Query 043397
Match_columns 596
No_of_seqs 201 out of 2431
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 04:39:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043397.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043397hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02939 transferase, transfer 100.0 5.2E-70 1.1E-74 598.4 52.0 482 105-595 478-969 (977)
2 PRK14098 glycogen synthase; Pr 100.0 1.2E-64 2.5E-69 546.5 49.6 469 106-595 3-488 (489)
3 PRK14099 glycogen synthase; Pr 100.0 1.4E-62 2.9E-67 529.9 46.8 466 107-595 2-481 (485)
4 TIGR02095 glgA glycogen/starch 100.0 5.5E-62 1.2E-66 528.7 48.0 466 109-593 1-473 (473)
5 PLN02316 synthase/transferase 100.0 7.4E-62 1.6E-66 544.2 49.0 445 105-595 584-1036(1036)
6 PRK00654 glgA glycogen synthas 100.0 3.2E-60 6.8E-65 512.8 47.2 460 109-595 1-465 (466)
7 cd03791 GT1_Glycogen_synthase_ 100.0 1.1E-57 2.4E-62 496.4 48.2 469 110-592 1-476 (476)
8 COG0297 GlgA Glycogen synthase 100.0 5.5E-56 1.2E-60 466.0 43.9 472 109-595 1-480 (487)
9 TIGR03449 mycothiol_MshA UDP-N 100.0 2.4E-42 5.1E-47 368.3 38.6 388 111-594 1-403 (405)
10 TIGR02472 sucr_P_syn_N sucrose 100.0 3.4E-42 7.4E-47 369.9 39.9 392 123-591 24-439 (439)
11 PRK10307 putative glycosyl tra 100.0 4.8E-42 1E-46 366.7 38.1 393 109-595 1-410 (412)
12 TIGR02468 sucrsPsyn_pln sucros 100.0 2.2E-41 4.9E-46 378.4 41.1 444 105-594 166-672 (1050)
13 cd03796 GT1_PIG-A_like This fa 100.0 2.4E-41 5.3E-46 359.4 38.7 364 110-595 1-370 (398)
14 TIGR02470 sucr_synth sucrose s 100.0 7.3E-41 1.6E-45 367.9 40.7 437 107-590 254-745 (784)
15 PLN02871 UDP-sulfoquinovose:DA 100.0 9.8E-41 2.1E-45 361.4 38.5 377 106-594 56-436 (465)
16 TIGR02149 glgA_Coryne glycogen 100.0 3E-40 6.4E-45 349.9 38.4 376 109-594 1-388 (388)
17 cd04962 GT1_like_5 This family 100.0 1.3E-39 2.7E-44 342.6 39.5 367 109-593 1-371 (371)
18 TIGR02094 more_P_ylases alpha- 100.0 5.7E-39 1.2E-43 349.1 41.4 462 111-590 1-598 (601)
19 PRK15427 colanic acid biosynth 100.0 5.2E-39 1.1E-43 341.0 36.8 280 233-593 116-406 (406)
20 PLN00142 sucrose synthase 100.0 1.2E-39 2.6E-44 358.2 32.8 433 108-590 279-768 (815)
21 TIGR03088 stp2 sugar transfera 100.0 7.6E-39 1.6E-43 337.6 36.2 362 109-594 2-374 (374)
22 PRK15484 lipopolysaccharide 1, 100.0 3.1E-38 6.8E-43 332.8 36.7 359 110-594 4-379 (380)
23 cd03818 GT1_ExpC_like This fam 100.0 1.7E-37 3.6E-42 329.8 38.4 376 110-588 1-396 (396)
24 cd03805 GT1_ALG2_like This fam 100.0 1.4E-37 3E-42 329.9 34.4 368 109-586 1-392 (392)
25 cd03800 GT1_Sucrose_synthase T 100.0 3.1E-37 6.7E-42 327.4 37.0 371 123-587 19-397 (398)
26 PRK10125 putative glycosyl tra 100.0 5.1E-37 1.1E-41 324.7 35.4 375 109-593 1-405 (405)
27 cd03802 GT1_AviGT4_like This f 100.0 1.9E-36 4.1E-41 313.7 36.3 331 109-591 1-335 (335)
28 cd03792 GT1_Trehalose_phosphor 100.0 1.1E-36 2.4E-41 320.8 34.5 357 110-593 1-372 (372)
29 cd04955 GT1_like_6 This family 100.0 4.3E-36 9.4E-41 314.3 37.2 358 110-591 1-363 (363)
30 cd04951 GT1_WbdM_like This fam 100.0 5E-36 1.1E-40 313.3 37.0 356 110-592 1-360 (360)
31 PRK15179 Vi polysaccharide bio 100.0 8.9E-36 1.9E-40 328.6 37.7 378 110-592 283-693 (694)
32 PRK09922 UDP-D-galactose:(gluc 100.0 2.9E-36 6.3E-41 316.0 31.7 347 109-594 1-357 (359)
33 cd05844 GT1_like_7 Glycosyltra 100.0 9.2E-36 2E-40 312.8 33.3 356 110-589 1-367 (367)
34 cd03819 GT1_WavL_like This fam 100.0 2.5E-35 5.3E-40 307.8 35.1 341 123-582 8-355 (355)
35 cd03807 GT1_WbnK_like This fam 100.0 5.7E-35 1.2E-39 303.8 37.3 359 110-591 1-365 (365)
36 cd03795 GT1_like_4 This family 100.0 4.2E-35 9.1E-40 306.0 35.7 352 110-583 1-357 (357)
37 PRK15490 Vi polysaccharide bio 100.0 4E-35 8.6E-40 309.1 33.6 231 322-592 338-575 (578)
38 cd03821 GT1_Bme6_like This fam 100.0 5.8E-35 1.3E-39 304.9 34.8 369 110-588 1-375 (375)
39 PLN02846 digalactosyldiacylgly 100.0 2E-35 4.2E-40 311.0 30.7 383 106-591 2-390 (462)
40 cd03823 GT1_ExpE7_like This fa 100.0 1.5E-34 3.3E-39 300.7 36.6 356 110-592 1-359 (359)
41 cd03822 GT1_ecORF704_like This 100.0 1.6E-34 3.6E-39 301.8 36.7 354 110-591 1-366 (366)
42 cd03813 GT1_like_3 This family 100.0 2.8E-35 6.2E-40 319.1 31.9 297 233-591 171-475 (475)
43 cd03817 GT1_UGDG_like This fam 100.0 1.3E-34 2.8E-39 302.4 35.9 368 110-593 1-374 (374)
44 cd03812 GT1_CapH_like This fam 100.0 5.7E-35 1.2E-39 305.4 33.0 341 110-574 1-344 (358)
45 cd03825 GT1_wcfI_like This fam 100.0 7.8E-35 1.7E-39 304.9 34.1 349 109-593 1-365 (365)
46 cd03799 GT1_amsK_like This is 100.0 2E-34 4.2E-39 300.7 36.4 343 110-585 1-354 (355)
47 cd03814 GT1_like_2 This family 100.0 1.5E-34 3.2E-39 301.7 34.1 361 110-591 1-364 (364)
48 cd03794 GT1_wbuB_like This fam 100.0 2.4E-34 5.2E-39 301.8 35.9 384 110-587 1-394 (394)
49 cd03816 GT1_ALG1_like This fam 100.0 2.9E-34 6.3E-39 306.0 35.3 369 109-586 4-410 (415)
50 KOG1111 N-acetylglucosaminyltr 100.0 2.9E-35 6.2E-40 285.3 24.4 366 109-594 1-368 (426)
51 cd03801 GT1_YqgM_like This fam 100.0 1.7E-33 3.7E-38 292.2 37.3 369 110-591 1-374 (374)
52 cd03806 GT1_ALG11_like This fa 100.0 1.1E-33 2.3E-38 301.5 33.4 384 111-584 3-418 (419)
53 cd03809 GT1_mtfB_like This fam 100.0 7.1E-34 1.5E-38 296.9 30.2 361 110-588 1-365 (365)
54 cd03820 GT1_amsD_like This fam 100.0 5.5E-33 1.2E-37 286.6 34.0 341 110-587 1-347 (348)
55 PLN02949 transferase, transfer 100.0 1E-32 2.2E-37 294.8 36.8 235 316-595 213-459 (463)
56 cd03798 GT1_wlbH_like This fam 100.0 1E-32 2.2E-37 287.3 35.3 371 111-593 1-377 (377)
57 cd04299 GT1_Glycogen_Phosphory 100.0 1.9E-32 4.1E-37 302.5 38.7 467 110-592 87-690 (778)
58 cd03808 GT1_cap1E_like This fa 100.0 3.3E-32 7.1E-37 282.1 36.3 352 110-587 1-358 (359)
59 TIGR03087 stp1 sugar transfera 100.0 2.2E-32 4.7E-37 290.7 27.9 378 111-592 1-396 (397)
60 cd03811 GT1_WabH_like This fam 100.0 2.6E-31 5.7E-36 274.4 31.2 341 110-573 1-344 (353)
61 PLN02275 transferase, transfer 100.0 2.3E-30 5.1E-35 272.1 32.7 329 125-555 15-371 (371)
62 TIGR02918 accessory Sec system 100.0 1.6E-30 3.5E-35 280.5 30.8 279 233-593 209-500 (500)
63 PLN02501 digalactosyldiacylgly 100.0 1E-30 2.3E-35 277.9 28.5 373 109-590 323-707 (794)
64 cd03804 GT1_wbaZ_like This fam 100.0 1.6E-30 3.5E-35 271.7 28.8 204 316-586 146-350 (351)
65 cd04946 GT1_AmsK_like This fam 100.0 4.4E-30 9.5E-35 273.2 31.8 220 317-587 177-406 (407)
66 cd03793 GT1_Glycogen_synthase_ 100.0 5.8E-30 1.3E-34 270.1 30.8 438 114-595 7-589 (590)
67 PHA01630 putative group 1 glyc 100.0 2E-29 4.3E-34 259.0 28.0 215 321-592 92-330 (331)
68 PHA01633 putative glycosyl tra 100.0 1.6E-28 3.5E-33 249.3 32.7 227 321-588 90-335 (335)
69 cd04949 GT1_gtfA_like This fam 100.0 1.9E-28 4.2E-33 258.0 26.8 213 321-586 155-372 (372)
70 TIGR02400 trehalose_OtsA alpha 100.0 1.9E-27 4.1E-32 253.6 30.7 314 213-590 105-454 (456)
71 cd03788 GT1_TPS Trehalose-6-Ph 100.0 7.3E-28 1.6E-32 258.9 27.7 312 213-588 109-457 (460)
72 PRK00726 murG undecaprenyldiph 100.0 1.9E-26 4.1E-31 241.6 33.4 342 108-591 1-356 (357)
73 PF08323 Glyco_transf_5: Starc 100.0 1.7E-27 3.8E-32 234.3 17.8 221 110-340 1-232 (245)
74 cd03785 GT1_MurG MurG is an N- 99.9 1.2E-24 2.5E-29 227.3 33.1 331 110-583 1-348 (350)
75 PLN03063 alpha,alpha-trehalose 99.9 4.4E-25 9.6E-30 249.3 30.4 318 214-594 126-479 (797)
76 TIGR01133 murG undecaprenyldip 99.9 2.3E-24 4.9E-29 225.0 30.6 330 109-583 1-345 (348)
77 PRK13609 diacylglycerol glucos 99.9 8.5E-24 1.9E-28 223.4 33.0 358 107-593 3-372 (380)
78 PRK14501 putative bifunctional 99.9 3.3E-24 7.1E-29 242.9 26.7 316 213-593 111-463 (726)
79 PRK05749 3-deoxy-D-manno-octul 99.9 3.1E-23 6.8E-28 222.4 28.5 232 317-594 172-421 (425)
80 cd04950 GT1_like_1 Glycosyltra 99.9 1.1E-22 2.3E-27 214.3 31.0 221 316-592 146-371 (373)
81 PF00534 Glycos_transf_1: Glyc 99.9 6.3E-24 1.4E-28 198.4 18.9 167 391-574 2-171 (172)
82 PLN02605 monogalactosyldiacylg 99.9 1.9E-22 4.2E-27 212.9 32.2 214 322-590 149-379 (382)
83 TIGR02398 gluc_glyc_Psyn gluco 99.9 1E-21 2.2E-26 208.3 30.4 315 213-591 110-481 (487)
84 PRK13608 diacylglycerol glucos 99.9 8.4E-22 1.8E-26 208.5 28.8 218 322-593 146-372 (391)
85 KOG0853 Glycosyltransferase [C 99.9 1.5E-21 3.3E-26 202.6 26.8 397 108-593 34-468 (495)
86 cd01635 Glycosyltransferase_GT 99.9 2.1E-21 4.6E-26 188.5 23.8 118 411-539 109-229 (229)
87 TIGR00236 wecB UDP-N-acetylglu 99.8 4.8E-19 1E-23 186.2 28.9 216 323-588 141-363 (365)
88 PRK09814 beta-1,6-galactofuran 99.8 3.8E-19 8.3E-24 184.1 27.7 235 234-574 62-311 (333)
89 PLN03064 alpha,alpha-trehalose 99.8 7.6E-19 1.7E-23 197.6 29.0 317 214-593 210-562 (934)
90 cd03786 GT1_UDP-GlcNAc_2-Epime 99.8 6.4E-19 1.4E-23 185.0 25.7 215 322-589 140-361 (363)
91 KOG1387 Glycosyltransferase [C 99.8 2.6E-17 5.7E-22 159.5 31.0 298 233-596 148-462 (465)
92 KOG2941 Beta-1,4-mannosyltrans 99.8 3.4E-17 7.3E-22 158.9 30.5 385 127-588 25-437 (444)
93 PRK00025 lpxB lipid-A-disaccha 99.8 6.6E-18 1.4E-22 178.5 27.5 198 321-572 132-352 (380)
94 COG0438 RfaG Glycosyltransfera 99.8 9.6E-18 2.1E-22 172.2 27.7 222 323-595 150-379 (381)
95 PF05693 Glycogen_syn: Glycoge 99.8 2.1E-17 4.6E-22 173.9 25.2 445 114-594 2-583 (633)
96 PRK10117 trehalose-6-phosphate 99.7 1E-13 2.2E-18 146.0 29.4 316 213-593 101-454 (474)
97 PF00982 Glyco_transf_20: Glyc 99.7 5.3E-14 1.2E-18 150.0 27.2 317 213-591 119-473 (474)
98 PF13692 Glyco_trans_1_4: Glyc 99.6 5.7E-16 1.2E-20 138.4 10.1 129 406-556 2-134 (135)
99 TIGR00215 lpxB lipid-A-disacch 99.6 2.7E-13 5.8E-18 143.0 29.7 207 321-572 136-362 (385)
100 TIGR03713 acc_sec_asp1 accesso 99.6 2.2E-14 4.8E-19 155.2 21.0 167 405-590 318-519 (519)
101 COG0380 OtsA Trehalose-6-phosp 99.6 6.4E-13 1.4E-17 139.2 29.4 316 213-591 125-478 (486)
102 PLN02205 alpha,alpha-trehalose 99.5 3.3E-12 7.2E-17 145.1 30.1 317 214-592 179-551 (854)
103 PF13439 Glyco_transf_4: Glyco 99.4 1.1E-12 2.5E-17 121.9 11.8 176 111-367 1-176 (177)
104 COG0707 MurG UDP-N-acetylgluco 99.4 4.9E-10 1.1E-14 115.6 31.3 315 123-574 9-337 (357)
105 PF13579 Glyco_trans_4_4: Glyc 99.4 1.8E-12 4E-17 118.4 10.9 160 125-361 1-160 (160)
106 PRK12446 undecaprenyldiphospho 99.3 2.5E-09 5.4E-14 111.4 30.6 323 125-590 12-349 (352)
107 COG0058 GlgP Glucan phosphoryl 99.3 1.3E-10 2.9E-15 126.6 21.4 411 124-541 114-630 (750)
108 PRK14986 glycogen phosphorylas 99.3 1.3E-09 2.8E-14 120.5 25.6 298 235-539 313-693 (815)
109 cd04300 GT1_Glycogen_Phosphory 99.3 2.6E-09 5.6E-14 118.4 27.6 287 235-524 300-671 (797)
110 TIGR02093 P_ylase glycogen/sta 99.3 7.3E-10 1.6E-14 122.1 23.0 289 235-524 297-668 (794)
111 TIGR02919 accessory Sec system 99.2 9.5E-10 2.1E-14 116.6 18.8 178 322-568 238-418 (438)
112 PF13524 Glyco_trans_1_2: Glyc 99.2 1.1E-10 2.5E-15 96.7 8.7 89 486-588 1-92 (92)
113 PRK14985 maltodextrin phosphor 99.2 2.7E-09 5.9E-14 117.5 21.0 287 235-524 302-670 (798)
114 TIGR03492 conserved hypothetic 99.1 3.9E-07 8.5E-12 96.4 31.7 210 321-586 158-392 (396)
115 PF09314 DUF1972: Domain of un 99.1 1.1E-08 2.3E-13 94.8 17.2 180 109-363 2-185 (185)
116 PF00343 Phosphorylase: Carboh 99.0 2.9E-08 6.3E-13 108.5 21.2 298 235-540 214-595 (713)
117 TIGR03568 NeuC_NnaA UDP-N-acet 99.0 5.8E-07 1.2E-11 94.2 30.1 212 324-589 145-364 (365)
118 COG1519 KdtA 3-deoxy-D-manno-o 98.9 1.5E-06 3.2E-11 89.1 28.7 230 315-591 169-416 (419)
119 TIGR03590 PseG pseudaminic aci 98.9 6.8E-07 1.5E-11 90.0 25.2 97 406-515 171-268 (279)
120 cd03784 GT1_Gtf_like This fami 98.8 1.1E-06 2.3E-11 93.6 25.1 124 404-556 238-371 (401)
121 PF04007 DUF354: Protein of un 98.8 2.2E-06 4.7E-11 87.7 24.3 296 109-556 1-309 (335)
122 PF13528 Glyco_trans_1_3: Glyc 98.8 7.8E-07 1.7E-11 91.6 20.3 124 404-554 191-317 (318)
123 TIGR01426 MGT glycosyltransfer 98.7 1.3E-05 2.7E-10 85.2 29.4 156 405-589 225-389 (392)
124 KOG3742 Glycogen synthase [Car 98.7 5E-08 1.1E-12 98.4 7.8 315 237-590 176-610 (692)
125 PF13477 Glyco_trans_4_2: Glyc 98.6 1E-06 2.2E-11 78.8 14.4 109 110-275 1-110 (139)
126 PF02350 Epimerase_2: UDP-N-ac 98.6 3.9E-06 8.4E-11 87.1 20.0 211 324-590 123-345 (346)
127 PF13844 Glyco_transf_41: Glyc 98.6 3.1E-06 6.7E-11 89.4 18.5 185 394-593 275-467 (468)
128 COG1819 Glycosyl transferases, 98.6 1.6E-05 3.4E-10 84.3 23.6 156 405-591 237-400 (406)
129 COG0763 LpxB Lipid A disacchar 98.5 3.9E-05 8.4E-10 78.0 24.2 327 108-569 1-352 (381)
130 COG4641 Uncharacterized protei 98.5 2.3E-05 4.9E-10 79.2 20.6 210 324-593 139-362 (373)
131 PF02684 LpxB: Lipid-A-disacch 98.3 0.00016 3.4E-09 75.2 23.7 310 128-564 11-343 (373)
132 COG3914 Spy Predicted O-linked 98.3 0.00026 5.6E-09 75.0 24.9 181 395-595 421-616 (620)
133 COG0381 WecB UDP-N-acetylgluco 98.3 0.00029 6.3E-09 71.9 23.1 218 324-591 146-369 (383)
134 TIGR00661 MJ1255 conserved hyp 98.2 0.00017 3.7E-09 74.4 21.8 118 406-555 189-312 (321)
135 PRK01021 lpxB lipid-A-disaccha 98.2 0.00055 1.2E-08 74.4 24.7 326 109-571 227-581 (608)
136 PF11440 AGT: DNA alpha-glucos 98.0 0.0012 2.5E-08 63.7 20.7 159 394-556 170-352 (355)
137 COG1817 Uncharacterized protei 98.0 0.0035 7.5E-08 61.8 23.9 177 321-556 124-313 (346)
138 PF12000 Glyco_trans_4_3: Gkyc 98.0 8.2E-05 1.8E-09 68.2 11.5 149 188-367 19-170 (171)
139 PRK14089 ipid-A-disaccharide s 97.7 0.0037 8E-08 64.7 20.3 91 406-513 168-260 (347)
140 COG4671 Predicted glycosyl tra 97.7 0.025 5.4E-07 56.9 24.5 140 404-557 218-365 (400)
141 PRK02797 4-alpha-L-fucosyltran 97.7 0.01 2.2E-07 59.1 21.7 167 405-595 144-319 (322)
142 COG3980 spsG Spore coat polysa 97.6 0.0066 1.4E-07 59.1 17.9 136 405-569 158-301 (318)
143 PF00862 Sucrose_synth: Sucros 97.6 0.0014 3.1E-08 68.7 14.1 178 109-333 273-478 (550)
144 KOG1050 Trehalose-6-phosphate 97.5 0.013 2.8E-07 65.9 21.9 266 235-558 140-441 (732)
145 PF04464 Glyphos_transf: CDP-G 97.5 0.0039 8.5E-08 65.6 16.6 189 321-556 132-335 (369)
146 COG3660 Predicted nucleoside-d 97.3 0.094 2E-06 50.6 21.1 108 404-517 160-275 (329)
147 PF07429 Glyco_transf_56: 4-al 97.0 0.45 9.8E-06 48.3 27.3 117 406-523 184-306 (360)
148 PF11997 DUF3492: Domain of un 96.8 0.0086 1.9E-07 59.7 10.2 43 109-152 1-43 (268)
149 PF04101 Glyco_tran_28_C: Glyc 96.6 0.00019 4.2E-09 66.3 -2.7 96 464-571 55-154 (167)
150 PF06258 Mito_fiss_Elm1: Mitoc 96.6 0.29 6.2E-06 50.0 19.5 119 391-517 134-259 (311)
151 PHA03392 egt ecdysteroid UDP-g 96.5 0.061 1.3E-06 58.9 15.4 129 406-567 297-438 (507)
152 PRK10017 colanic acid biosynth 96.5 0.59 1.3E-05 49.9 22.3 136 422-573 260-404 (426)
153 PLN02448 UDP-glycosyltransfera 96.0 0.21 4.6E-06 54.1 15.8 130 405-556 274-414 (459)
154 PLN03004 UDP-glycosyltransfera 95.6 0.3 6.5E-06 52.5 15.2 134 404-556 269-423 (451)
155 PLN02863 UDP-glucoronosyl/UDP- 95.5 0.38 8.3E-06 52.2 15.6 133 405-556 283-432 (477)
156 PLN02670 transferase, transfer 95.2 0.72 1.6E-05 50.0 16.4 165 404-592 277-465 (472)
157 TIGR02195 heptsyl_trn_II lipop 95.1 0.41 8.8E-06 49.5 13.7 111 391-512 161-275 (334)
158 PF12038 DUF3524: Domain of un 95.0 0.12 2.5E-06 46.8 7.9 80 234-341 58-137 (168)
159 PLN03007 UDP-glucosyltransfera 94.9 0.86 1.9E-05 49.7 16.2 136 404-556 284-439 (482)
160 PLN02562 UDP-glycosyltransfera 94.9 0.38 8.3E-06 51.9 13.2 132 405-556 273-412 (448)
161 cd03789 GT1_LPS_heptosyltransf 94.9 0.23 5E-06 49.9 10.9 98 408-513 124-223 (279)
162 PLN02410 UDP-glucoronosyl/UDP- 94.7 0.84 1.8E-05 49.2 15.3 135 404-556 263-409 (451)
163 PLN02554 UDP-glycosyltransfera 94.6 0.84 1.8E-05 49.8 15.0 129 405-556 274-439 (481)
164 PLN02555 limonoid glucosyltran 94.5 1 2.2E-05 49.0 15.3 134 405-556 277-428 (480)
165 PLN02764 glycosyltransferase f 94.4 1.4 2.9E-05 47.5 15.7 134 404-556 256-406 (453)
166 PRK10422 lipopolysaccharide co 94.3 3.1 6.7E-05 43.3 18.1 103 405-513 183-287 (352)
167 PLN02207 UDP-glycosyltransfera 93.9 2.1 4.6E-05 46.3 16.2 132 405-556 275-425 (468)
168 PLN02167 UDP-glycosyltransfera 93.9 2 4.3E-05 46.8 16.0 129 405-556 280-433 (475)
169 PLN02208 glycosyltransferase f 93.4 4.8 0.0001 43.4 17.8 136 404-556 250-400 (442)
170 PLN02210 UDP-glucosyl transfer 93.4 2.3 5E-05 46.0 15.4 135 405-556 269-414 (456)
171 PF10087 DUF2325: Uncharacteri 93.3 0.19 4.1E-06 41.7 5.4 81 438-522 2-90 (97)
172 PRK10916 ADP-heptose:LPS hepto 92.8 2.2 4.8E-05 44.3 13.9 109 394-512 170-285 (348)
173 TIGR02193 heptsyl_trn_I lipopo 92.8 2.9 6.3E-05 42.8 14.6 99 405-513 179-279 (319)
174 PLN00164 glucosyltransferase; 92.7 2.8 6.1E-05 45.7 15.0 80 465-556 340-430 (480)
175 PLN02173 UDP-glucosyl transfer 92.2 3.6 7.8E-05 44.4 14.8 134 404-556 263-407 (449)
176 PLN02992 coniferyl-alcohol glu 92.0 3.7 8E-05 44.6 14.7 80 464-556 338-426 (481)
177 PF00201 UDPGT: UDP-glucoronos 92.0 1.1 2.3E-05 49.2 10.9 129 404-565 275-413 (500)
178 PF01075 Glyco_transf_9: Glyco 92.0 1.2 2.6E-05 43.7 10.2 101 404-513 104-208 (247)
179 PRK10964 ADP-heptose:LPS hepto 91.9 3.4 7.4E-05 42.4 13.9 96 407-513 180-278 (322)
180 PLN00414 glycosyltransferase f 91.8 3.5 7.6E-05 44.4 14.2 134 404-556 251-401 (446)
181 TIGR02201 heptsyl_trn_III lipo 91.8 2.6 5.7E-05 43.6 13.0 100 406-513 182-285 (344)
182 TIGR03609 S_layer_CsaB polysac 91.5 17 0.00037 36.7 25.1 87 420-514 189-276 (298)
183 PF05159 Capsule_synth: Capsul 90.0 3.5 7.6E-05 41.1 11.5 99 404-514 115-225 (269)
184 PLN02534 UDP-glycosyltransfera 89.9 11 0.00023 41.3 15.7 135 405-556 283-443 (491)
185 PLN02152 indole-3-acetate beta 89.6 11 0.00023 40.9 15.3 135 405-556 261-416 (455)
186 COG0859 RfaF ADP-heptose:LPS h 88.8 4.7 0.0001 41.7 11.7 98 406-513 176-276 (334)
187 PF04413 Glycos_transf_N: 3-De 87.8 6.2 0.00013 37.0 10.7 38 316-360 142-179 (186)
188 PLN03015 UDP-glucosyl transfer 86.9 21 0.00046 38.7 15.5 80 465-556 336-425 (470)
189 KOG4626 O-linked N-acetylgluco 86.5 21 0.00046 39.2 14.7 185 394-593 749-941 (966)
190 PF08288 PIGA: PIGA (GPI ancho 85.7 5.2 0.00011 32.1 7.4 39 233-275 48-86 (90)
191 PF06925 MGDG_synth: Monogalac 83.6 11 0.00024 34.6 10.1 28 324-358 138-165 (169)
192 PF15024 Glyco_transf_18: Glyc 82.8 13 0.00029 40.5 11.4 156 411-592 282-455 (559)
193 PF03016 Exostosin: Exostosin 81.7 6 0.00013 39.9 8.3 72 473-552 226-300 (302)
194 PF01975 SurE: Survival protei 79.8 2.3 5.1E-05 40.2 4.2 40 109-155 1-40 (196)
195 PF08660 Alg14: Oligosaccharid 79.4 36 0.00078 31.3 11.8 37 234-270 91-127 (170)
196 PF02951 GSH-S_N: Prokaryotic 77.6 4.3 9.4E-05 34.9 4.7 41 109-152 1-41 (119)
197 PHA03392 egt ecdysteroid UDP-g 74.9 3.8 8.2E-05 45.0 4.7 39 109-152 21-59 (507)
198 PF01113 DapB_N: Dihydrodipico 73.5 4.7 0.0001 35.0 4.1 46 475-520 59-104 (124)
199 KOG0832 Mitochondrial/chloropl 72.7 74 0.0016 30.5 11.7 147 361-523 61-213 (251)
200 COG2327 WcaK Polysaccharide py 72.4 83 0.0018 33.0 13.3 96 449-556 251-349 (385)
201 PRK05647 purN phosphoribosylgl 71.2 20 0.00042 34.1 8.0 33 108-149 1-35 (200)
202 COG2910 Putative NADH-flavin r 71.1 5.5 0.00012 36.9 3.9 35 109-153 1-35 (211)
203 KOG3349 Predicted glycosyltran 71.0 33 0.00071 30.7 8.5 95 406-514 4-107 (170)
204 PRK09358 adenosine deaminase; 69.6 1.4E+02 0.003 30.7 15.4 147 421-596 181-340 (340)
205 COG4567 Response regulator con 67.7 61 0.0013 29.1 9.4 139 437-586 11-165 (182)
206 KOG1192 UDP-glucuronosyl and U 67.4 75 0.0016 34.5 12.9 95 406-512 278-379 (496)
207 PF03033 Glyco_transf_28: Glyc 65.2 9.9 0.00021 33.2 4.4 20 131-150 15-34 (139)
208 KOG2099 Glycogen phosphorylase 65.0 19 0.00041 39.1 6.8 212 313-525 440-705 (843)
209 PF12996 DUF3880: DUF based on 63.6 17 0.00038 28.6 5.0 42 321-371 16-57 (79)
210 cd01425 RPS2 Ribosomal protein 62.7 87 0.0019 29.5 10.5 90 429-522 50-166 (193)
211 PRK10840 transcriptional regul 62.7 1.4E+02 0.003 28.1 13.7 109 435-556 3-125 (216)
212 PLN02572 UDP-sulfoquinovose sy 62.2 12 0.00027 40.2 5.3 38 102-149 41-78 (442)
213 PF03401 TctC: Tripartite tric 61.3 1.8E+02 0.0039 29.0 14.3 158 405-574 77-245 (274)
214 TIGR01915 npdG NADPH-dependent 61.0 11 0.00024 36.2 4.2 32 109-150 1-32 (219)
215 TIGR00639 PurN phosphoribosylg 61.0 58 0.0013 30.6 8.9 34 109-151 1-36 (190)
216 PRK00207 sulfur transfer compl 60.2 17 0.00036 31.8 4.8 38 109-149 1-39 (128)
217 PF04230 PS_pyruv_trans: Polys 59.8 68 0.0015 31.1 9.9 45 466-515 240-284 (286)
218 PRK04531 acetylglutamate kinas 59.3 50 0.0011 35.0 9.0 67 404-477 35-103 (398)
219 TIGR00959 ffh signal recogniti 59.1 2.4E+02 0.0053 30.2 14.2 87 495-590 254-340 (428)
220 COG1887 TagB Putative glycosyl 59.0 2.4E+02 0.0053 29.8 17.3 141 394-556 198-352 (388)
221 PF03358 FMN_red: NADPH-depend 57.1 17 0.00037 32.4 4.5 39 109-150 1-39 (152)
222 PRK06719 precorrin-2 dehydroge 57.1 17 0.00037 33.0 4.5 32 109-151 14-45 (157)
223 PLN00016 RNA-binding protein; 56.1 12 0.00026 39.3 3.8 41 105-151 49-89 (378)
224 CHL00194 ycf39 Ycf39; Provisio 55.4 15 0.00033 37.4 4.4 33 109-151 1-33 (317)
225 PRK13398 3-deoxy-7-phosphohept 54.8 2E+02 0.0044 28.6 12.0 103 407-514 27-141 (266)
226 PRK10360 DNA-binding transcrip 54.4 1.7E+02 0.0037 26.6 11.6 76 473-556 35-117 (196)
227 PLN02166 dTDP-glucose 4,6-dehy 54.2 18 0.00039 39.0 4.8 36 105-150 117-152 (436)
228 PLN02778 3,5-epimerase/4-reduc 53.2 19 0.00042 36.4 4.7 33 106-148 7-39 (298)
229 PRK13932 stationary phase surv 53.2 22 0.00048 35.1 4.8 41 107-155 4-44 (257)
230 KOG1021 Acetylglucosaminyltran 52.3 1.2E+02 0.0027 32.9 10.9 86 474-572 334-422 (464)
231 PF00070 Pyr_redox: Pyridine n 52.2 33 0.00071 26.8 4.9 27 125-152 6-32 (80)
232 COG0745 OmpR Response regulato 52.2 2E+02 0.0043 27.8 11.3 78 475-557 34-118 (229)
233 PRK04155 chaperone protein Hch 52.1 42 0.00091 33.8 6.7 44 109-152 50-100 (287)
234 TIGR00715 precor6x_red precorr 51.0 22 0.00048 35.2 4.5 120 406-555 130-255 (256)
235 PLN02695 GDP-D-mannose-3',5'-e 50.1 22 0.00048 37.2 4.7 33 107-149 20-52 (370)
236 PRK06756 flavodoxin; Provision 50.0 30 0.00066 30.8 4.9 37 108-149 1-37 (148)
237 PRK09271 flavodoxin; Provision 49.5 31 0.00066 31.3 4.9 36 109-149 1-36 (160)
238 PRK06849 hypothetical protein; 48.6 25 0.00054 37.1 4.8 35 107-151 3-37 (389)
239 COG0569 TrkA K+ transport syst 48.4 22 0.00047 34.4 4.0 26 126-151 7-32 (225)
240 TIGR00696 wecB_tagA_cpsF bacte 48.4 80 0.0017 29.3 7.5 100 420-523 33-140 (177)
241 PF03446 NAD_binding_2: NAD bi 48.0 28 0.0006 31.7 4.4 31 108-149 1-31 (163)
242 KOG0780 Signal recognition par 47.4 3.7E+02 0.0079 28.4 14.0 172 407-591 155-341 (483)
243 PF00551 Formyl_trans_N: Formy 47.3 2.3E+02 0.0051 26.1 11.1 27 109-144 1-27 (181)
244 PF00201 UDPGT: UDP-glucoronos 46.9 11 0.00024 41.2 1.9 27 126-152 11-37 (500)
245 PRK10867 signal recognition pa 46.7 4E+02 0.0087 28.6 15.5 97 485-590 243-341 (433)
246 PLN00141 Tic62-NAD(P)-related 46.5 34 0.00073 33.4 5.1 34 107-150 16-49 (251)
247 PF11071 DUF2872: Protein of u 45.8 1E+02 0.0022 26.9 6.9 71 477-555 66-140 (141)
248 PLN02657 3,8-divinyl protochlo 45.7 41 0.00088 35.6 5.9 37 105-151 57-93 (390)
249 PF06506 PrpR_N: Propionate ca 45.2 70 0.0015 29.5 6.7 100 421-558 63-167 (176)
250 COG1927 Mtd Coenzyme F420-depe 45.0 2.8E+02 0.006 26.3 10.9 114 409-555 7-128 (277)
251 PRK13396 3-deoxy-7-phosphohept 44.9 2.9E+02 0.0064 28.7 11.6 105 405-514 99-215 (352)
252 COG0052 RpsB Ribosomal protein 44.9 2.1E+02 0.0045 28.0 9.8 38 484-523 157-196 (252)
253 PRK06249 2-dehydropantoate 2-r 44.9 31 0.00067 35.2 4.7 35 106-151 3-37 (313)
254 COG2204 AtoC Response regulato 44.9 2.2E+02 0.0047 30.9 10.9 110 437-557 6-122 (464)
255 PRK09739 hypothetical protein; 44.4 46 0.00099 31.4 5.5 39 108-149 3-41 (199)
256 COG0716 FldA Flavodoxins [Ener 44.0 37 0.0008 30.4 4.5 37 108-149 1-37 (151)
257 PF01884 PcrB: PcrB family; I 43.5 62 0.0013 31.4 6.1 77 410-493 9-85 (230)
258 PRK15424 propionate catabolism 43.1 2.1E+02 0.0046 31.7 11.0 101 423-557 95-195 (538)
259 PF13460 NAD_binding_10: NADH( 43.1 39 0.00085 30.9 4.7 31 124-154 4-34 (183)
260 PF03808 Glyco_tran_WecB: Glyc 43.0 1.3E+02 0.0028 27.7 8.0 100 417-523 30-141 (172)
261 PRK07742 phosphate butyryltran 43.0 3.7E+02 0.0081 27.2 12.7 76 406-492 15-99 (299)
262 PRK10675 UDP-galactose-4-epime 42.9 29 0.00062 35.6 4.1 31 109-149 1-31 (338)
263 COG0111 SerA Phosphoglycerate 42.8 1E+02 0.0022 31.8 7.9 77 437-518 144-237 (324)
264 TIGR01425 SRP54_euk signal rec 42.8 4.6E+02 0.0099 28.2 13.7 96 485-590 242-340 (429)
265 CHL00072 chlL photochlorophyll 42.7 32 0.0007 34.7 4.3 33 109-149 1-35 (290)
266 COG2102 Predicted ATPases of P 42.5 85 0.0018 30.1 6.7 87 407-497 61-149 (223)
267 COG4635 HemG Flavodoxin [Energ 42.3 38 0.00083 30.6 4.1 36 109-149 1-36 (175)
268 PRK14619 NAD(P)H-dependent gly 42.2 37 0.00081 34.5 4.8 33 107-150 3-35 (308)
269 PF01210 NAD_Gly3P_dh_N: NAD-d 41.8 36 0.00077 30.8 4.1 25 128-152 8-32 (157)
270 COG1703 ArgK Putative periplas 41.4 4E+02 0.0086 27.1 11.4 25 125-149 62-86 (323)
271 PF00205 TPP_enzyme_M: Thiamin 41.2 1.1E+02 0.0024 26.6 7.1 23 468-490 62-84 (137)
272 PRK00676 hemA glutamyl-tRNA re 41.2 4.3E+02 0.0092 27.4 14.6 136 435-593 174-319 (338)
273 PLN02206 UDP-glucuronate decar 41.0 38 0.00081 36.5 4.8 35 105-149 116-150 (442)
274 cd07944 DRE_TIM_HOA_like 4-hyd 40.8 3.8E+02 0.0081 26.6 14.5 104 417-521 104-222 (266)
275 PRK06718 precorrin-2 dehydroge 39.9 48 0.001 31.5 4.8 33 109-152 11-43 (202)
276 PRK04020 rps2P 30S ribosomal p 39.9 1.2E+02 0.0027 28.7 7.4 101 418-522 49-153 (204)
277 PF00072 Response_reg: Respons 39.8 2E+02 0.0044 23.2 9.6 78 467-552 25-112 (112)
278 PRK08305 spoVFB dipicolinate s 39.7 53 0.0011 31.0 4.9 34 109-150 6-41 (196)
279 PF02374 ArsA_ATPase: Anion-tr 39.4 40 0.00086 34.4 4.4 37 109-152 1-39 (305)
280 COG1087 GalE UDP-glucose 4-epi 39.4 39 0.00084 34.1 4.1 25 125-149 7-31 (329)
281 cd06533 Glyco_transf_WecG_TagA 39.3 2.5E+02 0.0054 25.7 9.3 98 417-522 28-138 (171)
282 PRK07454 short chain dehydroge 39.2 41 0.00088 32.4 4.4 34 108-150 5-38 (241)
283 TIGR01768 GGGP-family geranylg 39.1 40 0.00087 32.5 4.1 73 414-493 5-81 (223)
284 PF09949 DUF2183: Uncharacteri 39.1 1E+02 0.0022 25.6 6.0 29 434-463 63-91 (100)
285 PRK06703 flavodoxin; Provision 39.0 54 0.0012 29.2 4.8 37 108-149 1-37 (151)
286 PF02441 Flavoprotein: Flavopr 38.8 46 0.00099 28.9 4.2 35 109-150 1-35 (129)
287 TIGR03646 YtoQ_fam YtoQ family 38.7 1.6E+02 0.0034 25.7 7.0 47 477-524 69-120 (144)
288 TIGR01007 eps_fam capsular exo 38.6 57 0.0012 30.7 5.1 37 109-149 17-53 (204)
289 CHL00067 rps2 ribosomal protei 38.5 3.3E+02 0.0071 26.4 10.4 38 484-522 162-200 (230)
290 PLN03007 UDP-glucosyltransfera 38.4 54 0.0012 35.8 5.5 39 107-151 4-42 (482)
291 COG0541 Ffh Signal recognition 38.3 5.3E+02 0.011 27.6 16.8 169 411-589 158-339 (451)
292 PRK00779 ornithine carbamoyltr 37.5 4.6E+02 0.0099 26.7 12.9 89 389-492 138-226 (304)
293 PF10933 DUF2827: Protein of u 37.5 4.9E+02 0.011 27.0 26.0 147 410-573 194-345 (364)
294 PRK07308 flavodoxin; Validated 37.5 57 0.0012 28.9 4.7 27 123-149 11-37 (146)
295 PRK06924 short chain dehydroge 37.3 43 0.00093 32.5 4.2 26 125-150 8-33 (251)
296 PLN02208 glycosyltransferase f 37.1 52 0.0011 35.5 5.0 38 108-151 4-41 (442)
297 PRK14618 NAD(P)H-dependent gly 37.0 48 0.001 34.0 4.7 34 107-151 3-36 (328)
298 TIGR01012 Sa_S2_E_A ribosomal 37.0 1.4E+02 0.0029 28.3 7.2 100 419-522 44-147 (196)
299 PLN02427 UDP-apiose/xylose syn 36.9 46 0.00099 35.0 4.6 36 104-149 10-46 (386)
300 PF00389 2-Hacid_dh: D-isomer 36.9 2.5E+02 0.0053 24.2 8.6 55 465-521 20-74 (133)
301 PRK08309 short chain dehydroge 36.9 53 0.0012 30.4 4.5 25 125-150 7-31 (177)
302 KOG1429 dTDP-glucose 4-6-dehyd 36.8 57 0.0012 32.6 4.7 37 105-151 24-60 (350)
303 PF02525 Flavodoxin_2: Flavodo 36.8 57 0.0012 30.6 4.8 39 109-149 1-40 (199)
304 TIGR01281 DPOR_bchL light-inde 36.5 45 0.00098 33.0 4.3 25 124-148 8-34 (268)
305 PRK05693 short chain dehydroge 36.5 43 0.00094 33.1 4.2 34 109-151 1-34 (274)
306 TIGR01361 DAHP_synth_Bsub phos 36.3 2.4E+02 0.0052 27.9 9.3 98 412-514 29-139 (260)
307 TIGR01769 GGGP geranylgeranylg 36.2 59 0.0013 30.9 4.7 73 414-493 4-79 (205)
308 PRK06444 prephenate dehydrogen 36.2 40 0.00086 31.9 3.6 28 109-146 1-28 (197)
309 TIGR02329 propionate_PrpR prop 36.2 5.3E+02 0.012 28.5 12.7 101 423-557 85-185 (526)
310 PLN02448 UDP-glycosyltransfera 36.0 58 0.0013 35.3 5.3 41 105-151 7-49 (459)
311 cd01080 NAD_bind_m-THF_DH_Cycl 35.9 1.7E+02 0.0036 26.9 7.5 54 434-493 43-97 (168)
312 COG0299 PurN Folate-dependent 35.9 1.3E+02 0.0029 28.2 6.7 43 221-273 67-109 (200)
313 COG1832 Predicted CoA-binding 35.8 1.8E+02 0.0039 25.7 7.1 36 109-151 17-52 (140)
314 PF10093 DUF2331: Uncharacteri 35.7 1.3E+02 0.0029 31.4 7.5 110 391-513 168-288 (374)
315 TIGR01380 glut_syn glutathione 35.4 41 0.00088 34.4 3.8 40 109-151 1-40 (312)
316 PRK13397 3-deoxy-7-phosphohept 35.4 4.5E+02 0.0097 25.9 10.7 94 416-514 23-129 (250)
317 COG4109 Predicted transcriptio 35.4 1.6E+02 0.0035 30.3 7.7 104 435-553 114-218 (432)
318 PF02826 2-Hacid_dh_C: D-isome 35.3 1.5E+02 0.0033 27.3 7.3 41 477-517 85-130 (178)
319 PRK10037 cell division protein 35.1 50 0.0011 32.4 4.2 35 109-149 1-37 (250)
320 PRK00170 azoreductase; Reviewe 34.9 63 0.0014 30.3 4.8 39 108-149 1-42 (201)
321 PRK07023 short chain dehydroge 34.7 48 0.001 32.0 4.1 26 125-150 8-33 (243)
322 PRK03692 putative UDP-N-acetyl 34.5 1.3E+02 0.0028 29.5 6.9 97 420-522 90-196 (243)
323 PLN02712 arogenate dehydrogena 34.3 85 0.0018 35.8 6.4 38 103-151 47-84 (667)
324 cd03129 GAT1_Peptidase_E_like 34.1 2.9E+02 0.0063 26.1 9.3 100 418-517 12-124 (210)
325 PF10727 Rossmann-like: Rossma 34.0 26 0.00056 30.6 1.7 34 107-151 9-42 (127)
326 PRK10643 DNA-binding transcrip 34.0 3.8E+02 0.0082 24.7 10.2 110 437-557 2-118 (222)
327 PRK12921 2-dehydropantoate 2-r 33.9 48 0.001 33.5 4.0 31 109-150 1-31 (305)
328 PRK09730 putative NAD(P)-bindi 33.9 50 0.0011 31.7 4.1 32 109-149 1-32 (247)
329 PRK11199 tyrA bifunctional cho 33.7 47 0.001 34.9 4.0 33 107-149 97-129 (374)
330 PLN02896 cinnamyl-alcohol dehy 33.7 60 0.0013 33.6 4.8 33 107-149 9-41 (353)
331 PRK06522 2-dehydropantoate 2-r 33.6 52 0.0011 33.1 4.3 32 109-151 1-32 (304)
332 PRK13933 stationary phase surv 33.6 59 0.0013 32.1 4.3 39 109-155 1-39 (253)
333 COG0439 AccC Biotin carboxylas 33.5 4.3E+02 0.0093 28.5 11.1 116 415-556 57-186 (449)
334 PF00185 OTCace: Aspartate/orn 33.5 75 0.0016 28.8 4.8 36 108-152 2-37 (158)
335 COG2085 Predicted dinucleotide 33.5 47 0.001 31.6 3.5 27 125-151 7-33 (211)
336 PRK09140 2-dehydro-3-deoxy-6-p 33.4 4.3E+02 0.0093 25.1 10.3 92 408-518 63-160 (206)
337 PRK06932 glycerate dehydrogena 33.3 1.1E+02 0.0024 31.3 6.5 44 476-519 190-238 (314)
338 TIGR00670 asp_carb_tr aspartat 33.3 4.2E+02 0.0091 26.9 10.6 90 389-493 136-226 (301)
339 PRK10538 malonic semialdehyde 33.2 57 0.0012 31.6 4.3 26 125-150 7-32 (248)
340 PLN02650 dihydroflavonol-4-red 33.1 70 0.0015 33.0 5.2 34 107-150 4-37 (351)
341 COG0512 PabA Anthranilate/para 33.0 58 0.0013 30.4 3.9 33 108-150 1-33 (191)
342 TIGR01470 cysG_Nterm siroheme 32.7 65 0.0014 30.6 4.5 33 110-153 11-43 (205)
343 PRK08229 2-dehydropantoate 2-r 32.7 52 0.0011 33.9 4.1 32 108-150 2-33 (341)
344 COG0003 ArsA Predicted ATPase 32.6 70 0.0015 32.8 4.9 36 108-150 1-38 (322)
345 PRK08410 2-hydroxyacid dehydro 32.5 1.3E+02 0.0028 30.7 6.8 43 476-518 189-236 (311)
346 COG1763 MobB Molybdopterin-gua 32.4 81 0.0018 28.8 4.8 41 108-153 1-41 (161)
347 TIGR01754 flav_RNR ribonucleot 32.4 73 0.0016 28.0 4.5 35 109-148 1-35 (140)
348 COG0451 WcaG Nucleoside-diphos 32.2 53 0.0012 32.9 4.1 27 125-151 7-33 (314)
349 PLN02662 cinnamyl-alcohol dehy 32.1 77 0.0017 32.0 5.3 26 125-150 11-36 (322)
350 TIGR00087 surE 5'/3'-nucleotid 32.1 63 0.0014 31.7 4.3 39 109-155 1-39 (244)
351 COG1646 Predicted phosphate-bi 31.9 91 0.002 30.1 5.1 76 410-493 17-96 (240)
352 COG5017 Uncharacterized conser 31.9 3.7E+02 0.008 23.9 8.9 97 408-524 2-103 (161)
353 PRK06732 phosphopantothenate-- 31.8 59 0.0013 31.5 4.1 23 124-149 25-47 (229)
354 TIGR00036 dapB dihydrodipicoli 31.8 98 0.0021 30.8 5.7 36 482-517 67-102 (266)
355 PRK00048 dihydrodipicolinate r 31.6 1.1E+02 0.0023 30.3 6.0 62 477-541 54-115 (257)
356 PRK07102 short chain dehydroge 31.5 59 0.0013 31.3 4.1 27 125-151 8-34 (243)
357 PRK08177 short chain dehydroge 31.5 61 0.0013 30.9 4.1 27 125-151 8-34 (225)
358 PRK13602 putative ribosomal pr 31.2 2E+02 0.0043 22.8 6.3 53 419-478 14-66 (82)
359 PRK00094 gpsA NAD(P)H-dependen 31.1 60 0.0013 33.1 4.2 33 108-151 1-33 (325)
360 TIGR03466 HpnA hopanoid-associ 31.1 54 0.0012 33.2 3.9 26 125-150 7-32 (328)
361 PRK06101 short chain dehydroge 31.0 64 0.0014 31.1 4.3 26 125-150 8-33 (240)
362 PRK09935 transcriptional regul 31.0 4.1E+02 0.0089 24.1 10.0 113 435-557 3-123 (210)
363 PF04392 ABC_sub_bind: ABC tra 30.8 2.8E+02 0.006 27.8 9.0 92 420-514 116-218 (294)
364 PRK13934 stationary phase surv 30.7 70 0.0015 31.8 4.3 39 109-155 1-39 (266)
365 COG0496 SurE Predicted acid ph 30.7 68 0.0015 31.5 4.2 39 109-155 1-39 (252)
366 PF04321 RmlD_sub_bind: RmlD s 30.5 48 0.0011 33.3 3.4 31 109-149 1-31 (286)
367 PRK08655 prephenate dehydrogen 30.5 60 0.0013 34.9 4.2 33 109-151 1-33 (437)
368 PRK05246 glutathione synthetas 30.4 55 0.0012 33.4 3.8 41 108-151 1-41 (316)
369 PRK13935 stationary phase surv 30.2 73 0.0016 31.4 4.4 39 109-155 1-39 (253)
370 PRK12745 3-ketoacyl-(acyl-carr 30.2 69 0.0015 31.0 4.4 26 125-150 9-34 (256)
371 PLN00414 glycosyltransferase f 30.0 82 0.0018 34.0 5.1 38 108-151 4-41 (446)
372 COG0702 Predicted nucleoside-d 29.8 55 0.0012 32.0 3.6 30 125-154 7-36 (275)
373 PLN00198 anthocyanidin reducta 29.7 88 0.0019 32.0 5.3 26 125-150 16-41 (338)
374 COG0489 Mrp ATPases involved i 29.7 5.6E+02 0.012 25.3 11.4 38 108-149 56-93 (265)
375 cd03145 GAT1_cyanophycinase Ty 29.6 4.5E+02 0.0098 25.1 9.8 83 434-517 28-127 (217)
376 PLN02410 UDP-glucoronosyl/UDP- 29.6 93 0.002 33.6 5.5 41 106-152 5-45 (451)
377 PLN02686 cinnamoyl-CoA reducta 29.5 85 0.0018 32.8 5.1 26 125-150 60-85 (367)
378 TIGR00288 conserved hypothetic 29.5 2.1E+02 0.0046 26.0 6.8 65 420-490 90-155 (160)
379 PRK05708 2-dehydropantoate 2-r 29.3 69 0.0015 32.6 4.2 33 108-151 2-34 (305)
380 PRK00346 surE 5'(3')-nucleotid 29.2 78 0.0017 31.2 4.4 39 109-155 1-39 (250)
381 PRK06753 hypothetical protein; 29.1 66 0.0014 33.4 4.2 30 109-149 1-30 (373)
382 PF03721 UDPG_MGDP_dh_N: UDP-g 29.1 56 0.0012 30.5 3.3 30 109-149 1-30 (185)
383 TIGR03018 pepcterm_TyrKin exop 29.1 1.1E+02 0.0025 28.8 5.5 39 107-149 33-72 (207)
384 PRK05562 precorrin-2 dehydroge 29.0 89 0.0019 30.2 4.7 28 125-153 32-59 (223)
385 TIGR02154 PhoB phosphate regul 28.9 4.6E+02 0.01 24.1 10.3 110 437-557 4-122 (226)
386 PLN02583 cinnamoyl-CoA reducta 28.9 76 0.0016 31.9 4.5 26 125-150 13-38 (297)
387 PRK06953 short chain dehydroge 28.8 63 0.0014 30.7 3.7 26 125-150 8-33 (222)
388 PRK12827 short chain dehydroge 28.7 74 0.0016 30.5 4.3 25 125-149 13-37 (249)
389 PRK05993 short chain dehydroge 28.6 77 0.0017 31.4 4.4 27 125-151 11-37 (277)
390 PRK15181 Vi polysaccharide bio 28.6 73 0.0016 32.9 4.4 26 125-150 22-47 (348)
391 PRK10336 DNA-binding transcrip 28.6 4.6E+02 0.01 24.0 10.3 66 483-556 44-117 (219)
392 PRK12825 fabG 3-ketoacyl-(acyl 28.4 78 0.0017 30.2 4.4 27 125-151 13-39 (249)
393 PRK02122 glucosamine-6-phospha 28.3 1.2E+02 0.0025 34.5 6.2 38 108-151 369-406 (652)
394 PLN02342 ornithine carbamoyltr 28.3 6.9E+02 0.015 25.9 12.0 128 322-492 139-268 (348)
395 PF06506 PrpR_N: Propionate ca 28.3 1.8E+02 0.0038 26.8 6.5 92 421-513 19-131 (176)
396 PRK06487 glycerate dehydrogena 28.3 1.4E+02 0.0031 30.5 6.4 45 476-520 190-239 (317)
397 PRK08883 ribulose-phosphate 3- 28.2 5.4E+02 0.012 24.7 12.9 75 420-498 69-143 (220)
398 PRK08105 flavodoxin; Provision 28.1 95 0.0021 27.8 4.5 27 123-149 11-37 (149)
399 PRK10529 DNA-binding transcrip 28.0 4.9E+02 0.011 24.1 10.1 110 437-557 3-118 (225)
400 PLN02764 glycosyltransferase f 28.0 1.1E+02 0.0024 33.1 5.6 40 107-152 4-43 (453)
401 PTZ00254 40S ribosomal protein 27.9 2.1E+02 0.0047 28.0 7.0 101 418-522 52-157 (249)
402 PF13614 AAA_31: AAA domain; P 27.9 1.3E+02 0.0027 26.7 5.3 27 123-149 10-36 (157)
403 PF06564 YhjQ: YhjQ protein; 27.6 99 0.0021 30.3 4.8 37 109-151 1-39 (243)
404 PLN02863 UDP-glucoronosyl/UDP- 27.6 1.1E+02 0.0023 33.4 5.6 41 106-152 7-47 (477)
405 cd01967 Nitrogenase_MoFe_alpha 27.5 2E+02 0.0043 30.5 7.6 94 416-512 133-236 (406)
406 PRK08267 short chain dehydroge 27.5 78 0.0017 30.9 4.2 27 125-151 8-34 (260)
407 PLN02214 cinnamoyl-CoA reducta 27.4 85 0.0018 32.4 4.6 27 125-151 17-43 (342)
408 PRK05583 ribosomal protein L7A 27.4 3.3E+02 0.0072 22.7 7.3 77 420-503 21-97 (104)
409 PRK06027 purU formyltetrahydro 27.4 4E+02 0.0087 26.8 9.3 164 20-253 15-183 (286)
410 TIGR03787 marine_sort_RR prote 27.4 5E+02 0.011 24.1 10.8 81 471-556 30-119 (227)
411 PRK09004 FMN-binding protein M 27.3 1E+02 0.0022 27.5 4.5 27 123-149 11-37 (146)
412 PF13241 NAD_binding_7: Putati 27.3 63 0.0014 26.8 3.0 27 125-152 14-40 (103)
413 PRK11475 DNA-binding transcrip 27.1 3.9E+02 0.0084 25.3 8.8 83 470-556 22-114 (207)
414 PF02635 DrsE: DsrE/DsrF-like 27.0 1.6E+02 0.0035 24.5 5.7 39 109-150 1-42 (122)
415 COG2084 MmsB 3-hydroxyisobutyr 26.8 76 0.0016 31.9 3.9 25 126-150 7-31 (286)
416 PRK05884 short chain dehydroge 26.7 80 0.0017 30.1 4.1 26 125-150 7-32 (223)
417 PRK10816 DNA-binding transcrip 26.6 5.2E+02 0.011 23.9 10.1 81 471-556 30-117 (223)
418 cd03146 GAT1_Peptidase_E Type 26.5 4.2E+02 0.009 25.2 8.9 107 409-517 3-124 (212)
419 PRK08340 glucose-1-dehydrogena 26.5 85 0.0018 30.6 4.3 27 125-151 7-33 (259)
420 PF00258 Flavodoxin_1: Flavodo 26.5 1E+02 0.0022 27.0 4.3 29 123-151 6-34 (143)
421 PRK12320 hypothetical protein; 26.5 77 0.0017 36.2 4.3 32 109-150 1-32 (699)
422 PRK05920 aromatic acid decarbo 26.4 1.2E+02 0.0025 28.9 4.9 36 108-151 3-39 (204)
423 PTZ00408 NAD-dependent deacety 26.4 5.4E+02 0.012 25.1 9.8 54 463-516 150-208 (242)
424 PLN02928 oxidoreductase family 26.3 1.5E+02 0.0032 30.9 6.1 45 474-518 217-266 (347)
425 PRK03767 NAD(P)H:quinone oxido 26.3 1E+02 0.0022 29.0 4.6 37 108-149 1-38 (200)
426 COG3349 Uncharacterized conser 26.2 78 0.0017 34.3 4.0 31 109-150 1-31 (485)
427 COG4088 Predicted nucleotide k 26.2 66 0.0014 30.7 3.1 38 109-151 1-38 (261)
428 TIGR01430 aden_deam adenosine 26.1 7E+02 0.015 25.3 12.8 138 421-587 171-321 (324)
429 COG0373 HemA Glutamyl-tRNA red 25.9 8.3E+02 0.018 26.1 18.7 135 391-555 166-305 (414)
430 PRK06947 glucose-1-dehydrogena 25.8 82 0.0018 30.3 4.0 25 125-149 9-33 (248)
431 PRK12595 bifunctional 3-deoxy- 25.8 7.8E+02 0.017 25.7 11.5 91 419-514 129-232 (360)
432 TIGR03029 EpsG chain length de 25.6 1.3E+02 0.0028 29.9 5.4 39 107-149 101-139 (274)
433 PRK11104 hemG protoporphyrinog 25.6 94 0.002 28.7 4.1 35 109-149 1-35 (177)
434 PRK00211 sulfur relay protein 25.5 1.3E+02 0.0027 25.9 4.6 38 108-149 1-39 (119)
435 PLN02527 aspartate carbamoyltr 25.5 7.1E+02 0.015 25.3 10.7 90 389-492 137-227 (306)
436 cd02812 PcrB_like PcrB_like pr 25.4 1.3E+02 0.0029 28.9 5.1 54 434-493 24-80 (219)
437 cd07940 DRE_TIM_IPMS 2-isoprop 25.3 6.2E+02 0.013 24.9 10.2 103 419-522 111-229 (268)
438 PRK13011 formyltetrahydrofolat 25.3 4.6E+02 0.0099 26.4 9.2 108 105-273 86-195 (286)
439 cd02040 NifH NifH gene encodes 25.2 91 0.002 30.7 4.3 25 125-149 10-36 (270)
440 PF03435 Saccharop_dh: Sacchar 25.1 2.2E+02 0.0047 29.9 7.3 69 437-512 25-96 (386)
441 PRK06180 short chain dehydroge 24.9 95 0.0021 30.7 4.3 26 125-150 11-36 (277)
442 KOG2452 Formyltetrahydrofolate 24.9 1.2E+02 0.0025 32.2 4.9 30 109-149 1-30 (881)
443 TIGR02026 BchE magnesium-proto 24.8 3.5E+02 0.0076 29.6 9.0 86 418-504 221-316 (497)
444 PTZ00124 adenosine deaminase; 24.8 8.1E+02 0.018 25.6 15.4 155 409-589 193-360 (362)
445 COG4394 Uncharacterized protei 24.7 5.5E+02 0.012 25.9 9.0 110 391-514 164-283 (370)
446 COG1440 CelA Phosphotransferas 24.5 4.2E+02 0.009 22.1 7.3 37 108-150 1-37 (102)
447 COG0036 Rpe Pentose-5-phosphat 24.5 3E+02 0.0064 26.5 7.1 76 419-498 71-146 (220)
448 TIGR00655 PurU formyltetrahydr 24.4 6.4E+02 0.014 25.2 10.0 97 105-254 81-179 (280)
449 cd03174 DRE_TIM_metallolyase D 24.3 6.6E+02 0.014 24.4 11.4 100 420-522 113-230 (265)
450 PLN02927 antheraxanthin epoxid 23.9 1.5E+02 0.0032 33.8 6.0 34 105-149 78-111 (668)
451 PLN02989 cinnamyl-alcohol dehy 23.9 1.3E+02 0.0027 30.6 5.1 26 125-150 12-37 (325)
452 PRK01372 ddl D-alanine--D-alan 23.8 1.3E+02 0.0027 30.4 5.0 40 108-149 4-43 (304)
453 TIGR00872 gnd_rel 6-phosphoglu 23.8 1.1E+02 0.0023 31.1 4.4 31 109-150 1-31 (298)
454 PHA02519 plasmid partition pro 23.7 1.1E+02 0.0025 32.2 4.8 37 107-149 104-142 (387)
455 PRK13185 chlL protochlorophyll 23.7 1.1E+02 0.0024 30.2 4.5 34 109-149 2-37 (270)
456 COG1090 Predicted nucleoside-d 23.7 76 0.0016 31.6 3.1 29 124-152 4-32 (297)
457 PRK14620 NAD(P)H-dependent gly 23.7 99 0.0022 31.6 4.3 32 109-151 1-32 (326)
458 PRK12743 oxidoreductase; Provi 23.7 1E+02 0.0022 30.1 4.2 26 125-150 9-34 (256)
459 KOG2884 26S proteasome regulat 23.6 6.6E+02 0.014 24.1 13.2 118 405-556 107-228 (259)
460 TIGR02622 CDP_4_6_dhtase CDP-g 23.6 1E+02 0.0022 31.8 4.3 25 125-149 11-35 (349)
461 PF00852 Glyco_transf_10: Glyc 23.6 85 0.0018 32.6 3.7 79 477-569 221-306 (349)
462 PRK09836 DNA-binding transcrip 23.5 6E+02 0.013 23.6 10.6 69 483-556 44-117 (227)
463 PRK15438 erythronate-4-phospha 23.4 2.2E+02 0.0048 29.9 6.7 42 477-518 161-211 (378)
464 TIGR01214 rmlD dTDP-4-dehydror 23.4 90 0.002 30.9 3.8 26 125-150 6-31 (287)
465 TIGR01963 PHB_DH 3-hydroxybuty 23.3 99 0.0021 29.8 4.1 27 125-151 8-34 (255)
466 cd02032 Bchl_like This family 23.2 1E+02 0.0022 30.4 4.2 26 124-149 8-35 (267)
467 CHL00148 orf27 Ycf27; Reviewed 23.2 6.2E+02 0.013 23.6 10.7 111 435-556 6-122 (240)
468 PRK05723 flavodoxin; Provision 23.2 1.3E+02 0.0027 27.1 4.3 36 109-149 1-36 (151)
469 COG1052 LdhA Lactate dehydroge 23.2 2.2E+02 0.0047 29.3 6.5 44 477-520 194-242 (324)
470 PRK11908 NAD-dependent epimera 23.1 1.1E+02 0.0023 31.6 4.4 32 108-149 1-33 (347)
471 PRK11858 aksA trans-homoaconit 23.0 6.8E+02 0.015 26.2 10.4 20 501-520 207-226 (378)
472 TIGR01968 minD_bact septum sit 22.9 1.2E+02 0.0025 29.6 4.5 26 124-149 10-37 (261)
473 PRK10446 ribosomal protein S6 22.9 1.1E+02 0.0023 31.0 4.3 35 109-151 1-35 (300)
474 PRK12367 short chain dehydroge 22.9 1.1E+02 0.0024 29.8 4.3 26 125-150 21-46 (245)
475 PRK11891 aspartate carbamoyltr 22.6 7.6E+02 0.016 26.5 10.6 93 389-492 223-317 (429)
476 PRK07453 protochlorophyllide o 22.5 1.2E+02 0.0026 30.8 4.7 33 109-150 6-38 (322)
477 PRK09581 pleD response regulat 22.5 9E+02 0.02 25.3 11.9 80 472-556 33-121 (457)
478 PRK12824 acetoacetyl-CoA reduc 22.5 1.1E+02 0.0024 29.2 4.2 27 125-151 9-35 (245)
479 PLN02173 UDP-glucosyl transfer 22.3 1.5E+02 0.0032 32.1 5.3 38 108-151 5-42 (449)
480 PRK05331 putative phosphate ac 22.3 8.7E+02 0.019 25.0 12.6 52 414-471 8-62 (334)
481 PRK08673 3-deoxy-7-phosphohept 22.2 8.8E+02 0.019 25.0 13.3 102 408-514 94-207 (335)
482 PRK14571 D-alanyl-alanine synt 22.2 1.5E+02 0.0031 29.9 5.1 39 109-149 1-39 (299)
483 PRK13837 two-component VirA-li 22.1 7.4E+02 0.016 29.1 11.6 108 436-556 698-813 (828)
484 PLN02653 GDP-mannose 4,6-dehyd 22.1 1.1E+02 0.0023 31.4 4.2 26 125-150 13-38 (340)
485 PRK00711 D-amino acid dehydrog 22.0 1.1E+02 0.0024 32.3 4.5 31 109-150 1-31 (416)
486 COG0240 GpsA Glycerol-3-phosph 22.0 1.2E+02 0.0026 31.1 4.3 33 108-151 1-33 (329)
487 PRK06483 dihydromonapterin red 22.0 1.2E+02 0.0026 29.0 4.3 26 125-150 9-34 (236)
488 CHL00175 minD septum-site dete 21.8 1.7E+02 0.0037 29.1 5.5 37 107-149 13-51 (281)
489 PRK06552 keto-hydroxyglutarate 21.8 7.1E+02 0.015 23.8 11.3 92 408-518 68-164 (213)
490 PLN02240 UDP-glucose 4-epimera 21.8 1.2E+02 0.0025 31.2 4.4 25 125-149 12-36 (352)
491 PRK05653 fabG 3-ketoacyl-(acyl 21.8 1.3E+02 0.0028 28.7 4.5 27 125-151 12-38 (246)
492 PRK06914 short chain dehydroge 21.7 1.2E+02 0.0025 30.0 4.3 27 125-151 10-36 (280)
493 PRK05565 fabG 3-ketoacyl-(acyl 21.7 1.2E+02 0.0025 29.1 4.2 24 125-148 12-35 (247)
494 PF03853 YjeF_N: YjeF-related 21.7 2E+02 0.0043 26.3 5.4 36 107-149 24-59 (169)
495 PRK05868 hypothetical protein; 21.7 1.1E+02 0.0024 31.9 4.3 31 108-149 1-31 (372)
496 PRK10569 NAD(P)H-dependent FMN 21.5 1.8E+02 0.0038 27.3 5.1 37 109-149 1-38 (191)
497 PRK05395 3-dehydroquinate dehy 21.5 2E+02 0.0043 25.7 5.0 87 466-556 46-141 (146)
498 PRK11519 tyrosine kinase; Prov 21.4 2.9E+02 0.0063 31.9 7.9 38 108-149 525-562 (719)
499 PRK07417 arogenate dehydrogena 21.4 1.1E+02 0.0024 30.6 3.9 32 109-151 1-32 (279)
500 PRK13235 nifH nitrogenase redu 21.3 1.2E+02 0.0026 30.1 4.2 26 124-149 9-36 (274)
No 1
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=5.2e-70 Score=598.41 Aligned_cols=482 Identities=47% Similarity=0.827 Sum_probs=412.0
Q ss_pred CCCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccce-eeeEEeecCCceEEEEEE
Q 043397 105 DSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLAL-ITTYNSYHDGNWVATNAY 183 (596)
Q Consensus 105 ~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 183 (596)
.++.|||+||++++.|+.++||++.++..|.++|+++||+|.|++|.|.+........... ...+.++.++.....++|
T Consensus 478 ~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~ 557 (977)
T PLN02939 478 TSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIW 557 (977)
T ss_pred CCCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEE
Confidence 4677999999999999999999999999999999999999999999999876443333322 223334455566668899
Q ss_pred eeeeCCeEEEEEcCCc--cccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhcc
Q 043397 184 HGVVSSIPVIFIEPSN--QFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLS 261 (596)
Q Consensus 184 ~~~~~gv~v~~~~~~~--~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~ 261 (596)
....+||++|++.+.. .+|.+..+|+. .++.+||.+|++++++++...+.+|||||+|+|++++++.+++..|....
