BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043397
(596 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s)
Length = 477
Score = 230 bits (587), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 157/506 (31%), Positives = 256/506 (50%), Gaps = 49/506 (9%)
Query: 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITT 168
M ++H+++EM P+ K GGL DV+ L A ++ G ++LP + I++ ++D +++
Sbjct: 1 MQVLHVSSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRG-VTDAQVVSR 59
Query: 169 YNSYHDGNWVATNAYHGV---VSSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRAC 225
+++ + Y+GV + P ++ P + + N++ + N L A
Sbjct: 60 RDTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHD-TNLFAYTDNVLRF------AL 112
Query: 226 LEWM---QVTGV----QPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYG 278
L W+ +G+ +PD++H H+W G P Y + + + V T+HN+ + G
Sbjct: 113 LGWVGAEMASGLDPFWRPDVVHAHDWHAGLAP-----AYLAARGRPAKSVFTVHNLAYQG 167
Query: 279 ECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPE---RLSLLKGGIVYSNAVVTVSPTYL 335
++ L S + H E ++S LK G+ Y++ + VSPTY
Sbjct: 168 MFYAHHMNDIQLPWSFFNI-----------HGLEFNGQISFLKAGLYYADHITAVSPTYA 216
Query: 336 KE----TLCSGWLASVLITHRD-KYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKIC 390
+E G + HR+ + G+LNG+D IW+P TD L +++ E K
Sbjct: 217 REITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAEN 276
Query: 391 KYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLG-NSPVHWV 449
K +Q +GLK + VPL ++RL +QKGL L+ A+ E GGQ+ LLG PV +
Sbjct: 277 KRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPV--L 334
Query: 450 QKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAV 509
Q+ F LA + + Y E SH + AD++LVPS +EPCGL Q+ G++YG +
Sbjct: 335 QEGF--LAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTL 392
Query: 510 PVVRKTGGLADTVFDVDDPSNHEK-ANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRI 568
P+VR+TGGLADTV D + + A+GFVFE + SL A+ RAF +P W +
Sbjct: 393 PLVRRTGGLADTVSDSSLENLADGVASGFVFEDSNAWSLLRAIRRAFV-LWSRPSLWRFV 451
Query: 569 VQKIMENDNSWNNAAGKYMEIYNSIR 594
++ M D SW AA Y E+Y ++
Sbjct: 452 QRQAMAMDFSWQVAAKSYRELYYRLK 477
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsb)
pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsc)
pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsd)
pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Dgm
Length = 485
Score = 230 bits (586), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 157/507 (30%), Positives = 256/507 (50%), Gaps = 49/507 (9%)
Query: 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITT 168
M ++H+ +EM P+ K GGL DV+ L A ++ G ++LP + I++ ++D +++
Sbjct: 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRG-VTDAQVVSR 59
Query: 169 YNSYHDGNWVATNAYHGV---VSSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRAC 225
+++ + Y+GV + P ++ P + + N++ + N L A
Sbjct: 60 RDTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHD-TNLFAYTDNVLRF------AL 112
Query: 226 LEWM---QVTGV----QPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYG 278
L W+ +G+ +PD++H H+W G P Y + + + V T+HN+ + G
Sbjct: 113 LGWVGAEMASGLDPFWRPDVVHAHDWHAGLAP-----AYLAARGRPAKSVFTVHNLAYQG 167
Query: 279 ECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPE---RLSLLKGGIVYSNAVVTVSPTYL 335
++ L S + H E ++S LK G+ Y++ + VSPTY
Sbjct: 168 MFYAHHMNDIQLPWSFFNI-----------HGLEFNGQISFLKAGLYYADHITAVSPTYA 216
Query: 336 KE----TLCSGWLASVLITHRD-KYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKIC 390
+E G + HR+ + G+LNG+D IW+P TD L +++ E K
Sbjct: 217 REITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAEN 276
Query: 391 KYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLG-NSPVHWV 449
K +Q +GLK + VPL ++RL +QKGL L+ A+ E GGQ+ LLG PV +
Sbjct: 277 KRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPV--L 334
Query: 450 QKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAV 509
