-~~--~~T~~e~l~~Rf~ 106 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLM-GWTGGYVLLALLLAPYLRK-FG--KYTVPDFIGDRYY 106 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHH-CC--CccHHHHHHHHhC
Confidence 4667788888888888775 4577888776667764211111 1111111123344443332 12 4577776666676
No 79
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=62.80 E-value=2.2e+02 Score=30.51 Aligned_cols=35 Identities=20% Similarity=0.176 Sum_probs=25.4
Q ss_pred cCCCchhHHHHHHHhhhhhh-hhchHHHHHHhcChh
Q 043392 75 SRNGNAYYSAFHTLSSGIGV-QALVLPLAFTTLGWT 109 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~ 109 (496)
.|+-+++-..+.+..+.+++ ..++.|-...+.|+-
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~ 74 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGIS 74 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHH
Confidence 45677777777777777764 456788887788875
No 80
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=62.01 E-value=2.1e+02 Score=30.06 Aligned_cols=96 Identities=15% Similarity=0.166 Sum_probs=52.3
Q ss_pred chhHHHHHHHhhhhhhh-hchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhcc--ccccCCccCcHHHHHH----HH
Q 043392 79 NAYYSAFHTLSSGIGVQ-ALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLH--ESESGTRYSRYLRLSM----AA 151 (496)
Q Consensus 79 s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~--~~~~~~~~~sy~~l~~----~~ 151 (496)
|...=++..+.+.||.| +.-.||-..+.|-. ..++.-+++.+..=--.++.|.. ++..+....+|+.+.. +.
T Consensus 10 SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGg-AFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~~~~~~~ 88 (439)
T COG0733 10 SRLGFILAAAGSAVGLGNIWRFPYMAGENGGG-AFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAPKKKWEW 88 (439)
T ss_pred hHHHHHHHHHHHHhcccccccCCeEeeecCcc-hHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhccCccchh
Confidence 33556677778888877 67889887766654 23333333333333334444432 1111223567777763 33
Q ss_pred hh--------hHHHHHHHHHhhHHHHHHHHhh
Q 043392 152 FG--------GTCVILVMIGGGTLKTFFEIVC 175 (496)
Q Consensus 152 fG--------G~~i~y~i~~g~~l~~~~~~~~ 175 (496)
.| ..+.-|.+++|=.+.-++....
T Consensus 89 ~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~t 120 (439)
T COG0733 89 IGWFGVLGGFLILSFYSVIGGWILSYLVKSLT 120 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33 4455677777766666555443
No 81
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=60.59 E-value=2.5e+02 Score=30.33 Aligned_cols=91 Identities=23% Similarity=0.205 Sum_probs=49.8
Q ss_pred chhHHHHHHHhhhhhhh-hchHHHHHH-hcChhH---HHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh
Q 043392 79 NAYYSAFHTLSSGIGVQ-ALVLPLAFT-TLGWTW---GIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 79 s~~~a~~~l~~~~iG~G-iL~LP~af~-~~G~~~---giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG 153 (496)
+..+-++..+...+|.| +.-+||-.. ++|... =.++++++|+=..+.=..+.|..++ |. ...|++++...=|
T Consensus 6 ~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~~--~~-~~~~~~~~p~~~g 82 (523)
T PF00209_consen 6 SKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSRS--GP-IGAWKRLCPIFKG 82 (523)
T ss_dssp -HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TS-HHHS-HHHHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cc-ccccccccccccc
Confidence 34567778888999998 999999855 555432 2223334444444555555655432 22 3446566544333
Q ss_pred ----------hHHHHHHHHHhhHHHHHHH
Q 043392 154 ----------GTCVILVMIGGGTLKTFFE 172 (496)
Q Consensus 154 ----------G~~i~y~i~~g~~l~~~~~ 172 (496)
..++-|.++.+-.+.-++.
