Query 043394
Match_columns 90
No_of_seqs 110 out of 574
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 04:37:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0810 SNARE protein Syntaxin 99.6 1.1E-15 2.4E-20 119.3 4.6 63 4-70 233-295 (297)
2 KOG0811 SNARE protein PEP12/VA 99.4 1.6E-12 3.5E-17 100.6 6.6 59 5-67 208-266 (269)
3 COG5325 t-SNARE complex subuni 99.1 2.6E-10 5.6E-15 89.1 5.6 56 5-64 223-278 (283)
4 KOG0809 SNARE protein TLG2/Syn 99.0 3.4E-10 7.4E-15 89.1 4.9 49 16-64 253-301 (305)
5 COG5074 t-SNARE complex subuni 98.3 8.2E-07 1.8E-11 69.0 4.4 59 5-64 210-268 (280)
6 PF05739 SNARE: SNARE domain; 97.4 0.00026 5.6E-09 42.4 3.8 33 4-40 31-63 (63)
7 COG5074 t-SNARE complex subuni 95.0 0.049 1.1E-06 42.8 4.9 49 5-59 220-268 (280)
8 KOG3202 SNARE protein TLG1/Syn 95.0 0.077 1.7E-06 40.8 5.8 49 7-60 182-230 (235)
9 KOG3894 SNARE protein Syntaxin 94.4 0.057 1.2E-06 43.3 4.0 50 8-58 260-309 (316)
10 KOG0860 Synaptobrevin/VAMP-lik 94.0 0.26 5.7E-06 34.5 6.1 7 35-41 73-79 (116)
11 cd00193 t_SNARE Soluble NSF (N 93.8 0.054 1.2E-06 31.1 2.1 27 5-35 34-60 (60)
12 PF00957 Synaptobrevin: Synapt 93.7 0.45 9.8E-06 30.3 6.5 17 27-43 39-55 (89)
13 PF09753 Use1: Membrane fusion 93.1 0.48 1E-05 35.6 6.8 34 17-53 203-236 (251)
14 PF07423 DUF1510: Protein of u 92.1 0.22 4.9E-06 37.8 3.9 30 37-66 5-34 (217)
15 smart00397 t_SNARE Helical reg 91.7 0.15 3.4E-06 29.5 2.1 27 5-35 40-66 (66)
16 KOG0860 Synaptobrevin/VAMP-lik 91.4 0.83 1.8E-05 32.0 5.8 24 18-41 62-86 (116)
17 KOG0810 SNARE protein Syntaxin 89.4 0.54 1.2E-05 37.2 4.0 24 18-41 236-259 (297)
18 PF00957 Synaptobrevin: Synapt 89.2 3 6.6E-05 26.4 6.7 26 18-43 36-62 (89)
19 PF12273 RCR: Chitin synthesis 87.7 0.47 1E-05 32.5 2.3 22 44-65 1-22 (130)
20 PF10717 ODV-E18: Occlusion-de 86.4 1.2 2.6E-05 29.8 3.6 21 55-75 33-53 (85)
21 PF04505 Dispanin: Interferon- 85.4 0.67 1.4E-05 29.9 2.0 32 27-58 48-79 (82)
22 PF03904 DUF334: Domain of unk 84.9 4 8.6E-05 31.6 6.2 50 13-62 117-166 (230)
23 KOG0812 SNARE protein SED5/Syn 84.8 2.5 5.5E-05 34.0 5.3 44 16-59 262-305 (311)
24 KOG1666 V-SNARE [Intracellular 77.0 8.2 0.00018 29.8 5.5 25 17-41 164-188 (220)
25 PF13829 DUF4191: Domain of un 75.5 6.3 0.00014 30.3 4.6 25 29-53 10-34 (224)
26 PHA03240 envelope glycoprotein 74.1 3.2 6.9E-05 32.4 2.7 16 67-82 240-256 (258)
27 PF09889 DUF2116: Uncharacteri 73.5 12 0.00027 23.1 4.7 13 37-49 30-42 (59)
28 PF13250 DUF4041: Domain of un 69.7 5.5 0.00012 24.2 2.6 35 2-36 7-41 (56)
29 PF06072 Herpes_US9: Alphaherp 68.7 17 0.00037 22.8 4.6 22 27-48 10-33 (60)
30 KOG0811 SNARE protein PEP12/VA 68.0 15 0.00033 28.8 5.3 23 18-40 210-232 (269)
31 PF09753 Use1: Membrane fusion 65.7 22 0.00048 26.7 5.6 40 18-57 197-236 (251)
32 PRK13865 type IV secretion sys 65.4 39 0.00084 25.6 6.9 28 45-72 41-68 (229)
33 PF03100 CcmE: CcmE; InterPro 64.0 2.6 5.7E-05 29.0 0.3 8 39-46 2-9 (131)
34 PF13215 DUF4023: Protein of u 63.0 9.7 0.00021 21.9 2.5 24 18-41 1-24 (38)
35 PF13198 DUF4014: Protein of u 60.9 12 0.00026 24.3 2.9 14 36-49 7-20 (72)
36 PRK05696 fliL flagellar basal 60.4 5.3 0.00011 28.5 1.4 6 44-49 18-23 (170)
37 PF10027 DUF2269: Predicted in 60.3 26 0.00057 24.0 4.9 32 36-67 119-150 (150)
38 PF10819 DUF2564: Protein of u 59.9 16 0.00035 24.1 3.5 28 13-40 26-53 (79)
39 COG2332 CcmE Cytochrome c-type 59.4 11 0.00025 27.5 3.0 27 39-65 2-28 (153)
40 PF07423 DUF1510: Protein of u 59.1 11 0.00024 28.7 3.0 30 37-66 2-31 (217)
41 PF11752 DUF3309: Protein of u 58.4 7 0.00015 23.7 1.4 18 62-79 13-31 (49)
42 PF12273 RCR: Chitin synthesis 58.2 5.2 0.00011 27.2 1.0 15 49-63 3-17 (130)
43 PHA02975 hypothetical protein; 58.1 10 0.00022 24.5 2.2 9 3-11 16-24 (69)
44 PF00523 Fusion_gly: Fusion gl 57.1 5.6 0.00012 33.6 1.2 31 16-46 438-468 (490)
45 PRK13254 cytochrome c-type bio 56.8 13 0.00028 26.6 2.9 14 49-62 12-25 (148)
46 PF00517 GP41: Retroviral enve 56.8 13 0.00029 27.5 3.1 34 4-37 107-140 (204)
47 COG1580 FliL Flagellar basal b 55.8 10 0.00022 27.5 2.2 25 46-70 17-41 (159)
48 COG5325 t-SNARE complex subuni 55.8 34 0.00073 27.4 5.2 48 9-61 231-278 (283)
49 PF04888 SseC: Secretion syste 55.4 64 0.0014 24.6 6.7 35 8-42 22-56 (306)
50 PHA02844 putative transmembran 53.2 23 0.00049 23.2 3.3 9 3-11 16-24 (75)
51 PF05781 MRVI1: MRVI1 protein; 53.0 75 0.0016 27.5 7.2 19 17-35 454-472 (538)
52 PRK13872 conjugal transfer pro 52.8 63 0.0014 23.9 6.1 32 39-70 35-67 (228)
53 PHA02650 hypothetical protein; 52.5 23 0.00049 23.5 3.3 9 3-11 16-24 (81)
54 PF00523 Fusion_gly: Fusion gl 52.3 20 0.00043 30.4 3.6 42 6-53 439-480 (490)
55 PF09548 Spore_III_AB: Stage I 52.2 72 0.0016 22.6 6.1 27 19-45 127-153 (170)
56 PRK09510 tolA cell envelope in 51.3 24 0.00053 29.1 4.0 18 47-64 14-31 (387)
57 PF04790 Sarcoglycan_1: Sarcog 51.0 18 0.0004 28.1 3.1 9 74-82 50-58 (264)
58 KOG1693 emp24/gp25L/p24 family 50.6 90 0.002 24.0 6.7 26 16-41 134-159 (209)
59 PF12911 OppC_N: N-terminal TM 50.5 46 0.001 18.9 4.7 23 46-68 19-41 (56)
60 TIGR02833 spore_III_AB stage I 49.2 87 0.0019 22.4 6.2 26 21-46 129-154 (170)
61 PRK08307 stage III sporulation 48.8 89 0.0019 22.4 6.2 32 22-53 131-163 (171)
62 PLN03160 uncharacterized prote 47.4 13 0.00028 27.8 1.7 8 44-51 39-46 (219)
63 PF00664 ABC_membrane: ABC tra 47.2 86 0.0019 21.1 6.4 32 4-35 184-216 (275)
64 PHA02692 hypothetical protein; 47.1 21 0.00045 23.1 2.4 9 3-11 16-24 (70)
65 PF12575 DUF3753: Protein of u 46.4 17 0.00037 23.6 1.9 9 3-11 16-24 (72)
66 PF04888 SseC: Secretion syste 46.3 74 0.0016 24.2 5.8 27 23-49 33-59 (306)
67 PHA02819 hypothetical protein; 45.9 35 0.00076 22.1 3.3 9 3-11 16-24 (71)
68 PF12751 Vac7: Vacuolar segreg 45.7 20 0.00044 29.7 2.7 10 57-66 313-322 (387)
69 COG4698 Uncharacterized protei 45.6 22 0.00049 27.0 2.7 15 44-58 12-26 (197)
70 PHA03054 IMV membrane protein; 44.8 38 0.00081 22.0 3.3 9 3-11 16-24 (72)
71 PRK13887 conjugal transfer pro 44.8 98 0.0021 23.3 6.1 33 38-70 48-81 (250)
72 PF02255 PTS_IIA: PTS system, 44.3 46 0.00099 22.0 3.8 27 15-41 27-53 (96)
73 PF10779 XhlA: Haemolysin XhlA 44.2 75 0.0016 19.5 6.4 13 41-53 48-60 (71)
74 PRK07021 fliL flagellar basal 44.0 25 0.00053 24.9 2.6 11 42-52 13-23 (162)
75 PF07010 Endomucin: Endomucin; 43.1 38 0.00083 26.7 3.7 12 67-78 214-227 (259)
76 PF06072 Herpes_US9: Alphaherp 41.9 75 0.0016 19.9 4.2 37 19-57 9-45 (60)
77 KOG1666 V-SNARE [Intracellular 41.5 1.1E+02 0.0024 23.7 5.9 17 17-33 171-187 (220)
78 PF04780 DUF629: Protein of un 41.5 14 0.0003 31.3 1.1 49 3-51 11-61 (466)
79 PF09716 ETRAMP: Malarial earl 41.3 52 0.0011 21.2 3.7 25 37-61 45-70 (84)
80 PF05568 ASFV_J13L: African sw 41.0 38 0.00083 25.2 3.3 21 46-66 31-52 (189)
81 cd00215 PTS_IIA_lac PTS_IIA, P 40.8 49 0.0011 22.0 3.5 27 15-41 28-54 (97)
82 PF14967 FAM70: FAM70 protein 40.3 21 0.00045 29.0 2.0 41 33-73 15-55 (327)
83 PRK12785 fliL flagellar basal 39.8 8.4 0.00018 27.6 -0.3 10 43-52 22-31 (166)
84 PF06738 DUF1212: Protein of u 39.6 43 0.00093 23.5 3.3 43 5-48 65-107 (193)
85 PF06789 UPF0258: Uncharacteri 38.3 19 0.00042 26.5 1.4 11 33-43 121-131 (159)
86 COG3736 VirB8 Type IV secretor 38.0 1.4E+02 0.003 23.2 6.1 21 53-73 52-72 (239)
87 COG5353 Uncharacterized protei 37.9 12 0.00027 27.5 0.3 17 44-60 4-20 (161)
88 PF11807 DUF3328: Domain of un 37.7 42 0.00092 23.0 3.0 6 41-46 6-11 (217)
89 PF04238 DUF420: Protein of un 37.3 53 0.0011 23.0 3.4 13 70-82 60-72 (133)
90 PF08372 PRT_C: Plant phosphor 37.1 1E+02 0.0022 22.3 5.0 25 8-33 62-86 (156)
91 PHA02642 C-type lectin-like pr 36.7 32 0.00068 26.2 2.4 28 44-71 49-77 (216)
92 TIGR00823 EIIA-LAC phosphotran 34.8 65 0.0014 21.5 3.4 28 14-41 29-56 (99)
93 PHA02673 ORF109 EEV glycoprote 33.5 56 0.0012 24.1 3.1 14 32-45 18-31 (161)
94 PRK10454 PTS system N,N'-diace 33.4 72 0.0016 22.0 3.5 27 15-41 44-70 (115)
95 KOG2678 Predicted membrane pro 33.1 1.8E+02 0.0038 22.9 5.9 8 36-43 207-214 (244)
96 KOG3385 V-SNARE [Intracellular 32.5 1.3E+02 0.0027 21.3 4.6 38 19-58 74-111 (118)
97 PRK09591 celC cellobiose phosp 32.3 79 0.0017 21.3 3.5 27 15-41 33-59 (104)
98 TIGR00701 conserved hypothetic 32.1 23 0.00051 24.9 1.0 24 46-69 119-142 (142)
99 PF11837 DUF3357: Domain of un 32.0 15 0.00033 24.6 0.0 18 41-58 24-41 (106)
100 COG4640 Predicted membrane pro 31.8 59 0.0013 27.6 3.4 37 24-60 28-65 (465)
101 PRK01294 lipase chaperone; Pro 31.5 65 0.0014 25.7 3.5 26 48-73 6-31 (336)
102 PRK03784 vtamin B12-transporte 30.9 71 0.0015 25.5 3.6 16 32-47 4-19 (331)
103 PF14555 UBA_4: UBA-like domai 30.7 41 0.0009 18.6 1.7 35 4-38 1-35 (43)
104 PF03653 UPF0093: Uncharacteri 30.7 27 0.00059 24.5 1.1 23 46-68 125-147 (147)
105 PF10814 DUF2562: Protein of u 30.5 1.1E+02 0.0025 21.9 4.2 18 30-47 76-93 (133)
106 PF05546 She9_MDM33: She9 / Md 30.4 2.5E+02 0.0054 21.5 6.4 52 18-69 115-177 (207)
107 PF13721 SecD-TM1: SecD export 30.0 67 0.0014 21.3 2.9 25 42-66 4-28 (101)
108 PF14015 DUF4231: Protein of u 29.5 1.4E+02 0.003 18.9 4.2 16 33-48 9-24 (112)
109 KOG0082 G-protein alpha subuni 29.2 52 0.0011 26.9 2.6 34 1-34 60-93 (354)
110 PF06814 Lung_7-TM_R: Lung sev 28.9 2E+02 0.0043 21.8 5.6 26 25-50 209-234 (295)
111 PF05473 Herpes_UL45: UL45 pro 28.8 86 0.0019 23.2 3.5 20 64-83 73-92 (200)
112 PF04335 VirB8: VirB8 protein; 28.2 19 0.00042 25.3 0.0 16 33-48 8-23 (212)
113 TIGR01000 bacteriocin_acc bact 28.1 84 0.0018 25.4 3.6 15 32-46 6-20 (457)
114 PF09548 Spore_III_AB: Stage I 27.5 1.7E+02 0.0038 20.6 4.8 31 17-47 128-158 (170)
115 PRK15053 dpiB sensor histidine 27.4 1.3E+02 0.0028 23.9 4.5 10 44-53 19-28 (545)
116 PHA03164 hypothetical protein; 27.0 83 0.0018 21.0 2.8 22 37-58 49-70 (88)
117 PF13038 DUF3899: Domain of un 26.7 1.6E+02 0.0035 18.5 4.2 9 39-47 65-73 (92)
118 PHA02662 ORF131 putative membr 26.6 85 0.0018 24.4 3.2 38 44-81 186-225 (226)
119 KOG0871 Class 2 transcription 26.5 1.1E+02 0.0024 22.5 3.6 36 10-45 64-105 (156)
120 PF06143 Baculo_11_kDa: Baculo 25.6 1.1E+02 0.0023 20.3 3.1 7 30-36 20-26 (84)
121 PF09788 Tmemb_55A: Transmembr 25.1 70 0.0015 25.2 2.6 13 42-54 194-206 (256)
122 COG1766 fliF Flagellar basal b 24.5 2.3E+02 0.0051 24.4 5.8 17 31-47 8-25 (545)
123 PF10749 DUF2534: Protein of u 24.5 1E+02 0.0023 20.5 2.9 16 41-56 10-25 (85)
124 COG1447 CelC Phosphotransferas 24.4 1.4E+02 0.003 20.5 3.7 27 15-41 32-58 (105)
125 TIGR02794 tolA_full TolA prote 24.2 1E+02 0.0022 24.7 3.4 16 49-64 5-20 (346)
126 PF14155 DUF4307: Domain of un 23.6 78 0.0017 21.3 2.3 10 43-52 3-12 (112)
127 PLN02745 Putative pectinestera 23.5 78 0.0017 27.4 2.8 13 37-49 16-28 (596)
128 TIGR00247 conserved hypothetic 23.2 1.5E+02 0.0031 23.5 4.1 15 44-58 2-16 (342)
129 PF08990 Docking: Erythronolid 22.9 1.3E+02 0.0029 15.8 2.8 19 19-37 5-23 (27)
130 PF13376 OmdA: Bacteriocin-pro 22.9 96 0.0021 18.4 2.4 38 3-40 17-54 (63)
131 PF15106 TMEM156: TMEM156 prot 22.9 1.1E+02 0.0024 23.8 3.2 20 47-66 177-196 (226)
132 PRK15374 pathogenicity island 22.7 3E+02 0.0066 24.3 6.1 30 12-41 284-313 (593)
133 COG4068 Uncharacterized protei 22.7 2.1E+02 0.0046 18.1 4.4 18 26-43 27-44 (64)
134 KOG0859 Synaptobrevin/VAMP-lik 22.7 1.3E+02 0.0029 23.2 3.6 18 7-24 134-151 (217)
135 PF01299 Lamp: Lysosome-associ 22.7 89 0.0019 24.0 2.7 9 65-73 293-301 (306)
136 KOG4684 Uncharacterized conser 22.1 1.1E+02 0.0025 24.1 3.2 29 47-76 212-240 (275)
137 KOG0365 Beta subunit of farnes 21.7 1.5E+02 0.0032 25.0 3.9 46 7-52 56-108 (423)
138 PF03264 Cytochrom_NNT: NapC/N 21.0 33 0.00072 24.2 0.1 9 43-51 3-11 (173)
139 PF14221 DUF4330: Domain of un 21.0 55 0.0012 23.5 1.2 39 44-84 13-51 (168)