Q+ F LA + + Y E SH + AD++LVPS +EPCGL Q+ G++YG +
Sbjct: 335 QEGF--LAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTL 392
Query: 510 PVVRKTGGLADTVFDVDDPSNHEK-ANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRI 568
P+VR+TGGLADTV D + + A+GFVFE + SL A+ RAF +P W +
Sbjct: 393 PLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFV-LWSRPSLWRFV 451
Query: 569 VQKIMENDNSWNNAAGKYMEIYNSIRV 595
++ M D SW AA Y E+Y +++
Sbjct: 452 QRQAMAMDFSWQVAAKSYRELYYRLKL 478
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Acceptor Analogue Heppso
pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Oligosaccharides
Length = 485
Score = 228 bits (580), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 156/507 (30%), Positives = 255/507 (50%), Gaps = 49/507 (9%)
Query: 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITT 168
M ++H+ +EM P+ K GGL DV+ L A ++ G ++LP + I++ ++D +++
Sbjct: 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRG-VTDAQVVSR 59
Query: 169 YNSYHDGNWVATNAYHGV---VSSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRAC 225
+++ + Y+GV + P ++ P + + N++ + N L A
Sbjct: 60 RDTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHD-TNLFAYTDNVLRF------AL 112
Query: 226 LEWM---QVTGV----QPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYG 278
L W+ +G+ +PD++H H+W G P Y + + + V T+HN+ + G
Sbjct: 113 LGWVGAEMASGLDPFWRPDVVHAHDWHAGLAP-----AYLAARGRPAKSVFTVHNLAYQG 167
Query: 279 ECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPE---RLSLLKGGIVYSNAVVTVSPTYL 335
++ L S + H E ++S LK G+ Y++ + VSPTY
Sbjct: 168 MFYAHHMNDIQLPWSFFNI-----------HGLEFNGQISFLKAGLYYADHITAVSPTYA 216
Query: 336 KE----TLCSGWLASVLITHRD-KYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKIC 390
+E G + HR+ + G+LNG+D IW+P TD L +++ E K
Sbjct: 217 REITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAEN 276
Query: 391 KYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLG-NSPVHWV 449
K +Q +GLK + VPL ++RL +QKGL L+ A+ E GGQ+ LLG PV +
Sbjct: 277 KRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPV--L 334
Query: 450 QKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAV 509
Q+ F LA + + Y E SH + AD++LVPS + PCGL Q+ G++YG +
Sbjct: 335 QEGF--LAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFAPCGLTQLYGLKYGTL 392
Query: 510 PVVRKTGGLADTVFDVDDPSNHEK-ANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRI 568
P+VR+TGGLADTV D + + A+GFVFE + SL A+ RAF +P W +
Sbjct: 393 PLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFV-LWSRPSLWRFV 451
Query: 569 VQKIMENDNSWNNAAGKYMEIYNSIRV 595
++ M D SW AA Y E+Y +++
Sbjct: 452 QRQAMAMDFSWQVAAKSYRELYYRLKL 478
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
pdb|1RZU|B Chain B, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
Length = 485
Score = 202 bits (514), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 143/497 (28%), Positives = 241/497 (48%), Gaps = 34/497 (6%)
Query: 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISD----LA 164
M+++ +++E+ P+ K GGL DVV L A + G ++P Y + K ++D
Sbjct: 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAV-KAAVTDPVKCFE 59
Query: 165 LITTYNSYHDGNWVATNAYHGVVSSIPVIFIEPSNQFF--KGKNVYGGSYNELEAYLFFS 222
D V ++ P + + GK+ Y ++ A L +
Sbjct: 60 FTDLLGEKADLLEVQHERLDLLILDAPAYYERSGGPYLGQTGKD-YPDNWKRFAA-LSLA 117
Query: 223 RACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQ 282
A + + G +PD++H H+WQ P+ M + + + P + LTIHN+ G+
Sbjct: 118 AARIGAGVLPGWRPDMVHAHDWQAAMTPVY---MRYAETPEIPSL-LTIHNIAFQGQFGA 173
Query: 283 EQLSKCGLDGSIYA--SVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLC 340
SK L + +E D +S LKGG+ + A+ TVSP+Y +E L
Sbjct: 174 NIFSKLALPAHAFGMEGIEYYND----------VSFLKGGLQTATALSTVSPSYAEEILT 223
Query: 341 SGW---LASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKG 397