T Consensus 558 ~~~~~GV~vyfId~~~~~~fF~R~~iYg~-~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~~~ 636 (977)
T PLN02939 558 TGTVEGLPVYFIEPQHPSKFFWRAQYYGE-HDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKG 636 (977)
T ss_pred EEEECCeeEEEEecCCchhccCCCCCCCC-ccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHHhhcc
Confidence 9999999999998533 47888888964 48899999999999999988778999999999999998666665554433
Q ss_pred CCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhc
Q 043397 262 LKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCS 341 (596)
Q Consensus 262 ~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~ 341 (596)
+.++|+|+|+||..++|.++...+..+|++...+...+...+ ..+..+++++.++.+||.|+|||+++++++...
T Consensus 637 ~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~-----~~~~~iN~LK~GIv~AD~VtTVSptYA~EI~te 711 (977)
T PLN02939 637 FNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQD-----NAHGRINVVKGAIVYSNIVTTVSPTYAQEVRSE 711 (977)
T ss_pred CCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhh-----ccCCchHHHHHHHHhCCeeEeeeHHHHHHHHHH
Confidence 567899999999999999877777777887766532222211 124678999999999999999999999998752
Q ss_pred -c-hhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCC-CCccEEEEEeccccc
Q 043397 342 -G-WLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSE-GTVPLVVCITRLVAQ 418 (596)
Q Consensus 342 -g-~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~-~~~~~il~iGrl~~~ 418 (596)
| .+...+..+..++.+|+||||++.|+|.+|.+++..|+...+++|..++..+++++|++.+ ++.++|+|+||+.++
T Consensus 712 ~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~Q 791 (977)
T PLN02939 712 GGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRLVPQ 791 (977)
T ss_pred hccchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeecCCcc
Confidence 2 1556677888999999999999999999999999999999999999999999999999742 467999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEecCCCCcc---hHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCC
Q 043397 419 KGLHLITHAIKRAEELGGQMILLGNSPVHWV---QKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEP 495 (596)
Q Consensus 419 KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~---~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~ 495 (596)
||++.+++|+..+.+++++|+|+|+ |+. .+.++.++++++..++|.|+|.++++..+.+|++||++|+||++|+
T Consensus 792 KGiDlLleA~~~Ll~~dvqLVIvGd---Gp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaADIFLmPSr~EP 868 (977)
T PLN02939 792 KGVHLIRHAIYKTAELGGQFVLLGS---SPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASDMFIIPSMFEP 868 (977)
T ss_pred cChHHHHHHHHHHhhcCCEEEEEeC---CCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCCEEEECCCccC
Confidence 9999999999988777899999999 643 5778889999998889999999999989999999999999999999
Q ss_pred CchHHHHHHhcCCceEEeCCCCccccccccCCCCC-CCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043397 496 CGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSN-HEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME 574 (596)
Q Consensus 496 ~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~-~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~ 574 (596)
||++++|||+||+|||++++||+.|+|.+++.... .++.|||+|++.|+++|+++|.++++.+.++++.|.+|+++++.
T Consensus 869 fGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~~dpe~~~~L~~~am~ 948 (977)
T PLN02939 869 CGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYYKRKPEVWKQLVQKDMN 948 (977)
T ss_pred CcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999987543222 23579999999999999999999998777789999999999888
Q ss_pred hcCCHHHHHHHHHHHHHHHhc
Q 043397 575 NDNSWNNAAGKYMEIYNSIRV 595 (596)
Q Consensus 575 ~~fs~~~~~~~~~~iy~~l~~ 595 (596)
.+|||+.++++|.++|++++.
T Consensus 949 ~dFSWe~~A~qYeeLY~~ll~ 969 (977)
T PLN02939 949 IDFSWDSSASQYEELYQRAVA 969 (977)
T ss_pred hcCCHHHHHHHHHHHHHHHHH
Confidence 899999999999999998864
No 2
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=1.2e-64 Score=546.47 Aligned_cols=469 Identities=27% Similarity=0.501 Sum_probs=385.9
Q ss_pred CCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhh--hcccceeeeEEeecCCceEEEEEE
Q 043397 106 SNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQE--ISDLALITTYNSYHDGNWVATNAY 183 (596)
Q Consensus 106 ~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 183 (596)
+++|||+|+++|..|+.++||+++++..|.++|+++||+|.|++|.|.+..... .........+.++.........+.
T Consensus 3 ~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (489)
T PRK14098 3 RRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLHVK 82 (489)
T ss_pred CCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceEEEEEEEeecCeeEEEEEE
Confidence 466999999999999999999999999999999999999999999998875421 222222333444433221122222
Q ss_pred eeee--CCeEEEEEcCCccccCCCcccCCC-----h-hhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHH
Q 043397 184 HGVV--SSIPVIFIEPSNQFFKGKNVYGGS-----Y-NELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWD 255 (596)
Q Consensus 184 ~~~~--~gv~v~~~~~~~~~~~~~~~y~~~-----~-~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~ 255 (596)
.... .|+++|++. ++.+|.+..+|+.. | ++.+|+.+|+++++++++..+.+|||||+|+|+++++|.+++.
T Consensus 83 ~~~~~~~~v~~~~~~-~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t~l~~~~l~~ 161 (489)
T PRK14098 83 VTALPSSKIQTYFLY-NEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYAGLVPLLLKT 161 (489)
T ss_pred EecccCCCceEEEEe-CHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHH
Confidence 2223 369999998 45778888899752 4 8999999999999999987777999999999999999998876
Q ss_pred Hhhhcc-CCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhh
Q 043397 256 MYQSLS-LKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTY 334 (596)
Q Consensus 256 ~~~~~~-~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~ 334 (596)
.+.... +.++|+|+|+|+..+++.+....+... ++...+... ......+++++.++.+||.|+|+|+.+
T Consensus 162 ~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~-~~~~~~~~~---------~~~~~~~n~lk~~i~~ad~VitVS~~~ 231 (489)
T PRK14098 162 VYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKL-LPEEVCSGL---------HREGDEVNMLYTGVEHADLLTTTSPRY 231 (489)
T ss_pred HhhhccccCCCCEEEEcCCCcccCCCCHHHHHHh-CCHHhhhhh---------hhcCCcccHHHHHHHhcCcceeeCHHH
Confidence 543322 458999999999998876654433222 222222111 111256789999999999999999999
Q ss_pred HHHHhhc---c-hhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEE
Q 043397 335 LKETLCS---G-WLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVV 410 (596)
Q Consensus 335 ~~~~~~~---g-~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il 410 (596)
++++... | .+...+.....++.+|+||||++.|+|.++..++..|+...+++|..+|..+++++|++.+++.++|+
T Consensus 232 a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~~~~~~~i~ 311 (489)
T PRK14098 232 AEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPFDEETPLVG 311 (489)
T ss_pred HHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCCccCCCEEE
Confidence 9998752 1 14555666688999999999999999999988899999988899999999999999998667889999
Q ss_pred EEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCc--chHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEE
Q 043397 411 CITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHW--VQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVL 488 (596)
Q Consensus 411 ~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~--~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l 488 (596)
++||+.++||++.+++|+.++.+++++|+|+|+ |+ +.+.+++++++++ ++|.|.|.++++++..+|++||+++
T Consensus 312 ~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~---G~~~~~~~l~~l~~~~~--~~V~~~g~~~~~~~~~~~a~aDi~l 386 (489)
T PRK14098 312 VIINFDDFQGAELLAESLEKLVELDIQLVICGS---GDKEYEKRFQDFAEEHP--EQVSVQTEFTDAFFHLAIAGLDMLL 386 (489)
T ss_pred EeccccccCcHHHHHHHHHHHHhcCcEEEEEeC---CCHHHHHHHHHHHHHCC--CCEEEEEecCHHHHHHHHHhCCEEE
Confidence 999999999999999999999877899999998 65 5678899988874 5899999999999999999999999
Q ss_pred EcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHH
Q 043397 489 VPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRI 568 (596)
Q Consensus 489 ~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~ 568 (596)
+||.+|+||++++|||+||+|||++++||+.|++.+... .+++|+++++.|+++|+++|.++++.+. +++.+.++
T Consensus 387 ~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~----~~~~G~l~~~~d~~~la~ai~~~l~~~~-~~~~~~~~ 461 (489)
T PRK14098 387 MPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSE----DKGSGFIFHDYTPEALVAKLGEALALYH-DEERWEEL 461 (489)
T ss_pred eCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCC----CCCceeEeCCCCHHHHHHHHHHHHHHHc-CHHHHHHH
Confidence 999999999999999999999999999999999975321 1479999999999999999999887664 78999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 043397 569 VQKIMENDNSWNNAAGKYMEIYNSIRV 595 (596)
Q Consensus 569 ~~~~~~~~fs~~~~~~~~~~iy~~l~~ 595 (596)
++++++++|||++++++|+++|++++.
T Consensus 462 ~~~~~~~~fsw~~~a~~y~~lY~~~~~ 488 (489)
T PRK14098 462 VLEAMERDFSWKNSAEEYAQLYRELLG 488 (489)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHhc
Confidence 999888999999999999999999864
No 3
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=1.4e-62 Score=529.85 Aligned_cols=466 Identities=31% Similarity=0.520 Sum_probs=375.1
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeee
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGV 186 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (596)
++|||||+++|..|+.++||+++++..|.++|+++||+|.|++|.|.+.... .........+..+.++ ...++...
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~ 77 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAG-IEDAEQVHSFPDLFGG---PARLLAAR 77 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhh-hcCceEEEEEeeeCCc---eEEEEEEE
Confidence 3599999999999999999999999999999999999999999999988432 3333333334333332 45677788
Q ss_pred eCCeEEEEEcCCccccCCC-cccCC----Ch-hhHHHHHHHHHHHHHHHHhh--CCCCcEEEEcCCccchHHHHHHHHhh
Q 043397 187 VSSIPVIFIEPSNQFFKGK-NVYGG----SY-NELEAYLFFSRACLEWMQVT--GVQPDIIHVHEWQIGALPLLYWDMYQ 258 (596)
Q Consensus 187 ~~gv~v~~~~~~~~~~~~~-~~y~~----~~-~~~~~~~~f~~~~~~~l~~~--~~~pDVIh~~~~~~~~~~~~~~~~~~ 258 (596)
.+||++|+++++ .+|.+. .+|+. +| ++.+||.+|+++++++++.. ..+|||||+|+|+++++|.++...
T Consensus 78 ~~~v~~~~~~~~-~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~l~~~~l~~~-- 154 (485)
T PRK14099 78 AGGLDLFVLDAP-HLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAGLAPAYLHYS-- 154 (485)
T ss_pred eCCceEEEEeCh-HhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHHHHHHHHHhC--
Confidence 899999999954 455544 47853 22 79999999999999988753 579999999999999998876421
Q ss_pred hccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHH
Q 043397 259 SLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKET 338 (596)
Q Consensus 259 ~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~ 338 (596)
...++|+|+|+||..+++.+....+...++....+...... +...+++++.++++||.|+|+|+.+++++
T Consensus 155 --~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~k~~i~~ad~vitVS~~~a~ei 224 (485)
T PRK14099 155 --GRPAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVE--------YYGGIGYLKAGLQLADRITTVSPTYALEI 224 (485)
T ss_pred --CCCCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhh--------hCCCccHHHHHHHhcCeeeecChhHHHHH
Confidence 12468999999999988877666666666665544321111 12445778999999999999999999998
Q ss_pred hhc--ch-hhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecc
Q 043397 339 LCS--GW-LASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRL 415 (596)
Q Consensus 339 ~~~--g~-l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl 415 (596)
... |+ +...+..+..++.+|+||||++.|+|.++..++..|+...+++|..++..+++++|++.+++.++|+++||+
T Consensus 225 ~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~li~~VgRL 304 (485)
T PRK14099 225 QGPEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDPDPDALLLGVISRL 304 (485)
T ss_pred hcccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCcccCCcEEEEEecC
Confidence 742 21 344556668899999999999999999999999999988888899999999999999755567899999999
Q ss_pred cccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcE-EEEeccCHHHHHHHH-HhCCEEEEcCCC
Q 043397 416 VAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTST-RILLMYSEELSHMLY-AAADIVLVPSIY 493 (596)
Q Consensus 416 ~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V-~~~g~~~~~~l~~~~-a~aDi~l~PS~~ 493 (596)
.++||++.+++|++++.+.+++|+|+|+ +++.+.+.+++++++++ .++ .|+|+ ++++..+| ++||++++||.+
T Consensus 305 ~~~KG~d~Li~A~~~l~~~~~~lvivG~-G~~~~~~~l~~l~~~~~--~~v~~~~G~--~~~l~~~~~a~aDifv~PS~~ 379 (485)
T PRK14099 305 SWQKGLDLLLEALPTLLGEGAQLALLGS-GDAELEARFRAAAQAYP--GQIGVVIGY--DEALAHLIQAGADALLVPSRF 379 (485)
T ss_pred CccccHHHHHHHHHHHHhcCcEEEEEec-CCHHHHHHHHHHHHHCC--CCEEEEeCC--CHHHHHHHHhcCCEEEECCcc
Confidence 9999999999999999877899999998 22235778888888765 345 67787 45577765 679999999999
Q ss_pred CCCchHHHHHHhcCCceEEeCCCCccccccccCCCC-CCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 043397 494 EPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPS-NHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKI 572 (596)
Q Consensus 494 E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~-~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~ 572 (596)
|+||++++|||+||+|||++++||++|+|.+.+... ..+..+|+++++.|+++|+++|.+++..+. |++.+++|++++
T Consensus 380 E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~~-d~~~~~~l~~~~ 458 (485)
T PRK14099 380 EPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALFA-DPVAWRRLQRNG 458 (485)
T ss_pred CCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHHh
Confidence 999999999999999999999999999998732100 001168999999999999999998655443 889999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhc
Q 043397 573 MENDNSWNNAAGKYMEIYNSIRV 595 (596)
Q Consensus 573 ~~~~fs~~~~~~~~~~iy~~l~~ 595 (596)
++++|||++++++|+++|++++.
T Consensus 459 ~~~~fSw~~~a~~y~~lY~~l~~ 481 (485)
T PRK14099 459 MTTDVSWRNPAQHYAALYRSLVA 481 (485)
T ss_pred hhhcCChHHHHHHHHHHHHHHHh
Confidence 88899999999999999999864
No 4
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=5.5e-62 Score=528.68 Aligned_cols=466 Identities=40% Similarity=0.712 Sum_probs=390.4
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeC
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVS 188 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (596)
|||+++|++++|+.++||+++++..|+++|+++||+|.|++|.|.+................+..++.....+++....+
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVE 80 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEEC
Confidence 89999999999998999999999999999999999999999999887554333334455567777888889999999999
Q ss_pred CeEEEEEcCCccccCC-CcccCCCh-hhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCc
Q 043397 189 SIPVIFIEPSNQFFKG-KNVYGGSY-NELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPR 266 (596)
Q Consensus 189 gv~v~~~~~~~~~~~~-~~~y~~~~-~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~p 266 (596)
|++++++++. .++.+ ..+|+.++ ++..++..|++++.++++..+.+|||||+|+|++++++.+++..+.. .++|
T Consensus 81 ~v~~~~i~~~-~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~~~~~~l~~~~~~---~~~~ 156 (473)
T TIGR02095 81 GVPVYFIDNP-SLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTALVPALLKAVYRP---NPIK 156 (473)
T ss_pred CceEEEEECH-HHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHhhccC---CCCC
Confidence 9999999953 34444 45888544 67889999999999999877789999999999999999887654211 1489
Q ss_pred EEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhc--c-h
Q 043397 267 IVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCS--G-W 343 (596)
Q Consensus 267 vv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~--g-~ 343 (596)
+|+|+|+..+++.++...+...+++...+..... .....+++++.++.+||.|+++|+.+++++... | .
T Consensus 157 ~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~ 228 (473)
T TIGR02095 157 TVFTIHNLAYQGVFPADDFSELGLPPEYFHMEGL--------EFYGRVNFLKGGIVYADRVTTVSPTYAREILTPEFGYG 228 (473)
T ss_pred EEEEcCCCccCCcCCHHHHHHcCCChHHcCchhh--------hcCCchHHHHHHHHhCCcCeecCHhHHHHhcCCcCCcc
Confidence 9999999988777665555444554333221100 012357788999999999999999999998742 2 1
Q ss_pred hhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHH
Q 043397 344 LASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHL 423 (596)
Q Consensus 344 l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ 423 (596)
+...+..+..++.+|+||+|++.|+|..+..++..|+.....++..++..+++++|++.+++.++|+|+||+.++||++.
T Consensus 229 l~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~ 308 (473)
T TIGR02095 229 LDGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPVDDDVPLFGVISRLTQQKGVDL 308 (473)
T ss_pred chhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCccCCCCEEEEEecCccccChHH
Confidence 34444556789999999999999999989888889998888888889999999999975457899999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCC--cchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHH
Q 043397 424 ITHAIKRAEELGGQMILLGNSPVH--WVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQM 501 (596)
Q Consensus 424 ll~A~~~l~~~~~~lvIvG~~~~g--~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~l 501 (596)
+++|++++.+.+++|+|+|+ | .+.+.+++++++++ .++.+.+.++++++..+|++||++++||.+|+||++++
T Consensus 309 li~a~~~l~~~~~~lvi~G~---g~~~~~~~l~~~~~~~~--~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~l 383 (473)
T TIGR02095 309 LLAALPELLELGGQLVVLGT---GDPELEEALRELAERYP--GNVRVIIGYDEALAHLIYAGADFILMPSRFEPCGLTQL 383 (473)
T ss_pred HHHHHHHHHHcCcEEEEECC---CCHHHHHHHHHHHHHCC--CcEEEEEcCCHHHHHHHHHhCCEEEeCCCcCCcHHHHH
Confidence 99999999877899999999 6 46678888887764 47999999999999999999999999999999999999
Q ss_pred HHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCHHH
Q 043397 502 IGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIMENDNSWNN 581 (596)
Q Consensus 502 EAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~ 581 (596)
|||+||+|||++++||+.|+|.+++.. .++++|+++++.|+++|+++|.++++.+.++++.+++|++++++++|||++
T Consensus 384 EAma~G~pvI~s~~gg~~e~v~~~~~~--~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~~~fsw~~ 461 (473)
T TIGR02095 384 YAMRYGTVPIVRRTGGLADTVVDGDPE--AESGTGFLFEEYDPGALLAALSRALRLYRQDPSLWEALQKNAMSQDFSWDK 461 (473)
T ss_pred HHHHCCCCeEEccCCCccceEecCCCC--CCCCceEEeCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCcHH
Confidence 999999999999999999999883211 112899999999999999999999988877899999999999888999999
Q ss_pred HHHHHHHHHHHH
Q 043397 582 AAGKYMEIYNSI 593 (596)
Q Consensus 582 ~~~~~~~iy~~l 593 (596)
++++|+++|+++
T Consensus 462 ~a~~~~~~Y~~l 473 (473)
T TIGR02095 462 SAKQYVELYRSL 473 (473)
T ss_pred HHHHHHHHHHhC
Confidence 999999999874
No 5
>PLN02316 synthase/transferase
Probab=100.00 E-value=7.4e-62 Score=544.22 Aligned_cols=445 Identities=45% Similarity=0.785 Sum_probs=369.0
Q ss_pred CCCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEe
Q 043397 105 DSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYH 184 (596)
Q Consensus 105 ~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (596)
...+|||+|||.+++|+.++||++.++..|+++|+++||+|.|++|.|.+.............. ....+ ....++.
T Consensus 584 ~~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~--~~~~~--~~~~v~~ 659 (1036)
T PLN02316 584 KEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRS--YSWGG--TEIKVWF 659 (1036)
T ss_pred CCCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEE--eccCC--EEEEEEE
Confidence 3467999999999999999999999999999999999999999999998764433222221111 11222 3456788
Q ss_pred eeeCCeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCC
Q 043397 185 GVVSSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKK 264 (596)
Q Consensus 185 ~~~~gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~ 264 (596)
...+|+++|++.+...+|.+..+|+. .++..+|.+|+++++++++..+.+|||||+|+|++++++.+++..+......+
T Consensus 660 ~~~~GV~vyfl~~~~~~F~r~~~Yg~-~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~talva~llk~~~~~~~~~~ 738 (1036)
T PLN02316 660 GKVEGLSVYFLEPQNGMFWAGCVYGC-RNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVAWLFKDHYAHYGLSK 738 (1036)
T ss_pred EEECCcEEEEEeccccccCCCCCCCc-hhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHHhhhhhccCC
Confidence 88899999999976567777778863 58899999999999999987778999999999999999998876654334567
Q ss_pred CcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchh
Q 043397 265 PRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWL 344 (596)
Q Consensus 265 ~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l 344 (596)
+|+|+|+|+..+.. +.++.++.++|.|+|+|+++++++...+.
T Consensus 739 ~p~V~TiHnl~~~~------------------------------------n~lk~~l~~AD~ViTVS~tya~EI~~~~~- 781 (1036)
T PLN02316 739 ARVVFTIHNLEFGA------------------------------------NHIGKAMAYADKATTVSPTYSREVSGNSA- 781 (1036)
T ss_pred CCEEEEeCCcccch------------------------------------hHHHHHHHHCCEEEeCCHHHHHHHHhccC-
Confidence 89999999875321 11334567899999999999999875431
Q ss_pred hhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCc-hhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHH
Q 043397 345 ASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKP-EGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHL 423 (596)
Q Consensus 345 ~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~-~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ 423 (596)
+..+..++.+|+||||++.|+|.++.++|..|+.... ++|..++..+++++|++ ..+.++|+|+|||.++||+++
T Consensus 782 ---l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~-~~d~plVg~VGRL~~qKGvdl 857 (1036)
T PLN02316 782 ---IAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLK-QADLPLVGIITRLTHQKGIHL 857 (1036)
T ss_pred ---cccccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCC-cccCeEEEEEeccccccCHHH
Confidence 2233579999999999999999999999999988765 68888999999999996 236799999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCC--CCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHH
Q 043397 424 ITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNK--GTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQM 501 (596)
Q Consensus 424 ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~--~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~l 501 (596)
|++|+.++.+.+++|+|+|+.++..+.+.++++++++++ .++|.|.+.+++...+.+|++||++|+||++|+||+++|
T Consensus 858 Li~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP~GLvqL 937 (1036)
T PLN02316 858 IKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQL 937 (1036)
T ss_pred HHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccCccHHHH
Confidence 999999987778999999981122346788889998865 468999998888777899999999999999999999999
Q ss_pred HHHhcCCceEEeCCCCccccccccCCCCCC-----CccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 043397 502 IGMRYGAVPVVRKTGGLADTVFDVDDPSNH-----EKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIMEND 576 (596)
Q Consensus 502 EAma~G~pvI~s~~gg~~e~i~~~~~~~~~-----~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~ 576 (596)
|||+||+|||++++||++|+|.+++..... .+.|||+|++.|+++|+.+|.++++.+.+.+..+.++++++++++
T Consensus 938 EAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~~d 1017 (1036)
T PLN02316 938 TAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCKRVMEQD 1017 (1036)
T ss_pred HHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 999999999999999999999986432111 136999999999999999999999977656777888999999999
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q 043397 577 NSWNNAAGKYMEIYNSIRV 595 (596)
Q Consensus 577 fs~~~~~~~~~~iy~~l~~ 595 (596)
|||+.++++|+++|+++++
T Consensus 1018 FSW~~~A~~Y~~LY~~a~~ 1036 (1036)
T PLN02316 1018 WSWNRPALDYMELYHSARK 1036 (1036)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999998763
No 6
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=3.2e-60 Score=512.83 Aligned_cols=460 Identities=37% Similarity=0.628 Sum_probs=370.5
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEee--e
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHG--V 186 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 186 (596)
|||+++|++++|+.++||++.++..|+++|+++||+|+|++|.|........ ........ . ...++.. .
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~~-~~~~~~~~------~--~~~~~~~~~~ 71 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKLR-DAQVVGRL------D--LFTVLFGHLE 71 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhhc-CceEEEEe------e--eEEEEEEeEE
Confidence 8999999999999899999999999999999999999999999887643211 11111111 0 1334443 4
Q ss_pred eCCeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCc
Q 043397 187 VSSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPR 266 (596)
Q Consensus 187 ~~gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~p 266 (596)
.+|+++|++++ ..++.+..+|+. .++.+++.+|+++++++++....+|||||+|+|++++++.+++..+ .....++|
T Consensus 72 ~~gv~v~~v~~-~~~~~~~~~y~~-~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~~~~~~l~~~~-~~~~~~~~ 148 (466)
T PRK00654 72 GDGVPVYLIDA-PHLFDRPSGYGY-PDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTGLIPALLKEKY-WRGYPDIK 148 (466)
T ss_pred cCCceEEEEeC-HHHcCCCCCCCC-cChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHHHHHHHHHHHhh-hccCCCCC
Confidence 58999999995 566676777763 2578899999999999998777799999999999999999887654 22245799
Q ss_pred EEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcc---h
Q 043397 267 IVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSG---W 343 (596)
Q Consensus 267 vv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g---~ 343 (596)
+|+|+|+..+++.+....+...+++...+.. ... .....+++++.+++.||.|+|+|+.+++++.... .
T Consensus 149 ~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~g 220 (466)
T PRK00654 149 TVFTIHNLAYQGLFPAEILGELGLPAEAFHL-EGL-------EFYGQISFLKAGLYYADRVTTVSPTYAREITTPEFGYG 220 (466)
T ss_pred EEEEcCCCcCCCcCCHHHHHHcCCChHHcCc-hhh-------hcCCcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcC
Confidence 9999999988776655444444544332211 000 0113467788999999999999999999987431 1
Q ss_pred hhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHH
Q 043397 344 LASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHL 423 (596)
Q Consensus 344 l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ 423 (596)
+...+..+..++.+|+||||.+.|+|.++..++..|+...+++|..++..+++++|++ +++.++|+|+||+.++||++.
T Consensus 221 l~~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~-~~~~~~i~~vGRl~~~KG~~~ 299 (466)
T PRK00654 221 LEGLLRARSGKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLP-DDDAPLFAMVSRLTEQKGLDL 299 (466)
T ss_pred hHHHHHhcccCceEecCCCCccccCCccCcccccccChhhhhchHHHHHHHHHHhCCC-CCCCcEEEEeeccccccChHH
Confidence 3445566778999999999999999998888888898888888888999999999996 236789999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHH
Q 043397 424 ITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIG 503 (596)
Q Consensus 424 ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEA 503 (596)
+++|++++.+++++|+|+|+ +++.+.+.+++++++++. ++.+...++++.+..+|++||++++||.+|+||++++||
T Consensus 300 li~a~~~l~~~~~~lvivG~-g~~~~~~~l~~l~~~~~~--~v~~~~g~~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEA 376 (466)
T PRK00654 300 VLEALPELLEQGGQLVLLGT-GDPELEEAFRALAARYPG--KVGVQIGYDEALAHRIYAGADMFLMPSRFEPCGLTQLYA 376 (466)
T ss_pred HHHHHHHHHhcCCEEEEEec-CcHHHHHHHHHHHHHCCC--cEEEEEeCCHHHHHHHHhhCCEEEeCCCCCCchHHHHHH
Confidence 99999999877899999998 222356788999988863 577665557777889999999999999999999999999
Q ss_pred HhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCHHHHH
Q 043397 504 MRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIMENDNSWNNAA 583 (596)
Q Consensus 504 ma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~ 583 (596)
|+||+|||++++||++|+|.+.+.. .+.++|+++++.|+++|+++|.++++.+. +++.+.+|++++++++|||++++
T Consensus 377 ma~G~p~V~~~~gG~~e~v~~~~~~--~~~~~G~lv~~~d~~~la~~i~~~l~~~~-~~~~~~~~~~~~~~~~fsw~~~a 453 (466)
T PRK00654 377 LRYGTLPIVRRTGGLADTVIDYNPE--DGEATGFVFDDFNAEDLLRALRRALELYR-QPPLWRALQRQAMAQDFSWDKSA 453 (466)
T ss_pred HHCCCCEEEeCCCCccceeecCCCC--CCCCceEEeCCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHHHhccCCChHHHH
Confidence 9999999999999999999873211 12379999999999999999999988664 66779999999888899999999
Q ss_pred HHHHHHHHHHhc
Q 043397 584 GKYMEIYNSIRV 595 (596)
Q Consensus 584 ~~~~~iy~~l~~ 595 (596)
++|+++|++++.
T Consensus 454 ~~~~~lY~~~~~ 465 (466)
T PRK00654 454 EEYLELYRRLLG 465 (466)
T ss_pred HHHHHHHHHHhh
Confidence 999999999864
No 7
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=1.1e-57 Score=496.37 Aligned_cols=469 Identities=38% Similarity=0.647 Sum_probs=383.1
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCC
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSS 189 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (596)
|||++|++++|+.++||+++++..|+++|+++||+|+|++|.|................+.+...+......++....+|
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVDG 80 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeCC
Confidence 79999999999999999999999999999999999999999999887655555555555667778888899999999999
Q ss_pred eEEEEEcCCccccCCCccc----CCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCC
Q 043397 190 IPVIFIEPSNQFFKGKNVY----GGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKP 265 (596)
Q Consensus 190 v~v~~~~~~~~~~~~~~~y----~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (596)
+++++++++ .++.+...| ....++..++..|++++.++++....+|||||+|+|++++++.+++..+....+.++
T Consensus 81 v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~~~~~~l~~~~~~~~~~~~ 159 (476)
T cd03791 81 VPVYFLDNP-DYFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHTGLVPALLKEKYADPFFKNI 159 (476)
T ss_pred ceEEEEcCh-HHcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHHHHHHHHHHHhhccccCCCC
Confidence 999999843 333333322 111267889999999999999877789999999999999988887765432224689
Q ss_pred cEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcc---
Q 043397 266 RIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSG--- 342 (596)
Q Consensus 266 pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g--- 342 (596)
|+|+|+|+..+++.+....+...+........... ...+..+++++.++..||.|+++|+.+++++....
T Consensus 160 ~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~ 232 (476)
T cd03791 160 KTVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDG-------LEFYGQVNFLKAGIVYADAVTTVSPTYAREILTPEFGE 232 (476)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcc-------cccCCcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCc
Confidence 99999999998876665544444333210000000 01235678899999999999999999999987420
Q ss_pred hhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHH
Q 043397 343 WLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLH 422 (596)
Q Consensus 343 ~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~ 422 (596)
.+...+..+..++.+|+||+|.+.|.|..++.++..|+....+.+..++..+++++|++.+++.++|+|+||+.++||++
T Consensus 233 gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~ 312 (476)
T cd03791 233 GLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLFGFVGRLTEQKGID 312 (476)
T ss_pred chHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEEEEEeeccccccHH
Confidence 13344555678999999999999999998888888888777788999999999999996557899999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHH
Q 043397 423 LITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMI 502 (596)
Q Consensus 423 ~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lE 502 (596)
.+++|++++.+.+++|+|+|+ ++..+.+.++++++++ .+++.+++.++++++..+|++||++++||.+|+||++++|
T Consensus 313 ~li~a~~~l~~~~~~lvi~G~-g~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lE 389 (476)
T cd03791 313 LLLEALPELLELGGQLVILGS-GDPEYEEALRELAARY--PGRVAVLIGYDEALAHLIYAGADFFLMPSRFEPCGLTQMY 389 (476)
T ss_pred HHHHHHHHHHHcCcEEEEEec-CCHHHHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHhCCEEECCCCCCCCcHHHHH
Confidence 999999999877799999998 2223456777777765 4579888888888889999999999999999999999999
Q ss_pred HHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCHHHH
Q 043397 503 GMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIMENDNSWNNA 582 (596)
Q Consensus 503 Ama~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~ 582 (596)
||+||+|||++++||+.|+|.++++ ..+.++|+++++.|+++++++|.++++.+. +++.+.++++++++..|||+++
T Consensus 390 Ama~G~pvI~~~~gg~~e~v~~~~~--~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~~~~~~~~~~fsw~~~ 466 (476)
T cd03791 390 AMRYGTVPIVRATGGLADTVIDYNE--DTGEGTGFVFEGYNADALLAALRRALALYR-DPEAWRKLQRNAMAQDFSWDRS 466 (476)
T ss_pred HhhCCCCCEECcCCCccceEeCCcC--CCCCCCeEEeCCCCHHHHHHHHHHHHHHHc-CHHHHHHHHHHHhccCCChHHH
Confidence 9999999999999999999988321 011239999999999999999999998765 6899999999999889999999
Q ss_pred HHHHHHHHHH
Q 043397 583 AGKYMEIYNS 592 (596)
Q Consensus 583 ~~~~~~iy~~ 592 (596)
+++|+++|++
T Consensus 467 a~~~~~~y~~ 476 (476)
T cd03791 467 AKEYLELYRS 476 (476)
T ss_pred HHHHHHHHhC
Confidence 9999999974
No 8
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.5e-56 Score=466.01 Aligned_cols=472 Identities=36% Similarity=0.566 Sum_probs=402.1
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeC
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVS 188 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (596)
|||++++.+..|+.++||++.++..|.++|++.|++|.|+.|.|....+...+..+....+.+...+......+......
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQKEWRDLLKVVGKFGVLKGGRAQLFIVKEYGKD 80 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhhhhccccceeeEeeeeecccceEEEEEeeccc
Confidence 89999999999999999999999999999999999999999999966555444456667777666666555555554433
Q ss_pred -CeEEEEEcCCccccCCC--cccCCChhhHHHHHHHHHHHHHHHHhhC--CCCcEEEEcCCccchHHHHHHHHhhhccCC
Q 043397 189 -SIPVIFIEPSNQFFKGK--NVYGGSYNELEAYLFFSRACLEWMQVTG--VQPDIIHVHEWQIGALPLLYWDMYQSLSLK 263 (596)
Q Consensus 189 -gv~v~~~~~~~~~~~~~--~~y~~~~~~~~~~~~f~~~~~~~l~~~~--~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~ 263 (596)
|++.++++ .+.++.+. ..| +..++.+|+..|++++.+.+.... ..|||||+|+|+++++|.+++..++ ...
T Consensus 81 ~~v~~~lid-~~~~f~r~~~~~~-~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~L~~~~lk~~~~--~~~ 156 (487)
T COG0297 81 GGVDLYLID-NPALFKRPDSTLY-GYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTGLLPAYLKQRYR--SGY 156 (487)
T ss_pred CCCcEEEec-ChhhcCccccccC-CCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHHHHHHHHhhccc--ccc
Confidence 49999999 44555542 222 234889999999999999986554 5899999999999999999887541 146
Q ss_pred CCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhh--c
Q 043397 264 KPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLC--S 341 (596)
Q Consensus 264 ~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~--~ 341 (596)
.+|.|+|+||..+++.++.......+++...|. ..... + ...++++|.++.+||.|+|||+++++++.. .
T Consensus 157 ~i~tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~-~~~l~------~-~~~~~~lK~gi~~ad~vttVSptYa~Ei~t~~~ 228 (487)
T COG0297 157 IIPTVFTIHNLAYQGLFRLQYLEELGLPFEAYA-SFGLE------F-YGQISFLKGGLYYADAVTTVSPTYAGEIYTPEY 228 (487)
T ss_pred cCCeEEEEeeceeecccchhhHHHhcCCHHHhh-hceee------e-cCcchhhhhhheeccEEEEECHHHHHhhccccc
Confidence 899999999999999998666777888876665 22221 1 155789999999999999999999999971 1
Q ss_pred c-hhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCC
Q 043397 342 G-WLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKG 420 (596)
Q Consensus 342 g-~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KG 420 (596)
| .+...+.....+++.|.||+|.+.|+|.+|+.++..|+......|..+|..+++.+|++.+.+.|++.++||+..|||
T Consensus 229 g~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~~~~~pl~~~vsRl~~QKG 308 (487)
T COG0297 229 GEGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDVDLPGPLFGFVSRLTAQKG 308 (487)
T ss_pred cccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCCCCCCCCcEEEEeeccccccc
Confidence 1 134455556689999999999999999999999999999888889999999999999987778899999999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHH
Q 043397 421 LHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQ 500 (596)
Q Consensus 421 i~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~ 500 (596)
+|++++++..+.+..++++|.|. ++....+.+.++++++.. ++.+.-.++.+..+.+|+.||++++||++||||++.
T Consensus 309 ~dl~~~~i~~~l~~~~~~vilG~-gd~~le~~~~~la~~~~~--~~~~~i~~~~~la~~i~agaD~~lmPSrfEPcGL~q 385 (487)
T COG0297 309 LDLLLEAIDELLEQGWQLVLLGT-GDPELEEALRALASRHPG--RVLVVIGYDEPLAHLIYAGADVILMPSRFEPCGLTQ 385 (487)
T ss_pred hhHHHHHHHHHHHhCceEEEEec-CcHHHHHHHHHHHHhcCc--eEEEEeeecHHHHHHHHhcCCEEEeCCcCcCCcHHH
Confidence 99999999999988899999999 345677888888888764 688888999999999999999999999999999999
Q ss_pred HHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCHH
Q 043397 501 MIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIMENDNSWN 580 (596)
Q Consensus 501 lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~ 580 (596)
++||++|++||++.+||++|+|.+.+.+...+.++|+++.+.|+++|+.+|.+++..+...+..|+.+.++++..+|+|+
T Consensus 386 l~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~~~~~w~~~~~~~m~~d~sw~ 465 (487)
T COG0297 386 LYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRAPPLLWRKVQPNAMGADFSWD 465 (487)
T ss_pred HHHHHcCCcceEcccCCccceecCccchhccCceeEEEEecCCHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcccccCch
Confidence 99999999999999999999999876644556789999999999999999999999998777779999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 043397 581 NAAGKYMEIYNSIRV 595 (596)
Q Consensus 581 ~~~~~~~~iy~~l~~ 595 (596)
+.+++|.++|+.++.
T Consensus 466 ~sa~~y~~lY~~~~~ 480 (487)
T COG0297 466 LSAKEYVELYKPLLS 480 (487)
T ss_pred hHHHHHHHHHHHHhc
Confidence 999999999999864
No 9
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=2.4e-42 Score=368.28 Aligned_cols=388 Identities=20% Similarity=0.220 Sum_probs=284.0
Q ss_pred EEEEeecccccc-----cccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEee
Q 043397 111 IIHITAEMAPIA-----KVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHG 185 (596)
Q Consensus 111 Il~is~~~~P~~-----~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (596)
|++++....|.. ..||.++++.+|+++|.++||+|+|+|+......... ..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~------------------------~~ 56 (405)
T TIGR03449 1 VAMISMHTSPLQQPGTGDAGGMNVYILETATELARRGIEVDIFTRATRPSQPPV------------------------VE 56 (405)
T ss_pred CeEEeccCCccccCCCcCCCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCc------------------------cc
Confidence 466777776642 2599999999999999999999999996533211000 01
Q ss_pred eeCCeEEEEEcCCccccCCCcccCCChhhHH-HHHHHHHHHH-HHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCC
Q 043397 186 VVSSIPVIFIEPSNQFFKGKNVYGGSYNELE-AYLFFSRACL-EWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLK 263 (596)
Q Consensus 186 ~~~gv~v~~~~~~~~~~~~~~~y~~~~~~~~-~~~~f~~~~~-~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~ 263 (596)
..+|+.++.++....... ....+. .+..|..... .+++....+|||||+|.+..+.++.+++. ..
T Consensus 57 ~~~~~~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diih~h~~~~~~~~~~~~~------~~ 123 (405)
T TIGR03449 57 VAPGVRVRNVVAGPYEGL-------DKEDLPTQLCAFTGGVLRAEARHEPGYYDLIHSHYWLSGQVGWLLRD------RW 123 (405)
T ss_pred cCCCcEEEEecCCCcccC-------CHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEechHHHHHHHHHHHH------hc
Confidence 136777777652111000 001111 1112333333 34443346899999998766555554433 35
Q ss_pred CCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcch
Q 043397 264 KPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGW 343 (596)
Q Consensus 264 ~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~ 343 (596)
++|+|+|+|+.... ....+......... ......+..++.+|.++++|+...+.+..
T Consensus 124 ~~p~v~t~h~~~~~---~~~~~~~~~~~~~~-----------------~~~~~e~~~~~~~d~vi~~s~~~~~~~~~--- 180 (405)
T TIGR03449 124 GVPLVHTAHTLAAV---KNAALADGDTPEPE-----------------ARRIGEQQLVDNADRLIANTDEEARDLVR--- 180 (405)
T ss_pred CCCEEEeccchHHH---HHHhccCCCCCchH-----------------HHHHHHHHHHHhcCeEEECCHHHHHHHHH---
Confidence 78999999976421 00000000000000 00112234567799999999988887543
Q ss_pred hhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHH
Q 043397 344 LASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHL 423 (596)
Q Consensus 344 l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ 423 (596)
.++.+..++.+||||+|.+.|.+.. +...+++++++ +++++|+|+||+.+.||++.
T Consensus 181 ---~~~~~~~ki~vi~ngvd~~~~~~~~-------------------~~~~~~~~~~~--~~~~~i~~~G~l~~~K~~~~ 236 (405)
T TIGR03449 181 ---HYDADPDRIDVVAPGADLERFRPGD-------------------RATERARLGLP--LDTKVVAFVGRIQPLKAPDV 236 (405)
T ss_pred ---HcCCChhhEEEECCCcCHHHcCCCc-------------------HHHHHHhcCCC--CCCcEEEEecCCCcccCHHH
Confidence 2334567899999999988776541 23455677775 67889999999999999999
Q ss_pred HHHHHHHHHH--cC--CEEEEEecC-CCC-cchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCc
Q 043397 424 ITHAIKRAEE--LG--GQMILLGNS-PVH-WVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCG 497 (596)
Q Consensus 424 ll~A~~~l~~--~~--~~lvIvG~~-~~g-~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~g 497 (596)
+++|++++.+ ++ ++|+|+|+. .+| +..+.++++++++++.++|+|+|.++.+++..+|+.||++++||..|++|
T Consensus 237 li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g 316 (405)
T TIGR03449 237 LLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFG 316 (405)
T ss_pred HHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcC
Confidence 9999999865 44 899999962 124 56788999999999988999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--h
Q 043397 498 LAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME--N 575 (596)
Q Consensus 498 l~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~--~ 575 (596)
++++|||++|+|||+++.||..|++.+ +.+|++++++|+++++++|.++++ +++.+.+|+.++.+ +
T Consensus 317 ~~~lEAma~G~Pvi~~~~~~~~e~i~~--------~~~g~~~~~~d~~~la~~i~~~l~----~~~~~~~~~~~~~~~~~ 384 (405)
T TIGR03449 317 LVAMEAQACGTPVVAARVGGLPVAVAD--------GETGLLVDGHDPADWADALARLLD----DPRTRIRMGAAAVEHAA 384 (405)
T ss_pred hHHHHHHHcCCCEEEecCCCcHhhhcc--------CCceEECCCCCHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988 789999999999999999999998 88888888866554 6
Q ss_pred cCCHHHHHHHHHHHHHHHh
Q 043397 576 DNSWNNAAGKYMEIYNSIR 594 (596)
Q Consensus 576 ~fs~~~~~~~~~~iy~~l~ 594 (596)
+|||+.++++|+++|++++
T Consensus 385 ~fsw~~~~~~~~~~y~~~~ 403 (405)
T TIGR03449 385 GFSWAATADGLLSSYRDAL 403 (405)
T ss_pred hCCHHHHHHHHHHHHHHHh
Confidence 8999999999999999875
No 10
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=3.4e-42 Score=369.89 Aligned_cols=392 Identities=18% Similarity=0.220 Sum_probs=268.2
Q ss_pred cccCHHHHHhHHHHHHHhcCC--eEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCCeEEEEEcCCcc
Q 043397 123 KVGGLGDVVTGLARACLSRGH--TVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSSIPVIFIEPSNQ 200 (596)
Q Consensus 123 ~~GG~~~~~~~La~aL~~~Gh--~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~~ 200 (596)
..||+++++.+|+++|+++|| +|+|+|..++...... +. .. .+....+|+++++++....
T Consensus 24 ~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~--~~----------~~------~~~~~~~gv~v~r~~~~~~ 85 (439)
T TIGR02472 24 DTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSP--DY----------AQ------PIERIAPGARIVRLPFGPR 85 (439)
T ss_pred CCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCC--cc----------CC------CeeEeCCCcEEEEecCCCC
Confidence 679999999999999999997 9999996533210000 00 00 0112247899988863111
Q ss_pred ccCCCcccCCChhhHHH-HHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCc
Q 043397 201 FFKGKNVYGGSYNELEA-YLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGE 279 (596)
Q Consensus 201 ~~~~~~~y~~~~~~~~~-~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~ 279 (596)
. +.. ...... ...+...+.++++....+|||||+|++..+.++.++.. ..++|+|+|.|+.....
T Consensus 86 ~------~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~~~------~~~~p~V~t~H~~~~~~- 151 (439)
T TIGR02472 86 R------YLR-KELLWPYLDELADNLLQHLRQQGHLPDLIHAHYADAGYVGARLSR------LLGVPLIFTGHSLGREK- 151 (439)
T ss_pred C------CcC-hhhhhhhHHHHHHHHHHHHHHcCCCCCEEEEcchhHHHHHHHHHH------HhCCCEEEecccccchh-
Confidence 1 100 011111 23455566666654445799999998776666555443 25789999999754210
Q ss_pred chhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEee
Q 043397 280 CRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGIL 359 (596)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~ 359 (596)
...+...+.....+. +.+ ....+....+..++.+|.|+++|+....+... .....+.+++.+||
T Consensus 152 --~~~~~~~~~~~~~~~---~~~------~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~-----~~~~~~~~ki~vIp 215 (439)
T TIGR02472 152 --RRRLLAAGLKPQQIE---KQY------NISRRIEAEEETLAHASLVITSTHQEIEEQYA-----LYDSYQPERMQVIP 215 (439)
T ss_pred --hhhcccCCCChhhhh---hhc------chHHHHHHHHHHHHhCCEEEECCHHHHHHHHH-----hccCCCccceEEEC
Confidence 000000011111000 000 00122334566788899999999754443221 11134567999999
Q ss_pred CCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHH--HcCCE
Q 043397 360 NGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAE--ELGGQ 437 (596)
Q Consensus 360 nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~--~~~~~ 437 (596)
||+|.+.|.|..... .....+..++ .++.. ++.++|+|+||+.+.||++.+++|++++. +...+
T Consensus 216 nGvd~~~f~~~~~~~-----------~~~~~~~~~~-~~~~~--~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~~~ 281 (439)
T TIGR02472 216 PGVDLSRFYPPQSSE-----------ETSEIDNLLA-PFLKD--PEKPPILAISRPDRRKNIPSLVEAYGRSPKLQEMAN 281 (439)
T ss_pred CCcChhhcCCCCccc-----------cchhHHHHHH-hhccc--cCCcEEEEEcCCcccCCHHHHHHHHHhChhhhhhcc
Confidence 999999887652110 0001112222 23333 56789999999999999999999998642 22345
Q ss_pred EE-EEecCCCCcc-----------hHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhC----CEEEEcCCCCCCchHHH
Q 043397 438 MI-LLGNSPVHWV-----------QKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAA----DIVLVPSIYEPCGLAQM 501 (596)
Q Consensus 438 lv-IvG~~~~g~~-----------~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~a----Di~l~PS~~E~~gl~~l 501 (596)
++ |+|+ |+. .+.+..+++++++.++|+|.|.++.+++..+|+.| |++++||.+|+||++++
T Consensus 282 l~li~G~---g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~l 358 (439)
T TIGR02472 282 LVLVLGC---RDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLL 358 (439)
T ss_pred EEEEeCC---ccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHH
Confidence 54 5676 432 12345567888999999999999999999999987 99999999999999999
Q ss_pred HHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH---hcCC
Q 043397 502 IGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME---NDNS 578 (596)
Q Consensus 502 EAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~---~~fs 578 (596)
||||||+|||+|+.||++|++.+ +.+|++++++|+++|+++|.++++ |++.+++|++++.+ ++||
T Consensus 359 EAma~G~PvV~s~~gg~~eiv~~--------~~~G~lv~~~d~~~la~~i~~ll~----~~~~~~~~~~~a~~~~~~~fs 426 (439)
T TIGR02472 359 EAAACGLPIVATDDGGPRDIIAN--------CRNGLLVDVLDLEAIASALEDALS----DSSQWQLWSRNGIEGVRRHYS 426 (439)
T ss_pred HHHHhCCCEEEeCCCCcHHHhcC--------CCcEEEeCCCCHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999988 789999999999999999999998 99999999876643 7899
Q ss_pred HHHHHHHHHHHHH
Q 043397 579 WNNAAGKYMEIYN 591 (596)
Q Consensus 579 ~~~~~~~~~~iy~ 591 (596)
|+.++++|+++++
T Consensus 427 w~~~~~~~~~l~~ 439 (439)
T TIGR02472 427 WDAHVEKYLRILQ 439 (439)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999864
No 11
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=4.8e-42 Score=366.68 Aligned_cols=393 Identities=17% Similarity=0.119 Sum_probs=284.8
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccc--cchhhhh-hcccceeeeEEeecCCceEEEEEEee
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFY--ECIQKQE-ISDLALITTYNSYHDGNWVATNAYHG 185 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (596)
|||++++..|+| ..||.+.++.+|+++|.++||+|+|+|+.. +...... .... .....
T Consensus 1 mkIlii~~~~~P--~~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~~~~~~-----------------~~~~~ 61 (412)
T PRK10307 1 MKILVYGINYAP--ELTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVGEGYSAW-----------------RYRRE 61 (412)
T ss_pred CeEEEEecCCCC--CccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCCcccccc-----------------cceee
Confidence 899999999988 469999999999999999999999999642 1110000 0000 00011
Q ss_pred eeCCeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHH-HHhhCCCCcEEEEcCCccc--hHHHHHHHHhhhccC
Q 043397 186 VVSSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEW-MQVTGVQPDIIHVHEWQIG--ALPLLYWDMYQSLSL 262 (596)
Q Consensus 186 ~~~gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~-l~~~~~~pDVIh~~~~~~~--~~~~~~~~~~~~~~~ 262 (596)
..+|+++++++... ... .........+..|....... ++....+|||||+|++... ..+.++.+ .
T Consensus 62 ~~~~i~v~r~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~~~~~~~------~ 129 (412)
T PRK10307 62 SEGGVTVWRCPLYV--PKQ----PSGLKRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPGARLLAR------L 129 (412)
T ss_pred ecCCeEEEEccccC--CCC----ccHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHHHHHHHH------h
Confidence 24688888876210 000 00111122222233332222 2322368999999975432 22223322 3
Q ss_pred CCCcEEEEEcCCCCCCcchhhhhhhcCCC-chhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhc
Q 043397 263 KKPRIVLTIHNMEHYGECRQEQLSKCGLD-GSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCS 341 (596)
Q Consensus 263 ~~~pvv~tiH~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~ 341 (596)
.++|+++++|+.++..... .+.. ...+... ...+.+..++.+|.|+++|+...+.+...
T Consensus 130 ~~~~~v~~~~d~~~~~~~~------~~~~~~~~~~~~--------------~~~~~~~~~~~ad~ii~~S~~~~~~~~~~ 189 (412)
T PRK10307 130 SGARTWLHIQDYEVDAAFG------LGLLKGGKVARL--------------ATAFERSLLRRFDNVSTISRSMMNKAREK 189 (412)
T ss_pred hCCCEEEEeccCCHHHHHH------hCCccCcHHHHH--------------HHHHHHHHHhhCCEEEecCHHHHHHHHHc
Confidence 5789999999876421110 1111 1111110 01235556778999999999999886543
Q ss_pred chhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCH
Q 043397 342 GWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGL 421 (596)
Q Consensus 342 g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi 421 (596)
+ .+..++.+||||+|.+.|.+.... ....++++++++ ++.++++|+||+.+.||+
T Consensus 190 ~-------~~~~~i~vi~ngvd~~~~~~~~~~----------------~~~~~~~~~~~~--~~~~~i~~~G~l~~~kg~ 244 (412)
T PRK10307 190 G-------VAAEKVIFFPNWSEVARFQPVADA----------------DVDALRAQLGLP--DGKKIVLYSGNIGEKQGL 244 (412)
T ss_pred C-------CCcccEEEECCCcCHhhcCCCCcc----------------chHHHHHHcCCC--CCCEEEEEcCccccccCH
Confidence 3 456789999999998877654211 123466778875 667899999999999999
Q ss_pred HHHHHHHHHHHH-cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCC----C
Q 043397 422 HLITHAIKRAEE-LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEP----C 496 (596)
Q Consensus 422 ~~ll~A~~~l~~-~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~----~ 496 (596)
+.|++|++++.+ ++++|+|+|+ |+..+.++++++++++. +|+|+|+++.+++..+|++||++++||..|+ +
T Consensus 245 ~~li~a~~~l~~~~~~~l~ivG~---g~~~~~l~~~~~~~~l~-~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~ 320 (412)
T PRK10307 245 ELVIDAARRLRDRPDLIFVICGQ---GGGKARLEKMAQCRGLP-NVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVL 320 (412)
T ss_pred HHHHHHHHHhccCCCeEEEEECC---ChhHHHHHHHHHHcCCC-ceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccC
Confidence 999999998855 5799999999 98889999999999886 7999999999999999999999999999988 5
Q ss_pred chHHHHHHhcCCceEEeCCCC--ccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043397 497 GLAQMIGMRYGAVPVVRKTGG--LADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME 574 (596)
Q Consensus 497 gl~~lEAma~G~pvI~s~~gg--~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~ 574 (596)
|.+++|||+||+|||+++.|| +.+++. ++|++++++|+++|+++|.++++ |++.+.+|++++.+
T Consensus 321 p~kl~eama~G~PVi~s~~~g~~~~~~i~----------~~G~~~~~~d~~~la~~i~~l~~----~~~~~~~~~~~a~~ 386 (412)
T PRK10307 321 PSKLTNMLASGRNVVATAEPGTELGQLVE----------GIGVCVEPESVEALVAAIAALAR----QALLRPKLGTVARE 386 (412)
T ss_pred cHHHHHHHHcCCCEEEEeCCCchHHHHHh----------CCcEEeCCCCHHHHHHHHHHHHh----CHHHHHHHHHHHHH
Confidence 777899999999999999887 457774 38999999999999999999998 89999999876654
Q ss_pred ---hcCCHHHHHHHHHHHHHHHhc
Q 043397 575 ---NDNSWNNAAGKYMEIYNSIRV 595 (596)
Q Consensus 575 ---~~fs~~~~~~~~~~iy~~l~~ 595 (596)
++|||+.++++|+++|++++.