140 PF12166 DUF3595: Protein of u 20.9 1.5E+02 0.0032 23.7 3.7 25 15-39 27-53 (422)
141 PF14812 PBP1_TM: Transmembran 20.7 4.6 0.0001 26.6 -4.0 7 39-45 61-67 (81)
142 PF01407 Gemini_AL3: Geminivir 20.6 59 0.0013 22.9 1.3 21 6-26 92-112 (120)
143 KOG2927 Membrane component of 20.6 77 0.0017 26.3 2.1 25 44-68 189-213 (372)
144 cd07643 I-BAR_IMD_MIM Inverse 20.2 1.2E+02 0.0026 23.6 2.9 20 26-45 125-148 (231)
145 PF04202 Mfp-3: Foot protein 3 20.1 1.1E+02 0.0025 19.7 2.4 10 69-78 22-31 (71)
No 1
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.1e-15 Score=119.31 Aligned_cols=63 Identities=30% Similarity=0.511 Sum_probs=57.7
Q ss_pred hhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHhhhcccc
Q 043394 4 DEALINFRTISWMQVTHAVDHVQLGTDALRTAKRLQRRSRKCMMIAIILLLVIAIIIVLAVAIERAD 70 (90)
Q Consensus 4 ~~~~~~~~~~~~~NVe~A~~~Ve~A~~eL~kA~~yQKksRKk~ciiiiiviIIlliIil~vl~~~~~ 70 (90)
.|.+|+|+ .||++|.+||++|+.+|++|.+|||++|||+||++++++|+++++++++++||..
T Consensus 233 gEmvd~IE----~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~v~~i~~~~~~ 295 (297)
T KOG0810|consen 233 GEMVDRIE----NNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVLVVVIVVPLVL 295 (297)
T ss_pred HhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHHhhhhcccccc
Confidence 47788888 8999999999999999999999999999999999999999998888888888753
No 2
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=1.6e-12 Score=100.59 Aligned_cols=59 Identities=31% Similarity=0.349 Sum_probs=52.4
Q ss_pred hhhhcccccccchHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHhhhc
Q 043394 5 EALINFRTISWMQVTHAVDHVQLGTDALRTAKRLQRRSRKCMMIAIILLLVIAIIIVLAVAIE 67 (90)
Q Consensus 5 ~~~~~~~~~~~~NVe~A~~~Ve~A~~eL~kA~~yQKksRKk~ciiiiiviIIlliIil~vl~~ 67 (90)
|..|+|+ +||++|+++|++|+++|.||.+||+++|||+|+++++++++++++.++++..
T Consensus 208 ~~VDsIe----~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~v~~~v~lii~l~i~~~ 266 (269)
T KOG0811|consen 208 ELVDSIE----ANVENASVNVEQGTENLRKAAKYQRKARKKKCILLLVGGPVGLIIGLIIAGI 266 (269)
T ss_pred hHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHh
Confidence 4567777 7999999999999999999999999999999999999888888888777654
No 3
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.06 E-value=2.6e-10 Score=89.08 Aligned_cols=56 Identities=23% Similarity=0.460 Sum_probs=49.9
Q ss_pred hhhhcccccccchHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHh
Q 043394 5 EALINFRTISWMQVTHAVDHVQLGTDALRTAKRLQRRSRKCMMIAIILLLVIAIIIVLAV 64 (90)
Q Consensus 5 ~~~~~~~~~~~~NVe~A~~~Ve~A~~eL~kA~~yQKksRKk~ciiiiiviIIlliIil~v 64 (90)
|+.|||+ +|+++++++++.|++||.||..|||+++||..|++++++|+++++.+++
T Consensus 223 ~lVdrID----~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Llil~vv~lfv~l~~ 278 (283)
T COG5325 223 ELVDRID----FNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLILLVVLLFVSLIK 278 (283)
T ss_pred hhhhHHh----hhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHHHHHHHHHHHHHH
Confidence 6778888 8999999999999999999999999999999888888888877776644
No 4
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=3.4e-10 Score=89.09 Aligned_cols=49 Identities=29% Similarity=0.488 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHh
Q 043394 16 MQVTHAVDHVQLGTDALRTAKRLQRRSRKCMMIAIILLLVIAIIIVLAV 64 (90)
Q Consensus 16 ~NVe~A~~~Ve~A~~eL~kA~~yQKksRKk~ciiiiiviIIlliIil~v 64 (90)
+|||++..+|++|.+||.||..|||+.+|++|+++++++|+++++++++
T Consensus 253 yNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L~l~ii~llvllil 301 (305)
T KOG0809|consen 253 YNVEQTQVRVEDALKELHKAERYQKRNKKMKVILMLTLLIIALLVLLIL 301 (305)
T ss_pred cchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHHHHHHHHHHHHHHh
Confidence 6999999999999999999999999999999998888888877776643
No 5
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=98.30 E-value=8.2e-07 Score=69.03 Aligned_cols=59 Identities=27% Similarity=0.316 Sum_probs=44.0
Q ss_pred hhhhcccccccchHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHh
Q 043394 5 EALINFRTISWMQVTHAVDHVQLGTDALRTAKRLQRRSRKCMMIAIILLLVIAIIIVLAV 64 (90)
Q Consensus 5 ~~~~~~~~~~~~NVe~A~~~Ve~A~~eL~kA~~yQKksRKk~ciiiiiviIIlliIil~v 64 (90)
||-.|...|.- |++.+..+|++|+.++.+|.+|.|++||++++|..++++++++++.++
T Consensus 210 eq~e~Vd~I~~-~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~iii~viv~vv 268 (280)
T COG5074 210 EQQENVDVIDK-NVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFIIIIVIVVVV 268 (280)
T ss_pred hhcchHHHHHh-hHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHHHHHHHHHHH
Confidence 45566666654 999999999999999999999999999777555544444444444333
No 6
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=97.40 E-value=0.00026 Score=42.35 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=30.4
Q ss_pred hhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 043394 4 DEALINFRTISWMQVTHAVDHVQLGTDALRTAKRLQR 40 (90)
Q Consensus 4 ~~~~~~~~~~~~~NVe~A~~~Ve~A~~eL~kA~~yQK 40 (90)
++.|++++ .|+++|.+++++|+++|.+|.+|||
T Consensus 31 ~~~ld~i~----~~vd~~~~~l~~~~~~l~ka~~~~k 63 (63)
T PF05739_consen 31 NEMLDRIE----DNVDRANENLKKGNKKLKKALKYQK 63 (63)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46788888 8999999999999999999999997
No 7
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=95.03 E-value=0.049 Score=42.79 Aligned_cols=49 Identities=16% Similarity=0.373 Sum_probs=31.6
Q ss_pred hhhhcccccccchHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHH
Q 043394 5 EALINFRTISWMQVTHAVDHVQLGTDALRTAKRLQRRSRKCMMIAIILLLVIAII 59 (90)
Q Consensus 5 ~~~~~~~~~~~~NVe~A~~~Ve~A~~eL~kA~~yQKksRKk~ciiiiiviIIlli 59 (90)
.++.|-+ .|++.+..++++|.+..++|+ .||.|-|.+|++++++|++++
T Consensus 220 ~~~~~~~----~n~~~g~~h~d~AvksaRaaR--kkki~c~gI~~iii~viv~vv 268 (280)
T COG5074 220 KNVEDAQ----ENVEQGVGHTDKAVKSARAAR--KKKIRCYGICFIIIIVIVVVV 268 (280)
T ss_pred hhHhhHH----hhHHHhhhhHHHHHHHHHHHH--hcceehhhhHHHHHHHHHHHH
Confidence 3455555 599999999999988855543 345555655555554444444
No 8
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.98 E-value=0.077 Score=40.81 Aligned_cols=49 Identities=8% Similarity=0.145 Sum_probs=30.6
Q ss_pred hhcccccccchHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH
Q 043394 7 LINFRTISWMQVTHAVDHVQLGTDALRTAKRLQRRSRKCMMIAIILLLVIAIII 60 (90)
Q Consensus 7 ~~~~~~~~~~NVe~A~~~Ve~A~~eL~kA~~yQKksRKk~ciiiiiviIIlliI 60 (90)
|||+. +-++.+......+.+.|.+=.+ .++.+..||++++++.++++++
T Consensus 182 lDdl~----~e~d~t~srl~~~~~~l~~v~~-~~s~~~~~~~il~l~~~~~lvv 230 (235)
T KOG3202|consen 182 LDDLD----NEMDRTESRLDRVMKRLAKVNR-MASQCSQWCAILLLVGLLLLVV 230 (235)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHH-HhccccchhHHHHHHHHHHHHH
Confidence 45555 5678888888889999988877 4444444444444444444333
No 9
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.43 E-value=0.057 Score=43.33 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=39.6
Q ss_pred hcccccccchHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH
Q 043394 8 INFRTISWMQVTHAVDHVQLGTDALRTAKRLQRRSRKCMMIAIILLLVIAI 58 (90)
Q Consensus 8 ~~~~~~~~~NVe~A~~~Ve~A~~eL~kA~~yQKksRKk~ciiiiiviIIll 58 (90)
.||+. ++.+..+|..++++||+++.||...-.+.|+|..+.+++.-..++
T Consensus 260 ~~Id~-I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llvlsf~lL 309 (316)
T KOG3894|consen 260 QNIDL-IHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLVLSFSLL 309 (316)
T ss_pred HHHHH-HHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 45553 356899999999999999999999999999998877666544443
No 10
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.97 E-value=0.26 Score=34.50 Aligned_cols=7 Identities=14% Similarity=0.487 Sum_probs=2.9
Q ss_pred HHHHhhh
Q 043394 35 AKRLQRR 41 (90)
Q Consensus 35 A~~yQKk 41 (90)
|..+.++
T Consensus 73 as~F~~~ 79 (116)
T KOG0860|consen 73 ASQFEKT 79 (116)
T ss_pred HHHHHHH
Confidence 3444443
No 11
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=93.81 E-value=0.054 Score=31.06 Aligned_cols=27 Identities=26% Similarity=0.214 Sum_probs=23.9
Q ss_pred hhhhcccccccchHHHHHHHHHHHHHHHHHH
Q 043394 5 EALINFRTISWMQVTHAVDHVQLGTDALRTA 35 (90)
Q Consensus 5 ~~~~~~~~~~~~NVe~A~~~Ve~A~~eL~kA 35 (90)
|.|++++ .|++++..+++.|.++|.+|
T Consensus 34 ~~ld~i~----~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 34 ELLDRIE----DNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHhcC
Confidence 5677787 89999999999999999875
No 12
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=93.70 E-value=0.45 Score=30.25 Aligned_cols=17 Identities=12% Similarity=0.270 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhhhcc
Q 043394 27 LGTDALRTAKRLQRRSR 43 (90)
Q Consensus 27 ~A~~eL~kA~~yQKksR 43 (90)
++..=...|..++|+++
T Consensus 39 kt~~L~~~a~~F~k~a~ 55 (89)
T PF00957_consen 39 KTEELSDNAKQFKKNAK 55 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHH
Confidence 33333344555555443
No 13
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=93.08 E-value=0.48 Score=35.64 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 043394 17 QVTHAVDHVQLGTDALRTAKRLQRRSRKCMMIAIILL 53 (90)
Q Consensus 17 NVe~A~~~Ve~A~~eL~kA~~yQKksRKk~ciiiiiv 53 (90)
.+++..+.++.....| .+|.+++.+|+.|+++++
T Consensus 203 ~~d~n~~~l~~~~~rl---~~~~~~~~~~~~~~~i~~ 236 (251)
T PF09753_consen 203 GLDRNLSSLKRESKRL---KEHSSKSWGCWTWLMIFV 236 (251)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHhcccHHHHHHHHH
Confidence 3444444444444444 456666666554444443
No 14
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=92.11 E-value=0.22 Score=37.82 Aligned_cols=30 Identities=23% Similarity=0.425 Sum_probs=13.3
Q ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHhhh
Q 043394 37 RLQRRSRKCMMIAIILLLVIAIIIVLAVAI 66 (90)
Q Consensus 37 ~yQKksRKk~ciiiiiviIIlliIil~vl~ 66 (90)
+++|++|..+++=++|++|+++|++++..+
T Consensus 5 ~r~KrRK~N~iLNiaI~IV~lLIiiva~~l 34 (217)
T PF07423_consen 5 QRQKRRKTNKILNIAIGIVSLLIIIVAYQL 34 (217)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHhhhh
Confidence 444444444444344444444444443333
No 15
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=91.74 E-value=0.15 Score=29.48 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=23.0
Q ss_pred hhhhcccccccchHHHHHHHHHHHHHHHHHH
Q 043394 5 EALINFRTISWMQVTHAVDHVQLGTDALRTA 35 (90)
Q Consensus 5 ~~~~~~~~~~~~NVe~A~~~Ve~A~~eL~kA 35 (90)
|.|++++ .|++++..+++.|.++|.+|
T Consensus 40 ~~ld~i~----~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 40 EQLDRIE----DNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred HHHHHHH----HhHHHHHHHHHHHHHHHhcC
Confidence 5567777 79999999999999999875
No 16
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.41 E-value=0.83 Score=32.00 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhhh
Q 043394 18 VTHAVDHVQLGTDALR-TAKRLQRR 41 (90)
Q Consensus 18 Ve~A~~~Ve~A~~eL~-kA~~yQKk 41 (90)
+++=++..+.+..+-+ .|.+-+|+
T Consensus 62 L~drad~L~~~as~F~~~A~klkrk 86 (116)
T KOG0860|consen 62 LDDRADQLQAGASQFEKTAVKLKRK 86 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443 34444444
No 17
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.45 E-value=0.54 Score=37.18 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 043394 18 VTHAVDHVQLGTDALRTAKRLQRR 41 (90)
Q Consensus 18 Ve~A~~~Ve~A~~eL~kA~~yQKk 41 (90)
|..--.+|+.|.....+|...=++
T Consensus 236 vd~IE~nV~~A~~~V~~g~~~~~k 259 (297)
T KOG0810|consen 236 VDRIENNVENAVDYVEQGVDHLKK 259 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555554444443
No 18
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=89.17 E-value=3 Score=26.38 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhhhcc
Q 043394 18 VTHAVDHVQLGTDALR-TAKRLQRRSR 43 (90)
Q Consensus 18 Ve~A~~~Ve~A~~eL~-kA~~yQKksR 43 (90)
+++=++..++...+.+ +|.+-+++..
