Query 043394
Match_columns 90
No_of_seqs 110 out of 574
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 07:30:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043394.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043394hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cipa1 a.66.1.1 (A:61-181) Tr 69.4 1.5 0.00011 26.9 2.6 32 2-33 1-32 (121)
2 d1tada1 a.66.1.1 (A:57-177) Tr 65.9 1.5 0.00011 27.0 2.0 31 2-32 1-31 (121)
3 d1zcba1 a.66.1.1 (A:76-201) Tr 63.0 2 0.00015 26.4 2.2 31 2-32 1-31 (126)
4 d2bcjq1 a.66.1.1 (Q:67-183) Tr 62.2 2.6 0.00019 25.7 2.6 32 2-33 1-32 (117)
5 d1zcaa1 a.66.1.1 (A:83-204) Tr 58.3 2.5 0.00018 25.9 2.0 31 2-32 1-31 (122)
6 d2e2aa_ a.7.2.1 (A:) Enzyme II 39.4 16 0.0012 22.1 3.7 27 15-41 33-59 (104)
7 d1guqa2 d.13.1.2 (A:178-348) G 33.1 17 0.0013 22.4 3.1 23 27-49 1-23 (171)
8 d2hyda2 f.37.1.1 (A:1-323) Put 31.1 55 0.004 20.2 6.2 32 4-35 204-236 (323)
9 d1oedb_ f.36.1.1 (B:) Acetylch 28.9 22 0.0016 22.9 3.1 29 17-45 184-212 (250)
10 d1l7va_ f.22.1.1 (A:) ABC tran 19.1 50 0.0036 23.0 3.6 28 35-62 5-32 (324)
No 1
>d1cipa1 a.66.1.1 (A:61-181) Transducin (alpha subunit), insertion domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=69.41 E-value=1.5 Score=26.86 Aligned_cols=32 Identities=6% Similarity=0.299 Sum_probs=27.2
Q ss_pred CChhhhhcccccccchHHHHHHHHHHHHHHHH
Q 043394 2 FNDEALINFRTISWMQVTHAVDHVQLGTDALR 33 (90)
Q Consensus 2 ~~~~~~~~~~~~~~~NVe~A~~~Ve~A~~eL~ 33 (90)
|++|++.+|+.+++.|+-.+...+=+|-..+.
T Consensus 1 Fs~eE~~~~~~~I~~Ni~~~~~~ll~a~~~l~ 32 (121)
T d1cipa1 1 YSEEECKQYKAVVYSNTIQSIIAIIRAMGRLK 32 (121)
T ss_dssp CCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88999999999999999998877777666554
No 2
>d1tada1 a.66.1.1 (A:57-177) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=65.86 E-value=1.5 Score=27.04 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=26.4
Q ss_pred CChhhhhcccccccchHHHHHHHHHHHHHHH
Q 043394 2 FNDEALINFRTISWMQVTHAVDHVQLGTDAL 32 (90)
Q Consensus 2 ~~~~~~~~~~~~~~~NVe~A~~~Ve~A~~eL 32 (90)
|++|++.+++.+++.|+-++...+=+|-.+|
T Consensus 1 Fs~eE~~~~~~~I~~Nii~~m~~li~a~~~l 31 (121)
T d1tada1 1 YSLEECLEFIAIIYGNTLQSILAIVRAMTTL 31 (121)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHc
Confidence 8899999999999999998877777766555
No 3
>d1zcba1 a.66.1.1 (A:76-201) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=62.95 E-value=2 Score=26.41 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=26.7
Q ss_pred CChhhhhcccccccchHHHHHHHHHHHHHHH
Q 043394 2 FNDEALINFRTISWMQVTHAVDHVQLGTDAL 32 (90)
Q Consensus 2 ~~~~~~~~~~~~~~~NVe~A~~~Ve~A~~eL 32 (90)
|++|++.+|+.+++.|+-.+....=+|-+.|
T Consensus 1 Fs~~Er~~~r~~I~~Nii~~m~~ll~a~~~l 31 (126)
T d1zcba1 1 FDQRAREEFRPTIYSNVIKGMRVLVDAREKL 31 (126)
T ss_dssp CCHHHHHTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHc
Confidence 8899999999999999998888777776654
No 4
>d2bcjq1 a.66.1.1 (Q:67-183) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=62.19 E-value=2.6 Score=25.72 Aligned_cols=32 Identities=19% Similarity=0.381 Sum_probs=27.5
Q ss_pred CChhhhhcccccccchHHHHHHHHHHHHHHHH
Q 043394 2 FNDEALINFRTISWMQVTHAVDHVQLGTDALR 33 (90)
Q Consensus 2 ~~~~~~~~~~~~~~~NVe~A~~~Ve~A~~eL~ 33 (90)
|.+|.+.+|+.+++.|+-.+...+=+|...+.