T Consensus 83 iG~~~~~~~~~~~~yy~vi~~w~l~Y~~~ 111 (523)
T PF00209_consen 83 IGYAMVLISFLIAIYYSVIVAWALYYFFQ 111 (523)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccc
Confidence 2344455666655554443
No 82
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=59.96 E-value=2e+02 Score=31.12 Aligned_cols=72 Identities=18% Similarity=0.228 Sum_probs=49.5
Q ss_pred CchhHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHh--ccccccCCccCcHHHHHHHHhh
Q 043392 78 GNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQ--LHESESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 78 ~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~--~~~~~~~~~~~sy~~l~~~~fG 153 (496)
.+.+..+-|=..++-|+|-+.=|.--+|.||++|.+.+++-.++.- +.|=..- .+-|+.| +|.+|++++.+|
T Consensus 52 tnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaG-aVhD~~~L~~SvR~~G---~Si~~ia~~~lG 125 (575)
T COG1966 52 TNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAG-AVHDYFSLMLSVRHGG---KSIGEIAGKYLG 125 (575)
T ss_pred CCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhh-hhhhhhheeeeeccCC---ccHHHHHHHHhh
Confidence 3445666677778899999999999999999999887765333221 2221111 1223334 699999999999
No 83
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=57.19 E-value=31 Score=37.32 Aligned_cols=91 Identities=15% Similarity=0.106 Sum_probs=53.0
Q ss_pred hhHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhcccc---ccC-Cc---cCcH-HHHHH--
Q 043392 80 AYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHES---ESG-TR---YSRY-LRLSM-- 149 (496)
Q Consensus 80 ~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~---~~~-~~---~~sy-~~l~~-- 149 (496)
+.++..|+..-++ .|=+++-..|+|...|++++.+...++..|..=-.-..++ +.| .. .++. .|.|.
T Consensus 37 ~~~cmlni~gv~l---flrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~slg~efggsi 113 (643)
T KOG2083|consen 37 FVRCMLNIFGVIL---FLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSLGPEFGGSI 113 (643)
T ss_pred hhhhhHHHHHHHH---hhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEecccccccchh
Confidence 3345556655554 6778999999999999888877777766654433322221 112 10 1111 22221
Q ss_pred ---HHhh--hHHHHHHHHHhhHHHHHHHH
Q 043392 150 ---AAFG--GTCVILVMIGGGTLKTFFEI 173 (496)
Q Consensus 150 ---~~fG--G~~i~y~i~~g~~l~~~~~~ 173 (496)
.+|| =.|..|++..++.+.++++.
T Consensus 114 giIy~f~~aVa~am~~vgfaEsv~~l~~~ 142 (643)
T KOG2083|consen 114 GIIYAFANAVATAMYVVGFAESVAHLFET 142 (643)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 1122 34666888889999998764
No 84
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=55.70 E-value=20 Score=32.41 Aligned_cols=86 Identities=19% Similarity=0.280 Sum_probs=51.1
Q ss_pred cchhhhhccccchhhcccccCC-CCCCCcccccccCCCchhHHHHHHHhhhhhhhhchHHHHHH--hcChhHHHHHHHHH
Q 043392 42 PMKKAITSVHGYLEEVGQFTKL-DPQDAWLPITESRNGNAYYSAFHTLSSGIGVQALVLPLAFT--TLGWTWGIICLLLV 118 (496)
Q Consensus 42 p~~~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~--~~G~~~giill~~~ 118 (496)
|..+..+.+++|++..+.--.+ |++.+-+.-+-.-..|++.|+|..+.+.+|.+.|+|=..+. +.||. .++++
T Consensus 41 p~~~~~~~l~~yf~~r~y~v~~~d~~~~~itFeG~V~pS~~lA~fLt~l~~~Gl~cl~LVL~~l~P~~g~~--~~~L~-- 116 (173)
