Query 043394
Match_columns 90
No_of_seqs 110 out of 574
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 07:30:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hd7_B Syntaxin-1A; membrane p 99.6 4.1E-16 1.4E-20 104.7 6.9 59 4-66 48-106 (109)
2 1jth_B Syntaxin 1A; coiled-coi 99.1 1.8E-11 6E-16 77.3 3.1 41 4-48 37-77 (77)
3 2nps_B Syntaxin 13, vesicle-as 99.0 1.9E-10 6.5E-15 71.6 4.0 39 4-46 33-71 (71)
4 1sfc_B Protein (syntaxin 1A), 98.5 3.6E-08 1.2E-12 62.9 2.9 36 4-43 48-83 (83)
5 1dn1_B Syntaxin 1A, syntaxin b 98.5 1.3E-09 4.5E-14 81.6 -4.8 41 4-48 227-267 (267)
6 3b5n_B Protein SSO1; snare com 98.3 3.3E-07 1.1E-11 56.6 3.5 33 4-40 37-69 (69)
7 3c98_B Syntaxin-1A; protein co 97.9 1.9E-07 6.5E-12 66.4 -4.8 33 16-48 247-279 (279)
8 2xhe_B Syntaxin1; exocytosis, 97.7 1.3E-06 4.5E-11 65.0 -3.0 36 4-43 244-279 (279)
9 1n7s_B Syntaxin 1A; neuronal s 97.5 5.2E-05 1.8E-09 46.4 2.1 29 4-36 39-67 (68)
10 1gl2_B Syntaxin 7; membrane pr 97.4 6E-05 2E-09 45.9 2.3 30 4-37 36-65 (65)
11 3hd7_A Vesicle-associated memb 95.1 0.082 2.8E-06 33.8 6.4 38 6-43 13-57 (91)
12 3hd7_B Syntaxin-1A; membrane p 88.0 2.4 8.3E-05 27.5 6.9 43 17-59 50-96 (109)
13 3hd7_A Vesicle-associated memb 83.8 2.5 8.7E-05 26.7 5.1 24 18-41 38-62 (91)
14 3b5n_C Protein transport prote 64.8 7.2 0.00025 23.8 3.4 32 4-39 39-70 (70)
15 1nhl_A Synaptosomal-associated 55.9 9.8 0.00033 21.7 2.7 25 5-33 28-52 (54)
16 1wcr_A PTS system, N, N'-diace 37.1 38 0.0013 21.9 3.5 27 15-41 31-57 (103)
17 3k1s_A PTS system, cellobiose- 36.9 37 0.0013 22.2 3.5 27 15-41 35-61 (109)
18 2e2a_A Protein (enzyme IIA); h 36.6 39 0.0013 21.9 3.5 27 15-41 33-59 (105)
19 3l8r_A PTCA, putative PTS syst 32.8 47 0.0016 22.2 3.5 27 15-41 50-76 (120)
20 1sfc_A VAMP 2, protein (synapt 32.0 57 0.0019 20.6 3.7 39 6-44 38-83 (96)
21 1n7s_C SNAP-25A; neuronal snar 29.0 44 0.0015 20.4 2.7 25 5-33 51-75 (79)
22 3n27_A Fusion glycoprotein F0, 27.8 61 0.0021 20.5 3.2 24 13-37 51-74 (80)
23 2jwa_A Receptor tyrosine-prote 24.7 67 0.0023 18.0 2.7 7 47-53 14-20 (44)
24 1svf_B Protein (fusion glycopr 24.4 90 0.0031 16.7 3.6 22 17-38 13-34 (38)
25 3b5n_A Synaptobrevin homolog 1 22.2 93 0.0032 17.7 3.1 39 6-44 10-55 (61)
26 1gl2_A Endobrevin; membrane pr 20.1 1E+02 0.0035 17.7 3.1 39 6-44 17-62 (65)
No 1
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.64 E-value=4.1e-16 Score=104.66 Aligned_cols=59 Identities=25% Similarity=0.379 Sum_probs=50.7
Q ss_pred hhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHhhh
Q 043394 4 DEALINFRTISWMQVTHAVDHVQLGTDALRTAKRLQRRSRKCMMIAIILLLVIAIIIVLAVAI 66 (90)
Q Consensus 4 ~~~~~~~~~~~~~NVe~A~~~Ve~A~~eL~kA~~yQKksRKk~ciiiiiviIIlliIil~vl~ 66 (90)
.|.+||++ +|+++|.+||++|++||++|.+|||++|||+||++++++++++++.+++..