+ + L V+ + GI+NGID +WNPATD + + A + + + K + +
Sbjct: 224 AEFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEH 283
Query: 398 LGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLA 457
+ +G+ PL I+RL QKG+ L+ A+ LGG++++LG V +
Sbjct: 284 FRIDDDGS-PLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVALEGALLAAAS 342
Query: 458 NLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG 517
H + + + Y+E LSH++ A D +++PS +EPCGL Q+ +RYG +PVV +TGG
Sbjct: 343 RHHGR---VGVAIGYNEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGG 399
Query: 518 LADTVFDVDDPSNHEK-ANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIMEND 576
LADTV D + + K A G F + L A+ R R++ D P+ W ++ + M++D
Sbjct: 400 LADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHD-PKLWTQMQKLGMKSD 458
Query: 577 NSWNNAAGKYMEIYNSI 593
SW +AG Y +Y+ +
Sbjct: 459 VSWEKSAGLYAALYSQL 475
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
pdb|1RZV|B Chain B, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
Length = 485
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 142/498 (28%), Positives = 235/498 (47%), Gaps = 38/498 (7%)
Query: 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISD----LAL 165
+++ +++E+ P+ K GGL DVV L A + G ++P Y + K ++D
Sbjct: 2 NVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAV-KAAVTDPVKCFEF 60
Query: 166 ITTYNSYHDGNWVATNAYHGVVSSIPVIFIEPSNQFF--KGKNVYGGSYNELEAYLFFSR 223
D V ++ P + + GK+ Y ++ A L +
Sbjct: 61 TDLLGEKADLLEVQHERLDLLILDAPAYYERSGGPYLGQTGKD-YPDNWKRFAA-LSLAA 118
Query: 224 ACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRI--VLTIHNMEHYGECR 281
A + + G +PD +H H+WQ P+ + Y + P I +LTIHN+ G+
Sbjct: 119 ARIGAGVLPGWRPDXVHAHDWQAAXTPV--YXRYA----ETPEIPSLLTIHNIAFQGQFG 172
Query: 282 QEQLSKCGLDGSIYA--SVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETL 339
SK L + +E D +S LKGG+ + A+ TVSP+Y +E L
Sbjct: 173 ANIFSKLALPAHAFGXEGIEYYND----------VSFLKGGLQTATALSTVSPSYAEEIL 222
Query: 340 CSGW---LASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQK 396
+ + L V+ + GI+NGID +WNPATD + + A + + + K + +
Sbjct: 223 TAEFGXGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAE 282
Query: 397 GLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDL 456
+ +G+ PL I+RL QKG+ L A+ LGG++++LG V
Sbjct: 283 HFRIDDDGS-PLFCVISRLTWQKGIDLXAEAVDEIVSLGGRLVVLGAGDVALEGALLAAA 341
Query: 457 ANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTG 516
+ H + + + Y+E LSH+ A D +++PS +EPCGL Q+ +RYG +PVV +TG
Sbjct: 342 SRHHGR---VGVAIGYNEPLSHLXQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTG 398
Query: 517 GLADTVFDVDDPSNHEK-ANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIMEN 575
GLADTV D + + K A G F + L A+ R R++ D P+ W + + ++
Sbjct: 399 GLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHD-PKLWTQXQKLGXKS 457
Query: 576 DNSWNNAAGKYMEIYNSI 593
D SW +AG Y +Y+ +
Sbjct: 458 DVSWEKSAGLYAALYSQL 475
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 143/514 (27%), Positives = 233/514 (45%), Gaps = 61/514 (11%)
Query: 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQ-EISDLALIT 167
M+++ + AEMAP +K GGLGDV+ GL A + GH V ++ P Y+ + + S +A I
Sbjct: 10 MNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIK 69
Query: 168 TYNSYHDGNWVATNAYHGVVSSIPVIFIEPSNQFFK-----GKNVYGGSY------NELE 216
+ Y + +H + +FI+ + K G+ +YG N++
Sbjct: 70 VADRYERVRF-----FHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMR 124
Query: 217 AYLFFSRACLEWMQVTGVQ----------PDIIHV-HEWQIGALPLLYWDMYQSLSL-KK 264
+ +A LE ++ + D++ V ++W G L + YQ + +
Sbjct: 125 -FSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRN 183
Query: 265 PRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYS 324
++ IHN+ + G E + L +S + ID +++ +K GI+ +
Sbjct: 184 AKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFD-FIDGYDTPVEGRKINWMKAGILEA 242