T PF12046_consen 41 PPDEVLEQLKAYFEQRNYRVAEGDAEGEVITFEGFVAPSWFLAIFLTFLAAIGLACLGLVLSILFPDLGWW--PLLLV-- 116 (173)
T ss_pred CHHHHHHHHHHHHHhcCceecccCccccEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHHHHHHcCCcccH--HHHHH--
Confidence 4455667788888876653222 33332221112224678999999999999999999877754 45554 22222
Q ss_pred HHHHHHHHHHHHhc
Q 043392 119 FIWQLYTLWLLIQL 132 (496)
Q Consensus 119 ~~l~~~t~~lL~~~ 132 (496)
+++=+++..-.+-
T Consensus 117 -lLsPlAG~~Yw~k 129 (173)
T PF12046_consen 117 -LLSPLAGIFYWQK 129 (173)
T ss_pred -HHhhhhhhhhhhc
Confidence 3334455555554
No 85
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=55.23 E-value=25 Score=33.36 Aligned_cols=65 Identities=22% Similarity=0.383 Sum_probs=40.6
Q ss_pred HHHHHHHHhCcChHHHHHH---------HhhhHh-hhhhhHhHHHHHHHhCCCCc-----chhHHHHHHHHHHHHHHHHH
Q 043392 410 SVEFFISAALPFLRNLAAL---------IGGIAL-PITLAYPCFMWIHIRKPTTY-----SAIWGLNWALGILGMVLSIL 474 (496)
Q Consensus 410 ~~~~~iA~~iP~~~~v~~l---------vGa~~~-~l~filP~ll~lk~~~~~~~-----~~~~~~~~~l~~~g~~~~v~ 474 (496)
+.++++|..++.++-++.+ -||.++ -++++= |..+.+.+.. ....|+-|+++++|+++.+-
T Consensus 164 ~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll~lr 239 (262)
T KOG4812|consen 164 MWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLLLFLR 239 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHHHHHH
Confidence 4455566666666665554 377777 777665 4444332211 12466778899999999887
Q ss_pred HHHH
Q 043392 475 AVIG 478 (496)
Q Consensus 475 ~~~~ 478 (496)
+++.
T Consensus 240 ~~i~ 243 (262)
T KOG4812|consen 240 GFIN 243 (262)
T ss_pred HHHh
Confidence 7754
No 86
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=50.66 E-value=3.6e+02 Score=29.28 Aligned_cols=74 Identities=15% Similarity=0.202 Sum_probs=39.2
Q ss_pred cCCCchhHHHHHHHhhhhh-hhhchHHHHHHhcChhHHHHHHHHHHHHHH-HHHHHHHhccccccCCccCcHHHHHHHHh
Q 043392 75 SRNGNAYYSAFHTLSSGIG-VQALVLPLAFTTLGWTWGIICLLLVFIWQL-YTLWLLIQLHESESGTRYSRYLRLSMAAF 152 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~giill~~~~~l~~-~t~~lL~~~~~~~~~~~~~sy~~l~~~~f 152 (496)
.|+-+++...+.+..+.++ ...++.|-...+.|+- +....+ ...+.+ ...+++.+-.+ +.+ ..|..|.-++=|
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~-g~~~~~~i~~~~~a~~lr-r~g--~~T~~d~l~~Rf 140 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSL-GFLVGWPIILFLIAERLR-NLG--RYTFADVASYRL 140 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHH-HHHHHHHHHHHHHHHHHH-HcC--CccHHHHHHHHc
Confidence 4566667666666666665 5788888777777874 222111 111111 12233333222 123 367777777666
Q ss_pred h
Q 043392 153 G 153 (496)
Q Consensus 153 G 153 (496)
|
T Consensus 141 ~ 141 (549)
T TIGR02711 141 K 141 (549)
T ss_pred C
Confidence 6
No 87
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=48.93 E-value=3.5e+02 Score=28.58 Aligned_cols=122 Identities=13% Similarity=0.131 Sum_probs=55.1
Q ss_pred ccchhhhhhHHHHHHhhc--CCCCchhhHHHHHHHHHHHHHHHhhheeeeeccCCCCcccCccccccchhhHHHHHHHHH
Q 043392 187 TTVEWYLVFICAAVVLAQ--LPNLNSIAGVSLIGAITAVSYCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLG 264 (496)
Q Consensus 187 ~~~~~~ii~~~~~~pl~~--l~~l~~L~~~S~~~~~~~~~~~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~a~g 264 (496)
+...|+++.++++...+. .|-++.+.+.+..-.+....+.+..+.-. ++... .... . ...++.++..++.