T Consensus 48 ge~Id~Ie----~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l~~~~i~~~i~~~~~~~ 106 (109)
T 3hd7_B 48 GEMIDRIE----YNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIIIASTIGG 106 (109)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehHHHHHHHHHHHHHHhcc
Confidence 46788888 899999999999999999999999999999999888877776666555544
No 2
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.15 E-value=1.8e-11 Score=77.30 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=28.9
Q ss_pred hhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHhhhcchhHHH
Q 043394 4 DEALINFRTISWMQVTHAVDHVQLGTDALRTAKRLQRRSRKCMMI 48 (90)
Q Consensus 4 ~~~~~~~~~~~~~NVe~A~~~Ve~A~~eL~kA~~yQKksRKk~ci 48 (90)
.|.+|+|+ +||++|.+||++|+.+|.+|.+|||++|||+||
T Consensus 37 ge~id~Ie----~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~~i 77 (77)
T 1jth_B 37 GEMIDRIE----YNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 77 (77)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred hhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccC
Confidence 46788888 899999999999999999999999999999986
No 3
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.03 E-value=1.9e-10 Score=71.63 Aligned_cols=39 Identities=28% Similarity=0.368 Sum_probs=33.9
Q ss_pred hhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHhhhcchhH
Q 043394 4 DEALINFRTISWMQVTHAVDHVQLGTDALRTAKRLQRRSRKCM 46 (90)
Q Consensus 4 ~~~~~~~~~~~~~NVe~A~~~Ve~A~~eL~kA~~yQKksRKk~ 46 (90)
.|.+|+|+ +||++|.+||++|+.+|.+|.+|||++|||+
T Consensus 33 ge~id~Ie----~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~~ 71 (71)
T 2nps_B 33 GDLIDSIE----ANVESSEVHVERASDQLQRAAYYQKKSRKKM 71 (71)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred hhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 46788888 8999999999999999999999999999985
No 4
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=98.55 E-value=3.6e-08 Score=62.91 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=30.8
Q ss_pred hhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043394 4 DEALINFRTISWMQVTHAVDHVQLGTDALRTAKRLQRRSR 43 (90)
Q Consensus 4 ~~~~~~~~~~~~~NVe~A~~~Ve~A~~eL~kA~~yQKksR 43 (90)
.|.+|+|+ +||++|.+||++|+.+|.+|.+|||++|
T Consensus 48 ge~id~Ie----~nv~~a~~~v~~g~~eL~kA~~~qk~~r 83 (83)
T 1sfc_B 48 GEMIDRIE----YNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (83)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred hhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 46788888 8999999999999999999999999987
No 5
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=98.53 E-value=1.3e-09 Score=81.59 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=19.6
Q ss_pred hhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHhhhcchhHHH
Q 043394 4 DEALINFRTISWMQVTHAVDHVQLGTDALRTAKRLQRRSRKCMMI 48 (90)
Q Consensus 4 ~~~~~~~~~~~~~NVe~A~~~Ve~A~~eL~kA~~yQKksRKk~ci 48 (90)
.|.+|+|+ +||++|.+||++|+.+|.+|.+|||++|||+||
T Consensus 227 g~~id~Ie----~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk~~~ 267 (267)
T 1dn1_B 227 GEMIDRIE----YNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 267 (267)
T ss_dssp CSGGGCHH----HHHHTCCCCCCCCC-------------------
T ss_pred hHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 36778888 899999999999999999999999999999986
No 6
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=98.34 E-value=3.3e-07 Score=56.58 Aligned_cols=33 Identities=21% Similarity=0.151 Sum_probs=30.5
Q ss_pred hhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 043394 4 DEALINFRTISWMQVTHAVDHVQLGTDALRTAKRLQR 40 (90)
Q Consensus 4 ~~~~~~~~~~~~~NVe~A~~~Ve~A~~eL~kA~~yQK 40 (90)
.|.+|+|+ +||++|.+||++|+.+|.+|.+|||
T Consensus 37 ge~id~Ie----~nv~~a~~~v~~g~~~L~kA~~~qr 69 (69)
T 3b5n_B 37 QENVDVID----KNVEDAQLDVEQGVGHTDKAVKSAR 69 (69)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46788888 8999999999999999999999996
No 7
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=97.90 E-value=1.9e-07 Score=66.36 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=13.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhcchhHHH
