Query 043392
Match_columns 496
No_of_seqs 218 out of 1382
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 07:29:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043392.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043392hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.4 8.8E-11 3E-15 121.9 27.0 236 75-323 7-252 (445)
2 3gia_A Uncharacterized protein 99.0 3.8E-08 1.3E-12 102.0 22.8 231 75-323 5-249 (444)
3 4djk_A Probable glutamate/gamm 98.8 4.1E-06 1.4E-10 88.2 28.5 59 260-323 204-262 (511)
4 2jln_A MHP1; hydantoin, transp 97.5 0.023 7.7E-07 59.6 24.0 139 75-226 24-179 (501)
5 3dh4_A Sodium/glucose cotransp 93.9 7 0.00024 40.7 25.3 75 75-153 19-94 (530)
6 2xq2_A Sodium/glucose cotransp 92.9 11 0.00037 39.9 22.6 75 75-153 48-123 (593)
7 2a65_A Leutaa, Na(+):neurotran 83.8 44 0.0015 34.6 23.6 97 79-175 10-124 (519)
8 4b4a_A TATC, SEC-independent p 20.4 4.9E+02 0.017 23.7 12.3 88 360-450 64-176 (249)
9 2l2t_A Receptor tyrosine-prote 11.6 3.4E+02 0.012 17.7 4.0 26 424-449 12-37 (44)
10 2ks1_B Epidermal growth factor 10.5 3.2E+02 0.011 17.8 3.7 25 425-449 14-38 (44)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.40 E-value=8.8e-11 Score=121.95 Aligned_cols=236 Identities=15% Similarity=0.072 Sum_probs=132.0
Q ss_pred cCCCchhHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh-
Q 043392 75 SRNGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG- 153 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG- 153 (496)
+|+-+.++.++..+++++|+|++.+|...++.|.. +++..++.++........+.|...+.+. .-.+.+..++.+|
T Consensus 7 ~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~--~Gg~y~~~~~~~G~ 83 (445)
T 3l1l_A 7 AHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPS--PGGSYAYARRCFGP 83 (445)
T ss_dssp CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC--TTTHHHHHHHHSCH
T ss_pred CCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCC--CCCchhhHHhHcCC
Confidence 46778899999999999999999999999898874 7777888888888888888887554322 2356666788888
Q ss_pred --hHHHHHHHHHhh------HHHHHHHHhhcCCCcccccccccchhhhhhHH-HHHHhhcCCCCchhhHHHHHHHHHHHH
Q 043392 154 --GTCVILVMIGGG------TLKTFFEIVCGASETCNVTRLTTVEWYLVFIC-AAVVLAQLPNLNSIAGVSLIGAITAVS 224 (496)
Q Consensus 154 --G~~i~y~i~~g~------~l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~-~~~pl~~l~~l~~L~~~S~~~~~~~~~ 224 (496)
|...++....+. ......+......+.+ ..+ ...+.+...+ +++-..-.+..+....+..+.....+.
T Consensus 84 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~ 160 (445)
T 3l1l_A 84 FLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-KDP--WVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALI 160 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG-GSH--HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc-ccc--HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 444433322221 1111111111100101 000 0111111111 111111223444444444333332222
Q ss_pred HHHhhheeeeeccCCCCcccCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcchhhhhHHH
Q 043392 225 YCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVKFAYL 304 (496)
Q Consensus 225 ~~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v~~s~~ 304 (496)
..+++++..+...+..+. ..++. ......+.++..++....|+|.|...+....+|+ |+|++ +..|++..+..
T Consensus 161 ~~~~~~i~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~----k~p~r-~ip~a~~~~~~ 233 (445)
T 3l1l_A 161 PIVGIAVFGWFWFRGETY-MAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPIATIGGVL 233 (445)
T ss_dssp HHHHHHHTTSTTCCCCCC-CCC------------HHHHHHHHHHTTTTTTHHHHGGGGB----SSHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhc-ccccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHh----cCccc-cccHHHHHHHH
Confidence 222222222222111111 01111 1111235578889999999999999999999999 67753 33488889999
Q ss_pred HHHHHHHhhhhhhhhcccC
Q 043392 305 IIAMCLFPLAIGGYSAYGN 323 (496)
Q Consensus 305 i~~~~Y~~~g~~GY~~fG~ 323 (496)
++.++|....+..+...+.