T Consensus 36 L~~kt~~L~~~a~~F~k~a~~l~r~~~ 62 (89)
T PF00957_consen 36 LEDKTEELSDNAKQFKKNAKKLKRKMW 62 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3334444444444444 5666655544
No 19
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=87.74 E-value=0.47 Score=32.45 Aligned_cols=22 Identities=14% Similarity=0.473 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q 043394 44 KCMMIAIILLLVIAIIIVLAVA 65 (90)
Q Consensus 44 Kk~ciiiiiviIIlliIil~vl 65 (90)
||.+++++|+++++++++..+.
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~ 22 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCH 22 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHH
Confidence 5666666665555555544343
No 20
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=86.42 E-value=1.2 Score=29.75 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=10.1
Q ss_pred HHHHHHHHHhhhcccccccee
Q 043394 55 VIAIIIVLAVAIERADTEAVV 75 (90)
Q Consensus 55 IIlliIil~vl~~~~~~~~~~ 75 (90)
++++|+++++++.++.++...
T Consensus 33 vLVIIiLlImlfqsSS~~~~s 53 (85)
T PF10717_consen 33 VLVIIILLIMLFQSSSNGNSS 53 (85)
T ss_pred HHHHHHHHHHHHhccCCCCCC
Confidence 334444455556555544433
No 21
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=85.44 E-value=0.67 Score=29.90 Aligned_cols=32 Identities=34% Similarity=0.518 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH
Q 043394 27 LGTDALRTAKRLQRRSRKCMMIAIILLLVIAI 58 (90)
Q Consensus 27 ~A~~eL~kA~~yQKksRKk~ciiiiiviIIll 58 (90)
....+.+.|+++-+++|+|-.+-+++.+++++
T Consensus 48 ~~~Gd~~~A~~aS~~Ak~~~~ia~~~g~~~~i 79 (82)
T PF04505_consen 48 YAAGDYEGARRASRKAKKWSIIAIIIGIVIII 79 (82)
T ss_pred HHCCCHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 34457889999999998887666655544433
No 22
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=84.88 E-value=4 Score=31.65 Aligned_cols=50 Identities=12% Similarity=0.206 Sum_probs=36.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH
Q 043394 13 ISWMQVTHAVDHVQLGTDALRTAKRLQRRSRKCMMIAIILLLVIAIIIVL 62 (90)
Q Consensus 13 ~~~~NVe~A~~~Ve~A~~eL~kA~~yQKksRKk~ciiiiiviIIlliIil 62 (90)
+.-.++....+..++.-++++++.+.-+++-|++|.-+...+.+++++++
T Consensus 117 ~~~~ei~k~r~e~~~ml~evK~~~E~y~k~~k~~~~gi~aml~Vf~LF~l 166 (230)
T PF03904_consen 117 IAQNEIKKVREENKSMLQEVKQSHEKYQKRQKSMYKGIGAMLFVFMLFAL 166 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34467778888999999999999988888888888665554444443333
No 23
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.82 E-value=2.5 Score=33.96 Aligned_cols=44 Identities=14% Similarity=0.066 Sum_probs=30.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHH
Q 043394 16 MQVTHAVDHVQLGTDALRTAKRLQRRSRKCMMIAIILLLVIAII 59 (90)
Q Consensus 16 ~NVe~A~~~Ve~A~~eL~kA~~yQKksRKk~ciiiiiviIIlli 59 (90)
.|++.+..+++.|+.+|.|--+.=++.|.-+.=+..+++++.++
T Consensus 262 ~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFflv 305 (311)
T KOG0812|consen 262 DNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFLV 305 (311)
T ss_pred hcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 49999999999999999987666666664443333333333333
No 24
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.01 E-value=8.2 Score=29.76 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh
Q 043394 17 QVTHAVDHVQLGTDALRTAKRLQRR 41 (90)
Q Consensus 17 NVe~A~~~Ve~A~~eL~kA~~yQKk 41 (90)
.+++|.+...+...+|.++.+.=+.
T Consensus 164 ~L~rar~rL~~td~~lgkS~kiL~t 188 (220)
T KOG1666|consen 164 QLERARERLRETDANLGKSRKILTT 188 (220)
T ss_pred HHHHHHHHHHhchhhhhHHHHHHHH
Confidence 5666666666677777777665443
No 25
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=75.55 E-value=6.3 Score=30.29 Aligned_cols=25 Identities=8% Similarity=0.110 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhcchhHHHHHHHH
Q 043394 29 TDALRTAKRLQRRSRKCMMIAIILL 53 (90)
Q Consensus 29 ~~eL~kA~~yQKksRKk~ciiiiiv 53 (90)
-+|+.+|-+++++.-+|..++++..
T Consensus 10 ~~Qi~q~y~~trk~dp~l~~~ml~a 34 (224)
T PF13829_consen 10 RKQIWQAYKMTRKEDPKLPWLMLGA 34 (224)
T ss_pred HHHHHHHHHHHHHHCcchHHHHHHH
Confidence 4789999999999998875554443
No 26
>PHA03240 envelope glycoprotein M; Provisional
Probab=74.11 E-value=3.2 Score=32.45 Aligned_cols=16 Identities=6% Similarity=0.071 Sum_probs=9.6
Q ss_pred ccccccc-eecCCccee
Q 043394 67 ERADTEA-VVGPGALRT 82 (90)
Q Consensus 67 ~~~~~~~-~~~~~~~~~ 82 (90)
.|....+ +-|++++-+
T Consensus 240 Kw~~~k~ly~~t~~~~~ 256 (258)
T PHA03240 240 KWDLHGSLYAGTDGFPA 256 (258)
T ss_pred HHhhhcceecccCCCCC
Confidence 3455555 677777754
No 27
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=73.47 E-value=12 Score=23.11 Aligned_cols=13 Identities=38% Similarity=0.439 Sum_probs=5.0
Q ss_pred HHhhhcchhHHHH
Q 043394 37 RLQRRSRKCMMIA 49 (90)
Q Consensus 37 ~yQKksRKk~cii 49 (90)
+.||+.+|...++
T Consensus 30 k~qk~~~~~~~i~ 42 (59)
T PF09889_consen 30 KRQKRMRKTQYIF 42 (59)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444333333
No 28
>PF13250 DUF4041: Domain of unknown function (DUF4041)
Probab=69.75 E-value=5.5 Score=24.19 Aligned_cols=35 Identities=9% Similarity=0.213 Sum_probs=30.0
Q ss_pred CChhhhhcccccccchHHHHHHHHHHHHHHHHHHH
Q 043394 2 FNDEALINFRTISWMQVTHAVDHVQLGTDALRTAK 36 (90)
Q Consensus 2 ~~~~~~~~~~~~~~~NVe~A~~~Ve~A~~eL~kA~ 36 (90)
||.|.=.-+..+.|.|++......+++-+++.+--
T Consensus 7 FN~EcD~~i~kv~~~Ni~~~~~rI~ksf~~iNkl~ 41 (56)
T PF13250_consen 7 FNGECDAAISKVKYNNIDTMEKRIEKSFEQINKLG 41 (56)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHcC
Confidence 77777777888999999999999999999988643
No 29
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=68.66 E-value=17 Score=22.81 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHh--hhcchhHHH
Q 043394 27 LGTDALRTAKRLQ--RRSRKCMMI 48 (90)
Q Consensus 27 ~A~~eL~kA~~yQ--KksRKk~ci 48 (90)
.|+.=|.+--++| ++.||+.|.
T Consensus 10 TA~~FL~RvGr~q~~~r~RrRrc~ 33 (60)
T PF06072_consen 10 TATEFLRRVGRQQHASRRRRRRCR 33 (60)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444455544555 233444454
No 30
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.98 E-value=15 Score=28.80 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 043394 18 VTHAVDHVQLGTDALRTAKRLQR 40 (90)
Q Consensus 18 Ve~A~~~Ve~A~~eL~kA~~yQK 40 (90)
|++-.++|+.+..+.+.|.+.=+
T Consensus 210 VDsIe~nve~a~~nveqg~~~L~ 232 (269)
T KOG0811|consen 210 VDSIEANVENASVNVEQGTENLR 232 (269)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666665554433
No 31
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=65.68 E-value=22 Score=26.67 Aligned_cols=40 Identities=5% Similarity=0.091 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Q 043394 18 VTHAVDHVQLGTDALRTAKRLQRRSRKCMMIAIILLLVIA 57 (90)
Q Consensus 18 Ve~A~~~Ve~A~~eL~kA~~yQKksRKk~ciiiiiviIIl 57 (90)
++.+...+++-...|..+...-+..+++.+.++..+++++
T Consensus 197 L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~~~i~~ 236 (251)
T PF09753_consen 197 LDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTWLMIFV 236 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 5667777777777888887776666655554444433333
No 32
>PRK13865 type IV secretion system protein VirB8; Provisional
Probab=65.40 E-value=39 Score=25.62 Aligned_cols=28 Identities=11% Similarity=0.055 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccc
Q 043394 45 CMMIAIILLLVIAIIIVLAVAIERADTE 72 (90)
Q Consensus 45 k~ciiiiiviIIlliIil~vl~~~~~~~ 72 (90)
|....+.+++.++.++.++.+.|.+...
T Consensus 41 w~va~~~~~~~~~~~~Av~~l~PLKt~~ 68 (229)
T PRK13865 41 AAVAGIAVAGNVAQAFAIATMVPLEKLV 68 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCcce
Confidence 4433334444445555566677766543
No 33
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=63.99 E-value=2.6 Score=29.03 Aligned_cols=8 Identities=25% Similarity=0.725 Sum_probs=0.0
Q ss_pred hhhcchhH
Q 043394 39 QRRSRKCM 46 (90)
Q Consensus 39 QKksRKk~ 46 (90)
|+++||++
T Consensus 2 ~~~~~rl~ 9 (131)
T PF03100_consen 2 KRRKKRLI 9 (131)
T ss_dssp --------
T ss_pred Ccceeehh
Confidence 44444444
No 34
>PF13215 DUF4023: Protein of unknown function (DUF4023)
Probab=62.96 E-value=9.7 Score=21.94 Aligned_cols=24 Identities=4% Similarity=0.151 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 043394 18 VTHAVDHVQLGTDALRTAKRLQRR 41 (90)
Q Consensus 18 Ve~A~~~Ve~A~~eL~kA~~yQKk 41 (90)
+|+|.++|++-++.-+|+.+.++.
T Consensus 1 MenT~efv~Kl~e~Q~K~e~Nk~~ 24 (38)
T PF13215_consen 1 MENTHEFVEKLNETQEKQEKNKKH 24 (38)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999888774
No 35
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=60.90 E-value=12 Score=24.34 Aligned_cols=14 Identities=43% Similarity=0.536 Sum_probs=9.2
Q ss_pred HHHhhhcchhHHHH
Q 043394 36 KRLQRRSRKCMMIA 49 (90)
Q Consensus 36 ~~yQKksRKk~cii 49 (90)
..|-|+||+.-+..