T Consensus 129 ~~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~--~~~~~-~~~~--~---~~~~~~~fl~a~s 200 (442)
T COG1457 129 PVWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRS--KGGLD-ALWV--K---GPTSPLSFLSALS 200 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccc-eeec--c---CCCcchhHHHHHH
Confidence 345566666665555544 46677777777655444333332222111 11111 1111 0 0112222222322
Q ss_pred HHH-HhhccccchHhHhhcCCCCCCCCcccCcchhhh---hHHHHHHHHHHhhhhhhhhcccC
Q 043392 265 IIA-FAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVK---FAYLIIAMCLFPLAIGGYSAYGN 323 (496)
Q Consensus 265 i~~-faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v~---~s~~i~~~~Y~~~g~~GY~~fG~ 323 (496)
..+ +.-..-.......+-+| +|+ + +++.. .+......+-+.+|.+.-.+-|+
T Consensus 201 lv~g~~~sw~~~~aDysRy~~----~~t--~-~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~ 256 (442)
T COG1457 201 LVIGSFASWGPYAADYSRYAP----SPT--P-SKAFLAAVLGFFLGTSFMMILGAALAAAAGN 256 (442)
T ss_pred HHHHHHHhhhhhhhhhhhhcC----CCc--h-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 211 11122344455666674 232 1 24443 34555555666777777777777
No 88
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=48.19 E-value=3.1e+02 Score=27.78 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=17.3
Q ss_pred cchhhhhhHHHHHHhhc--CCCCchhhHHHHH
Q 043392 188 TVEWYLVFICAAVVLAQ--LPNLNSIAGVSLI 217 (496)
Q Consensus 188 ~~~~~ii~~~~~~pl~~--l~~l~~L~~~S~~ 217 (496)
...|.++..+..+.+.+ .++.+.+..+..+
T Consensus 91 ~~~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~ 122 (358)
T PF01566_consen 91 LWIWVLLVAVIAILLLWLSSGGYRRLERILKV 122 (358)
T ss_pred cHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 35555555544444444 6777887776654
No 89
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=44.78 E-value=22 Score=24.57 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=22.1
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhcccCc
Q 043392 297 RGVKFAYLIIAMCLFPLAIGGYSAYGNL 324 (496)
Q Consensus 297 ~~v~~s~~i~~~~Y~~~g~~GY~~fG~~ 324 (496)
.+..+++.+..++..+.|..-|.+||..
T Consensus 6 ~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 6 PALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred hhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 4566677777888888888889999983
No 90
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=44.62 E-value=23 Score=24.11 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=20.6
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhcccCcc
Q 043392 298 GVKFAYLIIAMCLFPLAIGGYSAYGNLA 325 (496)
Q Consensus 298 ~v~~s~~i~~~~Y~~~g~~GY~~fG~~~ 325 (496)
+...++.+..++..+.|..-|.+||...
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 3445666777777888888899999833
No 91
>CHL00020 psbN photosystem II protein N
Probab=42.90 E-value=21 Score=24.30 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=21.2
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhcccCc
Q 043392 297 RGVKFAYLIIAMCLFPLAIGGYSAYGNL 324 (496)
Q Consensus 297 ~~v~~s~~i~~~~Y~~~g~~GY~~fG~~ 324 (496)
.+...++.+..++....|..-|-+||..
T Consensus 3 ~A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 3 TATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred chhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 3455667777777788888889999983
No 92
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=42.15 E-value=5.7e+02 Score=29.06 Aligned_cols=67 Identities=16% Similarity=0.342 Sum_probs=39.1
Q ss_pred HHHHHhCcChHHHHHHHhhhHhhhhhhH---hHHHHHHHhCCCCcchh-HHHHHHHHHHHHHHHHHHHHHHHH
Q 043392 413 FFISAALPFLRNLAALIGGIALPITLAY---PCFMWIHIRKPTTYSAI-WGLNWALGILGMVLSILAVIGATW 481 (496)
Q Consensus 413 ~~iA~~iP~~~~v~~lvGa~~~~l~fil---P~ll~lk~~~~~~~~~~-~~~~~~l~~~g~~~~v~~~~~si~ 481 (496)