T Consensus 387 ~~~~~fs~~~~~~~~~~~~~~~~~ 410 (412)
T PRK10307 387 YAERTLDKENVLRQFIADIRGLVA 410 (412)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHhc
Confidence 689999999999999999864
No 12
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=2.2e-41 Score=378.38 Aligned_cols=444 Identities=18% Similarity=0.137 Sum_probs=296.4
Q ss_pred CCCceeEEEEeecccc---------cccccCHHHHHhHHHHHHHhcC--CeEEEEeccccchhhhhhcccceeeeEEeec
Q 043397 105 DSNLMHIIHITAEMAP---------IAKVGGLGDVVTGLARACLSRG--HTVDIMLPFYECIQKQEISDLALITTYNSYH 173 (596)
Q Consensus 105 ~~~~mkIl~is~~~~P---------~~~~GG~~~~~~~La~aL~~~G--h~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~ 173 (596)
..++|.|++|+..-.+ ...+||...|+.+||++|+++| |+|+|+|.....-. + +..+.......-
T Consensus 166 ~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~---~-~~~y~~p~e~~~ 241 (1050)
T TIGR02468 166 KEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPD---V-DWSYGEPTEMLT 241 (1050)
T ss_pred ccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccc---c-ccccCCcccccc
Confidence 4567999999876643 2357999999999999999998 89999995432210 0 000000000000
Q ss_pred CCceEEEEEEeeeeCCeEEEEEcCCc--cccCCCcccCCChhhHH-HHHHHHHHHHHHHHh------------hCCCCcE
Q 043397 174 DGNWVATNAYHGVVSSIPVIFIEPSN--QFFKGKNVYGGSYNELE-AYLFFSRACLEWMQV------------TGVQPDI 238 (596)
Q Consensus 174 ~~~~~~~~~~~~~~~gv~v~~~~~~~--~~~~~~~~y~~~~~~~~-~~~~f~~~~~~~l~~------------~~~~pDV 238 (596)
....-..........|+.+++++... .+..+ ..+. ...-|...+..++.. ....|||
T Consensus 242 ~~~~~~~~~~~~~~~g~rIvRip~GP~~~~l~K--------e~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDv 313 (1050)
T TIGR02468 242 PRSSENDGDEMGESSGAYIIRIPFGPRDKYIPK--------EELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYV 313 (1050)
T ss_pred ccccccccccccCCCCeEEEEeccCCCCCCcCH--------HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCE
Confidence 00000000011124689999988421 12222 2222 223355555554432 1124999
Q ss_pred EEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCC-CchhhhhhhhhccccccCCCcccchhh
Q 043397 239 IHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGL-DGSIYASVEKAIDDRTIGHNPERLSLL 317 (596)
Q Consensus 239 Ih~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (596)
||+|.|.++.++..+... .++|+|+|.|..... ....+...|. .... +...+ ..+.+....
T Consensus 314 IHaHyw~sG~aa~~L~~~------lgVP~V~T~HSLgr~---K~~~ll~~g~~~~~~---~~~~y------~~~~Ri~~E 375 (1050)
T TIGR02468 314 IHGHYADAGDSAALLSGA------LNVPMVLTGHSLGRD---KLEQLLKQGRMSKEE---INSTY------KIMRRIEAE 375 (1050)
T ss_pred EEECcchHHHHHHHHHHh------hCCCEEEECccchhh---hhhhhcccccccccc---ccccc------chHHHHHHH
Confidence 999999999988887653 689999999976311 1000111111 0000 00000 012455667
Q ss_pred chhccccCeEEEeChhhHHHHhhcc-hhh---------------hhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCC
Q 043397 318 KGGIVYSNAVVTVSPTYLKETLCSG-WLA---------------SVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHA 381 (596)
Q Consensus 318 ~~~~~~ad~vi~vS~~~~~~~~~~g-~l~---------------~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~ 381 (596)
+.++..||.|||+|+..++++.... .+. ..++....++.|||||+|++.|.|.....-......
T Consensus 376 e~~l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~ 455 (1050)
T TIGR02468 376 ELSLDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGN 455 (1050)
T ss_pred HHHHHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhccc
Confidence 8889999999999999888754321 000 001122359999999999999987532100000000
Q ss_pred --CCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHH----cCCEEEEEecCC--------CC
Q 043397 382 --QKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE----LGGQMILLGNSP--------VH 447 (596)
Q Consensus 382 --~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~----~~~~lvIvG~~~--------~g 447 (596)
............+++.+. . +++++|+|+||+.++||++.||+|+..+.+ +++. +|+|+.. .+
T Consensus 456 ~~~~~~~~~~~~~~l~r~~~-~--pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~gdd~d~l~~~~~ 531 (1050)
T TIGR02468 456 EEHPAKPDPPIWSEIMRFFT-N--PRKPMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDDIDEMSSGSS 531 (1050)
T ss_pred ccccccccchhhHHHHhhcc-c--CCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecCchhhhhhccch
Confidence 000000000112333332 2 788999999999999999999999999864 2444 4667611 01
Q ss_pred cchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhC----CEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCcccccc
Q 043397 448 WVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAA----DIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVF 523 (596)
Q Consensus 448 ~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~a----Di~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~ 523 (596)
.+...++++++++++.++|.|+|+++.+++..+|+.| |+||+||.+|+||++++||||||+|||+|++||+.|+|.
T Consensus 532 ~~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG~~EII~ 611 (1050)
T TIGR02468 532 SVLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIHR 611 (1050)
T ss_pred HHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCCcHHHhc
Confidence 2345678889999999999999999999999999988 699999999999999999999999999999999999998
Q ss_pred ccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHh
Q 043397 524 DVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME--NDNSWNNAAGKYMEIYNSIR 594 (596)
Q Consensus 524 ~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~iy~~l~ 594 (596)
+ +.+|+++++.|+++|+++|.++++ |++++++|++++.+ .+|+|+.++++|++.|..+.
T Consensus 612 ~--------g~nGlLVdP~D~eaLA~AL~~LL~----Dpelr~~m~~~gr~~v~~FSWe~ia~~yl~~i~~~~ 672 (1050)
T TIGR02468 612 V--------LDNGLLVDPHDQQAIADALLKLVA----DKQLWAECRQNGLKNIHLFSWPEHCKTYLSRIASCR 672 (1050)
T ss_pred c--------CCcEEEECCCCHHHHHHHHHHHhh----CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHh
Confidence 8 789999999999999999999998 99999999977665 67999999999999998764
No 13
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=2.4e-41 Score=359.40 Aligned_cols=364 Identities=18% Similarity=0.197 Sum_probs=266.3
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCC
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSS 189 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (596)
||++++..+.| ..||.++++..|+++|.++||+|+|+|+.++..... ....+|
T Consensus 1 kI~~v~~~~~p--~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~-------------------------~~~~~~ 53 (398)
T cd03796 1 RICMVSDFFYP--NLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGI-------------------------RYLTNG 53 (398)
T ss_pred CeeEEeecccc--ccccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCc-------------------------ccccCc
Confidence 79999999988 579999999999999999999999999653321000 001256
Q ss_pred eEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHH-HHHHHhhhccCCCCcEE
Q 043397 190 IPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPL-LYWDMYQSLSLKKPRIV 268 (596)
Q Consensus 190 v~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~-~~~~~~~~~~~~~~pvv 268 (596)
++++.++... .... .... .+..+...+...+. ..+|||||+|++....... ++.. +..++|+|
T Consensus 54 i~v~~~p~~~-~~~~-~~~~-------~~~~~~~~l~~~~~--~~~~DiIh~~~~~~~~~~~~~~~~-----~~~~~~~v 117 (398)
T cd03796 54 LKVYYLPFVV-FYNQ-STLP-------TFFGTFPLLRNILI--RERITIVHGHQAFSALAHEALLHA-----RTMGLKTV 117 (398)
T ss_pred eeEEEeccee-ccCC-cccc-------chhhhHHHHHHHHH--hcCCCEEEECCCCchHHHHHHHHh-----hhcCCcEE
Confidence 7777665211 1110 0000 01112223333333 3689999999866543321 1111 14579999
Q ss_pred EEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhh
Q 043397 269 LTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVL 348 (596)
Q Consensus 269 ~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~ 348 (596)
+|.|+........ .... ..+.+..++.+|.++++|+...+.+... .
T Consensus 118 ~t~h~~~~~~~~~----------~~~~------------------~~~~~~~~~~~d~ii~~s~~~~~~~~~~------~ 163 (398)
T cd03796 118 FTDHSLFGFADAS----------SIHT------------------NKLLRFSLADVDHVICVSHTSKENTVLR------A 163 (398)
T ss_pred EEecccccccchh----------hHHh------------------hHHHHHhhccCCEEEEecHhHhhHHHHH------h
Confidence 9999764211000 0000 0122334667999999999887764311 1
Q ss_pred hccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHH
Q 043397 349 ITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAI 428 (596)
Q Consensus 349 ~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~ 428 (596)
..+..++.+||||+|.+.|.+..+. . +++.++++|+||+.++||++.+++|+
T Consensus 164 ~~~~~k~~vi~ngvd~~~f~~~~~~--------------------------~--~~~~~~i~~~grl~~~Kg~~~li~a~ 215 (398)
T cd03796 164 SLDPERVSVIPNAVDSSDFTPDPSK--------------------------R--DNDKITIVVISRLVYRKGIDLLVGII 215 (398)
T ss_pred CCChhhEEEEcCccCHHHcCCCccc--------------------------C--CCCceEEEEEeccchhcCHHHHHHHH
Confidence 2346789999999998877654211 0 15678999999999999999999999
Q ss_pred HHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhc
Q 043397 429 KRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRY 506 (596)
Q Consensus 429 ~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~ 506 (596)
+.+.+ ++++|+|+|+ |+..+.++++++++++.++|.|+|.++++++..+|++||++++||..|+||++++|||+|
T Consensus 216 ~~l~~~~~~~~l~i~G~---g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~ 292 (398)
T cd03796 216 PEICKKHPNVRFIIGGD---GPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASC 292 (398)
T ss_pred HHHHhhCCCEEEEEEeC---CchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHc
Confidence 98865 6899999999 888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHH---HHHHHhcCCHHHHH
Q 043397 507 GAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIV---QKIMENDNSWNNAA 583 (596)
Q Consensus 507 G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~---~~~~~~~fs~~~~~ 583 (596)
|+|||+++.||.+|++.+ +.++++.+ |+++++++|.++++ +......+. ++.++++|||+.++
T Consensus 293 G~PVI~s~~gg~~e~i~~---------~~~~~~~~-~~~~l~~~l~~~l~----~~~~~~~~~~~~~~~~~~~fs~~~~~ 358 (398)
T cd03796 293 GLLVVSTRVGGIPEVLPP---------DMILLAEP-DVESIVRKLEEAIS----ILRTGKHDPWSFHNRVKKMYSWEDVA 358 (398)
T ss_pred CCCEEECCCCCchhheeC---------CceeecCC-CHHHHHHHHHHHHh----ChhhhhhHHHHHHHHHHhhCCHHHHH
Confidence 999999999999999977 34555544 89999999999998 433332332 34455799999999
Q ss_pred HHHHHHHHHHhc
Q 043397 584 GKYMEIYNSIRV 595 (596)
Q Consensus 584 ~~~~~iy~~l~~ 595 (596)
++|+++|++++.
T Consensus 359 ~~~~~~y~~l~~ 370 (398)
T cd03796 359 KRTEKVYDRILQ 370 (398)
T ss_pred HHHHHHHHHHhc
Confidence 999999999864
No 14
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=100.00 E-value=7.3e-41 Score=367.88 Aligned_cols=437 Identities=13% Similarity=0.090 Sum_probs=287.8
Q ss_pred CceeEEEEeeccc----cc---ccccCHHHHHhHHHHHH--------HhcCC----eEEEEeccccchhhhhhcccceee
Q 043397 107 NLMHIIHITAEMA----PI---AKVGGLGDVVTGLARAC--------LSRGH----TVDIMLPFYECIQKQEISDLALIT 167 (596)
Q Consensus 107 ~~mkIl~is~~~~----P~---~~~GG~~~~~~~La~aL--------~~~Gh----~V~vi~p~~~~~~~~~~~~~~~~~ 167 (596)
..|||+++|...+ |. ..+||...++.++|++| +++|| +|+|+|...+......
T Consensus 254 ~~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~-------- 325 (784)
T TIGR02470 254 MVFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTT-------- 325 (784)
T ss_pred ccceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccccc--------
Confidence 4489999999882 21 13699999999999985 68999 7779995432110000
Q ss_pred eEEeecCCceEEEEEEeeeeCCeEEEEEcCCccccCCCcccCCChhhHHH-HHHHHHHHHHHHH-hhCCCCcEEEEcCCc
Q 043397 168 TYNSYHDGNWVATNAYHGVVSSIPVIFIEPSNQFFKGKNVYGGSYNELEA-YLFFSRACLEWMQ-VTGVQPDIIHVHEWQ 245 (596)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~y~~~~~~~~~-~~~f~~~~~~~l~-~~~~~pDVIh~~~~~ 245 (596)
+..+.. ......|+.+++++....-..--.-|.. ..++.. ...|...+.+.+. ..+.+||+||+|.|.
T Consensus 326 -~~~~~e--------~~~~~~~~~I~rvp~g~~~~~~~~~~i~-k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d 395 (784)
T TIGR02470 326 -CNQRLE--------KVYGTEHAWILRVPFRTENGIILRNWIS-RFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSD 395 (784)
T ss_pred -cccccc--------cccCCCceEEEEecCCCCcccccccccC-HHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 000000 0011357788887732110000000111 122222 2346666665444 335689999999999
Q ss_pred cchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccC
Q 043397 246 IGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSN 325 (596)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 325 (596)
+++++.++... .++|.++|.|........ ..+..+. ..+..+ +...++.....++..||
T Consensus 396 ~glva~lla~~------lgVP~v~t~HsL~~~K~~------~~g~~~~---~~e~~~------~~~~r~~ae~~~~~~AD 454 (784)
T TIGR02470 396 GNLVASLLARK------LGVTQCTIAHALEKTKYP------DSDIYWQ---EFEDKY------HFSCQFTADLIAMNAAD 454 (784)
T ss_pred hHHHHHHHHHh------cCCCEEEECCcchhhccc------ccccccc---cchhHH------HhhhhhhHHHHHHhcCC
Confidence 99988776653 689999999977431110 0011110 000000 00112233456788899
Q ss_pred eEEEeChhhHH----HHhhcch-----hhhhhh------ccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhh
Q 043397 326 AVVTVSPTYLK----ETLCSGW-----LASVLI------THRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKIC 390 (596)
Q Consensus 326 ~vi~vS~~~~~----~~~~~g~-----l~~~~~------~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~ 390 (596)
.|||.|..... .+.+++- +...++ .+..|+.+||+|+|...|.|.++......-....++...-+
T Consensus 455 ~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~ 534 (784)
T TIGR02470 455 FIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFS 534 (784)
T ss_pred EEEECcHHHhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccc
Confidence 99999974422 1111110 001111 24579999999999998877543210000000001111113
Q ss_pred HHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHH--cCCEEEEEecCCCC------c---chHHHHHHHHH
Q 043397 391 KYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--LGGQMILLGNSPVH------W---VQKDFEDLANL 459 (596)
Q Consensus 391 k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~~~~lvIvG~~~~g------~---~~~~l~~~~~~ 459 (596)
+...++.+|+..++++++|+++||++++||++.+++|+.++.+ ++++|+|+|+..++ . +.+.+.+++++
T Consensus 535 ~~~~~~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~ 614 (784)
T TIGR02470 535 LEDNDEHYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQ 614 (784)
T ss_pred hhhHHHHhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHH
Confidence 4455677787545788999999999999999999999987743 46899999972110 1 23467778999
Q ss_pred cCCCCcEEEEecc-CHHHHHHHHH----hCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCcc
Q 043397 460 HNKGTSTRILLMY-SEELSHMLYA----AADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKA 534 (596)
Q Consensus 460 ~~~~~~V~~~g~~-~~~~l~~~~a----~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~ 534 (596)
+++.++|+|+|.. +..+..++|+ ++|++++||.+|+||++++||||||+|||+|++||+.|+|.+ +.
T Consensus 615 ~gL~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG~~EiV~d--------g~ 686 (784)
T TIGR02470 615 YQLHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGGPLEIIQD--------GV 686 (784)
T ss_pred hCCCCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcC--------CC
Confidence 9999999999975 5445555554 358999999999999999999999999999999999999998 78
Q ss_pred ceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHH
Q 043397 535 NGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME---NDNSWNNAAGKYMEIY 590 (596)
Q Consensus 535 ~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~iy 590 (596)
+|+++++.|+++++++|.++++....|++.|++|++++++ ++|||+.++++++++.
T Consensus 687 tGfLVdp~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~~ll~l~ 745 (784)
T TIGR02470 687 SGFHIDPYHGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKIYSERLLTLA 745 (784)
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999999885444599999999987765 7899999999999875
No 15
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=9.8e-41 Score=361.39 Aligned_cols=377 Identities=20% Similarity=0.224 Sum_probs=269.2
Q ss_pred CCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEee
Q 043397 106 SNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHG 185 (596)
Q Consensus 106 ~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (596)
+++|||++++... |....||.+.++.+++++|.++||+|+|+|+..... . .
T Consensus 56 ~~~mrI~~~~~~~-~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~-~-~-------------------------- 106 (465)
T PLN02871 56 SRPRRIALFVEPS-PFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVP-Q-E-------------------------- 106 (465)
T ss_pred CCCceEEEEECCc-CCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCC-c-c--------------------------
Confidence 6789999997544 333679999999999999999999999999653211 0 0
Q ss_pred eeCCeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHH-HHHHHhhhccCCC
Q 043397 186 VVSSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPL-LYWDMYQSLSLKK 264 (596)
Q Consensus 186 ~~~gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~-~~~~~~~~~~~~~ 264 (596)
..|+.++.+......+.....+. + .+...+.+.++. .+|||||+|+......+. ++.. ..+
T Consensus 107 -~~g~~v~~~~~~~~~~~~~~~~~--------~-~~~~~l~~~i~~--~kpDiIh~~~~~~~~~~~~~~ak------~~~ 168 (465)
T PLN02871 107 -FHGAKVIGSWSFPCPFYQKVPLS--------L-ALSPRIISEVAR--FKPDLIHASSPGIMVFGALFYAK------LLC 168 (465)
T ss_pred -ccCceeeccCCcCCccCCCceee--------c-cCCHHHHHHHHh--CCCCEEEECCCchhHHHHHHHHH------HhC
Confidence 11222221110000000000000 0 011133334433 689999999754322222 2222 358
Q ss_pred CcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchh
Q 043397 265 PRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWL 344 (596)
Q Consensus 265 ~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l 344 (596)
+|+|++.|+..+... . ..... ..... .+.+.+...+.+|.|+++|+...+.+...+
T Consensus 169 ip~V~~~h~~~~~~~-~-----~~~~~-~~~~~---------------~~~~~r~~~~~ad~ii~~S~~~~~~l~~~~-- 224 (465)
T PLN02871 169 VPLVMSYHTHVPVYI-P-----RYTFS-WLVKP---------------MWDIIRFLHRAADLTLVTSPALGKELEAAG-- 224 (465)
T ss_pred CCEEEEEecCchhhh-h-----cccch-hhHHH---------------HHHHHHHHHhhCCEEEECCHHHHHHHHHcC--
Confidence 999999997643110 0 00000 00000 012234456679999999999998876443
Q ss_pred hhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHH
Q 043397 345 ASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLI 424 (596)
Q Consensus 345 ~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~l 424 (596)
..+..++.+||||+|.+.|.|..+. ...++++... .++.++|+|+||+.++||++.+
T Consensus 225 ----~~~~~kv~vi~nGvd~~~f~p~~~~------------------~~~~~~~~~~-~~~~~~i~~vGrl~~~K~~~~l 281 (465)
T PLN02871 225 ----VTAANRIRVWNKGVDSESFHPRFRS------------------EEMRARLSGG-EPEKPLIVYVGRLGAEKNLDFL 281 (465)
T ss_pred ----CCCcCeEEEeCCccCccccCCcccc------------------HHHHHHhcCC-CCCCeEEEEeCCCchhhhHHHH
Confidence 1346789999999999888765211 1233333221 1467899999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHH
Q 043397 425 THAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGM 504 (596)
Q Consensus 425 l~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAm 504 (596)
+++++++ ++++|+|+|+ |++.+.++++++. .+|+|+|+++.+++..+|++||++|+||..|++|++++|||
T Consensus 282 i~a~~~~--~~~~l~ivG~---G~~~~~l~~~~~~----~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAm 352 (465)
T PLN02871 282 KRVMERL--PGARLAFVGD---GPYREELEKMFAG----TPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAM 352 (465)
T ss_pred HHHHHhC--CCcEEEEEeC---ChHHHHHHHHhcc----CCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHH
Confidence 9999877 6899999999 9888888887763 36999999999999999999999999999999999999999
Q ss_pred hcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--hcCCHHHH
Q 043397 505 RYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME--NDNSWNNA 582 (596)
Q Consensus 505 a~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~--~~fs~~~~ 582 (596)
+||+|||+++.||+.|++.+.. ++.+|++++++|+++++++|.++++ |++.+++|++++.+ ++|||+.+
T Consensus 353 A~G~PVI~s~~gg~~eiv~~~~-----~~~~G~lv~~~d~~~la~~i~~ll~----~~~~~~~~~~~a~~~~~~fsw~~~ 423 (465)
T PLN02871 353 ASGVPVVAARAGGIPDIIPPDQ-----EGKTGFLYTPGDVDDCVEKLETLLA----DPELRERMGAAAREEVEKWDWRAA 423 (465)
T ss_pred HcCCCEEEcCCCCcHhhhhcCC-----CCCceEEeCCCCHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHhCCHHHH
Confidence 9999999999999999997511 1479999999999999999999998 99999999876654 68999999
Q ss_pred HHHHHH-HHHHHh
Q 043397 583 AGKYME-IYNSIR 594 (596)
Q Consensus 583 ~~~~~~-iy~~l~ 594 (596)
++++++ +|++++
T Consensus 424 a~~l~~~~Y~~~~ 436 (465)
T PLN02871 424 TRKLRNEQYSAAI 436 (465)
T ss_pred HHHHHHHHHHHHH
Confidence 999998 799875
No 16
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=3e-40 Score=349.87 Aligned_cols=376 Identities=24% Similarity=0.305 Sum_probs=272.6
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeC
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVS 188 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (596)
|||++++..|+|. ..||.+.++.+|+++|.++ |+|+|++...... ..+
T Consensus 1 mkI~~i~~~~~p~-~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~~------------------------------~~~ 48 (388)
T TIGR02149 1 MKVTVLTREYPPN-VYGGAGVHVEELTRELARL-MDVDVRCFGDQRF------------------------------DSE 48 (388)
T ss_pred CeeEEEecccCcc-ccccHhHHHHHHHHHHHHh-cCeeEEcCCCchh------------------------------cCC
Confidence 8999999999885 4699999999999999987 8888887432110 124
Q ss_pred CeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEE
Q 043397 189 SIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIV 268 (596)
Q Consensus 189 gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv 268 (596)
|+.++.+.....+... .. ....+...+ . +.....++||||+|++..++.+.+... ..++|+|
T Consensus 49 ~~~~~~~~~~~~~~~~--------~~--~~~~~~~~~-~-~~~~~~~~divh~~~~~~~~~~~~~~~------~~~~p~v 110 (388)
T TIGR02149 49 GLTVKGYRPWSELKEA--------NK--ALGTFSVDL-A-MANDPVDADVVHSHTWYTFLAGHLAKK------LYDKPLV 110 (388)
T ss_pred CeEEEEecChhhccch--------hh--hhhhhhHHH-H-HhhCCCCCCeEeecchhhhhHHHHHHH------hcCCCEE
Confidence 5666555421111000 00 000111111 1 111235799999998776655554332 3589999
Q ss_pred EEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhh
Q 043397 269 LTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVL 348 (596)
Q Consensus 269 ~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~ 348 (596)
+++|+..+......... +....++ ..+.+.+++.+|.|+++|+..++.+.... .
T Consensus 111 ~~~h~~~~~~~~~~~~~---~~~~~~~------------------~~~~~~~~~~ad~vi~~S~~~~~~~~~~~-----~ 164 (388)
T TIGR02149 111 VTAHSLEPLRPWKEEQL---GGGYKLS------------------SWAEKTAIEAADRVIAVSGGMREDILKYY-----P 164 (388)
T ss_pred EEeeccccccccccccc---ccchhHH------------------HHHHHHHHhhCCEEEEccHHHHHHHHHHc-----C
Confidence 99998764221110000 0000011 11244567789999999999888865321 1
Q ss_pred hccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHH
Q 043397 349 ITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAI 428 (596)
Q Consensus 349 ~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~ 428 (596)
+.+..++.+||||+|.+.+.+.. +...+++++++ ++.++|+|+||+.+.||++.+++|+
T Consensus 165 ~~~~~~i~vi~ng~~~~~~~~~~-------------------~~~~~~~~~~~--~~~~~i~~~Grl~~~Kg~~~li~a~ 223 (388)
T TIGR02149 165 DLDPEKVHVIYNGIDTKEYKPDD-------------------GNVVLDRYGID--RSRPYILFVGRITRQKGVPHLLDAV 223 (388)
T ss_pred CCCcceEEEecCCCChhhcCCCc-------------------hHHHHHHhCCC--CCceEEEEEcccccccCHHHHHHHH
Confidence 23467899999999988776541 23456777775 6788999999999999999999999
Q ss_pred HHHHHcCCEEEEEecCCC-CcchHHHHHHHHHcCC-CCcEEEE-eccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHh
Q 043397 429 KRAEELGGQMILLGNSPV-HWVQKDFEDLANLHNK-GTSTRIL-LMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMR 505 (596)
Q Consensus 429 ~~l~~~~~~lvIvG~~~~-g~~~~~l~~~~~~~~~-~~~V~~~-g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma 505 (596)
+++. ++++++++|+..+ ....+.+++.+++++. .++|.++ |.++.+++..+|++||++++||.+|++|++++|||+
T Consensus 224 ~~l~-~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a 302 (388)
T TIGR02149 224 HYIP-KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMA 302 (388)
T ss_pred HHHh-hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHH
Confidence 9885 4789999887111 1234556666666655 3457776 679999999999999999999999999999999999
Q ss_pred cCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCH------HHHHHHHHHHHHhccCCHHHHHHHHHHHHH---hc
Q 043397 506 YGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDE------GSLNWALDRAFRHFIDKPEEWNRIVQKIME---ND 576 (596)
Q Consensus 506 ~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~------~~la~~i~~ll~~~~~~~~~~~~~~~~~~~---~~ 576 (596)
+|+|||+++.||..|++.+ +.+|+++++.|+ ++++++|.++++ +++.+++|++++.+ ++
T Consensus 303 ~G~PvI~s~~~~~~e~i~~--------~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~----~~~~~~~~~~~a~~~~~~~ 370 (388)
T TIGR02149 303 CGTPVVASATGGIPEVVVD--------GETGFLVPPDNSDADGFQAELAKAINILLA----DPELAKKMGIAGRKRAEEE 370 (388)
T ss_pred cCCCEEEeCCCCHHHHhhC--------CCceEEcCCCCCcccchHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988 689999999888 899999999998 99999999876654 68
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 043397 577 NSWNNAAGKYMEIYNSIR 594 (596)
Q Consensus 577 fs~~~~~~~~~~iy~~l~ 594 (596)
|||+.+++++.++|++++
T Consensus 371 ~s~~~~~~~~~~~y~~~~ 388 (388)
T TIGR02149 371 FSWGSIAKKTVEMYRKVL 388 (388)
T ss_pred CCHHHHHHHHHHHHHhhC
Confidence 999999999999999874
No 17
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.3e-39 Score=342.63 Aligned_cols=367 Identities=21% Similarity=0.208 Sum_probs=270.0
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeC
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVS 188 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (596)
|||++++ +| ..||.++++.+++++|.++||+|+|+|...+...... ..
T Consensus 1 mki~~~~---~p--~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~~---------------------------~~ 48 (371)
T cd04962 1 MKIGIVC---YP--TYGGSGVVATELGKALARRGHEVHFITSSRPFRLDEY---------------------------SP 48 (371)
T ss_pred CceeEEE---Ee--CCCCccchHHHHHHHHHhcCCceEEEecCCCcchhhh---------------------------cc
Confidence 7999997 34 4699999999999999999999999985422110000 11
Q ss_pred CeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEE
Q 043397 189 SIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIV 268 (596)
Q Consensus 189 gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv 268 (596)
++.++.++.. ..... .. ..........+.+.++. .+|||||+|.+.....+.++.... .+..++|++
T Consensus 49 ~~~~~~~~~~-~~~~~----~~----~~~~~~~~~~l~~~i~~--~~~divh~~~~~~~~~~~~~~~~~--~~~~~~~~i 115 (371)
T cd04962 49 NIFFHEVEVP-QYPLF----QY----PPYDLALASKIAEVAKR--YKLDLLHVHYAVPHAVAAYLAREI--LGKKDLPVV 115 (371)
T ss_pred CeEEEEeccc-ccchh----hc----chhHHHHHHHHHHHHhc--CCccEEeecccCCccHHHHHHHHh--cCcCCCcEE
Confidence 2222211100 00000 00 00011123444444443 699999999765433333322211 112378999
Q ss_pred EEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhh
Q 043397 269 LTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVL 348 (596)
Q Consensus 269 ~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~ 348 (596)
+++|+...... +.. .....+.+.+++.+|.|+++|+...+.+... +
T Consensus 116 ~~~h~~~~~~~---------~~~-------------------~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~------~ 161 (371)
T cd04962 116 TTLHGTDITLV---------GQD-------------------PSFQPATRFSIEKSDGVTAVSESLRQETYEL------F 161 (371)
T ss_pred EEEcCCccccc---------ccc-------------------ccchHHHHHHHhhCCEEEEcCHHHHHHHHHh------c
Confidence 99997643110 000 0111234556777999999999988876432 1
Q ss_pred hccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHH
Q 043397 349 ITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAI 428 (596)
Q Consensus 349 ~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~ 428 (596)
....++.+||||+|...+.+.. +...++++++. ++.++++++||+.+.||++.+++|+
T Consensus 162 -~~~~~i~vi~n~~~~~~~~~~~-------------------~~~~~~~~~~~--~~~~~il~~g~l~~~K~~~~li~a~ 219 (371)
T cd04962 162 -DITKEIEVIPNFVDEDRFRPKP-------------------DEALKRRLGAP--EGEKVLIHISNFRPVKRIDDVIRIF 219 (371)
T ss_pred -CCcCCEEEecCCcCHhhcCCCc-------------------hHHHHHhcCCC--CCCeEEEEecccccccCHHHHHHHH
Confidence 2356899999999987665431 12334566665 6778899999999999999999999
Q ss_pred HHHHH-cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcC
Q 043397 429 KRAEE-LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYG 507 (596)
Q Consensus 429 ~~l~~-~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G 507 (596)
.++.+ .+++|+|+|. |+..+.+++.++++++.++|.|.|..++ +..+|+.||++++||..|++|++++|||++|
T Consensus 220 ~~l~~~~~~~l~i~G~---g~~~~~~~~~~~~~~~~~~v~~~g~~~~--~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g 294 (371)
T cd04962 220 AKVRKEVPARLLLVGD---GPERSPAERLARELGLQDDVLFLGKQDH--VEELLSIADLFLLPSEKESFGLAALEAMACG 294 (371)
T ss_pred HHHHhcCCceEEEEcC---CcCHHHHHHHHHHcCCCceEEEecCccc--HHHHHHhcCEEEeCCCcCCCccHHHHHHHcC
Confidence 99866 4789999999 8888899999999998889999998754 9999999999999999999999999999999
Q ss_pred CceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH---hcCCHHHHHH
Q 043397 508 AVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME---NDNSWNNAAG 584 (596)
Q Consensus 508 ~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~---~~fs~~~~~~ 584 (596)
+|+|+++.||..|++.+ +.+|++++++|+++++++|.++++ +++.+.+|++++.+ ++|||+.+++
T Consensus 295 ~PvI~s~~~~~~e~i~~--------~~~G~~~~~~~~~~l~~~i~~l~~----~~~~~~~~~~~~~~~~~~~fs~~~~~~ 362 (371)
T cd04962 295 VPVVASNAGGIPEVVKH--------GETGFLVDVGDVEAMAEYALSLLE----DDELWQEFSRAARNRAAERFDSERIVP 362 (371)
T ss_pred CCEEEeCCCCchhhhcC--------CCceEEcCCCCHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999988 789999999999999999999998 89999888866553 6899999999
Q ss_pred HHHHHHHHH
Q 043397 585 KYMEIYNSI 593 (596)
Q Consensus 585 ~~~~iy~~l 593 (596)
+|.++|+++
T Consensus 363 ~~~~~y~~~ 371 (371)
T cd04962 363 QYEALYRRL 371 (371)
T ss_pred HHHHHHHhC
Confidence 999999874
No 18
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=100.00 E-value=5.7e-39 Score=349.11 Aligned_cols=462 Identities=15% Similarity=0.183 Sum_probs=355.2
Q ss_pred EEEEeecc-----cccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhh-----------hhccc-----c--e--
Q 043397 111 IIHITAEM-----APIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQ-----------EISDL-----A--L-- 165 (596)
Q Consensus 111 Il~is~~~-----~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~-----------~~~~~-----~--~-- 165 (596)
|+++|.|| .|. ..||+|+.+....++++..|...+.++-.|...--. ....+ . .
T Consensus 1 ~ayf~~E~g~~~~~p~-ysGGLG~LAgd~l~saa~l~~p~~g~gl~Y~~Gyf~Q~i~~~g~Q~e~~~~~~~~~~p~~~~~ 79 (601)
T TIGR02094 1 VAYFSMEYGLHESLPI-YSGGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKVL 79 (601)
T ss_pred CeEEeeccccCCCCCc-cCchHHHHHHHHHHHHHhCCCCeEEEEeccCCCceeEEECCCCceeecCCccccCCCceEEEe
Confidence 45566666 344 689999999999999999999999888554321100 00000 0 0
Q ss_pred -----eeeEEeecCCceEEEEEEeeeeCCeEEEEEcCCc---cccCCC---cccCCCh-hhHHHHHHHHHHHHHHHHhhC
Q 043397 166 -----ITTYNSYHDGNWVATNAYHGVVSSIPVIFIEPSN---QFFKGK---NVYGGSY-NELEAYLFFSRACLEWMQVTG 233 (596)
Q Consensus 166 -----~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~---~~~~~~---~~y~~~~-~~~~~~~~f~~~~~~~l~~~~ 233 (596)
...++++..+..+..++|.....++++++++... ..+.+. .+|+++. .++.++.+|+.+.++.++..+
T Consensus 80 ~~~g~~~~~~v~i~g~~~~~rlw~~~~~~v~lylld~~~~~n~~~~R~it~~LY~~D~~~R~~Qe~fl~~a~l~~l~~l~ 159 (601)
T TIGR02094 80 DTDGKWLKISVRIRGRDVYAKVWRVQVGRVPLYLLDTNIPENSEDDRWITGRLYGGDKEMRIAQEIVLGIGGVRALRALG 159 (601)
T ss_pred cCCCCeEEEEEecCCcEEEEEEEEEEeCCCCEEEecCCCcccchhhcCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2257788888899999999999999999998432 244444 5797654 456667999999999998878
Q ss_pred CCCcEEEEcCCccchHHHHHHHHhh--------hccCCCCcEEEEEcCCCCCCc--chhhhhh--------hcCCCchhh
Q 043397 234 VQPDIIHVHEWQIGALPLLYWDMYQ--------SLSLKKPRIVLTIHNMEHYGE--CRQEQLS--------KCGLDGSIY 295 (596)
Q Consensus 234 ~~pDVIh~~~~~~~~~~~~~~~~~~--------~~~~~~~pvv~tiH~~~~~~~--~~~~~~~--------~~~~~~~~~ 295 (596)
.+|||||+|+||+++++..+.+... .....+.++++|+|+..++|. ++...+. ..++....+
T Consensus 160 ~~pdviH~ND~Htal~~~el~r~l~~~~~~~~~a~~~~~~~~vfTiHt~~~qG~e~f~~~~~~~~~~~~~~~~gl~~~~~ 239 (601)
T TIGR02094 160 IDPDVYHLNEGHAAFVTLERIRELIAQGLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLMRKYFGDYAANLGLPREQL 239 (601)
T ss_pred CCceEEEeCCchHHHHHHHHHHHHHHcCCCHHHHHHhcCCeEEEeCCCchHHHhhhcCHHHHHHHhhhhhhHhCCCHHHH
Confidence 8999999999999999887543211 001125789999999999886 7655553 245554444
Q ss_pred hhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhh-cchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCC
Q 043397 296 ASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLC-SGWLASVLITHRDKYFGILNGIDTVIWNPATDAF 374 (596)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~-~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~ 374 (596)
........ .+.+.+++++.++..||.|.+||+.+.+.... .+.+...+.....++..|.||||...|.|.++..
T Consensus 240 ~~~~~~~~-----~~~~~vnm~~lai~~S~~vngVS~lh~~v~~~l~~~l~~~~~~~~~~i~gItNGId~~~W~~~~~~~ 314 (601)
T TIGR02094 240 LALGRENP-----DDPEPFNMTVLALRLSRIANGVSKLHGEVSRKMWQFLYPGYEEEEVPIGYVTNGVHNPTWVAPELRD 314 (601)
T ss_pred Hhhhhhcc-----CccCceeHHHHHHHhCCeeeeecHHHHHHHHHHHHhhhhhcccccCCccceeCCccccccCCHHHHH
Confidence 33222110 01256899999999999999999999884321 1112222233355699999999999999999988
Q ss_pred CccccCCCC----------------------chhhhhhHHHHHh---------------------hcCCCCCCCccEEEE
Q 043397 375 LPAKFHAQK----------------------PEGKKICKYYIQK---------------------GLGLKSEGTVPLVVC 411 (596)
Q Consensus 375 ~~~~~~~~~----------------------~~~k~~~k~~~~~---------------------~l~l~~~~~~~~il~ 411 (596)
+...|.... .+.|..+|..+++ .+|++.+++.+++++
T Consensus 315 l~~~y~~~~w~~~~~~~~~~~~~~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~gl~~dpd~~~ig~ 394 (601)
T TIGR02094 315 LYERYLGENWRELLADEELWEAIDDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAILMATDRFLDPDVLTIGF 394 (601)
T ss_pred HHHHhCCcchhccchhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhhccccCCCCcEEEE
Confidence 888888766 4789999999988 467767788999999
Q ss_pred EecccccCCHHHHHHHHHHHHH------cCCEEEEEecCCCCc--------chHHHHHHHHHcCCCCcEEEEeccCHHHH
Q 043397 412 ITRLVAQKGLHLITHAIKRAEE------LGGQMILLGNSPVHW--------VQKDFEDLANLHNKGTSTRILLMYSEELS 477 (596)
Q Consensus 412 iGrl~~~KGi~~ll~A~~~l~~------~~~~lvIvG~~~~g~--------~~~~l~~~~~~~~~~~~V~~~g~~~~~~l 477 (596)
++|+..+||++++++++.++.+ .+++|+++|+ +. +.+.+..+++.....++|.|+-.++.+..
T Consensus 395 v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gk---a~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~~Yd~~lA 471 (601)
T TIGR02094 395 ARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGK---AHPADGEGKEIIQRIVEFSKRPEFRGRIVFLENYDINLA 471 (601)
T ss_pred EEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEe---cCcccchHHHHHHHHHHHHhcccCCCCEEEEcCCCHHHH
Confidence 9999999999999999988863 4789999999 43 55666677765334568999999999999
Q ss_pred HHHHHhCCEEEE-cCC-CCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeC------------CC
Q 043397 478 HMLYAAADIVLV-PSI-YEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEG------------ID 543 (596)
Q Consensus 478 ~~~~a~aDi~l~-PS~-~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~------------~d 543 (596)
+.++++||++++ ||+ +|+||++.|-||..|.+.+++--|...|.. + ++|||.+.+ .|
T Consensus 472 ~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~-~--------~~nGf~f~~~~~~~~~~~~d~~d 542 (601)
T TIGR02094 472 RYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGY-D--------GDNGWAIGDGEEYDDEEEQDRLD 542 (601)
T ss_pred HHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccC-C--------CCcEEEECCCccccccccccCCC
Confidence 999999999999 999 999999999999998888887777766665 3 589999984 79
Q ss_pred HHHHHHHHHHHH-HhccCC-----HHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 043397 544 EGSLNWALDRAF-RHFIDK-----PEEWNRIVQKIMEN---DNSWNNAAGKYMEIY 590 (596)
Q Consensus 544 ~~~la~~i~~ll-~~~~~~-----~~~~~~~~~~~~~~---~fs~~~~~~~~~~iy 590 (596)
+++|.++|++.+ ..|.++ |..|.+|.+++|.. +|||++++++|.++|
T Consensus 543 a~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 543 AEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 999999998877 777655 66799999999996 799999999999987
No 19
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=5.2e-39 Score=340.97 Aligned_cols=280 Identities=16% Similarity=0.189 Sum_probs=225.5
Q ss_pred CCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcc
Q 043397 233 GVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPE 312 (596)
Q Consensus 233 ~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (596)
..+||+||+|.+..+.....++.. ...+.|+++|.|+.+.... .. .. .+
T Consensus 116 ~~~~diihaH~~~~~~~~~~~~~~----~~~~~~~~~t~Hg~d~~~~---~~------~~-~~----------------- 164 (406)
T PRK15427 116 PFVADVFIAHFGPAGVTAAKLREL----GVLRGKIATIFHGIDISSR---EV------LN-HY----------------- 164 (406)
T ss_pred cCCCCEEEEcCChHHHHHHHHHHh----CCCCCCeEEEEcccccccc---hh------hh-hh-----------------
Confidence 468999999976655444443321 1234567889997643110 00 00 00
Q ss_pred cchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHH
Q 043397 313 RLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKY 392 (596)
Q Consensus 313 ~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~ 392 (596)
...++..++.+|.++++|+..++.+...| .+.+++.+||||+|.+.|.+....
T Consensus 165 -~~~~~~~~~~ad~vv~~S~~~~~~l~~~g-------~~~~ki~vi~nGvd~~~f~~~~~~------------------- 217 (406)
T PRK15427 165 -TPEYQQLFRRGDLMLPISDLWAGRLQKMG-------CPPEKIAVSRMGVDMTRFSPRPVK------------------- 217 (406)
T ss_pred -hHHHHHHHHhCCEEEECCHHHHHHHHHcC-------CCHHHEEEcCCCCCHHHcCCCccc-------------------
Confidence 01233346679999999999888865443 456799999999998887653210
Q ss_pred HHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEe
Q 043397 393 YIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILL 470 (596)
Q Consensus 393 ~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g 470 (596)
. ..+...|+|+||+.++||++.+++|++.+.+ ++++|+|+|+ |+..+.++++++++++.++|.|.|
T Consensus 218 -------~--~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~---G~~~~~l~~~~~~~~l~~~V~~~G 285 (406)
T PRK15427 218 -------A--PATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGI---GPWERRLRTLIEQYQLEDVVEMPG 285 (406)
T ss_pred -------c--CCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEEC---chhHHHHHHHHHHcCCCCeEEEeC
Confidence 0 0345679999999999999999999999876 5789999999 999999999999999999999999
Q ss_pred ccCHHHHHHHHHhCCEEEEcCCC------CCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCH
Q 043397 471 MYSEELSHMLYAAADIVLVPSIY------EPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDE 544 (596)
Q Consensus 471 ~~~~~~l~~~~a~aDi~l~PS~~------E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~ 544 (596)
.++.+++..+|+.||++++||.. |++|++++|||+||+|||+|+.||++|++.+ +.+|++++++|+
T Consensus 286 ~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~E~v~~--------~~~G~lv~~~d~ 357 (406)
T PRK15427 286 FKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPELVEA--------DKSGWLVPENDA 357 (406)
T ss_pred CCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCchhhhcC--------CCceEEeCCCCH
Confidence 99999999999999999999974 9999999999999999999999999999998 789999999999
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHHH
Q 043397 545 GSLNWALDRAFRHFIDKPEEWNRIVQKIM---ENDNSWNNAAGKYMEIYNSI 593 (596)
Q Consensus 545 ~~la~~i~~ll~~~~~~~~~~~~~~~~~~---~~~fs~~~~~~~~~~iy~~l 593 (596)
++|+++|.++++. |++.+++|++++. +++|+|+.+++++.++|+++
T Consensus 358 ~~la~ai~~l~~~---d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~~ 406 (406)
T PRK15427 358 QALAQRLAAFSQL---DTDELAPVVKRAREKVETDFNQQVINRELASLLQAL 406 (406)
T ss_pred HHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 9999999999873 7888888886654 47999999999999999863
No 20
>PLN00142 sucrose synthase
Probab=100.00 E-value=1.2e-39 Score=358.18 Aligned_cols=433 Identities=13% Similarity=0.117 Sum_probs=284.6
Q ss_pred ceeEEEEeeccc-------ccccccCHHHHHhHHH--------HHHHhcCCeEE----EEeccccchhhhhhcccceeee
Q 043397 108 LMHIIHITAEMA-------PIAKVGGLGDVVTGLA--------RACLSRGHTVD----IMLPFYECIQKQEISDLALITT 168 (596)
Q Consensus 108 ~mkIl~is~~~~-------P~~~~GG~~~~~~~La--------~aL~~~Gh~V~----vi~p~~~~~~~~~~~~~~~~~~ 168 (596)
-|+|++||..-+ -.+.+||...++.++| ++|+++||+|+ |+|...+......
T Consensus 279 ~~~i~~iS~Hg~~~~~~~lG~~DtGGQ~vYVl~~aral~~el~~~l~~~G~~v~~~v~i~TR~i~~~~~~~--------- 349 (815)
T PLN00142 279 VFNVVIFSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKQQGLDIKPQILIVTRLIPDAKGTT--------- 349 (815)
T ss_pred hHhhheecccccccccccCCCCCCCCceehHHHHHHHHHHHHHHHHHhcCCCccceeEEEEeccCCccCCc---------
Confidence 369999987764 1125799998997655 67778999874 8884322110000
Q ss_pred EEeecCCceEEEEEEeeeeCCeEEEEEcCCc--cccCCCcccCCChhhHHHH-HHHHHHHHHHH-HhhCCCCcEEEEcCC
Q 043397 169 YNSYHDGNWVATNAYHGVVSSIPVIFIEPSN--QFFKGKNVYGGSYNELEAY-LFFSRACLEWM-QVTGVQPDIIHVHEW 244 (596)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~--~~~~~~~~y~~~~~~~~~~-~~f~~~~~~~l-~~~~~~pDVIh~~~~ 244 (596)
+..+.. ......++.+.+++... .+... +. +..++..+ ..|...+.+.+ +..+..||+||+|.|
T Consensus 350 ~~~~~e--------~v~~~~~~~I~rvP~g~~~~~l~~---~i-~ke~l~p~L~~f~~~~~~~~~~~~~~~PDlIHaHYw 417 (815)
T PLN00142 350 CNQRLE--------KVSGTEHSHILRVPFRTEKGILRK---WI-SRFDVWPYLETFAEDAASEILAELQGKPDLIIGNYS 417 (815)
T ss_pred ccCcce--------eccCCCceEEEecCCCCCcccccc---cc-CHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCc
Confidence 000000 00112467777777321 11100 00 11222222 34666666544 334567999999999
Q ss_pred ccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhcccc
Q 043397 245 QIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYS 324 (596)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 324 (596)
.+++++..+... .++|.|+|.|........ ..+..+. ..+..+ +...++.....++..|
T Consensus 418 dsg~vA~~La~~------lgVP~v~T~HsL~k~K~~------~~~~~~~---~~e~~y------~~~~r~~aE~~a~~~A 476 (815)
T PLN00142 418 DGNLVASLLAHK------LGVTQCTIAHALEKTKYP------DSDIYWK---KFDDKY------HFSCQFTADLIAMNHA 476 (815)
T ss_pred cHHHHHHHHHHH------hCCCEEEEcccchhhhcc------ccCCccc---ccchhh------hhhhchHHHHHHHHhh
Confidence 999999887654 599999999977521110 0011100 000000 1112344566678889
Q ss_pred CeEEEeChhhHHHHh----hcc----h----hhhhh---hccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhh
Q 043397 325 NAVVTVSPTYLKETL----CSG----W----LASVL---ITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKI 389 (596)
Q Consensus 325 d~vi~vS~~~~~~~~----~~g----~----l~~~~---~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~ 389 (596)
|.||+.|......+. +.+ + +.... .....++.+||+|+|...|.|..+.......-...++.+.-
T Consensus 477 d~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I~~~l~ 556 (815)
T PLN00142 477 DFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQKRLTSLHPSIEELLY 556 (815)
T ss_pred hHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCCChHHhhHHhhcccchhhcC
Confidence 999999976654221 110 0 01110 11245899999999999887754210000000001112222
Q ss_pred hHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHH--cCCEEEEEecCCCCc---c------hHHHHHHHH
Q 043397 390 CKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--LGGQMILLGNSPVHW---V------QKDFEDLAN 458 (596)
Q Consensus 390 ~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~~~~lvIvG~~~~g~---~------~~~l~~~~~ 458 (596)
+....++.+++..++++++|+++||+.++||++.+++|+.++.+ ++++|+|+|+..++. . .+.+.++++
T Consensus 557 ~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~ 636 (815)
T PLN00142 557 SPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIE 636 (815)
T ss_pred ChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHH
Confidence 33344556776444678899999999999999999999998754 478999999821110 1 134677889
Q ss_pred HcCCCCcEEEEecc----CHHHHHHHHH-hCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCc
Q 043397 459 LHNKGTSTRILLMY----SEELSHMLYA-AADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEK 533 (596)
Q Consensus 459 ~~~~~~~V~~~g~~----~~~~l~~~~a-~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~ 533 (596)
++++.++|+|+|.. +.+++..+++ ++|++++||.+|+||++++||||||+|||+|+.||+.|+|.+ +
T Consensus 637 ~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG~~EIV~d--------G 708 (815)
T PLN00142 637 KYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGGPAEIIVD--------G 708 (815)
T ss_pred HcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcC--------C
Confidence 99999999999853 3466777776 579999999999999999999999999999999999999999 7
Q ss_pred cceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHH
Q 043397 534 ANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME---NDNSWNNAAGKYMEIY 590 (596)
Q Consensus 534 ~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~iy 590 (596)
.+|+++++.|+++++++|.+++....+|++.|.+|++++.+ ++|||+.++++++++-
T Consensus 709 ~tG~LV~P~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e~FSWe~~A~rll~L~ 768 (815)
T PLN00142 709 VSGFHIDPYHGDEAANKIADFFEKCKEDPSYWNKISDAGLQRIYECYTWKIYAERLLTLG 768 (815)
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 89999999999999999988775444599999999987755 6899999999999875
No 21
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=7.6e-39 Score=337.57 Aligned_cols=362 Identities=17% Similarity=0.126 Sum_probs=261.5
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccc-cchhhhhhcccceeeeEEeecCCceEEEEEEeeee
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFY-ECIQKQEISDLALITTYNSYHDGNWVATNAYHGVV 187 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (596)
.||+++...+ ..||.++++..|+++|.+.||++.+++... ....+ .. ..
T Consensus 2 ~~il~ii~~~----~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~-~~-------------------------~~ 51 (374)
T TIGR03088 2 PLIVHVVYRF----DVGGLENGLVNLINHLPADRYRHAVVALTEVSAFRK-RI-------------------------QR 51 (374)
T ss_pred ceEEEEeCCC----CCCcHHHHHHHHHhhccccccceEEEEcCCCChhHH-HH-------------------------Hh
Confidence 5899998777 569999999999999999999998887322 11111 00 02
Q ss_pred CCeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcE
Q 043397 188 SSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRI 267 (596)
Q Consensus 188 ~gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pv 267 (596)
.|+.++.+.... . . ...+...+.++++. .+|||||+|+..... +.+... ..+.|+
T Consensus 52 ~~i~~~~~~~~~-~-~--------------~~~~~~~l~~~l~~--~~~Divh~~~~~~~~-~~~~~~------~~~~~~ 106 (374)
T TIGR03088 52 PDVAFYALHKQP-G-K--------------DVAVYPQLYRLLRQ--LRPDIVHTRNLAALE-AQLPAA------LAGVPA 106 (374)
T ss_pred cCceEEEeCCCC-C-C--------------ChHHHHHHHHHHHH--hCCCEEEEcchhHHH-HHHHHH------hcCCCe
Confidence 456666654210 0 0 01123344455543 689999999743321 222211 134453
Q ss_pred -EEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhh
Q 043397 268 -VLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLAS 346 (596)
Q Consensus 268 -v~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~ 346 (596)
+++.|......... ....+.. +.+...+.+|.++++|+...+.+...
T Consensus 107 ~i~~~h~~~~~~~~~---------~~~~~~~------------------~~~~~~~~~~~~i~vs~~~~~~~~~~----- 154 (374)
T TIGR03088 107 RIHGEHGRDVFDLDG---------SNWKYRW------------------LRRLYRPLIHHYVAVSRDLEDWLRGP----- 154 (374)
T ss_pred EEEeecCcccccchh---------hHHHHHH------------------HHHHHHhcCCeEEEeCHHHHHHHHHh-----
Confidence 45555432110000 0000111 11122344799999999888875432
Q ss_pred hhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHH
Q 043397 347 VLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITH 426 (596)
Q Consensus 347 ~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~ 426 (596)
++.+..++.+|+||+|.+.|.+.... +...++....+ .+.++++++||+.++||++.+++
T Consensus 155 -~~~~~~~~~vi~ngvd~~~~~~~~~~-----------------~~~~~~~~~~~--~~~~~i~~vGrl~~~Kg~~~li~ 214 (374)
T TIGR03088 155 -VKVPPAKIHQIYNGVDTERFHPSRGD-----------------RSPILPPDFFA--DESVVVGTVGRLQAVKDQPTLVR 214 (374)
T ss_pred -cCCChhhEEEeccCccccccCCCccc-----------------hhhhhHhhcCC--CCCeEEEEEecCCcccCHHHHHH
Confidence 33456789999999998887654211 11111222222 56789999999999999999999
Q ss_pred HHHHHHHc------CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHH
Q 043397 427 AIKRAEEL------GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQ 500 (596)
Q Consensus 427 A~~~l~~~------~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~ 500 (596)
|+.++.+. +++|+++|+ |+..+.+++.++++++.+++.|.|..++ +..+|++||++++||..|+||+++
T Consensus 215 a~~~l~~~~~~~~~~~~l~i~G~---g~~~~~~~~~~~~~~~~~~v~~~g~~~~--~~~~~~~adi~v~pS~~Eg~~~~~ 289 (374)
T TIGR03088 215 AFALLVRQLPEGAERLRLVIVGD---GPARGACEQMVRAAGLAHLVWLPGERDD--VPALMQALDLFVLPSLAEGISNTI 289 (374)
T ss_pred HHHHHHHhCcccccceEEEEecC---CchHHHHHHHHHHcCCcceEEEcCCcCC--HHHHHHhcCEEEeccccccCchHH
Confidence 99988642 689999999 8888999999999999888999997554 999999999999999999999999
Q ss_pred HHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH---HhcC
Q 043397 501 MIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIM---ENDN 577 (596)
Q Consensus 501 lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~---~~~f 577 (596)
+|||+||+|+|++++||..|++.+ +.+|++++++|+++++++|.++++ +++.+.++++++. +++|
T Consensus 290 lEAma~G~Pvv~s~~~g~~e~i~~--------~~~g~~~~~~d~~~la~~i~~l~~----~~~~~~~~~~~a~~~~~~~f 357 (374)
T TIGR03088 290 LEAMASGLPVIATAVGGNPELVQH--------GVTGALVPPGDAVALARALQPYVS----DPAARRAHGAAGRARAEQQF 357 (374)
T ss_pred HHHHHcCCCEEEcCCCCcHHHhcC--------CCceEEeCCCCHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999988 689999999999999999999998 8888888876554 3799
Q ss_pred CHHHHHHHHHHHHHHHh
Q 043397 578 SWNNAAGKYMEIYNSIR 594 (596)
Q Consensus 578 s~~~~~~~~~~iy~~l~ 594 (596)
||+.++++|.++|++++
T Consensus 358 s~~~~~~~~~~~y~~~~ 374 (374)
T TIGR03088 358 SINAMVAAYAGLYDQLL 374 (374)
T ss_pred CHHHHHHHHHHHHHHhC
Confidence 99999999999999874
No 22
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=3.1e-38 Score=332.79 Aligned_cols=359 Identities=16% Similarity=0.183 Sum_probs=260.4
Q ss_pred eEEEEeecccccc--cccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeee
Q 043397 110 HIIHITAEMAPIA--KVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVV 187 (596)
Q Consensus 110 kIl~is~~~~P~~--~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (596)
||++++++-.|.+ ..||+++++.++++.|. ++|+++|-..+.++..+. ..
T Consensus 4 ~~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~-------------------------~~ 55 (380)
T PRK15484 4 KIIFTVTPIFSIPPRGAAAVETWIYQVAKRTS---IPNRIACIKNPGYPEYTK-------------------------VN 55 (380)
T ss_pred eEEEEeccCCCCCCccccHHHHHHHHhhhhcc---CCeeEEEecCCCCCchhh-------------------------cc
Confidence 7888777665543 48999999999999994 499999965554332211 13
Q ss_pred CCeEEEEEcCCccccCC-CcccCCChhhHHHHHHHHHHHHHHHHhh-CCCCcEEEEcCCccchHHHHHHHHhhhccCCCC
Q 043397 188 SSIPVIFIEPSNQFFKG-KNVYGGSYNELEAYLFFSRACLEWMQVT-GVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKP 265 (596)
Q Consensus 188 ~gv~v~~~~~~~~~~~~-~~~y~~~~~~~~~~~~f~~~~~~~l~~~-~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (596)
+|+.++.++....+.+. ++.+. + ....+...+...+... ..++||||+|+... +...+ .. +.++.
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~~~~~-~~-----~~~~~ 122 (380)
T PRK15484 56 DNCDIHYIGFSRIYKRLFQKWTR-----L-DPLPYSQRILNIAHKFTITKDSVIVIHNSMK-LYRQI-RE-----RAPQA 122 (380)
T ss_pred CCCceEEEEeccccchhhhhhhc-----c-CchhHHHHHHHHHHhcCCCCCcEEEEeCcHH-hHHHH-Hh-----hCCCC
Confidence 56666666421111000 00000 0 1223445555555443 36799999997332 11111 11 15678
Q ss_pred cEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhh
Q 043397 266 RIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLA 345 (596)
Q Consensus 266 pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~ 345 (596)
|+++++|+..... .+..++.++++|+..++.+...
T Consensus 123 ~~v~~~h~~~~~~-----------------------------------------~~~~~~~ii~~S~~~~~~~~~~---- 157 (380)
T PRK15484 123 KLVMHMHNAFEPE-----------------------------------------LLDKNAKIIVPSQFLKKFYEER---- 157 (380)
T ss_pred CEEEEEecccChh-----------------------------------------HhccCCEEEEcCHHHHHHHHhh----
Confidence 9999999753100 0123688999999888775432
Q ss_pred hhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHH
Q 043397 346 SVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLIT 425 (596)
Q Consensus 346 ~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll 425 (596)
.+..++.+||||+|...|.+.. +..+++.++++ ++.++|+|+||+.+.||++.++
T Consensus 158 ----~~~~~i~vIpngvd~~~~~~~~-------------------~~~~~~~~~~~--~~~~~il~~Grl~~~Kg~~~Li 212 (380)
T PRK15484 158 ----LPNADISIVPNGFCLETYQSNP-------------------QPNLRQQLNIS--PDETVLLYAGRISPDKGILLLM 212 (380)
T ss_pred ----CCCCCEEEecCCCCHHHcCCcc-------------------hHHHHHHhCCC--CCCeEEEEeccCccccCHHHHH
Confidence 2456899999999987776541 23345667775 5678899999999999999999
Q ss_pred HHHHHHHH--cCCEEEEEecCCC------CcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCC-CCC
Q 043397 426 HAIKRAEE--LGGQMILLGNSPV------HWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIY-EPC 496 (596)
Q Consensus 426 ~A~~~l~~--~~~~lvIvG~~~~------g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~-E~~ 496 (596)
+|+.++.+ ++++|+|+|+... ..+.+.+++++++++ .+|.|+|+++.+++..+|++||++++||.+ |+|
T Consensus 213 ~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~--~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f 290 (380)
T PRK15484 213 QAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG--DRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAF 290 (380)
T ss_pred HHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcC--CcEEEeCCCCHHHHHHHHHhCCEEEeCCCCcccc
Confidence 99999865 6899999998211 112345566666665 479999999999999999999999999986 999
Q ss_pred chHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceE-EEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH--
Q 043397 497 GLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGF-VFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIM-- 573 (596)
Q Consensus 497 gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~-lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~-- 573 (596)
|++++|||+||+|||+++.||++|++.+ +.+|+ ++++.|+++++++|.++++ |+++ .+|++++.