Query: 325 NAVVTVSPTYLKETLCSGWLASVL--ITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQ 382
+ V+TVSP Y +E + L I GI+NG+D W+P+ D ++ AK+ A
Sbjct: 243 DRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDAT 302
Query: 383 KP-EGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILL 441
E K + K +Q GL + +PL+ I RL QKG ++ AI + Q++LL
Sbjct: 303 TAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLL 362
Query: 442 GNSPVHWVQKDFEDL-ANLHNK-GTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLA 499
G +K FE L ++ K R ++ ++ L+H++ A AD++ VPS +EPCGL
Sbjct: 363 GTG-----KKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLI 417
Query: 500 QMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGF----------VFEGIDEGSLNW 549
Q+ GMRYG TGGL DTV E GF V E D +
Sbjct: 418 QLQGMRYGTPCACASTGGLVDTVI--------EGKTGFHMGRLSVDCKVVEPSDVKKVAA 469
Query: 550 ALDRAFRHFIDKPEEWNRIVQKIMENDNSWNNAA 583
L RA + + P + +V+ M D SW A
Sbjct: 470 TLKRAIK-VVGTP-AYEEMVRNCMNQDLSWKGPA 501
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 122/510 (23%), Positives = 201/510 (39%), Gaps = 111/510 (21%)
Query: 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLAL--- 165
M ++ + E P+ KVGGL + +T ++ A S GH V + P + Q +EI + +
Sbjct: 4 MKVLLLGFEFLPV-KVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGE 62
Query: 166 -ITTYNSYHD-GNWVATNAYHGVVSSIPVIFIEPSNQFFKGKNVYGGSYNEL-EAYLFFS 222
+ SY + GN G++ S ++VYG ++ L + F
Sbjct: 63 EVQVKVSYEERGNLRIYRIGGGLLDS---------------EDVYGPGWDGLIRKAVTFG 107
Query: 223 RACLEWMQVTGVQ---PDIIHVHEWQI---GALPLLYWDMYQSLSLKKPRIVLTIHNMEH 276
RA + + + PD++H H+W GAL Y+ K V TIH +
Sbjct: 108 RASVLLLNDLLREEPLPDVVHFHDWHTVFAGALIKKYF---------KIPAVFTIHRLNK 158
Query: 277 YGECRQEQLSKCGL-DGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYL 335
+ + GL + + Y + +PE GG + ++ V TVS YL
Sbjct: 159 -SKLPAFYFHEAGLSELAPYPDI-----------DPEH----TGGYI-ADIVTTVSRGYL 201
Query: 336 KETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKK--ICKYY 393
+ W K + NGID WN +++L + E KK + K+
Sbjct: 202 IDE----W--GFFRNFEGKITYVFNGIDCSFWN---ESYLTG----SRDERKKSLLSKFG 248
Query: 394 IQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAI------KRAEELGGQMILLGNSPVH 447
+ +G+ T + R QKG+ ++ AI K +E+ +I G+ +
Sbjct: 249 MDEGV------TFMFIGRFDR--GQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELE 300
Query: 448 WVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYG 507
+ E+ G I M S E LY + D V++PS +EP GL + M G
Sbjct: 301 GWARSLEE-----KHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLG 355
Query: 508 AVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNR 567
A+P+ GGL D + + G + + D G L A+ +A E
Sbjct: 356 AIPIASAVGGLRDIITN---------ETGILVKAGDPGELANAILKAL-------ELSRS 399
Query: 568 IVQKIMEN------DNSWNNAAGKYMEIYN 591
+ K EN SW +A +Y++ Y
Sbjct: 400 DLSKFRENCKKRAMSFSWEKSAERYVKAYT 429
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 122/510 (23%), Positives = 201/510 (39%), Gaps = 111/510 (21%)
Query: 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLAL--- 165
M ++ + E P+ KVGGL + +T ++ A S GH V + P + Q +EI + +
Sbjct: 3 MKVLLLGFEFLPV-KVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGE 61
Query: 166 -ITTYNSYHD-GNWVATNAYHGVVSSIPVIFIEPSNQFFKGKNVYGGSYNEL-EAYLFFS 222
+ SY + GN G++ S ++VYG ++ L + F
Sbjct: 62 EVQVKVSYEERGNLRIYRIGGGLLDS---------------EDVYGPGWDGLIRKAVTFG 106
Query: 223 RACLEWMQVTGVQ---PDIIHVHEWQI---GALPLLYWDMYQSLSLKKPRIVLTIHNMEH 276
RA + + + PD++H H+W GAL Y+ K V TIH +
Sbjct: 107 RASVLLLNDLLREEPLPDVVHFHDWHTVFAGALIKKYF---------KIPAVFTIHRLNK 157
Query: 277 YGECRQEQLSKCGL-DGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYL 335
+ + GL + + Y + +PE GG + ++ V TVS YL
Sbjct: 158 -SKLPAFYFHEAGLSELAPYPDI-----------DPEH----TGGYI-ADIVTTVSRGYL 200
Query: 336 KETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKK--ICKYY 393
+ W K + NGID WN +++L + E KK + K+