+-+++.+-+++.+..++.=+. .+||.+ -|.++=.++.+ .|++| ++.+|.+-.+|..+|++-...+-|
T Consensus 557 ce~gILigslD~iApilsmFF-LMCY~fVNLaCavqtLLrtP-nWRPRfkyyHW~LSflG~sLC~~iMF~~SW 627 (1075)
T KOG2082|consen 557 CECGILIGSLDLIAPILSMFF-LMCYLFVNLACAVQTLLRTP-NWRPRFKYYHWSLSFLGASLCLAIMFISSW 627 (1075)
T ss_pred HHhhheeechhHHHHHHHHHH-HHHHHHHhHHHHHHHHhcCC-CCCccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777665332 444433 33344334444 44443 467999999898888765554443
No 93
>PRK09395 actP acetate permease; Provisional
Probab=35.76 E-value=6e+02 Score=27.55 Aligned_cols=75 Identities=9% Similarity=0.051 Sum_probs=40.2
Q ss_pred cCCCchhHHHHHHHhhhhh-hhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh
Q 043392 75 SRNGNAYYSAFHTLSSGIG-VQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG 153 (496)
.|+-.++...+.+..+.+| ...++.|-.....|+..... .....+-.....+++.+-.+ +.+ ..|+.|.-+.=||
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~-~~~~~~g~~~~~~~~~~~~r-~~g--~~T~~d~l~~Ryg 143 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIY-SIGFLVGWPIILFLIAERLR-NLG--KYTFADVASYRLK 143 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHHH-HHHHHHHHHHHHHHHHHHHh-hCC--CccHHHHHHHHcC
Confidence 4566667677777777666 45678887777778742111 11111111112223333222 112 4788888877777
No 94
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=35.09 E-value=89 Score=28.95 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=41.0
Q ss_pred HHhhhHh-hhhhhHhHHHHHHHhCCCCc----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043392 428 LIGGIAL-PITLAYPCFMWIHIRKPTTY----------SAIWGLNWALGILGMVLSILAVIGATWSLAT 485 (496)
Q Consensus 428 lvGa~~~-~l~filP~ll~lk~~~~~~~----------~~~~~~~~~l~~~g~~~~v~~~~~si~~ii~ 485 (496)
+.|++.+ -+..++|+.+.+.++|++.. +.......+...+|++.+++..+.|..++.+
T Consensus 49 ~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 49 YFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred ecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3466666 78889999999999876432 2233445666777888888888888877765
No 95
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=33.74 E-value=5.9e+02 Score=26.87 Aligned_cols=42 Identities=12% Similarity=0.114 Sum_probs=28.4
Q ss_pred chhHHHHHHHhhhhhhhhchHHHHHHh---cChhHHHHHHHHHHH
Q 043392 79 NAYYSAFHTLSSGIGVQALVLPLAFTT---LGWTWGIICLLLVFI 120 (496)
Q Consensus 79 s~~~a~~~l~~~~iG~GiL~LP~af~~---~G~~~giill~~~~~ 120 (496)
+.+...+.+..-..|+|=|=.|-..-+ .-|.++.+.+++.++
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~V 53 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAV 53 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHH
Confidence 456678888889999999999877432 235555555544443
No 96
>TIGR02901 QoxD cytochrome aa3 quinol oxidase, subunit IV. This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=30.38 E-value=3e+02 Score=22.33 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043392 461 NWALGILGMVLSILAVIGATWSL 483 (496)
Q Consensus 461 ~~~l~~~g~~~~v~~~~~si~~i 483 (496)
|...+++++++..+...+|+|=+
T Consensus 68 n~~~l~ft~~i~~i~v~GSlWIm 90 (94)
T TIGR02901 68 QIYNIYYSAFIALVTVFGSLWVM 90 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567778888888888888754
No 97
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=30.34 E-value=92 Score=24.68 Aligned_cols=56 Identities=13% Similarity=0.234 Sum_probs=30.4
Q ss_pred HHHHHHHhhccccchHhHhhcCCCCCCCCcccCcchhhhhHHHHHHHHHHhhhhhhhhcccC
Q 043392 262 SLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVKFAYLIIAMCLFPLAIGGYSAYGN 323 (496)
Q Consensus 262 a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v~~s~~i~~~~Y~~~g~~GY~~fG~ 323 (496)
..|++..+-.|...+.+..+.= .+|.... ||++.+-. ++.-+-+.+|++.|..||.