T Consensus 291 ~~~~lEAma~G~PVI~s~~gg~~Eiv~~--------~~~G~~l~~~~d~~~la~~I~~ll~----d~~~-~~~~~~ar~~ 357 (380)
T PRK15484 291 CMVAVEAMAAGKPVLASTKGGITEFVLE--------GITGYHLAEPMTSDSIISDINRTLA----DPEL-TQIAEQAKDF 357 (380)
T ss_pred ccHHHHHHHcCCCEEEeCCCCcHhhccc--------CCceEEEeCCCCHHHHHHHHHHHHc----CHHH-HHHHHHHHHH
Confidence 9999999999999999999999999988 78998 5678899999999999998 8875 66776654
Q ss_pred -HhcCCHHHHHHHHHHHHHHHh
Q 043397 574 -ENDNSWNNAAGKYMEIYNSIR 594 (596)
Q Consensus 574 -~~~fs~~~~~~~~~~iy~~l~ 594 (596)
.++|||+.++++|+++|++..
T Consensus 358 ~~~~fsw~~~a~~~~~~l~~~~ 379 (380)
T PRK15484 358 VFSKYSWEGVTQRFEEQIHNWF 379 (380)
T ss_pred HHHhCCHHHHHHHHHHHHHHhc
Confidence 379999999999999998753
No 23
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=1.7e-37 Score=329.85 Aligned_cols=376 Identities=17% Similarity=0.180 Sum_probs=252.0
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCC
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSS 189 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (596)
|||||...|++ . ...||++|+++||+|+++|+...... ..|
T Consensus 1 ~il~~~~~~p~--------~-~~~la~~L~~~G~~v~~~~~~~~~~~------------------------------~~~ 41 (396)
T cd03818 1 RILFVHQNFPG--------Q-FRHLAPALAAQGHEVVFLTEPNAAPP------------------------------PGG 41 (396)
T ss_pred CEEEECCCCch--------h-HHHHHHHHHHCCCEEEEEecCCCCCC------------------------------CCC
Confidence 68999877742 2 25799999999999999996533210 015
Q ss_pred eEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHH---HhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCc
Q 043397 190 IPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWM---QVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPR 266 (596)
Q Consensus 190 v~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l---~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~p 266 (596)
|+++.+.+...-.+....|.. ..........++.+.+ ...+.+|||||+|.... .+..++.. ++++|
T Consensus 42 v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~pdvi~~h~~~~--~~~~l~~~-----~~~~~ 111 (396)
T cd03818 42 VRVVRYRPPRGPTSGTHPYLR---EFEEAVLRGQAVARALLALRAKGFRPDVIVAHPGWG--ETLFLKDV-----WPDAP 111 (396)
T ss_pred eeEEEecCCCCCCCCCCccch---hHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccc--hhhhHHHh-----CCCCC
Confidence 777777632111111111221 2222222222222222 23457899999996332 12223332 56789
Q ss_pred EEEEEcCCCCCCcchhhhhhhcCCCchhhhhh--hhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchh
Q 043397 267 IVLTIHNMEHYGECRQEQLSKCGLDGSIYASV--EKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWL 344 (596)
Q Consensus 267 vv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l 344 (596)
+|.+.|-.... ... ..+......... ...+ .....+....++.+|.++++|+..++.+...
T Consensus 112 ~v~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~--- 174 (396)
T cd03818 112 LIGYFEFYYRA-EGA-----DVGFDPEFPPSLDDALRL--------RNRNALILLALAQADAGVSPTRWQRSTFPAE--- 174 (396)
T ss_pred EEEEEeeeecC-CCC-----CCCCCCCCCCchhHHHHH--------HHhhhHhHHHHHhCCEEECCCHHHHhhCcHh---
Confidence 98877632210 000 000110000000 0000 0111124456888999999999888875321
Q ss_pred hhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEec-ccccCCHHH
Q 043397 345 ASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITR-LVAQKGLHL 423 (596)
Q Consensus 345 ~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGr-l~~~KGi~~ 423 (596)
+ ..++.+||||+|.+.|.|.... ....+....+. ++.++|+|+|| +.++||++.
T Consensus 175 ---~---~~ki~vI~ngvd~~~f~~~~~~-----------------~~~~~~~~~~~--~~~~~i~~vgR~l~~~Kg~~~ 229 (396)
T cd03818 175 ---L---RSRISVIHDGIDTDRLRPDPQA-----------------RLRLPNGRVLT--PGDEVITFVARNLEPYRGFHV 229 (396)
T ss_pred ---h---ccceEEeCCCccccccCCCchh-----------------hhcccccccCC--CCCeEEEEECCCcccccCHHH
Confidence 1 4789999999999888765211 01111222232 56788999998 999999999
Q ss_pred HHHHHHHHHH--cCCEEEEEecCCC--Cc----chHHHHHHHHHcCC---CCcEEEEeccCHHHHHHHHHhCCEEEEcCC
Q 043397 424 ITHAIKRAEE--LGGQMILLGNSPV--HW----VQKDFEDLANLHNK---GTSTRILLMYSEELSHMLYAAADIVLVPSI 492 (596)
Q Consensus 424 ll~A~~~l~~--~~~~lvIvG~~~~--g~----~~~~l~~~~~~~~~---~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~ 492 (596)
+++|+.++.+ ++++|+|+|+... |. .....+++.++++. .++|+|+|.++.+++..+|+.||++++||.
T Consensus 230 ll~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v~~s~ 309 (396)
T cd03818 230 FMRALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYLTY 309 (396)
T ss_pred HHHHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEEEcCc
Confidence 9999999865 6899999997210 00 01123333333332 468999999999999999999999999999
Q ss_pred CCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 043397 493 YEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKI 572 (596)
Q Consensus 493 ~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~ 572 (596)
.|++|++++||||||+|||+++.||+.|++.+ +.+|+++++.|+++++++|.++++ +++.+.+|++++
T Consensus 310 ~e~~~~~llEAmA~G~PVIas~~~g~~e~i~~--------~~~G~lv~~~d~~~la~~i~~ll~----~~~~~~~l~~~a 377 (396)
T cd03818 310 PFVLSWSLLEAMACGCLVVGSDTAPVREVITD--------GENGLLVDFFDPDALAAAVIELLD----DPARRARLRRAA 377 (396)
T ss_pred ccccchHHHHHHHCCCCEEEcCCCCchhhccc--------CCceEEcCCCCHHHHHHHHHHHHh----CHHHHHHHHHHH
Confidence 99999999999999999999999999999988 789999999999999999999998 999999998766
Q ss_pred HH---hcCCHHHHHHHHHH
Q 043397 573 ME---NDNSWNNAAGKYME 588 (596)
Q Consensus 573 ~~---~~fs~~~~~~~~~~ 588 (596)
.+ ++|||+.++++|++
T Consensus 378 r~~~~~~fs~~~~~~~~~~ 396 (396)
T cd03818 378 RRTALRYDLLSVCLPRQLA 396 (396)
T ss_pred HHHHHHhccHHHHHHHHhC
Confidence 54 67999999999863
No 24
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=1.4e-37 Score=329.89 Aligned_cols=368 Identities=17% Similarity=0.158 Sum_probs=254.7
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeC
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVS 188 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (596)
||||++.+.+ ..||.++++.+||++|+++||+|+|+|+........ .. ..+
T Consensus 1 mkIl~~~~~~----~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~--~~-----------------------~~~ 51 (392)
T cd03805 1 LRVAFIHPDL----GIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHCF--EE-----------------------TKD 51 (392)
T ss_pred CeEEEECCCC----CCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhcc--hh-----------------------ccC
Confidence 8999998665 469999999999999999999999999643221100 00 011
Q ss_pred -CeEEEEEcC--CccccCCCcccCCChhhHHHHHHHHHHHHHHH---HhhCCCCcEEEEcCCccchHHHHHHHHhhhccC
Q 043397 189 -SIPVIFIEP--SNQFFKGKNVYGGSYNELEAYLFFSRACLEWM---QVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSL 262 (596)
Q Consensus 189 -gv~v~~~~~--~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l---~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~ 262 (596)
++.++.+.. +..++. ....+..+.+.....+ .....++||||+|++..+ ++.. .. .
T Consensus 52 ~~~~i~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~-~~~~-~~------~ 113 (392)
T cd03805 52 GTLPVRVRGDWLPRSIFG----------RFHILCAYLRMLYLALYLLLLPDEKYDVFIVDQVSAC-VPLL-KL------F 113 (392)
T ss_pred CeeEEEEEeEEEcchhhH----------hHHHHHHHHHHHHHHHHHHhcccCCCCEEEEcCcchH-HHHH-HH------h
Confidence 133333221 001110 0111111111111111 122468999999965432 2221 11 2
Q ss_pred CCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcc
Q 043397 263 KKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSG 342 (596)
Q Consensus 263 ~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g 342 (596)
.+.|+++++|.... .... ..+....++... ...+.+.+++.+|.|+++|+..++.+...
T Consensus 114 ~~~~~i~~~h~~~~--~~~~----~~~~~~~~~~~~--------------~~~~e~~~~~~ad~ii~~s~~~~~~~~~~- 172 (392)
T cd03805 114 SPSKILFYCHFPDQ--LLAQ----RGSLLKRLYRKP--------------FDWLEEFTTGMADKIVVNSNFTASVFKKT- 172 (392)
T ss_pred cCCcEEEEEecChH--HhcC----CCcHHHHHHHHH--------------HHHHHHHHhhCceEEEEcChhHHHHHHHH-
Confidence 24899999994321 1000 001111111110 11234456778999999999888875421
Q ss_pred hhhhhhhcc-CCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCH
Q 043397 343 WLASVLITH-RDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGL 421 (596)
Q Consensus 343 ~l~~~~~~~-~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi 421 (596)
+... ..++.+|+||+|.+.+.+..... ..+..... ++.++++++||+.+.||+
T Consensus 173 -----~~~~~~~~~~vi~n~vd~~~~~~~~~~~-------------------~~~~~~~~--~~~~~i~~~grl~~~Kg~ 226 (392)
T cd03805 173 -----FPSLAKNPREVVYPCVDTDSFESTSEDP-------------------DPGLLIPK--SGKKTFLSINRFERKKNI 226 (392)
T ss_pred -----hcccccCCcceeCCCcCHHHcCcccccc-------------------cccccccC--CCceEEEEEeeecccCCh
Confidence 2222 33446999999988776542110 11112222 567899999999999999
Q ss_pred HHHHHHHHHHHH-----cCCEEEEEecCCCCcc--------hHHHHHHHHH-cCCCCcEEEEeccCHHHHHHHHHhCCEE
Q 043397 422 HLITHAIKRAEE-----LGGQMILLGNSPVHWV--------QKDFEDLANL-HNKGTSTRILLMYSEELSHMLYAAADIV 487 (596)
Q Consensus 422 ~~ll~A~~~l~~-----~~~~lvIvG~~~~g~~--------~~~l~~~~~~-~~~~~~V~~~g~~~~~~l~~~~a~aDi~ 487 (596)
+.+++|++++.+ ++++|+|+|+ |+. .+.+++++++ +++.++|.|+|+++++++..+|++||++
T Consensus 227 ~~ll~a~~~l~~~~~~~~~~~l~i~G~---~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~ad~~ 303 (392)
T cd03805 227 ALAIEAFAILKDKLAEFKNVRLVIAGG---YDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSSARAL 303 (392)
T ss_pred HHHHHHHHHHHhhcccccCeEEEEEcC---CCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhhCeEE
Confidence 999999999865 3789999998 432 4778888888 8988999999999999999999999999
Q ss_pred EEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHH
Q 043397 488 LVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNR 567 (596)
Q Consensus 488 l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~ 567 (596)
++||..|+||++++|||+||+|||+++.||..|++.+ +.+|+++++ |+++++++|.++++ +++.+.+
T Consensus 304 l~~s~~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~--------~~~g~~~~~-~~~~~a~~i~~l~~----~~~~~~~ 370 (392)
T cd03805 304 LYTPSNEHFGIVPLEAMYAGKPVIACNSGGPLETVVD--------GETGFLCEP-TPEEFAEAMLKLAN----DPDLADR 370 (392)
T ss_pred EECCCcCCCCchHHHHHHcCCCEEEECCCCcHHHhcc--------CCceEEeCC-CHHHHHHHHHHHHh----ChHHHHH
Confidence 9999999999999999999999999999999999988 679999976 99999999999998 8888888
Q ss_pred HHHHHHH---hcCCHHHHHHHH
Q 043397 568 IVQKIME---NDNSWNNAAGKY 586 (596)
Q Consensus 568 ~~~~~~~---~~fs~~~~~~~~ 586 (596)
|++++.+ ++|||+.+++++
T Consensus 371 ~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 371 MGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred HHHHHHHHHHHhcCHHHHhhhC
Confidence 8876543 789999998864
No 25
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=3.1e-37 Score=327.37 Aligned_cols=371 Identities=22% Similarity=0.293 Sum_probs=267.0
Q ss_pred cccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCCeEEEEEcCCcccc
Q 043397 123 KVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSSIPVIFIEPSNQFF 202 (596)
Q Consensus 123 ~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~~~~ 202 (596)
..||.++++.+|+++|.++||+|+|++.......... ....+++.++.++......
T Consensus 19 ~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~ 74 (398)
T cd03800 19 DTGGQNVYVLELARALARLGHEVDIFTRRIDDALPPI------------------------VELAPGVRVVRVPAGPAEY 74 (398)
T ss_pred CCCceeehHHHHHHHHhccCceEEEEEecCCcccCCc------------------------cccccceEEEecccccccC
Confidence 5799999999999999999999999985433211100 0112466666655211111
Q ss_pred CCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchh
Q 043397 203 KGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQ 282 (596)
Q Consensus 203 ~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~ 282 (596)
.....+ ......|...+...++....+||+||+|.+..+..+..+.. ..++|+|++.|+.........
T Consensus 75 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~------~~~~~~i~~~h~~~~~~~~~~ 142 (398)
T cd03800 75 LPKEEL------WPYLDEFADDLLRFLRREGGRPDLIHAHYWDSGLVALLLAR------RLGIPLVHTFHSLGAVKRRHL 142 (398)
T ss_pred CChhhc------chhHHHHHHHHHHHHHhcCCCccEEEEecCccchHHHHHHh------hcCCceEEEeecccccCCccc
Confidence 000000 01112244455555554334899999998776665555433 358999999997653211000
Q ss_pred hhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCC
Q 043397 283 EQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGI 362 (596)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGi 362 (596)
..... +.. .......+..++.+|.++++|+..++.+... +..+..++.+|+||+
T Consensus 143 ------~~~~~-~~~-------------~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~------~~~~~~~~~vi~ng~ 196 (398)
T cd03800 143 ------GAADT-YEP-------------ARRIEAEERLLRAADRVIASTPQEAEELYSL------YGAYPRRIRVVPPGV 196 (398)
T ss_pred ------ccccc-cch-------------hhhhhHHHHHHhhCCEEEEcCHHHHHHHHHH------ccccccccEEECCCC
Confidence 00000 000 0122334556788999999999888886533 233456799999999
Q ss_pred CCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHH--cCCEEEE
Q 043397 363 DTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--LGGQMIL 440 (596)
Q Consensus 363 d~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~~~~lvI 440 (596)
|.+.|.+.... ...++.++.. +++++|+|+||+.+.||++.+++|+..+.+ ++++|+|
T Consensus 197 ~~~~~~~~~~~------------------~~~~~~~~~~--~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i 256 (398)
T cd03800 197 DLERFTPYGRA------------------EARRARLLRD--PDKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVI 256 (398)
T ss_pred Cccceecccch------------------hhHHHhhccC--CCCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEE
Confidence 98877654211 0112333443 567899999999999999999999999875 5789999
Q ss_pred EecCCCC---cchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC
Q 043397 441 LGNSPVH---WVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG 517 (596)
Q Consensus 441 vG~~~~g---~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg 517 (596)
+|+.... .....++++++++++.++|.|+|+++.+++..+|+.||++++||..|++|++++|||++|+|+|+++.+|
T Consensus 257 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~ 336 (398)
T cd03800 257 VGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVGG 336 (398)
T ss_pred EECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCCCC
Confidence 9982111 1234467788888888899999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH---hcCCHHHHHHHHH
Q 043397 518 LADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME---NDNSWNNAAGKYM 587 (596)
Q Consensus 518 ~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~ 587 (596)
..+++.+ +.+|+++++.|+++++++|.++++ +++.+.+|++++.+ ++|||+.++++|+
T Consensus 337 ~~e~i~~--------~~~g~~~~~~~~~~l~~~i~~l~~----~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~ 397 (398)
T cd03800 337 PRDIVVD--------GVTGLLVDPRDPEALAAALRRLLT----DPALRRRLSRAGLRRARARYTWERVAARLL 397 (398)
T ss_pred HHHHccC--------CCCeEEeCCCCHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 9999988 679999999999999999999998 89999999876654 7999999999986
No 26
>PRK10125 putative glycosyl transferase; Provisional
Probab=100.00 E-value=5.1e-37 Score=324.67 Aligned_cols=375 Identities=12% Similarity=0.099 Sum_probs=241.1
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeC
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVS 188 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (596)
||||+|...+ ..||.|+.+.+|++.+.++||+|.++............ ..
T Consensus 1 mkil~i~~~l----~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~~--------------------------~~ 50 (405)
T PRK10125 1 MNILQFNVRL----AEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVS--------------------------HQ 50 (405)
T ss_pred CeEEEEEeee----cCCchhHHHHHHHHHHHhcCCeEEEEEecCCCcccccc--------------------------cC
Confidence 8999998766 67999999999999999999999998743222111000 01
Q ss_pred CeE-EEEEcCCccccCCCcccCCChhhHHH------HHHH-HHHHHHHHHhhCCCCcEEEEcCCccchHHHH-HHHHhh-
Q 043397 189 SIP-VIFIEPSNQFFKGKNVYGGSYNELEA------YLFF-SRACLEWMQVTGVQPDIIHVHEWQIGALPLL-YWDMYQ- 258 (596)
Q Consensus 189 gv~-v~~~~~~~~~~~~~~~y~~~~~~~~~------~~~f-~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~-~~~~~~- 258 (596)
+++ ++.+.+... .+ -.+.. ..++ ..+..+++.. ..+|||||.|..+.+++... +....+
T Consensus 51 ~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~pDviHlH~~~~~~~~~~~l~~~~~~ 119 (405)
T PRK10125 51 NYPQVIKHTPRMT------AM----ANIALFRLFNRDLFGNFNELYRTITR-TPGPVVLHFHVLHSYWLNLKSVVRFCEK 119 (405)
T ss_pred CcceEEEecccHH------HH----HHHHHHHhcchhhcchHHHHHHHHhh-ccCCCEEEEecccCceecHHHHHHHHhh
Confidence 111 111111000 00 00000 0001 1222233322 47999999997776544332 111000
Q ss_pred -hccCCCCcEEEEEcCCCC-CCcchhh-----hhhhcCCCchh--hhh-----hhhhccccccCCCcccchhhchhcccc
Q 043397 259 -SLSLKKPRIVLTIHNMEH-YGECRQE-----QLSKCGLDGSI--YAS-----VEKAIDDRTIGHNPERLSLLKGGIVYS 324 (596)
Q Consensus 259 -~~~~~~~pvv~tiH~~~~-~~~~~~~-----~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~a 324 (596)
.....++|+|||+||+++ .+.|... ....|+.+..+ |.. ..+.+. .+....+...+.+
T Consensus 120 ~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~Cp~l~~~~~~~~d~~~~~~~--------~k~~~~~~~~~~~ 191 (405)
T PRK10125 120 VKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCPTLNNYPPVKVDRAHQLVA--------GKRQLFREMLALG 191 (405)
T ss_pred hhcccCCCCEEEecccccccCCCcCCCcccccccccCCCCCCccCCCCCccchHHHHHH--------HHHHHHHHHhhcC
Confidence 112457899999999996 4444431 12223333222 111 001000 1112233334456
Q ss_pred CeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCC
Q 043397 325 NAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEG 404 (596)
Q Consensus 325 d~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~ 404 (596)
+.++++|+..++++.. .++ ..++.+||||+|++.+.+..+. ...+ .+ +
T Consensus 192 ~~iV~~S~~l~~~~~~------~~~--~~~i~vI~NGid~~~~~~~~~~------------------~~~~----~~--~ 239 (405)
T PRK10125 192 CQFISPSQHVADAFNS------LYG--PGRCRIINNGIDMATEAILAEL------------------PPVR----ET--Q 239 (405)
T ss_pred cEEEEcCHHHHHHHHH------HcC--CCCEEEeCCCcCcccccccccc------------------cccc----cC--C
Confidence 8999999999888542 222 4689999999997533221100 0000 01 4
Q ss_pred CccEEEEEecc--cccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEecc-CHHHHHHHH
Q 043397 405 TVPLVVCITRL--VAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMY-SEELSHMLY 481 (596)
Q Consensus 405 ~~~~il~iGrl--~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~-~~~~l~~~~ 481 (596)
++++|+++|+. .+.||++.+++|+..+. ++++|+|+|+ |+... .++|.++|+. +.+++..+|
T Consensus 240 ~~~~il~v~~~~~~~~Kg~~~li~A~~~l~-~~~~L~ivG~---g~~~~-----------~~~v~~~g~~~~~~~l~~~y 304 (405)
T PRK10125 240 GKPKIAVVAHDLRYDGKTDQQLVREMMALG-DKIELHTFGK---FSPFT-----------AGNVVNHGFETDKRKLMSAL 304 (405)
T ss_pred CCCEEEEEEeccccCCccHHHHHHHHHhCC-CCeEEEEEcC---CCccc-----------ccceEEecCcCCHHHHHHHH
Confidence 67789999994 47899999999998874 4789999998 54211 2468899976 567899999
Q ss_pred HhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCC
Q 043397 482 AAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDK 561 (596)
Q Consensus 482 a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~ 561 (596)
++||++|+||.+|+||++++||||||+|||+|++||++|++.+ .+|++++++|+++|++.+...+. +
T Consensus 305 ~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG~~Eiv~~---------~~G~lv~~~d~~~La~~~~~~~~----~ 371 (405)
T PRK10125 305 NQMDALVFSSRVDNYPLILCEALSIGVPVIATHSDAAREVLQK---------SGGKTVSEEEVLQLAQLSKPEIA----Q 371 (405)
T ss_pred HhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCCChHHhEeC---------CcEEEECCCCHHHHHhccCHHHH----H
Confidence 9999999999999999999999999999999999999999976 48999999999999986543322 1
Q ss_pred HH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 043397 562 PE---EWNRIVQKIMENDNSWNNAAGKYMEIYNSI 593 (596)
Q Consensus 562 ~~---~~~~~~~~~~~~~fs~~~~~~~~~~iy~~l 593 (596)
.. .+.. +++..+++|||+.++++|+++|+++
T Consensus 372 ~~~~~~~~~-~r~~~~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 372 AVFGTTLAE-FSQRSRAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred HhhhhHHHH-HHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 11 1122 3444457899999999999999874
No 27
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=100.00 E-value=1.9e-36 Score=313.66 Aligned_cols=331 Identities=20% Similarity=0.182 Sum_probs=242.5
Q ss_pred eeEEEEeecccc--cccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeee
Q 043397 109 MHIIHITAEMAP--IAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGV 186 (596)
Q Consensus 109 mkIl~is~~~~P--~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (596)
|||+++++.+.| ....||.++++.+|+++|.++||+|+++++........
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~---------------------------- 52 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAP---------------------------- 52 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccc----------------------------
Confidence 899999998743 33689999999999999999999999999654322100
Q ss_pred eCCeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCc
Q 043397 187 VSSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPR 266 (596)
Q Consensus 187 ~~gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~p 266 (596)
.....+....... . ............+.+.++ ..+|||||+|++..... .. +..++|
T Consensus 53 -----~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~--~~~~Divh~~~~~~~~~--~~-------~~~~~~ 109 (335)
T cd03802 53 -----LVPVVPEPLRLDA---P----GRDRAEAEALALAERALA--AGDFDIVHNHSLHLPLP--FA-------RPLPVP 109 (335)
T ss_pred -----eeeccCCCccccc---c----hhhHhhHHHHHHHHHHHh--cCCCCEEEecCcccchh--hh-------cccCCC
Confidence 0000000000000 0 000011122233333433 36899999998766544 11 146889
Q ss_pred EEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhh
Q 043397 267 IVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLAS 346 (596)
Q Consensus 267 vv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~ 346 (596)
+|+++|+....... . ........+.++++|+..++....
T Consensus 110 ~v~~~h~~~~~~~~------------~-----------------------~~~~~~~~~~~~~~s~~~~~~~~~------ 148 (335)
T cd03802 110 VVTTLHGPPDPELL------------K-----------------------LYYAARPDVPFVSISDAQRRPWPP------ 148 (335)
T ss_pred EEEEecCCCCcccc------------h-----------------------HHHhhCcCCeEEEecHHHHhhccc------
Confidence 99999977642110 0 111234468899999887776321
Q ss_pred hhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHH
Q 043397 347 VLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITH 426 (596)
Q Consensus 347 ~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~ 426 (596)
..++.+||||+|.+.|.+.. .++..++|+||+.+.||++.+++
T Consensus 149 -----~~~~~vi~ngvd~~~~~~~~--------------------------------~~~~~i~~~Gr~~~~Kg~~~li~ 191 (335)
T cd03802 149 -----LPWVATVHNGIDLDDYPFRG--------------------------------PKGDYLLFLGRISPEKGPHLAIR 191 (335)
T ss_pred -----ccccEEecCCcChhhCCCCC--------------------------------CCCCEEEEEEeeccccCHHHHHH
Confidence 26899999999988776431 45678999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcC-CCCcEEEEeccCHHHHHHHHHhCCEEEEcCCC-CCCchHHHHHH
Q 043397 427 AIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHN-KGTSTRILLMYSEELSHMLYAAADIVLVPSIY-EPCGLAQMIGM 504 (596)
Q Consensus 427 A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~-~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~-E~~gl~~lEAm 504 (596)
++++ .+++|+|+|. |...+.+....++.. +.++|.|+|+++++++..+|+.+|++++||.+ |+||++++|||
T Consensus 192 ~~~~---~~~~l~i~G~---~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAm 265 (335)
T cd03802 192 AARR---AGIPLKLAGP---VSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAM 265 (335)
T ss_pred HHHh---cCCeEEEEeC---CCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHH
Confidence 9865 4799999999 776666666665543 46789999999999999999999999999985 99999999999
Q ss_pred hcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCHHHHHH
Q 043397 505 RYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIMENDNSWNNAAG 584 (596)
Q Consensus 505 a~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 584 (596)
+||+|||+++.||..|++.+ +.+|+++++ +++++++|.++.+ ... +..++..+++|||+.+++
T Consensus 266 a~G~PvI~~~~~~~~e~i~~--------~~~g~l~~~--~~~l~~~l~~l~~----~~~---~~~~~~~~~~~s~~~~~~ 328 (335)
T cd03802 266 ACGTPVIAFRRGAVPEVVED--------GVTGFLVDS--VEELAAAVARADR----LDR---AACRRRAERRFSAARMVD 328 (335)
T ss_pred hcCCCEEEeCCCCchhheeC--------CCcEEEeCC--HHHHHHHHHHHhc----cHH---HHHHHHHHHhCCHHHHHH
Confidence 99999999999999999988 679999985 9999999999875 321 223444557999999999
Q ss_pred HHHHHHH
Q 043397 585 KYMEIYN 591 (596)
Q Consensus 585 ~~~~iy~ 591 (596)
+|+++|+
T Consensus 329 ~~~~~y~ 335 (335)
T cd03802 329 DYLALYR 335 (335)
T ss_pred HHHHHhC
Confidence 9999985
No 28
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=1.1e-36 Score=320.81 Aligned_cols=357 Identities=17% Similarity=0.172 Sum_probs=249.2
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCC
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSS 189 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (596)
||++++..+ ..||+++++.+++++|.+.||+|+++++..........+.... ...|
T Consensus 1 ki~~~~~~~----~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~--------------------~~~g 56 (372)
T cd03792 1 KVLHVNSTP----YGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHN--------------------ALQG 56 (372)
T ss_pred CeEEEeCCC----CCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhH--------------------hhcC
Confidence 689998765 4699999999999999999999999986432210000000000 0011
Q ss_pred eEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHH--hhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcE
Q 043397 190 IPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQ--VTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRI 267 (596)
Q Consensus 190 v~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~--~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pv 267 (596)
..+ .++ .... ..+.......+. ....+|||||+|++....++.... ..++|+
T Consensus 57 ~~~-~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~Dvv~~h~~~~~~~~~~~~-------~~~~~~ 110 (372)
T cd03792 57 ADI-ELS---------------EEEK---EIYLEWNEENAERPLLDLDADVVVIHDPQPLALPLFKK-------KRGRPW 110 (372)
T ss_pred CCC-CCC---------------HHHH---HHHHHHHHHHhccccccCCCCEEEECCCCchhHHHhhh-------cCCCeE
Confidence 111 111 0001 111111111111 123689999999876433222211 237899
Q ss_pred EEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhh
Q 043397 268 VLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASV 347 (596)
Q Consensus 268 v~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~ 347 (596)
|++.|+...... ... +.+.+..+..+|.+++.|+.+... +
T Consensus 111 i~~~H~~~~~~~------------~~~-------------------~~~~~~~~~~~d~~i~~~~~~~~~----~----- 150 (372)
T cd03792 111 IWRCHIDLSSPN------------RRV-------------------WDFLQPYIEDYDAAVFHLPEYVPP----Q----- 150 (372)
T ss_pred EEEeeeecCCCc------------HHH-------------------HHHHHHHHHhCCEEeecHHHhcCC----C-----
Confidence 999997542110 000 112233455688888888433222 1
Q ss_pred hhccCCcEEEeeCCCCCCC-cCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHH
Q 043397 348 LITHRDKYFGILNGIDTVI-WNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITH 426 (596)
Q Consensus 348 ~~~~~~ki~vI~nGid~~~-~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~ 426 (596)
....++ +||||+|... +.... .......++++++++ +++++|+++||+.++||++.+++
T Consensus 151 --~~~~~~-vipngvd~~~~~~~~~---------------~~~~~~~~~~~~~~~--~~~~~i~~vgrl~~~Kg~~~ll~ 210 (372)
T cd03792 151 --VPPRKV-IIPPSIDPLSGKNREL---------------SPADIEYILEKYGID--PERPYITQVSRFDPWKDPFGVID 210 (372)
T ss_pred --CCCceE-EeCCCCCCCccccCCC---------------CHHHHHHHHHHhCCC--CCCcEEEEEeccccccCcHHHHH
Confidence 123445 9999999642 11110 011244567778886 78899999999999999999999
Q ss_pred HHHHHHH--cCCEEEEEecCCCCcc-----hHHHHHHHHHcCCCCcEEEEecc--CHHHHHHHHHhCCEEEEcCCCCCCc
Q 043397 427 AIKRAEE--LGGQMILLGNSPVHWV-----QKDFEDLANLHNKGTSTRILLMY--SEELSHMLYAAADIVLVPSIYEPCG 497 (596)
Q Consensus 427 A~~~l~~--~~~~lvIvG~~~~g~~-----~~~l~~~~~~~~~~~~V~~~g~~--~~~~l~~~~a~aDi~l~PS~~E~~g 497 (596)
|++.+.+ ++++|+|+|+ |+. .+.++++.++.+..++|.|+|.. +++++..+|++||++++||.+|+||
T Consensus 211 a~~~l~~~~~~~~l~i~G~---g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g 287 (372)
T cd03792 211 AYRKVKERVPDPQLVLVGS---GATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFG 287 (372)
T ss_pred HHHHHHhhCCCCEEEEEeC---CCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCC
Confidence 9998865 5799999998 532 23456666567777889999986 8999999999999999999999999
Q ss_pred hHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH---
Q 043397 498 LAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME--- 574 (596)
Q Consensus 498 l~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~--- 574 (596)
++++|||+||+|+|+++.||+.+++.+ +.+|++++ +.++++.+|.++++ +++.+++|++++.+
T Consensus 288 ~~~lEA~a~G~Pvv~s~~~~~~~~i~~--------~~~g~~~~--~~~~~a~~i~~ll~----~~~~~~~~~~~a~~~~~ 353 (372)
T cd03792 288 LTVTEALWKGKPVIAGPVGGIPLQIED--------GETGFLVD--TVEEAAVRILYLLR----DPELRRKMGANAREHVR 353 (372)
T ss_pred HHHHHHHHcCCCEEEcCCCCchhhccc--------CCceEEeC--CcHHHHHHHHHHHc----CHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988 78999987 57788999999998 88999999876654
Q ss_pred hcCCHHHHHHHHHHHHHHH
Q 043397 575 NDNSWNNAAGKYMEIYNSI 593 (596)
Q Consensus 575 ~~fs~~~~~~~~~~iy~~l 593 (596)
++|||+.++++|+++|+++
T Consensus 354 ~~~s~~~~~~~~~~~~~~~ 372 (372)
T cd03792 354 ENFLITRHLKDYLYLISKL 372 (372)
T ss_pred HHcCHHHHHHHHHHHHHhC
Confidence 6899999999999999874
No 29
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=4.3e-36 Score=314.35 Aligned_cols=358 Identities=19% Similarity=0.183 Sum_probs=249.5
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCC
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSS 189 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (596)
||++|+..++|. ..||.++++.+++++|.++||+|+|+++....... .....|
T Consensus 1 ~i~~i~~~~~~~-~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~--------------------------~~~~~~ 53 (363)
T cd04955 1 KIAIIGTRGIPA-KYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQK--------------------------ETEYNG 53 (363)
T ss_pred CeEEEecCcCCc-ccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCc--------------------------ccccCC
Confidence 689997765554 67999999999999999999999999965332211 011357
Q ss_pred eEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEE
Q 043397 190 IPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVL 269 (596)
Q Consensus 190 v~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~ 269 (596)
++++.++...... ..........+...+. ...++|+||...... .+...... ..+.|+++
T Consensus 54 i~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~--~~~~~~~~-----~~~~~~v~ 113 (363)
T cd04955 54 VRLIHIPAPEIGG------------LGTIIYDILAILHALF-VKRDIDHVHALGPAI--APFLPLLR-----LKGKKVVV 113 (363)
T ss_pred ceEEEcCCCCccc------------hhhhHHHHHHHHHHHh-ccCCeEEEEecCccH--HHHHHHHH-----hcCCCEEE
Confidence 7777766221000 0001111111122221 124455555443222 22211111 24889999
Q ss_pred EEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhh
Q 043397 270 TIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLI 349 (596)
Q Consensus 270 tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~ 349 (596)
++|+..+.... .. .....++ ..+.+.+++.+|.|+++|+..++.+... ++
T Consensus 114 ~~h~~~~~~~~----~~--~~~~~~~------------------~~~~~~~~~~ad~ii~~s~~~~~~~~~~------~~ 163 (363)
T cd04955 114 NMDGLEWKRAK----WG--RPAKRYL------------------KFGEKLAVKFADRLIADSPGIKEYLKEK------YG 163 (363)
T ss_pred EccCcceeecc----cc--cchhHHH------------------HHHHHHHHhhccEEEeCCHHHHHHHHHh------cC
Confidence 99986532110 00 0000011 1122345677999999999888886321 22
Q ss_pred ccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHH
Q 043397 350 THRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIK 429 (596)
Q Consensus 350 ~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~ 429 (596)
. .. .+||||+|...+.+. ....+.+++ .+...++|+||+.+.||++.+++|+.
T Consensus 164 ~--~~-~~i~ngv~~~~~~~~---------------------~~~~~~~~~---~~~~~i~~~G~~~~~Kg~~~li~a~~ 216 (363)
T cd04955 164 R--DS-TYIPYGADHVVSSEE---------------------DEILKKYGL---EPGRYYLLVGRIVPENNIDDLIEAFS 216 (363)
T ss_pred C--CC-eeeCCCcChhhcchh---------------------hhhHHhcCC---CCCcEEEEEecccccCCHHHHHHHHH
Confidence 2 22 899999998765431 112234444 34457889999999999999999999
Q ss_pred HHHHcCCEEEEEecCCCCcchHHHHHHHH-HcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCC-CCCchHHHHHHhcC
Q 043397 430 RAEELGGQMILLGNSPVHWVQKDFEDLAN-LHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIY-EPCGLAQMIGMRYG 507 (596)
Q Consensus 430 ~l~~~~~~lvIvG~~~~g~~~~~l~~~~~-~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~-E~~gl~~lEAma~G 507 (596)
++.+ +++|+|+|+ |+....+.+.++ +++..++|+|+|+++++++..+|++||++++||.. |++|++++|||+||
T Consensus 217 ~l~~-~~~l~ivG~---~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G 292 (363)
T cd04955 217 KSNS-GKKLVIVGN---ADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYG 292 (363)
T ss_pred hhcc-CceEEEEcC---CCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcC
Confidence 8865 899999999 655555555544 67778899999999999999999999999999998 99999999999999
Q ss_pred CceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH---hcCCHHHHHH
Q 043397 508 AVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME---NDNSWNNAAG 584 (596)
Q Consensus 508 ~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~---~~fs~~~~~~ 584 (596)
+|||++++|+..|++.+ +|+++++.|. ++++|.++++ +++.+.++++++.+ ++|||+.+++
T Consensus 293 ~PvI~s~~~~~~e~~~~----------~g~~~~~~~~--l~~~i~~l~~----~~~~~~~~~~~~~~~~~~~fs~~~~~~ 356 (363)
T cd04955 293 CPVLASDNPFNREVLGD----------KAIYFKVGDD--LASLLEELEA----DPEEVSAMAKAARERIREKYTWEKIAD 356 (363)
T ss_pred CCEEEecCCccceeecC----------CeeEecCchH--HHHHHHHHHh----CHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999965 7899987665 9999999998 88888888866554 5799999999
Q ss_pred HHHHHHH
Q 043397 585 KYMEIYN 591 (596)
Q Consensus 585 ~~~~iy~ 591 (596)
+|+++|+
T Consensus 357 ~~~~~y~ 363 (363)
T cd04955 357 QYEELYK 363 (363)
T ss_pred HHHHHhC
Confidence 9999985
No 30
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=5e-36 Score=313.35 Aligned_cols=356 Identities=21% Similarity=0.290 Sum_probs=261.7
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCC
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSS 189 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (596)
|||+++..+ ..||.++++.+|+++|.++||+|++++......... .. ..
T Consensus 1 ~il~~~~~~----~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~-~~--------------------------~~ 49 (360)
T cd04951 1 KILYVITGL----GLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKP-PI--------------------------DA 49 (360)
T ss_pred CeEEEecCC----CCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccc-hh--------------------------hc
Confidence 588887665 569999999999999999999999998543221110 00 00
Q ss_pred eEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEE
Q 043397 190 IPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVL 269 (596)
Q Consensus 190 v~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~ 269 (596)
.....+...... ..+......+.++++. .+|||||+|...+..+..+++.. ..+.|++.
T Consensus 50 ~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~--~~pdiv~~~~~~~~~~~~l~~~~-----~~~~~~v~ 108 (360)
T cd04951 50 TIILNLNMSKNP--------------LSFLLALWKLRKILRQ--FKPDVVHAHMFHANIFARLLRLF-----LPSPPLIC 108 (360)
T ss_pred cceEEecccccc--------------hhhHHHHHHHHHHHHh--cCCCEEEEcccchHHHHHHHHhh-----CCCCcEEE
Confidence 000111100000 0011112223333433 68999999987665554444332 45789999
Q ss_pred EEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhh
Q 043397 270 TIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLI 349 (596)
Q Consensus 270 tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~ 349 (596)
+.|+....+. ... ...+.....++.++++|+...+.+...+ .
T Consensus 109 ~~h~~~~~~~--------------~~~------------------~~~~~~~~~~~~~~~~s~~~~~~~~~~~------~ 150 (360)
T cd04951 109 TAHSKNEGGR--------------LRM------------------LAYRLTDFLSDLTTNVSKEALDYFIASK------A 150 (360)
T ss_pred EeeccCchhH--------------HHH------------------HHHHHHhhccCceEEEcHHHHHHHHhcc------C
Confidence 9997653110 000 0111223347888899998888876443 2
Q ss_pred ccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHH
Q 043397 350 THRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIK 429 (596)
Q Consensus 350 ~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~ 429 (596)
.+..++.+||||+|...+.+.. ..+..+++.+++. +++++++|+||+.+.||++.+++++.
T Consensus 151 ~~~~~~~~i~ng~~~~~~~~~~-----------------~~~~~~~~~~~~~--~~~~~~l~~g~~~~~kg~~~li~a~~ 211 (360)
T cd04951 151 FNANKSFVVYNGIDTDRFRKDP-----------------ARRLKIRNALGVK--NDTFVILAVGRLVEAKDYPNLLKAFA 211 (360)
T ss_pred CCcccEEEEccccchhhcCcch-----------------HHHHHHHHHcCcC--CCCEEEEEEeeCchhcCcHHHHHHHH
Confidence 3467899999999987765431 1234466777775 67889999999999999999999999
Q ss_pred HHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcC
Q 043397 430 RAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYG 507 (596)
Q Consensus 430 ~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G 507 (596)
++.+ ++++|+|+|+ |+..+.+++.+++++..++|.|.|..++ +..+|+.||++++||..|++|++++|||++|
T Consensus 212 ~l~~~~~~~~l~i~G~---g~~~~~~~~~~~~~~~~~~v~~~g~~~~--~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G 286 (360)
T cd04951 212 KLLSDYLDIKLLIAGD---GPLRATLERLIKALGLSNRVKLLGLRDD--IAAYYNAADLFVLSSAWEGFGLVVAEAMACE 286 (360)
T ss_pred HHHhhCCCeEEEEEcC---CCcHHHHHHHHHhcCCCCcEEEeccccc--HHHHHHhhceEEecccccCCChHHHHHHHcC
Confidence 9876 4899999999 8888999999999988889999998754 8899999999999999999999999999999
Q ss_pred CceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHH--HHHHhcCCHHHHHHH
Q 043397 508 AVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQ--KIMENDNSWNNAAGK 585 (596)
Q Consensus 508 ~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~--~~~~~~fs~~~~~~~ 585 (596)
+|+|+++.|+..|++.+ +|+++++.|+++++++|.++++. +++....++. +...++|||+.++++
T Consensus 287 ~PvI~~~~~~~~e~i~~----------~g~~~~~~~~~~~~~~i~~ll~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~ 353 (360)
T cd04951 287 LPVVATDAGGVREVVGD----------SGLIVPISDPEALANKIDEILKM---SGEERDIIGARRERIVKKFSINSIVQQ 353 (360)
T ss_pred CCEEEecCCChhhEecC----------CceEeCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999965 89999999999999999999952 5555555554 334579999999999
Q ss_pred HHHHHHH
Q 043397 586 YMEIYNS 592 (596)
Q Consensus 586 ~~~iy~~ 592 (596)
|.++|++
T Consensus 354 ~~~~y~~ 360 (360)
T cd04951 354 WLTLYTG 360 (360)
T ss_pred HHHHhhC
Confidence 9999963
No 31
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=8.9e-36 Score=328.61 Aligned_cols=378 Identities=13% Similarity=0.073 Sum_probs=253.3
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCC------------eEEEEec--c--c--cchhhhhhcccceeeeEEe
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGH------------TVDIMLP--F--Y--ECIQKQEISDLALITTYNS 171 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh------------~V~vi~p--~--~--~~~~~~~~~~~~~~~~~~~ 171 (596)
||+|+.... ..||.++++..|+.+|.+.|+ .+.|++. . . +.+.. ..
T Consensus 283 rIl~vi~sl----~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~-~L----------- 346 (694)
T PRK15179 283 PVLMINGSL----GAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAA-TL----------- 346 (694)
T ss_pred eEEEEeCCC----CCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHH-HH-----------
Confidence 899998776 569999999999999999854 3444432 1 0 01110 00
Q ss_pred ecCCceEEEEEEeeeeCCeEEEEEcCCccccCCCcccCCChhhHHH--------HHHHHHHHHHHHHhhCCCCcEEEEcC
Q 043397 172 YHDGNWVATNAYHGVVSSIPVIFIEPSNQFFKGKNVYGGSYNELEA--------YLFFSRACLEWMQVTGVQPDIIHVHE 243 (596)
Q Consensus 172 ~~~~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~y~~~~~~~~~--------~~~f~~~~~~~l~~~~~~pDVIh~~~ 243 (596)
...|++++.+........ ..+......+.+ .......+.++++. .+|||||+|.
T Consensus 347 --------------~~~Gv~v~~l~~~~~~~~--~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~--~kpDIVH~h~ 408 (694)
T PRK15179 347 --------------ADAGIPVSVYSDMQAWGG--CEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRS--SVPSVVHIWQ 408 (694)
T ss_pred --------------HhCCCeEEEeccCCccCc--ccccccchhhHHHhhhcchhHHHHHHHHHHHHHH--cCCcEEEEeC
Confidence 025677776652211100 000000001111 12233455555554 5899999998
Q ss_pred CccchHHHHHHHHhhhccCCCCcEEE-EEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhcc
Q 043397 244 WQIGALPLLYWDMYQSLSLKKPRIVL-TIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIV 322 (596)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~pvv~-tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (596)
.....+..+... ..++|+|+ +.|+..+. .. ... ....+.. ....+.
T Consensus 409 ~~a~~lg~lAa~------~~gvPvIv~t~h~~~~~-~~-~~~------~~~~~~~-------------------l~~~l~ 455 (694)
T PRK15179 409 DGSIFACALAAL------LAGVPRIVLSVRTMPPV-DR-PDR------YRVEYDI-------------------IYSELL 455 (694)
T ss_pred CcHHHHHHHHHH------HcCCCEEEEEeCCCccc-cc-hhH------HHHHHHH-------------------HHHHHH
Confidence 666555444432 24678766 55654321 00 000 0000000 000112
Q ss_pred c--cCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCC
Q 043397 323 Y--SNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGL 400 (596)
Q Consensus 323 ~--ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l 400 (596)
. ++.+++.|...++.+. +.++.+.+++.+||||||...|.+.... .+...+-....
T Consensus 456 ~~~~~i~Vs~S~~~~~~l~------~~~g~~~~kI~VI~NGVd~~~f~~~~~~----------------~~~~~~~~~~~ 513 (694)
T PRK15179 456 KMRGVALSSNSQFAAHRYA------DWLGVDERRIPVVYNGLAPLKSVQDDAC----------------TAMMAQFDART 513 (694)
T ss_pred hcCCeEEEeCcHHHHHHHH------HHcCCChhHEEEECCCcCHHhcCCCchh----------------hHHHHhhcccc
Confidence 2 3455666666665543 2244567899999999998777543110 00000001112
Q ss_pred CCCCCccEEEEEecccccCCHHHHHHHHHHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHH
Q 043397 401 KSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSH 478 (596)
Q Consensus 401 ~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~ 478 (596)
+ .+.++|+++||+.++||++.+++|+.++.+ ++++|+|+|+ |+..+.++++++++++.++|+|+|+.++ +.
T Consensus 514 ~--~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~---G~~~~~L~~l~~~lgL~~~V~flG~~~d--v~ 586 (694)
T PRK15179 514 S--DARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGG---GPLLESVREFAQRLGMGERILFTGLSRR--VG 586 (694)
T ss_pred C--CCCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEcc---CcchHHHHHHHHHcCCCCcEEEcCCcch--HH
Confidence 2 456789999999999999999999998865 6899999999 9999999999999999999999999865 89
Q ss_pred HHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCH--HHHHHHHHHHHH
Q 043397 479 MLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDE--GSLNWALDRAFR 556 (596)
Q Consensus 479 ~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~--~~la~~i~~ll~ 556 (596)
.+|+.||++++||.+|+||++++|||+||+|||+|++||++|+|.+ +.+|++++++|+ ++++++|.+++.
T Consensus 587 ~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG~~EiV~d--------g~~GlLv~~~d~~~~~La~aL~~ll~ 658 (694)
T PRK15179 587 YWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGGAGEAVQE--------GVTGLTLPADTVTAPDVAEALARIHD 658 (694)
T ss_pred HHHHhcCEEEeccccccchHHHHHHHHcCCeEEEECCCChHHHccC--------CCCEEEeCCCCCChHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998 789999997774 689999988887
Q ss_pred hccCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 043397 557 HFIDKPEEWNRIVQKIMENDNSWNNAAGKYMEIYNS 592 (596)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~iy~~ 592 (596)
....++...+. +++..+++|||+.++++|+++|+.
T Consensus 659 ~l~~~~~l~~~-ar~~a~~~FS~~~~~~~~~~lY~~ 693 (694)
T PRK15179 659 MCAADPGIARK-AADWASARFSLNQMIASTVRCYQM 693 (694)
T ss_pred ChhccHHHHHH-HHHHHHHhCCHHHHHHHHHHHhCC
Confidence 44335444332 344444799999999999999973
No 32
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=100.00 E-value=2.9e-36 Score=315.98 Aligned_cols=347 Identities=13% Similarity=0.098 Sum_probs=248.1
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhc--CCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeee
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSR--GHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGV 186 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~--Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (596)
|||++++..+ | ..||.++++.+++++|.++ ||+|.++++...... .......... .
T Consensus 1 mkI~~~~~~~-~--~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~-~~~~~~~~~~------------------~ 58 (359)
T PRK09922 1 MKIAFIGEAV-S--GFGGMETVISNVINTFEESKINCEMFFFCRNDKMDK-AWLKEIKYAQ------------------S 58 (359)
T ss_pred CeeEEecccc-c--CCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCCh-HHHHhcchhc------------------c
Confidence 8999998754 3 4599999999999999999 899999986533211 0000000000 0
Q ss_pred eCCeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCc
Q 043397 187 VSSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPR 266 (596)
Q Consensus 187 ~~gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~p 266 (596)
...+.+..+ +. ......+.+++++ .+||+||+|+.....+..++.... ....+
T Consensus 59 ~~~~~~~~~-------~~--------------~~~~~~l~~~l~~--~~~Dii~~~~~~~~~~~~~~~~~~----~~~~~ 111 (359)
T PRK09922 59 FSNIKLSFL-------RR--------------AKHVYNFSKWLKE--TQPDIVICIDVISCLYANKARKKS----GKQFK 111 (359)
T ss_pred cccchhhhh-------cc--------------cHHHHHHHHHHHh--cCCCEEEEcCHHHHHHHHHHHHHh----CCCCe
Confidence 000110000 00 0012233344443 689999999754443333332221 12345
Q ss_pred EEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhh
Q 043397 267 IVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLAS 346 (596)
Q Consensus 267 vv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~ 346 (596)
++.+.|...... .... ...+..+|.++++|+..++.+...|
T Consensus 112 ~~~~~h~~~~~~---------------~~~~--------------------~~~~~~~d~~i~~S~~~~~~~~~~~---- 152 (359)
T PRK09922 112 IFSWPHFSLDHK---------------KHAE--------------------CKKITCADYHLAISSGIKEQMMARG---- 152 (359)
T ss_pred EEEEecCccccc---------------chhh--------------------hhhhhcCCEEEEcCHHHHHHHHHcC----
Confidence 666666422100 0000 0012458999999999988876543
Q ss_pred hhhccCCcEEEeeCCCCCCCcC-CCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEeccc--ccCCHHH
Q 043397 347 VLITHRDKYFGILNGIDTVIWN-PATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLV--AQKGLHL 423 (596)
Q Consensus 347 ~~~~~~~ki~vI~nGid~~~~~-p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~--~~KGi~~ 423 (596)
.+..++.+||||+|.+.+. +... ..++++++|+||+. ++||++.
T Consensus 153 ---~~~~ki~vi~N~id~~~~~~~~~~------------------------------~~~~~~i~~~Grl~~~~~k~~~~ 199 (359)
T PRK09922 153 ---ISAQRISVIYNPVEIKTIIIPPPE------------------------------RDKPAVFLYVGRLKFEGQKNVKE 199 (359)
T ss_pred ---CCHHHEEEEcCCCCHHHccCCCcc------------------------------cCCCcEEEEEEEEecccCcCHHH
Confidence 3456899999999965432 2100 13567899999996 4699999
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCH--HHHHHHHHhCCEEEEcCCCCCCchHHH
Q 043397 424 ITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSE--ELSHMLYAAADIVLVPSIYEPCGLAQM 501 (596)
Q Consensus 424 ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~--~~l~~~~a~aDi~l~PS~~E~~gl~~l 501 (596)
+++|+.++.. +++|+|+|+ |+..+.++++++++++.++|.|+|++++ +++..+|+.||++++||.+|+||++++
T Consensus 200 l~~a~~~~~~-~~~l~ivG~---g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~l 275 (359)
T PRK09922 200 LFDGLSQTTG-EWQLHIIGD---GSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLL 275 (359)
T ss_pred HHHHHHhhCC-CeEEEEEeC---CccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHH
Confidence 9999988753 799999999 8889999999999999889999998854 889999999999999999999999999
Q ss_pred HHHhcCCceEEeC-CCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHH--HHHHHHHHHhcCC
Q 043397 502 IGMRYGAVPVVRK-TGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEW--NRIVQKIMENDNS 578 (596)
Q Consensus 502 EAma~G~pvI~s~-~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~--~~~~~~~~~~~fs 578 (596)
||||||+|||+++ .||..|+|.+ +.+|++++++|+++++++|.++++ +++.+ ..+.++ ..+|+
T Consensus 276 EAma~G~Pvv~s~~~~g~~eiv~~--------~~~G~lv~~~d~~~la~~i~~l~~----~~~~~~~~~~~~~--~~~~~ 341 (359)
T PRK09922 276 EAMSYGIPCISSDCMSGPRDIIKP--------GLNGELYTPGNIDEFVGKLNKVIS----GEVKYQHDAIPNS--IERFY 341 (359)
T ss_pred HHHHcCCCEEEeCCCCChHHHccC--------CCceEEECCCCHHHHHHHHHHHHh----CcccCCHHHHHHH--HHHhh
Confidence 9999999999999 8999999988 789999999999999999999998 77643 222232 24799
Q ss_pred HHHHHHHHHHHHHHHh
Q 043397 579 WNNAAGKYMEIYNSIR 594 (596)
Q Consensus 579 ~~~~~~~~~~iy~~l~ 594 (596)
-+...+++.++|..++
T Consensus 342 ~~~~~~~~~~~~~~~~ 357 (359)
T PRK09922 342 EVLYFKNLNNALFSKL 357 (359)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998875
No 33
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=100.00 E-value=9.2e-36 Score=312.79 Aligned_cols=356 Identities=17% Similarity=0.111 Sum_probs=256.8
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCC
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSS 189 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (596)
||+++++.++|. .++++.++++.|. ||+|.+++............ ..+
T Consensus 1 ~~~~~~~~~~~~-----~e~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~-------------------------~~~ 48 (367)
T cd05844 1 RVLIFRPLLLAP-----SETFVRNQAEALR--RFRPVYVGGRRLGPAPLGAL-------------------------AVR 48 (367)
T ss_pred CEEEEeCCCCCC-----chHHHHHHHHhcc--cCCcEEEEeeccCCCCCccc-------------------------cee
Confidence 689999888762 5999999999994 88888887542221110000 011
Q ss_pred eEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEE
Q 043397 190 IPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVL 269 (596)
Q Consensus 190 v~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~ 269 (596)
+.++... ....+ .........+...+..+++ ..+||+||+|....+.....+.+ ..++|+++
T Consensus 49 ~~~~~~~---~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~dvvh~~~~~~~~~~~~~~~------~~~~p~i~ 110 (367)
T cd05844 49 LADLAGG---KAGLR-------LGALRLLTGSAPQLRRLLR--RHRPDLVHAHFGFDGVYALPLAR------RLGVPLVV 110 (367)
T ss_pred eeecccc---hhHHH-------HHHHHhccccccHHHHHHH--hhCCCEEEeccCchHHHHHHHHH------HcCCCEEE
Confidence 1111000 00000 0000001112222333333 36899999996544433333322 35899999
Q ss_pred EEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhh
Q 043397 270 TIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLI 349 (596)
Q Consensus 270 tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~ 349 (596)
+.|+............ .... ....+.+..++.+|.++++|+..++.+...|
T Consensus 111 ~~h~~~~~~~~~~~~~----~~~~------------------~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~------- 161 (367)
T cd05844 111 TFHGFDATTSLALLLR----SRWA------------------LYARRRRRLARRAALFIAVSQFIRDRLLALG------- 161 (367)
T ss_pred EEeCccccccchhhcc----cchh------------------HHHHHHHHHHHhcCEEEECCHHHHHHHHHcC-------
Confidence 9997643211100000 0000 0112334456779999999999998876543
Q ss_pred ccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHH
Q 043397 350 THRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIK 429 (596)
Q Consensus 350 ~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~ 429 (596)
.+..++.+++||+|.+.+.+... ..+.++++|+|++.+.||++.+++|+.
T Consensus 162 ~~~~~i~vi~~g~d~~~~~~~~~------------------------------~~~~~~i~~~G~~~~~K~~~~li~a~~ 211 (367)
T cd05844 162 FPPEKVHVHPIGVDTAKFTPATP------------------------------ARRPPRILFVGRFVEKKGPLLLLEAFA 211 (367)
T ss_pred CCHHHeEEecCCCCHHhcCCCCC------------------------------CCCCcEEEEEEeeccccChHHHHHHHH
Confidence 34678999999999877654311 145678999999999999999999999
Q ss_pred HHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCC------CCCCchHHH
Q 043397 430 RAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSI------YEPCGLAQM 501 (596)
Q Consensus 430 ~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~------~E~~gl~~l 501 (596)
.+.+ ++++|+|+|+ |++.+.++++++++++.++|+|+|.++.+++..+|+.||++++||. .|++|++++
T Consensus 212 ~l~~~~~~~~l~ivG~---g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~ 288 (367)
T cd05844 212 RLARRVPEVRLVIIGD---GPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLL 288 (367)
T ss_pred HHHHhCCCeEEEEEeC---chHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHH
Confidence 9875 5899999999 8888899999999888889999999999999999999999999997 499999999
Q ss_pred HHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH---HhcCC
Q 043397 502 IGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIM---ENDNS 578 (596)
Q Consensus 502 EAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~---~~~fs 578 (596)
|||+||+|||+++.+|..|++.+ +.+|+++++.|+++++++|.++++ +++.+.++++++. +++||
T Consensus 289 EA~a~G~PvI~s~~~~~~e~i~~--------~~~g~~~~~~d~~~l~~~i~~l~~----~~~~~~~~~~~a~~~~~~~~s 356 (367)
T cd05844 289 EAQASGVPVVATRHGGIPEAVED--------GETGLLVPEGDVAALAAALGRLLA----DPDLRARMGAAGRRRVEERFD 356 (367)
T ss_pred HHHHcCCCEEEeCCCCchhheec--------CCeeEEECCCCHHHHHHHHHHHHc----CHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999988 689999999999999999999998 8888888886554 37899
Q ss_pred HHHHHHHHHHH
Q 043397 579 WNNAAGKYMEI 589 (596)
Q Consensus 579 ~~~~~~~~~~i 589 (596)
|+.+++++.++
T Consensus 357 ~~~~~~~l~~i 367 (367)
T cd05844 357 LRRQTAKLEAL 367 (367)
T ss_pred HHHHHHHHhcC
Confidence 99999998763
No 34
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=2.5e-35 Score=307.83 Aligned_cols=341 Identities=18% Similarity=0.172 Sum_probs=247.8
Q ss_pred cccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCCeEEEEEcCCcccc
Q 043397 123 KVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSSIPVIFIEPSNQFF 202 (596)
Q Consensus 123 ~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~~~~ 202 (596)
..||.++++.+|+++|.++||+|.++++....... .. ..|+.++.++....
T Consensus 8 ~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~--~~-------------------------~~~~~~~~~~~~~~-- 58 (355)
T cd03819 8 ESGGVERGTLELARALVERGHRSLVASAGGRLVAE--LE-------------------------AEGSRHIKLPFISK-- 58 (355)
T ss_pred ccCcHHHHHHHHHHHHHHcCCEEEEEcCCCchHHH--HH-------------------------hcCCeEEEcccccc--
Confidence 45999999999999999999999999864321111 00 13444444331100
Q ss_pred CCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchh
Q 043397 203 KGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQ 282 (596)
Q Consensus 203 ~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~ 282 (596)
. ......+...+...++. .+||+||+|+........+... ..++|+++++|+......
T Consensus 59 ---~--------~~~~~~~~~~l~~~~~~--~~~dii~~~~~~~~~~~~~~~~------~~~~~~i~~~h~~~~~~~--- 116 (355)
T cd03819 59 ---N--------PLRILLNVARLRRLIRE--EKVDIVHARSRAPAWSAYLAAR------RTRPPFVTTVHGFYSVNF--- 116 (355)
T ss_pred ---c--------hhhhHHHHHHHHHHHHH--cCCCEEEECCCchhHHHHHHHH------hcCCCEEEEeCCchhhHH---
Confidence 0 00111222333444443 6899999998665544443322 348999999997653110
Q ss_pred hhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCC
Q 043397 283 EQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGI 362 (596)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGi 362 (596)
+.+..++.+|.++++|+..++.+. ..++.+..++.+||||+
T Consensus 117 ---------------------------------~~~~~~~~~~~vi~~s~~~~~~~~------~~~~~~~~k~~~i~ngi 157 (355)
T cd03819 117 ---------------------------------RYNAIMARGDRVIAVSNFIADHIR------ENYGVDPDRIRVIPRGV 157 (355)
T ss_pred ---------------------------------HHHHHHHhcCEEEEeCHHHHHHHH------HhcCCChhhEEEecCCc
Confidence 011224558999999998888864 22445567999999999
Q ss_pred CCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHH--cCCEEEE
Q 043397 363 DTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--LGGQMIL 440 (596)
Q Consensus 363 d~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~~~~lvI 440 (596)
|.+.+.+.... ......++++++.+ ++.++++|+||+.+.||++.+++++..+.+ ++++|+|
T Consensus 158 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~--~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~i 221 (355)
T cd03819 158 DLDRFDPGAVP--------------PERILALAREWPLP--KGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLI 221 (355)
T ss_pred cccccCccccc--------------hHHHHHHHHHcCCC--CCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEE
Confidence 98877654211 01122356666664 677899999999999999999999999977 6899999
Q ss_pred EecCCC-CcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcC-CCCCCchHHHHHHhcCCceEEeCCCCc
Q 043397 441 LGNSPV-HWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPS-IYEPCGLAQMIGMRYGAVPVVRKTGGL 518 (596)
Q Consensus 441 vG~~~~-g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS-~~E~~gl~~lEAma~G~pvI~s~~gg~ 518 (596)
+|.... ..+.+.+.+.+++++..++|.|+|+ .+++..+|++||++++|| ..|++|++++|||++|+|||+++.||.