Sbjct: 201 IDE----W--GFFRNFEGKITYVFNGIDCSFWN---ESYLTG----SRDERKKSLLSKFG 247
Query: 394 IQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAI------KRAEELGGQMILLGNSPVH 447
+ +G+ T + R QKG+ ++ AI K +E+ +I G+ +
Sbjct: 248 MDEGV------TFMFIGRFDR--GQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELE 299
Query: 448 WVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYG 507
+ E+ G I M S E LY + D V++PS +EP GL + M G
Sbjct: 300 GWARSLEE-----KHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLG 354
Query: 508 AVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNR 567
A+P+ GGL D + + G + + D G L A+ +A E
Sbjct: 355 AIPIASAVGGLRDIITN---------ETGILVKAGDPGELANAILKAL-------ELSRS 398
Query: 568 IVQKIMEN------DNSWNNAAGKYMEIYN 591
+ K EN SW +A +Y++ Y
Sbjct: 399 DLSKFRENCKKRAMSFSWEKSAERYVKAYT 428
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 122/508 (24%), Positives = 199/508 (39%), Gaps = 109/508 (21%)
Query: 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLAL--- 165
M ++ + E P+ KVGGL + +T ++ A S GH V + P + Q +EI + +
Sbjct: 3 MKVLLLGFEFLPV-KVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGE 61
Query: 166 -ITTYNSYHD-GNWVATNAYHGVVSSIPVIFIEPSNQFFKGKNVYGGSYNEL-EAYLFFS 222
+ SY + GN G++ S ++VYG ++ L + F
Sbjct: 62 EVQVKVSYEERGNLRIYRIGGGLLDS---------------EDVYGPGWDGLIRKAVTFG 106
Query: 223 RACLEWMQVTGVQ---PDIIHVHEWQI---GALPLLYWDMYQSLSLKKPRIVLTIHNMEH 276
RA + + + PD++H H+W GAL Y+ K V TIH
Sbjct: 107 RASVLLLNDLLREEPLPDVVHFHDWHTVFAGALIKKYF---------KIPAVFTIH---- 153
Query: 277 YGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLK 336
+L+K L + + +PE GG + ++ V TVS YL
Sbjct: 154 -------RLNKSKLPAFYFHEAGLSELAPYPDIDPEH----TGGYI-ADIVTTVSRGYLI 201
Query: 337 ETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKK--ICKYYI 394
+ W K + NGID WN +++L + E KK + K+ +
Sbjct: 202 DE----W--GFFRNFEGKITYVFNGIDCSFWN---ESYLTG----SRDERKKSLLSKFGM 248
Query: 395 QKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAI------KRAEELGGQMILLGNSPVHW 448
+G+ T + R QKG+ ++ AI K +E+ +I G+ +
Sbjct: 249 DEGV------TFMFIGRFDR--GQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEG 300
Query: 449 VQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGA 508
+ E+ G I M S E LY + D V++PS +EP GL + M GA
Sbjct: 301 WARSLEE-----KHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGA 355
Query: 509 VPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRI 568
+P+ GGL D + + G + + D G L A+ +A E
Sbjct: 356 IPIASAVGGLRDIITN---------ETGILVKAGDPGELANAILKAL-------ELSRSD 399
Query: 569 VQKIMEN------DNSWNNAAGKYMEIY 590
+ K EN SW +A +Y++ Y
Sbjct: 400 LSKFRENCKKRAMSFSWEKSAERYVKAY 427
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 28/171 (16%)
Query: 360 NGIDTVIWNPATDAFLPAKFHAQKPEGKK--ICKYYIQKGLGLKSEGTVPLVVCITRLVA 417
NGID WN + + E KK + K+ + +G+ T + R
Sbjct: 4 NGIDCSFWNESY-------LTGSRDERKKSLLSKFGMDEGV------TFMFIGRFDR--G 48
Query: 418 QKGLHLITHAI------KRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLM 471
QKG+ ++ AI K +E+ +I G+ + + E+ G I M
Sbjct: 49 QKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEE-----KHGNVKVITEM 103
Query: 472 YSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTV 522
S E LY + D V++PS +EP GL + M GA+P+ GGL D +
Sbjct: 104 LSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII 154
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 72/181 (39%), Gaps = 31/181 (17%)
Query: 378 KFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKR--AEELG 435
+F PE K + K LG T P++ C +RLV +KG + A+ + A
Sbjct: 176 RFTPATPEDKSATR----KKLGFTD--TTPVIACNSRLVPRKGQDSLIKAMPQVIAARPD 229
Query: 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHML--YAAADIVLVPSIY 493
Q++++G+ +E S + + E M+ AAADI +P+
Sbjct: 230 AQLLIVGSG-------RYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPART 282