T Consensus 7 k~Y~rrSr~~efLF 20 (72)
T PF13198_consen 7 KEYPRRSRKTEFLF 20 (72)
T ss_pred HHccchhHHHHHHH
Confidence 46778888776533
No 36
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=60.40 E-value=5.3 Score=28.53 Aligned_cols=6 Identities=33% Similarity=0.495 Sum_probs=2.2
Q ss_pred hhHHHH
Q 043394 44 KCMMIA 49 (90)
Q Consensus 44 Kk~cii 49 (90)
|+++++
T Consensus 18 kkliii 23 (170)
T PRK05696 18 KKLIII 23 (170)
T ss_pred eeEEee
Confidence 333333
No 37
>PF10027 DUF2269: Predicted integral membrane protein (DUF2269); InterPro: IPR018729 Members of this family of bacterial hypothetical integral membrane proteins have no known function.
Probab=60.28 E-value=26 Score=23.97 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=20.5
Q ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHhhhc
Q 043394 36 KRLQRRSRKCMMIAIILLLVIAIIIVLAVAIE 67 (90)
Q Consensus 36 ~~yQKksRKk~ciiiiiviIIlliIil~vl~~ 67 (90)
.+|++..|++..+-.+..+..++++.+-+.||
T Consensus 119 ~~y~~~~~~~~~~g~~~~~~~~~i~~LMV~KP 150 (150)
T PF10027_consen 119 PEYKRLFRRWFILGWIAFLLLVVIVVLMVFKP 150 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 37888888887666555555555555556554
No 38
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=59.90 E-value=16 Score=24.09 Aligned_cols=28 Identities=25% Similarity=0.224 Sum_probs=23.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhh
Q 043394 13 ISWMQVTHAVDHVQLGTDALRTAKRLQR 40 (90)
Q Consensus 13 ~~~~NVe~A~~~Ve~A~~eL~kA~~yQK 40 (90)
..-..+++|..-|+.|+.+|.+|.+++-
T Consensus 26 mdp~~Le~A~qAve~Ar~ql~~a~~~at 53 (79)
T PF10819_consen 26 MDPDQLEHATQAVEDAREQLSQAKSHAT 53 (79)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445688999999999999999998874
No 39
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=59.41 E-value=11 Score=27.54 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=14.7
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHhh
Q 043394 39 QRRSRKCMMIAIILLLVIAIIIVLAVA 65 (90)
Q Consensus 39 QKksRKk~ciiiiiviIIlliIil~vl 65 (90)
+++.|+++.++++++..+.+.+.+++.
T Consensus 2 n~r~r~Rl~~il~~~a~l~~a~~l~Ly 28 (153)
T COG2332 2 NRRRRKRLWIILAGLAGLALAVGLVLY 28 (153)
T ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 445455555555555566665555443
No 40
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=59.09 E-value=11 Score=28.67 Aligned_cols=30 Identities=13% Similarity=0.305 Sum_probs=18.5
Q ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHhhh
Q 043394 37 RLQRRSRKCMMIAIILLLVIAIIIVLAVAI 66 (90)
Q Consensus 37 ~yQKksRKk~ciiiiiviIIlliIil~vl~ 66 (90)
++|++.++++-=.++=++|.+++++++++.
T Consensus 2 Rf~~r~KrRK~N~iLNiaI~IV~lLIiiva 31 (217)
T PF07423_consen 2 RFQQRQKRRKTNKILNIAIGIVSLLIIIVA 31 (217)
T ss_pred chhHHHHhhhhhhhHHHHHHHHHHHHHHHh
Confidence 566777777776666666666655444443
No 41
>PF11752 DUF3309: Protein of unknown function (DUF3309); InterPro: IPR021738 This family is conserved in bacteria but its function is not known.
Probab=58.37 E-value=7 Score=23.66 Aligned_cols=18 Identities=11% Similarity=0.160 Sum_probs=8.8
Q ss_pred HHhhhccccccc-eecCCc
Q 043394 62 LAVAIERADTEA-VVGPGA 79 (90)
Q Consensus 62 l~vl~~~~~~~~-~~~~~~ 79 (90)
+..+..|..+.+ +++|.+
T Consensus 13 igalP~wp~sr~wGy~PsG 31 (49)
T PF11752_consen 13 IGALPTWPYSRGWGYGPSG 31 (49)
T ss_pred HhcCCCCCCCCCCCcCCcc
Confidence 334445554444 566654
No 42
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=58.23 E-value=5.2 Score=27.24 Aligned_cols=15 Identities=20% Similarity=0.629 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 043394 49 AIILLLVIAIIIVLA 63 (90)
Q Consensus 49 iiiiviIIlliIil~ 63 (90)
++++++|++++++++
T Consensus 3 ~l~~iii~~i~l~~~ 17 (130)
T PF12273_consen 3 VLFAIIIVAILLFLF 17 (130)
T ss_pred eeHHHHHHHHHHHHH
Confidence 344444444444443
No 43
>PHA02975 hypothetical protein; Provisional
Probab=58.06 E-value=10 Score=24.48 Aligned_cols=9 Identities=33% Similarity=0.538 Sum_probs=5.9
Q ss_pred Chhhhhccc
Q 043394 3 NDEALINFR 11 (90)
Q Consensus 3 ~~~~~~~~~ 11 (90)
+||...||-
T Consensus 16 ~DdDF~nFI 24 (69)
T PHA02975 16 NDSDFEDFI 24 (69)
T ss_pred ChHHHHHHH
Confidence 567777765
No 44
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=57.12 E-value=5.6 Score=33.61 Aligned_cols=31 Identities=6% Similarity=0.140 Sum_probs=21.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhcchhH
Q 043394 16 MQVTHAVDHVQLGTDALRTAKRLQRRSRKCM 46 (90)
Q Consensus 16 ~NVe~A~~~Ve~A~~eL~kA~~yQKksRKk~ 46 (90)
.++.++.+.++++...|+++.+.=.+..++.
T Consensus 438 ~eL~~vn~sL~~A~~~L~~Sn~iL~~v~~~~ 468 (490)
T PF00523_consen 438 SELGQVNNSLNNAKDLLDKSNQILDSVNPGI 468 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTT---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3667777778888888888888777766553
No 45
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=56.78 E-value=13 Score=26.57 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 043394 49 AIILLLVIAIIIVL 62 (90)
Q Consensus 49 iiiiviIIlliIil 62 (90)
++.+++++..+..+
T Consensus 12 ~~~~~~~~~~~~~L 25 (148)
T PRK13254 12 ILGALAALGLAVAL 25 (148)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 46
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=56.78 E-value=13 Score=27.47 Aligned_cols=34 Identities=9% Similarity=0.145 Sum_probs=23.1
Q ss_pred hhhhhcccccccchHHHHHHHHHHHHHHHHHHHH
Q 043394 4 DEALINFRTISWMQVTHAVDHVQLGTDALRTAKR 37 (90)
Q Consensus 4 ~~~~~~~~~~~~~NVe~A~~~Ve~A~~eL~kA~~ 37 (90)
|++.+|.+.-.+.-++++...-++..+++.+-.+
T Consensus 107 ~~~i~~~~~~i~~ll~~a~~qqe~n~~~l~~Ld~ 140 (204)
T PF00517_consen 107 EKEISNYTGNIYNLLEEAQNQQEKNEQDLLKLDS 140 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcccHHHHHHHHHHHHhchhhhhhhhcCCcH
Confidence 5667777766666677777777777776665544
No 47
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=55.79 E-value=10 Score=27.46 Aligned_cols=25 Identities=8% Similarity=0.118 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccc
Q 043394 46 MMIAIILLLVIAIIIVLAVAIERAD 70 (90)
Q Consensus 46 ~ciiiiiviIIlliIil~vl~~~~~ 70 (90)
..+++++++++++++.......|..
T Consensus 17 ~~~I~liv~ivl~~~a~~~~~~~~~ 41 (159)
T COG1580 17 SLWILLIVLIVLLALAGAGYFFWFG 41 (159)
T ss_pred eeehHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444444444444444444433
No 48
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=55.75 E-value=34 Score=27.36 Aligned_cols=48 Identities=15% Similarity=0.313 Sum_probs=30.7
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHH
Q 043394 9 NFRTISWMQVTHAVDHVQLGTDALRTAKRLQRRSRKCMMIAIILLLVIAIIIV 61 (90)
Q Consensus 9 ~~~~~~~~NVe~A~~~Ve~A~~eL~kA~~yQKksRKk~ciiiiiviIIlliIi 61 (90)
|+++..- |..+|....++|...-+++ ++.|...++++++++.+..+++
T Consensus 231 Ni~~t~~-n~k~A~kEL~kA~~hqrrt----~k~~~~~Llil~vv~lfv~l~~ 278 (283)
T COG5325 231 NIENTSD-NLKNANKELEKAPAHQRRT----KKCRFYLLLILLVVLLFVSLIK 278 (283)
T ss_pred hhhhhhH-HHHhhHHHHHHhHHHHhhh----ccchhhHHHHHHHHHHHHHHHH
Confidence 4444444 8889999999988887655 4556666555555554444433
No 49
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=55.43 E-value=64 Score=24.58 Aligned_cols=35 Identities=17% Similarity=0.072 Sum_probs=23.3
Q ss_pred hcccccccchHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043394 8 INFRTISWMQVTHAVDHVQLGTDALRTAKRLQRRS 42 (90)
Q Consensus 8 ~~~~~~~~~NVe~A~~~Ve~A~~eL~kA~~yQKks 42 (90)
..++.....+..+..++-++-.++.++|.+-||..
T Consensus 22 ~~~~~~~~~~~~~~~e~~~~~~e~~~kaeeaqK~G 56 (306)
T PF04888_consen 22 EQIERASEAQEKKAEEKAEEIEEAQEKAEEAQKAG 56 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444555666777777777777777777777763
No 50
>PHA02844 putative transmembrane protein; Provisional
Probab=53.19 E-value=23 Score=23.18 Aligned_cols=9 Identities=33% Similarity=0.519 Sum_probs=5.8
Q ss_pred Chhhhhccc
Q 043394 3 NDEALINFR 11 (90)
Q Consensus 3 ~~~~~~~~~ 11 (90)
+||...||-
T Consensus 16 ~DdDFnnFI 24 (75)
T PHA02844 16 ENEDFNNFI 24 (75)
T ss_pred chHHHHHHH
Confidence 466666665
No 51
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=52.99 E-value=75 Score=27.54 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 043394 17 QVTHAVDHVQLGTDALRTA 35 (90)
Q Consensus 17 NVe~A~~~Ve~A~~eL~kA 35 (90)
+..+..+.++.....|+..
T Consensus 454 ~~~s~~srves~~~~Lk~s 472 (538)
T PF05781_consen 454 DKSSRYSRVESWASYLKTS 472 (538)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 5566666677766666544
No 52
>PRK13872 conjugal transfer protein TrbF; Provisional
Probab=52.79 E-value=63 Score=23.90 Aligned_cols=32 Identities=19% Similarity=0.053 Sum_probs=13.3
Q ss_pred hhhcchhH-HHHHHHHHHHHHHHHHHhhhcccc
Q 043394 39 QRRSRKCM-MIAIILLLVIAIIIVLAVAIERAD 70 (90)
Q Consensus 39 QKksRKk~-ciiiiiviIIlliIil~vl~~~~~ 70 (90)
+++.|.|+ +.++.+++.++.++.++.+.|.++
T Consensus 35 ~~~~~~w~~va~~~l~i~~~~v~av~~l~plk~ 67 (228)
T PRK13872 35 RVQARNWRLMAFGCLALSAGLAGGLVWQSARGT 67 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 34444465 322333333333344445555543
No 53
>PHA02650 hypothetical protein; Provisional
Probab=52.55 E-value=23 Score=23.49 Aligned_cols=9 Identities=33% Similarity=0.564 Sum_probs=6.0
Q ss_pred Chhhhhccc
Q 043394 3 NDEALINFR 11 (90)
Q Consensus 3 ~~~~~~~~~ 11 (90)
+||...||-
T Consensus 16 ~DdDFnnFI 24 (81)
T PHA02650 16 TDDDFNNFI 24 (81)
T ss_pred cHHHHHHHH
Confidence 467777775
No 54
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=52.25 E-value=20 Score=30.41 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=21.8
Q ss_pred hhhcccccccchHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 043394 6 ALINFRTISWMQVTHAVDHVQLGTDALRTAKRLQRRSRKCMMIAIILL 53 (90)
Q Consensus 6 ~~~~~~~~~~~NVe~A~~~Ve~A~~eL~kA~~yQKksRKk~ciiiiiv 53 (90)
+|.++. +.+++|.++.++.++-|.+.... ....+..++++++
T Consensus 439 eL~~vn----~sL~~A~~~L~~Sn~iL~~v~~~--~~~~~~iI~liVl 480 (490)
T PF00523_consen 439 ELGQVN----NSLNNAKDLLDKSNQILDSVNPG--ISSNSIIIILIVL 480 (490)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHTTTT-----------------
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHhccc--ccchHHHHHHHHH
Confidence 455555 68899999999999999976642 2334444444333
No 55
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=52.25 E-value=72 Score=22.59 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchh
Q 043394 19 THAVDHVQLGTDALRTAKRLQRRSRKC 45 (90)
Q Consensus 19 e~A~~~Ve~A~~eL~kA~~yQKksRKk 45 (90)
.+-.-+.++=..++++|++-+++..|.
T Consensus 127 k~i~l~~~~L~~~~~~a~~~~~~~~Kl 153 (170)
T PF09548_consen 127 KHIELYLEQLEQQLEEAREEAKKKGKL 153 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 333445555666777777766665544
No 56
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=51.34 E-value=24 Score=29.06 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 043394 47 MIAIILLLVIAIIIVLAV 64 (90)
Q Consensus 47 ciiiiiviIIlliIil~v 64 (90)
-+++-+++-++++++|++
T Consensus 14 aiiiSv~LHvlLi~lLi~ 31 (387)
T PRK09510 14 AIIISVVLHIILFALLIW 31 (387)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455444444433
No 57
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=51.03 E-value=18 Score=28.06 Aligned_cols=9 Identities=33% Similarity=0.346 Sum_probs=4.8
Q ss_pred eecCCccee
Q 043394 74 VVGPGALRT 82 (90)
Q Consensus 74 ~~~~~~~~~ 82 (90)
+.-|.+++-
T Consensus 50 ~~~~~g~~~ 58 (264)
T PF04790_consen 50 EFIPDGLRL 58 (264)
T ss_pred EEecCCeEE
Confidence 455555554
No 58
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.58 E-value=90 Score=23.97 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=21.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhh
Q 043394 16 MQVTHAVDHVQLGTDALRTAKRLQRR 41 (90)
Q Consensus 16 ~NVe~A~~~Ve~A~~eL~kA~~yQKk 41 (90)
..+|+|.+-++++-..+.+...|.|.