T Consensus 222 vG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~~ 299 (355)
T cd03819 222 VGDAQGRRFYYAELLELIKRLGLQDRVTFVGH--CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGGA 299 (355)
T ss_pred EECCcccchHHHHHHHHHHHcCCcceEEEcCC--cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCCc
Confidence 998211 1233445567778888889999999 445999999999999999 789999999999999999999999999
Q ss_pred cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH---hcCCHHHH
Q 043397 519 ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME---NDNSWNNA 582 (596)
Q Consensus 519 ~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~---~~fs~~~~ 582 (596)
.|++.+ +.+|+++++.|+++++++|..++.. +++.+.++++++.+ .+|||+++
T Consensus 300 ~e~i~~--------~~~g~~~~~~~~~~l~~~i~~~~~~---~~~~~~~~~~~a~~~~~~~f~~~~~ 355 (355)
T cd03819 300 RETVRP--------GETGLLVPPGDAEALAQALDQILSL---LPEGRAKMFAKARMCVETLFSYDRM 355 (355)
T ss_pred HHHHhC--------CCceEEeCCCCHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHHhhhhccC
Confidence 999988 6799999999999999999766653 78888888866554 88999863
No 35
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=5.7e-35 Score=303.84 Aligned_cols=359 Identities=18% Similarity=0.166 Sum_probs=267.8
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCC
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSS 189 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (596)
||++++..+.+ ||.++++..|+++|.+.||+|.+++............ ..|
T Consensus 1 ~i~~i~~~~~~----gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-------------------------~~~ 51 (365)
T cd03807 1 KVLHVITGLDV----GGAERMLVRLLKGLDRDRFEHVVISLTDRGELGEELE-------------------------EAG 51 (365)
T ss_pred CeEEEEeeccC----ccHHHHHHHHHHHhhhccceEEEEecCcchhhhHHHH-------------------------hcC
Confidence 68999988854 9999999999999999999999998543221111100 135
Q ss_pred eEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEE
Q 043397 190 IPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVL 269 (596)
Q Consensus 190 v~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~ 269 (596)
+.++.+....... ...+...+.++++. .+||+||+|.+.......+.... ..+.++++
T Consensus 52 i~v~~~~~~~~~~---------------~~~~~~~~~~~~~~--~~~div~~~~~~~~~~~~~~~~~-----~~~~~~i~ 109 (365)
T cd03807 52 VPVYCLGKRPGRP---------------DPGALLRLYKLIRR--LRPDVVHTWMYHADLYGGLAARL-----AGVPPVIW 109 (365)
T ss_pred CeEEEEecccccc---------------cHHHHHHHHHHHHh--hCCCEEEeccccccHHHHHHHHh-----cCCCcEEE
Confidence 6665554221100 11122333444432 68999999976655544443322 25889999
Q ss_pred EEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhh
Q 043397 270 TIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLI 349 (596)
Q Consensus 270 tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~ 349 (596)
++|+...... ........ .+.+.....+|.++++|+...+.+...+
T Consensus 110 ~~~~~~~~~~---------~~~~~~~~------------------~~~~~~~~~~~~~i~~s~~~~~~~~~~~------- 155 (365)
T cd03807 110 GIRHSDLDLG---------KKSTRLVA------------------RLRRLLSSFIPLIVANSAAAAEYHQAIG------- 155 (365)
T ss_pred EecCCccccc---------chhHhHHH------------------HHHHHhccccCeEEeccHHHHHHHHHcC-------
Confidence 9998765211 00001111 1122334558889999998888865433
Q ss_pred ccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHH
Q 043397 350 THRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIK 429 (596)
Q Consensus 350 ~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~ 429 (596)
.+..++.+++||+|...+.+... .+...+++++++ ++.++++++||+.+.||++.+++|+.
T Consensus 156 ~~~~~~~vi~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~--~~~~~i~~~G~~~~~K~~~~li~a~~ 216 (365)
T cd03807 156 YPPKKIVVIPNGVDTERFSPDLD-----------------ARARLREELGLP--EDTFLIGIVARLHPQKDHATLLRAAA 216 (365)
T ss_pred CChhheeEeCCCcCHHhcCCccc-----------------chHHHHHhcCCC--CCCeEEEEecccchhcCHHHHHHHHH
Confidence 34678999999999877654421 123445677775 67789999999999999999999999
Q ss_pred HHHH--cCCEEEEEecCCCCcchHHHHHHHH-HcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhc
Q 043397 430 RAEE--LGGQMILLGNSPVHWVQKDFEDLAN-LHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRY 506 (596)
Q Consensus 430 ~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~-~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~ 506 (596)
.+.+ ++++|+|+|. +......+.... ++++.++|.+.|..+ ++..+|+.||++++||..|++|++++|||+|
T Consensus 217 ~l~~~~~~~~l~i~G~---~~~~~~~~~~~~~~~~~~~~v~~~g~~~--~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~ 291 (365)
T cd03807 217 LLLKKFPNARLLLVGD---GPDRANLELLALKELGLEDKVILLGERS--DVPALLNALDVFVLSSLSEGFPNVLLEAMAC 291 (365)
T ss_pred HHHHhCCCeEEEEecC---CcchhHHHHHHHHhcCCCceEEEccccc--cHHHHHHhCCEEEeCCccccCCcHHHHHHhc
Confidence 9866 5799999999 776777777776 788888999999765 4899999999999999999999999999999
Q ss_pred CCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH---hcCCHHHHH
Q 043397 507 GAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME---NDNSWNNAA 583 (596)
Q Consensus 507 G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~---~~fs~~~~~ 583 (596)
|+|+|+++.||..+++.+ +|+++++.|+++++++|.++++ +++.+.++++++.+ ++|||++++
T Consensus 292 g~PvI~~~~~~~~e~~~~----------~g~~~~~~~~~~l~~~i~~l~~----~~~~~~~~~~~~~~~~~~~~s~~~~~ 357 (365)
T cd03807 292 GLPVVATDVGDNAELVGD----------TGFLVPPGDPEALAEAIEALLA----DPALRQALGEAARERIEENFSIEAMV 357 (365)
T ss_pred CCCEEEcCCCChHHHhhc----------CCEEeCCCCHHHHHHHHHHHHh----ChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 999999999999999964 8999999999999999999999 88888888765544 789999999
Q ss_pred HHHHHHHH
Q 043397 584 GKYMEIYN 591 (596)
Q Consensus 584 ~~~~~iy~ 591 (596)
++|.++|+
T Consensus 358 ~~~~~~y~ 365 (365)
T cd03807 358 EAYEELYR 365 (365)
T ss_pred HHHHHHhC
Confidence 99999984
No 36
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=4.2e-35 Score=306.01 Aligned_cols=352 Identities=22% Similarity=0.241 Sum_probs=256.2
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCC
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSS 189 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (596)
|||+++..|+| ..||.+.++.+|+++|.++||+|++++........... ..+
T Consensus 1 kil~i~~~~~p--~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~--------------------------~~~ 52 (357)
T cd03795 1 RVLHVGKFYPP--DRGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRDEE--------------------------RNG 52 (357)
T ss_pred CeeEecCCCCC--CCCcHHHHHHHHHHHHHhCCCceEEEecCCCCcchhhh--------------------------ccC
Confidence 79999999988 47999999999999999999999999865332211110 122
Q ss_pred eEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEE
Q 043397 190 IPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVL 269 (596)
Q Consensus 190 v~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~ 269 (596)
++++.++....... .. +.......+.....+||+||+|............. ..+.|+++
T Consensus 53 ~~~~~~~~~~~~~~----~~-----------~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~------~~~~~~i~ 111 (357)
T cd03795 53 HRVIRAPSLLNVAS----TP-----------FSPSFFKQLKKLAKKADVIHLHFPNPLADLALLLL------PRKKPVVV 111 (357)
T ss_pred ceEEEeeccccccc----cc-----------ccHHHHHHHHhcCCCCCEEEEecCcchHHHHHHHh------ccCceEEE
Confidence 23333321000000 00 01111111112247999999996443222211111 24789999
Q ss_pred EEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhh
Q 043397 270 TIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLI 349 (596)
Q Consensus 270 tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~ 349 (596)
+.|+...... .....+ ..+.+..++.+|.++++|+.+.+.+...+
T Consensus 112 ~~h~~~~~~~----------~~~~~~------------------~~~~~~~~~~~d~vi~~s~~~~~~~~~~~------- 156 (357)
T cd03795 112 HWHSDIVKQK----------LLLKLY------------------RPLQRRFLRRADAIVATSPNYAETSPVLR------- 156 (357)
T ss_pred EEcChhhccc----------hhhhhh------------------hHHHHHHHHhcCEEEeCcHHHHHHHHHhc-------
Confidence 9996432110 000111 12334457779999999999888754321
Q ss_pred ccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHH
Q 043397 350 THRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIK 429 (596)
Q Consensus 350 ~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~ 429 (596)
....++.+||||+|...+.+.... +. ...... .+.++|+|+||+.+.||++.+++|++
T Consensus 157 ~~~~~~~~i~~gi~~~~~~~~~~~-----------------~~---~~~~~~--~~~~~i~~~G~~~~~K~~~~li~a~~ 214 (357)
T cd03795 157 RFRDKVRVIPLGLDPARYPRPDAL-----------------EE---AIWRRA--AGRPFFLFVGRLVYYKGLDVLLEAAA 214 (357)
T ss_pred CCccceEEecCCCChhhcCCcchh-----------------hh---HhhcCC--CCCcEEEEecccccccCHHHHHHHHH
Confidence 223789999999998877554210 00 111222 56789999999999999999999999
Q ss_pred HHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCC--CCCCchHHHHHHhcC
Q 043397 430 RAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSI--YEPCGLAQMIGMRYG 507 (596)
Q Consensus 430 ~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~--~E~~gl~~lEAma~G 507 (596)
++. +++|+|+|+ |+....+++.+++++..++|.|+|+++++++..+|+.||++++||. .|++|++++|||++|
T Consensus 215 ~l~--~~~l~i~G~---g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g 289 (357)
T cd03795 215 ALP--DAPLVIVGE---GPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFG 289 (357)
T ss_pred hcc--CcEEEEEeC---ChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcC
Confidence 985 899999999 8888999999988898899999999999999999999999999996 599999999999999
Q ss_pred CceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH---hcCCHHHHH
Q 043397 508 AVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME---NDNSWNNAA 583 (596)
Q Consensus 508 ~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~---~~fs~~~~~ 583 (596)
+|+|+++.|+..+.+.+ + +.+|+++++.|+++++++|.++++ +++.+.+|++++.+ ++|||+.++
T Consensus 290 ~Pvi~~~~~~~~~~i~~-~------~~~g~~~~~~d~~~~~~~i~~l~~----~~~~~~~~~~~~~~~~~~~~s~~~~~ 357 (357)
T cd03795 290 KPVISTEIGTGGSYVNL-H------GVTGLVVPPGDPAALAEAIRRLLE----DPELRERLGEAARERAEEEFTADRMV 357 (357)
T ss_pred CCEEecCCCCchhHHhh-C------CCceEEeCCCCHHHHHHHHHHHHH----CHHHHHHHHHHHHHHHHHhcchHhhC
Confidence 99999999999998864 1 479999999999999999999999 99999998866654 789999864
No 37
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=4e-35 Score=309.07 Aligned_cols=231 Identities=12% Similarity=0.095 Sum_probs=184.8
Q ss_pred cccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHh--hcC
Q 043397 322 VYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQK--GLG 399 (596)
Q Consensus 322 ~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~--~l~ 399 (596)
..+| +++.|...++.+. +.++.+.+++.+||||+|+..|.|..+. ....++ ..+
T Consensus 338 ~~sd-~v~~s~~v~~~l~------~~lgip~~KI~VIyNGVD~~rf~p~~~~-----------------~~~~r~~~~~~ 393 (578)
T PRK15490 338 PGVD-FMSNNHCVTRHYA------DWLKLEAKHFQVVYNGVLPPSTEPSSEV-----------------PHKIWQQFTQK 393 (578)
T ss_pred ecch-hhhccHHHHHHHH------HHhCCCHHHEEEEeCCcchhhcCccchh-----------------hHHHHHHhhhc
Confidence 3355 6778877777753 3345678999999999999887765211 001122 223
Q ss_pred CCCCCCccEEEEEecccccCCHHHHHHHHHHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHH
Q 043397 400 LKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELS 477 (596)
Q Consensus 400 l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l 477 (596)
++ ++.++|+++||+.++||.+.+++++.++.+ ++++|+|+|+ |+..+.++++++++++.++|+|+|+.+ ++
T Consensus 394 l~--~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVGd---G~~~eeLk~la~elgL~d~V~FlG~~~--Dv 466 (578)
T PRK15490 394 TQ--DADTTIGGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVGD---GDLRAEAQKRAEQLGILERILFVGASR--DV 466 (578)
T ss_pred cC--CCCcEEEEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEeC---chhHHHHHHHHHHcCCCCcEEECCChh--hH
Confidence 33 456889999999999999999999988755 6899999999 999999999999999999999999965 48
Q ss_pred HHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 478 HMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 478 ~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
..+|+.||++++||.+|+||++++|||++|+|||+++.||.+|+|.+ +.+|+++++.|++++++++..+...
T Consensus 467 ~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVVATdvGG~~EiV~d--------G~nG~LVp~~D~~aLa~ai~lA~aL 538 (578)
T PRK15490 467 GYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPAGGSAECFIE--------GVSGFILDDAQTVNLDQACRYAEKL 538 (578)
T ss_pred HHHHHhCCEEEEcccccCccHHHHHHHHhCCCEEEeCCCCcHHHccc--------CCcEEEECCCChhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 7999999999999998887433221
Q ss_pred ccCCHHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHH
Q 043397 558 FIDKPEEWNRIV---QKIMENDNSWNNAAGKYMEIYNS 592 (596)
Q Consensus 558 ~~~~~~~~~~~~---~~~~~~~fs~~~~~~~~~~iy~~ 592 (596)
.. .......|+ ++.++++|||+.++++|.++|..
T Consensus 539 ~~-ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 539 VN-LWRSRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred HH-HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 11 333333444 44455899999999999999975
No 38
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=5.8e-35 Score=304.92 Aligned_cols=369 Identities=20% Similarity=0.208 Sum_probs=257.7
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCC
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSS 189 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (596)
||++++..++| ..||.+.++..++++|.+.||+|+++++........... ..
T Consensus 1 kIl~i~~~~~~--~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~--------------------------~~ 52 (375)
T cd03821 1 KILHVIPSFDP--KYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLVAL--------------------------NG 52 (375)
T ss_pred CeEEEcCCCCc--ccCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchhhc--------------------------cC
Confidence 79999999876 679999999999999999999999999654332111000 00
Q ss_pred eEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCcc-chHHHHHHHHhhhccCCCCcEE
Q 043397 190 IPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQI-GALPLLYWDMYQSLSLKKPRIV 268 (596)
Q Consensus 190 v~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~-~~~~~~~~~~~~~~~~~~~pvv 268 (596)
+.............. .....+.......+.....++|+||+|+... ......... +..++|++
T Consensus 53 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~-----~~~~~~~i 116 (375)
T cd03821 53 VPVKLFSINVAYGLN-----------LARYLFPPSLLAWLRLNIREADIVHVHGLWSYPSLAAARAA-----RKYGIPYV 116 (375)
T ss_pred ceeeecccchhhhhh-----------hhhhccChhHHHHHHHhCCCCCEEEEecccchHHHHHHHHH-----HHhCCCEE
Confidence 000000000000000 0000111122222233347899999997332 222222111 13588999
Q ss_pred EEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhh
Q 043397 269 LTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVL 348 (596)
Q Consensus 269 ~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~ 348 (596)
++.|+......... ..+.... ......+..+..++.+++.|..........
T Consensus 117 ~~~~~~~~~~~~~~-----~~~~~~~-----------------~~~~~~~~~~~~~~~i~~~s~~~~~~~~~~------- 167 (375)
T cd03821 117 VSPHGMLDPWALPH-----KALKKRL-----------------AWFLFERRLLQAAAAVHATSEQEAAEIRRL------- 167 (375)
T ss_pred EEcccccccccccc-----chhhhHH-----------------HHHHHHHHHHhcCCEEEECCHHHHHHHHhh-------
Confidence 99997754221100 0000000 011123344566889999987666554322
Q ss_pred hccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHH
Q 043397 349 ITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAI 428 (596)
Q Consensus 349 ~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~ 428 (596)
....++.+||||+|.+.+.+.... ..++.++.+ .+.++++|+||+.+.||++.+++|+
T Consensus 168 -~~~~~~~vi~~~~~~~~~~~~~~~-------------------~~~~~~~~~--~~~~~i~~~G~~~~~K~~~~li~a~ 225 (375)
T cd03821 168 -GLKAPIAVIPNGVDIPPFAALPSR-------------------GRRRKFPIL--PDKRIILFLGRLHPKKGLDLLIEAF 225 (375)
T ss_pred -CCcccEEEcCCCcChhccCcchhh-------------------hhhhhccCC--CCCcEEEEEeCcchhcCHHHHHHHH
Confidence 236789999999998877654211 114445544 6788999999999999999999999
Q ss_pred HHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhc
Q 043397 429 KRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRY 506 (596)
Q Consensus 429 ~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~ 506 (596)
.++.+ ++++|+|+|. .++.+...++.+++++++.++|.|+|+++++++..+|+.||++++||..|++|++++|||++
T Consensus 226 ~~l~~~~~~~~l~i~G~-~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~ 304 (375)
T cd03821 226 AKLAERFPDWHLVIAGP-DEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALAC 304 (375)
T ss_pred HHhhhhcCCeEEEEECC-CCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhc
Confidence 99977 6899999998 34455666777778888889999999999999999999999999999999999999999999
Q ss_pred CCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH---HhcCCHHHHH
Q 043397 507 GAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIM---ENDNSWNNAA 583 (596)
Q Consensus 507 G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~---~~~fs~~~~~ 583 (596)
|+|+|+++.||..+++.+ .+|++++. |.++++++|.++++ +++.++++++++. +++|||+.++
T Consensus 305 G~PvI~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~i~~l~~----~~~~~~~~~~~~~~~~~~~~s~~~~~ 370 (375)
T cd03821 305 GTPVVTTDKVPWQELIEY---------GCGWVVDD-DVDALAAALRRALE----LPQRLKAMGENGRALVEERFSWTAIA 370 (375)
T ss_pred CCCEEEcCCCCHHHHhhc---------CceEEeCC-ChHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999999999976 58888876 66999999999998 8888888876554 4899999999
Q ss_pred HHHHH
Q 043397 584 GKYME 588 (596)
Q Consensus 584 ~~~~~ 588 (596)
+++++
T Consensus 371 ~~~~~ 375 (375)
T cd03821 371 QQLLE 375 (375)
T ss_pred HHhhC
Confidence 99863
No 39
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=2e-35 Score=310.98 Aligned_cols=383 Identities=14% Similarity=0.116 Sum_probs=241.1
Q ss_pred CCceeEEEEeecccccccccCHHHHHhHHHHHHHhcC-CeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEe
Q 043397 106 SNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRG-HTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYH 184 (596)
Q Consensus 106 ~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~G-h~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (596)
+++|||+++|..|.| ..+|+......++..|+++| |+|+|+.|.+....... .....-.|..+.... .+.
T Consensus 2 ~~~mrIaivTdt~lP--~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~--~~~~~~~f~~~~~~e-----~~~ 72 (462)
T PLN02846 2 QKKQHIAIFTTASLP--WMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKL--VYPNKITFSSPSEQE-----AYV 72 (462)
T ss_pred CCCCEEEEEEcCCCC--CCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccc--cccccccccCchhhh-----hhh
Confidence 356999999999999 46999999999999999999 79999999875321100 000000111110000 000
Q ss_pred eeeCCeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCcc-chH--HHHHHHHhhhcc
Q 043397 185 GVVSSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQI-GAL--PLLYWDMYQSLS 261 (596)
Q Consensus 185 ~~~~gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~-~~~--~~~~~~~~~~~~ 261 (596)
....+-.+++++.....+.+. .|+.. .+.......+.+.++. .+|||||+|+... +.. +..+. +
T Consensus 73 ~~~~~~~v~r~~s~~~p~yp~-r~~~~----~r~~~~~~~i~~~l~~--~~pDVIHv~tP~~LG~~~~g~~~~------~ 139 (462)
T PLN02846 73 RQWLEERISFLPKFSIKFYPG-KFSTD----KRSILPVGDISETIPD--EEADIAVLEEPEHLTWYHHGKRWK------T 139 (462)
T ss_pred hhhccCeEEEecccccccCcc-ccccc----ccccCChHHHHHHHHh--cCCCEEEEcCchhhhhHHHHHHHH------h
Confidence 000112222333111111111 01000 0011122344445443 7999999998553 332 11111 1
Q ss_pred CCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhc
Q 043397 262 LKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCS 341 (596)
Q Consensus 262 ~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~ 341 (596)
..+ ++|.+.|+..... .+.. ..+.... .+.+.+ ..+++. .++|.++++|....+ +.
T Consensus 140 k~~-~vV~tyHT~y~~Y-~~~~---~~g~~~~---~l~~~~-----------~~~~~r--~~~d~vi~pS~~~~~-l~-- 195 (462)
T PLN02846 140 KFR-LVIGIVHTNYLEY-VKRE---KNGRVKA---FLLKYI-----------NSWVVD--IYCHKVIRLSAATQD-YP-- 195 (462)
T ss_pred cCC-cEEEEECCChHHH-HHHh---ccchHHH---HHHHHH-----------HHHHHH--HhcCEEEccCHHHHH-Hh--
Confidence 223 4888999854211 0000 0000000 000000 011111 238999999975544 32
Q ss_pred chhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCH
Q 043397 342 GWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGL 421 (596)
Q Consensus 342 g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi 421 (596)
..+...++|||.+.|.+... ..++..+ ..+.-.+.++|+||+.++||+
T Consensus 196 -----------~~~i~~v~GVd~~~f~~~~~--------------------~~~~~~~-~~~~~~~~~l~vGRL~~eK~~ 243 (462)
T PLN02846 196 -----------RSIICNVHGVNPKFLEIGKL--------------------KLEQQKN-GEQAFTKGAYYIGKMVWSKGY 243 (462)
T ss_pred -----------hCEEecCceechhhcCCCcc--------------------cHhhhcC-CCCCcceEEEEEecCcccCCH
Confidence 23444568999988876521 0111121 101113578999999999999
Q ss_pred HHHHHHHHHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchH
Q 043397 422 HLITHAIKRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLA 499 (596)
Q Consensus 422 ~~ll~A~~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~ 499 (596)
+.+|+|++++.+ ++++|+|+|+ |+..+.++++++++++..++ |.|..+.+ .+|+.+|+||+||..|++|++
T Consensus 244 ~~Li~a~~~l~~~~~~~~l~ivGd---Gp~~~~L~~~a~~l~l~~~v-f~G~~~~~---~~~~~~DvFv~pS~~Et~g~v 316 (462)
T PLN02846 244 KELLKLLHKHQKELSGLEVDLYGS---GEDSDEVKAAAEKLELDVRV-YPGRDHAD---PLFHDYKVFLNPSTTDVVCTT 316 (462)
T ss_pred HHHHHHHHHHHhhCCCeEEEEECC---CccHHHHHHHHHhcCCcEEE-ECCCCCHH---HHHHhCCEEEECCCcccchHH
Confidence 999999998865 5789999999 99999999999998875333 66765543 699999999999999999999
Q ss_pred HHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCH
Q 043397 500 QMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIMENDNSW 579 (596)
Q Consensus 500 ~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~ 579 (596)
++||||||+|||+++.++ .+++.+ +.+|++++ |.++++++|.++++. ++ .+++.++. ++|||
T Consensus 317 ~lEAmA~G~PVVa~~~~~-~~~v~~--------~~ng~~~~--~~~~~a~ai~~~l~~---~~---~~~~~~a~-~~~SW 378 (462)
T PLN02846 317 TAEALAMGKIVVCANHPS-NEFFKQ--------FPNCRTYD--DGKGFVRATLKALAE---EP---APLTDAQR-HELSW 378 (462)
T ss_pred HHHHHHcCCcEEEecCCC-cceeec--------CCceEecC--CHHHHHHHHHHHHcc---Cc---hhHHHHHH-HhCCH
Confidence 999999999999999998 599988 78999884 899999999999972 22 23333333 48999
Q ss_pred HHHHHHHHHHHH
Q 043397 580 NNAAGKYMEIYN 591 (596)
Q Consensus 580 ~~~~~~~~~iy~ 591 (596)
+.++++++++|+
T Consensus 379 e~~~~~l~~~~~ 390 (462)
T PLN02846 379 EAATERFLRVAD 390 (462)
T ss_pred HHHHHHHHHHhc
Confidence 999999999997
No 40
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=100.00 E-value=1.5e-34 Score=300.75 Aligned_cols=356 Identities=23% Similarity=0.249 Sum_probs=253.6
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCC
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSS 189 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (596)
||++++..++|. ..||.+.++..|+++|.++||+|+++++........... .+
T Consensus 1 kIl~i~~~~~~~-~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~--------------------------~~ 53 (359)
T cd03823 1 RILVVNHLYPPR-SVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEV--------------------------IG 53 (359)
T ss_pred CeeEEcccCCcc-cccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCccccc--------------------------cc
Confidence 799999998875 579999999999999999999999999654332111000 00
Q ss_pred eEEEEEcCCccccCCCcccCCChhhHHH--HHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcE
Q 043397 190 IPVIFIEPSNQFFKGKNVYGGSYNELEA--YLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRI 267 (596)
Q Consensus 190 v~v~~~~~~~~~~~~~~~y~~~~~~~~~--~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pv 267 (596)
........ .......... ....... ...+...+.+.++. .+||+||+|.+.......+... +..++|+
T Consensus 54 ~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~dii~~~~~~~~~~~~~~~~-----~~~~~~~ 123 (359)
T cd03823 54 VVVYGRPI--DEVLRSALPR-DLFHLSDYDNPAVVAEFARLLED--FRPDVVHFHHLQGLGVSILRAA-----RDRGIPI 123 (359)
T ss_pred ceeecccc--ccccCCCchh-hhhHHHhccCHHHHHHHHHHHHH--cCCCEEEECCccchHHHHHHHH-----HhcCCCE
Confidence 11111000 0000000000 0000000 01122333344433 6899999997633222222111 1347999
Q ss_pred EEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhh
Q 043397 268 VLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASV 347 (596)
Q Consensus 268 v~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~ 347 (596)
++++|+.+...... ... ....|.++++|+...+.+...+
T Consensus 124 i~~~hd~~~~~~~~------------------~~~------------------~~~~d~ii~~s~~~~~~~~~~~----- 162 (359)
T cd03823 124 VLTLHDYWLICPRQ------------------GLF------------------KKGGDAVIAPSRFLLDRYVANG----- 162 (359)
T ss_pred EEEEeeeeeecchh------------------hhh------------------ccCCCEEEEeCHHHHHHHHHcC-----
Confidence 99999765311100 000 0113899999999988876543
Q ss_pred hhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHH
Q 043397 348 LITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHA 427 (596)
Q Consensus 348 ~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A 427 (596)
....++.+|+||+|...+.+... ..+ .++++|+|+|++.+.||++.++++
T Consensus 163 --~~~~~~~vi~n~~~~~~~~~~~~--------------------------~~~--~~~~~i~~~G~~~~~k~~~~li~~ 212 (359)
T cd03823 163 --LFAEKISVIRNGIDLDRAKRPRR--------------------------APP--GGRLRFGFIGQLTPHKGVDLLLEA 212 (359)
T ss_pred --CCccceEEecCCcChhhcccccc--------------------------CCC--CCceEEEEEecCccccCHHHHHHH
Confidence 12468999999999877654310 111 567889999999999999999999
Q ss_pred HHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCC-CCCCchHHHHHHhc
Q 043397 428 IKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSI-YEPCGLAQMIGMRY 506 (596)
Q Consensus 428 ~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~-~E~~gl~~lEAma~ 506 (596)
+..+.+++++|+++|. +.......... +..++|.++|+++.+++..+|++||++++||. .|++|++++|||++
T Consensus 213 ~~~l~~~~~~l~i~G~---~~~~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~ 286 (359)
T cd03823 213 FKRLPRGDIELVIVGN---GLELEEESYEL---EGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAA 286 (359)
T ss_pred HHHHHhcCcEEEEEcC---chhhhHHHHhh---cCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHC
Confidence 9998767899999998 65544443333 45678999999999999999999999999998 69999999999999
Q ss_pred CCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 043397 507 GAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIMENDNSWNNAAGKY 586 (596)
Q Consensus 507 G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~ 586 (596)
|+|+|+++.++..+.+.+ +.+|+++++.|.++++++|.++++ +++.++.+++++.+ .++.+.++++|
T Consensus 287 G~Pvi~~~~~~~~e~i~~--------~~~g~~~~~~d~~~l~~~i~~l~~----~~~~~~~~~~~~~~-~~~~~~~~~~~ 353 (359)
T cd03823 287 GVPVIASDIGGMAELVRD--------GVNGLLFPPGDAEDLAAALERLID----DPDLLERLRAGIEP-PRSIEDQAEEY 353 (359)
T ss_pred CCCEEECCCCCHHHHhcC--------CCcEEEECCCCHHHHHHHHHHHHh----ChHHHHHHHHhHHH-hhhHHHHHHHH
Confidence 999999999999999988 679999999999999999999998 99999999988765 44559999999
Q ss_pred HHHHHH
Q 043397 587 MEIYNS 592 (596)
Q Consensus 587 ~~iy~~ 592 (596)
+++|++
T Consensus 354 ~~~~~~ 359 (359)
T cd03823 354 LKLYRS 359 (359)
T ss_pred HHHhhC
Confidence 999973
No 41
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=100.00 E-value=1.6e-34 Score=301.79 Aligned_cols=354 Identities=19% Similarity=0.191 Sum_probs=249.3
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCC
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSS 189 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (596)
||+|+++. +| ..||.++++.+|+++|.+.||+|.+++............. ..+
T Consensus 1 kI~~v~~~-~~--~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~------------------------~~~ 53 (366)
T cd03822 1 RIALVSPY-PP--RKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGE------------------------QEV 53 (366)
T ss_pred CeEEecCC-CC--CCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCc------------------------ccc
Confidence 79999764 45 4699999999999999999999999984422110000000 000
Q ss_pred eEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEE
Q 043397 190 IPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVL 269 (596)
Q Consensus 190 v~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~ 269 (596)
....... . ......+.+.++ ..+||+||++.|.....+.............++|+|+
T Consensus 54 ~~~~~~~---~------------------~~~~~~~~~~~~--~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 110 (366)
T cd03822 54 VRVIVLD---N------------------PLDYRRAARAIR--LSGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVV 110 (366)
T ss_pred eeeeecC---C------------------chhHHHHHHHHh--hcCCCEEEEeeccccccchhhHHHHHHHhhcCCCEEE
Confidence 1110000 0 001122233333 2689999998765433332221111111236899999
Q ss_pred EEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhh
Q 043397 270 TIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLI 349 (596)
Q Consensus 270 tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~ 349 (596)
++|+..+.. ... ....+.+..++.+|.++++|....+++...
T Consensus 111 ~~h~~~~~~------------~~~------------------~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-------- 152 (366)
T cd03822 111 TLHTVLLHE------------PRP------------------GDRALLRLLLRRADAVIVMSSELLRALLLR-------- 152 (366)
T ss_pred EEecCCccc------------cch------------------hhhHHHHHHHhcCCEEEEeeHHHHHHHHhh--------
Confidence 999862110 000 011223445677999999974444443211
Q ss_pred ccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHH
Q 043397 350 THRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIK 429 (596)
Q Consensus 350 ~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~ 429 (596)
....++.+||||+|...+.+.. . . +..... .+.++++|+|++.+.||++.+++|+.
T Consensus 153 ~~~~~~~~i~~~~~~~~~~~~~-------------------~--~-~~~~~~--~~~~~i~~~G~~~~~K~~~~ll~a~~ 208 (366)
T cd03822 153 AYPEKIAVIPHGVPDPPAEPPE-------------------S--L-KALGGL--DGRPVLLTFGLLRPYKGLELLLEALP 208 (366)
T ss_pred cCCCcEEEeCCCCcCcccCCch-------------------h--h-HhhcCC--CCCeEEEEEeeccCCCCHHHHHHHHH
Confidence 1147999999999976554321 0 0 122222 56789999999999999999999999
Q ss_pred HHHH--cCCEEEEEecCCCCcchHHHH-----HHHHHcCCCCcEEEEec-cCHHHHHHHHHhCCEEEEcCCCC--CCchH
Q 043397 430 RAEE--LGGQMILLGNSPVHWVQKDFE-----DLANLHNKGTSTRILLM-YSEELSHMLYAAADIVLVPSIYE--PCGLA 499 (596)
Q Consensus 430 ~l~~--~~~~lvIvG~~~~g~~~~~l~-----~~~~~~~~~~~V~~~g~-~~~~~l~~~~a~aDi~l~PS~~E--~~gl~ 499 (596)
++.+ ++++|+|+|+ +....... ++++++++.++|.|+|. ++.+++..+|+.||++++||.+| ++|++
T Consensus 209 ~~~~~~~~~~l~i~G~---~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~ 285 (366)
T cd03822 209 LLVAKHPDVRLLVAGE---THPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGV 285 (366)
T ss_pred HHHhhCCCeEEEEecc---CccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchH
Confidence 9876 5899999998 44332222 23778888899999987 99999999999999999999999 99999
Q ss_pred HHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--hcC
Q 043397 500 QMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME--NDN 577 (596)
Q Consensus 500 ~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~--~~f 577 (596)
++|||++|+|+|+++.|+ .+.+.+ +.+|+++++.|+++++++|.++++ +++.+.+|++++.+ ++|
T Consensus 286 ~~Ea~a~G~PvI~~~~~~-~~~i~~--------~~~g~~~~~~d~~~~~~~l~~l~~----~~~~~~~~~~~~~~~~~~~ 352 (366)
T cd03822 286 LAYAIGFGKPVISTPVGH-AEEVLD--------GGTGLLVPPGDPAALAEAIRRLLA----DPELAQALRARAREYARAM 352 (366)
T ss_pred HHHHHHcCCCEEecCCCC-hheeee--------CCCcEEEcCCCHHHHHHHHHHHHc----ChHHHHHHHHHHHHHHhhC
Confidence 999999999999999999 666666 579999999999999999999998 88889999877654 569
Q ss_pred CHHHHHHHHHHHHH
Q 043397 578 SWNNAAGKYMEIYN 591 (596)
Q Consensus 578 s~~~~~~~~~~iy~ 591 (596)
||+.++++|.++|+
T Consensus 353 s~~~~~~~~~~~~~ 366 (366)
T cd03822 353 SWERVAERYLRLLA 366 (366)
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999999884
No 42
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=2.8e-35 Score=319.08 Aligned_cols=297 Identities=19% Similarity=0.154 Sum_probs=223.6
Q ss_pred CCCCcEEEEcCCc-cchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhh-hhhccccccCCC
Q 043397 233 GVQPDIIHVHEWQ-IGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASV-EKAIDDRTIGHN 310 (596)
Q Consensus 233 ~~~pDVIh~~~~~-~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 310 (596)
..++||||+|+.. .++++.++.. ..++|+|+|.|+..+..... ... ...+....++.. .+
T Consensus 171 ~~~~dviH~~s~~~~g~~~~~~~~------~~~~p~I~t~Hg~~~~e~~~-~~~-~~~~~~~~~~~~~~~---------- 232 (475)
T cd03813 171 LPKADVYHAVSTGYAGLLGALAKA------RRGTPFLLTEHGIYTRERKI-ELL-QADWEMSYFRRLWIR---------- 232 (475)
T ss_pred CCCCCEEeccCcchHHHHHHHHHH------HhCCCEEEecCCccHHHHHH-HHH-hcccchHHHHHHHHH----------
Confidence 3589999999743 2333333332 35899999999876421100 000 000000000000 00
Q ss_pred cccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhh
Q 043397 311 PERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKIC 390 (596)
Q Consensus 311 ~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~ 390 (596)
-...+.+.+++.||.|+++|+..++.+...| .+.+|+.+||||+|.+.|.+....
T Consensus 233 -~~~~l~~~~~~~ad~Ii~~s~~~~~~~~~~g-------~~~~ki~vIpNgid~~~f~~~~~~----------------- 287 (475)
T cd03813 233 -FFESLGRLAYQAADRITTLYEGNRERQIEDG-------ADPEKIRVIPNGIDPERFAPARRA----------------- 287 (475)
T ss_pred -HHHHHHHHHHHhCCEEEecCHHHHHHHHHcC-------CCHHHeEEeCCCcCHHHcCCcccc-----------------
Confidence 0112345677889999999998877654433 456799999999999877654210
Q ss_pred HHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHH--cCCEEEEEecC-CCCcchHHHHHHHHHcCCCCcEE
Q 043397 391 KYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--LGGQMILLGNS-PVHWVQKDFEDLANLHNKGTSTR 467 (596)
Q Consensus 391 k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~~~~lvIvG~~-~~g~~~~~l~~~~~~~~~~~~V~ 467 (596)
.. ..+.++|+|+||+.+.||++.+++|++.+.+ ++++|+|+|+. .+..+.++++++++++++.++|+
T Consensus 288 --------~~--~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~ 357 (475)
T cd03813 288 --------RP--EKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVK 357 (475)
T ss_pred --------cc--CCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEE
Confidence 01 1567899999999999999999999999876 68999999982 12245677889999999999999
Q ss_pred EEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHH
Q 043397 468 ILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSL 547 (596)
Q Consensus 468 ~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~l 547 (596)
|+| .+++..+|+++|++++||..|++|++++|||+||+|||+|+.||++|++.+.+.+ ..|.+|+++++.|++++
T Consensus 358 f~G---~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g~~~elv~~~~~~--~~g~~G~lv~~~d~~~l 432 (475)
T cd03813 358 FTG---FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVATDVGSCRELIEGADDE--ALGPAGEVVPPADPEAL 432 (475)
T ss_pred EcC---CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEECCCCChHHHhcCCccc--ccCCceEEECCCCHHHH
Confidence 999 4558999999999999999999999999999999999999999999999873211 12358999999999999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHH
Q 043397 548 NWALDRAFRHFIDKPEEWNRIVQKIME---NDNSWNNAAGKYMEIYN 591 (596)
Q Consensus 548 a~~i~~ll~~~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~iy~ 591 (596)
+++|.++++ |++.+++|++++.+ +.|+|+.++++|.++|+
T Consensus 433 a~ai~~ll~----~~~~~~~~~~~a~~~v~~~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 433 ARAILRLLK----DPELRRAMGEAGRKRVERYYTLERMIDSYRRLYL 475 (475)
T ss_pred HHHHHHHhc----CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 999999998 99999999876654 78999999999999995
No 43
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=100.00 E-value=1.3e-34 Score=302.44 Aligned_cols=368 Identities=23% Similarity=0.251 Sum_probs=264.3
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCC
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSS 189 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (596)
|||+++..++| ..||.+..+..++++|.++||+|+++++........... .+
T Consensus 1 kil~~~~~~~p--~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~--------------------------~~ 52 (374)
T cd03817 1 KIGIFTDTYLP--QVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEV--------------------------VV 52 (374)
T ss_pred CeeEeehhccC--CCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCccccc--------------------------cc
Confidence 79999999988 579999999999999999999999999765433211000 00
Q ss_pred eEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccc-hHHHHHHHHhhhccCCCCcEE
Q 043397 190 IPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIG-ALPLLYWDMYQSLSLKKPRIV 268 (596)
Q Consensus 190 v~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~-~~~~~~~~~~~~~~~~~~pvv 268 (596)
+...... . ....+ ......+...+...++ ..+||+||+|+.... .....+.+ ..++|++
T Consensus 53 ~~~~~~~-~-~~~~~----------~~~~~~~~~~~~~~~~--~~~~Div~~~~~~~~~~~~~~~~~------~~~~~~i 112 (374)
T cd03817 53 VRPFRVP-T-FKYPD----------FRLPLPIPRALIIILK--ELGPDIVHTHTPFSLGLLGLRVAR------KLGIPVV 112 (374)
T ss_pred ccccccc-c-chhhh----------hhccccHHHHHHHHHh--hcCCCEEEECCchhhhhHHHHHHH------HcCCCEE
Confidence 1110000 0 00000 0000012222222233 368999999975332 22222221 3589999
Q ss_pred EEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccc-hhhchhccccCeEEEeChhhHHHHhhcchhhhh
Q 043397 269 LTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERL-SLLKGGIVYSNAVVTVSPTYLKETLCSGWLASV 347 (596)
Q Consensus 269 ~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~ 347 (596)
+++|+.... +.. ........... ... .+.+..+..+|.++++|+..++.+...+
T Consensus 113 ~~~~~~~~~--~~~----~~~~~~~~~~~--------------~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~~~----- 167 (374)
T cd03817 113 ATYHTMYED--YTH----YVPLGRLLARA--------------VVRRKLSRRFYNRCDAVIAPSEKIADLLREYG----- 167 (374)
T ss_pred EEecCCHHH--HHH----HHhcccchhHH--------------HHHHHHHHHHhhhCCEEEeccHHHHHHHHhcC-----
Confidence 999976531 000 00000000000 001 3445567789999999998888765443
Q ss_pred hhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHH
Q 043397 348 LITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHA 427 (596)
Q Consensus 348 ~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A 427 (596)
...++.++|||+|...+.+... ...++.++.. .+.+.|+++|++.+.||++.++++
T Consensus 168 ---~~~~~~vi~~~~~~~~~~~~~~-------------------~~~~~~~~~~--~~~~~i~~~G~~~~~k~~~~l~~~ 223 (374)
T cd03817 168 ---VKRPIEVIPTGIDLDRFEPVDG-------------------DDERRKLGIP--EDEPVLLYVGRLAKEKNIDFLIRA 223 (374)
T ss_pred ---CCCceEEcCCccchhccCccch-------------------hHHHHhcCCC--CCCeEEEEEeeeecccCHHHHHHH
Confidence 1456999999999887765421 1123445543 567889999999999999999999
Q ss_pred HHHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHh
Q 043397 428 IKRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMR 505 (596)
Q Consensus 428 ~~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma 505 (596)
++++.+ ++++|+++|+ |+..+.+++++++++..++|.|+|.++.+++..+|+.||++++||..|++|++++|||+
T Consensus 224 ~~~~~~~~~~~~l~i~G~---~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~ 300 (374)
T cd03817 224 FARLLKEEPDVKLVIVGD---GPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMA 300 (374)
T ss_pred HHHHHHhCCCeEEEEEeC---CchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHHH
Confidence 999876 6799999999 88889999999999988999999999999999999999999999999999999999999
Q ss_pred cCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--hcCCHHHHH
Q 043397 506 YGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME--NDNSWNNAA 583 (596)
Q Consensus 506 ~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~--~~fs~~~~~ 583 (596)
+|+|+|+++.|+..+++.+ +.+|+++++.|. +++++|.++++ +++.+++|++++.+ .+++ .+
T Consensus 301 ~g~PvI~~~~~~~~~~i~~--------~~~g~~~~~~~~-~~~~~i~~l~~----~~~~~~~~~~~~~~~~~~~~---~~ 364 (374)
T cd03817 301 AGLPVVAVDAPGLPDLVAD--------GENGFLFPPGDE-ALAEALLRLLQ----DPELRRRLSKNAEESAEKFS---FA 364 (374)
T ss_pred cCCcEEEeCCCChhhheec--------CceeEEeCCCCH-HHHHHHHHHHh----ChHHHHHHHHHHHHHHHHHH---HH
Confidence 9999999999999999988 789999998777 99999999998 88888888877665 3444 67
Q ss_pred HHHHHHHHHH
Q 043397 584 GKYMEIYNSI 593 (596)
Q Consensus 584 ~~~~~iy~~l 593 (596)
+++.++|+++
T Consensus 365 ~~~~~~~~~~ 374 (374)
T cd03817 365 KKVEKLYEEV 374 (374)
T ss_pred HHHHHHHhcC
Confidence 7788887753
No 44
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=5.7e-35 Score=305.42 Aligned_cols=341 Identities=16% Similarity=0.114 Sum_probs=246.8
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchh-hhhhcccceeeeEEeecCCceEEEEEEeeeeC
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQ-KQEISDLALITTYNSYHDGNWVATNAYHGVVS 188 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (596)
||++++..+ ..||.+.++.+++++|.+.||+|+++++...... .... ...
T Consensus 1 kIl~~~~~~----~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~~~-------------------------~~~ 51 (358)
T cd03812 1 KILHIVGTM----NRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEI-------------------------EKL 51 (358)
T ss_pred CEEEEeCCC----CCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHHHH-------------------------HHc
Confidence 789998776 4699999999999999999999999996533210 0000 013
Q ss_pred CeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEE
Q 043397 189 SIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIV 268 (596)
Q Consensus 189 gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv 268 (596)
|+.++.++.... ....+.+.+.+.++ ..+|||||+|......++.++... .....++
T Consensus 52 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~~--~~~~Dvv~~~~~~~~~~~~~~~~~-----~~~~~~v 108 (358)
T cd03812 52 GGKIYYIPARKK----------------NPLKYFKKLYKLIK--KNKYDIVHVHGSSASGFILLAAKK-----AGVKVRI 108 (358)
T ss_pred CCeEEEecCCCc----------------cHHHHHHHHHHHHh--cCCCCEEEEeCcchhHHHHHHHhh-----CCCCeEE
Confidence 455554431100 01122333333333 379999999986644333333221 2233457
Q ss_pred EEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhh
Q 043397 269 LTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVL 348 (596)
Q Consensus 269 ~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~ 348 (596)
++.|+.......... ... ...+.+..++.+|.++++|+..++.+...
T Consensus 109 ~~~~~~~~~~~~~~~---------~~~-----------------~~~~~~~~~~~~~~~i~~s~~~~~~~~~~------- 155 (358)
T cd03812 109 AHSHNTSDSHDKKKK---------ILK-----------------YKVLRKLINRLATDYLACSEEAGKWLFGK------- 155 (358)
T ss_pred EEeccccccccccch---------hhH-----------------HHHHHHHHHhcCCEEEEcCHHHHHHHHhC-------
Confidence 788876542211100 000 00122344666899999999888875432
Q ss_pred hccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHH
Q 043397 349 ITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAI 428 (596)
Q Consensus 349 ~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~ 428 (596)
....++.+||||+|...+.+.... +.. ++..+.. +++++|+|+||+.++||++.+++|+
T Consensus 156 -~~~~~~~vi~ngvd~~~~~~~~~~-----------------~~~-~~~~~~~--~~~~~i~~vGr~~~~Kg~~~li~a~ 214 (358)
T cd03812 156 -VKNKKFKVIPNGIDLEKFIFNEEI-----------------RKK-RRELGIL--EDKFVIGHVGRFSEQKNHEFLIEIF 214 (358)
T ss_pred -CCcccEEEEeccCcHHHcCCCchh-----------------hhH-HHHcCCC--CCCEEEEEEeccccccChHHHHHHH
Confidence 236789999999998877544210 111 3344443 6788999999999999999999999
Q ss_pred HHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhc
Q 043397 429 KRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRY 506 (596)
Q Consensus 429 ~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~ 506 (596)
..+.+ ++++|+|+|+ |+..+.+++.++++++.++|.|+|. .+++..+|+.||++++||..|++|++++|||++
T Consensus 215 ~~l~~~~~~~~l~ivG~---g~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~ 289 (358)
T cd03812 215 AELLKKNPNAKLLLVGD---GELEEEIKKKVKELGLEDKVIFLGV--RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQAS 289 (358)
T ss_pred HHHHHhCCCeEEEEEeC---CchHHHHHHHHHhcCCCCcEEEecc--cCCHHHHHHhcCEEEecccccCCCHHHHHHHHh
Confidence 99976 5899999999 8888999999999999999999999 445899999999999999999999999999999
Q ss_pred CCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043397 507 GAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME 574 (596)
Q Consensus 507 G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~ 574 (596)
|+|||+++.||..+++.+ ..|++..+.++++++++|.++++ +++..+.+..++..
T Consensus 290 G~PvI~s~~~~~~~~i~~---------~~~~~~~~~~~~~~a~~i~~l~~----~~~~~~~~~~~~~~ 344 (358)
T cd03812 290 GLPCILSDTITKEVDLTD---------LVKFLSLDESPEIWAEEILKLKS----EDRRERSSESIKKK 344 (358)
T ss_pred CCCEEEEcCCchhhhhcc---------CccEEeCCCCHHHHHHHHHHHHh----Ccchhhhhhhhhhc
Confidence 999999999999999987 45677776688999999999999 88888888766655
No 45
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=100.00 E-value=7.8e-35 Score=304.90 Aligned_cols=349 Identities=21% Similarity=0.259 Sum_probs=249.2
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeC
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVS 188 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (596)
|||++++... ..||.++++..++++|.++||+|++++.....
T Consensus 1 MkIl~~~~~~----~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~---------------------------------- 42 (365)
T cd03825 1 MKVLHLNTSD----ISGGAARAAYRLHRALQAAGVDSTMLVQEKKA---------------------------------- 42 (365)
T ss_pred CeEEEEecCC----CCCcHHHHHHHHHHHHHhcCCceeEEEeecch----------------------------------
Confidence 8999997542 45999999999999999999999999832110
Q ss_pred CeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEE
Q 043397 189 SIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIV 268 (596)
Q Consensus 189 gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv 268 (596)
+. +.+. ..+|||||+|.+....+........ ..++|+|
T Consensus 43 --------------------------------~~----~~~~--~~~~diih~~~~~~~~~~~~~~~~~----~~~~~~v 80 (365)
T cd03825 43 --------------------------------LI----SKIE--IINADIVHLHWIHGGFLSIEDLSKL----LDRKPVV 80 (365)
T ss_pred --------------------------------hh----hChh--cccCCEEEEEccccCccCHHHHHHH----HcCCCEE
Confidence 00 0001 2689999999766554443322221 1489999
Q ss_pred EEEcCCCCCCc-ch--hhhh---hhcCCCchhhhhhhhhccccccCCCcccchhhchhc-cccCeEEEeChhhHHHHhhc
Q 043397 269 LTIHNMEHYGE-CR--QEQL---SKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGI-VYSNAVVTVSPTYLKETLCS 341 (596)
Q Consensus 269 ~tiH~~~~~~~-~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ad~vi~vS~~~~~~~~~~ 341 (596)
+++|+.++... +. .... ..++.+..........+ ....+...+..+ ..++.++++|+...+.+...
T Consensus 81 ~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~ 153 (365)
T cd03825 81 WTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDL-------SRWIWRRKRKAWADLNLTIVAPSRWLADCARSS 153 (365)
T ss_pred EEcccCcccccccCCccccccccccCCCCCCCCCCCcccH-------HHHHHHHHHHHhccCCcEEEehhHHHHHHHHhc
Confidence 99998764211 00 0000 00000000000000000 000011111111 34678899998777775432
Q ss_pred chhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccc--cC
Q 043397 342 GWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVA--QK 419 (596)
Q Consensus 342 g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~--~K 419 (596)
+..+..++.++|||+|.+.+.+. .+...++.++++ ++..++++.|+... .|
T Consensus 154 ------~~~~~~~~~vi~ngi~~~~~~~~-------------------~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~K 206 (365)
T cd03825 154 ------SLFKGIPIEVIPNGIDTTIFRPR-------------------DKREARKRLGLP--ADKKIILFGAVGGTDPRK 206 (365)
T ss_pred ------cccCCCceEEeCCCCcccccCCC-------------------cHHHHHHHhCCC--CCCeEEEEEecCCCcccc
Confidence 22446799999999998877654 123456667775 56677777777655 89
Q ss_pred CHHHHHHHHHHHHH---cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccC-HHHHHHHHHhCCEEEEcCCCCC
Q 043397 420 GLHLITHAIKRAEE---LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYS-EELSHMLYAAADIVLVPSIYEP 495 (596)
Q Consensus 420 Gi~~ll~A~~~l~~---~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~-~~~l~~~~a~aDi~l~PS~~E~ 495 (596)
|++.+++|++.+.+ ++++++++|+ +...... +...+|.++|+++ ++++..+|+.||++++||..|+
T Consensus 207 ~~~~ll~a~~~l~~~~~~~~~~~i~G~---~~~~~~~-------~~~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~ 276 (365)
T cd03825 207 GFDELIEALKRLAERWKDDIELVVFGA---SDPEIPP-------DLPFPVHYLGSLNDDESLALIYSAADVFVVPSLQEN 276 (365)
T ss_pred CHHHHHHHHHHhhhccCCCeEEEEeCC---Cchhhhc-------cCCCceEecCCcCCHHHHHHHHHhCCEEEecccccc
Confidence 99999999999876 6789999998 5433221 3456799999999 8889999999999999999999
Q ss_pred CchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-
Q 043397 496 CGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME- 574 (596)
Q Consensus 496 ~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~- 574 (596)
+|++++|||++|+|||+++.||..|++.+ +.+|+++++.|+++++++|.++++ +++.+.++++++.+
T Consensus 277 ~g~~~~Eam~~g~PvI~~~~~~~~e~~~~--------~~~g~~~~~~~~~~~~~~l~~l~~----~~~~~~~~~~~~~~~ 344 (365)
T cd03825 277 FPNTAIEALACGTPVVAFDVGGIPDIVDH--------GVTGYLAKPGDPEDLAEGIEWLLA----DPDEREELGEAAREL 344 (365)
T ss_pred ccHHHHHHHhcCCCEEEecCCCChhheeC--------CCceEEeCCCCHHHHHHHHHHHHh----CHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988 679999999999999999999998 88888888866543
Q ss_pred --hcCCHHHHHHHHHHHHHHH
Q 043397 575 --NDNSWNNAAGKYMEIYNSI 593 (596)
Q Consensus 575 --~~fs~~~~~~~~~~iy~~l 593 (596)
++|||+.++++|+++|+++
T Consensus 345 ~~~~~s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 345 AENEFDSRVQAKRYLSLYEEL 365 (365)
T ss_pred HHHhcCHHHHHHHHHHHHhhC
Confidence 6899999999999999874
No 46
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=100.00 E-value=2e-34 Score=300.72 Aligned_cols=343 Identities=18% Similarity=0.158 Sum_probs=256.3
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCC
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSS 189 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (596)
|||+++..++| |.+.++.+++++|.++||+|+|++.............. ..+
T Consensus 1 ki~~~~~~~~~-----~~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~-----------------------~~~ 52 (355)
T cd03799 1 KIAYLVKEFPR-----LSETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDR-----------------------AEL 52 (355)
T ss_pred CEEEECCCCCC-----cchHHHHHHHHHHHhCCCeEEEEEecCccccccccccc-----------------------ccc
Confidence 79999988854 25899999999999999999999965432211000000 000
Q ss_pred eEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEE
Q 043397 190 IPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVL 269 (596)
Q Consensus 190 v~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~ 269 (596)
..+..+ ........+...+...++ ..++|+||+|..........+... ..++|+++
T Consensus 53 ~~~~~~-----------------~~~~~~~~~~~~~~~~~~--~~~~Dii~~~~~~~~~~~~~~~~~-----~~~~~~~~ 108 (355)
T cd03799 53 ARTRYL-----------------ARSLALLAQALVLARELR--RLGIDHIHAHFGTTPATVAMLASR-----LGGIPYSF 108 (355)
T ss_pred cchHHH-----------------HHHHHHHHHHHHHHHHHH--hcCCCEEEECCCCchHHHHHHHHH-----hcCCCEEE
Confidence 000000 001111122223333332 368999999976443333222221 24789999
Q ss_pred EEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhh
Q 043397 270 TIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLI 349 (596)
Q Consensus 270 tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~ 349 (596)
++|+........ ..+++..++.+|.++++|+..++.+... ++
T Consensus 109 ~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~vi~~s~~~~~~l~~~------~~ 150 (355)
T cd03799 109 TAHGKDIFRSPD--------------------------------AIDLDEKLARADFVVAISEYNRQQLIRL------LG 150 (355)
T ss_pred EEecccccccCc--------------------------------hHHHHHHHhhCCEEEECCHHHHHHHHHh------cC
Confidence 999654311100 0123445677999999999999986532 23
Q ss_pred ccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHH
Q 043397 350 THRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIK 429 (596)
Q Consensus 350 ~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~ 429 (596)
.+..++.++|||+|.+.+.+... .. ..+.+.|+|+|++.+.||++.+++++.
T Consensus 151 ~~~~~~~vi~~~~d~~~~~~~~~--------------------------~~--~~~~~~i~~~g~~~~~k~~~~l~~~~~ 202 (355)
T cd03799 151 CDPDKIHVVHCGVDLERFPPRPP--------------------------PP--PGEPLRILSVGRLVEKKGLDYLLEALA 202 (355)
T ss_pred CCcccEEEEeCCcCHHHcCCccc--------------------------cc--cCCCeEEEEEeeeccccCHHHHHHHHH
Confidence 45779999999999877654410 00 145678999999999999999999999
Q ss_pred HHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCC------CCCchHHH
Q 043397 430 RAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIY------EPCGLAQM 501 (596)
Q Consensus 430 ~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~------E~~gl~~l 501 (596)
++.+ ++++|+|+|. |+..+.+++.+++++..++|++.|.++.+++..+|++||++++||.. |++|++++
T Consensus 203 ~l~~~~~~~~l~i~G~---~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~ 279 (355)
T cd03799 203 LLKDRGIDFRLDIVGD---GPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLM 279 (355)
T ss_pred HHhhcCCCeEEEEEEC---CccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHH
Confidence 9876 5899999999 88889999999999888899999999999999999999999999998 99999999
Q ss_pred HHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH---hcCC
Q 043397 502 IGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME---NDNS 578 (596)
Q Consensus 502 EAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~---~~fs 578 (596)
|||++|+|+|+++.|+.++++.+ +.+|+++++.|+++++++|.++++ +++.+.++++++.+ ++||
T Consensus 280 Ea~a~G~Pvi~~~~~~~~~~i~~--------~~~g~~~~~~~~~~l~~~i~~~~~----~~~~~~~~~~~a~~~~~~~~s 347 (355)
T cd03799 280 EAMAMGLPVISTDVSGIPELVED--------GETGLLVPPGDPEALADAIERLLD----DPELRREMGEAGRARVEEEFD 347 (355)
T ss_pred HHHHcCCCEEecCCCCcchhhhC--------CCceEEeCCCCHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999988 679999999999999999999998 88888888866554 7899
Q ss_pred HHHHHHH
Q 043397 579 WNNAAGK 585 (596)
Q Consensus 579 ~~~~~~~ 585 (596)
|+..+++
T Consensus 348 ~~~~~~~ 354 (355)
T cd03799 348 IRKQAAR 354 (355)
T ss_pred HHHHhhc
Confidence 9998875
No 47
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.5e-34 Score=301.67 Aligned_cols=361 Identities=20% Similarity=0.219 Sum_probs=257.8
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCC
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSS 189 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (596)
||++++..++| ..||.+.++..|+++|.++||+|+++++.......... ..
T Consensus 1 kIl~i~~~~~p--~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~---------------------------~~ 51 (364)
T cd03814 1 RIAIVTDTFLP--QVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPA---------------------------RV 51 (364)
T ss_pred CeEEEecccCc--cccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCC---------------------------Cc
Confidence 79999999988 45999999999999999999999999965432211000 00
Q ss_pred eEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEE
Q 043397 190 IPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVL 269 (596)
Q Consensus 190 v~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~ 269 (596)
+.+...... . ....... ......+...++ ..+||+||+++............. ..++|+++
T Consensus 52 ~~~~~~~~~-~-~~~~~~~----------~~~~~~~~~~~~--~~~pdii~~~~~~~~~~~~~~~~~-----~~~~~~i~ 112 (364)
T cd03814 52 VPVPSVPLP-G-YPEIRLA----------LPPRRRVRRLLD--AFAPDVVHIATPGPLGLAALRAAR-----RLGIPVVT 112 (364)
T ss_pred eeecccccC-c-ccceEec----------ccchhhHHHHHH--hcCCCEEEEeccchhhHHHHHHHH-----HcCCCEEE
Confidence 011000000 0 0000000 000111222222 368999999864432222221111 35899999
Q ss_pred EEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhh
Q 043397 270 TIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLI 349 (596)
Q Consensus 270 tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~ 349 (596)
++|+..+.... . ........ ....+.+..++.+|.++++|+...+.+...