Q 043394 16 MQVTHAVDHVQLGTDALRTAKRLQRRSRKCMMI 48 (90)
Q Consensus 16 ~NVe~A~~~Ve~A~~eL~kA~~yQKksRKk~ci 48 (90)
.||+++.++|++|+++|.+|.+||+++||||||
T Consensus 247 ~nv~~~~~~v~~~~~el~~A~~~q~~~Rkkk~i 279 (279)
T 3c98_B 247 YNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 279 (279)
T ss_dssp HHHHTCCCCCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 599999999999999999999999999999985
No 8
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=97.71 E-value=1.3e-06 Score=64.98 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=15.6
Q ss_pred hhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043394 4 DEALINFRTISWMQVTHAVDHVQLGTDALRTAKRLQRRSR 43 (90)
Q Consensus 4 ~~~~~~~~~~~~~NVe~A~~~Ve~A~~eL~kA~~yQKksR 43 (90)
.|.+|+|+ +||++|.+||++|+.+|.+|.+|||++|
T Consensus 244 g~~id~Ie----~nv~~~~~~v~~~~~~l~kA~~~qk~~R 279 (279)
T 2xhe_B 244 GEMIDRIE----FSVEQSHNYVKKATEQVVQARHYQESAR 279 (279)
T ss_dssp CSSTTCHH----HHHHTCCCCC------------------
T ss_pred hHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 46678887 7999999999999999999999999987
No 9
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=97.46 E-value=5.2e-05 Score=46.36 Aligned_cols=29 Identities=28% Similarity=0.319 Sum_probs=26.2
Q ss_pred hhhhhcccccccchHHHHHHHHHHHHHHHHHHH
Q 043394 4 DEALINFRTISWMQVTHAVDHVQLGTDALRTAK 36 (90)
Q Consensus 4 ~~~~~~~~~~~~~NVe~A~~~Ve~A~~eL~kA~ 36 (90)
.|.+|+|+ +||++|.+||++|+.+|.+|.
T Consensus 39 ge~id~Ie----~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 39 GEMIDRIE----YNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Confidence 46788888 899999999999999999995
No 10
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=97.45 E-value=6e-05 Score=45.88 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=25.6
Q ss_pred hhhhhcccccccchHHHHHHHHHHHHHHHHHHHH
Q 043394 4 DEALINFRTISWMQVTHAVDHVQLGTDALRTAKR 37 (90)
Q Consensus 4 ~~~~~~~~~~~~~NVe~A~~~Ve~A~~eL~kA~~ 37 (90)
.|.+|+|+ +||++|.+||++|+++|.+|.+
T Consensus 36 ge~id~Ie----~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 36 GDVIDSIE----ANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHcC
Confidence 36788888 8999999999999999999964
No 11
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=95.09 E-value=0.082 Score=33.82 Aligned_cols=38 Identities=8% Similarity=0.078 Sum_probs=19.6
Q ss_pred hhhcccccccchHHHHHHH-------HHHHHHHHHHHHHHhhhcc
Q 043394 6 ALINFRTISWMQVTHAVDH-------VQLGTDALRTAKRLQRRSR 43 (90)
Q Consensus 6 ~~~~~~~~~~~NVe~A~~~-------Ve~A~~eL~kA~~yQKksR 43 (90)
+++....|-..|++...++ ++++..=-..|..+++++|
T Consensus 13 ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~ 57 (91)
T 3hd7_A 13 QVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAA 57 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555565554433 3444444445666666655
No 12
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=88.04 E-value=2.4 Score=27.47 Aligned_cols=43 Identities=14% Similarity=0.204 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcc----hhHHHHHHHHHHHHHH
Q 043394 17 QVTHAVDHVQLGTDALRTAKRLQRRSR----KCMMIAIILLLVIAII 59 (90)
Q Consensus 17 NVe~A~~~Ve~A~~eL~kA~~yQKksR----Kk~ciiiiiviIIlli 59 (90)
.+++..++++++...+++|.+.=+++. +...+.++++++++++
T Consensus 50 ~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l~~~~i~ 96 (109)
T 3hd7_B 50 MIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVIL 96 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehHHHHHHH
Confidence 345556677777777777766655442 3345555554443333
No 13
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=83.77 E-value=2.5 Score=26.68 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhhh
Q 043394 18 VTHAVDHVQLGTDALR-TAKRLQRR 41 (90)
Q Consensus 18 Ve~A~~~Ve~A~~eL~-kA~~yQKk 41 (90)
+++=++..+....+-+ +|.+..++
T Consensus 38 L~~kt~~L~~~s~~F~~~A~~l~rk 62 (91)
T 3hd7_A 38 LDDRADALQAGASQFETSAAKLKRK 62 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444 44444444
No 14