T Consensus 1 fs~eE~~~~~~~I~~Nii~~m~~ll~a~~~l~ 32 (117)
T d2bcjq1 1 YSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLK 32 (117)
T ss_dssp CCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 78999999999999999988888877766654
No 5
>d1zcaa1 a.66.1.1 (A:83-204) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=58.26 E-value=2.5 Score=25.94 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=26.3
Q ss_pred CChhhhhcccccccchHHHHHHHHHHHHHHH
Q 043394 2 FNDEALINFRTISWMQVTHAVDHVQLGTDAL 32 (90)
Q Consensus 2 ~~~~~~~~~~~~~~~NVe~A~~~Ve~A~~eL 32 (90)
|.+|++.+++.+++.|+-++....=+|-..+
T Consensus 1 Fs~~E~~~~r~~I~~Nii~~~~~Li~am~~l 31 (122)
T d1zcaa1 1 FDQKALLEFRDTIFDNILKGSRVLVDARDKL 31 (122)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHc
Confidence 7899999999999999998887777776554
No 6
>d2e2aa_ a.7.2.1 (A:) Enzyme IIa from lactose specific PTS, IIa-lac {Lactococcus lactis [TaxId: 1358]}
Probab=39.42 E-value=16 Score=22.12 Aligned_cols=27 Identities=15% Similarity=-0.034 Sum_probs=23.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhh
Q 043394 15 WMQVTHAVDHVQLGTDALRTAKRLQRR 41 (90)
Q Consensus 15 ~~NVe~A~~~Ve~A~~eL~kA~~yQKk 41 (90)
-.|.+.|-...++|.+++.+|.+.|-+
T Consensus 33 ~gdfe~A~~~l~eA~e~l~~AH~~qt~ 59 (104)
T d2e2aa_ 33 NGDFAKADSLVVEAGSCIAEAHSSQTG 59 (104)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999998864
No 7
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]}
Probab=33.09 E-value=17 Score=22.41 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhhcchhHHHH
Q 043394 27 LGTDALRTAKRLQRRSRKCMMIA 49 (90)
Q Consensus 27 ~A~~eL~kA~~yQKksRKk~cii 49 (90)
++.+|++.+++|..+..++.+|=
T Consensus 1 ~~~~e~~~~~~y~~~~~~clfcd 23 (171)
T d1guqa2 1 EAEREDRLQKEYFAEQKSPMLVD 23 (171)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHH
T ss_pred CHhHHHHHHHHHHHHhCCCcHHH
Confidence 36789999999999987766553
No 8
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=31.06 E-value=55 Score=20.17 Aligned_cols=32 Identities=6% Similarity=0.090 Sum_probs=18.1
Q ss_pred hhhhhcccccccchHHHHH-HHHHHHHHHHHHH
Q 043394 4 DEALINFRTISWMQVTHAV-DHVQLGTDALRTA 35 (90)
Q Consensus 4 ~~~~~~~~~~~~~NVe~A~-~~Ve~A~~eL~kA 35 (90)
.|.+.|+++|...|.++-. +.-++..++..++
T Consensus 204 ~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~ 236 (323)
T d2hyda2 204 HERVQGISVVKSFAIEDNEAKNFDKKNTNFLTR 236 (323)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCchhhhHhhhccchhhhhcccccccch
Confidence 3667788888777766532 3344444444433
No 9
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=28.91 E-value=22 Score=22.91 Aligned_cols=29 Identities=14% Similarity=0.296 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 043394 17 QVTHAVDHVQLGTDALRTAKRLQRRSRKC 45 (90)
Q Consensus 17 NVe~A~~~Ve~A~~eL~kA~~yQKksRKk 45 (90)
+.++..++++.-++++++..+.++..+-|
T Consensus 184 ~~~~i~~~v~~i~~~~~~~~~~~~~~~EW 212 (250)
T d1oedb_ 184 DLKEAVEAIKYIAEQLESASEFDDLKKDW 212 (250)
T ss_dssp -----------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45566666666666677666666666656
No 10
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=19.13 E-value=50 Score=22.99 Aligned_cols=28 Identities=18% Similarity=0.399 Sum_probs=0.0
Q ss_pred HHHHhhhcchhHHHHHHHHHHHHHHHHH
Q 043394 35 AKRLQRRSRKCMMIAIILLLVIAIIIVL 62 (90)
Q Consensus 35 A~~yQKksRKk~ciiiiiviIIlliIil 62 (90)
+++.+|++++|..++.+++++..++-+.
T Consensus 5 ~~~~~r~~~~~l~~l~~ll~~~~~~sl~ 32 (324)
T d1l7va_ 5 ARQQQRQNIRWLLCLSVLMLLALLLSLC 32 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!