T Consensus 134 ~~mena~~~I~~~L~~I~~~q~y~R~ 159 (209)
T KOG1693|consen 134 TQMENAIVEIHRALNKIDDTQTYYRL 159 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888898888888888874
No 59
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=50.54 E-value=46 Score=18.93 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 043394 46 MMIAIILLLVIAIIIVLAVAIER 68 (90)
Q Consensus 46 ~ciiiiiviIIlliIil~vl~~~ 68 (90)
+..++++++++++.++.+.+.|+
T Consensus 19 ~~gl~il~~~vl~ai~~p~~~p~ 41 (56)
T PF12911_consen 19 VIGLIILLILVLLAIFAPFISPY 41 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC
Confidence 33334444444444444444444
No 60
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=49.20 E-value=87 Score=22.41 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchhH
Q 043394 21 AVDHVQLGTDALRTAKRLQRRSRKCM 46 (90)
Q Consensus 21 A~~~Ve~A~~eL~kA~~yQKksRKk~ 46 (90)
-.-+.++=..++++|++-+++..|..
T Consensus 129 i~L~~~~L~~~~~~a~~~~~k~~Kmy 154 (170)
T TIGR02833 129 INLTLEHLERQLTEAEDEQKKNEKMY 154 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 33455555677778888888776554
No 61
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=48.85 E-value=89 Score=22.38 Aligned_cols=32 Identities=9% Similarity=0.018 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhH-HHHHHHH
Q 043394 22 VDHVQLGTDALRTAKRLQRRSRKCM-MIAIILL 53 (90)
Q Consensus 22 ~~~Ve~A~~eL~kA~~yQKksRKk~-ciiiiiv 53 (90)
.-+.++=..++++|++-+++..|.. +.-++..
T Consensus 131 ~L~~e~L~~~~~~a~~~~~k~~Kmy~~LGvl~G 163 (171)
T PRK08307 131 RLALEHLEREEEEAEEEQKKNEKMYKYLGFLAG 163 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 3445555667777888887766543 3333333
No 62
>PLN03160 uncharacterized protein; Provisional
Probab=47.40 E-value=13 Score=27.76 Aligned_cols=8 Identities=25% Similarity=0.314 Sum_probs=3.2
Q ss_pred hhHHHHHH
Q 043394 44 KCMMIAII 51 (90)
Q Consensus 44 Kk~ciiii 51 (90)
-+.|++.+
T Consensus 39 c~~~~~a~ 46 (219)
T PLN03160 39 CCGCITAT 46 (219)
T ss_pred EHHHHHHH
Confidence 34444333
No 63
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=47.22 E-value=86 Score=21.06 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=18.9
Q ss_pred hhhhhcccccccchHHHH-HHHHHHHHHHHHHH
Q 043394 4 DEALINFRTISWMQVTHA-VDHVQLGTDALRTA 35 (90)
Q Consensus 4 ~~~~~~~~~~~~~NVe~A-~~~Ve~A~~eL~kA 35 (90)
.|.+.|+++|--.|.|+. .+..++..++..++
T Consensus 184 ~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~ 216 (275)
T PF00664_consen 184 SESLSGIRTIKAFGAEDYFLERFNKALEKYRKA 216 (275)
T ss_dssp HHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 367888888877776654 33444444444333
No 64
>PHA02692 hypothetical protein; Provisional
Probab=47.10 E-value=21 Score=23.07 Aligned_cols=9 Identities=33% Similarity=0.516 Sum_probs=6.6
Q ss_pred Chhhhhccc
Q 043394 3 NDEALINFR 11 (90)
Q Consensus 3 ~~~~~~~~~ 11 (90)
+||.+.||-
T Consensus 16 ~DdDF~~Fi 24 (70)
T PHA02692 16 SDEDFEEFL 24 (70)
T ss_pred CHHHHHHHH
Confidence 577777776
No 65
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=46.44 E-value=17 Score=23.56 Aligned_cols=9 Identities=33% Similarity=0.578 Sum_probs=5.7
Q ss_pred Chhhhhccc
Q 043394 3 NDEALINFR 11 (90)
Q Consensus 3 ~~~~~~~~~ 11 (90)
+||...||=
T Consensus 16 ~ddDf~~Fi 24 (72)
T PF12575_consen 16 SDDDFNNFI 24 (72)
T ss_pred CHHHHHHHH
Confidence 466666665
No 66
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=46.32 E-value=74 Score=24.22 Aligned_cols=27 Identities=7% Similarity=0.195 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhHHHH
Q 043394 23 DHVQLGTDALRTAKRLQRRSRKCMMIA 49 (90)
Q Consensus 23 ~~Ve~A~~eL~kA~~yQKksRKk~cii 49 (90)
..+++=.++++++.+-+++.+|+.|+-
T Consensus 33 ~~~~e~~~~~~e~~~kaeeaqK~Gi~~ 59 (306)
T PF04888_consen 33 KKAEEKAEEIEEAQEKAEEAQKAGIFS 59 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 345555667777777777788887764
No 67
>PHA02819 hypothetical protein; Provisional
Probab=45.86 E-value=35 Score=22.08 Aligned_cols=9 Identities=33% Similarity=0.578 Sum_probs=5.7
Q ss_pred Chhhhhccc
Q 043394 3 NDEALINFR 11 (90)
Q Consensus 3 ~~~~~~~~~ 11 (90)
.||...||-
T Consensus 16 ~DdDFnnFI 24 (71)
T PHA02819 16 SDDDFNNFI 24 (71)
T ss_pred chhHHHHHH
Confidence 466666665
No 68
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=45.69 E-value=20 Score=29.72 Aligned_cols=10 Identities=20% Similarity=0.481 Sum_probs=3.6
Q ss_pred HHHHHHHhhh
Q 043394 57 AIIIVLAVAI 66 (90)
Q Consensus 57 lliIil~vl~ 66 (90)
++++..++.+
T Consensus 313 lL~ig~~~gF 322 (387)
T PF12751_consen 313 LLVIGFAIGF 322 (387)
T ss_pred HHHHHHHHHh
Confidence 3333333333
No 69
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.59 E-value=22 Score=26.97 Aligned_cols=15 Identities=13% Similarity=0.290 Sum_probs=6.5
Q ss_pred hhHHHHHHHHHHHHH
Q 043394 44 KCMMIAIILLLVIAI 58 (90)
Q Consensus 44 Kk~ciiiiiviIIll 58 (90)
||.|++++.+.++++
T Consensus 12 Kw~f~iLLAln~l~~ 26 (197)
T COG4698 12 KWLFFILLALNTLLA 26 (197)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 70
>PHA03054 IMV membrane protein; Provisional
Probab=44.82 E-value=38 Score=22.01 Aligned_cols=9 Identities=22% Similarity=0.534 Sum_probs=5.9
Q ss_pred Chhhhhccc
Q 043394 3 NDEALINFR 11 (90)
Q Consensus 3 ~~~~~~~~~ 11 (90)
+||.+.||-
T Consensus 16 ~d~Df~~Fi 24 (72)
T PHA03054 16 PEDDLTDFI 24 (72)
T ss_pred chHHHHHHH
Confidence 466777765
No 71
>PRK13887 conjugal transfer protein TrbF; Provisional
Probab=44.82 E-value=98 Score=23.34 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=15.1
Q ss_pred HhhhcchhHHHHHH-HHHHHHHHHHHHhhhcccc
Q 043394 38 LQRRSRKCMMIAII-LLLVIAIIIVLAVAIERAD 70 (90)
Q Consensus 38 yQKksRKk~ciiii-iviIIlliIil~vl~~~~~ 70 (90)
+.+++|.|+.+.++ +++.++.++.++.+.|.++
T Consensus 48 ~~~~~~~w~v~a~~~~~ia~~~v~av~~l~plk~ 81 (250)
T PRK13887 48 VVSQRQTWQVVGILSLLIALAAVGGVIHIGSQSK 81 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 33444456653332 3333444444555555544
No 72
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=44.35 E-value=46 Score=21.95 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=23.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhh
Q 043394 15 WMQVTHAVDHVQLGTDALRTAKRLQRR 41 (90)
Q Consensus 15 ~~NVe~A~~~Ve~A~~eL~kA~~yQKk 41 (90)
-.|.+.|-...++|+++|.+|.+-|-+
T Consensus 27 ~~~fe~A~~~l~~a~~~l~~AH~~qt~ 53 (96)
T PF02255_consen 27 EGDFEEAEELLKEADEELLKAHKIQTE 53 (96)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999998864
No 73
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=44.19 E-value=75 Score=19.52 Aligned_cols=13 Identities=23% Similarity=0.125 Sum_probs=6.3
Q ss_pred hcchhHHHHHHHH
Q 043394 41 RSRKCMMIAIILL 53 (90)
Q Consensus 41 ksRKk~ciiiiiv 53 (90)
..-||.+-+++..
T Consensus 48 ~n~kW~~r~iiGa 60 (71)
T PF10779_consen 48 SNTKWIWRTIIGA 60 (71)
T ss_pred HHHHHHHHHHHHH
Confidence 3446665544443
No 74
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=44.02 E-value=25 Score=24.87 Aligned_cols=11 Identities=36% Similarity=0.440 Sum_probs=4.6
Q ss_pred cchhHHHHHHH
Q 043394 42 SRKCMMIAIIL 52 (90)
Q Consensus 42 sRKk~ciiiii 52 (90)
..|++.+++++
T Consensus 13 g~kkkl~ii~l 23 (162)
T PRK07021 13 GKKRKLWLIIL 23 (162)
T ss_pred CCccchhHHHH
Confidence 33444444433
No 75
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=43.06 E-value=38 Score=26.67 Aligned_cols=12 Identities=17% Similarity=0.147 Sum_probs=8.4
Q ss_pred ccccccc--eecCC
Q 043394 67 ERADTEA--VVGPG 78 (90)
Q Consensus 67 ~~~~~~~--~~~~~ 78 (90)
+|+.+++ +.||-
T Consensus 214 C~k~dPg~p~~g~~ 227 (259)
T PF07010_consen 214 CWKTDPGTPENGPD 227 (259)
T ss_pred hhcCCCCCcccCCC
Confidence 8888888 44543
No 76
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=41.85 E-value=75 Score=19.94 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Q 043394 19 THAVDHVQLGTDALRTAKRLQRRSRKCMMIAIILLLVIA 57 (90)
Q Consensus 19 e~A~~~Ve~A~~eL~kA~~yQKksRKk~ciiiiiviIIl 57 (90)
|.|.++...--++ +...++++.|-..+..++++.+++
T Consensus 9 ETA~~FL~RvGr~--q~~~r~RrRrc~~~v~~v~~~~~~ 45 (60)
T PF06072_consen 9 ETATEFLRRVGRQ--QHASRRRRRRCRLAVAIVFAVVAL 45 (60)
T ss_pred ccHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666554433 334566777877776655544443
No 77
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.53 E-value=1.1e+02 Score=23.67 Aligned_cols=17 Identities=6% Similarity=0.090 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q 043394 17 QVTHAVDHVQLGTDALR 33 (90)
Q Consensus 17 NVe~A~~~Ve~A~~eL~ 33 (90)
-.-++.+++.++.+-|.
T Consensus 171 rL~~td~~lgkS~kiL~ 187 (220)
T KOG1666|consen 171 RLRETDANLGKSRKILT 187 (220)
T ss_pred HHHhchhhhhHHHHHHH
Confidence 34444555555554444
No 78
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=41.45 E-value=14 Score=31.26 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=36.7
Q ss_pred ChhhhhcccccccchHHHHHHHH--HHHHHHHHHHHHHhhhcchhHHHHHH
Q 043394 3 NDEALINFRTISWMQVTHAVDHV--QLGTDALRTAKRLQRRSRKCMMIAII 51 (90)
Q Consensus 3 ~~~~~~~~~~~~~~NVe~A~~~V--e~A~~eL~kA~~yQKksRKk~ciiii 51 (90)
++|+=.+|-+++..-..+-...+ ..|...|.+|..+-|+.++|.||++-
T Consensus 11 s~E~kr~FLkVsi~eL~sy~~~~~~~~a~~~Lseal~fak~n~sWrFWiCp 61 (466)
T PF04780_consen 11 SSEQKRDFLKVSIDELKSYYESVYDREAADALSEALSFAKENKSWRFWICP 61 (466)
T ss_pred CHHHhcCceeeEHHHHHHHHHhccchHHHHHHHHHHHHHHhcCceeEeeCC
Confidence 56777788888775555544444 34899999999999999999876653
No 79
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=41.29 E-value=52 Score=21.20 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=11.0
Q ss_pred HHhhh-cchhHHHHHHHHHHHHHHHH
Q 043394 37 RLQRR-SRKCMMIAIILLLVIAIIIV 61 (90)
Q Consensus 37 ~yQKk-sRKk~ciiiiiviIIlliIi 61 (90)
+.+|+ .|++.+++-.+...+++++.
T Consensus 45 ~i~kK~k~kK~iiiS~i~s~lalli~ 70 (84)
T PF09716_consen 45 KIEKKKKNKKKIIISTIASGLALLIA 70 (84)
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHH
Confidence 34444 44444444444444444333
No 80
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=40.97 E-value=38 Score=25.22 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=8.2
Q ss_pred HHHHHHH-HHHHHHHHHHHhhh
Q 043394 46 MMIAIIL-LLVIAIIIVLAVAI 66 (90)
Q Consensus 46 ~ciiiii-viIIlliIil~vl~ 66 (90)
+|++++. ++.++++++++.+.