T Consensus 16 i~GIiLL~~ACIFAfidFSK~~----s~~~~~~-wRalSii~-FIlG~vl~lGilifs~y~~ 71 (91)
T PHA02680 16 ICGVLLLTAACVFAFVDFSKNT----SNVTDYV-WRALSVTC-FIVGAVLLLGLFVFSMYRK 71 (91)
T ss_pred HHHHHHHHHHHHHhhhhhhccC----CCCcchh-HHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 4455554444544445655543 2455544 66665422 2222345678888888883
No 98
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=30.32 E-value=3.2e+02 Score=22.77 Aligned_cols=24 Identities=17% Similarity=0.437 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043392 461 NWALGILGMVLSILAVIGATWSLA 484 (496)
Q Consensus 461 ~~~l~~~g~~~~v~~~~~si~~ii 484 (496)
|..-+++++++.++.+.+|+|=.-
T Consensus 77 n~~al~Ft~~i~~iiv~GSlWIM~ 100 (109)
T PRK10582 77 NMTAFVFTVLIIAILVVGSIWIMW 100 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455667777777777777877544
No 99
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=29.73 E-value=4.4e+02 Score=25.83 Aligned_cols=53 Identities=9% Similarity=0.026 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhCcChHHHHHHHhhhHhhhhhhHhHHHHHHHhCC
Q 043392 399 WLRSGIRVFFGSVEFFISAALPFLRNLAALIGGIALPITLAYPCFMWIHIRKP 451 (496)
Q Consensus 399 ~~r~~~r~~~~~~~~~iA~~iP~~~~v~~lvGa~~~~l~filP~ll~lk~~~~ 451 (496)
++..+.-..+-+...+.-+..+..+.-.++.=+=.+.+.-.+=.++++|-+|.
T Consensus 196 ~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt 248 (269)
T PF06800_consen 196 WKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKT 248 (269)
T ss_pred HHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCc
Confidence 44444444444444444455566666555544444433334445555555443
No 100
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=28.07 E-value=4.7e+02 Score=23.89 Aligned_cols=16 Identities=25% Similarity=0.559 Sum_probs=12.6
Q ss_pred cccchhHHHHHHhhhc
Q 043392 375 IFAMPVFDNLEFKYTS 390 (496)
Q Consensus 375 l~~~p~~~~~e~~~~~ 390 (496)
+..+|+.+.+|+++..
T Consensus 19 ~~~~piL~~ie~~~~~ 34 (186)
T COG5052 19 LQAFPILREIENLYNR 34 (186)
T ss_pred HHhhHHHHHHHHHhCc
Confidence 3468999999998863
No 101
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=28.04 E-value=3.3e+02 Score=22.14 Aligned_cols=24 Identities=13% Similarity=0.383 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043392 461 NWALGILGMVLSILAVIGATWSLA 484 (496)
Q Consensus 461 ~~~l~~~g~~~~v~~~~~si~~ii 484 (496)
|....++++++.++...+|+|=+-
T Consensus 66 n~~~l~Ft~~i~~iiv~GSiWIm~ 89 (96)
T TIGR02847 66 NLISLLFTILIIFILIGGSIWIMH 89 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677777777777778887554
No 102
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=23.29 E-value=2e+02 Score=25.63 Aligned_cols=23 Identities=9% Similarity=0.007 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhCcChHHHHHHHh
Q 043392 408 FGSVEFFISAALPFLRNLAALIG 430 (496)
Q Consensus 408 ~~~~~~~iA~~iP~~~~v~~lvG 430 (496)
..+...++...+|.++.+++...
T Consensus 134 ~~~~l~~~i~~~P~~~~~f~~~~ 156 (182)
T PF00689_consen 134 ISIALQILIVYVPGLNRIFGTAP 156 (182)
T ss_dssp HHHHHHHHHHHSTTHHHHST---
T ss_pred HHHHHHHHHhcchhhHhhhcccC
Confidence 33444445556677776666553
No 103
>PRK00701 manganese transport protein MntH; Reviewed
Probab=21.15 E-value=9.8e+02 Score=25.17 Aligned_cols=12 Identities=0% Similarity=-0.009 Sum_probs=9.2
Q ss_pred CcHHHHHHHHhh
Q 043392 142 SRYLRLSMAAFG 153 (496)
Q Consensus 142 ~sy~~l~~~~fG 153 (496)
.+..|+.++-||
T Consensus 94 ~~l~~~ir~~~~ 105 (439)
T PRK00701 94 RDLAQACRDRYP 105 (439)
T ss_pred CCHHHHHHHHCC
Confidence 467888888887
Done!