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=64.83 E-value=7.2 Score=23.78 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=24.2
Q ss_pred hhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 043394 4 DEALINFRTISWMQVTHAVDHVQLGTDALRTAKRLQ 39 (90)
Q Consensus 4 ~~~~~~~~~~~~~NVe~A~~~Ve~A~~eL~kA~~yQ 39 (90)
.|+|.|++ .|+..+......|.+.|..=..||
T Consensus 39 gEqL~rtE----~~ld~i~~~~k~aek~l~~Lk~~~ 70 (70)
T 3b5n_C 39 SEQLNNVE----GNLDLMKVQNKVADEKVAELKKLQ 70 (70)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhcC
Confidence 47888888 788888888888888777665554
No 15
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=55.86 E-value=9.8 Score=21.73 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=16.2
Q ss_pred hhhhcccccccchHHHHHHHHHHHHHHHH
Q 043394 5 EALINFRTISWMQVTHAVDHVQLGTDALR 33 (90)
Q Consensus 5 ~~~~~~~~~~~~NVe~A~~~Ve~A~~eL~ 33 (90)
|||++++ .++.....++..|.+.|.
T Consensus 28 Eql~r~~----~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 28 EQLNRIE----EGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHH----hHHHHHHhHHHHHHHHHh
Confidence 5666666 666666666666666553
No 16
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=37.11 E-value=38 Score=21.91 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=23.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhh
Q 043394 15 WMQVTHAVDHVQLGTDALRTAKRLQRR 41 (90)
Q Consensus 15 ~~NVe~A~~~Ve~A~~eL~kA~~yQKk 41 (90)
-.|.+.|....++|++++.+|.+.|-+
T Consensus 31 ~g~fe~A~~~l~eA~~~l~~AH~~Qt~ 57 (103)
T 1wcr_A 31 QGDFAAAKAMMDQSRMALNEAHLVQTK 57 (103)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999998864
No 17
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=36.92 E-value=37 Score=22.16 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=24.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhh
Q 043394 15 WMQVTHAVDHVQLGTDALRTAKRLQRR 41 (90)
Q Consensus 15 ~~NVe~A~~~Ve~A~~eL~kA~~yQKk 41 (90)
-.|.+.|....++|++++.+|.+.|-+
T Consensus 35 ~gdfe~A~~~l~eA~~~l~~AH~~QT~ 61 (109)
T 3k1s_A 35 QGKMAEADEAMVKAKEAINEAHHFQTE 61 (109)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999998864
No 18
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=36.56 E-value=39 Score=21.92 Aligned_cols=27 Identities=15% Similarity=-0.034 Sum_probs=23.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhh
Q 043394 15 WMQVTHAVDHVQLGTDALRTAKRLQRR 41 (90)
Q Consensus 15 ~~NVe~A~~~Ve~A~~eL~kA~~yQKk 41 (90)
-.|.+.|....++|++++.+|.+.|-+
T Consensus 33 ~g~fe~A~~~l~eA~~~l~~AH~~Qt~ 59 (105)
T 2e2a_A 33 NGDFAKADSLVVEAGSCIAEAHSSQTG 59 (105)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999998864
No 19
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=32.85 E-value=47 Score=22.18 Aligned_cols=27 Identities=22% Similarity=0.104 Sum_probs=23.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhh
Q 043394 15 WMQVTHAVDHVQLGTDALRTAKRLQRR 41 (90)
Q Consensus 15 ~~NVe~A~~~Ve~A~~eL~kA~~yQKk 41 (90)
-.|.+.|....++|+++|.+|.+.|-+
T Consensus 50 ~gdfe~A~~~l~eA~e~l~~AH~~QT~ 76 (120)
T 3l8r_A 50 EKNYILAEQKLQEANDELLKAHQAQTD 76 (120)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999998864
No 20
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=31.97 E-value=57 Score=20.55 Aligned_cols=39 Identities=10% Similarity=0.103 Sum_probs=22.5
Q ss_pred hhhcccccccchHHHHHHH-------HHHHHHHHHHHHHHhhhcch
Q 043394 6 ALINFRTISWMQVTHAVDH-------VQLGTDALRTAKRLQRRSRK 44 (90)
Q Consensus 6 ~~~~~~~~~~~NVe~A~~~-------Ve~A~~eL~kA~~yQKksRK 44 (90)
+|+....|-..||+...++ ++++..=-..|..+++++++
T Consensus 38 eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~k 83 (96)
T 1sfc_A 38 QVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAK 83 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666655544 44445555567778877763
No 21
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=28.98 E-value=44 Score=20.40 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=13.9
Q ss_pred hhhhcccccccchHHHHHHHHHHHHHHHH
Q 043394 5 EALINFRTISWMQVTHAVDHVQLGTDALR 33 (90)
Q Consensus 5 ~~~~~~~~~~~~NVe~A~~~Ve~A~~eL~ 33 (90)
|+|.+++ .++.....++..|.+.|.