Query: 494 EPCGL-AQMIGMRY-----GAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSL 547
GL + +G+ Y VPV+ T G A P A G V EG D L
Sbjct: 283 RGGGLDVEGLGIVYLEAQACGVPVIAGTSGGA--------PETVTPATGLVVEGSDVDKL 334
Query: 548 N 548
+
Sbjct: 335 S 335
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 72/181 (39%), Gaps = 31/181 (17%)
Query: 378 KFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKR--AEELG 435
+F PE K + K LG T P++ C +RLV +KG + A+ + A
Sbjct: 176 RFTPATPEDKSATR----KKLGFTD--TTPVIACNSRLVPRKGQDSLIKAMPQVIAARPD 229
Query: 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHML--YAAADIVLVPSIY 493
Q++++G+ +E S + + E M+ AAADI +P+
Sbjct: 230 AQLLIVGSG-------RYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPART 282
Query: 494 EPCGL-AQMIGMRY-----GAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSL 547
GL + +G+ Y VPV+ T G A P A G V EG D L
Sbjct: 283 RGGGLDVEGLGIVYLEAQACGVPVIAGTSGGA--------PETVTPATGLVVEGSDVDKL 334
Query: 548 N 548
+
Sbjct: 335 S 335
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 70/319 (21%), Positives = 125/319 (39%), Gaps = 53/319 (16%)
Query: 300 KAIDDRTIGHN---PERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYF 356
K +D+R H ERL++ + +V+ S + + +V + DK+
Sbjct: 169 KEMDERFKFHRRIIAERLTMSYADKI----IVSTSQERFGQYSHDLYRGAVNVEDDDKFS 224
Query: 357 GILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLV 416
I G++T ++ D K A KI KY +++ LG +P ++ +RL
Sbjct: 225 VIPPGVNTRVF----DGEYGDKIKA------KITKY-LERDLG-SERMELPAIIASSRLD 272
Query: 417 AQKGLHLITHAIKRAEELGGQMILL----------------GNSPVHWVQKDFEDLANLH 460
+K + + A + +EL + L+ G + K E + N
Sbjct: 273 QKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNND 332
Query: 461 NKGTSTRILLMYSEELS---HMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG 517
+G + L +EL+ L + + + S YEP GLA + M G VV + GG
Sbjct: 333 CRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGG 392
Query: 518 LADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQK---IME 574
A+ + D + G + + D + L +AF + E W+ +K +E
Sbjct: 393 PAEIL----DGGKY----GVLVDPEDPEDIARGLLKAF----ESEETWSAYQEKGKQRVE 440
Query: 575 NDNSWNNAAGKYMEIYNSI 593
+W A Y+E+ I
Sbjct: 441 ERYTWQETARGYLEVIQEI 459
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 51/133 (38%), Gaps = 16/133 (12%)
Query: 463 GTSTRILLMYSEELSHML--YAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLAD 520
G RI + S ++ Y AADIV VPS E GL M G + + GGL
Sbjct: 303 GVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPI 362
Query: 521 TVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIMENDN--S 578
V E G + +G WA A +D E R+ + +E+ S
Sbjct: 363 AVA--------EGETGLLVDG--HSPHAWA--DALATLLDDDETRIRMGEDAVEHARTFS 410
Query: 579 WNNAAGKYMEIYN 591
W A + +YN
Sbjct: 411 WAATAAQLSSLYN 423
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 51/133 (38%), Gaps = 16/133 (12%)
Query: 463 GTSTRILLMYSEELSHML--YAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLAD 520
G RI + S ++ Y AADIV VPS E GL M G + + GGL
Sbjct: 283 GVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPI 342
Query: 521 TVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIMENDN--S 578
V E G + +G WA A +D E R+ + +E+ S
Sbjct: 343 AVA--------EGETGLLVDG--HSPHAWA--DALATLLDDDETRIRMGEDAVEHARTFS 390
Query: 579 WNNAAGKYMEIYN 591
W A + +YN
Sbjct: 391 WAATAAQLSSLYN 403
>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
Length = 416
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 59/126 (46%), Gaps = 9/126 (7%)
Query: 407 PLVVCITRLVAQKGLHLITHAIKRAEEL--GGQMILLG----NSPVHWV--QKDFEDLAN 458
P++ ++R KG+ + ++ +E G Q++L+G + P W+ +K +
Sbjct: 232 PIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGE 291
Query: 459 LHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGL 518
++ T ++ +++ E++ A+D++L SI E GL M G + R GG+
Sbjct: 292 DYDVKVLTNLIGVHAREVN-AFQRASDVILQMSIREGFGLTVTEAMWKGKPVIGRAVGGI 350