T Consensus 113 ~~~~~~~~~~~------~--~~~~~~~~--------------~~~~~~~~~~~~~d~i~~~s~~~~~~~~~~-------- 162 (364)
T cd03814 113 SYHTDFPEYLR------Y--YGLGPLSW--------------LAWAYLRWFHNRADRVLVPSPSLADELRAR-------- 162 (364)
T ss_pred EEecChHHHhh------h--cccchHhH--------------hhHHHHHHHHHhCCEEEeCCHHHHHHHhcc--------
Confidence 99976531100 0 00000000 001234445677999999999888854332
Q ss_pred ccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHH
Q 043397 350 THRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIK 429 (596)
Q Consensus 350 ~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~ 429 (596)
...++.+++||+|...+.+.... ...+++++ . .+.++++|+|++.+.||++.++++++
T Consensus 163 -~~~~~~~~~~g~~~~~~~~~~~~------------------~~~~~~~~-~--~~~~~i~~~G~~~~~k~~~~~i~~~~ 220 (364)
T cd03814 163 -GFRRVRLWPRGVDTELFHPRRRD------------------EALRARLG-P--PDRPVLLYVGRLAPEKNLEALLDADL 220 (364)
T ss_pred -CCCceeecCCCccccccCccccc------------------HHHHHHhC-C--CCCeEEEEEeccccccCHHHHHHHHH
Confidence 24689999999998877654211 12233343 2 56788999999999999999999999
Q ss_pred HHHH-cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCC
Q 043397 430 RAEE-LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGA 508 (596)
Q Consensus 430 ~l~~-~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~ 508 (596)
++.+ ++++|+|+|. |+..+.++ +..++|.|+|.++.+++..+|++||++++||..|++|++++|||+||+
T Consensus 221 ~l~~~~~~~l~i~G~---~~~~~~~~------~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~ 291 (364)
T cd03814 221 PLRRRPPVRLVIVGD---GPARARLE------ARYPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGL 291 (364)
T ss_pred HhhhcCCceEEEEeC---CchHHHHh------ccCCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCC
Confidence 9976 5899999998 77665554 335689999999999999999999999999999999999999999999
Q ss_pred ceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--hcCCHHHHHHHH
Q 043397 509 VPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME--NDNSWNNAAGKY 586 (596)
Q Consensus 509 pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~ 586 (596)
|+|+++.++..+++.+ +.+|+++++.|.++++++|.++++ |++.+.++++++.+ .+|+|+++++++
T Consensus 292 PvI~~~~~~~~~~i~~--------~~~g~~~~~~~~~~l~~~i~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (364)
T cd03814 292 PVVAPDAGGPADIVTD--------GENGLLVEPGDAEAFAAALAALLA----DPELRRRMAARARAEAERRSWEAFLDNL 359 (364)
T ss_pred CEEEcCCCCchhhhcC--------CcceEEcCCCCHHHHHHHHHHHHc----CHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 9999999999999987 689999999999999999999998 99999999977766 589999999999
Q ss_pred HHHHH
Q 043397 587 MEIYN 591 (596)
Q Consensus 587 ~~iy~ 591 (596)
+++|+
T Consensus 360 ~~~~~ 364 (364)
T cd03814 360 LEAYR 364 (364)
T ss_pred HHhhC
Confidence 99984
No 48
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=100.00 E-value=2.4e-34 Score=301.75 Aligned_cols=384 Identities=20% Similarity=0.164 Sum_probs=271.6
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCC
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSS 189 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (596)
|||+++..++|. .||.+.++..++++|.++||+|+++++............ .......+
T Consensus 1 kIl~i~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~-------------------~~~~~~~~ 59 (394)
T cd03794 1 KILILSQYFPPE--LGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKG-------------------YKREEVDG 59 (394)
T ss_pred CEEEEecccCCc--cCCcceeHHHHHHHHHhCCceEEEEecCCCccccccccc-------------------ceEEecCC
Confidence 799999999874 499999999999999999999999996533221110000 00112456
Q ss_pred eEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCcc-chHHHHHHHHhhhccCCCCcEE
Q 043397 190 IPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQI-GALPLLYWDMYQSLSLKKPRIV 268 (596)
Q Consensus 190 v~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~-~~~~~~~~~~~~~~~~~~~pvv 268 (596)
+.++.++.... ..... ...+..+..+.......+.....+||+||++.+.. ...+...... ..++|++
T Consensus 60 ~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~-----~~~~~~i 128 (394)
T cd03794 60 VRVHRVPLPPY--KKNGL----LKRLLNYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLAR-----LKGAPFV 128 (394)
T ss_pred eEEEEEecCCC--Cccch----HHHHHhhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHH-----hcCCCEE
Confidence 77766652111 10000 01222333344444444332357899999997332 2222221111 3489999
Q ss_pred EEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhh
Q 043397 269 LTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVL 348 (596)
Q Consensus 269 ~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~ 348 (596)
+++|+..+......... ......+. ....+.+..++.+|.++++|+..++.+...
T Consensus 129 ~~~h~~~~~~~~~~~~~---~~~~~~~~---------------~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~------- 183 (394)
T cd03794 129 LEVRDLWPESAVALGLL---KNGSLLYR---------------LLRKLERLIYRRADAIVVISPGMREYLVRR------- 183 (394)
T ss_pred EEehhhcchhHHHccCc---cccchHHH---------------HHHHHHHHHHhcCCEEEEECHHHHHHHHhc-------
Confidence 99998765221111000 00000000 011234456778999999999999886522
Q ss_pred hccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHH
Q 043397 349 ITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAI 428 (596)
Q Consensus 349 ~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~ 428 (596)
..+..++.++|||+|...+.+.... .. ++..... .+.++++|+|++.++||++.+++++
T Consensus 184 ~~~~~~~~~i~~~~~~~~~~~~~~~------------------~~-~~~~~~~--~~~~~i~~~G~~~~~k~~~~l~~~~ 242 (394)
T cd03794 184 GVPPEKISVIPNGVDLELFKPPPAD------------------ES-LRKELGL--DDKFVVLYAGNIGRAQGLDTLLEAA 242 (394)
T ss_pred CCCcCceEEcCCCCCHHHcCCccch------------------hh-hhhccCC--CCcEEEEEecCcccccCHHHHHHHH
Confidence 2456799999999998766554211 00 1222222 5678899999999999999999999
Q ss_pred HHHHHc-CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCC-----chHHHH
Q 043397 429 KRAEEL-GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPC-----GLAQMI 502 (596)
Q Consensus 429 ~~l~~~-~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~-----gl~~lE 502 (596)
.++.+. +++|+|+|+ |...+.+.+.+...+. ++|.++|.++.+++..+|+.||++++|+..|++ |++++|
T Consensus 243 ~~l~~~~~~~l~i~G~---~~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~E 318 (394)
T cd03794 243 ALLKDRPDIRFLIVGD---GPEKEELKELAKALGL-DNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFE 318 (394)
T ss_pred HHHhhcCCeEEEEeCC---cccHHHHHHHHHHcCC-CcEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHH
Confidence 999764 899999999 8888888887666554 689999999999999999999999999998865 788999
Q ss_pred HHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH---hcCCH
Q 043397 503 GMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME---NDNSW 579 (596)
Q Consensus 503 Ama~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~---~~fs~ 579 (596)
||++|+|+|+++.++..+.+.+ +.+|+++++.|+++++++|.++++ |++.+.++++++.+ ++|||
T Consensus 319 a~~~G~pvi~~~~~~~~~~~~~--------~~~g~~~~~~~~~~l~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~s~ 386 (394)
T cd03794 319 YMAAGKPVLASVDGESAELVEE--------AGAGLVVPPGDPEALAAAILELLD----DPEERAEMGENGRRYVEEKFSR 386 (394)
T ss_pred HHHCCCcEEEecCCCchhhhcc--------CCcceEeCCCCHHHHHHHHHHHHh----ChHHHHHHHHHHHHHHHHhhcH
Confidence 9999999999999999999987 679999999999999999999998 99999999877654 58999
Q ss_pred HHHHHHHH
Q 043397 580 NNAAGKYM 587 (596)
Q Consensus 580 ~~~~~~~~ 587 (596)
+.++++|+
T Consensus 387 ~~~~~~~~ 394 (394)
T cd03794 387 EKLAERLL 394 (394)
T ss_pred HHHHHhcC
Confidence 99999873
No 49
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=100.00 E-value=2.9e-34 Score=306.03 Aligned_cols=369 Identities=14% Similarity=0.052 Sum_probs=248.4
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeC
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVS 188 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (596)
-||++++..+ +|.+.++..++++|+++||+|+|+++....... +. ....
T Consensus 4 ~~~~~~~~~~------~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~-~~------------------------~~~~ 52 (415)
T cd03816 4 KRVCVLVLGD------IGRSPRMQYHALSLAKHGWKVDLVGYLETPPHD-EI------------------------LSNP 52 (415)
T ss_pred cEEEEEEecc------cCCCHHHHHHHHHHHhcCceEEEEEecCCCCCH-HH------------------------hcCC
Confidence 4677777533 555777789999999999999999865322111 10 0135
Q ss_pred CeEEEEEcCCccccCCCcccCCChhhHHHHH-HHHHHHHHHHH--hhCCCCcEEEEcCCccch---HHHHHHHHhhhccC
Q 043397 189 SIPVIFIEPSNQFFKGKNVYGGSYNELEAYL-FFSRACLEWMQ--VTGVQPDIIHVHEWQIGA---LPLLYWDMYQSLSL 262 (596)
Q Consensus 189 gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~-~f~~~~~~~l~--~~~~~pDVIh~~~~~~~~---~~~~~~~~~~~~~~ 262 (596)
||.++.+........ ......++. .....+..++. ....+||+||+|+..... ++.++.. .
T Consensus 53 ~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~------~ 119 (415)
T cd03816 53 NITIHPLPPPPQRLN-------KLPFLLFAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCL------L 119 (415)
T ss_pred CEEEEECCCCccccc-------cchHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHH------H
Confidence 778777763210000 001111111 11111112111 113589999998744322 2222222 3
Q ss_pred CCCcEEEEEcCCCCCCcchhhhhhhcCCCc---hhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHh
Q 043397 263 KKPRIVLTIHNMEHYGECRQEQLSKCGLDG---SIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETL 339 (596)
Q Consensus 263 ~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~ 339 (596)
.++|+|+++|+.++... .. ..+... .++. .+.+..++.+|.|+++|+.+++.+.
T Consensus 120 ~~~~~V~~~h~~~~~~~----~~-~~~~~~~~~~~~~------------------~~e~~~~~~ad~ii~vS~~~~~~l~ 176 (415)
T cd03816 120 RRTKLIIDWHNYGYTIL----AL-KLGENHPLVRLAK------------------WYEKLFGRLADYNLCVTKAMKEDLQ 176 (415)
T ss_pred hCCeEEEEcCCchHHHH----hc-ccCCCCHHHHHHH------------------HHHHHHhhcCCEeeecCHHHHHHHH
Confidence 58899999998653100 00 000000 1111 1233345679999999999999875
Q ss_pred hcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHh-------------hcCCCCCCCc
Q 043397 340 CSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQK-------------GLGLKSEGTV 406 (596)
Q Consensus 340 ~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~-------------~l~l~~~~~~ 406 (596)
+. +.+.+++.+||||.+ ..|.|.... .......+ ..++. .++.
T Consensus 177 ~~-------~~~~~ki~vI~Ng~~-~~f~p~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 232 (415)
T cd03816 177 QF-------NNWKIRATVLYDRPP-EQFRPLPLE---------------EKHELFLKLAKTFLTRELRIGAVQLS-EERP 232 (415)
T ss_pred hh-------hccCCCeeecCCCCH-HHceeCcHH---------------HHHHHHHhccccccccccccccceec-CCCc
Confidence 42 356789999999944 555544210 00111110 11121 1345
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHH--------cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEE-eccCHHHH
Q 043397 407 PLVVCITRLVAQKGLHLITHAIKRAEE--------LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRIL-LMYSEELS 477 (596)
Q Consensus 407 ~~il~iGrl~~~KGi~~ll~A~~~l~~--------~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~-g~~~~~~l 477 (596)
.+++++||+.++||++.+++|++.+.+ ++++|+|+|+ |+..+.++++++++++. ++.++ |+++.+++
T Consensus 233 ~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~---G~~~~~l~~~~~~~~l~-~~~~~~g~~~~~~~ 308 (415)
T cd03816 233 ALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGK---GPLKEKYLERIKELKLK-KVTIRTPWLSAEDY 308 (415)
T ss_pred eEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEec---CccHHHHHHHHHHcCCC-cEEEEcCcCCHHHH
Confidence 678899999999999999999999864 3689999999 99999999999999986 55555 78999999
Q ss_pred HHHHHhCCEEEEcCC---CCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHH
Q 043397 478 HMLYAAADIVLVPSI---YEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRA 554 (596)
Q Consensus 478 ~~~~a~aDi~l~PS~---~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~l 554 (596)
..+|++||++++|+. .|++|++++||||||+|||+++.||..|++++ +.+|++++ |+++++++|.++
T Consensus 309 ~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~~--------~~~G~lv~--d~~~la~~i~~l 378 (415)
T cd03816 309 PKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVKH--------GENGLVFG--DSEELAEQLIDL 378 (415)
T ss_pred HHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhcC--------CCCEEEEC--CHHHHHHHHHHH
Confidence 999999999997543 47899999999999999999999999999998 78999994 899999999999
Q ss_pred HHhccCC---HHHHHHHHHHHHH-hcCCHHHHHHHH
Q 043397 555 FRHFIDK---PEEWNRIVQKIME-NDNSWNNAAGKY 586 (596)
Q Consensus 555 l~~~~~~---~~~~~~~~~~~~~-~~fs~~~~~~~~ 586 (596)
++ | ++.+.+|++++.+ ..++|++.-++.
T Consensus 379 l~----~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~ 410 (415)
T cd03816 379 LS----NFPNRGKLNSLKKGAQEESELRWDENWDRV 410 (415)
T ss_pred Hh----cCCCHHHHHHHHHHHHHhhhcCHHHHHHHH
Confidence 98 7 8999999988876 567776655443
No 50
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=100.00 E-value=2.9e-35 Score=285.30 Aligned_cols=366 Identities=16% Similarity=0.225 Sum_probs=270.3
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeC
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVS 188 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (596)
++|++++..|+| ..||++.++..|++.|.+.||.|.++|-.|.+.. +. +...+
T Consensus 1 ~~i~mVsdff~P--~~ggveshiy~lSq~li~lghkVvvithayg~r~-----gi--------------------rylt~ 53 (426)
T KOG1111|consen 1 SRILMVSDFFYP--STGGVESHIYALSQCLIRLGHKVVVITHAYGNRV-----GI--------------------RYLTN 53 (426)
T ss_pred CcceeeCccccc--CCCChhhhHHHhhcchhhcCCeEEEEeccccCcc-----ce--------------------eeecC
Confidence 579999999999 6799999999999999999999999996666541 11 12246
Q ss_pred CeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEE
Q 043397 189 SIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIV 268 (596)
Q Consensus 189 gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv 268 (596)
|+.||.++-...+ ++..+..-+.+ | -.+...+ ...+..|||.|+..+.+.=-.+ ...+.-|.++|
T Consensus 54 glkVyylp~~v~~--n~tT~ptv~~~------~-Pllr~i~--lrE~I~ivhghs~fS~lahe~l----~hartMGlktV 118 (426)
T KOG1111|consen 54 GLKVYYLPAVVGY--NQTTFPTVFSD------F-PLLRPIL--LRERIEIVHGHSPFSYLAHEAL----MHARTMGLKTV 118 (426)
T ss_pred CceEEEEeeeeee--cccchhhhhcc------C-cccchhh--hhhceEEEecCChHHHHHHHHH----HHHHhcCceEE
Confidence 7888887731111 11111100000 0 0011111 1258899999986554431111 11224579999
Q ss_pred EEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhh
Q 043397 269 LTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVL 348 (596)
Q Consensus 269 ~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~ 348 (596)
+|-|...-...... .... .++...+...|++||+|.+.++...-.|-
T Consensus 119 fTdHSlfGfad~~s----------i~~n------------------~ll~~sL~~id~~IcVshtskentvlr~~----- 165 (426)
T KOG1111|consen 119 FTDHSLFGFADIGS----------ILTN------------------KLLPLSLANIDRIICVSHTSKENTVLRGA----- 165 (426)
T ss_pred Eeccccccccchhh----------hhhc------------------ceeeeeecCCCcEEEEeecCCCceEEEec-----
Confidence 99998652211111 0000 23444566789999999988877654332
Q ss_pred hccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHH
Q 043397 349 ITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAI 428 (596)
Q Consensus 349 ~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~ 428 (596)
.+++++.+|||.++...|.|.... .+ +.+...++.++||..+||+|++++++
T Consensus 166 -L~p~kvsvIPnAv~~~~f~P~~~~--------------------------~~-S~~i~~ivv~sRLvyrKGiDll~~iI 217 (426)
T KOG1111|consen 166 -LAPAKVSVIPNAVVTHTFTPDAAD--------------------------KP-SADIITIVVASRLVYRKGIDLLLEII 217 (426)
T ss_pred -cCHhHeeeccceeeccccccCccc--------------------------cC-CCCeeEEEEEeeeeeccchHHHHHHH
Confidence 347899999999999999885321 01 12336799999999999999999999
Q ss_pred HHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhc
Q 043397 429 KRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRY 506 (596)
Q Consensus 429 ~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~ 506 (596)
.++-+ ++++|+|+|+ |+....+++..+++.++++|.++|.++.+++.+.|.+-|+|+.||.-|.||++++|||+|
T Consensus 218 p~vc~~~p~vrfii~GD---GPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaSc 294 (426)
T KOG1111|consen 218 PSVCDKHPEVRFIIIGD---GPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASC 294 (426)
T ss_pred HHHHhcCCCeeEEEecC---CcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHHHHHHHhC
Confidence 99865 7999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 043397 507 GAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIMENDNSWNNAAGKY 586 (596)
Q Consensus 507 G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~ 586 (596)
|++||++.+||++|++.+ +=......++++++++++.+++..+..|... .+.+.+.|+|+.++++.
T Consensus 295 GL~VVsTrVGGIpeVLP~----------d~i~~~~~~~~dl~~~v~~ai~~~~~~p~~~----h~~v~~~y~w~dVa~rT 360 (426)
T KOG1111|consen 295 GLPVVSTRVGGIPEVLPE----------DMITLGEPGPDDLVGAVEKAITKLRTLPLEF----HDRVKKMYSWKDVAERT 360 (426)
T ss_pred CCEEEEeecCCccccCCc----------cceeccCCChHHHHHHHHHHHHHhccCchhH----HHHHHHhccHHHHHHHH
Confidence 999999999999999976 2222334479999999999998665554432 23344679999999999
Q ss_pred HHHHHHHh
Q 043397 587 MEIYNSIR 594 (596)
Q Consensus 587 ~~iy~~l~ 594 (596)
.++|.++.
T Consensus 361 ekvy~r~~ 368 (426)
T KOG1111|consen 361 EKVYDRAA 368 (426)
T ss_pred HHHHHHHh
Confidence 99999875
No 51
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=100.00 E-value=1.7e-33 Score=292.18 Aligned_cols=369 Identities=26% Similarity=0.355 Sum_probs=272.5
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCC
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSS 189 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (596)
||++++..++|. .||.+.++..++++|.+.||+|.++++........... ..
T Consensus 1 kI~ii~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~--------------------------~~ 52 (374)
T cd03801 1 KILLVTPEYPPS--VGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEV--------------------------GG 52 (374)
T ss_pred CeeEEecccCCc--cCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeee--------------------------cC
Confidence 799999888773 69999999999999999999999999654432111000 00
Q ss_pred eEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEE
Q 043397 190 IPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVL 269 (596)
Q Consensus 190 v~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~ 269 (596)
....... ..... ........+.......+.. .+||+||++++........... ..++|+++
T Consensus 53 ~~~~~~~-~~~~~----------~~~~~~~~~~~~~~~~~~~--~~~Dii~~~~~~~~~~~~~~~~------~~~~~~i~ 113 (374)
T cd03801 53 IVVVRPP-PLLRV----------RRLLLLLLLALRLRRLLRR--ERFDVVHAHDWLALLAAALAAR------LLGIPLVL 113 (374)
T ss_pred cceecCC-ccccc----------chhHHHHHHHHHHHHHhhh--cCCcEEEEechhHHHHHHHHHH------hcCCcEEE
Confidence 0000000 00000 0001111222333333332 5899999998765544432221 46899999
Q ss_pred EEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhh
Q 043397 270 TIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLI 349 (596)
Q Consensus 270 tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~ 349 (596)
++|+..+...... ...... ......+..+..+|.++++|+...+.+...+ .
T Consensus 114 ~~h~~~~~~~~~~---------~~~~~~--------------~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~~------~ 164 (374)
T cd03801 114 TVHGLEFGRPGNE---------LGLLLK--------------LARALERRALRRADRIIAVSEATREELRELG------G 164 (374)
T ss_pred Eeccchhhccccc---------hhHHHH--------------HHHHHHHHHHHhCCEEEEecHHHHHHHHhcC------C
Confidence 9998875322110 000000 1122344556779999999999998876443 2
Q ss_pred ccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHH
Q 043397 350 THRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIK 429 (596)
Q Consensus 350 ~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~ 429 (596)
....++.++|||+|...+.+.. ...+...... .+.+.++|+|++.+.||++.+++++.
T Consensus 165 ~~~~~~~~i~~~~~~~~~~~~~--------------------~~~~~~~~~~--~~~~~i~~~g~~~~~k~~~~~i~~~~ 222 (374)
T cd03801 165 VPPEKITVIPNGVDTERFRPAP--------------------RAARRRLGIP--EDEPVILFVGRLVPRKGVDLLLEALA 222 (374)
T ss_pred CCCCcEEEecCcccccccCccc--------------------hHHHhhcCCc--CCCeEEEEecchhhhcCHHHHHHHHH
Confidence 2346899999999988765431 1111222222 56789999999999999999999999
Q ss_pred HHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcC
Q 043397 430 RAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYG 507 (596)
Q Consensus 430 ~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G 507 (596)
.+.+ ++++|+|+|+ +...+.+++.+++++..++|.+.|.++.+++..+|+.||++++|+..|++|++++|||++|
T Consensus 223 ~~~~~~~~~~l~i~G~---~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g 299 (374)
T cd03801 223 KLRKEYPDVRLVIVGD---GPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAG 299 (374)
T ss_pred HHhhhcCCeEEEEEeC---cHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHcC
Confidence 9876 4799999998 8888899998888888889999999999999999999999999999999999999999999
Q ss_pred CceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH---HhcCCHHHHHH
Q 043397 508 AVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIM---ENDNSWNNAAG 584 (596)
Q Consensus 508 ~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~---~~~fs~~~~~~ 584 (596)
+|+|+++.++..+.+.+ +.+|+++++.|+++++++|.++++ +++.+.++++++. .+.|+|+++++
T Consensus 300 ~pvI~~~~~~~~~~~~~--------~~~g~~~~~~~~~~l~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (374)
T cd03801 300 LPVVASDVGGIPEVVED--------GETGLLVPPGDPEALAEAILRLLD----DPELRRRLGEAARERVAERFSWDRVAA 367 (374)
T ss_pred CcEEEeCCCChhHHhcC--------CcceEEeCCCCHHHHHHHHHHHHc----ChHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999999987 689999999999999999999998 8898899887765 48999999999
Q ss_pred HHHHHHH
Q 043397 585 KYMEIYN 591 (596)
Q Consensus 585 ~~~~iy~ 591 (596)
++.++|+
T Consensus 368 ~~~~~~~ 374 (374)
T cd03801 368 RTEEVYY 374 (374)
T ss_pred HHHHhhC
Confidence 9999874
No 52
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=100.00 E-value=1.1e-33 Score=301.55 Aligned_cols=384 Identities=15% Similarity=0.054 Sum_probs=247.7
Q ss_pred EEEEeeccccccccc-CHHHHHhHHHHHHHhc--CCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeee
Q 043397 111 IIHITAEMAPIAKVG-GLGDVVTGLARACLSR--GHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVV 187 (596)
Q Consensus 111 Il~is~~~~P~~~~G-G~~~~~~~La~aL~~~--Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (596)
|.|+. |+...| |.++++.+.+.+|.++ ||+|+++|..+........+. ....|... ..
T Consensus 3 ~~f~h----p~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~--~~~~f~~~-------------~~ 63 (419)
T cd03806 3 VGFFH----PYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEK--VESRFNIE-------------LD 63 (419)
T ss_pred EEEEC----CCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHH--HHHhcCee-------------cC
Confidence 55554 444556 9999999999999998 899999997765432111100 00011111 12
Q ss_pred CCeEEEEEc-CCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhh-CCCCcEEEEcCCccchHHHHHHHHhhhccCCCC
Q 043397 188 SSIPVIFIE-PSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVT-GVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKP 265 (596)
Q Consensus 188 ~gv~v~~~~-~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~-~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (596)
+++.++++. ....+ ....++. +.....+...+...++.. +.+||||..+...+..+++... +.+.
T Consensus 64 ~~~~~~~~~~~~~~~--~~~~~~r----~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~~~~~~~-------~~~~ 130 (419)
T cd03806 64 RPRIVFFLLKYRKLV--EASTYPR----FTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFTYPLVRL-------LGGC 130 (419)
T ss_pred CCceEEEEecceeee--ccccCCc----eeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHH-------hcCC
Confidence 444544431 00000 1111111 001112222333333322 3589999888644444444321 3578
Q ss_pred cEEEEEcCCCCCCcchhhhhhhcCC----------CchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhH
Q 043397 266 RIVLTIHNMEHYGECRQEQLSKCGL----------DGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYL 335 (596)
Q Consensus 266 pvv~tiH~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~ 335 (596)
|+|+.+| +|............+. ....... .+.+.. .-...+++..++.+|.++++|+..+
T Consensus 131 ~~i~y~h--~P~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~-~k~~y~------~~~~~~~~~~~~~aD~ii~~S~~~~ 201 (419)
T cd03806 131 PVGAYVH--YPTISTDMLQKVRSREASYNNSATIARSPVLSK-AKLLYY------RLFAFLYGLAGSFADVVMVNSTWTR 201 (419)
T ss_pred eEEEEec--CCcchHHHHHHHhhccccccCccchhccchHHH-HHHHHH------HHHHHHHHHHhhcCCEEEECCHHHH
Confidence 9999999 3321111100000110 0000000 000000 0111245667788999999999888
Q ss_pred HHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecc
Q 043397 336 KETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRL 415 (596)
Q Consensus 336 ~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl 415 (596)
+.+.+.+ .. ..++.+|+||+|.+.+.+... .. ..+.++|+|+||+
T Consensus 202 ~~~~~~~------~~-~~~~~vi~~gvd~~~~~~~~~--------------------------~~--~~~~~~il~vgr~ 246 (419)
T cd03806 202 NHIRSLW------KR-NTKPSIVYPPCDVEELLKLPL--------------------------DE--KTRENQILSIAQF 246 (419)
T ss_pred HHHHHHh------Cc-CCCcEEEcCCCCHHHhccccc--------------------------cc--ccCCcEEEEEEee
Confidence 8865432 11 248999999999876643310 00 1456799999999
Q ss_pred cccCCHHHHHHHHHHHHH--c-----CCEEEEEecCCC---CcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCC
Q 043397 416 VAQKGLHLITHAIKRAEE--L-----GGQMILLGNSPV---HWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAAD 485 (596)
Q Consensus 416 ~~~KGi~~ll~A~~~l~~--~-----~~~lvIvG~~~~---g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aD 485 (596)
.+.||++.+++|+.++.+ + +++|+|+|+..+ +.+.++++++++++++.++|+|+|.++.+++..+|+.||
T Consensus 247 ~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~ad 326 (419)
T cd03806 247 RPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTAS 326 (419)
T ss_pred cCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCe
Confidence 999999999999999875 2 489999998211 135677888999999989999999999999999999999
Q ss_pred EEEEcCCCCCCchHHHHHHhcCCceEEeCCCCc-ccccc---ccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCC
Q 043397 486 IVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGL-ADTVF---DVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDK 561 (596)
Q Consensus 486 i~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~-~e~i~---~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~ 561 (596)
++++||..|+||++++||||||+|||+++.||. .|++. + +.+|++++ |+++++++|.++++ +
T Consensus 327 v~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~--------g~~G~l~~--d~~~la~ai~~ll~----~ 392 (419)
T cd03806 327 IGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDG--------GPTGFLAS--TAEEYAEAIEKILS----L 392 (419)
T ss_pred EEEECCccCCcccHHHHHHHcCCcEEEEcCCCCchheeeccCC--------CCceEEeC--CHHHHHHHHHHHHh----C
Confidence 999999999999999999999999999999884 57887 5 68999985 99999999999998 4
Q ss_pred HH-HHHHHHHHH--HHhcCCHHHHHH
Q 043397 562 PE-EWNRIVQKI--MENDNSWNNAAG 584 (596)
Q Consensus 562 ~~-~~~~~~~~~--~~~~fs~~~~~~ 584 (596)
++ .+..+++++ ..++|||+.+.+
T Consensus 393 ~~~~~~~~~~~~~~~~~~fs~~~f~~ 418 (419)
T cd03806 393 SEEERLRIRRAARSSVKRFSDEEFER 418 (419)
T ss_pred CHHHHHHHHHHHHHHHHhhCHHHhcc
Confidence 43 344443322 337899998754
No 53
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=100.00 E-value=7.1e-34 Score=296.86 Aligned_cols=361 Identities=18% Similarity=0.207 Sum_probs=257.5
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCC
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSS 189 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (596)
||++++..+.|. ..||+++++.+|+++|.+.||+|+++++............. .
T Consensus 1 ~ili~~~~~~~~-~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~-------------------------~ 54 (365)
T cd03809 1 RILIDARFLASR-RPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRA-------------------------A 54 (365)
T ss_pred CEEEechhhhcC-CCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchh-------------------------c
Confidence 689998888764 57999999999999999999999999966443321111000 0
Q ss_pred eEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEE
Q 043397 190 IPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVL 269 (596)
Q Consensus 190 v~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~ 269 (596)
... ......... ................ ..+||+||++++..... + ..++|+++
T Consensus 55 ~~~--~~~~~~~~~-----------~~~~~~~~~~~~~~~~--~~~~Dii~~~~~~~~~~----~-------~~~~~~i~ 108 (365)
T cd03809 55 LRL--LLRLPRRLL-----------WGLLFLLRAGDRLLLL--LLGLDLLHSPHNTAPLL----R-------LRGVPVVV 108 (365)
T ss_pred ccc--ccccccccc-----------cchhhHHHHHHHHHhh--hcCCCeeeecccccCcc----c-------CCCCCEEE
Confidence 000 000000000 0001111111111111 26899999998665443 1 46899999
Q ss_pred EEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhh
Q 043397 270 TIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLI 349 (596)
Q Consensus 270 tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~ 349 (596)
++|+..+...... ....... ....+.+..++.+|.++++|+..++.+.. .+.
T Consensus 109 ~~hd~~~~~~~~~--------~~~~~~~--------------~~~~~~~~~~~~~d~~i~~s~~~~~~~~~------~~~ 160 (365)
T cd03809 109 TIHDLIPLRFPEY--------FSPGFRR--------------YFRRLLRRALRRADAIITVSEATKRDLLR------YLG 160 (365)
T ss_pred EeccchhhhCccc--------CCHHHHH--------------HHHHHHHHHHHHcCEEEEccHHHHHHHHH------HhC
Confidence 9998765221100 0000000 11234556678899999999999988643 233
Q ss_pred ccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHH
Q 043397 350 THRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIK 429 (596)
Q Consensus 350 ~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~ 429 (596)
.+..++.++|||+|...+.+..+. . +...... .+.++|+|+||+.+.||++.+++++.
T Consensus 161 ~~~~~~~vi~~~~~~~~~~~~~~~-------------------~-~~~~~~~--~~~~~i~~~G~~~~~K~~~~~l~~~~ 218 (365)
T cd03809 161 VPPDKIVVIPLGVDPRFRPPPAEA-------------------E-VLRALYL--LPRPYFLYVGTIEPRKNLERLLEAFA 218 (365)
T ss_pred cCHHHEEeeccccCccccCCCchH-------------------H-HHHHhcC--CCCCeEEEeCCCccccCHHHHHHHHH
Confidence 456789999999998776544210 0 1222222 56789999999999999999999999
Q ss_pred HHHHc--CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcC
Q 043397 430 RAEEL--GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYG 507 (596)
Q Consensus 430 ~l~~~--~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G 507 (596)
.+.+. +++|+|+|.. +..........++++..++|+++|.++++++..+|++||++++||.+|++|++++|||++|
T Consensus 219 ~~~~~~~~~~l~i~G~~--~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G 296 (365)
T cd03809 219 RLPAKGPDPKLVIVGKR--GWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACG 296 (365)
T ss_pred HHHHhcCCCCEEEecCC--ccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCC
Confidence 99774 5899999972 1222333333366777889999999999999999999999999999999999999999999
Q ss_pred CceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--hcCCHHHHHHH
Q 043397 508 AVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME--NDNSWNNAAGK 585 (596)
Q Consensus 508 ~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~ 585 (596)
+|||+++.|++.|++.+ +|+++.+.|.++++++|.++++ |++.+.++++++.+ ++|||++++++
T Consensus 297 ~pvI~~~~~~~~e~~~~----------~~~~~~~~~~~~~~~~i~~l~~----~~~~~~~~~~~~~~~~~~~sw~~~~~~ 362 (365)
T cd03809 297 TPVIASNISSLPEVAGD----------AALYFDPLDPEALAAAIERLLE----DPALREELRERGLARAKRFSWEKTARR 362 (365)
T ss_pred CcEEecCCCCccceecC----------ceeeeCCCCHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999854 7999999999999999999988 99999999877643 78999999999
Q ss_pred HHH
Q 043397 586 YME 588 (596)
Q Consensus 586 ~~~ 588 (596)
+++
T Consensus 363 ~~~ 365 (365)
T cd03809 363 TLD 365 (365)
T ss_pred HhC
Confidence 863
No 54
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=100.00 E-value=5.5e-33 Score=286.62 Aligned_cols=341 Identities=20% Similarity=0.177 Sum_probs=250.7
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCC
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSS 189 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (596)
||++++..+.| .||.++++..++++|.+.||+|++++.......... ...+
T Consensus 1 kI~i~~~~~~~---~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~--------------------------~~~~ 51 (348)
T cd03820 1 KILFVIPSLGN---AGGAERVLSNLANALAEKGHEVTIISLDKGEPPFYE--------------------------LDPK 51 (348)
T ss_pred CeEEEeccccC---CCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCccc--------------------------cCCc
Confidence 68999988764 599999999999999999999999996544300000 0123
Q ss_pred eEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCC-CcEE
Q 043397 190 IPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKK-PRIV 268 (596)
Q Consensus 190 v~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~-~pvv 268 (596)
+.+..+...... . ......+...+.++++. .+||+||++.+. .... +... ..+ +|++
T Consensus 52 ~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~l~~--~~~d~i~~~~~~--~~~~-~~~~-----~~~~~~~i 109 (348)
T cd03820 52 IKVIDLGDKRDS-K-----------LLARFKKLRRLRKLLKN--NKPDVVISFLTS--LLTF-LASL-----GLKIVKLI 109 (348)
T ss_pred cceeeccccccc-c-----------hhccccchHHHHHhhcc--cCCCEEEEcCch--HHHH-HHHH-----hhccccEE
Confidence 333333311000 0 00011122333344432 699999999766 1111 1111 123 5999
Q ss_pred EEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhh
Q 043397 269 LTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVL 348 (596)
Q Consensus 269 ~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~ 348 (596)
.+.|+......... ......+..++.+|.++++|+..+... .
T Consensus 110 ~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~d~ii~~s~~~~~~~---------~ 151 (348)
T cd03820 110 VSEHNSPDAYKKRL-----------------------------RRLLLRRLLYRRADAVVVLTEEDRALY---------Y 151 (348)
T ss_pred EecCCCccchhhhh-----------------------------HHHHHHHHHHhcCCEEEEeCHHHHHHh---------h
Confidence 99997653211000 000124556777999999999776221 2
Q ss_pred hccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHH
Q 043397 349 ITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAI 428 (596)
Q Consensus 349 ~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~ 428 (596)
.....++.++|||++...+.+. . ..+.+.++|+|++.+.||++.+++++
T Consensus 152 ~~~~~~~~vi~~~~~~~~~~~~-----------------------------~--~~~~~~i~~~g~~~~~K~~~~l~~~~ 200 (348)
T cd03820 152 KKFNKNVVVIPNPLPFPPEEPS-----------------------------S--DLKSKRILAVGRLVPQKGFDLLIEAW 200 (348)
T ss_pred ccCCCCeEEecCCcChhhcccc-----------------------------C--CCCCcEEEEEEeeccccCHHHHHHHH
Confidence 2346789999999997654322 0 15678999999999999999999999
Q ss_pred HHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhc
Q 043397 429 KRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRY 506 (596)
Q Consensus 429 ~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~ 506 (596)
+.+.+ ++++|+|+|+ +...+.+++++++++..++|.+.|. .+++..+|++||++++||.+|++|++++|||++
T Consensus 201 ~~l~~~~~~~~l~i~G~---~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~ 275 (348)
T cd03820 201 AKIAKKHPDWKLRIVGD---GPEREALEALIKELGLEDRVILLGF--TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAF 275 (348)
T ss_pred HHHHhcCCCeEEEEEeC---CCCHHHHHHHHHHcCCCCeEEEcCC--cchHHHHHHhCCEEEeCccccccCHHHHHHHHc
Confidence 99974 6889999999 8888889999999999889999998 566999999999999999999999999999999
Q ss_pred CCceEEeCCCC-ccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--hcCCHHHHH
Q 043397 507 GAVPVVRKTGG-LADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME--NDNSWNNAA 583 (596)
Q Consensus 507 G~pvI~s~~gg-~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~--~~fs~~~~~ 583 (596)
|+|+|+++.++ ..+++.+ +.+|+++++.|+++++++|.++++ |++.+++|++++.+ ++|+|++++
T Consensus 276 G~Pvi~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~~i~~ll~----~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (348)
T cd03820 276 GLPVISFDCPTGPSEIIED--------GVNGLLVPNGDVEALAEALLRLME----DEELRKRMGANARESAERFSIENII 343 (348)
T ss_pred CCCEEEecCCCchHhhhcc--------CcceEEeCCCCHHHHHHHHHHHHc----CHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 99999998765 5666665 469999999999999999999998 99999999977643 789999999
Q ss_pred HHHH
Q 043397 584 GKYM 587 (596)
Q Consensus 584 ~~~~ 587 (596)
++|.
T Consensus 344 ~~~~ 347 (348)
T cd03820 344 KQWE 347 (348)
T ss_pred HHhc
Confidence 9885
No 55
>PLN02949 transferase, transferring glycosyl groups
Probab=100.00 E-value=1e-32 Score=294.83 Aligned_cols=235 Identities=16% Similarity=0.085 Sum_probs=189.1
Q ss_pred hhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHH
Q 043397 316 LLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQ 395 (596)
Q Consensus 316 ~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~ 395 (596)
+++...+.+|.|++.|+..++.+.+. +.. ..++.+++||+|...+.....
T Consensus 213 l~~~~~~~ad~ii~nS~~t~~~l~~~------~~~-~~~i~vvyp~vd~~~~~~~~~----------------------- 262 (463)
T PLN02949 213 MYGLVGRCAHLAMVNSSWTKSHIEAL------WRI-PERIKRVYPPCDTSGLQALPL----------------------- 262 (463)
T ss_pred HHHHHcCCCCEEEECCHHHHHHHHHH------cCC-CCCeEEEcCCCCHHHcccCCc-----------------------
Confidence 34555678999999999988886542 222 357899999999765421100
Q ss_pred hhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHH------cCCEEEEEecCC---CCcchHHHHHHHHHcCCCCcE
Q 043397 396 KGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE------LGGQMILLGNSP---VHWVQKDFEDLANLHNKGTST 466 (596)
Q Consensus 396 ~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~------~~~~lvIvG~~~---~g~~~~~l~~~~~~~~~~~~V 466 (596)
....+.+.++++||+.++||++.+|+|+.++.+ ++++|+|+|+.. ++++.++++++++++++.++|
T Consensus 263 -----~~~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V 337 (463)
T PLN02949 263 -----ERSEDPPYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDV 337 (463)
T ss_pred -----cccCCCCEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcE
Confidence 001345789999999999999999999998754 478999999821 123446788999999999999
Q ss_pred EEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCcc-ccccccCCCCCCCccceEEEeCCCHH
Q 043397 467 RILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLA-DTVFDVDDPSNHEKANGFVFEGIDEG 545 (596)
Q Consensus 467 ~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~-e~i~~~~~~~~~~~~~G~lv~~~d~~ 545 (596)
.|+|.++.+++..+|+.||++++||..|+||++++|||++|+|||+++.||.. |++.+.+. +.+|++++ |++
T Consensus 338 ~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~-----g~tG~l~~--~~~ 410 (463)
T PLN02949 338 EFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDG-----QQTGFLAT--TVE 410 (463)
T ss_pred EEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecCCC-----CcccccCC--CHH
Confidence 99999999999999999999999999999999999999999999999999964 77754211 46899985 899
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHhc
Q 043397 546 SLNWALDRAFRHFIDKPEEWNRIVQKIME--NDNSWNNAAGKYMEIYNSIRV 595 (596)
Q Consensus 546 ~la~~i~~ll~~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~iy~~l~~ 595 (596)
+++++|.++++. +++.+.+|++++.+ ++|||+++++++.++|+++++
T Consensus 411 ~la~ai~~ll~~---~~~~r~~m~~~ar~~~~~FS~e~~~~~~~~~i~~l~~ 459 (463)
T PLN02949 411 EYADAILEVLRM---RETERLEIAAAARKRANRFSEQRFNEDFKDAIRPILN 459 (463)
T ss_pred HHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 999999999972 46777788766544 679999999999999998764
No 56
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=100.00 E-value=1e-32 Score=287.31 Aligned_cols=371 Identities=26% Similarity=0.329 Sum_probs=266.3
Q ss_pred EEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCCe
Q 043397 111 IIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSSI 190 (596)
Q Consensus 111 Il~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 190 (596)
||+++..++|. ..||.+.++..++++|.+.||+|+++++............... ....
T Consensus 1 iLii~~~~p~~-~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~---------------------~~~~ 58 (377)
T cd03798 1 ILVISSLYPPP-NNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRL---------------------VGVE 58 (377)
T ss_pred CeEeccCCCCC-CCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhccccc---------------------cccc
Confidence 67888877653 3699999999999999999999999996533321111000000 0000
Q ss_pred EEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccch-HHHHHHHHhhhccCCCCcEEE
Q 043397 191 PVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGA-LPLLYWDMYQSLSLKKPRIVL 269 (596)
Q Consensus 191 ~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~-~~~~~~~~~~~~~~~~~pvv~ 269 (596)
...... ...... ........+...+...++....+||+||+|...... +...+.. ..++|+++
T Consensus 59 ~~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~------~~~~~~i~ 122 (377)
T cd03798 59 RLPVLL-PVVPLL---------KGPLLYLLAARALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKR------KLGIPLVV 122 (377)
T ss_pred ccccCc-chhhcc---------ccchhHHHHHHHHHHHHhcccCCCCEEEEeccchHHHHHHHHHH------hcCCCEEE
Confidence 000000 000000 001112234444455554234799999999533322 2222221 35689999
Q ss_pred EEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhh
Q 043397 270 TIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLI 349 (596)
Q Consensus 270 tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~ 349 (596)
++|+......... .. .....+..+..+|.++++|+..++.+...+
T Consensus 123 ~~h~~~~~~~~~~----------~~------------------~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~------- 167 (377)
T cd03798 123 TLHGSDVNLLPRK----------RL------------------LRALLRRALRRADAVIAVSEALADELKALG------- 167 (377)
T ss_pred EeecchhcccCch----------hh------------------HHHHHHHHHhcCCeEEeCCHHHHHHHHHhc-------
Confidence 9998765221100 00 112344556779999999999988865431
Q ss_pred ccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHH
Q 043397 350 THRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIK 429 (596)
Q Consensus 350 ~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~ 429 (596)
.+..++.+++||+|...+.+.... .. ++++.. .+.++++++|++.+.||++.++++++
T Consensus 168 ~~~~~~~~i~~~~~~~~~~~~~~~-------------------~~-~~~~~~--~~~~~i~~~g~~~~~k~~~~li~~~~ 225 (377)
T cd03798 168 IDPEKVTVIPNGVDTERFSPADRA-------------------EA-RKLGLP--EDKKVILFVGRLVPRKGIDYLIEALA 225 (377)
T ss_pred CCCCceEEcCCCcCcccCCCcchH-------------------HH-HhccCC--CCceEEEEeccCccccCHHHHHHHHH
Confidence 357899999999998877654211 00 222332 56789999999999999999999999
Q ss_pred HHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcC
Q 043397 430 RAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYG 507 (596)
Q Consensus 430 ~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G 507 (596)
.+.+ ++++|+|+|. +...+.+++.++.++..++|.+.|.++++++..+|+.||++++||..|++|++++|||++|
T Consensus 226 ~~~~~~~~~~l~i~g~---~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G 302 (377)
T cd03798 226 RLLKKRPDVHLVIVGD---GPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACG 302 (377)
T ss_pred HHHhcCCCeEEEEEcC---CcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcC
Confidence 9876 4799999999 8888888899888888889999999999999999999999999999999999999999999
Q ss_pred CceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHH---HHHHhcCCHHHHHH
Q 043397 508 AVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQ---KIMENDNSWNNAAG 584 (596)
Q Consensus 508 ~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~---~~~~~~fs~~~~~~ 584 (596)
+|+|+++.|+..+++.+ +.+|+++++.|+++++++|.++++ ++.. ++.+ +...+.|+|+.+++
T Consensus 303 ~pvI~~~~~~~~~~~~~--------~~~g~~~~~~~~~~l~~~i~~~~~----~~~~--~~~~~~~~~~~~~~s~~~~~~ 368 (377)
T cd03798 303 LPVVATDVGGIPEIITD--------GENGLLVPPGDPEALAEAILRLLA----DPWL--RLGRAARRRVAERFSWENVAE 368 (377)
T ss_pred CCEEEecCCChHHHhcC--------CcceeEECCCCHHHHHHHHHHHhc----CcHH--HHhHHHHHHHHHHhhHHHHHH
Confidence 99999999999999988 678999999999999999999998 6654 3333 33347999999999
Q ss_pred HHHHHHHHH
Q 043397 585 KYMEIYNSI 593 (596)
Q Consensus 585 ~~~~iy~~l 593 (596)
++.++|+++
T Consensus 369 ~~~~~~~~l 377 (377)
T cd03798 369 RLLELYREV 377 (377)
T ss_pred HHHHHHhhC
Confidence 999999864
No 57
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=100.00 E-value=1.9e-32 Score=302.54 Aligned_cols=467 Identities=16% Similarity=0.202 Sum_probs=338.6
Q ss_pred eEEEEeeccc-----ccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhh-----------hhhcc-----cc----
Q 043397 110 HIIHITAEMA-----PIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQK-----------QEISD-----LA---- 164 (596)
Q Consensus 110 kIl~is~~~~-----P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~-----------~~~~~-----~~---- 164 (596)
-++++|.||. |. ..||+|+.+.+..++++..|..+.-++-.|...-- +..+. +.
T Consensus 87 ~~aYFs~E~gl~~~lpi-YsGGLG~LAgd~lksasdLg~P~vgvGllY~~GyF~Q~i~~dG~Q~e~~~~~~~~~~p~~~~ 165 (778)
T cd04299 87 VAAYFSMEFGLHESLPI-YSGGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADGWQQETYPVNDFEQLPLEPV 165 (778)
T ss_pred eeEEeccccccCCCCCc-cCchHHHHHHHHHHHHHhCCCCEEEEEeCcCCCCeEEEECCCCceeecCCCcCCCCCceEEE
Confidence 3459999883 54 68999999999999999999999888854421110 00000 00
Q ss_pred -----eeeeEEeecCCceEEEEEEeeeeCCeEEEEEcCCc---cccCCC---cccCCCh-hhHHHHHHHHHHHHHHHHhh
Q 043397 165 -----LITTYNSYHDGNWVATNAYHGVVSSIPVIFIEPSN---QFFKGK---NVYGGSY-NELEAYLFFSRACLEWMQVT 232 (596)
Q Consensus 165 -----~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~---~~~~~~---~~y~~~~-~~~~~~~~f~~~~~~~l~~~ 232 (596)
....+.++..+.....++|.....++++|+++... ..+.+. .+|+++. ..+.++.+|+.+..+.++..
T Consensus 166 ~~~~G~~~~v~v~l~g~~v~~rvw~~~vg~v~lylLDtd~~~n~~~~R~iT~~LYg~D~~~Rl~Qe~~Lg~agl~~Lr~l 245 (778)
T cd04299 166 RDADGEPVRVSVELPGRTVYARVWKAQVGRVPLYLLDTDIPENSPDDRGITDRLYGGDQETRIQQEILLGIGGVRALRAL 245 (778)
T ss_pred ecCCCCeEEEEEeeCCCceEEEEEEEEcCCCCEEEecCCccccchhhcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 01256677777888999999999999999999532 133333 5788653 23333688999999999887
Q ss_pred CCCCcEEEEcCCccchHHH-----HHHHH-hh---hccCCCCcEEEEEcCCCCCC--cchhhhhhh--------cCCCch
Q 043397 233 GVQPDIIHVHEWQIGALPL-----LYWDM-YQ---SLSLKKPRIVLTIHNMEHYG--ECRQEQLSK--------CGLDGS 293 (596)
Q Consensus 233 ~~~pDVIh~~~~~~~~~~~-----~~~~~-~~---~~~~~~~pvv~tiH~~~~~~--~~~~~~~~~--------~~~~~~ 293 (596)
+.+|||||+|+||++++++ ++... +. +....+..+|+|+|+..++| .++...+.+ .++...
T Consensus 246 g~~pdViH~ND~Haal~~lE~~R~ll~~~g~~~~~A~e~vr~~tvFTtHTpvpqG~d~Fp~~l~~~~~~~~~~~lgl~~~ 325 (778)
T cd04299 246 GIKPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEALEAVRASTVFTTHTPVPAGHDRFPPDLVERYFGPYARELGLSRD 325 (778)
T ss_pred CCCCeEEEeCCCcHHHHHHHHHHHHHHHcCCCHHHHHHhhCCeEEEecCCchHHHhhhCCHHHHHHHhhHHHHHcCCCHH
Confidence 7899999999999999998 33211 10 01123578999999999988 676655532 455544
Q ss_pred hhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhh---HHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcC-C
Q 043397 294 IYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTY---LKETLCSGWLASVLITHRDKYFGILNGIDTVIWN-P 369 (596)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~---~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~-p 369 (596)
.+........ ....+.+++.+.+++.|+.|.+||+.+ .+++... +...+.....++..|.||||...|. |
T Consensus 326 ~~~~lg~e~~----~~~~~~~nM~~laL~~S~~vNgVS~lHg~vsr~mf~~--~~~g~p~~~~~i~~ITNGVh~~~W~~P 399 (778)
T cd04299 326 RFLALGRENP----GDDPEPFNMAVLALRLAQRANGVSRLHGEVSREMFAG--LWPGFPVEEVPIGHVTNGVHVPTWVAP 399 (778)
T ss_pred HHhhhccccc----cCccCceeHHHHHHHhcCeeeeecHHHHHHHHHHhhh--hhccCCcccCceeceeCCcchhhhcCH
Confidence 3332211110 011356899999999999999999987 4443211 1111122245799999999999998 7
Q ss_pred CCcCCCccc---------------------cCCCCchhhhhhHHHHHhhc---------------------CCCCCCCcc
Q 043397 370 ATDAFLPAK---------------------FHAQKPEGKKICKYYIQKGL---------------------GLKSEGTVP 407 (596)
Q Consensus 370 ~~~~~~~~~---------------------~~~~~~~~k~~~k~~~~~~l---------------------~l~~~~~~~ 407 (596)
..+..+... ++....+.|..+|..+.+.+ +.+.+++.+
T Consensus 400 ~~~~l~~~~~g~~w~~~~~~~~~~~~~~~i~d~~lw~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~~~~ldpd~l 479 (778)
T cd04299 400 EMRELYDRYLGGDWRERPTDPELWEAVDDIPDEELWEVRQQLRRRLIEFVRRRLRRQWLRRGASAEEIGEADDVLDPNVL 479 (778)
T ss_pred HHHHHHHHhcCcchhhccchHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCchhhhhhcCCccCCCcc
Confidence 665544211 22222567777887776553 444567888
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHH------cCCEEEEEecCCCC-----cchHHHHHHHHHcCCCCcEEEEeccCHHH
Q 043397 408 LVVCITRLVAQKGLHLITHAIKRAEE------LGGQMILLGNSPVH-----WVQKDFEDLANLHNKGTSTRILLMYSEEL 476 (596)
Q Consensus 408 ~il~iGrl~~~KGi~~ll~A~~~l~~------~~~~lvIvG~~~~g-----~~~~~l~~~~~~~~~~~~V~~~g~~~~~~ 476 (596)
+++|++|+..+||.+++++.++++.+ .+++|+++|+.-.+ ...+.+.++++.....++|.|+-.++.+.
T Consensus 480 tigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVvfle~Yd~~l 559 (778)
T cd04299 480 TIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIVFLEDYDMAL 559 (778)
T ss_pred EEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEEEEcCCCHHH
Confidence 99999999999999999999888854 46899999993111 12234555555444456899999999999
Q ss_pred HHHHHHhCCEEEEcCC--CCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeC------------C
Q 043397 477 SHMLYAAADIVLVPSI--YEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEG------------I 542 (596)
Q Consensus 477 l~~~~a~aDi~l~PS~--~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~------------~ 542 (596)
...++++||+++.||+ +|+||++.|-||..|.+-+++--|...|.. + +.|||.+.+ .
T Consensus 560 A~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~-~--------g~nGwaig~~~~~~~~~~~d~~ 630 (778)
T cd04299 560 ARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGY-D--------GENGWAIGDGDEYEDDEYQDAE 630 (778)
T ss_pred HHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCcccccc-C--------CCCceEeCCCccccChhhcchh
Confidence 9999999999999999 899999999999999999999888888887 4 689999987 6
Q ss_pred CHHHHHHHHHH-HHHhccCC-----HHHHHHHHHHHHHh---cCCHHHHHHHHHH-HHHH
Q 043397 543 DEGSLNWALDR-AFRHFIDK-----PEEWNRIVQKIMEN---DNSWNNAAGKYME-IYNS 592 (596)
Q Consensus 543 d~~~la~~i~~-ll~~~~~~-----~~~~~~~~~~~~~~---~fs~~~~~~~~~~-iy~~ 592 (596)
|+++|.+.|++ ++-+|.+. |..|.+|.++++.. +|||++++++|.+ +|..
T Consensus 631 da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y~p 690 (778)
T cd04299 631 EAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERFYLP 690 (778)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhHHH
Confidence 78889999965 55477653 78999999999996 9999999999996 5544
No 58
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=100.00 E-value=3.3e-32 Score=282.12 Aligned_cols=352 Identities=20% Similarity=0.236 Sum_probs=254.0
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCC
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSS 189 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (596)
||++++.. .||.+.+...++++|.+.||+|+++++...... .....|
T Consensus 1 kIl~i~~~------~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~---------------------------~~~~~~ 47 (359)
T cd03808 1 KILHIVTV------DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE---------------------------ELEALG 47 (359)
T ss_pred CeeEEEec------chhHHHHHHHHHHHHHhcCCeeEEEecCCCccc---------------------------ccccCC
Confidence 68999865 388899999999999999999999986533221 001245
Q ss_pred eEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEE
Q 043397 190 IPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVL 269 (596)
Q Consensus 190 v~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~ 269 (596)
+.++.++....... ..........+.+.++ ..+||+||+|+........+.... ....++++
T Consensus 48 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~--~~~~dvv~~~~~~~~~~~~~~~~~-----~~~~~~i~ 109 (359)
T cd03808 48 VKVIPIPLDRRGIN-----------PFKDLKALLRLYRLLR--KERPDIVHTHTPKPGILGRLAARL-----AGVPKVIY 109 (359)
T ss_pred ceEEeccccccccC-----------hHhHHHHHHHHHHHHH--hcCCCEEEEccccchhHHHHHHHH-----cCCCCEEE
Confidence 56655542110000 0001112222333333 368999999976655554444322 34678888
Q ss_pred EEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhh
Q 043397 270 TIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLI 349 (596)
Q Consensus 270 tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~ 349 (596)
+.|+..+...... .....+ ..+.+..+..+|.++++|+...+.+...+. .
T Consensus 110 ~~~~~~~~~~~~~-------~~~~~~------------------~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~-----~ 159 (359)
T cd03808 110 TVHGLGFVFTSGG-------LKRRLY------------------LLLERLALRFTDKVIFQNEDDRDLALKLGI-----I 159 (359)
T ss_pred EecCcchhhccch-------hHHHHH------------------HHHHHHHHhhccEEEEcCHHHHHHHHHhcC-----C
Confidence 8887654211100 001111 122344556789999999999988765432 1
Q ss_pred ccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHH
Q 043397 350 THRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIK 429 (596)
Q Consensus 350 ~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~ 429 (596)
.+..++.+++||+|...+.+.... . ..+.+.++|+|++.+.||++.++++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~--~~~~~~i~~~G~~~~~k~~~~li~~~~ 211 (359)
T cd03808 160 KKKKTVLIPGSGVDLDRFSPSPEP--------------------------I--PEDDPVFLFVARLLKDKGIDELLEAAR 211 (359)
T ss_pred CcCceEEecCCCCChhhcCccccc--------------------------c--CCCCcEEEEEeccccccCHHHHHHHHH
Confidence 124578888999998766543110 0 156789999999999999999999999
Q ss_pred HHHH--cCCEEEEEecCCCCcchHHHHHH-HHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhc
Q 043397 430 RAEE--LGGQMILLGNSPVHWVQKDFEDL-ANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRY 506 (596)
Q Consensus 430 ~l~~--~~~~lvIvG~~~~g~~~~~l~~~-~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~ 506 (596)
.+.+ ++++|+|+|. +......... +.+.+..++|.|.|.. +++..+|++||++++||..|++|++++|||++
T Consensus 212 ~l~~~~~~~~l~i~G~---~~~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~ 286 (359)
T cd03808 212 ILKAKGPNVRLLLVGD---GDEENPAAILEIEKLGLEGRVEFLGFR--DDVPELLAAADVFVLPSYREGLPRVLLEAMAM 286 (359)
T ss_pred HHHhcCCCeEEEEEcC---CCcchhhHHHHHHhcCCcceEEEeecc--ccHHHHHHhccEEEecCcccCcchHHHHHHHc
Confidence 9875 6799999999 5544444433 5666777889999994 45999999999999999999999999999999
Q ss_pred CCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH---hcCCHHHHH
Q 043397 507 GAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME---NDNSWNNAA 583 (596)
Q Consensus 507 G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~---~~fs~~~~~ 583 (596)
|+|+|+++.++..+++.+ +.+|+++++.|+++++++|.+++. +++.+.++++++.+ ++|||+.++
T Consensus 287 G~Pvi~s~~~~~~~~i~~--------~~~g~~~~~~~~~~~~~~i~~l~~----~~~~~~~~~~~~~~~~~~~~s~~~~~ 354 (359)
T cd03808 287 GRPVIATDVPGCREAVID--------GVNGFLVPPGDAEALADAIERLIE----DPELRARMGQAARKRAEEEFDEEIVV 354 (359)
T ss_pred CCCEEEecCCCchhhhhc--------CcceEEECCCCHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999999999987 689999999999999999999998 88988888866544 799999999
Q ss_pred HHHH
Q 043397 584 GKYM 587 (596)
Q Consensus 584 ~~~~ 587 (596)
++|+
T Consensus 355 ~~~~ 358 (359)
T cd03808 355 KKLL 358 (359)
T ss_pred HHhh
Confidence 9886
No 59
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=2.2e-32 Score=290.66 Aligned_cols=378 Identities=11% Similarity=0.045 Sum_probs=240.8
Q ss_pred EEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCCe
Q 043397 111 IIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSSI 190 (596)
Q Consensus 111 Il~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 190 (596)
||++|+.+ |++..+|....+.+++++|++. |+|+++|-............+... ...+
T Consensus 1 iL~~~~~~-P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~~~~~~~~~~~l~~~--------------------~~~~ 58 (397)
T TIGR03087 1 ILYLVHRI-PYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVDDPEDWQYAAALRPL--------------------CEEV 58 (397)
T ss_pred CeeecCCC-CCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCCCcccHHHHHHHHHH--------------------hhee
Confidence 68888776 4445556699999999999775 999999954322211111111100 0111
Q ss_pred EEEEEcCCcc-------ccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCC
Q 043397 191 PVIFIEPSNQ-------FFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLK 263 (596)
Q Consensus 191 ~v~~~~~~~~-------~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~ 263 (596)
.++.+.+... ++.+ ..+... ......+.+.+.++++ ..++|+||+++...+... .. ...