T Consensus 234 ~~~~~y~~~~~~~~~~~~~ 252 (445)
T 3l1l_A 234 IAAVCYVLSTTAIMGMIPN 252 (445)
T ss_dssp HHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHhcCCH
Confidence 9999999888776666655
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.00 E-value=3.8e-08 Score=101.96 Aligned_cols=231 Identities=11% Similarity=0.082 Sum_probs=128.1
Q ss_pred cCCCchhHHHHHHHhhhhhhhhchHHH-HHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh
Q 043392 75 SRNGNAYYSAFHTLSSGIGVQALVLPL-AFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG 153 (496)
+|+-+.++.++..+++++|+|++.+|- +.++.|- ..++..++.+++...+...+.|...+.+. .-...+.+++.+|
T Consensus 5 ~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~--~Gg~y~~~~~~~G 81 (444)
T 3gia_A 5 NKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVS--NAGPIAFIHKAIG 81 (444)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCC--TTTHHHHHHHHHC
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCC--CCcHHHhHHHHhC
Confidence 467788999999999999999998874 4556666 57777788888888888888887654332 2234455666666
Q ss_pred -----hHH-----HHHHHHHhhHHHHHHHHhhcCCCcccccccccchhhhhhHH---HHHHhhcCCCCchhhHHHHHHHH
Q 043392 154 -----GTC-----VILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFIC---AAVVLAQLPNLNSIAGVSLIGAI 220 (496)
Q Consensus 154 -----G~~-----i~y~i~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~---~~~pl~~l~~l~~L~~~S~~~~~ 220 (496)
|.. ..|.+..+.......+......+ .. ....+..+... +++-..-.+..+....+..+...
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~ 156 (444)
T 3gia_A 82 DNIITGALSILLWMSYVISIALFAKGFAGYFLPLIN----AP-INTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVL 156 (444)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----CC-CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CC-CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 211 12222222222111111110000 00 01112111111 11112223344444444433333
Q ss_pred HHHHHHHhhheeeeeccCCCCcccCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcchhhh
Q 043392 221 TAVSYCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVK 300 (496)
Q Consensus 221 ~~~~~~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v~ 300 (496)
..+...+++++..+...+.. ++.| ......+.+++.++....|+|.|...+....+|+ |+|++ +..|++.
T Consensus 157 ~~i~~~~~~ii~~~~~~~~~--~~~~---~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~----k~P~r-~ip~ai~ 226 (444)
T 3gia_A 157 VKLLILGLFIFAGLITIHPS--YVIP---DLAPSAVSGMIFASAIFFLSYMGFGVITNASEHI----ENPKK-NVPRAIF 226 (444)
T ss_dssp HHHHHHHHHHHHHHHHCCGG--GTSC---CCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGB----SSHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcChh--hcCC---CCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHc----cCccc-chhHHHH
Confidence 22222222222222221111 1221 1123345678888999999999999999999999 67854 2348889
Q ss_pred hHHHHHHHHHHhhhhhhhhcccC
Q 043392 301 FAYLIIAMCLFPLAIGGYSAYGN 323 (496)
Q Consensus 301 ~s~~i~~~~Y~~~g~~GY~~fG~ 323 (496)
.+..++.++|....+......+.