T Consensus 31 m~tILiaIvVliiiiivli~lc 52 (189)
T PF05568_consen 31 MYTILIAIVVLIIIIIVLIYLC 52 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333 33333333444444
No 81
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=40.80 E-value=49 Score=21.99 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=23.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhh
Q 043394 15 WMQVTHAVDHVQLGTDALRTAKRLQRR 41 (90)
Q Consensus 15 ~~NVe~A~~~Ve~A~~eL~kA~~yQKk 41 (90)
-.|.+.|-..+++|.+++.+|.+.|-+
T Consensus 28 ~g~fe~A~~~l~ea~~~l~~AH~~qt~ 54 (97)
T cd00215 28 EGDFAEAEELLEEANDSLNEAHHAQTK 54 (97)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999998864
No 82
>PF14967 FAM70: FAM70 protein
Probab=40.33 E-value=21 Score=29.01 Aligned_cols=41 Identities=17% Similarity=0.367 Sum_probs=17.3
Q ss_pred HHHHHHhhhcchhHHHHHHHHHHHHHHHHHHhhhccccccc
Q 043394 33 RTAKRLQRRSRKCMMIAIILLLVIAIIIVLAVAIERADTEA 73 (90)
Q Consensus 33 ~kA~~yQKksRKk~ciiiiiviIIlliIil~vl~~~~~~~~ 73 (90)
..+..+.|+.|+-.++.+.++++-++++.+.+.-+.++..+
T Consensus 15 ~~~~~f~rRkk~slw~~~~lL~vS~~iltvGLaatTRTeNV 55 (327)
T PF14967_consen 15 DSTGEFARRKKTSLWFVVSLLVVSLLILTVGLAATTRTENV 55 (327)
T ss_pred chhhHHhhhhceeeeeeHHHHHHHHHHHHhhhheeeeecce
Confidence 35556666655433332222222233333333344444444
No 83
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=39.85 E-value=8.4 Score=27.59 Aligned_cols=10 Identities=30% Similarity=0.325 Sum_probs=4.2
Q ss_pred chhHHHHHHH
Q 043394 43 RKCMMIAIIL 52 (90)
Q Consensus 43 RKk~ciiiii 52 (90)
+|++++++++
T Consensus 22 kkk~liii~~ 31 (166)
T PRK12785 22 KKKKLIIIAA 31 (166)
T ss_pred CcceEeeHHH
Confidence 3444444333
No 84
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=39.64 E-value=43 Score=23.55 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=27.0
Q ss_pred hhhhcccccccchHHHHHHHHHHHHHHHHHHHHHhhhcchhHHH
Q 043394 5 EALINFRTISWMQVTHAVDHVQLGTDALRTAKRLQRRSRKCMMI 48 (90)
Q Consensus 5 ~~~~~~~~~~~~NVe~A~~~Ve~A~~eL~kA~~yQKksRKk~ci 48 (90)
+.+.....+++ ++.+-.-..+++.++|++-.+......+|.-+
T Consensus 65 ~~l~~v~~l~~-~~~~~~~~~~ea~~~L~~I~~~~~~y~~~~~~ 107 (193)
T PF06738_consen 65 DKLAAVNRLSR-RIVAGQLSLEEAIERLDEIDREPPRYPPWLVI 107 (193)
T ss_pred HHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHhhCCCCCCHHHHH
Confidence 33444444444 55555567788889998887777666666543
No 85
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=38.33 E-value=19 Score=26.51 Aligned_cols=11 Identities=18% Similarity=0.332 Sum_probs=4.0
Q ss_pred HHHHHHhhhcc
Q 043394 33 RTAKRLQRRSR 43 (90)
Q Consensus 33 ~kA~~yQKksR 43 (90)
++-+...|+++
T Consensus 121 KkKEae~kr~K 131 (159)
T PF06789_consen 121 KKKEAELKRSK 131 (159)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 86
>COG3736 VirB8 Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]
Probab=38.03 E-value=1.4e+02 Score=23.20 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhhhccccccc
Q 043394 53 LLVIAIIIVLAVAIERADTEA 73 (90)
Q Consensus 53 viIIlliIil~vl~~~~~~~~ 73 (90)
++.+++++.++++.|......
T Consensus 52 ~l~v~~~~~Ia~llPLK~~ep 72 (239)
T COG3736 52 LLAVAAVIAIAILLPLKKTEP 72 (239)
T ss_pred HHHHHHHHHHHhhcccccccc
Confidence 334445555666777655443
No 87
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.88 E-value=12 Score=27.53 Aligned_cols=17 Identities=41% Similarity=0.727 Sum_probs=6.4
Q ss_pred hhHHHHHHHHHHHHHHH
Q 043394 44 KCMMIAIILLLVIAIII 60 (90)
Q Consensus 44 Kk~ciiiiiviIIlliI 60 (90)
|+..+++++++++++++
T Consensus 4 k~~~~i~ii~viflai~ 20 (161)
T COG5353 4 KHLIIIIIILVIFLAII 20 (161)
T ss_pred eEeeeehhHHHHHHHHH
Confidence 33333333333333333
No 88
>PF11807 DUF3328: Domain of unknown function (DUF3328); InterPro: IPR021765 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes.
Probab=37.68 E-value=42 Score=23.00 Aligned_cols=6 Identities=33% Similarity=0.512 Sum_probs=2.5
Q ss_pred hcchhH
Q 043394 41 RSRKCM 46 (90)
Q Consensus 41 ksRKk~ 46 (90)
++|+|.
T Consensus 6 r~~~w~ 11 (217)
T PF11807_consen 6 RRRRWR 11 (217)
T ss_pred CCccHH
Confidence 344444
No 89
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=37.31 E-value=53 Score=23.03 Aligned_cols=13 Identities=31% Similarity=0.601 Sum_probs=8.3
Q ss_pred cccceecCCccee
Q 043394 70 DTEAVVGPGALRT 82 (90)
Q Consensus 70 ~~~~~~~~~~~~~ 82 (90)
.+....|||..|.
T Consensus 60 g~~~f~g~~~ir~ 72 (133)
T PF04238_consen 60 GSTPFGGPGWIRP 72 (133)
T ss_pred CCcccCCCccHHH
Confidence 3333678887775
No 90
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=37.14 E-value=1e+02 Score=22.34 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=10.1
Q ss_pred hcccccccchHHHHHHHHHHHHHHHH
Q 043394 8 INFRTISWMQVTHAVDHVQLGTDALR 33 (90)
Q Consensus 8 ~~~~~~~~~NVe~A~~~Ve~A~~eL~ 33 (90)
|.+|++.. +|++..+++..--+.++
T Consensus 62 drlr~va~-rvQ~vlgd~At~gERl~ 86 (156)
T PF08372_consen 62 DRLRSVAG-RVQNVLGDVATQGERLQ 86 (156)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34444443 34444444443333333
No 91
>PHA02642 C-type lectin-like protein; Provisional
Probab=36.74 E-value=32 Score=26.24 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=12.6
Q ss_pred hhHHHHHHHH-HHHHHHHHHHhhhccccc
Q 043394 44 KCMMIAIILL-LVIAIIIVLAVAIERADT 71 (90)
Q Consensus 44 Kk~ciiiiiv-iIIlliIil~vl~~~~~~ 71 (90)
|.-||.++|. ++...++.+++...+..+
T Consensus 49 ~~~~c~~~i~~l~~~~~~~l~~~~~~~~~ 77 (216)
T PHA02642 49 KLYCCIITICILITINLVPIIILMAFKSD 77 (216)
T ss_pred ceeeeeehHHHHHHHHHHHHHHHHHhccc
Confidence 4445544443 333444445455444433
No 92
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=34.79 E-value=65 Score=21.45 Aligned_cols=28 Identities=18% Similarity=0.001 Sum_probs=24.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 043394 14 SWMQVTHAVDHVQLGTDALRTAKRLQRR 41 (90)
Q Consensus 14 ~~~NVe~A~~~Ve~A~~eL~kA~~yQKk 41 (90)
.-.|.+.|-...++|++++.+|.+.|-+
T Consensus 29 ~~gdfe~A~~~l~eA~~~l~~AH~~qt~ 56 (99)
T TIGR00823 29 KAGDFAKARALVEQAGMCLNEAHLAQTS 56 (99)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999999998864
No 93
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=33.46 E-value=56 Score=24.14 Aligned_cols=14 Identities=14% Similarity=0.202 Sum_probs=7.8
Q ss_pred HHHHHHHhhhcchh
Q 043394 32 LRTAKRLQRRSRKC 45 (90)
Q Consensus 32 L~kA~~yQKksRKk 45 (90)
-....+.||..||+
T Consensus 18 y~as~~r~k~~~R~ 31 (161)
T PHA02673 18 YVASVKRQKAIRRY 31 (161)
T ss_pred hhhHHHHHHHHHHH
Confidence 33445566666665
No 94
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=33.42 E-value=72 Score=21.98 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=23.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhh
Q 043394 15 WMQVTHAVDHVQLGTDALRTAKRLQRR 41 (90)
Q Consensus 15 ~~NVe~A~~~Ve~A~~eL~kA~~yQKk 41 (90)
-.|.+.|-..+++|++++.+|.+.|-+
T Consensus 44 ~gdfe~A~~~l~eA~e~l~~AH~~qt~ 70 (115)
T PRK10454 44 QGDFAAAKAMMDQSRMALNEAHLVQTK 70 (115)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999864
No 95
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=33.05 E-value=1.8e+02 Score=22.88 Aligned_cols=8 Identities=0% Similarity=0.219 Sum_probs=4.6
Q ss_pred HHHhhhcc
Q 043394 36 KRLQRRSR 43 (90)
Q Consensus 36 ~~yQKksR 43 (90)
++|-|+.+
T Consensus 207 e~y~ksk~ 214 (244)
T KOG2678|consen 207 EKYDKSKL 214 (244)
T ss_pred HHHHHhhh
Confidence 45666654
No 96
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.50 E-value=1.3e+02 Score=21.28 Aligned_cols=38 Identities=13% Similarity=0.078 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH
Q 043394 19 THAVDHVQLGTDALRTAKRLQRRSRKCMMIAIILLLVIAI 58 (90)
Q Consensus 19 e~A~~~Ve~A~~eL~kA~~yQKksRKk~ciiiiiviIIll 58 (90)
.++.......-..++.-.+. +.++-+|++.+..+|.++
T Consensus 74 dsts~~L~gtm~r~~~~ar~--sg~~l~~~m~~f~lV~~f 111 (118)
T KOG3385|consen 74 DSTSGFLSGTMGRLKTMARR--SGISLLCWMAVFSLVAFF 111 (118)
T ss_pred hhhHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHH
Confidence 34444455554444433222 445666766555444433
No 97
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=32.26 E-value=79 Score=21.26 Aligned_cols=27 Identities=15% Similarity=0.088 Sum_probs=23.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhh
Q 043394 15 WMQVTHAVDHVQLGTDALRTAKRLQRR 41 (90)
Q Consensus 15 ~~NVe~A~~~Ve~A~~eL~kA~~yQKk 41 (90)
-.|-+.|-...++|.+++.+|.+.|-+
T Consensus 33 ~gdf~~A~~~l~eA~~~l~~AH~~qt~ 59 (104)
T PRK09591 33 EGNFDLAEQKLNQSNEELLEAHHAQTK 59 (104)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999998864
No 98
>TIGR00701 conserved hypothetical integral membrane protein. It appears this conserved hypothetical integral membrane protein is found only in gram negative bacteria. Completed genomes that include a member of this family include Rickettsia prowazekii, Synechocystis sp. PCC6803, and Helicobacter pylori. These proteins have 3 (Helicobacter pylori) to 5 (Synechocystis sp. PCC 6803) GES predicted transmembrane regions. Most members have 4 GES predicted transmembrane regions.
Probab=32.13 E-value=23 Score=24.88 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Q 043394 46 MMIAIILLLVIAIIIVLAVAIERA 69 (90)
Q Consensus 46 ~ciiiiiviIIlliIil~vl~~~~ 69 (90)
...--+-.++++++++++++||++
T Consensus 119 r~~ne~p~llli~iV~lvV~KPf~ 142 (142)
T TIGR00701 119 RIVNEAPTILMVIIVILVVVKPFD 142 (142)
T ss_pred HHHHHHHHHHHHHHHHheeeCCCC
Confidence 333344455555666677788863
No 99
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=32.02 E-value=15 Score=24.59 Aligned_cols=18 Identities=22% Similarity=0.299 Sum_probs=0.0
Q ss_pred hcchhHHHHHHHHHHHHH
Q 043394 41 RSRKCMMIAIILLLVIAI 58 (90)
Q Consensus 41 ksRKk~ciiiiiviIIll 58 (90)
++|..+|++.+..-++++
T Consensus 24 ~rR~~k~~~~i~~s~~~l 41 (106)
T PF11837_consen 24 RRRPLKCLAAIFSSLLFL 41 (106)
T ss_dssp ------------------
T ss_pred cCCcchhHHHHHHHHHHH
Confidence 334345655554433333
No 100
>COG4640 Predicted membrane protein [Function unknown]
Probab=31.82 E-value=59 Score=27.57 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhhh-cchhHHHHHHHHHHHHHHH
Q 043394 24 HVQLGTDALRTAKRLQRR-SRKCMMIAIILLLVIAIII 60 (90)
Q Consensus 24 ~Ve~A~~eL~kA~~yQKk-sRKk~ciiiiiviIIlliI 60 (90)
.-.+|++++..-.+..|+ -.|++++.+..+.+++++|
T Consensus 28 ~~sqan~~tn~i~~trrkniskK~ii~was~a~~lIli 65 (465)
T COG4640 28 RQSQANKSTNEIIQTRRKNISKKKIIPWASGAFILILI 65 (465)
T ss_pred hhhhhhHHHHHHHHhhccCCccceeehhHHHHHHHHHH
Confidence 345677777665544443 4455555554444443333
No 101
>PRK01294 lipase chaperone; Provisional
Probab=31.50 E-value=65 Score=25.73 Aligned_cols=26 Identities=8% Similarity=-0.083 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccc
Q 043394 48 IAIILLLVIAIIIVLAVAIERADTEA 73 (90)
Q Consensus 48 iiiiiviIIlliIil~vl~~~~~~~~ 73 (90)
++++++++++.+..+..+.+...++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (336)
T PRK01294 6 ALSLGLVGLVAIGAVWLWPGDPANSS 31 (336)
T ss_pred hHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 33333334444444444554444444
No 102
>PRK03784 vtamin B12-transporter permease; Provisional
Probab=30.85 E-value=71 Score=25.48 Aligned_cols=16 Identities=38% Similarity=0.677 Sum_probs=9.3
Q ss_pred HHHHHHHhhhcchhHH
Q 043394 32 LRTAKRLQRRSRKCMM 47 (90)
Q Consensus 32 L~kA~~yQKksRKk~c 47 (90)
+.-|++.||+.|+|..
T Consensus 4 ~~~~~~~~~~~~~~~~ 19 (331)
T PRK03784 4 LTLARQQQRRNRRWLL 19 (331)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456666666655543
No 103
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=30.68 E-value=41 Score=18.64 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=24.7
Q ss_pred hhhhhcccccccchHHHHHHHHHHHHHHHHHHHHH
Q 043394 4 DEALINFRTISWMQVTHAVDHVQLGTDALRTAKRL 38 (90)
Q Consensus 4 ~~~~~~~~~~~~~NVe~A~~~Ve~A~~eL~kA~~y 38 (90)
||.+..|.+|-=.+-+.|..+.+..+=+|+.|...
T Consensus 1 ~e~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~~ 35 (43)
T PF14555_consen 1 DEKIAQFMSITGADEDVAIQYLEANNWDLEAAVNA 35 (43)
T ss_dssp HHHHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHHH
T ss_pred CHHHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHH
Confidence 56677777776667788888888888888888653
No 104
>PF03653 UPF0093: Uncharacterised protein family (UPF0093); InterPro: IPR005265 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments). There is some indirect indication of a link between this protein and the function or assembly of cytochromes: in Escherichia coli, strains overproducing this protein turn pink, perhaps because of an excess of accumulated haems [].
