Query 043392
Match_columns 496
No_of_seqs 218 out of 1382
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 07:29:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043392.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043392hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wpga4 f.33.1.1 (A:1-124,A:24 17.3 2.1E+02 0.015 26.3 9.2 32 263-299 280-311 (472)
2 d1rh5b_ f.23.28.1 (B:) Preprot 6.9 67 0.0049 20.6 0.8 30 288-321 16-45 (56)
3 d3cx5c1 f.32.1.1 (C:262-385) M 4.1 4.6E+02 0.033 19.1 4.3 22 418-441 23-45 (124)
4 d1ppjc1 f.32.1.1 (C:261-379) M 3.6 5.1E+02 0.037 18.7 4.2 24 417-442 22-46 (119)
5 d1mv8a2 c.2.1.6 (A:1-202) GDP- 3.6 1.4E+02 0.01 23.9 0.8 13 90-102 4-16 (202)
6 d2naca2 c.23.12.1 (A:1-147,A:3 3.5 4.7E+02 0.034 20.7 4.1 13 48-60 57-69 (186)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 3.4 2.6E+02 0.019 15.7 1.6 14 107-120 16-29 (37)
8 d2r6gf1 e.70.1.1 (F:13-260) Ma 2.9 6.8E+02 0.05 20.5 4.8 36 84-122 7-42 (248)
9 d1ciya3 f.1.3.1 (A:33-255) del 2.9 4.6E+02 0.034 21.1 3.6 26 407-432 7-32 (223)
10 d1q90g_ f.23.26.1 (G:) PetG su 2.9 3.9E+02 0.029 14.2 1.9 18 106-123 7-24 (30)
No 1
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=17.25 E-value=2.1e+02 Score=26.34 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=16.4
Q ss_pred HHHHHHhhccccchHhHhhcCCCCCCCCcccCcchhh
Q 043392 263 LGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGV 299 (496)
Q Consensus 263 ~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v 299 (496)
++-++++++ |+=.+-|+++|++|++....+..
T Consensus 280 lpaiaL~~e-----p~d~~iM~~~Pr~~~~~li~~~~ 311 (472)
T d1wpga4 280 LPATALGFN-----PPDLDIMDRPPRSPKEPLISGWL 311 (472)
T ss_dssp HHHHHHTTC-----CCCSGGGGSCCCCTTCCSSCTHH
T ss_pred HHHHHHhcC-----CCchhhhcCCCCCCCccccCHHH
Confidence 455555554 22245577666666554444443
No 2
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=6.85 E-value=67 Score=20.64 Aligned_cols=30 Identities=30% Similarity=0.295 Sum_probs=15.9
Q ss_pred CCCcccCcchhhhhHHHHHHHHHHhhhhhhhhcc
Q 043392 288 KKPSRIPMWRGVKFAYLIIAMCLFPLAIGGYSAY 321 (496)
Q Consensus 288 k~P~~~~m~~~v~~s~~i~~~~Y~~~g~~GY~~f 321 (496)
++|++.-..+...+ +.+=.+++|+.||..+
T Consensus 16 ~KP~~~Ef~~ia~v----~~iG~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 16 KKPTKDEYLAVAKV----TALGISLLGIIGYIIH 45 (56)
T ss_dssp ECCCHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 46776665554443 2233355666666543
No 3
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.08 E-value=4.6e+02 Score=19.08 Aligned_cols=22 Identities=27% Similarity=0.390 Sum_probs=9.5
Q ss_pred hCcChHHHHHHHhhhHh-hhhhhHh
Q 043392 418 ALPFLRNLAALIGGIAL-PITLAYP 441 (496)
Q Consensus 418 ~iP~~~~v~~lvGa~~~-~l~filP 441 (496)
.+|| +..|++--+++ .+-+.+|
T Consensus 23 siP~--k~~Gvl~~~~si~il~~lP 45 (124)
T d3cx5c1 23 SIPD--KLLGVITMFAAILVLLVLP 45 (124)
T ss_dssp TSSS--HHHHHHHHHHHHHGGGGHH
T ss_pred cCCc--chhhhHHHHHHHHHHHHHH
Confidence 4664 34444333334 3334444
No 4
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.63 E-value=5.1e+02 Score=18.69 Aligned_cols=24 Identities=17% Similarity=0.175 Sum_probs=10.3
Q ss_pred HhCcChHHHHHHHhhhHh-hhhhhHhH
Q 043392 417 AALPFLRNLAALIGGIAL-PITLAYPC 442 (496)
Q Consensus 417 ~~iP~~~~v~~lvGa~~~-~l~filP~ 442 (496)