T Consensus 227 ~~~~~~~~~y~~~~~~~~~~~~~ 249 (444)
T 3gia_A 227 ISILIVMFVYVGVAISAIGNLPI 249 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCH
Confidence 99999999999877765555543
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.76 E-value=4.1e-06 Score=88.23 Aligned_cols=59 Identities=8% Similarity=-0.030 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcchhhhhHHHHHHHHHHhhhhhhhhcccC
Q 043392 260 LNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVKFAYLIIAMCLFPLAIGGYSAYGN 323 (496)
Q Consensus 260 ~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v~~s~~i~~~~Y~~~g~~GY~~fG~ 323 (496)
..++...+|+|.|........+|+ |+|++ +.-|++..++.++.++|....+.-....++
T Consensus 204 ~~~~~~~~~a~~G~e~~~~~a~E~----k~P~k-~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~ 262 (511)
T 4djk_A 204 LVVFVAFILSYMGVEASATHVNEM----SNPGR-DYPLAMLLLMVAAICLSSVGGLSIAMVIPG 262 (511)
T ss_dssp TTTHHHHHHHHTTGGGGTGGGSSS----SCCTT-THHHHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhc----cCccc-chhHHHHHHHHHHHHHHHHHHHHHHeecCH
Confidence 345677899999999999999999 67764 344889999999999999988777666666
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=97.47 E-value=0.023 Score=59.56 Aligned_cols=139 Identities=14% Similarity=0.152 Sum_probs=70.2
Q ss_pred cCCCchhHHHHHHHhhhhhhhhchHHHHHHh-cChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh
Q 043392 75 SRNGNAYYSAFHTLSSGIGVQALVLPLAFTT-LGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~-~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG 153 (496)
+|+.+.++-+..-+...++.+.+.+...+.. .++..+++.+++..++...-+.++.....+ .| .+|.++.|..||
T Consensus 24 ~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~-~G---l~~~v~~R~~FG 99 (501)
T 2jln_A 24 ERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIR-WG---INFTVAARMPFG 99 (501)
T ss_dssp GCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHH-HC---CCHHHHTTTTSC
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhh-cC---CChhhhhHhhcc
Confidence 3556666555555555555555555444433 344556655555555554444444444332 13 468999999999
Q ss_pred --hH--------------HHHHHHHHhhHHHHHHHHhhcCCCcccccccccchhhhhhHHHHHHhhcCCCCchhhHHHHH
Q 043392 154 --GT--------------CVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQLPNLNSIAGVSLI 217 (496)
Q Consensus 154 --G~--------------~i~y~i~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~~l~~l~~L~~~S~~ 217 (496)
|. ...-...+|+.+..++....+. + ....+++++.++.+++. ..-++.++++..+
T Consensus 100 ~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~-~-------~~~v~~~i~~~l~~~~~-~~G~~~i~~~~~~ 170 (501)
T 2jln_A 100 IRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGF-T-------NLPLWIVIFGAIQVVTT-FYGITFIRWMNVF 170 (501)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C-------CHHHHHHHHHHHHHHHH-TTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-c-------hHHHHHHHHHHHHHHHH-HhCHHHHHHHHHH
Confidence 21 1222234455665554332220 0 01234455555555555 3445666666655
Q ss_pred HHHHHHHHH
Q 043392 218 GAITAVSYC 226 (496)
Q Consensus 218 ~~~~~~~~~ 226 (496)
.....+..+
T Consensus 171 ~~p~~~i~~ 179 (501)
T 2jln_A 171 ASPVLLAMG 179 (501)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 544433333
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=93.93 E-value=7 Score=40.74 Aligned_cols=75 Identities=7% Similarity=-0.033 Sum_probs=43.5
Q ss_pred cCCCchhHHHHHHHhhhhh-hhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh
Q 043392 75 SRNGNAYYSAFHTLSSGIG-VQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG 153 (496)
.|+-+++...+.+..+.++ ...+++|-.....|+......... ++......+.+.....+ .+..|..|.-++-||
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~~~i~~~~~~p~~~~---~~~~T~~e~l~~Rfg 94 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIE---KGIYTIPEFVEKRFN 94 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHHHHHHHHHTHHHHHH---TTCCSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHH---cCCccHHHHHHHHcC
Confidence 4567778888888877776 467888988888887532211111 11111112222222222 235788999888888
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=92.94 E-value=11 Score=39.91 Aligned_cols=75 Identities=7% Similarity=-0.033 Sum_probs=39.4
Q ss_pred cCCCchhHHHHHHHhhhhh-hhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh
Q 043392 75 SRNGNAYYSAFHTLSSGIG-VQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG 153 (496)
Q Consensus 75 ~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG 153 (496)
.|+-+++...+.+..+.++ ...++.|-...+.|+......... ++......+.+.....+ .+..|..|.-++=||
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~-~~~~~~~~~~~~p~~~r---~~~~T~~e~l~~Rfg 123 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIE---KGIYTIPEFVEKRFN 123 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHHH-HHHHHHHHHTHHHHHHH---TTCCSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHh---CCCCCcHHHHHHHcc
Confidence 3566778788888776666 455788888778887532111110 00001111222222221 235788888888888
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=83.76 E-value=44 Score=34.62 Aligned_cols=97 Identities=20% Similarity=0.195 Sum_probs=55.7
Q ss_pred chhHHHHHHHhhhhhhh-hchHHHHHHhcC----hhHHHHHHHHHHHHHHHHHHHHHhccc-cccCCccCcHHHHHH---
Q 043392 79 NAYYSAFHTLSSGIGVQ-ALVLPLAFTTLG----WTWGIICLLLVFIWQLYTLWLLIQLHE-SESGTRYSRYLRLSM--- 149 (496)
Q Consensus 79 s~~~a~~~l~~~~iG~G-iL~LP~af~~~G----~~~giill~~~~~l~~~t~~lL~~~~~-~~~~~~~~sy~~l~~--- 149 (496)
+..+-++..+.+.+|.| +.=.||-..+-| +++=+++++++|+=-.+.=..+.|-.. +..+.....|..++.