Probab=30.66 E-value=27 Score=24.46 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 043394 46 MMIAIILLLVIAIIIVLAVAIER 68 (90)
Q Consensus 46 ~ciiiiiviIIlliIil~vl~~~ 68 (90)
..+--+..+.+++++.+++.|||
T Consensus 125 r~~nei~~ll~i~Iv~lvv~KPF 147 (147)
T PF03653_consen 125 RIFNEIPTLLLIAIVILVVVKPF 147 (147)
T ss_pred HHHhHHHHHHHHHHHHHheeCCC
Confidence 34433444445555566677775
No 105
>PF10814 DUF2562: Protein of unknown function (DUF2562); InterPro: IPR024245 This protein of unknown function appears to be found predominantly in Mycobacterium spp.
Probab=30.49 E-value=1.1e+02 Score=21.89 Aligned_cols=18 Identities=39% Similarity=0.665 Sum_probs=8.9
Q ss_pred HHHHHHHHHhhhcchhHH
Q 043394 30 DALRTAKRLQRRSRKCMM 47 (90)
Q Consensus 30 ~eL~kA~~yQKksRKk~c 47 (90)
+-|++|++.+++.||.+.
T Consensus 76 ~alq~aR~~~rr~rRpll 93 (133)
T PF10814_consen 76 QALQGARRRRRRRRRPLL 93 (133)
T ss_pred HHHHHHHHhccccccchH
Confidence 445555555555444443
No 106
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=30.36 E-value=2.5e+02 Score=21.46 Aligned_cols=52 Identities=15% Similarity=0.159 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHhh---------hcchhHHHHHHHHHHHHHHHHHHhhhccc
Q 043394 18 VTHAVDHVQLGTDALRTAK--RLQR---------RSRKCMMIAIILLLVIAIIIVLAVAIERA 69 (90)
Q Consensus 18 Ve~A~~~Ve~A~~eL~kA~--~yQK---------ksRKk~ciiiiiviIIlliIil~vl~~~~ 69 (90)
++.+-..++++..+|.+|. +|+. +..-|.-+.++.+=+++++++..++-||+
T Consensus 115 l~~aE~~~e~~~~~L~~~Il~RYHEEQiWSDKIRr~STwgT~~lmgvNvllFl~~~~~~EPwk 177 (207)
T PF05546_consen 115 LEEAEEKVEEAFDDLMRAILTRYHEEQIWSDKIRRASTWGTWGLMGVNVLLFLVAQLLVEPWK 177 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 4455555666666666664 3332 22345556666666667666666777885
No 107
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=30.01 E-value=67 Score=21.27 Aligned_cols=25 Identities=12% Similarity=0.204 Sum_probs=15.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhh
Q 043394 42 SRKCMMIAIILLLVIAIIIVLAVAI 66 (90)
Q Consensus 42 sRKk~ciiiiiviIIlliIil~vl~ 66 (90)
.-.||..++++++++.++..++=+.
T Consensus 4 yp~WKyllil~vl~~~~lyALPnly 28 (101)
T PF13721_consen 4 YPLWKYLLILVVLLLGALYALPNLY 28 (101)
T ss_pred cchHHHHHHHHHHHHHHHHHhhhcc
Confidence 3478877766666666655554444
No 108
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=29.50 E-value=1.4e+02 Score=18.95 Aligned_cols=16 Identities=38% Similarity=0.573 Sum_probs=9.5
Q ss_pred HHHHHHhhhcchhHHH
Q 043394 33 RTAKRLQRRSRKCMMI 48 (90)
Q Consensus 33 ~kA~~yQKksRKk~ci 48 (90)
++|.++|+..+..+.+
T Consensus 9 ~~a~~~q~~~~~~~~~ 24 (112)
T PF14015_consen 9 KKARRAQRRYRRLRIA 24 (112)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566777766654443
No 109
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=29.22 E-value=52 Score=26.86 Aligned_cols=34 Identities=15% Similarity=0.422 Sum_probs=29.3
Q ss_pred CCChhhhhcccccccchHHHHHHHHHHHHHHHHH
Q 043394 1 MFNDEALINFRTISWMQVTHAVDHVQLGTDALRT 34 (90)
Q Consensus 1 ~~~~~~~~~~~~~~~~NVe~A~~~Ve~A~~eL~k 34 (90)
.|++|++.+++.+++.|+.++...+-+|...+.-
T Consensus 60 gfs~ee~~~~r~~I~~N~~~~~~~ll~a~~~~~i 93 (354)
T KOG0082|consen 60 GFSEEELLEYRPVIYSNIIQSLKALLRAMETLGI 93 (354)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4899999999999999999999888888875543
No 110
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=28.86 E-value=2e+02 Score=21.77 Aligned_cols=26 Identities=8% Similarity=0.069 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhhhcchhHHHHH
Q 043394 25 VQLGTDALRTAKRLQRRSRKCMMIAI 50 (90)
Q Consensus 25 Ve~A~~eL~kA~~yQKksRKk~ciii 50 (90)
.++..++|+.+++++|-+.-+.+..+
T Consensus 209 L~~t~~~lk~~~q~~KL~lyr~f~~~ 234 (295)
T PF06814_consen 209 LSKTIRDLKARRQTAKLSLYRRFYNV 234 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666543333333
No 111
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=28.76 E-value=86 Score=23.23 Aligned_cols=20 Identities=10% Similarity=0.009 Sum_probs=12.4
Q ss_pred hhhccccccceecCCcceee
Q 043394 64 VAIERADTEAVVGPGALRTV 83 (90)
Q Consensus 64 vl~~~~~~~~~~~~~~~~~~ 83 (90)
+..+....+...||.+-...
T Consensus 73 ~~~~~~~~~~~~CP~~Wi~~ 92 (200)
T PF05473_consen 73 FAVPQSALGCGPCPKGWIGY 92 (200)
T ss_pred HhhhHhhccCCCCCccceee
Confidence 34465666678888775443
No 112
>PF04335 VirB8: VirB8 protein; InterPro: IPR007430 VirB8 is a bacterial virulence protein with cytoplasmic, transmembrane, and periplasmic regions. It is thought that it is a primary constituent of a DNA transporter. The periplasmic region interacts with VirB9, VirB10, and itself []. This family also includes the conjugal transfer protein family TrbF, a family of proteins known to be involved in conjugal transfer. The TrbF protein is thought to compose part of the pilus required for transfer []. ; GO: 0016020 membrane; PDB: 2CC3_B 2BHM_C.
Probab=28.15 E-value=19 Score=25.25 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHhhhcchhHHH
Q 043394 33 RTAKRLQRRSRKCMMI 48 (90)
Q Consensus 33 ~kA~~yQKksRKk~ci 48 (90)
.......++.|.|+++
T Consensus 8 dr~~~~~~~~~~~~~~ 23 (212)
T PF04335_consen 8 DRYGSARRSRRRWWIV 23 (212)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455566666655
No 113
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=28.14 E-value=84 Score=25.40 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=9.4
Q ss_pred HHHHHHHhhhcchhH
Q 043394 32 LRTAKRLQRRSRKCM 46 (90)
Q Consensus 32 L~kA~~yQKksRKk~ 46 (90)
+....-|+|+-++..
T Consensus 6 ~~s~~~~~~~~~~~~ 20 (457)
T TIGR01000 6 LESSEFYQKRYHNFS 20 (457)
T ss_pred hhHHHHHHhcCCCcc
Confidence 344566788776655
No 114
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=27.45 E-value=1.7e+02 Score=20.62 Aligned_cols=31 Identities=3% Similarity=0.143 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcchhHH
Q 043394 17 QVTHAVDHVQLGTDALRTAKRLQRRSRKCMM 47 (90)
Q Consensus 17 NVe~A~~~Ve~A~~eL~kA~~yQKksRKk~c 47 (90)
+++.+.++.+...++.++-.+-+.|--+...
T Consensus 128 ~i~l~~~~L~~~~~~a~~~~~~~~Klyr~LG 158 (170)
T PF09548_consen 128 HIELYLEQLEQQLEEAREEAKKKGKLYRSLG 158 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4444444444444444444444444434443
No 115
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=27.38 E-value=1.3e+02 Score=23.93 Aligned_cols=10 Identities=20% Similarity=0.371 Sum_probs=4.3
Q ss_pred hhHHHHHHHH
Q 043394 44 KCMMIAIILL 53 (90)
Q Consensus 44 Kk~ciiiiiv 53 (90)
|++.++++++
T Consensus 19 ~~kl~~~~~~ 28 (545)
T PRK15053 19 PLRIFLLILV 28 (545)
T ss_pred HHHHHHHHHH
Confidence 4454443333
No 116
>PHA03164 hypothetical protein; Provisional
Probab=27.05 E-value=83 Score=20.95 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=10.1
Q ss_pred HHhhhcchhHHHHHHHHHHHHH
Q 043394 37 RLQRRSRKCMMIAIILLLVIAI 58 (90)
Q Consensus 37 ~yQKksRKk~ciiiiiviIIll 58 (90)
..-++.||.--++++..+++.+
T Consensus 49 nlwnnrRktftFlvLtgLaIam 70 (88)
T PHA03164 49 NLWNNRRKTFTFLVLTGLAIAM 70 (88)
T ss_pred HHHHhhhheeehHHHHHHHHHH
Confidence 3334555554444444444433
No 117
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=26.70 E-value=1.6e+02 Score=18.48 Aligned_cols=9 Identities=11% Similarity=0.154 Sum_probs=3.8
Q ss_pred hhhcchhHH
Q 043394 39 QRRSRKCMM 47 (90)
Q Consensus 39 QKksRKk~c 47 (90)
+++..+|..
T Consensus 65 ~~~~~~~~~ 73 (92)
T PF13038_consen 65 KYRVSRWTY 73 (92)
T ss_pred hhHhHHHHH
Confidence 344444443
No 118
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=26.56 E-value=85 Score=24.37 Aligned_cols=38 Identities=5% Similarity=0.083 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhccccccceec--CCcce
Q 043394 44 KCMMIAIILLLVIAIIIVLAVAIERADTEAVVG--PGALR 81 (90)
Q Consensus 44 Kk~ciiiiiviIIlliIil~vl~~~~~~~~~~~--~~~~~ 81 (90)
+|..++.++.++++.++.+..+.-.-.=.+-|| |..||
T Consensus 186 ~W~i~~~v~~i~~i~vv~i~~irR~i~lkYrYg~~~~~~~ 225 (226)
T PHA02662 186 PWTLLLAVAAVTVLGVVAVSLLRRALRIRFRYSKPLNTLR 225 (226)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhheeeeecCCchhcc
Confidence 444333333244444444444443333334444 44444
No 119
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=26.53 E-value=1.1e+02 Score=22.53 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=26.7
Q ss_pred ccccccchHHHHH------HHHHHHHHHHHHHHHHhhhcchh
Q 043394 10 FRTISWMQVTHAV------DHVQLGTDALRTAKRLQRRSRKC 45 (90)
Q Consensus 10 ~~~~~~~NVe~A~------~~Ve~A~~eL~kA~~yQKksRKk 45 (90)
=+||...+|-+|. +|++.+...+..-..++++.|++
T Consensus 64 KKTIa~EHV~KALe~LgF~eYiee~~~vl~~~K~~~~~~~~k 105 (156)
T KOG0871|consen 64 KKTIAPEHVIKALENLGFGEYIEEAEEVLENCKEEAKKRRRK 105 (156)
T ss_pred cccCCHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3567777777764 78999999998888888865543
No 120
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=25.59 E-value=1.1e+02 Score=20.34 Aligned_cols=7 Identities=29% Similarity=0.287 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 043394 30 DALRTAK 36 (90)
Q Consensus 30 ~eL~kA~ 36 (90)
.||++=.
T Consensus 20 DQL~qlV 26 (84)
T PF06143_consen 20 DQLEQLV 26 (84)
T ss_pred HHHHHHH
Confidence 3444444
No 121
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=25.08 E-value=70 Score=25.23 Aligned_cols=13 Identities=38% Similarity=0.455 Sum_probs=5.8
Q ss_pred cchhHHHHHHHHH
Q 043394 42 SRKCMMIAIILLL 54 (90)
Q Consensus 42 sRKk~ciiiiivi 54 (90)
+|||.++.+++.+
T Consensus 194 aRkR~i~f~llgl 206 (256)
T PF09788_consen 194 ARKRAIIFFLLGL 206 (256)
T ss_pred hhhHHHHHHHHHH
Confidence 4455544444433
No 122
>COG1766 fliF Flagellar basal body M-ring protein [Cell motility and secretion]
Probab=24.54 E-value=2.3e+02 Score=24.36 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=7.3
Q ss_pred HHHHHHHHhhh-cchhHH
Q 043394 31 ALRTAKRLQRR-SRKCMM 47 (90)
Q Consensus 31 eL~kA~~yQKk-sRKk~c 47 (90)
.+.+...+=++ ++++++
T Consensus 8 ~~~k~~~~~~~~~~~~ki 25 (545)
T COG1766 8 LLKKLKEFWGKLTKKQKI 25 (545)
T ss_pred HHHHHHHHHhhhhhhHHH
Confidence 34445553333 334443
No 123
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=24.46 E-value=1e+02 Score=20.54 Aligned_cols=16 Identities=19% Similarity=0.576 Sum_probs=6.4
Q ss_pred hcchhHHHHHHHHHHH
Q 043394 41 RSRKCMMIAIILLLVI 56 (90)
Q Consensus 41 ksRKk~ciiiiiviII 56 (90)
+.+|+-++.+.++.++
T Consensus 10 ~~~kkFl~~l~~vfii 25 (85)
T PF10749_consen 10 KEGKKFLLALAIVFII 25 (85)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 3334444444443333
No 124
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=24.44 E-value=1.4e+02 Score=20.52 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=23.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhh
Q 043394 15 WMQVTHAVDHVQLGTDALRTAKRLQRR 41 (90)
Q Consensus 15 ~~NVe~A~~~Ve~A~~eL~kA~~yQKk 41 (90)
-.+-+.|-..+++|+++|..|...|-+
T Consensus 32 ~g~f~~A~~~i~eA~~~l~eAH~~QT~ 58 (105)
T COG1447 32 EGDFEEAEELIQEANDALNEAHHVQTK 58 (105)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788999999999999999998865
No 125
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=24.17 E-value=1e+02 Score=24.72 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 043394 49 AIILLLVIAIIIVLAV 64 (90)
Q Consensus 49 iiiiviIIlliIil~v 64 (90)
++-+++-++++++|++
T Consensus 5 ~lSv~lHvlLi~lL~~ 20 (346)
T TIGR02794 5 LLSLLLHILLLGLLIL 20 (346)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 126
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=23.62 E-value=78 Score=21.28 Aligned_cols=10 Identities=30% Similarity=0.398 Sum_probs=3.9
Q ss_pred chhHHHHHHH
Q 043394 43 RKCMMIAIIL 52 (90)
Q Consensus 43 RKk~ciiiii 52 (90)
|+|..+++.+
T Consensus 3 rr~~~~~~~v 12 (112)
T PF14155_consen 3 RRKLVIAGAV 12 (112)
T ss_pred cceeEehHHH
Confidence 3444333333
No 127
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=23.46 E-value=78 Score=27.42 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=6.9
Q ss_pred HHhhhcchhHHHH
Q 043394 37 RLQRRSRKCMMIA 49 (90)
Q Consensus 37 ~yQKksRKk~cii 49 (90)
+.||+-||+.++.