T Consensus 59 ~~~~~~~~~~~~~~~~~l~~~-~p~~~~---~~~~~~~~~~l~~~~~--~~~~D~v~~~~~~~~~~~---~~-----~~~ 124 (397)
T TIGR03087 59 CVVPLDPRVARLRSLLGLLTG-EPLSLP---YYRSRRLARWVNALLA--AEPVDAIVVFSSAMAQYV---TP-----HVR 124 (397)
T ss_pred EEeecCcHHHHHHHHhhhcCC-CCCcch---hhCCHHHHHHHHHHHh--hCCCCEEEEeccccceec---cc-----ccc
Confidence 1111110000 0000 000000 0000113333333333 268999999864332111 10 135
Q ss_pred CCcEEEEEcCCCCCCcchhhhhhhcCCCc-hhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcc
Q 043397 264 KPRIVLTIHNMEHYGECRQEQLSKCGLDG-SIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSG 342 (596)
Q Consensus 264 ~~pvv~tiH~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g 342 (596)
++|+|++.|+..+.. +.. ......... ..+....+ ....+++..++.+|.++++|+..++.+.+.+
T Consensus 125 ~~p~i~~~~d~~~~~-~~~-~~~~~~~~~~~~~~~~~~-----------~~~~~e~~~~~~ad~vi~~S~~~~~~l~~~~ 191 (397)
T TIGR03087 125 GVPRIVDFVDVDSDK-WLQ-YARTKRWPLRWIYRREGR-----------LLLAYERAIAARFDAATFVSRAEAELFRRLA 191 (397)
T ss_pred CCCeEeehhhHHHHH-HHH-HHhccCcchhHHHHHHHH-----------HHHHHHHHHHhhCCeEEEcCHHHHHHHHHhC
Confidence 789999999865310 000 000001111 11110000 1123456677889999999999888865322
Q ss_pred hhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHH
Q 043397 343 WLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLH 422 (596)
Q Consensus 343 ~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~ 422 (596)
.....++.+||||+|.+.|.+..... . ... .+.++++|+||+.+.||++
T Consensus 192 ------~~~~~~v~vipngvd~~~f~~~~~~~---------------------~--~~~--~~~~~ilf~G~l~~~k~~~ 240 (397)
T TIGR03087 192 ------PEAAGRITAFPNGVDADFFSPDRDYP---------------------N--PYP--PGKRVLVFTGAMDYWPNID 240 (397)
T ss_pred ------CCCCCCeEEeecccchhhcCCCcccc---------------------C--CCC--CCCcEEEEEEecCCccCHH
Confidence 23356899999999998886542110 0 011 3567899999999999999
Q ss_pred HHHH----HHHHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCC-CCC
Q 043397 423 LITH----AIKRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSI-YEP 495 (596)
Q Consensus 423 ~ll~----A~~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~-~E~ 495 (596)
.+++ ++..+.+ ++++|+|+|+ |+. +.++ +++..++|+|+|.+++ +..+|++||++++||. .||
T Consensus 241 ~l~~~~~~~~~~l~~~~p~~~l~ivG~---g~~-~~~~----~l~~~~~V~~~G~v~~--~~~~~~~adv~v~Ps~~~eG 310 (397)
T TIGR03087 241 AVVWFAERVFPAVRARRPAAEFYIVGA---KPS-PAVR----ALAALPGVTVTGSVAD--VRPYLAHAAVAVAPLRIARG 310 (397)
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEECC---CCh-HHHH----HhccCCCeEEeeecCC--HHHHHHhCCEEEecccccCC
Confidence 9884 4445543 6899999998 654 2333 3344578999999985 8899999999999997 499
Q ss_pred CchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-
Q 043397 496 CGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME- 574 (596)
Q Consensus 496 ~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~- 574 (596)
+|++++|||+||+|||+++.++. .+... +++|+++. .|+++++++|.++++ |++.+++|++++.+
T Consensus 311 ~~~~~lEAma~G~PVV~t~~~~~-~i~~~--------~~~g~lv~-~~~~~la~ai~~ll~----~~~~~~~~~~~ar~~ 376 (397)
T TIGR03087 311 IQNKVLEAMAMAKPVVASPEAAE-GIDAL--------PGAELLVA-ADPADFAAAILALLA----NPAEREELGQAARRR 376 (397)
T ss_pred cccHHHHHHHcCCCEEecCcccc-ccccc--------CCcceEeC-CCHHHHHHHHHHHHc----CHHHHHHHHHHHHHH
Confidence 99999999999999999997542 22222 35799987 799999999999998 99999999876554
Q ss_pred --hcCCHHHHHHHHHHHHHH
Q 043397 575 --NDNSWNNAAGKYMEIYNS 592 (596)
Q Consensus 575 --~~fs~~~~~~~~~~iy~~ 592 (596)
++|||+.+++++.++|..
T Consensus 377 v~~~fsw~~~~~~~~~~l~~ 396 (397)
T TIGR03087 377 VLQHYHWPRNLARLDALLEQ 396 (397)
T ss_pred HHHhCCHHHHHHHHHHHhcC
Confidence 789999999999999863
No 60
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=100.00 E-value=2.6e-31 Score=274.37 Aligned_cols=341 Identities=21% Similarity=0.208 Sum_probs=243.8
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCC
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSS 189 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (596)
||++++..+. .||.++++..++++|.+.||+|++++............... ..
T Consensus 1 kIl~~~~~~~----~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~-----------------------~~ 53 (353)
T cd03811 1 KILFVIPSLG----GGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNV-----------------------KL 53 (353)
T ss_pred CeEEEeeccc----CCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccch-----------------------hh
Confidence 6899987773 59999999999999999999999999654332111100000 00
Q ss_pred eEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCC-ccchHHHHHHHHhhhccCCCCcEE
Q 043397 190 IPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEW-QIGALPLLYWDMYQSLSLKKPRIV 268 (596)
Q Consensus 190 v~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~-~~~~~~~~~~~~~~~~~~~~~pvv 268 (596)
........ .. . ....+...+..+++. .+||+||++.. .......+.. ..++|++
T Consensus 54 ~~~~~~~~--~~-~-------------~~~~~~~~~~~~~~~--~~~dii~~~~~~~~~~~~~~~~-------~~~~~~i 108 (353)
T cd03811 54 IPVRVLKL--KS-L-------------RDLLAILRLRRLLRK--EKPDVVISHLTTTPNVLALLAA-------RLGTKLI 108 (353)
T ss_pred hceeeeec--cc-c-------------cchhHHHHHHHHHHh--cCCCEEEEcCccchhHHHHHHh-------hcCCceE
Confidence 00000000 00 0 011233344444443 58999999976 2222222211 1278999
Q ss_pred EEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhh
Q 043397 269 LTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVL 348 (596)
Q Consensus 269 ~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~ 348 (596)
+++|+........... .....+..+..+|.++++|+..++.+... +
T Consensus 109 ~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~d~ii~~s~~~~~~~~~~------~ 154 (353)
T cd03811 109 VWEHNSLSLELKRKLR----------------------------LLLLIRKLYRRADKIVAVSEGVKEDLLKL------L 154 (353)
T ss_pred EEEcCcchhhhccchh----------------------------HHHHHHhhccccceEEEeccchhhhHHHh------h
Confidence 9999887532111000 00123445677999999999999886543 2
Q ss_pred hccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHH
Q 043397 349 ITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAI 428 (596)
Q Consensus 349 ~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~ 428 (596)
..+..++.+||||+|...+.+.... .. .++.. .+.++++|+||+.+.||++.+++++
T Consensus 155 ~~~~~~~~vi~~~~~~~~~~~~~~~-------------------~~--~~~~~--~~~~~i~~~g~~~~~k~~~~~i~~~ 211 (353)
T cd03811 155 GIPPDKIEVIYNPIDIEEIRALAEE-------------------PL--ELGIP--PDGPVILAVGRLSPQKGFDTLIRAF 211 (353)
T ss_pred cCCccccEEecCCcChhhcCcccch-------------------hh--hcCCC--CCceEEEEEecchhhcChHHHHHHH
Confidence 3346789999999998776544211 00 12222 5678999999999999999999999
Q ss_pred HHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhc
Q 043397 429 KRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRY 506 (596)
Q Consensus 429 ~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~ 506 (596)
+.+.+ ++++|+|+|. ++..+.+++.+++++..++|.+.|..++ +..+|+.||++++||.+|++|++++|||++
T Consensus 212 ~~l~~~~~~~~l~i~G~---~~~~~~~~~~~~~~~~~~~v~~~g~~~~--~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~ 286 (353)
T cd03811 212 ALLRKEGPDARLVILGD---GPLREELEALAKELGLADRVHFLGFQSN--PYPYLKAADLFVLSSRYEGFPNVLLEAMAL 286 (353)
T ss_pred HHhhhcCCCceEEEEcC---CccHHHHHHHHHhcCCCccEEEecccCC--HHHHHHhCCEEEeCcccCCCCcHHHHHHHh
Confidence 99976 4899999999 8888889999999998889999999765 889999999999999999999999999999
Q ss_pred CCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 043397 507 GAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIM 573 (596)
Q Consensus 507 G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~ 573 (596)
|+|+|+++.||..|++.+ +.+|+++++.|++++++.+..+.... ++++.+.+++.++.
T Consensus 287 G~PvI~~~~~~~~e~i~~--------~~~g~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~ 344 (353)
T cd03811 287 GTPVVATDCPGPREILED--------GENGLLVPVGDEAALAAAALALLDLL-LDPELRERLAAAAR 344 (353)
T ss_pred CCCEEEcCCCChHHHhcC--------CCceEEECCCCHHHHHHHHHHHHhcc-CChHHHHHHHHHHH
Confidence 999999999999999998 78999999999999965555554433 27787777776433
No 61
>PLN02275 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.3e-30 Score=272.13 Aligned_cols=329 Identities=13% Similarity=0.006 Sum_probs=217.5
Q ss_pred cCHHHHHhHHHHHHHhcCC-eEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCCeEEEEEcCCccccC
Q 043397 125 GGLGDVVTGLARACLSRGH-TVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSSIPVIFIEPSNQFFK 203 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh-~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~~~~~ 203 (596)
+|.+..+..++..++++|| +|+|++........+.. ...|+.+++++. .....
T Consensus 15 ~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~-------------------------~~~~v~v~r~~~-~~~~~ 68 (371)
T PLN02275 15 FGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALL-------------------------NHPSIHIHLMVQ-PRLLQ 68 (371)
T ss_pred CCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHh-------------------------cCCcEEEEECCC-ccccc
Confidence 5568888999999999886 79999843221111110 135688888762 11110
Q ss_pred CCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccch---HHHHHHHHhhhccCCCCcEEEEEcCCCCCCcc
Q 043397 204 GKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGA---LPLLYWDMYQSLSLKKPRIVLTIHNMEHYGEC 280 (596)
Q Consensus 204 ~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~---~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~ 280 (596)
....+......+.....+...+...+.....+||+||+|+..... .+.++.. ..+.|+|+++|+.+.. ..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~------~~~~p~v~~~h~~~~~-~~ 141 (371)
T PLN02275 69 RLPRVLYALALLLKVAIQFLMLLWFLCVKIPRPDVFLVQNPPSVPTLAVVKLACW------LRRAKFVIDWHNFGYT-LL 141 (371)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHH------HhCCCEEEEcCCccHH-HH
Confidence 000000000001111111122222222224799999998755322 2222222 3578999999986421 00
Q ss_pred hhhhhhhcCCC-chhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEee
Q 043397 281 RQEQLSKCGLD-GSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGIL 359 (596)
Q Consensus 281 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~ 359 (596)
..+.. ...... -...+.+..++.+|.|+++|+.+++.+.+. ++. ++.+|+
T Consensus 142 ------~~~~~~~~~~~~--------------~~~~~e~~~~~~ad~ii~~S~~~~~~l~~~------~g~---~i~vi~ 192 (371)
T PLN02275 142 ------ALSLGRSHPLVR--------------LYRWYERHYGKMADGHLCVTKAMQHELDQN------WGI---RATVLY 192 (371)
T ss_pred ------hcccCCCCHHHH--------------HHHHHHHHHHhhCCEEEECCHHHHHHHHHh------cCC---CeEEEC
Confidence 00110 000100 011234455777999999999999987542 111 288999
Q ss_pred CCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHH-------
Q 043397 360 NGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAE------- 432 (596)
Q Consensus 360 nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~------- 432 (596)
||. .+.|.|.... ..+.. +...+++++||+.++||++.+++|+..+.
T Consensus 193 n~~-~~~f~~~~~~----------------------~~~~~---~~~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~ 246 (371)
T PLN02275 193 DQP-PEFFRPASLE----------------------IRLRP---NRPALVVSSTSWTPDEDFGILLEAAVMYDRRVAARL 246 (371)
T ss_pred CCC-HHHcCcCCch----------------------hcccC---CCcEEEEEeCceeccCCHHHHHHHHHHHHhhhhhcc
Confidence 995 3555543110 00100 23457889999999999999999998773
Q ss_pred ------------HcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEe-ccCHHHHHHHHHhCCEEEEcC--C-CCCC
Q 043397 433 ------------ELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILL-MYSEELSHMLYAAADIVLVPS--I-YEPC 496 (596)
Q Consensus 433 ------------~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g-~~~~~~l~~~~a~aDi~l~PS--~-~E~~ 496 (596)
.++++|+|+|+ |+..++++++++++++.+ +.|++ +++.+++..+|++||++++|+ . .|++
T Consensus 247 ~~~~~~~~~~~~~~~i~l~ivG~---G~~~~~l~~~~~~~~l~~-v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~ 322 (371)
T PLN02275 247 NESDSASGKQSLYPRLLFIITGK---GPQKAMYEEKISRLNLRH-VAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDL 322 (371)
T ss_pred ccccccccccccCCCeEEEEEeC---CCCHHHHHHHHHHcCCCc-eEEEcCCCCHHHHHHHHHhCCEEEEeccccccccc
Confidence 25799999999 999999999999999864 88875 689999999999999999864 2 4899
Q ss_pred chHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHH
Q 043397 497 GLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAF 555 (596)
Q Consensus 497 gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll 555 (596)
|++++||||||+|||+++.||.+|+|.+ +.+|++++ |+++|+++|.+++
T Consensus 323 p~~llEAmA~G~PVVa~~~gg~~eiv~~--------g~~G~lv~--~~~~la~~i~~l~ 371 (371)
T PLN02275 323 PMKVVDMFGCGLPVCAVSYSCIGELVKD--------GKNGLLFS--SSSELADQLLELL 371 (371)
T ss_pred cHHHHHHHHCCCCEEEecCCChHHHccC--------CCCeEEEC--CHHHHHHHHHHhC
Confidence 9999999999999999999999999998 78999997 7999999998764
No 62
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.98 E-value=1.6e-30 Score=280.54 Aligned_cols=279 Identities=12% Similarity=0.080 Sum_probs=208.4
Q ss_pred CCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcc
Q 043397 233 GVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPE 312 (596)
Q Consensus 233 ~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (596)
..++||+|++.......+. +.. ..++|+++++|+......... .....+..
T Consensus 209 ~~~~di~i~dr~~~~~~~~-~~~------~~~~~~v~~lH~~h~~~~~~~-------~~~~~~~~--------------- 259 (500)
T TIGR02918 209 LTKKDIIILDRSTGIGQAV-LEN------KGPAKLGVVVHAEHFSESATN-------ETYILWNN--------------- 259 (500)
T ss_pred CCCCCEEEEcCCcccchHH-Hhc------CCCceEEEEEChhhhcCccCc-------chhHHHHH---------------
Confidence 3689999997544322222 211 457899999997543111000 00000000
Q ss_pred cchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHH
Q 043397 313 RLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKY 392 (596)
Q Consensus 313 ~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~ 392 (596)
........++.+|.++++|+..++.+.+.. . .+.....++.+||||++...+.+..
T Consensus 260 ~y~~~~~~~~~~D~iI~~S~~~~~~l~~~~--~-~~~~~~~ki~viP~g~~~~~~~~~~--------------------- 315 (500)
T TIGR02918 260 YYEYQFSNADYIDFFITATDIQNQILKNQF--K-KYYNIEPRIYTIPVGSLDELQYPEQ--------------------- 315 (500)
T ss_pred HHHHHHhchhhCCEEEECCHHHHHHHHHHh--h-hhcCCCCcEEEEcCCCcccccCccc---------------------
Confidence 000111234568999999998888765320 0 1122357899999998754332210
Q ss_pred HHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEe
Q 043397 393 YIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILL 470 (596)
Q Consensus 393 ~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g 470 (596)
..+...|+++||+.+.||++.+++|+.++.+ ++++|+|+|+ |+..+.++++++++++.++|.|+|
T Consensus 316 ----------~r~~~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~---G~~~~~l~~~i~~~~l~~~V~f~G 382 (500)
T TIGR02918 316 ----------ERKPFSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGE---GGEKQKLQKIINENQAQDYIHLKG 382 (500)
T ss_pred ----------ccCCeEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEEC---chhHHHHHHHHHHcCCCCeEEEcC
Confidence 0344679999999999999999999999875 6899999999 888899999999999989999999
Q ss_pred ccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCC-CccccccccCCCCCCCccceEEEeCC----C--
Q 043397 471 MYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTG-GLADTVFDVDDPSNHEKANGFVFEGI----D-- 543 (596)
Q Consensus 471 ~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~g-g~~e~i~~~~~~~~~~~~~G~lv~~~----d-- 543 (596)
.. ++..+|+.||++++||..|+||++++||||||+|||+++++ |.+|+|.+ +.+|+++++. |
T Consensus 383 ~~---~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G~~eiI~~--------g~nG~lv~~~~~~~d~~ 451 (500)
T TIGR02918 383 HR---NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGLGMIGFDVNYGNPTFIED--------NKNGYLIPIDEEEDDED 451 (500)
T ss_pred CC---CHHHHHHhCCEEEEcCccccccHHHHHHHHhCCCEEEecCCCCCHHHccC--------CCCEEEEeCCccccchh
Confidence 76 36789999999999999999999999999999999999986 89999998 7899999842 3
Q ss_pred --HHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHH
Q 043397 544 --EGSLNWALDRAFRHFIDKPEEWNRIVQKIME--NDNSWNNAAGKYMEIYNSI 593 (596)
Q Consensus 544 --~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~iy~~l 593 (596)
+++|+++|.++++ + +.+.+|++++.+ ++|||+.++++|.++++++
T Consensus 452 ~~~~~la~~I~~ll~----~-~~~~~~~~~a~~~a~~fs~~~v~~~w~~ll~~~ 500 (500)
T TIGR02918 452 QIITALAEKIVEYFN----S-NDIDAFHEYSYQIAEGFLTANIIEKWKKLVREV 500 (500)
T ss_pred HHHHHHHHHHHHHhC----h-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 7889999999884 3 457888877665 7899999999999999864
No 63
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.98 E-value=1e-30 Score=277.87 Aligned_cols=373 Identities=14% Similarity=0.133 Sum_probs=235.2
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhc-CCeEEEEeccccchhhhhhcccceeeeEEeecCC-----ceEEEEE
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSR-GHTVDIMLPFYECIQKQEISDLALITTYNSYHDG-----NWVATNA 182 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~-Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 182 (596)
-+|.++|+...|| ..|.+.--.--|.+|++. |++|+++.|.-...++. ........|..|..- .|...+
T Consensus 323 r~~~ivTtAslPW--mTGtavnpL~rAayLa~~~~~~VtlviPWl~~~dq~--~vy~~~~~F~~p~eQe~~ir~wl~~r- 397 (794)
T PLN02501 323 RHVAIVTTASLPW--MTGTAVNPLFRAAYLAKSAKQNVTLLVPWLCKSDQE--LVYPNNLTFSSPEEQESYIRNWLEER- 397 (794)
T ss_pred CeEEEEEcccCcc--cccccccHHHHHHHhcccCCceEEEEEecCCccccc--cccCCCcccCCHHHHHHHHHHHHHHh-
Confidence 6899999999997 355454444456677777 79999999754321111 111100011111100 000000
Q ss_pred EeeeeCCeEEEEEcCCccccC-CCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCc-cchH--HHHHHHHhh
Q 043397 183 YHGVVSSIPVIFIEPSNQFFK-GKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQ-IGAL--PLLYWDMYQ 258 (596)
Q Consensus 183 ~~~~~~gv~v~~~~~~~~~~~-~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~-~~~~--~~~~~~~~~ 258 (596)
.+...+..+.+++. .+.. ..+++. ...+.+.+. .++|||||++++. .+.. +..+..
T Consensus 398 -~g~~~~~~i~fYpg--~~~~~~~SI~p------------~gdI~~~L~--~f~PDVVHLatP~~LGw~~~Glr~Ar--- 457 (794)
T PLN02501 398 -IGFKADFKISFYPG--KFSKERRSIIP------------AGDTSQFIP--SKDADIAILEEPEHLNWYHHGKRWTD--- 457 (794)
T ss_pred -cCCCCCceEEeecc--hhccCCccccc------------hHHHHHHhh--ccCCCEEEECCchhhccHHHHHHHHH---
Confidence 01112344444441 1111 111221 122333333 3799999999865 3544 332222
Q ss_pred hccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHH
Q 043397 259 SLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKET 338 (596)
Q Consensus 259 ~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~ 338 (596)
..+ |+|.++|+..... ... -+. ..+.....+.+ ..+++.+. ||.|+++|.... .+
T Consensus 458 ---Kl~-PVVasyHTny~eY-l~~-----y~~-g~L~~~llk~l-----------~~~v~r~h--cD~VIaPS~atq-~L 512 (794)
T PLN02501 458 ---KFN-HVVGVVHTNYLEY-IKR-----EKN-GALQAFFVKHI-----------NNWVTRAY--CHKVLRLSAATQ-DL 512 (794)
T ss_pred ---HcC-CeEEEEeCCcHHH-HhH-----hcc-hhHHHHHHHHH-----------HHHHHHhh--CCEEEcCCHHHH-Hh
Confidence 235 8999999876421 110 011 00111000000 01222222 899999996555 32
Q ss_pred hhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEeccccc
Q 043397 339 LCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQ 418 (596)
Q Consensus 339 ~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~ 418 (596)
...+....||||++.|.|... ...++.++.. ...+.++|+||+.++
T Consensus 513 -------------~~~vI~nVnGVDte~F~P~~r-------------------~~~~r~lgi~--~~~kgiLfVGRLa~E 558 (794)
T PLN02501 513 -------------PKSVICNVHGVNPKFLKIGEK-------------------VAEERELGQQ--AFSKGAYFLGKMVWA 558 (794)
T ss_pred -------------cccceeecccccccccCCcch-------------------hHHHHhcCCc--cccCceEEEEccccc
Confidence 122222237999999887621 1122455554 333458999999999
Q ss_pred CCHHHHHHHHHHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCC
Q 043397 419 KGLHLITHAIKRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPC 496 (596)
Q Consensus 419 KGi~~ll~A~~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~ 496 (596)
||++.|++|++.+.+ ++++|+|+|+ |+..+.++++++++++ +|.|+|..++ ...+|+.+|+||+||..|+|
T Consensus 559 KGld~LLeAla~L~~~~pnvrLvIVGD---GP~reeLe~la~eLgL--~V~FLG~~dd--~~~lyasaDVFVlPS~sEgF 631 (794)
T PLN02501 559 KGYRELIDLLAKHKNELDGFNLDVFGN---GEDAHEVQRAAKRLDL--NLNFLKGRDH--ADDSLHGYKVFINPSISDVL 631 (794)
T ss_pred CCHHHHHHHHHHHHhhCCCeEEEEEcC---CccHHHHHHHHHHcCC--EEEecCCCCC--HHHHHHhCCEEEECCCcccc
Confidence 999999999998865 5799999999 9999999999998887 4999998876 55899999999999999999
Q ss_pred chHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 043397 497 GLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIMEND 576 (596)
Q Consensus 497 gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~ 576 (596)
|++++||||||+|||+++.+|... +.+ +.+|+++ .|+++++++|.++++ ++.....+.+ ...
T Consensus 632 GlVlLEAMA~GlPVVATd~pG~e~-V~~--------g~nGll~--~D~EafAeAI~~LLs----d~~~rl~~~a---~~~ 693 (794)
T PLN02501 632 CTATAEALAMGKFVVCADHPSNEF-FRS--------FPNCLTY--KTSEDFVAKVKEALA----NEPQPLTPEQ---RYN 693 (794)
T ss_pred hHHHHHHHHcCCCEEEecCCCCce-Eee--------cCCeEec--CCHHHHHHHHHHHHh----CchhhhHHHH---Hhh
Confidence 999999999999999999998544 555 5678765 589999999999998 6554333322 238
Q ss_pred CCHHHHHHHHHHHH
Q 043397 577 NSWNNAAGKYMEIY 590 (596)
Q Consensus 577 fs~~~~~~~~~~iy 590 (596)
+||+.+++++++.-
T Consensus 694 ~SWeAaadrLle~~ 707 (794)
T PLN02501 694 LSWEAATQRFMEYS 707 (794)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999998754
No 64
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.98 E-value=1.6e-30 Score=271.74 Aligned_cols=204 Identities=21% Similarity=0.200 Sum_probs=172.8
Q ss_pred hhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHH
Q 043397 316 LLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQ 395 (596)
Q Consensus 316 ~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~ 395 (596)
+.+..++.+|.++++|+..++.+.+. + ..+..+|+||+|.+.+.+..
T Consensus 146 ~~~~~~~~~d~ii~~S~~~~~~~~~~------~---~~~~~vi~~~~d~~~~~~~~------------------------ 192 (351)
T cd03804 146 WDRRSAARVDYFIANSRFVARRIKKY------Y---GRDATVIYPPVDTDRFTPAE------------------------ 192 (351)
T ss_pred HHHHHhcCCCEEEECCHHHHHHHHHH------h---CCCcEEECCCCCHhhcCcCC------------------------
Confidence 34556788999999999999886532 1 34568999999987775431
Q ss_pred hhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHH
Q 043397 396 KGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEE 475 (596)
Q Consensus 396 ~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~ 475 (596)
...+.++|+||+.+.||++.+++|++++ + ++|+|+|+ |+..+.+++ +..++|+|+|+++++
T Consensus 193 --------~~~~~il~~G~~~~~K~~~~li~a~~~~--~-~~l~ivG~---g~~~~~l~~-----~~~~~V~~~g~~~~~ 253 (351)
T cd03804 193 --------EKEDYYLSVGRLVPYKRIDLAIEAFNKL--G-KRLVVIGD---GPELDRLRA-----KAGPNVTFLGRVSDE 253 (351)
T ss_pred --------CCCCEEEEEEcCccccChHHHHHHHHHC--C-CcEEEEEC---ChhHHHHHh-----hcCCCEEEecCCCHH
Confidence 2456789999999999999999999887 3 89999999 877666665 346789999999999
Q ss_pred HHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHH
Q 043397 476 LSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAF 555 (596)
Q Consensus 476 ~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll 555 (596)
++..+|++||++++||. |++|++++|||+||+|||+++.||..|++.+ +.+|+++++.|+++++++|.+++
T Consensus 254 ~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~--------~~~G~~~~~~~~~~la~~i~~l~ 324 (351)
T cd03804 254 ELRDLYARARAFLFPAE-EDFGIVPVEAMASGTPVIAYGKGGALETVID--------GVTGILFEEQTVESLAAAVERFE 324 (351)
T ss_pred HHHHHHHhCCEEEECCc-CCCCchHHHHHHcCCCEEEeCCCCCcceeeC--------CCCEEEeCCCCHHHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999999999999988 68999999999999999999999
Q ss_pred HhccCCH-HHHHHHHHHHHHhcCCHHHHHHHH
Q 043397 556 RHFIDKP-EEWNRIVQKIMENDNSWNNAAGKY 586 (596)
Q Consensus 556 ~~~~~~~-~~~~~~~~~~~~~~fs~~~~~~~~ 586 (596)
+ ++ ...+++++++ .+|+|++..+++
T Consensus 325 ~----~~~~~~~~~~~~~--~~~~~~~~~~~~ 350 (351)
T cd03804 325 K----NEDFDPQAIRAHA--ERFSESRFREKI 350 (351)
T ss_pred h----CcccCHHHHHHHH--HhcCHHHHHHHh
Confidence 8 66 4455555554 369999998875
No 65
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.98 E-value=4.4e-30 Score=273.20 Aligned_cols=220 Identities=16% Similarity=0.132 Sum_probs=188.8
Q ss_pred hchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHh
Q 043397 317 LKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQK 396 (596)
Q Consensus 317 ~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~ 396 (596)
.+..++.+|.|+++|+..++.+.. .++...+++.+++||++...+.+...
T Consensus 177 ~~~~~~~~d~ii~~S~~~~~~l~~------~~~~~~~ki~vi~~gv~~~~~~~~~~------------------------ 226 (407)
T cd04946 177 RRYLLSSLDAVFPCSEQGRNYLQK------RYPAYKEKIKVSYLGVSDPGIISKPS------------------------ 226 (407)
T ss_pred HHHHHhcCCEEEECCHHHHHHHHH------HCCCccccEEEEECCcccccccCCCC------------------------
Confidence 344467799999999998888543 34455678999999999765432200
Q ss_pred hcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHHc----CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEecc
Q 043397 397 GLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEEL----GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMY 472 (596)
Q Consensus 397 ~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~----~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~ 472 (596)
..+.+.|+++||+.+.||++.+++|+.++.+. +++++++|+ |+..+.+++++++++..++|.|+|++
T Consensus 227 ------~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~---g~~~~~l~~~~~~~~~~~~V~f~G~v 297 (407)
T cd04946 227 ------KDDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGG---GPLEDTLKELAESKPENISVNFTGEL 297 (407)
T ss_pred ------CCCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeC---chHHHHHHHHHHhcCCCceEEEecCC
Confidence 14567899999999999999999999999763 457788999 88899999999888888899999999
Q ss_pred CHHHHHHHHHh--CCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCC-CHHHHHH
Q 043397 473 SEELSHMLYAA--ADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGI-DEGSLNW 549 (596)
Q Consensus 473 ~~~~l~~~~a~--aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~-d~~~la~ 549 (596)
+++++..+|+. +|++++||..|++|++++|||++|+|||++++||++|++.+ +.+|+++++. |++++++
T Consensus 298 ~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg~~e~i~~--------~~~G~l~~~~~~~~~la~ 369 (407)
T cd04946 298 SNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGGTPEIVDN--------GGNGLLLSKDPTPNELVS 369 (407)
T ss_pred ChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCCcHHHhcC--------CCcEEEeCCCCCHHHHHH
Confidence 99999999975 78999999999999999999999999999999999999998 6799999864 7999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHH---hcCCHHHHHHHHH
Q 043397 550 ALDRAFRHFIDKPEEWNRIVQKIME---NDNSWNNAAGKYM 587 (596)
Q Consensus 550 ~i~~ll~~~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~ 587 (596)
+|.++++ |++.+.+|++++.+ ++|||+...++++
T Consensus 370 ~I~~ll~----~~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 370 SLSKFID----NEEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred HHHHHHh----CHHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 9999998 99999999977665 8999999998875
No 66
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.97 E-value=5.8e-30 Score=270.11 Aligned_cols=438 Identities=16% Similarity=0.159 Sum_probs=256.5
Q ss_pred EeecccccccccCHHHHHhHHHHHHHh-cCCeEEEEeccccchhhhhhcccceee-eE-----EeecCCceEEEEEEeee
Q 043397 114 ITAEMAPIAKVGGLGDVVTGLARACLS-RGHTVDIMLPFYECIQKQEISDLALIT-TY-----NSYHDGNWVATNAYHGV 186 (596)
Q Consensus 114 is~~~~P~~~~GG~~~~~~~La~aL~~-~Gh~V~vi~p~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~ 186 (596)
++++-.. ++||+-+++..-|..+.+ .|-+..++.|..+.....+.+...... .+ .....+ +.+.+-+..
T Consensus 7 ~swEV~N--KVGGIyTVi~tka~~~~~~~~d~y~~iGP~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~g--~~v~~GrW~ 82 (590)
T cd03793 7 VAWEVAN--KVGGIYTVIKSKAPVTVEEWGDRYCLIGPYNEAKARTEVEILEPPNPALRQALDRMRSRG--IKVHFGRWL 82 (590)
T ss_pred Eeehhhc--cCCCeeeeeecCcHHHHHHhCCeEEEECCCCccccCCccccCCCCchHHHHHHHHHHhCC--CeEEEeEEE
Confidence 4556555 899999999998888876 488999999876532222222211100 00 001112 233333445
Q ss_pred eCCeEEEEEcCCcccc-CCCc--------------ccCCChhhHHHHHHHHHHHHH-HHHh-hCCCCcEEEEcCCccchH
Q 043397 187 VSSIPVIFIEPSNQFF-KGKN--------------VYGGSYNELEAYLFFSRACLE-WMQV-TGVQPDIIHVHEWQIGAL 249 (596)
Q Consensus 187 ~~gv~v~~~~~~~~~~-~~~~--------------~y~~~~~~~~~~~~f~~~~~~-~l~~-~~~~pDVIh~~~~~~~~~ 249 (596)
+.|-|.+.+-.-...+ .... -...++++..-+......+.+ +... ...++||+|+|+|+++..
T Consensus 83 i~G~P~viL~D~~~~~~~~~~~~~~lW~~~~i~s~~~~~d~nea~~fgy~~~~~i~~~~~~~~~~~~dViH~HeWm~g~a 162 (590)
T cd03793 83 IEGYPKVVLFDIGSAAWKLDEWKGELWELCGIGSPEGDRETNDAIIFGFLVAWFLGEFAEQFDDEPAVVAHFHEWQAGVG 162 (590)
T ss_pred cCCCCeEEEEeCchhhhhHHHHHHHHHHHcCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCCCeEEEEcchhHhHH
Confidence 6777765443211111 1111 111123343333332222222 2222 235799999999999988
Q ss_pred HHHHHHHhhhccCCCCcEEEEEcCCCCCCcc-hhhhhhhcCCCchhhhhhhhh-----ccccccCCCcccchhhchhccc
Q 043397 250 PLLYWDMYQSLSLKKPRIVLTIHNMEHYGEC-RQEQLSKCGLDGSIYASVEKA-----IDDRTIGHNPERLSLLKGGIVY 323 (596)
Q Consensus 250 ~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 323 (596)
...++.. ..++|+|+|+|.... |.. .. |. ..++..+... ..++.+ ..+.++++.+...
T Consensus 163 ~~~lK~~-----~~~VptVfTtHAT~~-GR~l~~------g~-~~~y~~l~~~~~d~eA~~~~I---~~r~~iE~~aa~~ 226 (590)
T cd03793 163 LPLLRKR-----KVDVSTIFTTHATLL-GRYLCA------GN-VDFYNNLDYFDVDKEAGKRGI---YHRYCIERAAAHC 226 (590)
T ss_pred HHHHHHh-----CCCCCEEEEeccccc-cccccc------CC-cccchhhhhcchhhhhhcccc---hHHHHHHHHHHhh
Confidence 8877643 468899999997664 221 01 11 1222221111 011111 2445678889999
Q ss_pred cCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhh----HHHHHhhcC
Q 043397 324 SNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKIC----KYYIQKGLG 399 (596)
Q Consensus 324 ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~----k~~~~~~l~ 399 (596)
||.++|||+.+++|+ ..+|+.++++ |||||+|.+.|.+..+. .......|... +..++.+++
T Consensus 227 Ad~fttVS~it~~E~------~~Ll~~~pd~--ViPNGid~~~f~~~~e~------~~~~~~~k~ki~~f~~~~~~~~~~ 292 (590)
T cd03793 227 AHVFTTVSEITAYEA------EHLLKRKPDV--VLPNGLNVKKFSALHEF------QNLHAQSKEKINEFVRGHFYGHYD 292 (590)
T ss_pred CCEEEECChHHHHHH------HHHhCCCCCE--EeCCCcchhhcccchhh------hhhhHHhhhhhhHHHHHHHhhhcC
Confidence 999999999999995 4456777766 99999999998765321 00000111111 222455567
Q ss_pred CCCCCCccEEEE-Eecccc-cCCHHHHHHHHHHHHH------cCC---EEEEE-ecCC-------CC-cchHHH------
Q 043397 400 LKSEGTVPLVVC-ITRLVA-QKGLHLITHAIKRAEE------LGG---QMILL-GNSP-------VH-WVQKDF------ 453 (596)
Q Consensus 400 l~~~~~~~~il~-iGrl~~-~KGi~~ll~A~~~l~~------~~~---~lvIv-G~~~-------~g-~~~~~l------ 453 (596)
++ +++++++| +||++. +||+|.+|+|+.++.. .+. -|+|+ +.++ .| ...+++
T Consensus 293 ~~--~d~tli~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~ 370 (590)
T cd03793 293 FD--LDKTLYFFTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNS 370 (590)
T ss_pred CC--CCCeEEEEEeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHH
Confidence 64 67788877 799998 9999999999999865 122 34443 2211 00 101111
Q ss_pred -------------------------------------------------------------HHHHHHcCC----CCc--E
Q 043397 454 -------------------------------------------------------------EDLANLHNK----GTS--T 466 (596)
Q Consensus 454 -------------------------------------------------------------~~~~~~~~~----~~~--V 466 (596)
....++.++ .++ |
T Consensus 371 i~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkv 450 (590)
T cd03793 371 VKEKIGKRLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKV 450 (590)
T ss_pred HHHHhhhhhhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEE
Confidence 111111112 222 5
Q ss_pred EEEe-ccC------HHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEE
Q 043397 467 RILL-MYS------EELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVF 539 (596)
Q Consensus 467 ~~~g-~~~------~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv 539 (596)
+|+. +++ .....++|++||++|+||.+||||++++||||||+|+|+|+.+|+.+.+.+.-. ..+..|+.+
T Consensus 451 if~P~~L~~~~~~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~---~~~~~gi~V 527 (590)
T cd03793 451 VFHPEFLSSTNPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIE---DPESYGIYI 527 (590)
T ss_pred EEcccccCCCCCcCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhc---cCCCceEEE
Confidence 5553 222 334678899999999999999999999999999999999999999544432100 001357777
Q ss_pred eC-------CCHHHHHHHHHHHHHhccCCHHHHHHHHHHH----HHhcCCHHHHHHHHHHHHHHHhc
Q 043397 540 EG-------IDEGSLNWALDRAFRHFIDKPEEWNRIVQKI----MENDNSWNNAAGKYMEIYNSIRV 595 (596)
Q Consensus 540 ~~-------~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~----~~~~fs~~~~~~~~~~iy~~l~~ 595 (596)
.+ .+.++|+++|.++++ . .+++.+.++. ..+.|+|++.++.|.+.|+..+.
T Consensus 528 ~~r~~~~~~e~v~~La~~m~~~~~----~-~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 528 VDRRFKSPDESVQQLTQYMYEFCQ----L-SRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred ecCCccchHHHHHHHHHHHHHHhC----C-cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 63 345666666666664 3 3444444332 22689999999999999997764
No 67
>PHA01630 putative group 1 glycosyl transferase
Probab=99.97 E-value=2e-29 Score=259.01 Aligned_cols=215 Identities=11% Similarity=0.134 Sum_probs=165.2
Q ss_pred ccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCC
Q 043397 321 IVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGL 400 (596)
Q Consensus 321 ~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l 400 (596)
.+.+|.|+++|+..++.+...|. ...+++.+||||+|.+.|.+....
T Consensus 92 ~~~ad~ii~~S~~~~~~l~~~g~------~~~~~i~vIpNGVd~~~f~~~~~~--------------------------- 138 (331)
T PHA01630 92 NQPVDEIVVPSQWSKNAFYTSGL------KIPQPIYVIPHNLNPRMFEYKPKE--------------------------- 138 (331)
T ss_pred hccCCEEEECCHHHHHHHHHcCC------CCCCCEEEECCCCCHHHcCCCccc---------------------------
Confidence 35599999999999998765441 114689999999998877654110
Q ss_pred CCCCCccEEEEEecccccCCHHHHHHHHHHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHH
Q 043397 401 KSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSH 478 (596)
Q Consensus 401 ~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~ 478 (596)
.....+++++|++.++||++.+++|++++.+ ++++|+|+|+ +.....+. ++. .+.+.++.+++.
T Consensus 139 --~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~---~~~~~~l~------~~~---~~~~~v~~~~l~ 204 (331)
T PHA01630 139 --KPHPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSS---NMLDPRLF------GLN---GVKTPLPDDDIY 204 (331)
T ss_pred --cCCCEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeC---cccchhhc------ccc---ceeccCCHHHHH
Confidence 0234567788899999999999999999876 5789999997 54332221 221 135678999999
Q ss_pred HHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeC-----------------
Q 043397 479 MLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEG----------------- 541 (596)
Q Consensus 479 ~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~----------------- 541 (596)
.+|+.||++++||..|+||++++||||||+|||+|+.||++|++.+ +.||+++++
T Consensus 205 ~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~--------~~ng~lv~~~~~~~~~~~~~~~~G~~ 276 (331)
T PHA01630 205 SLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLS--------NLDVYWIKSGRKPKLWYTNPIHVGYF 276 (331)
T ss_pred HHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccC--------CCceEEeeecccccccccCCcccccc
Confidence 9999999999999999999999999999999999999999999988 566666542
Q ss_pred --CCHHHHHHHHHHHHHhccCC-HHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHH
Q 043397 542 --IDEGSLNWALDRAFRHFIDK-PEEWNRIVQKI--MENDNSWNNAAGKYMEIYNS 592 (596)
Q Consensus 542 --~d~~~la~~i~~ll~~~~~~-~~~~~~~~~~~--~~~~fs~~~~~~~~~~iy~~ 592 (596)
.|.+++++++.+++... + ++.++.+..++ ..++|||++++++|+++|++
T Consensus 277 v~~~~~~~~~~ii~~l~~~--~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 277 LDPDIEDAYQKLLEALANW--TPEKKKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred cCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 27788888888888721 1 33333333332 34899999999999999975
No 68
>PHA01633 putative glycosyl transferase group 1
Probab=99.97 E-value=1.6e-28 Score=249.27 Aligned_cols=227 Identities=14% Similarity=0.122 Sum_probs=170.0
Q ss_pred ccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCC
Q 043397 321 IVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGL 400 (596)
Q Consensus 321 ~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l 400 (596)
+...+.++++|+..++.+.+.|. + ..+ +|+||+|++.|.|..+ ....++++++.
T Consensus 90 m~~~~~vIavS~~t~~~L~~~G~-------~-~~i-~I~~GVD~~~f~p~~~-----------------~~~~~r~~~~~ 143 (335)
T PHA01633 90 LLQDVKFIPNSKFSAENLQEVGL-------Q-VDL-PVFHGINFKIVENAEK-----------------LVPQLKQKLDK 143 (335)
T ss_pred HhcCCEEEeCCHHHHHHHHHhCC-------C-Cce-eeeCCCChhhcCccch-----------------hhHHHHHHhCc
Confidence 33467899999999999876652 2 223 5789999998876521 11234555554
Q ss_pred CCCCCccEEEEEecccccCCHHHHHHHHHHHHH--c----CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEe---c
Q 043397 401 KSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--L----GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILL---M 471 (596)
Q Consensus 401 ~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~----~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g---~ 471 (596)
.. ++.++++++||+.++||++.+++|++++.+ + +++++++|. + . .+++++.++|+|.| .
T Consensus 144 ~~-~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~---~----~----~~~l~l~~~V~f~g~~G~ 211 (335)
T PHA01633 144 DF-PDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISH---K----Q----FTQLEVPANVHFVAEFGH 211 (335)
T ss_pred CC-CCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcH---H----H----HHHcCCCCcEEEEecCCC
Confidence 21 466789999999999999999999999875 2 357788875 2 1 23456677899995 5
Q ss_pred cCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCC-----C----C-CCccceEEEeC
Q 043397 472 YSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDP-----S----N-HEKANGFVFEG 541 (596)
Q Consensus 472 ~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~-----~----~-~~~~~G~lv~~ 541 (596)
++.+++..+|++||++|+||.+|+||++++|||+||+|||++++||++|++.+.... . + .+.++|++++.
T Consensus 212 ~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~ 291 (335)
T PHA01633 212 NSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHK 291 (335)
T ss_pred CCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCceeeecC
Confidence 578999999999999999999999999999999999999999999999976531000 0 0 12457889999
Q ss_pred CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043397 542 IDEGSLNWALDRAFRHFIDKPEEWNRIVQKIMENDNSWNNAAGKYME 588 (596)
Q Consensus 542 ~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~ 588 (596)
.|+++|+++|.++++.. +++++.. ..+...+.|+|+++.++|++
T Consensus 292 ~d~~~la~ai~~~~~~~--~~~~~~~-~~~~~a~~f~~~~~~~~~~~ 335 (335)
T PHA01633 292 FQIEDMANAIILAFELQ--DREERSM-KLKELAKKYDIRNLYTRFLE 335 (335)
T ss_pred CCHHHHHHHHHHHHhcc--ChhhhhH-HHHHHHHhcCHHHHHHHhhC
Confidence 99999999999998753 4444322 22233368999999999864
No 69
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.96 E-value=1.9e-28 Score=258.04 Aligned_cols=213 Identities=15% Similarity=0.164 Sum_probs=183.0
Q ss_pred ccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCC
Q 043397 321 IVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGL 400 (596)
Q Consensus 321 ~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l 400 (596)
+..+|.++++|+..++.+... +. ...++.+||||++...+.+...
T Consensus 155 ~~~~d~ii~~s~~~~~~l~~~------~~-~~~~v~~ip~g~~~~~~~~~~~---------------------------- 199 (372)
T cd04949 155 LDKVDGVIVATEQQKQDLQKQ------FG-NYNPIYTIPVGSIDPLKLPAQF---------------------------- 199 (372)
T ss_pred hhhCCEEEEccHHHHHHHHHH------hC-CCCceEEEcccccChhhcccch----------------------------
Confidence 456899999999888886532 22 2345899999999776544310
Q ss_pred CCCCCccEEEEEecccccCCHHHHHHHHHHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHH
Q 043397 401 KSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSH 478 (596)
Q Consensus 401 ~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~ 478 (596)
.......++++||+.+.||++.+++|+.++.+ ++++|+|+|. |.....++.+++++++.++|.|.|..++ +.
T Consensus 200 -~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~---g~~~~~~~~~~~~~~~~~~v~~~g~~~~--~~ 273 (372)
T cd04949 200 -KQRKPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGY---GDEEEKLKELIEELGLEDYVFLKGYTRD--LD 273 (372)
T ss_pred -hhcCCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEe---CchHHHHHHHHHHcCCcceEEEcCCCCC--HH
Confidence 01456789999999999999999999999865 6899999999 8888888888889998889999996544 99
Q ss_pred HHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCC-CccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 479 MLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTG-GLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 479 ~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~g-g~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
.+|+.||++++||..|+||++++|||++|+|+|+++.+ |..+++.+ +.+|+++++.|+++|+++|.++++
T Consensus 274 ~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v~~--------~~~G~lv~~~d~~~la~~i~~ll~- 344 (372)
T cd04949 274 EVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYGPSEIIED--------GENGYLVPKGDIEALAEAIIELLN- 344 (372)
T ss_pred HHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCCcHHHccc--------CCCceEeCCCcHHHHHHHHHHHHc-
Confidence 99999999999999999999999999999999999988 89999988 789999999999999999999998
Q ss_pred ccCCHHHHHHHHHHHHH--hcCCHHHHHHHH
Q 043397 558 FIDKPEEWNRIVQKIME--NDNSWNNAAGKY 586 (596)
Q Consensus 558 ~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~ 586 (596)
+++.+.++++++.+ ++|||++++++|
T Consensus 345 ---~~~~~~~~~~~a~~~~~~~s~~~~~~~w 372 (372)
T cd04949 345 ---DPKLLQKFSEAAYENAERYSEENVWEKW 372 (372)
T ss_pred ---CHHHHHHHHHHHHHHHHHhhHHHHHhcC
Confidence 99999999977765 799999998874
No 70
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.96 E-value=1.9e-27 Score=253.61 Aligned_cols=314 Identities=18% Similarity=0.124 Sum_probs=223.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCc
Q 043397 213 NELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDG 292 (596)
Q Consensus 213 ~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~ 292 (596)
..+..|....+...+.+...-..-|+|++|+++..++|.+++.. .+..++.+.+|...|... .+..+..
T Consensus 105 ~~w~~Y~~vN~~fA~~i~~~~~~~d~vwvhDYhl~l~p~~lr~~-----~~~~~igfFlHipfP~~e----~f~~lp~-- 173 (456)
T TIGR02400 105 KAWEAYRRVNRLFAEALAPLLQPGDIVWVHDYHLMLLPAMLREL-----GVQNKIGFFLHIPFPSSE----IYRTLPW-- 173 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCEEEEecchhhHHHHHHHhh-----CCCCeEEEEEeCCCCChH----HHhhCCc--
Confidence 34555555555555444443345689999999999999998765 577899999997765222 1111111
Q ss_pred hhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhh-----------ccCCcEEEeeCC
Q 043397 293 SIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLI-----------THRDKYFGILNG 361 (596)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~-----------~~~~ki~vI~nG 361 (596)
..-+-.++..+|.|.+.++.+++.++... ...++ ....++.++|||
T Consensus 174 ---------------------r~~il~gll~~dligF~t~~~~~~Fl~~~--~~~l~~~~~~~~~~~~g~~~~v~viP~G 230 (456)
T TIGR02400 174 ---------------------RRELLEGLLAYDLVGFQTYDDARNFLSAV--SRELGLETLPNGVESGGRTVRVGAFPIG 230 (456)
T ss_pred ---------------------HHHHHHHHhcCCEEEECCHHHHHHHHHHH--HHHhCCcccCCceEECCcEEEEEEecCc
Confidence 11133456679999999999999987431 22221 245678999999
Q ss_pred CCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHH--cC----
Q 043397 362 IDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--LG---- 435 (596)
Q Consensus 362 id~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~~---- 435 (596)
||++.|.+.... . ........+++++ .++++|+++||+++.||++.+++|++++.+ ++
T Consensus 231 ID~~~f~~~~~~----------~-~~~~~~~~lr~~~-----~~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~ 294 (456)
T TIGR02400 231 IDVDRFAEQAKK----------P-SVQKRIAELRESL-----KGRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGK 294 (456)
T ss_pred CCHHHHHHHhcC----------h-hHHHHHHHHHHHc-----CCCeEEEEccccccccCHHHHHHHHHHHHHhCccccCc
Confidence 999988654211 0 0011122355554 357899999999999999999999999865 33
Q ss_pred CEEEEEecC--CCCcchHHHHHHHHHc--------CCCC--cEEEE-eccCHHHHHHHHHhCCEEEEcCCCCCCchHHHH
Q 043397 436 GQMILLGNS--PVHWVQKDFEDLANLH--------NKGT--STRIL-LMYSEELSHMLYAAADIVLVPSIYEPCGLAQMI 502 (596)
Q Consensus 436 ~~lvIvG~~--~~g~~~~~l~~~~~~~--------~~~~--~V~~~-g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lE 502 (596)
+.|+++|.. ++++..+.+++.++++ +..+ .++++ +.++.+++..+|++||++++||..||||++++|
T Consensus 295 v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lE 374 (456)
T TIGR02400 295 VVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKE 374 (456)
T ss_pred eEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHH
Confidence 567777642 2345555565555543 1111 14444 689999999999999999999999999999999
Q ss_pred HHhcCCc----eEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--hc
Q 043397 503 GMRYGAV----PVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME--ND 576 (596)
Q Consensus 503 Ama~G~p----vI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~--~~ 576 (596)
|||||+| +|+|+.+|..+.+. +|++++|.|+++++++|.+++++ ++++++++.++..+ .+
T Consensus 375 amA~g~P~~g~vVlS~~~G~~~~l~-----------~gllVnP~d~~~lA~aI~~aL~~---~~~er~~r~~~~~~~v~~ 440 (456)
T TIGR02400 375 YVAAQDPKDGVLILSEFAGAAQELN-----------GALLVNPYDIDGMADAIARALTM---PLEEREERHRAMMDKLRK 440 (456)
T ss_pred HHHhcCCCCceEEEeCCCCChHHhC-----------CcEEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHhh
Confidence 9999999 99999999888772 69999999999999999999984 44555554443333 57
Q ss_pred CCHHHHHHHHHHHH
Q 043397 577 NSWNNAAGKYMEIY 590 (596)
Q Consensus 577 fs~~~~~~~~~~iy 590 (596)
||+...++++++-.
T Consensus 441 ~~~~~W~~~~l~~l 454 (456)
T TIGR02400 441 NDVQRWREDFLSDL 454 (456)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999988643
No 71
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.96 E-value=7.3e-28 Score=258.86 Aligned_cols=312 Identities=19% Similarity=0.165 Sum_probs=218.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCc
Q 043397 213 NELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDG 292 (596)
Q Consensus 213 ~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~ 292 (596)
..++.|..+.+...+.+...-...|+||+|+++..++|..+... .++.|+++.+|...|.... +....
T Consensus 109 ~~w~~Y~~vN~~fa~~i~~~~~~~d~iwihDyhl~llp~~lr~~-----~~~~~i~~f~HipfP~~e~----~~~lp--- 176 (460)
T cd03788 109 EDWEAYVRVNRKFADAIAEVLRPGDLVWVHDYHLLLLPQMLRER-----GPDARIGFFLHIPFPSSEI----FRCLP--- 176 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCEEEEeChhhhHHHHHHHhh-----CCCCeEEEEEeCCCCChHH----HhhCC---
Confidence 34555655555555555444356799999999998888877654 5678999999977653221 11101
Q ss_pred hhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhh------------hhccCCcEEEeeC
Q 043397 293 SIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASV------------LITHRDKYFGILN 360 (596)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~------------~~~~~~ki~vI~n 360 (596)
.+-. +-.++..+|.|.+.+..+++.++..- ... +.....++.++||
T Consensus 177 -------------------~~~~-ll~~~l~~D~igF~t~~~~~~Fl~~~--~~~l~~~~~~~~~i~~~g~~~~i~vip~ 234 (460)
T cd03788 177 -------------------WREE-LLRGLLGADLIGFQTERYARNFLSCC--SRLLGLEVTDDGGVEYGGRRVRVGAFPI 234 (460)
T ss_pred -------------------ChHH-HHHHHhcCCEEEECCHHHHHHHHHHH--HHHcCCcccCCceEEECCEEEEEEEEeC
Confidence 1111 22344558999999988877765321 111 1122357899999
Q ss_pred CCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHH--cC---
Q 043397 361 GIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--LG--- 435 (596)
Q Consensus 361 Gid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~~--- 435 (596)
|||++.|.+.... ...+..+++..+.. +++++|+++||+++.||++.+++|++++.+ ++
T Consensus 235 GID~~~f~~~~~~--------------~~~~~~~~~~~~~~--~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~ 298 (460)
T cd03788 235 GIDPDAFRKLAAS--------------PEVQERAAELRERL--GGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRG 298 (460)
T ss_pred eEcHHHHHHHhcC--------------chhHHHHHHHHHhc--CCCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcC
Confidence 9999888654211 11122233333333 578899999999999999999999998865 33
Q ss_pred -CEEEEEecC--CCCcch----HHHHHHHHHcCC------CCcEEEE-eccCHHHHHHHHHhCCEEEEcCCCCCCchHHH
Q 043397 436 -GQMILLGNS--PVHWVQ----KDFEDLANLHNK------GTSTRIL-LMYSEELSHMLYAAADIVLVPSIYEPCGLAQM 501 (596)
Q Consensus 436 -~~lvIvG~~--~~g~~~----~~l~~~~~~~~~------~~~V~~~-g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~l 501 (596)
++|+++|.. ++++.. +++++++++.+. ...|+++ |.++.+++..+|+.||++++||..|+||++++
T Consensus 299 ~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~l 378 (460)
T cd03788 299 KVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAADVALVTPLRDGMNLVAK 378 (460)
T ss_pred CEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhccEEEeCccccccCcccc
Confidence 578888752 123333 334444444332 1235555 78899999999999999999999999999999
Q ss_pred HHHhcCCc----eEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--h
Q 043397 502 IGMRYGAV----PVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME--N 575 (596)
Q Consensus 502 EAma~G~p----vI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~--~ 575 (596)
|||+||+| +|+|+.+|..+.. .+|++++|.|+++++++|.+++++ ++++++.++++..+ .
T Consensus 379 EAma~g~p~~g~vV~S~~~G~~~~~-----------~~g~lv~p~d~~~la~ai~~~l~~---~~~e~~~~~~~~~~~v~ 444 (460)
T cd03788 379 EYVACQDDDPGVLILSEFAGAAEEL-----------SGALLVNPYDIDEVADAIHRALTM---PLEERRERHRKLREYVR 444 (460)
T ss_pred eeEEEecCCCceEEEeccccchhhc-----------CCCEEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHH
Confidence 99999999 9999988887763 479999999999999999999983 34556666544443 6
Q ss_pred cCCHHHHHHHHHH
Q 043397 576 DNSWNNAAGKYME 588 (596)
Q Consensus 576 ~fs~~~~~~~~~~ 588 (596)
+||++..++++++
T Consensus 445 ~~~~~~w~~~~l~ 457 (460)
T cd03788 445 THDVQAWANSFLD 457 (460)
T ss_pred hCCHHHHHHHHHH
Confidence 8999999999875
No 72
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.96 E-value=1.9e-26 Score=241.58 Aligned_cols=342 Identities=15% Similarity=0.077 Sum_probs=230.4
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeee
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVV 187 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (596)
+|||++++.. .||...++.+|+++|.++||+|++++...... ... ...
T Consensus 1 ~~~i~i~~~g------~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~-~~~-------------------------~~~ 48 (357)
T PRK00726 1 MKKILLAGGG------TGGHVFPALALAEELKKRGWEVLYLGTARGME-ARL-------------------------VPK 48 (357)
T ss_pred CcEEEEEcCc------chHhhhHHHHHHHHHHhCCCEEEEEECCCchh-hhc-------------------------ccc
Confidence 4899998643 48888888899999999999999998543110 000 001
Q ss_pred CCeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhh-CCCCcEEEEcCCccchHHHHHHHHhhhccCCCCc
Q 043397 188 SSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVT-GVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPR 266 (596)
Q Consensus 188 ~gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~-~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~p 266 (596)
.|++++.++.. ..... .....+.....+...+.++.+.. ..+|||||+|++.....+.+... ..++|
T Consensus 49 ~g~~~~~~~~~-~~~~~-----~~~~~l~~~~~~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~------~~~~p 116 (357)
T PRK00726 49 AGIEFHFIPSG-GLRRK-----GSLANLKAPFKLLKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAAR------LLGIP 116 (357)
T ss_pred CCCcEEEEecc-CcCCC-----ChHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHH------HcCCC
Confidence 46777776521 11100 00111222222333333332222 25899999998766544443332 35789
Q ss_pred EEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhh
Q 043397 267 IVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLAS 346 (596)
Q Consensus 267 vv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~ 346 (596)
+|++.|+..+. . ..+..++.+|.++++++....+
T Consensus 117 ~v~~~~~~~~~-------------------~------------------~~r~~~~~~d~ii~~~~~~~~~--------- 150 (357)
T PRK00726 117 LVIHEQNAVPG-------------------L------------------ANKLLARFAKKVATAFPGAFPE--------- 150 (357)
T ss_pred EEEEcCCCCcc-------------------H------------------HHHHHHHHhchheECchhhhhc---------
Confidence 99877653210 0 0111234589999888733111
Q ss_pred hhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHH-
Q 043397 347 VLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLIT- 425 (596)
Q Consensus 347 ~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll- 425 (596)
.+..++++|+||+|.+.+.+.. .+++++++ ++.++++++|+....|++..++
T Consensus 151 ---~~~~~i~vi~n~v~~~~~~~~~----------------------~~~~~~~~--~~~~~i~~~gg~~~~~~~~~~l~ 203 (357)
T PRK00726 151 ---FFKPKAVVTGNPVREEILALAA----------------------PPARLAGR--EGKPTLLVVGGSQGARVLNEAVP 203 (357)
T ss_pred ---cCCCCEEEECCCCChHhhcccc----------------------hhhhccCC--CCCeEEEEECCcHhHHHHHHHHH
Confidence 3568999999999976654321 11234443 5677888999988888876555
Q ss_pred HHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHh
Q 043397 426 HAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMR 505 (596)
Q Consensus 426 ~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma 505 (596)
+|++++.+....++++|+ |+. +.+.+..+ +++. |.+.|+++ ++..+|++||++++++ .+.+++|||+
T Consensus 204 ~a~~~~~~~~~~~~~~G~---g~~-~~~~~~~~-~~~~--v~~~g~~~--~~~~~~~~~d~~i~~~----g~~~~~Ea~~ 270 (357)
T PRK00726 204 EALALLPEALQVIHQTGK---GDL-EEVRAAYA-AGIN--AEVVPFID--DMAAAYAAADLVICRA----GASTVAELAA 270 (357)
T ss_pred HHHHHhhhCcEEEEEcCC---CcH-HHHHHHhh-cCCc--EEEeehHh--hHHHHHHhCCEEEECC----CHHHHHHHHH
Confidence 999888553245678898 765 44444445 6663 99999984 4899999999999876 2689999999
Q ss_pred cCCceEEeCCCCc--------cccccccCCCCCCCccceEEEeCCC--HHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-
Q 043397 506 YGAVPVVRKTGGL--------ADTVFDVDDPSNHEKANGFVFEGID--EGSLNWALDRAFRHFIDKPEEWNRIVQKIME- 574 (596)
Q Consensus 506 ~G~pvI~s~~gg~--------~e~i~~~~~~~~~~~~~G~lv~~~d--~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~- 574 (596)
+|+|+|++..++. .+.+.+ .++|+++++.| +++|+++|+++++ |++.+++|++++.+
T Consensus 271 ~g~Pvv~~~~~~~~~~~~~~~~~~i~~--------~~~g~~~~~~~~~~~~l~~~i~~ll~----~~~~~~~~~~~~~~~ 338 (357)
T PRK00726 271 AGLPAILVPLPHAADDHQTANARALVD--------AGAALLIPQSDLTPEKLAEKLLELLS----DPERLEAMAEAARAL 338 (357)
T ss_pred hCCCEEEecCCCCCcCcHHHHHHHHHH--------CCCEEEEEcccCCHHHHHHHHHHHHc----CHHHHHHHHHHHHhc
Confidence 9999999876542 245555 57899999887 9999999999999 99999999988776
Q ss_pred -hcCCHHHHHHHHHHHHH
Q 043397 575 -NDNSWNNAAGKYMEIYN 591 (596)
Q Consensus 575 -~~fs~~~~~~~~~~iy~ 591 (596)
+.++.+++++.++++.+
T Consensus 339 ~~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 339 GKPDAAERLADLIEELAR 356 (357)
T ss_pred CCcCHHHHHHHHHHHHhh
Confidence 67888889888887654
No 73
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=99.95 E-value=1.7e-27 Score=234.29 Aligned_cols=221 Identities=36% Similarity=0.619 Sum_probs=161.9
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeE------EeecCCceEEEEEE
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTY------NSYHDGNWVATNAY 183 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 183 (596)
|||++|+|++|+.++||++.++..|+++|+++||+|.|++|.|....... ........+ .++... +....++
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y~~~~~~~-~~~~~~~~~~~~~~~~v~~~~-~~~~~v~ 78 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKYGFIDEEY-FQLEPVRRLSVPFGGPVPVGV-WYEVRVY 78 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-THHHHHHC-TTEEEEEEES-STTCEEEEE-----EEEE
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccchhhhhhh-hcceEEEEecccccccccccc-ceEEEEE
Confidence 79999999999889999999999999999999999999999997765543 112222222 222222 2677888
Q ss_pred eeeeCCeEEEEEcCCccccCCCcccCC---C-hhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhh
Q 043397 184 HGVVSSIPVIFIEPSNQFFKGKNVYGG---S-YNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQS 259 (596)
Q Consensus 184 ~~~~~gv~v~~~~~~~~~~~~~~~y~~---~-~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~ 259 (596)
+...+|++++++.+ ..++.+..+|+. + .++.+++.+|+++++++++..+.+|||||+|+|+++++|.+++..++.