Query: 519 ADTVFD 524
+ D
Sbjct: 351 KFQIVD 356
>pdb|2VDW|A Chain A, Guanosine N7 Methyl-Transferase Sub-Complex (D1-D12) Of
The Vaccinia Virus Mrna Capping Enzyme
pdb|2VDW|C Chain C, Guanosine N7 Methyl-Transferase Sub-Complex (D1-D12) Of
The Vaccinia Virus Mrna Capping Enzyme
pdb|2VDW|E Chain E, Guanosine N7 Methyl-Transferase Sub-Complex (D1-D12) Of
The Vaccinia Virus Mrna Capping Enzyme
pdb|2VDW|G Chain G, Guanosine N7 Methyl-Transferase Sub-Complex (D1-D12) Of
The Vaccinia Virus Mrna Capping Enzyme
Length = 302
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 295 YASVEKAIDDRTIGHNPERLSL-LKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRD 353
Y SVEK DDR + +NP +S + I+ N +V V Y + + A+++ R
Sbjct: 196 YMSVEKIADDRIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDFATII--ERS 253
Query: 354 KYFGILNGIDTVIWNPATDAFLPAKFHAQKPEG---KKICKYYI 394
K F +NG T+ P+T F A K EG + + YY+
Sbjct: 254 KKF--INGASTMEDRPSTRNFFELNRGAIKCEGLDVEDLLSYYV 295
>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
Length = 416
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Query: 407 PLVVCITRLVAQKGLHLITHAIKRAEEL--GGQMILLG----NSPVHWV--QKDFEDLAN 458
P++ ++R KG+ + ++ +E G Q++L+G + P W+ +K +
Sbjct: 232 PIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVXAHDDPEGWIYFEKTLRKIGE 291
Query: 459 LHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGL 518
++ T ++ +++ E++ A+D++L SI E GL G + R GG+
Sbjct: 292 DYDVKVLTNLIGVHAREVN-AFQRASDVILQXSIREGFGLTVTEAXWKGKPVIGRAVGGI 350
Query: 519 ADTVFD 524
+ D
Sbjct: 351 KFQIVD 356
>pdb|3PH1|A Chain A, The Crystal Structure Of A Pathogenic Protein From The
Xanthomonas Campestris Reveals A New Tetrameric Pilz
Domain Self-Assembled Via A Unusual Helical Bundle
pdb|3PH1|B Chain B, The Crystal Structure Of A Pathogenic Protein From The
Xanthomonas Campestris Reveals A New Tetrameric Pilz
Domain Self-Assembled Via A Unusual Helical Bundle
pdb|3PH1|C Chain C, The Crystal Structure Of A Pathogenic Protein From The
Xanthomonas Campestris Reveals A New Tetrameric Pilz
Domain Self-Assembled Via A Unusual Helical Bundle
pdb|3PH1|D Chain D, The Crystal Structure Of A Pathogenic Protein From The
Xanthomonas Campestris Reveals A New Tetrameric Pilz
Domain Self-Assembled Via A Unusual Helical Bundle
pdb|3RQA|A Chain A, The Crystal Structure Of A Pathogenic Protein From The
Xanthomonas Campestris Reveals A New Tetrameric Pilz
Domain Self-Assembled Via A Unusual Helical Bundle
pdb|3RQA|B Chain B, The Crystal Structure Of A Pathogenic Protein From The
Xanthomonas Campestris Reveals A New Tetrameric Pilz
Domain Self-Assembled Via A Unusual Helical Bundle
pdb|3RQA|C Chain C, The Crystal Structure Of A Pathogenic Protein From The
Xanthomonas Campestris Reveals A New Tetrameric Pilz
Domain Self-Assembled Via A Unusual Helical Bundle
pdb|3RQA|D Chain D, The Crystal Structure Of A Pathogenic Protein From The
Xanthomonas Campestris Reveals A New Tetrameric Pilz
Domain Self-Assembled Via A Unusual Helical Bundle
Length = 191
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 17/124 (13%)
Query: 375 LPAKFHAQKPEGKKICKYYIQKGLG----LKSE------GTVPLVVCITRLVAQKGLHLI 424
LPA FH G + + LG L+SE G +PL+V R+ A+ L LI
Sbjct: 29 LPAGFHVTADPGSHATAETLLRSLGQVEDLRSEDSSEERGELPLLV--QRMDAK--LDLI 84
Query: 425 THAIKRAEELGGQMILLGNSPVHWVQKDFEDLA-NLHNKGTSTRILLMYSEELSHMLYAA 483
I R + LG VHW + + + H GT+ +LL S+ L +L
Sbjct: 85 LALIGRLVRQSDTRLALGT--VHWSVRGIRLASPHAHPPGTTGSVLLQPSDWLPELLQLP 142
Query: 484 ADIV 487
AD++
Sbjct: 143 ADVL 146
>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
Length = 416
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Query: 407 PLVVCITRLVAQKGLHLITHAIKRAEEL--GGQMILLG----NSPVHWV--QKDFEDLAN 458
P++ ++R KG+ + ++ +E G Q++L+G + P W+ +K +
Sbjct: 232 PIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGE 291