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~l~~~~~ 89 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRF 89 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSCSHH
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHHhcCCcC
Confidence 34667788889999998 899999866665 334445555556555666666666211 100112345655542
Q ss_pred -HHhh--------hHHHHHHHHHhhHHHHHHHHhh
Q 043392 150 -AAFG--------GTCVILVMIGGGTLKTFFEIVC 175 (496)
Q Consensus 150 -~~fG--------G~~i~y~i~~g~~l~~~~~~~~ 175 (496)
+-.| ..++-|.++.|=.+.-++..+.
T Consensus 90 ~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~ 124 (519)
T 2a65_A 90 AKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLV 124 (519)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2233 2344566666666655554443
No 8
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=20.39 E-value=4.9e+02 Score=23.71 Aligned_cols=88 Identities=7% Similarity=0.135 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhhhhccccchhHHHHHHhhhccCCCCCcchhHHHHH-HHHHHHHHHHHHh--------------------
Q 043392 360 LTSLFVVISSLSSFQIFAMPVFDNLEFKYTSKYNKPCPWWLRSGIR-VFFGSVEFFISAA-------------------- 418 (496)
Q Consensus 360 ia~~~~~~~~l~sypl~~~p~~~~~e~~~~~~~~~~~~~~~r~~~r-~~~~~~~~~iA~~-------------------- 418 (496)
-.++......+.++|.....+...+.--+.+++++ .....+.. ..+.......+..
T Consensus 64 ~lkvs~~~g~~~a~P~ilyQiw~Fi~PgLy~~Err---~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl~~~~~~~i~~ 140 (249)
T 4b4a_A 64 LIKISLAVGFIIASPVILYQFWRFIEPALYSHEKR---AFIPLLLGSILLFMLGALFAYFIVLPLALKFLLGLGFTQLLA 140 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCTT---TTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTCSSSTTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHh
Confidence 35666677788888887766665555444333222 23333222 2222222223321
Q ss_pred Cc--ChHHHHHHHhhhHh--hhhhhHhHHHHHHHhC
Q 043392 419 LP--FLRNLAALIGGIAL--PITLAYPCFMWIHIRK 450 (496)
Q Consensus 419 iP--~~~~v~~lvGa~~~--~l~filP~ll~lk~~~ 450 (496)
.| ++++.++++=.+.. .++|-+|.++.+-.+-
T Consensus 141 ~~~~~i~~Yl~fv~~l~l~fGl~FelPvi~~~L~~~ 176 (249)
T 4b4a_A 141 TPYLSVDMYISFVLKLVVAFGIAFEMPIVLYVLQKA 176 (249)
T ss_dssp STTEEHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHT
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 15 67777777776654 7899999998876653
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=11.57 E-value=3.4e+02 Score=17.74 Aligned_cols=26 Identities=15% Similarity=0.391 Sum_probs=12.5
Q ss_pred HHHHHHhhhHhhhhhhHhHHHHHHHh
Q 043392 424 NLAALIGGIALPITLAYPCFMWIHIR 449 (496)
Q Consensus 424 ~v~~lvGa~~~~l~filP~ll~lk~~ 449 (496)
...+.+|++.......+=.++|++-+
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEeehHHHHHHHHHHHHHHHHhhhh
Confidence 34566676666222233334444444
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=10.48 E-value=3.2e+02 Score=17.79 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=12.0
Q ss_pred HHHHHhhhHhhhhhhHhHHHHHHHh
Q 043392 425 LAALIGGIALPITLAYPCFMWIHIR 449 (496)
Q Consensus 425 v~~lvGa~~~~l~filP~ll~lk~~ 449 (496)
..+.+|++.......+=.++|++-+
T Consensus 14 A~gVVgGv~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 14 ATGMVGALLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EeehhHHHHHHHHHHHHHHHHhhhh
Confidence 4566676666222233334444443
Done!