T Consensus 16 ~~~~~~r~ri~~~ 28 (596)
T PLN02745 16 ERQQKFRKRIIIG 28 (596)
T ss_pred HHHHhhhheEEEe
Confidence 3455566665543
No 128
>TIGR00247 conserved hypothetical protein, YceG family. This uncharacterized protein family, found in three of four microbial genomes, virtually always once per genome, includes YceG from Escherichia coli. This protein is encoded next to PabC, 4-amino-4-deoxychorismate lyase, in E. coli and numerous other proteobacteria, but that proximity is not conserved in other lineages. Numerous members of this family have been misannotated as aminodeoxychorismate lyase, apparently because of promiximty to PabC.
Probab=23.22 E-value=1.5e+02 Score=23.47 Aligned_cols=15 Identities=40% Similarity=0.660 Sum_probs=6.1
Q ss_pred hhHHHHHHHHHHHHH
Q 043394 44 KCMMIAIILLLVIAI 58 (90)
Q Consensus 44 Kk~ciiiiiviIIll 58 (90)
||++.++++++++++
T Consensus 2 ~~~~~~i~~~~vl~~ 16 (342)
T TIGR00247 2 KKFLIIILLLFVLFF 16 (342)
T ss_pred hhHHHHHHHHHHHHH
Confidence 344444444333333
No 129
>PF08990 Docking: Erythronolide synthase docking; InterPro: IPR015083 The N-terminal docking domain found in modular polyketide synthase assumes an alpha-helical structure, wherein two alpha-helices are connected by a short loop. Two such N-terminal domains dimerise to form amphipathic parallel alpha-helical coiled coils: dimerisation is essential for protein function []. ; GO: 0016740 transferase activity, 0048037 cofactor binding; PDB: 2HG4_E.
Probab=22.92 E-value=1.3e+02 Score=15.79 Aligned_cols=19 Identities=32% Similarity=0.321 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043394 19 THAVDHVQLGTDALRTAKR 37 (90)
Q Consensus 19 e~A~~~Ve~A~~eL~kA~~ 37 (90)
++-.+|.+.+..+|.+|++
T Consensus 5 ~kLr~YLkr~t~eL~~~r~ 23 (27)
T PF08990_consen 5 DKLRDYLKRVTAELRRARR 23 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567899999999998865
No 130
>PF13376 OmdA: Bacteriocin-protection, YdeI or OmpD-Associated
Probab=22.91 E-value=96 Score=18.44 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=27.6
Q ss_pred ChhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 043394 3 NDEALINFRTISWMQVTHAVDHVQLGTDALRTAKRLQR 40 (90)
Q Consensus 3 ~~~~~~~~~~~~~~NVe~A~~~Ve~A~~eL~kA~~yQK 40 (90)
|.++..||++....+=-.-..++..|.++=.++.+.++
T Consensus 17 ~p~a~~~f~~l~~~~rr~~i~wi~~AK~~etR~kRi~~ 54 (63)
T PF13376_consen 17 NPEAKEFFESLTPSYRREYIRWINSAKTEETRAKRIAK 54 (63)
T ss_pred CHHHHHHHHHCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56788899988887777777788887766665554443
No 131
>PF15106 TMEM156: TMEM156 protein family
Probab=22.87 E-value=1.1e+02 Score=23.78 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 043394 47 MIAIILLLVIAIIIVLAVAI 66 (90)
Q Consensus 47 ciiiiiviIIlliIil~vl~ 66 (90)
-|.+++++|.++.+++++.+
T Consensus 177 TWYvLVllVfiflii~iI~K 196 (226)
T PF15106_consen 177 TWYVLVLLVFIFLIILIIYK 196 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555565655
No 132
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=22.75 E-value=3e+02 Score=24.25 Aligned_cols=30 Identities=10% Similarity=-0.019 Sum_probs=17.8
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 043394 12 TISWMQVTHAVDHVQLGTDALRTAKRLQRR 41 (90)
Q Consensus 12 ~~~~~NVe~A~~~Ve~A~~eL~kA~~yQKk 41 (90)
.+...+..++-...++..++.+||++.||.
T Consensus 284 klsea~~kd~ekKA~Eyee~vrKAEE~qK~ 313 (593)
T PRK15374 284 ALQEGRQAEMEKKSAEFQEETRKAEETNRI 313 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555566666677777777654
No 133
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=22.73 E-value=2.1e+02 Score=18.08 Aligned_cols=18 Identities=17% Similarity=0.160 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 043394 26 QLGTDALRTAKRLQRRSR 43 (90)
Q Consensus 26 e~A~~eL~kA~~yQKksR 43 (90)
|+-.+=|.|-++.||+.+
T Consensus 27 e~C~eil~ker~R~r~~~ 44 (64)
T COG4068 27 EECGEILNKERKRQRNFM 44 (64)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455666655555554
No 134
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.71 E-value=1.3e+02 Score=23.19 Aligned_cols=18 Identities=6% Similarity=0.261 Sum_probs=10.5
Q ss_pred hhcccccccchHHHHHHH
Q 043394 7 LINFRTISWMQVTHAVDH 24 (90)
Q Consensus 7 ~~~~~~~~~~NVe~A~~~ 24 (90)
.+-.++|-..|||+..|+
T Consensus 134 v~evk~vM~eNIekvldR 151 (217)
T KOG0859|consen 134 VTEVKGVMMENIEKVLDR 151 (217)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344455556677766655
No 135
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=22.67 E-value=89 Score=24.05 Aligned_cols=9 Identities=33% Similarity=0.375 Sum_probs=4.1
Q ss_pred hhccccccc
Q 043394 65 AIERADTEA 73 (90)
Q Consensus 65 l~~~~~~~~ 73 (90)
+..++..+.
T Consensus 293 li~Rrr~~~ 301 (306)
T PF01299_consen 293 LIGRRRSRA 301 (306)
T ss_pred eeEeccccc
Confidence 334454444
No 136
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=22.12 E-value=1.1e+02 Score=24.09 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccceec
Q 043394 47 MIAIILLLVIAIIIVLAVAIERADTEAVVG 76 (90)
Q Consensus 47 ciiiiiviIIlliIil~vl~~~~~~~~~~~ 76 (90)
|+.++.+++.+..+++.+.. |+..+..+|
T Consensus 212 ~ffilal~~avta~~lt~gT-~s~a~~~gg 240 (275)
T KOG4684|consen 212 LFFILALTVAVTAVILTMGT-ASVAPVFGG 240 (275)
T ss_pred HHHHHHHHHHHHHHHHHhhh-hhhccccch
Confidence 33333333444444443333 555554443
No 137
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=21.66 E-value=1.5e+02 Score=24.96 Aligned_cols=46 Identities=20% Similarity=0.044 Sum_probs=27.6
Q ss_pred hhcccccccc--h-----HHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHH
Q 043394 7 LINFRTISWM--Q-----VTHAVDHVQLGTDALRTAKRLQRRSRKCMMIAIIL 52 (90)
Q Consensus 7 ~~~~~~~~~~--N-----Ve~A~~~Ve~A~~eL~kA~~yQKksRKk~ciiiii 52 (90)
|.+|+++... + -+.-..|..++-++|-..-..=-.+|-|||+-++=
T Consensus 56 l~~f~~~~~~~~~~~~~~r~kH~~YL~~~Lr~Lp~~~~~LDASR~Wm~YWil~ 108 (423)
T KOG0365|consen 56 LQSFEEISDDDPRLEPIFRQKHLMYLDKMLRQLPSQYTCLDASRPWMCYWILN 108 (423)
T ss_pred HhhhhhhcccchhHHHHHHHHHHHHHHHHHHhCCCcccccccCcchhHHHHHH
Confidence 5556555441 1 33445666666666665555556789999865443
No 138
>PF03264 Cytochrom_NNT: NapC/NirT cytochrome c family, N-terminal region; InterPro: IPR005126 Within the NapC/NirT family of cytochrome c proteins, some members, such as NapC P33932 from SWISSPROT and NirT P24038 from SWISSPROT, bind four haem groups, while others, such as TorC P33226 from SWISSPROT, bind five haems. This family aligns the common N-terminal region that contains four haem-binding C-X(2)-CH motifs.; PDB: 2VR0_F 2J7A_C.
Probab=21.02 E-value=33 Score=24.15 Aligned_cols=9 Identities=11% Similarity=0.501 Sum_probs=0.7
Q ss_pred chhHHHHHH
Q 043394 43 RKCMMIAII 51 (90)
Q Consensus 43 RKk~ciiii 51 (90)
+||..++++
T Consensus 3 ~~~~~~~~~ 11 (173)
T PF03264_consen 3 KKWSLLLLL 11 (173)
T ss_dssp -------HS
T ss_pred chhHHHHHH
Confidence 344444333
No 139
>PF14221 DUF4330: Domain of unknown function (DUF4330)
Probab=20.96 E-value=55 Score=23.53 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhccccccceecCCcceeee
Q 043394 44 KCMMIAIILLLVIAIIIVLAVAIERADTEAVVGPGALRTVE 84 (90)
Q Consensus 44 Kk~ciiiiiviIIlliIil~vl~~~~~~~~~~~~~~~~~~~ 84 (90)
|.-.+=++++++++++++.+.++|...+++ ..++-..+|
T Consensus 13 kiniiDl~~~lvvl~v~~g~~~~~~~s~~~--a~~~~~~ve 51 (168)
T PF14221_consen 13 KINIIDLLAILVVLAVVVGIFWKPGLSGSV--AQGSTKPVE 51 (168)
T ss_pred eEeHHHHHHHHHHHHHhheeEEEecccccc--ccCCCCceE
Confidence 444444555555555555555666554444 224555444
No 140
>PF12166 DUF3595: Protein of unknown function (DUF3595); InterPro: IPR021999 This family of proteins is functionally uncharacterised.This family of proteins is found in eukaryotes. Proteins in this family are typically between 578 and 2525 amino acids in length.
Probab=20.94 E-value=1.5e+02 Score=23.67 Aligned_cols=25 Identities=4% Similarity=0.096 Sum_probs=12.5
Q ss_pred cchHHHHHHHHHH--HHHHHHHHHHHh
Q 043394 15 WMQVTHAVDHVQL--GTDALRTAKRLQ 39 (90)
Q Consensus 15 ~~NVe~A~~~Ve~--A~~eL~kA~~yQ 39 (90)
|-.+|+...++-. ...+-++...++
T Consensus 27 w~~~Edi~~~l~~~kc~~~~~~~~~~~ 53 (422)
T PF12166_consen 27 WFKLEDIYANLFIVKCWRESEKRYPRP 53 (422)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhccccc
Confidence 5566666665554 333444443333
No 141
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=20.74 E-value=4.6 Score=26.62 Aligned_cols=7 Identities=29% Similarity=0.653 Sum_probs=0.0
Q ss_pred hhhcchh
Q 043394 39 QRRSRKC 45 (90)
Q Consensus 39 QKksRKk 45 (90)
+++.|+|
T Consensus 61 ~rkKrrw 67 (81)
T PF14812_consen 61 PRKKRRW 67 (81)
T ss_dssp -------
T ss_pred ccccchh
Confidence 3444444
No 142
>PF01407 Gemini_AL3: Geminivirus AL3 protein; InterPro: IPR000657 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. Geminiviruses contain three ORFs (designated AL1, AL2, and AL3) that overlap and are specified by multiple polycistronic mRNAs. The AL3 protein comprises approximately 0.05% of the cellular proteins and is present in the soluble and organelle fractions []. AL3 may form oligomers []. Immunoprecipitation of AL3 in a baculovirus expression system extracts expressing both AL1 and AL3 showed that the two proteins also complex with each other. The AL3 protein is involved in viral replication. ; GO: 0016032 viral reproduction
Probab=20.60 E-value=59 Score=22.91 Aligned_cols=21 Identities=43% Similarity=0.397 Sum_probs=18.7
Q ss_pred hhhcccccccchHHHHHHHHH
Q 043394 6 ALINFRTISWMQVTHAVDHVQ 26 (90)
Q Consensus 6 ~~~~~~~~~~~NVe~A~~~Ve 26 (90)
-|||.-.|+.+||-.|.++|=
T Consensus 92 yL~nLGvISINnVIrav~hvl 112 (120)
T PF01407_consen 92 YLDNLGVISINNVIRAVNHVL 112 (120)
T ss_pred HHHhcCceeehhHHHHHHhhh
Confidence 589999999999999999873
No 143
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.59 E-value=77 Score=26.28 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcc
Q 043394 44 KCMMIAIILLLVIAIIIVLAVAIER 68 (90)
Q Consensus 44 Kk~ciiiiiviIIlliIil~vl~~~ 68 (90)
+|+.++++.+++++.+++.+++..+
T Consensus 189 ~~~vl~~~fvl~tlaivLFPLWP~~ 213 (372)
T KOG2927|consen 189 MWQVLGVLFVLVTLAIVLFPLWPRR 213 (372)
T ss_pred hHHHHHHHHHHHHHHHHhcccCcHH
Confidence 3444444444444444444444444
No 144
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=20.21 E-value=1.2e+02 Score=23.59 Aligned_cols=20 Identities=20% Similarity=0.415 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHH----Hhhhcchh
Q 043394 26 QLGTDALRTAKR----LQRRSRKC 45 (90)
Q Consensus 26 e~A~~eL~kA~~----yQKksRKk 45 (90)
++++.||+|+.. .||++||-
T Consensus 125 kk~R~elKk~~~dt~klqkk~rKg 148 (231)
T cd07643 125 KKARQEIKKKSSDTIRLQKKARKG 148 (231)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcc
Confidence 778888886653 67777663
No 145
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=20.13 E-value=1.1e+02 Score=19.67 Aligned_cols=10 Identities=30% Similarity=0.381 Sum_probs=4.6
Q ss_pred ccccceecCC
Q 043394 69 ADTEAVVGPG 78 (90)
Q Consensus 69 ~~~~~~~~~~ 78 (90)
+.-+..++|+
T Consensus 22 Sdag~~y~p~ 31 (71)
T PF04202_consen 22 SDAGYYYYPG 31 (71)
T ss_pred ecCccccCCC
Confidence 3334455554
Done!