Query: 459 LHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGL 518
++ T ++ +++ E++ A+D++L SI GL M G + R GG+
Sbjct: 292 DYDVKVLTNLIGVHAREVN-AFQRASDVILQMSIRAGFGLTVTEAMWKGKPVIGRAVGGI 350
Query: 519 ADTVFD 524
+ D
Sbjct: 351 KFQIVD 356
>pdb|1FL1|A Chain A, Kshv Protease
pdb|1FL1|B Chain B, Kshv Protease
Length = 230
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 272 HNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVS 331
H ++H CR E LS + + KAID G +RL LLK +S
Sbjct: 171 HILQHVSSCRLEDLSTPNFVSPLETLMAKAID---AGFIRDRLDLLKTD---RGVASILS 224
Query: 332 PTYLK 336
P YLK
Sbjct: 225 PVYLK 229
>pdb|2PBK|A Chain A, Crystal Structure Of Kshv Protease In Complex With
Hexapeptide Phosphonate Inhibitor
pdb|2PBK|B Chain B, Crystal Structure Of Kshv Protease In Complex With
Hexapeptide Phosphonate Inhibitor
Length = 228
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 272 HNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVS 331
H ++H CR E LS + + KAID G +RL LLK +S
Sbjct: 169 HILQHVSSCRLEDLSTPNFVSPLETLMAKAID---AGFIRDRLDLLKTD---RGVASILS 222
Query: 332 PTYLK 336
P YLK
Sbjct: 223 PVYLK 227
>pdb|3NIP|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIP|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIP|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIP|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIP|E Chain E, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIP|F Chain F, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIQ|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase
pdb|3NIQ|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase
Length = 326
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 85 WKNKFPSRYASLEAPAEIEKDSNLMHIIHITAEMAP--IAKVGGLGD 129
W +R + P E+ S+LM +H + +AP + +VG LGD
Sbjct: 44 WDGGTTNRAGARHGPREVRNLSSLMRKVHHVSRIAPYDLVRVGDLGD 90
>pdb|3OY2|A Chain A, Crystal Structure Of A Putative Glycosyltransferase From
Paramecium Bursaria Chlorella Virus Ny2a
pdb|3OY2|B Chain B, Crystal Structure Of A Putative Glycosyltransferase From
Paramecium Bursaria Chlorella Virus Ny2a
pdb|3OY7|A Chain A, Crystal Structure Of A Virus Encoded Glycosyltransferase
In Complex With Gdp-Mannose
pdb|3OY7|B Chain B, Crystal Structure Of A Virus Encoded Glycosyltransferase
In Complex With Gdp-Mannose
Length = 413
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 11/141 (7%)
Query: 461 NKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLAD 520
NK R +L ++E M+Y A D+++ S E GL G G ++ GG AD
Sbjct: 253 NKIMINRTVL--TDERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLIISAVGG-AD 309
Query: 521 TVFDVDDPSNHEKANGFVFEGIDEGSLNWA------LDRAFRHFIDKP--EEWNRIVQKI 572
F D + + + D L AF F D+ +E+ + VQ
Sbjct: 310 DYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAFTFFKDEKNRKEYGKRVQDF 369
Query: 573 MENDNSWNNAAGKYMEIYNSI 593
++ +W++ + ++ +NS+
Sbjct: 370 VKTKPTWDDISSDIIDFFNSL 390
>pdb|4HDE|A Chain A, The Crystal Structure Of A Sco1SENC FAMILY LIPOPROTEIN
FROM BACILLUS Anthracis Str. Ames
Length = 170
Score = 29.3 bits (64), Expect = 6.2, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 551 LDRAFRHF-----IDKPEEWNRIVQKIMENDNSWNNAAGKYME 588
LD F F +DKPE +QK E+ ++WN G +E
Sbjct: 67 LDVQFVSFSVDPDLDKPENLKAFIQKFTEDTSNWNLLTGYSLE 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,124,315
Number of Sequences: 62578
Number of extensions: 848214
Number of successful extensions: 1798
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1741
Number of HSP's gapped (non-prelim): 32
length of query: 596
length of database: 14,973,337
effective HSP length: 104
effective length of query: 492
effective length of database: 8,465,225
effective search space: 4164890700
effective search space used: 4164890700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)