T Consensus 51 Eql~r~~----~~ld~i~~~l~~a~k~L~ 75 (79)
T 1n7s_C 51 EQLDRVE----EGMNHINQDMKEAEKNLK 75 (79)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHH----hHHHHHHhHHHHHHHHHh
Confidence 5555555 555555555555555543
No 22
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=27.79 E-value=61 Score=20.48 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=18.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHH
Q 043394 13 ISWMQVTHAVDHVQLGTDALRTAKR 37 (90)
Q Consensus 13 ~~~~NVe~A~~~Ve~A~~eL~kA~~ 37 (90)
|++ |...|..+.|+...+|+|+++
T Consensus 51 is~-~l~~a~~~l~~sk~~~~~~~~ 74 (80)
T 3n27_A 51 ISI-ELNKAKSDLEESKEWIRRSNQ 74 (80)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhh-hHhHHHhhHHHHHHHHHHHHH
Confidence 444 778888888888888888764
No 23
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=24.75 E-value=67 Score=17.99 Aligned_cols=7 Identities=14% Similarity=0.349 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 043394 47 MIAIILL 53 (90)
Q Consensus 47 ciiiiiv 53 (90)
.....+.
T Consensus 14 Ia~~vVG 20 (44)
T 2jwa_A 14 IISAVVG 20 (44)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 3333333
No 24
>1svf_B Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=24.39 E-value=90 Score=16.68 Aligned_cols=22 Identities=5% Similarity=0.042 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 043394 17 QVTHAVDHVQLGTDALRTAKRL 38 (90)
Q Consensus 17 NVe~A~~~Ve~A~~eL~kA~~y 38 (90)
++.++...+++|...|+++.++
T Consensus 13 eL~~~n~sl~~A~~~l~~Sn~~ 34 (38)
T 1svf_B 13 NLAAVNKSLSDALQHLAQSDTY 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777777665
No 25
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=22.20 E-value=93 Score=17.68 Aligned_cols=39 Identities=8% Similarity=0.115 Sum_probs=22.6
Q ss_pred hhhcccccccchHHHHHHH-------HHHHHHHHHHHHHHhhhcch
Q 043394 6 ALINFRTISWMQVTHAVDH-------VQLGTDALRTAKRLQRRSRK 44 (90)
Q Consensus 6 ~~~~~~~~~~~NVe~A~~~-------Ve~A~~eL~kA~~yQKksRK 44 (90)
+|+....|-..||+...++ ++++..=-..|..|++++++
T Consensus 10 ~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~ 55 (61)
T 3b5n_A 10 EIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANR 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555666665544 44444444557777877764
No 26
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=20.11 E-value=1e+02 Score=17.75 Aligned_cols=39 Identities=15% Similarity=0.151 Sum_probs=22.7
Q ss_pred hhhcccccccchHHHHHHHHH-------HHHHHHHHHHHHhhhcch
Q 043394 6 ALINFRTISWMQVTHAVDHVQ-------LGTDALRTAKRLQRRSRK 44 (90)
Q Consensus 6 ~~~~~~~~~~~NVe~A~~~Ve-------~A~~eL~kA~~yQKksRK 44 (90)
+|+....|-..||+...+.=+ ++..=-..|..|++++++
T Consensus 17 ~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~ 62 (65)
T 1gl2_A 17 EVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQK 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666667766655544 344444456667777665
Done!