BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043394
         (90 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8VZU2|SY132_ARATH Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=1 SV=1
          Length = 304

 Score = 39.3 bits (90), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/30 (63%), Positives = 22/30 (73%)

Query: 17  QVTHAVDHVQLGTDALRTAKRLQRRSRKCM 46
           QV+ AVDHVQ G  AL+ AK LQ+ SRK M
Sbjct: 248 QVSSAVDHVQSGNTALQRAKSLQKNSRKWM 277


>sp|O64791|SY124_ARATH Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1
          Length = 303

 Score = 33.5 bits (75), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 17  QVTHAVDHVQLGTDALRTAKRLQRRSRKCMMIAIILLLVIAIIIVL 62
            V+ A   V+ GTD L+ A+  Q+ SRK    AI+L +V+  ++++
Sbjct: 247 HVSKASSFVRRGTDQLQDAREYQKSSRKWTCYAILLFIVVFALLLI 292


>sp|O70439|STX7_MOUSE Syntaxin-7 OS=Mus musculus GN=Stx7 PE=1 SV=3
          Length = 261

 Score = 32.0 bits (71), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 24  HVQLGTDALRTAKRLQRRSRKCMMIAIILLLVIAIIIVLAV 64
           HVQ     L  A   QR+SRK + I I +L+V  +II L V
Sbjct: 216 HVQQANQQLSRAADYQRKSRKTLCIIIFILVVRIVIICLIV 256


>sp|Q9SRV7|SY131_ARATH Putative syntaxin-131 OS=Arabidopsis thaliana GN=SYP131 PE=3 SV=1
          Length = 306

 Score = 30.8 bits (68), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 19/29 (65%)

Query: 18  VTHAVDHVQLGTDALRTAKRLQRRSRKCM 46
           V+ AVDHVQ G + L  A + Q+ SRK M
Sbjct: 250 VSSAVDHVQSGNNQLTKAVKSQKSSRKWM 278


>sp|Q24547|STX1A_DROME Syntaxin-1A OS=Drosophila melanogaster GN=Syx1A PE=1 SV=1
          Length = 291

 Score = 30.4 bits (67), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 28/48 (58%)

Query: 18  VTHAVDHVQLGTDALRTAKRLQRRSRKCMMIAIILLLVIAIIIVLAVA 65
           V HA+D+VQ  T   + A + Q ++R+  ++ +I L V+ I+    V+
Sbjct: 240 VEHAMDYVQTATQDTKKALKYQSKARRKKIMILICLTVLGILAASYVS 287


>sp|P32851|STX1A_RAT Syntaxin-1A OS=Rattus norvegicus GN=Stx1a PE=1 SV=1
          Length = 288

 Score = 29.6 bits (65), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%)

Query: 18  VTHAVDHVQLGTDALRTAKRLQRRSRKCMMIAIILLLVIAIIIVLAVA 65
           V HAVD+V+      + A + Q ++R+  ++ II  +++ III   + 
Sbjct: 237 VEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIIIASTIG 284


>sp|O35526|STX1A_MOUSE Syntaxin-1A OS=Mus musculus GN=Stx1a PE=1 SV=3
          Length = 288

 Score = 29.3 bits (64), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 27/48 (56%)

Query: 18  VTHAVDHVQLGTDALRTAKRLQRRSRKCMMIAIILLLVIAIIIVLAVA 65
           V HAVD+V+      + A + Q ++R+  ++ II  +++ III   + 
Sbjct: 237 VEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIIIASTIG 284


>sp|Q16623|STX1A_HUMAN Syntaxin-1A OS=Homo sapiens GN=STX1A PE=1 SV=1
          Length = 288

 Score = 29.3 bits (64), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 27/48 (56%)

Query: 18  VTHAVDHVQLGTDALRTAKRLQRRSRKCMMIAIILLLVIAIIIVLAVA 65
           V HAVD+V+      + A + Q ++R+  ++ II  +++ I+I   V 
Sbjct: 237 VEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIVIASTVG 284


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.329    0.137    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,296,013
Number of Sequences: 539616
Number of extensions: 682918
Number of successful extensions: 2697
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2645
Number of HSP's gapped (non-prelim): 52
length of query: 90
length of database: 191,569,459
effective HSP length: 60
effective length of query: 30
effective length of database: 159,192,499
effective search space: 4775774970
effective search space used: 4775774970
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)