=.+|| +..|++.-+++ .+-+.+|-
T Consensus 22 Rsipn--K~gGvl~m~~si~il~~lP~ 46 (119)
T d1ppjc1 22 RSIPN--KLGGVLALAFSILILALIPL 46 (119)
T ss_dssp HTCSS--HHHHHHHHHHHHHGGGTHHH
T ss_pred hcCCc--hhHHHHHHHHHHHHHHHHHH
Confidence 34675 33344333334 33344443
No 5
>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.62 E-value=1.4e+02 Score=23.93 Aligned_cols=13 Identities=23% Similarity=0.010 Sum_probs=9.8
Q ss_pred hhhhhhhchHHHH
Q 043392 90 SGIGVQALVLPLA 102 (496)
Q Consensus 90 ~~iG~GiL~LP~a 102 (496)
++||.|-+++|.|
T Consensus 4 ~ViGlG~vGl~~a 16 (202)
T d1mv8a2 4 SIFGLGYVGAVCA 16 (202)
T ss_dssp EEECCSTTHHHHH
T ss_pred EEECCCHhHHHHH
Confidence 4678888887776
No 6
>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}
Probab=3.48 E-value=4.7e+02 Score=20.69 Aligned_cols=13 Identities=31% Similarity=0.498 Sum_probs=10.2
Q ss_pred hccccchhhcccc
Q 043392 48 TSVHGYLEEVGQF 60 (496)
Q Consensus 48 ~~~~~~~e~~~~~ 60 (496)
..+++++|+.||-
T Consensus 57 lglr~~Le~~Ghe 69 (186)
T d2naca2 57 LGLRKYLESNGHT 69 (186)
T ss_dssp GGCHHHHHHTTCE
T ss_pred hhHHHHHHHCCCE
Confidence 4678889999884
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.44 E-value=2.6e+02 Score=15.70 Aligned_cols=14 Identities=14% Similarity=0.446 Sum_probs=7.8
Q ss_pred ChhHHHHHHHHHHH
Q 043392 107 GWTWGIICLLLVFI 120 (496)
Q Consensus 107 G~~~giill~~~~~ 120 (496)
.+.||.+++.+.++
T Consensus 16 sLy~GlLlifvl~v 29 (37)
T d2axtl1 16 SLYLGLLLILVLAL 29 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 45566666555544
No 8
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=2.90 E-value=6.8e+02 Score=20.48 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=25.0
Q ss_pred HHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHH
Q 043392 84 AFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQ 122 (496)
Q Consensus 84 ~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~ 122 (496)
++-++++.. +.+.|.++++.-|.++++++++..++.
T Consensus 7 ll~l~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~ 42 (248)
T d2r6gf1 7 VLGLLGLLV---GYLVVLMYAQGEYLFAITTLILSSAGL 42 (248)
T ss_dssp HHHHHHHHH---HHTHHHHHGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHcchHHHHHHHHHHHHheE
Confidence 334444433 667899999999998887776655554
No 9
>d1ciya3 f.1.3.1 (A:33-255) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Probab=2.89 E-value=4.6e+02 Score=21.07 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhCcChHHHHHHHhhh
Q 043392 407 FFGSVEFFISAALPFLRNLAALIGGI 432 (496)
Q Consensus 407 ~~~~~~~~iA~~iP~~~~v~~lvGa~ 432 (496)
..-+..++++.++|..+.++|+++-+
T Consensus 7 ~~~~~~~ll~~~iP~~g~~~~li~~l 32 (223)
T d1ciya3 7 SLSLTQFLLSEFVPGAGFVLGLVDII 32 (223)
T ss_dssp HHHHHHHHHHCCSSSHHHHHHHHHHT
T ss_pred HHHHHHHHhhhcCCchHHHHHHHHHH
Confidence 34467778888899999888877654
No 10
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.87 E-value=3.9e+02 Score=14.17 Aligned_cols=18 Identities=11% Similarity=0.257 Sum_probs=0.0
Q ss_pred cChhHHHHHHHHHHHHHH
Q 043392 106 LGWTWGIICLLLVFIWQL 123 (496)
Q Consensus 106 ~G~~~giill~~~~~l~~ 123 (496)
+|+++|.+=..+.|++..
T Consensus 7 ~GivlGlipiTl~Glfv~ 24 (30)
T d1q90g_ 7 CGIVLGLVPVTIAGLFVT 24 (30)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhHHHhhHHHHHHHHHHH
Done!