T Consensus 79 ~~~~~~v~v~~i~~-~~~f~r~~iY~~~~~~~~d~~~rf~~fs~a~le~~~~l~~~pDIIH~hDW~tal~p~~lk~~~~~ 157 (245)
T PF08323_consen 79 RYPVDGVPVYFIDN-PEYFDRPGIYGDNGGDYPDNAERFAFFSRAALELLKKLGWKPDIIHCHDWHTALAPLYLKERYQQ 157 (245)
T ss_dssp EEEETTEEEEEEES-HHHHGSSSSSBSTSSBHTTHHHHHHHHHHHHHHHHCTCT-S-SEEEEECGGGTTHHHHHHHCCSS
T ss_pred EEEcCCccEEEecC-hhhccccceeccCCCcchhHHHHHHHHHHHHHHHHHhhCCCCCEEEecCchHHHHHHHhcccccc
Confidence 88899999999994 456677779975 3 388999999999999999987779999999999999999999876543
Q ss_pred cc-CCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHH
Q 043397 260 LS-LKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKET 338 (596)
Q Consensus 260 ~~-~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~ 338 (596)
.. +.++|+|+|+||..+++.+....+...+++...+...... .....+++++.++.+||.|+|||+++++++
T Consensus 158 ~~~~~~~~~v~TIHN~~yqg~~~~~~~~~~gl~~~~~~~~~~~-------~~~~~in~lk~gi~~AD~v~TVS~~Ya~Ei 230 (245)
T PF08323_consen 158 DPFFANIPTVFTIHNLEYQGIFPPEDLKALGLPDEYFQNLDEY-------EFYGQINFLKAGIVYADKVTTVSPTYAREI 230 (245)
T ss_dssp ------SEEEEEESSTT---EEEGGGGGCTT-GGGGS-STTTT-------EETTEEEHHHHHHHHSSEEEESSHHHHHHT
T ss_pred ccccccceeEEEEcccccCCcCCHHHHHHcCCCHHHhcccccc-------ccccccCHHHHHHHhcCEeeeCCHHHHHHH
Confidence 33 5679999999999999998887777777776443222221 123678999999999999999999999998
Q ss_pred hh
Q 043397 339 LC 340 (596)
Q Consensus 339 ~~ 340 (596)
+.
T Consensus 231 ~~ 232 (245)
T PF08323_consen 231 QT 232 (245)
T ss_dssp TS
T ss_pred hC
Confidence 73
No 74
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.94 E-value=1.2e-24 Score=227.31 Aligned_cols=331 Identities=15% Similarity=0.082 Sum_probs=219.8
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCC
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSS 189 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (596)
+|++.+. ..||-.+++..++++|.++||+|+++|........ .. ...|
T Consensus 1 ~~~~~~~------~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~-~~-------------------------~~~~ 48 (350)
T cd03785 1 RILIAGG------GTGGHIFPALALAEELRERGAEVLFLGTKRGLEAR-LV-------------------------PKAG 48 (350)
T ss_pred CEEEEec------CchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhh-cc-------------------------cccC
Confidence 4566543 34888888899999999999999999864321100 00 0135
Q ss_pred eEEEEEcCCccccCCCcccCCChhhHHHH---HHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCc
Q 043397 190 IPVIFIEPSNQFFKGKNVYGGSYNELEAY---LFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPR 266 (596)
Q Consensus 190 v~v~~~~~~~~~~~~~~~y~~~~~~~~~~---~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~p 266 (596)
++++.++.. .+.. .. .......+ ......+.++++. .+||+||+|.+.......+... ..++|
T Consensus 49 ~~~~~~~~~-~~~~-~~----~~~~~~~~~~~~~~~~~~~~~i~~--~~pDvI~~~~~~~~~~~~~~a~------~~~~p 114 (350)
T cd03785 49 IPLHTIPVG-GLRR-KG----SLKKLKAPFKLLKGVLQARKILKK--FKPDVVVGFGGYVSGPVGLAAK------LLGIP 114 (350)
T ss_pred CceEEEEec-CcCC-CC----hHHHHHHHHHHHHHHHHHHHHHHh--cCCCEEEECCCCcchHHHHHHH------HhCCC
Confidence 666666521 1111 00 00111111 1122233334433 6899999997655433333222 34788
Q ss_pred EEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhh
Q 043397 267 IVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLAS 346 (596)
Q Consensus 267 vv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~ 346 (596)
++++.|+..+. .. .+...+.+|.|+++|+...+.
T Consensus 115 ~v~~~~~~~~~----------------~~---------------------~~~~~~~~~~vi~~s~~~~~~--------- 148 (350)
T cd03785 115 LVIHEQNAVPG----------------LA---------------------NRLLARFADRVALSFPETAKY--------- 148 (350)
T ss_pred EEEEcCCCCcc----------------HH---------------------HHHHHHhhCEEEEcchhhhhc---------
Confidence 88766543210 00 011234489999999866554
Q ss_pred hhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHH-HHH
Q 043397 347 VLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLH-LIT 425 (596)
Q Consensus 347 ~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~-~ll 425 (596)
.+..++.+|+||+|.+.+.+.. .++.++++ ++.++++++|+....|+.+ .++
T Consensus 149 ---~~~~~~~~i~n~v~~~~~~~~~----------------------~~~~~~~~--~~~~~i~~~~g~~~~~~~~~~l~ 201 (350)
T cd03785 149 ---FPKDKAVVTGNPVREEILALDR----------------------ERARLGLR--PGKPTLLVFGGSQGARAINEAVP 201 (350)
T ss_pred ---CCCCcEEEECCCCchHHhhhhh----------------------hHHhcCCC--CCCeEEEEECCcHhHHHHHHHHH
Confidence 2357899999999977654320 14556664 6677888888777777765 456
Q ss_pred HHHHHHHHcCCEE-EEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHH
Q 043397 426 HAIKRAEELGGQM-ILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGM 504 (596)
Q Consensus 426 ~A~~~l~~~~~~l-vIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAm 504 (596)
+++..+.++++++ +++|. | ..+.+++.++++ .++|+|.|++ +++..+|+.||++++++- +++++|||
T Consensus 202 ~a~~~l~~~~~~~~~i~G~---g-~~~~l~~~~~~~--~~~v~~~g~~--~~~~~~l~~ad~~v~~sg----~~t~~Eam 269 (350)
T cd03785 202 EALAELLRKRLQVIHQTGK---G-DLEEVKKAYEEL--GVNYEVFPFI--DDMAAAYAAADLVISRAG----ASTVAELA 269 (350)
T ss_pred HHHHHhhccCeEEEEEcCC---c-cHHHHHHHHhcc--CCCeEEeehh--hhHHHHHHhcCEEEECCC----HhHHHHHH
Confidence 8888886556664 46787 6 557788777766 4689999998 458999999999998762 68999999
Q ss_pred hcCCceEEeCCCCc--------cccccccCCCCCCCccceEEEeCC--CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043397 505 RYGAVPVVRKTGGL--------ADTVFDVDDPSNHEKANGFVFEGI--DEGSLNWALDRAFRHFIDKPEEWNRIVQKIME 574 (596)
Q Consensus 505 a~G~pvI~s~~gg~--------~e~i~~~~~~~~~~~~~G~lv~~~--d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~ 574 (596)
++|+|+|+++.++. .+.+.+ .++|+++++. |+++|+++|.++++ +++.+++|++++.+
T Consensus 270 ~~G~Pvv~~~~~~~~~~~~~~~~~~l~~--------~g~g~~v~~~~~~~~~l~~~i~~ll~----~~~~~~~~~~~~~~ 337 (350)
T cd03785 270 ALGLPAILIPLPYAADDHQTANARALVK--------AGAAVLIPQEELTPERLAAALLELLS----DPERLKAMAEAARS 337 (350)
T ss_pred HhCCCEEEeecCCCCCCcHHHhHHHHHh--------CCCEEEEecCCCCHHHHHHHHHHHhc----CHHHHHHHHHHHHh
Confidence 99999999876541 345555 5799999987 89999999999998 89999999988765
Q ss_pred --hcCCHHHHH
Q 043397 575 --NDNSWNNAA 583 (596)
Q Consensus 575 --~~fs~~~~~ 583 (596)
+.+.-++++
T Consensus 338 ~~~~~~~~~i~ 348 (350)
T cd03785 338 LARPDAAERIA 348 (350)
T ss_pred cCCCCHHHHHH
Confidence 455555554
No 75
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.94 E-value=4.4e-25 Score=249.29 Aligned_cols=318 Identities=15% Similarity=0.118 Sum_probs=224.2
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCch
Q 043397 214 ELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGS 293 (596)
Q Consensus 214 ~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~ 293 (596)
.+..|....+...+.+...-..-|+|.+|+++..++|..+... .++.++.+.+|...|... .+..+...
T Consensus 126 ~w~~Y~~vN~~FA~~i~~~~~~~d~vWvhDYhL~llp~~lR~~-----~~~~~igfFlHiPFPs~e----~fr~lp~r-- 194 (797)
T PLN03063 126 QYDAYKKANRMFLDVVKENYEEGDVVWCHDYHLMFLPQYLKEY-----NNKMKVGWFLHTPFPSSE----IYKTLPSR-- 194 (797)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEecchhhhHHHHHHHh-----CCCCcEEEEecCCCCCHH----HHhhCCCH--
Confidence 3445554444444444333344589999999999999998765 688999999998876322 11111111
Q ss_pred hhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhh-----------hccCCcEEEeeCCC
Q 043397 294 IYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVL-----------ITHRDKYFGILNGI 362 (596)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~-----------~~~~~ki~vI~nGi 362 (596)
.-+-.++..+|.|-+.+..+++.++.. ....+ .....+|.++||||
T Consensus 195 ---------------------~~il~gll~aDligF~t~~y~r~Fl~~--~~r~l~~~~~~~~i~~~gr~~~I~viP~GI 251 (797)
T PLN03063 195 ---------------------SELLRAVLTADLIGFHTYDFARHFLSA--CTRILGVEGTHEGVVDQGKVTRVAVFPIGI 251 (797)
T ss_pred ---------------------HHHHHHHhcCCEEEeCCHHHHHHHHHH--HHHHhCccccCCceEECCeEEEEEEEeccc
Confidence 112335666999999999999988742 11111 12235789999999
Q ss_pred CCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHH--cCC----
Q 043397 363 DTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--LGG---- 436 (596)
Q Consensus 363 d~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~~~---- 436 (596)
|++.|.+.... . ........+++.+ .++++|+++||+++.||++.+++|++++.+ +++
T Consensus 252 D~~~f~~~~~~----------~-~~~~~~~~lr~~~-----~~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kv 315 (797)
T PLN03063 252 DPERFINTCEL----------P-EVKQHMKELKRFF-----AGRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKV 315 (797)
T ss_pred CHHHHHHHhcC----------h-hHHHHHHHHHHhc-----CCCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcE
Confidence 98877543110 0 0011122334443 357899999999999999999999999865 443
Q ss_pred EEEEEecC--CCCcchHHHHHHHHHcC--CCC--------cEEEE-eccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHH
Q 043397 437 QMILLGNS--PVHWVQKDFEDLANLHN--KGT--------STRIL-LMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIG 503 (596)
Q Consensus 437 ~lvIvG~~--~~g~~~~~l~~~~~~~~--~~~--------~V~~~-g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEA 503 (596)
.|+.++.. .+++..+.+++.++++. +.. -|+++ +.++.+++..+|+.||++++||..||+|++++||
T Consensus 316 vLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEa 395 (797)
T PLN03063 316 MLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEF 395 (797)
T ss_pred EEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhH
Confidence 34434321 23556666766666553 211 14444 5789999999999999999999999999999999
Q ss_pred HhcCCc----eEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--hcC
Q 043397 504 MRYGAV----PVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME--NDN 577 (596)
Q Consensus 504 ma~G~p----vI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~--~~f 577 (596)
||||+| +|+|..+|..+.+. .+|++++|.|+++++++|.+++++ ++++++++.++..+ .++
T Consensus 396 mA~g~p~~gvlVlSe~~G~~~~l~----------~~allVnP~D~~~lA~AI~~aL~m---~~~er~~r~~~~~~~v~~~ 462 (797)
T PLN03063 396 VACQKAKKGVLVLSEFAGAGQSLG----------AGALLVNPWNITEVSSAIKEALNM---SDEERETRHRHNFQYVKTH 462 (797)
T ss_pred heeecCCCCCEEeeCCcCchhhhc----------CCeEEECCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhhhhC
Confidence 999999 99999999988763 479999999999999999999985 55555554444333 689
Q ss_pred CHHHHHHHHHHHHHHHh
Q 043397 578 SWNNAAGKYMEIYNSIR 594 (596)
Q Consensus 578 s~~~~~~~~~~iy~~l~ 594 (596)
+|+..++.+++.+++..
T Consensus 463 ~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 463 SAQKWADDFMSELNDII 479 (797)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999998887653
No 76
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.94 E-value=2.3e-24 Score=224.96 Aligned_cols=330 Identities=15% Similarity=0.087 Sum_probs=209.1
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeC
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVS 188 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (596)
|||++++.+. ||-...+..|+++|.++||+|++++...... .. . ....
T Consensus 1 ~~i~~~~g~~------~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~-~~-~------------------------~~~~ 48 (348)
T TIGR01133 1 KKVVLAAGGT------GGHIFPALAVAEELIKRGVEVLWLGTKRGLE-KR-L------------------------VPKA 48 (348)
T ss_pred CeEEEEeCcc------HHHHhHHHHHHHHHHhCCCEEEEEeCCCcch-hc-c------------------------cccC
Confidence 6899886332 3333344689999999999999998532110 00 0 0014
Q ss_pred CeEEEEEcCCccccCCCcccCCChhhHHHH---HHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCC
Q 043397 189 SIPVIFIEPSNQFFKGKNVYGGSYNELEAY---LFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKP 265 (596)
Q Consensus 189 gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~---~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (596)
|++++.++.. .+.. .. ....+... ......+.++++ ..+||+||+|.+.....+.++.. ..++
T Consensus 49 g~~~~~i~~~-~~~~-~~----~~~~l~~~~~~~~~~~~l~~~i~--~~~pDvVi~~~~~~~~~~~~~~~------~~~~ 114 (348)
T TIGR01133 49 GIEFYFIPVG-GLRR-KG----SFRLIKTPLKLLKAVFQARRILK--KFKPDAVIGFGGYVSGPAGLAAK------LLGI 114 (348)
T ss_pred CCceEEEecc-CcCC-CC----hHHHHHHHHHHHHHHHHHHHHHH--hcCCCEEEEcCCcccHHHHHHHH------HcCC
Confidence 6676666521 1100 00 00111111 222233334444 36899999997655444433322 2467
Q ss_pred cEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhh
Q 043397 266 RIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLA 345 (596)
Q Consensus 266 pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~ 345 (596)
|++++.|+..+ . .. .+...+.+|.++++|+...+.+
T Consensus 115 p~v~~~~~~~~---------------~----~~------------------~~~~~~~~d~ii~~~~~~~~~~------- 150 (348)
T TIGR01133 115 PLFHHEQNAVP---------------G----LT------------------NKLLSRFAKKVLISFPGAKDHF------- 150 (348)
T ss_pred CEEEECCCCCc---------------c----HH------------------HHHHHHHhCeeEECchhHhhcC-------
Confidence 88754432211 0 00 1112345899999998766552
Q ss_pred hhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHH-H
Q 043397 346 SVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHL-I 424 (596)
Q Consensus 346 ~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~-l 424 (596)
+..+|+||+|...+.+.. .++.++++ ++.++|+++|+....|++.. +
T Consensus 151 --------~~~~i~n~v~~~~~~~~~----------------------~~~~~~~~--~~~~~i~~~gg~~~~~~~~~~l 198 (348)
T TIGR01133 151 --------EAVLVGNPVRQEIRSLPV----------------------PRERFGLR--EGKPTILVLGGSQGAKILNELV 198 (348)
T ss_pred --------CceEEcCCcCHHHhcccc----------------------hhhhcCCC--CCCeEEEEECCchhHHHHHHHH
Confidence 347999999866543320 01245554 67788999998878888654 5
Q ss_pred HHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHH
Q 043397 425 THAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGM 504 (596)
Q Consensus 425 l~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAm 504 (596)
++|++.+.+++++++++++ +...+.+++.++++++.+.+.|. .. ++..+|++||+++.++ .+++++|||
T Consensus 199 ~~a~~~l~~~~~~~~~~~g---~~~~~~l~~~~~~~~l~~~v~~~---~~-~~~~~l~~ad~~v~~~----g~~~l~Ea~ 267 (348)
T TIGR01133 199 PKALAKLAEKGIQIVHQTG---KNDLEKVKNVYQELGIEAIVTFI---DE-NMAAAYAAADLVISRA----GASTVAELA 267 (348)
T ss_pred HHHHHHHhhcCcEEEEECC---cchHHHHHHHHhhCCceEEecCc---cc-CHHHHHHhCCEEEECC----ChhHHHHHH
Confidence 6888888666677755443 22347788878777764444454 22 5889999999999864 278999999
Q ss_pred hcCCceEEeCCCCc-------cccccccCCCCCCCccceEEEeCCC--HHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-
Q 043397 505 RYGAVPVVRKTGGL-------ADTVFDVDDPSNHEKANGFVFEGID--EGSLNWALDRAFRHFIDKPEEWNRIVQKIME- 574 (596)
Q Consensus 505 a~G~pvI~s~~gg~-------~e~i~~~~~~~~~~~~~G~lv~~~d--~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~- 574 (596)
++|+|+|+++.+|. .+++.+ +++|+++++.| +++|+++|.++++ |++.+++|++++.+
T Consensus 268 ~~g~Pvv~~~~~~~~~~~~~~~~~i~~--------~~~G~~~~~~~~~~~~l~~~i~~ll~----~~~~~~~~~~~~~~~ 335 (348)
T TIGR01133 268 AAGVPAILIPYPYAADDQYYNAKFLED--------LGAGLVIRQKELLPEKLLEALLKLLL----DPANLEAMAEAARKL 335 (348)
T ss_pred HcCCCEEEeeCCCCccchhhHHHHHHH--------CCCEEEEecccCCHHHHHHHHHHHHc----CHHHHHHHHHHHHhc
Confidence 99999999887652 246666 68999998876 9999999999998 99999999987764
Q ss_pred -hcCCHHHHH
Q 043397 575 -NDNSWNNAA 583 (596)
Q Consensus 575 -~~fs~~~~~ 583 (596)
..+.-++++
T Consensus 336 ~~~~~~~~i~ 345 (348)
T TIGR01133 336 AKPDAAKRIA 345 (348)
T ss_pred CCccHHHHHH
Confidence 334444443
No 77
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.94 E-value=8.5e-24 Score=223.42 Aligned_cols=358 Identities=11% Similarity=0.068 Sum_probs=226.9
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccc---eeeeEEeecCCceEEEEEE
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLA---LITTYNSYHDGNWVATNAY 183 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 183 (596)
++||||++|..+ .+|-...+..|+++|.++||+|.++++....... ...... +...+... ...|
T Consensus 3 ~~~rili~t~~~-----G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~-~~~~~~~~~y~~~~~~~-------~~~~ 69 (380)
T PRK13609 3 KNPKVLILTAHY-----GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHP-VITEITKYLYLKSYTIG-------KELY 69 (380)
T ss_pred CCCeEEEEEcCC-----CchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcch-HHHHHHHHHHHHHHHHh-------HHHH
Confidence 568999999876 2599999999999999999998888765432210 000000 00000000 0000
Q ss_pred eeeeCCeEEEEEcCCccccCCCcccCCChhhHHHH-HHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccC
Q 043397 184 HGVVSSIPVIFIEPSNQFFKGKNVYGGSYNELEAY-LFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSL 262 (596)
Q Consensus 184 ~~~~~gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~-~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~ 262 (596)
. .. +.. ....+.. .....+ ....+.+.++++. .+||+||++.+.. .++.+.+. ..
T Consensus 70 ~-----~~-~~~--------~~~~~~~--~~~~~~~~~~~~~l~~~l~~--~~pD~Vi~~~~~~-~~~~~~~~-----~~ 125 (380)
T PRK13609 70 R-----LF-YYG--------VEKIYDK--KIFSWYANFGRKRLKLLLQA--EKPDIVINTFPII-AVPELKKQ-----TG 125 (380)
T ss_pred H-----HH-Hhc--------cCcccch--HHHHHHHHHHHHHHHHHHHH--hCcCEEEEcChHH-HHHHHHHh-----cC
Confidence 0 00 000 0000000 000001 1112445555554 6899999974332 23322211 13
Q ss_pred CCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcc
Q 043397 263 KKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSG 342 (596)
Q Consensus 263 ~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g 342 (596)
.++|++..+++.... . + ...+.+|.++++|+..++.+.+.|
T Consensus 126 ~~ip~~~~~td~~~~--------------~-------~------------------~~~~~ad~i~~~s~~~~~~l~~~g 166 (380)
T PRK13609 126 ISIPTYNVLTDFCLH--------------K-------I------------------WVHREVDRYFVATDHVKKVLVDIG 166 (380)
T ss_pred CCCCeEEEeCCCCCC--------------c-------c------------------cccCCCCEEEECCHHHHHHHHHcC
Confidence 468887655543210 0 0 012348999999999988876554
Q ss_pred hhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCcc-EEEEEecccccCCH
Q 043397 343 WLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVP-LVVCITRLVAQKGL 421 (596)
Q Consensus 343 ~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~-~il~iGrl~~~KGi 421 (596)
.+.+++.++.|+++.. |.+.. .+..++++++++ ++++ ++++.|++...|++
T Consensus 167 -------i~~~ki~v~G~p~~~~-f~~~~------------------~~~~~~~~~~l~--~~~~~il~~~G~~~~~k~~ 218 (380)
T PRK13609 167 -------VPPEQVVETGIPIRSS-FELKI------------------NPDIIYNKYQLC--PNKKILLIMAGAHGVLGNV 218 (380)
T ss_pred -------CChhHEEEECcccChH-HcCcC------------------CHHHHHHHcCCC--CCCcEEEEEcCCCCCCcCH
Confidence 4567888876665532 22110 123467788885 4544 55667889989999
Q ss_pred HHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHH
Q 043397 422 HLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQM 501 (596)
Q Consensus 422 ~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~l 501 (596)
+.+++++.+. ++++++++|+ .++...+.+++++++++ ++|+|+|++++ +.++|+.||+++. ++.|++++
T Consensus 219 ~~li~~l~~~--~~~~~viv~G-~~~~~~~~l~~~~~~~~--~~v~~~g~~~~--~~~l~~~aD~~v~----~~gg~t~~ 287 (380)
T PRK13609 219 KELCQSLMSV--PDLQVVVVCG-KNEALKQSLEDLQETNP--DALKVFGYVEN--IDELFRVTSCMIT----KPGGITLS 287 (380)
T ss_pred HHHHHHHhhC--CCcEEEEEeC-CCHHHHHHHHHHHhcCC--CcEEEEechhh--HHHHHHhccEEEe----CCCchHHH
Confidence 9999988643 6789887754 12345677777776655 58999999975 8899999999884 46799999
Q ss_pred HHHhcCCceEEeC-CCCcc----ccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--
Q 043397 502 IGMRYGAVPVVRK-TGGLA----DTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME-- 574 (596)
Q Consensus 502 EAma~G~pvI~s~-~gg~~----e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~-- 574 (596)
|||++|+|+|+++ .+|.. +.+. .+|+.+...|+++++++|.++++ |++.+++|++++.+
T Consensus 288 EA~a~g~PvI~~~~~~g~~~~n~~~~~----------~~G~~~~~~~~~~l~~~i~~ll~----~~~~~~~m~~~~~~~~ 353 (380)
T PRK13609 288 EAAALGVPVILYKPVPGQEKENAMYFE----------RKGAAVVIRDDEEVFAKTEALLQ----DDMKLLQMKEAMKSLY 353 (380)
T ss_pred HHHHhCCCEEECCCCCCcchHHHHHHH----------hCCcEEEECCHHHHHHHHHHHHC----CHHHHHHHHHHHHHhC
Confidence 9999999999975 55532 2232 24555556799999999999998 99999999877655
Q ss_pred hcCCHHHHHHHHHHHHHHH
Q 043397 575 NDNSWNNAAGKYMEIYNSI 593 (596)
Q Consensus 575 ~~fs~~~~~~~~~~iy~~l 593 (596)
..++++++++.+++++...
T Consensus 354 ~~~s~~~i~~~i~~~~~~~ 372 (380)
T PRK13609 354 LPEPADHIVDDILAENHVE 372 (380)
T ss_pred CCchHHHHHHHHHHhhhhh
Confidence 6789999999999887643
No 78
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.93 E-value=3.3e-24 Score=242.91 Aligned_cols=316 Identities=17% Similarity=0.150 Sum_probs=216.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCc
Q 043397 213 NELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDG 292 (596)
Q Consensus 213 ~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~ 292 (596)
..+..|....+...+.+......-|+|.+|++|..++|..+... .+..++-+.+|...|.... +..+...
T Consensus 111 ~~w~~Y~~vN~~fA~~~~~~~~~~d~vwvhDYhl~l~p~~lr~~-----~~~~~igfFlH~pfP~~~~----f~~lp~~- 180 (726)
T PRK14501 111 RFWESYERVNQRFAEAIAAIARPGDVVWVHDYQLMLLPAMLRER-----LPDARIGFFLHIPFPSFEV----FRLLPWR- 180 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCchhhhHHHHHHhh-----CCCCcEEEEeeCCCCChHH----HhhCCCh-
Confidence 34455655555555444443345589999999999999988765 5788999999988764321 1111111
Q ss_pred hhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhh-----------ccCCcEEEeeCC
Q 043397 293 SIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLI-----------THRDKYFGILNG 361 (596)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~-----------~~~~ki~vI~nG 361 (596)
.-+-.++..+|.|-+.+..+++.++.. ....+. ....++.++|||
T Consensus 181 ----------------------~~ll~~ll~~Dligf~t~~~~r~Fl~~--~~~~l~~~~~~~~~~~~gr~~~v~v~p~G 236 (726)
T PRK14501 181 ----------------------EEILEGLLGADLIGFHTYDYVRHFLSS--VLRVLGYETELGEIRLGGRIVRVDAFPMG 236 (726)
T ss_pred ----------------------HHHHHHHhcCCeEEeCCHHHHHHHHHH--HHHHcCCccCCCeEEECCEEEEEEEEECe
Confidence 112234566999999999988887642 111111 123468999999
Q ss_pred CCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHH--c----C
Q 043397 362 IDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--L----G 435 (596)
Q Consensus 362 id~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~----~ 435 (596)
||++.|.+.... . ........+++.+ .++++|+++||+++.||++.+++|++++.+ + +
T Consensus 237 ID~~~f~~~~~~----------~-~~~~~~~~lr~~~-----~~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~ 300 (726)
T PRK14501 237 IDYDKFHNSAQD----------P-EVQEEIRRLRQDL-----RGRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGK 300 (726)
T ss_pred EcHHHHHHHhcC----------c-hHHHHHHHHHHHc-----CCCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCC
Confidence 999988654211 0 0011122234432 467799999999999999999999999865 3 3
Q ss_pred CEEEEEecC-CCC-cchHHHHHHHH----HcC----C---CCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHH
Q 043397 436 GQMILLGNS-PVH-WVQKDFEDLAN----LHN----K---GTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMI 502 (596)
Q Consensus 436 ~~lvIvG~~-~~g-~~~~~l~~~~~----~~~----~---~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lE 502 (596)
++|+++|.. .+| +..+.+++.++ +.+ . .+-+.+.|.++.+++..+|+.||++++||..||||++++|
T Consensus 301 v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~E 380 (726)
T PRK14501 301 VRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKE 380 (726)
T ss_pred EEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhccEEEecccccccCcccce
Confidence 678888741 223 33334444333 222 1 1234566899999999999999999999999999999999
Q ss_pred HHhcCC-----ceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--h
Q 043397 503 GMRYGA-----VPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME--N 575 (596)
Q Consensus 503 Ama~G~-----pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~--~ 575 (596)
||+||+ ||++...|+..+++ .|++++|.|+++++++|.+++++ ..+.+.+..+++.+ .
T Consensus 381 ama~~~~~~g~~vls~~~G~~~~l~------------~~llv~P~d~~~la~ai~~~l~~---~~~e~~~r~~~~~~~v~ 445 (726)
T PRK14501 381 YVASRTDGDGVLILSEMAGAAAELA------------EALLVNPNDIEGIAAAIKRALEM---PEEEQRERMQAMQERLR 445 (726)
T ss_pred EEEEcCCCCceEEEecccchhHHhC------------cCeEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHH
Confidence 999954 55556667777764 48999999999999999999984 22222222222222 5
Q ss_pred cCCHHHHHHHHHHHHHHH
Q 043397 576 DNSWNNAAGKYMEIYNSI 593 (596)
Q Consensus 576 ~fs~~~~~~~~~~iy~~l 593 (596)
+|||+.+++++++.|+++
T Consensus 446 ~~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 446 RYDVHKWASDFLDELREA 463 (726)
T ss_pred hCCHHHHHHHHHHHHHHH
Confidence 899999999999999876
No 79
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.92 E-value=3.1e-23 Score=222.38 Aligned_cols=232 Identities=14% Similarity=0.071 Sum_probs=169.1
Q ss_pred hchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHh
Q 043397 317 LKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQK 396 (596)
Q Consensus 317 ~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~ 396 (596)
.+..++.+|.|+++|+..++.+.+.| .+.+ +.+++|+ +.+.+.+.. .......+++
T Consensus 172 ~r~~~~~~d~ii~~S~~~~~~l~~~g-------~~~~-i~vi~n~-~~d~~~~~~---------------~~~~~~~~r~ 227 (425)
T PRK05749 172 YRLLFKNIDLVLAQSEEDAERFLALG-------AKNE-VTVTGNL-KFDIEVPPE---------------LAARAATLRR 227 (425)
T ss_pred HHHHHHhCCEEEECCHHHHHHHHHcC-------CCCC-cEecccc-cccCCCChh---------------hHHHHHHHHH
Confidence 34456678999999999999976554 3345 8888884 332222110 0112334566
Q ss_pred hcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHH--cCCEEEEEecCCCCcch-HHHHHHHHHcCCCC---------
Q 043397 397 GLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--LGGQMILLGNSPVHWVQ-KDFEDLANLHNKGT--------- 464 (596)
Q Consensus 397 ~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~~~~lvIvG~~~~g~~~-~~l~~~~~~~~~~~--------- 464 (596)
.++ +++++++++|+. .|+.+.+++|++++.+ ++++|+|+|+ |+.. ++++++++++|+..
T Consensus 228 ~~~----~~~~vil~~~~~--~~~~~~ll~A~~~l~~~~~~~~liivG~---g~~r~~~l~~~~~~~gl~~~~~~~~~~~ 298 (425)
T PRK05749 228 QLA----PNRPVWIAASTH--EGEEELVLDAHRALLKQFPNLLLILVPR---HPERFKEVEELLKKAGLSYVRRSQGEPP 298 (425)
T ss_pred Hhc----CCCcEEEEeCCC--chHHHHHHHHHHHHHHhCCCcEEEEcCC---ChhhHHHHHHHHHhCCCcEEEccCCCCC
Confidence 665 245778888864 6889999999999865 6899999999 8775 78999998888741
Q ss_pred ----cEEEEeccCHHHHHHHHHhCCEEEE-cCCCCCCchHHHHHHhcCCceEEeCC-CCccccccccCCCCCCCccceEE
Q 043397 465 ----STRILLMYSEELSHMLYAAADIVLV-PSIYEPCGLAQMIGMRYGAVPVVRKT-GGLADTVFDVDDPSNHEKANGFV 538 (596)
Q Consensus 465 ----~V~~~g~~~~~~l~~~~a~aDi~l~-PS~~E~~gl~~lEAma~G~pvI~s~~-gg~~e~i~~~~~~~~~~~~~G~l 538 (596)
+|.+.+. .+++..+|+.||++++ +|..|++|.+++|||+||+|||+++. ++..++++.. ..+|++
T Consensus 299 ~~~~~v~l~~~--~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~-------~~~g~~ 369 (425)
T PRK05749 299 SADTDVLLGDT--MGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERL-------LQAGAA 369 (425)
T ss_pred CCCCcEEEEec--HHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHH-------HHCCCe
Confidence 2333332 3579999999999666 67779999999999999999999754 6677766542 136888
Q ss_pred EeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 043397 539 FEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIMENDNSWNNAAGKYMEIYNSIR 594 (596)
Q Consensus 539 v~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~iy~~l~ 594 (596)
+.+.|+++|+++|.++++ |++.+++|++++.+.--+....++++++++++.+
T Consensus 370 ~~~~d~~~La~~l~~ll~----~~~~~~~m~~~a~~~~~~~~~~~~~~~~~l~~~l 421 (425)
T PRK05749 370 IQVEDAEDLAKAVTYLLT----DPDARQAYGEAGVAFLKQNQGALQRTLQLLEPYL 421 (425)
T ss_pred EEECCHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhc
Confidence 888899999999999998 9999999997776511111467777877777654
No 80
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.92 E-value=1.1e-22 Score=214.31 Aligned_cols=221 Identities=16% Similarity=0.115 Sum_probs=158.5
Q ss_pred hhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHH
Q 043397 316 LLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQ 395 (596)
Q Consensus 316 ~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~ 395 (596)
.++..++.+|.|+++|+...+.+... ..++++|+||+|.+.|.+...... . .+
T Consensus 146 ~e~~~~~~ad~vi~~S~~l~~~~~~~----------~~~i~~i~ngvd~~~f~~~~~~~~---------------~--~~ 198 (373)
T cd04950 146 AERRLLKRADLVFTTSPSLYEAKRRL----------NPNVVLVPNGVDYEHFAAARDPPP---------------P--PA 198 (373)
T ss_pred HHHHHHHhCCEEEECCHHHHHHHhhC----------CCCEEEcccccCHHHhhcccccCC---------------C--hh
Confidence 35566788999999999888775432 268999999999988865421100 0 00
Q ss_pred hhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHH
Q 043397 396 KGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEE 475 (596)
Q Consensus 396 ~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~ 475 (596)
. +. ..++++++|+|++.+.++++++.++++. .++++|+|+|. ++....... +...+||+|+|.++.+
T Consensus 199 ~-~~---~~~~~~i~y~G~l~~~~d~~ll~~la~~--~p~~~~vliG~---~~~~~~~~~----~~~~~nV~~~G~~~~~ 265 (373)
T cd04950 199 D-LA---ALPRPVIGYYGAIAEWLDLELLEALAKA--RPDWSFVLIGP---VDVSIDPSA----LLRLPNVHYLGPKPYK 265 (373)
T ss_pred H-Hh---cCCCCEEEEEeccccccCHHHHHHHHHH--CCCCEEEEECC---CcCccChhH----hccCCCEEEeCCCCHH
Confidence 0 00 1467899999999998888877665543 37899999998 522222221 1224789999999999
Q ss_pred HHHHHHHhCCEEEEcCCC-----CCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHH
Q 043397 476 LSHMLYAAADIVLVPSIY-----EPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWA 550 (596)
Q Consensus 476 ~l~~~~a~aDi~l~PS~~-----E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~ 550 (596)
++..+|+.+|++++|+.. +++|++++||||||+|||+++.+ ++++. .+.+ ++.+.|+++++++
T Consensus 266 ~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~---~~~~~--------~~~~-~~~~~d~~~~~~a 333 (373)
T cd04950 266 ELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLP---EVRRY--------EDEV-VLIADDPEEFVAA 333 (373)
T ss_pred HHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcH---HHHhh--------cCcE-EEeCCCHHHHHHH
Confidence 999999999999999863 46899999999999999998764 44444 2334 4445699999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 043397 551 LDRAFRHFIDKPEEWNRIVQKIMENDNSWNNAAGKYMEIYNS 592 (596)
Q Consensus 551 i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~iy~~ 592 (596)
|.+++... ++....+ .++ ..+.|||+..++++++..++
T Consensus 334 i~~~l~~~--~~~~~~~-~~~-~~~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 334 IEKALLED--GPARERR-RLR-LAAQNSWDARAAEMLEALQE 371 (373)
T ss_pred HHHHHhcC--CchHHHH-HHH-HHHHCCHHHHHHHHHHHHHh
Confidence 99987621 2222222 222 45689999999999976554
No 81
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.92 E-value=6.3e-24 Score=198.41 Aligned_cols=167 Identities=23% Similarity=0.375 Sum_probs=150.0
Q ss_pred HHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHH---HcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEE
Q 043397 391 KYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAE---ELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTR 467 (596)
Q Consensus 391 k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~---~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~ 467 (596)
++..++..+.. .++++|+|+||+.+.||++.+++|+..+. .+++.|+|+|+ +.+...+...++.+++..++.
T Consensus 2 ~~~~~~~~~~~--~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~---~~~~~~~~~~~~~~~~~~~i~ 76 (172)
T PF00534_consen 2 KDKLREKLKIP--DKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGD---GEYKKELKNLIEKLNLKENII 76 (172)
T ss_dssp HHHHHHHTTT---TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESH---CCHHHHHHHHHHHTTCGTTEE
T ss_pred hHHHHHHcCCC--CCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEcc---ccccccccccccccccccccc
Confidence 34455666654 78899999999999999999999999986 46899999998 888899999999999988999
Q ss_pred EEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHH
Q 043397 468 ILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSL 547 (596)
Q Consensus 468 ~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~l 547 (596)
|.|.++.+++..+|+.||++++||..|++|++++|||++|+|||+++.|+..|++.+ +.+|+++++.|++++
T Consensus 77 ~~~~~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~--------~~~g~~~~~~~~~~l 148 (172)
T PF00534_consen 77 FLGYVPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEIIND--------GVNGFLFDPNDIEEL 148 (172)
T ss_dssp EEESHSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGT--------TTSEEEESTTSHHHH
T ss_pred ccccccccccccccccceeccccccccccccccccccccccceeeccccCCceeecc--------ccceEEeCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999998 679999999999999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043397 548 NWALDRAFRHFIDKPEEWNRIVQKIME 574 (596)
Q Consensus 548 a~~i~~ll~~~~~~~~~~~~~~~~~~~ 574 (596)
+++|.++++ +++.++.|++++.+
T Consensus 149 ~~~i~~~l~----~~~~~~~l~~~~~~ 171 (172)
T PF00534_consen 149 ADAIEKLLN----DPELRQKLGKNARE 171 (172)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHC----CHHHHHHHHHHhcC
Confidence 999999999 88999999988764
No 82
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.92 E-value=1.9e-22 Score=212.92 Aligned_cols=214 Identities=13% Similarity=0.093 Sum_probs=163.7
Q ss_pred cccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCC
Q 043397 322 VYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLK 401 (596)
Q Consensus 322 ~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~ 401 (596)
+.+|.++++|+..++++.+.| .+.+++.+++++++.+.+.+.. .+..+++++|++
T Consensus 149 ~~~d~~~~~s~~~~~~l~~~g-------~~~~ki~v~g~~v~~~f~~~~~------------------~~~~~r~~~gl~ 203 (382)
T PLN02605 149 KGVTRCFCPSEEVAKRALKRG-------LEPSQIRVYGLPIRPSFARAVR------------------PKDELRRELGMD 203 (382)
T ss_pred CCCCEEEECCHHHHHHHHHcC-------CCHHHEEEECcccCHhhccCCC------------------CHHHHHHHcCCC
Confidence 348999999999998877655 4578999999999865433221 245678899997
Q ss_pred CCCCccEEEEEecccccCCHHHHHHHHHHHH------HcCCE-EEEEecCCCCc-chHHHHHHHHHcCCCCcEEEEeccC
Q 043397 402 SEGTVPLVVCITRLVAQKGLHLITHAIKRAE------ELGGQ-MILLGNSPVHW-VQKDFEDLANLHNKGTSTRILLMYS 473 (596)
Q Consensus 402 ~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~------~~~~~-lvIvG~~~~g~-~~~~l~~~~~~~~~~~~V~~~g~~~ 473 (596)
++.++|+++|+....|++..+++++..+. .++.+ ++|+|+ +. ..+.+++. ....+|+|+|+++
T Consensus 204 --~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~---~~~~~~~L~~~----~~~~~v~~~G~~~ 274 (382)
T PLN02605 204 --EDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGR---NKKLQSKLESR----DWKIPVKVRGFVT 274 (382)
T ss_pred --CCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECC---CHHHHHHHHhh----cccCCeEEEeccc
Confidence 77899999999999999999999997653 24565 567776 42 23444433 2234699999997
Q ss_pred HHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCC------CCccccccccCCCCCCCccceEEEeCCCHHHH
Q 043397 474 EELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKT------GGLADTVFDVDDPSNHEKANGFVFEGIDEGSL 547 (596)
Q Consensus 474 ~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~------gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~l 547 (596)
+ +.++|++||++|.++ .|++++|||+||+|+|+++. |+...++ + ++.|+.+ .|++++
T Consensus 275 ~--~~~l~~aaDv~V~~~----g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~-~--------~g~g~~~--~~~~~l 337 (382)
T PLN02605 275 N--MEEWMGACDCIITKA----GPGTIAEALIRGLPIILNGYIPGQEEGNVPYVV-D--------NGFGAFS--ESPKEI 337 (382)
T ss_pred c--HHHHHHhCCEEEECC----CcchHHHHHHcCCCEEEecCCCccchhhHHHHH-h--------CCceeec--CCHHHH
Confidence 5 999999999999864 58999999999999999984 4443344 3 3567655 699999
Q ss_pred HHHHHHHHHhccCC-HHHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 043397 548 NWALDRAFRHFIDK-PEEWNRIVQKIME--NDNSWNNAAGKYMEIY 590 (596)
Q Consensus 548 a~~i~~ll~~~~~~-~~~~~~~~~~~~~--~~fs~~~~~~~~~~iy 590 (596)
+++|.++++ + ++.+++|++++.+ ...+.+++++.+.++.
T Consensus 338 a~~i~~ll~----~~~~~~~~m~~~~~~~~~~~a~~~i~~~l~~~~ 379 (382)
T PLN02605 338 ARIVAEWFG----DKSDELEAMSENALKLARPEAVFDIVHDLHELV 379 (382)
T ss_pred HHHHHHHHc----CCHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Confidence 999999998 6 8899999887765 5677788887776553
No 83
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.90 E-value=1e-21 Score=208.33 Aligned_cols=315 Identities=14% Similarity=0.105 Sum_probs=224.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCc
Q 043397 213 NELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDG 292 (596)
Q Consensus 213 ~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~ 292 (596)
..+..|....+...+.+......-|+|.+|+++..++|..+... .+..++-+.+|...|... .+..+...
T Consensus 110 ~~w~~Y~~vN~~FA~~i~~~~~~~d~vWVhDYhL~llp~~LR~~-----~~~~~IgfFlHiPFPs~e----ifr~LP~r- 179 (487)
T TIGR02398 110 DDWQVFLKVNRAFAEAACLEAAEGATVWVHDYNLWLVPGYIRQL-----RPDLKIAFFHHTPFPSAD----VFNILPWR- 179 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCEEEEecchhhHHHHHHHHh-----CCCCeEEEEeeCCCCChH----HHhhCCch-
Confidence 44555655555544444433345589999999999999988765 578899999998876322 11111111
Q ss_pred hhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhh-----------------------
Q 043397 293 SIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLI----------------------- 349 (596)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~----------------------- 349 (596)
.-+-.++..+|.|-+.+..+++.++++ ....++
T Consensus 180 ----------------------~~ll~glL~aDliGFqt~~y~~~Fl~~--~~r~lg~~~~~~~~~~~~~~~~g~~~~~~ 235 (487)
T TIGR02398 180 ----------------------EQIIGSLLCCDYIGFHIPRYVENFVDA--ARGLMPLQTVSRQNVDPRFITVGTALGEE 235 (487)
T ss_pred ----------------------HHHHHHHhcCCeEEeCCHHHHHHHHHH--HHHHhCCcccccccccccccccccccccc
Confidence 112234566999999999999988742 111111
Q ss_pred ---------ccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCC
Q 043397 350 ---------THRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKG 420 (596)
Q Consensus 350 ---------~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KG 420 (596)
...-++.++|.|||++.|.+.... . ......+.++++++ ++++|++++|+++.||
T Consensus 236 ~~~~~v~~~gr~v~v~~~PiGID~~~f~~~~~~----------~-~~~~~~~~lr~~~~-----~~kiIl~VDRLDy~KG 299 (487)
T TIGR02398 236 RMTTALDTGNRVVKLGAHPVGTDPERIRSALAA----------A-SIREMMERIRSELA-----GVKLILSAERVDYTKG 299 (487)
T ss_pred ccccceeECCEEEEEEEEECEecHHHHHHHhcC----------c-hHHHHHHHHHHHcC-----CceEEEEecccccccC
Confidence 122347889999999888543211 0 11122445677764 5789999999999999
Q ss_pred HHHHHHHHHHHHH--c----CCEEEEEecCCCC------cchHHHHHHHHHc-------CCCCcEEEEeccCHHHHHHHH
Q 043397 421 LHLITHAIKRAEE--L----GGQMILLGNSPVH------WVQKDFEDLANLH-------NKGTSTRILLMYSEELSHMLY 481 (596)
Q Consensus 421 i~~ll~A~~~l~~--~----~~~lvIvG~~~~g------~~~~~l~~~~~~~-------~~~~~V~~~g~~~~~~l~~~~ 481 (596)
++..++|++++.+ | ++.|+++|....+ .+..++++++.+. +..+-+.+.+.++.+++..+|
T Consensus 300 I~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alY 379 (487)
T TIGR02398 300 ILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWF 379 (487)
T ss_pred HHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHH
Confidence 9999999999865 4 4689988873111 2445566666553 334446777999999999999
Q ss_pred HhCCEEEEcCCCCCCchHHHHHHhcCC----ceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 482 AAADIVLVPSIYEPCGLAQMIGMRYGA----VPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 482 a~aDi~l~PS~~E~~gl~~lEAma~G~----pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
+.||+++++|..||++++..|+++|+. ++|.|..+|..+.+ ..+++++|.|+++++++|.+++++
T Consensus 380 r~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaGaa~~l-----------~~AllVNP~d~~~~A~ai~~AL~m 448 (487)
T TIGR02398 380 AMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGAAVEL-----------KGALLTNPYDPVRMDETIYVALAM 448 (487)
T ss_pred HhCCEEEECccccccCcchhhHHhhhcCCCCCEEEeccccchhhc-----------CCCEEECCCCHHHHHHHHHHHHcC
Confidence 999999999999999999999999988 99999999988666 358999999999999999999996
Q ss_pred ccCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 043397 558 FIDKPEEWNRIVQKIME--NDNSWNNAAGKYMEIYN 591 (596)
Q Consensus 558 ~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~iy~ 591 (596)
. .+++++..++..+ ..++....++.+++-.+
T Consensus 449 ~---~~Er~~R~~~l~~~v~~~d~~~W~~~fl~~l~ 481 (487)
T TIGR02398 449 P---KAEQQARMREMFDAVNYYDVQRWADEFLAAVS 481 (487)
T ss_pred C---HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhh
Confidence 3 3332222222222 57899999988886443
No 84
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.90 E-value=8.4e-22 Score=208.46 Aligned_cols=218 Identities=10% Similarity=0.067 Sum_probs=159.7
Q ss_pred cccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCC
Q 043397 322 VYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLK 401 (596)
Q Consensus 322 ~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~ 401 (596)
+.+|.+++.|+..++.+.+.| .+.+++.++.|+++.....+. .+..++++++++
T Consensus 146 ~~~d~~~v~s~~~~~~l~~~g-------i~~~ki~v~GiPv~~~f~~~~-------------------~~~~~~~~~~l~ 199 (391)
T PRK13608 146 PYSTRYYVATKETKQDFIDVG-------IDPSTVKVTGIPIDNKFETPI-------------------DQKQWLIDNNLD 199 (391)
T ss_pred CCCCEEEECCHHHHHHHHHcC-------CCHHHEEEECeecChHhcccc-------------------cHHHHHHHcCCC
Confidence 348999999999999876554 456788888777774322111 133456778886
Q ss_pred CCCCcc-EEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHH
Q 043397 402 SEGTVP-LVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHML 480 (596)
Q Consensus 402 ~~~~~~-~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~ 480 (596)
++++ ++++.|++...||++.+++++.+. .++++++++++ . +. +..+++.+..+..++|.++|++++ +..+
T Consensus 200 --~~~~~ilv~~G~lg~~k~~~~li~~~~~~-~~~~~~vvv~G-~-~~--~l~~~l~~~~~~~~~v~~~G~~~~--~~~~ 270 (391)
T PRK13608 200 --PDKQTILMSAGAFGVSKGFDTMITDILAK-SANAQVVMICG-K-SK--ELKRSLTAKFKSNENVLILGYTKH--MNEW 270 (391)
T ss_pred --CCCCEEEEECCCcccchhHHHHHHHHHhc-CCCceEEEEcC-C-CH--HHHHHHHHHhccCCCeEEEeccch--HHHH
Confidence 4555 456789999999999999986332 25788876643 0 32 222333333444568999999865 9999
Q ss_pred HHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCC-CCcccc-----ccccCCCCCCCccceEEEeCCCHHHHHHHHHHH
Q 043397 481 YAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKT-GGLADT-----VFDVDDPSNHEKANGFVFEGIDEGSLNWALDRA 554 (596)
Q Consensus 481 ~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~-gg~~e~-----i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~l 554 (596)
|++||+++. .+.|++++|||++|+|+|+++. +| .|. +.+ .+.|+.. .|+++++++|.++
T Consensus 271 ~~~aDl~I~----k~gg~tl~EA~a~G~PvI~~~~~pg-qe~~N~~~~~~--------~G~g~~~--~~~~~l~~~i~~l 335 (391)
T PRK13608 271 MASSQLMIT----KPGGITISEGLARCIPMIFLNPAPG-QELENALYFEE--------KGFGKIA--DTPEEAIKIVASL 335 (391)
T ss_pred HHhhhEEEe----CCchHHHHHHHHhCCCEEECCCCCC-cchhHHHHHHh--------CCcEEEe--CCHHHHHHHHHHH
Confidence 999999996 4579999999999999999853 33 221 222 3455554 4899999999999
Q ss_pred HHhccCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHH
Q 043397 555 FRHFIDKPEEWNRIVQKIME--NDNSWNNAAGKYMEIYNSI 593 (596)
Q Consensus 555 l~~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~iy~~l 593 (596)
++ |++.+++|++++.+ ..++++++++.++++++..
T Consensus 336 l~----~~~~~~~m~~~~~~~~~~~s~~~i~~~l~~l~~~~ 372 (391)
T PRK13608 336 TN----GNEQLTNMISTMEQDKIKYATQTICRDLLDLIGHS 372 (391)
T ss_pred hc----CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhh
Confidence 98 99999999988776 6799999999999998764
No 85
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.90 E-value=1.5e-21 Score=202.61 Aligned_cols=397 Identities=17% Similarity=0.160 Sum_probs=251.2
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHh---------cCCeEEEEeccccchhhh---hhcccceeeeEEeecCC
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLS---------RGHTVDIMLPFYECIQKQ---EISDLALITTYNSYHDG 175 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~---------~Gh~V~vi~p~~~~~~~~---~~~~~~~~~~~~~~~~~ 175 (596)
.++++++.... ..||.++-..+.+..+.. .||+|.+++........+ .+.........++..-+
T Consensus 34 ~~~~~~~~~~~----~~gg~er~~v~~~~~l~s~~~~lg~~d~G~qV~~l~~h~~al~~~~~~~~~~~~l~~~~~i~vv~ 109 (495)
T KOG0853|consen 34 FEHVTFIHPDL----GIGGAERLVVDAAVHLLSGQDVLGLPDTGGQVVYLTSHEDALEMPLLLRCFAETLDGTPPILVVG 109 (495)
T ss_pred chhheeecccc----ccCchHHHhHHHHHHHHhcccccCCCCCCceEEEEehhhhhhcchHHHHHHHHHhcCCCceEEEE
Confidence 47888887554 569999999998999999 999999999665444110 00000000001111111
Q ss_pred ceEEEEE-----EeeeeCCeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHH
Q 043397 176 NWVATNA-----YHGVVSSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALP 250 (596)
Q Consensus 176 ~~~~~~~-----~~~~~~gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~ 250 (596)
.+.+... ......++.+++++. ...++.. .. .+-.+.. +..++..+++.... ||++|-+-|.+.+..
T Consensus 110 ~~lP~~~~~~~~~~~~~~~~~il~~~~-~~~~k~~--~~-~d~~i~d---~~~~~~~l~~~~~~-p~~~~~i~~~~h~~~ 181 (495)
T KOG0853|consen 110 DWLPRAMGQFLEQVAGCAYLRILRIPF-GILFKWA--EK-VDPIIED---FVSACVPLLKQLSG-PDVIIKIYFYCHFPD 181 (495)
T ss_pred eecCcccchhhhhhhccceeEEEEecc-chhhhhh--hh-hceeecc---hHHHHHHHHHHhcC-CcccceeEEeccchH
Confidence 1111111 112234556665552 0001000 00 0000011 22333334443333 787777766665555
Q ss_pred HHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEe
Q 043397 251 LLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTV 330 (596)
Q Consensus 251 ~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~v 330 (596)
.++.. ..+.+-+++-|...... ......+|.+++.
T Consensus 182 ~lla~------r~g~~~~l~~~~l~~~e---------------------------------------~e~~~~~~~~~~n 216 (495)
T KOG0853|consen 182 SLLAK------RLGVLKVLYRHALDKIE---------------------------------------EETTGLAWKILVN 216 (495)
T ss_pred HHhcc------ccCccceeehhhhhhhh---------------------------------------hhhhhccceEecc
Confidence 55432 23566666666443210 0112236677777
Q ss_pred ChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEE
Q 043397 331 SPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVV 410 (596)
Q Consensus 331 S~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il 410 (596)
|......+... .......++.+.+.++|.+.+.+.. |. .+...+...+...+.. .....+.
T Consensus 217 s~~~~~~f~~~-----~~~L~~~d~~~~y~ei~~s~~~~~~-------~~-----~~~~~~~~~r~~~~v~--~~d~~~~ 277 (495)
T KOG0853|consen 217 SYFTKRQFKAT-----FVSLSNSDITSTYPEIDGSWFTYGQ-------YE-----SHLELRLPVRLYRGVS--GIDRFFP 277 (495)
T ss_pred hhhhhhhhhhh-----hhhcCCCCcceeeccccchhccccc-------cc-----cchhcccccceeeeec--ccceEee
Confidence 76655554311 1122344588888899977665421 00 0111122222333332 4467788
Q ss_pred EEecccccCCHHHHHHHHHHHHH-------cCCEEEEEecC-CC------CcchHHHHHHHHHcCCC-CcEEEEeccCHH
Q 043397 411 CITRLVAQKGLHLITHAIKRAEE-------LGGQMILLGNS-PV------HWVQKDFEDLANLHNKG-TSTRILLMYSEE 475 (596)
Q Consensus 411 ~iGrl~~~KGi~~ll~A~~~l~~-------~~~~lvIvG~~-~~------g~~~~~l~~~~~~~~~~-~~V~~~g~~~~~ 475 (596)
.+-|+.|.||++++++++..+.. ...+++++|+. .+ -.+..++.++++++++. +.|.|+...++.
T Consensus 278 siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~~~~ 357 (495)
T KOG0853|consen 278 SINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPSTTRV 357 (495)
T ss_pred eeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecCCchH
Confidence 99999999999999999988854 24588999942 11 23567788899999885 456666888888
Q ss_pred HHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHH---HHHHHHH
Q 043397 476 LSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEG---SLNWALD 552 (596)
Q Consensus 476 ~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~---~la~~i~ 552 (596)
+...+++.+.+++.....|.||++.+|||+||+|||+++.||..|+|.+ +.+|+++++ +.+ .++++|.
T Consensus 358 ~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~--------~~tG~l~dp-~~e~~~~~a~~~~ 428 (495)
T KOG0853|consen 358 AKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEIVVH--------GVTGLLIDP-GQEAVAELADALL 428 (495)
T ss_pred HHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEEEEc--------CCcceeeCC-chHHHHHHHHHHH
Confidence 8888888888887777779999999999999999999999999999999 899999999 666 5999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHH
Q 043397 553 RAFRHFIDKPEEWNRIVQKIME---NDNSWNNAAGKYMEIYNSI 593 (596)
Q Consensus 553 ~ll~~~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~iy~~l 593 (596)
++.. ||+.|.+|+++..+ +.|||..+.+++.++..+.
T Consensus 429 kl~~----~p~l~~~~~~~G~~rV~e~fs~~~~~~ri~~~~~~~ 468 (495)
T KOG0853|consen 429 KLRR----DPELWARMGKNGLKRVKEMFSWQHYSERIASVLGKY 468 (495)
T ss_pred HHhc----CHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHhc
Confidence 9998 99999999977665 6799999999998877654
No 86
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.89 E-value=2.1e-21 Score=188.45 Aligned_cols=118 Identities=26% Similarity=0.327 Sum_probs=103.8
Q ss_pred EEecccccCCHHHHHHHHHHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEecc-CHHHHHHHHHhCCEE
Q 043397 411 CITRLVAQKGLHLITHAIKRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMY-SEELSHMLYAAADIV 487 (596)
Q Consensus 411 ~iGrl~~~KGi~~ll~A~~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~-~~~~l~~~~a~aDi~ 487 (596)
|+|++.+.||++.+++++..+.+ ++++++++|. +.........+...+..++|.++|.+ +.+++..+++.||++
T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~i~G~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~ 185 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAFALLKERGPDLKLVIAGD---GPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVF 185 (229)
T ss_pred EEEeecccCCHHHHHHHHHHHHHhCCCeEEEEEeC---CCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEE
Confidence 99999999999999999999976 4899999999 76666666656777778899999998 556666666779999
Q ss_pred EEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEE
Q 043397 488 LVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVF 539 (596)
Q Consensus 488 l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv 539 (596)
++||..|++|++++|||++|+|+|+++.++..|++.+ +.+|+++
T Consensus 186 l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~e~i~~--------~~~g~~~ 229 (229)
T cd01635 186 VLPSLREGFGLVVLEAMACGLPVIATDVGGPPEIVED--------GLTGLLV 229 (229)
T ss_pred EecccccCcChHHHHHHhCCCCEEEcCCCCcceEEEC--------CCceEEC
Confidence 9999999999999999999999999999999999887 6788864
No 87
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.85 E-value=4.8e-19 Score=186.15 Aligned_cols=216 Identities=14% Similarity=0.072 Sum_probs=153.4
Q ss_pred ccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCC
Q 043397 323 YSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKS 402 (596)
Q Consensus 323 ~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~ 402 (596)
.+|.++++|+..++.+++.| .+.++|++++||+....+.+... .....++++++.
T Consensus 141 ~ad~~~~~s~~~~~~l~~~G-------~~~~~I~vign~~~d~~~~~~~~----------------~~~~~~~~~~~~-- 195 (365)
T TIGR00236 141 IADLHFAPTEQAKDNLLREN-------VKADSIFVTGNTVIDALLTNVEI----------------AYSSPVLSEFGE-- 195 (365)
T ss_pred HHHhccCCCHHHHHHHHHcC-------CCcccEEEeCChHHHHHHHHHhh----------------ccchhHHHhcCC--
Confidence 48999999999999987654 55778999999963222211100 011234445542
Q ss_pred CCCccEEEEEe-cc-cccCCHHHHHHHHHHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHH
Q 043397 403 EGTVPLVVCIT-RL-VAQKGLHLITHAIKRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSH 478 (596)
Q Consensus 403 ~~~~~~il~iG-rl-~~~KGi~~ll~A~~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~ 478 (596)
+++++++.+ |. ...||++.+++|+.++.+ ++++++++|. +.. ...+.+.+.++..++|+|++.++..++.
T Consensus 196 --~~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~~~~~~~~vi~~~---~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 269 (365)
T TIGR00236 196 --DKRYILLTLHRRENVGEPLENIFKAIREIVEEFEDVQIVYPVH---LNP-VVREPLHKHLGDSKRVHLIEPLEYLDFL 269 (365)
T ss_pred --CCCEEEEecCchhhhhhHHHHHHHHHHHHHHHCCCCEEEEECC---CCh-HHHHHHHHHhCCCCCEEEECCCChHHHH
Confidence 234555555 54 345899999999999864 5788888865 211 1122234445556789999999999999
Q ss_pred HHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEe-CCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 479 MLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVR-KTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 479 ~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s-~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
.+++.||+++.+| |..++|||++|+|+|++ +.|+.++++.+ +.++++. .|+++++++|.++++
T Consensus 270 ~~l~~ad~vv~~S-----g~~~~EA~a~g~PvI~~~~~~~~~e~~~~---------g~~~lv~-~d~~~i~~ai~~ll~- 333 (365)
T TIGR00236 270 NLAANSHLILTDS-----GGVQEEAPSLGKPVLVLRDTTERPETVEA---------GTNKLVG-TDKENITKAAKRLLT- 333 (365)
T ss_pred HHHHhCCEEEECC-----hhHHHHHHHcCCCEEECCCCCCChHHHhc---------CceEEeC-CCHHHHHHHHHHHHh-
Confidence 9999999999887 66789999999999995 77888888876 4566664 699999999999998
Q ss_pred ccCCHHHHHHHHHHHHH--hcCCHHHHHHHHHH
Q 043397 558 FIDKPEEWNRIVQKIME--NDNSWNNAAGKYME 588 (596)
Q Consensus 558 ~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~ 588 (596)
+++.+++++++.-. ...+++++++.+.+
T Consensus 334 ---~~~~~~~~~~~~~~~g~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 334 ---DPDEYKKMSNASNPYGDGEASERIVEELLN 363 (365)
T ss_pred ---ChHHHHHhhhcCCCCcCchHHHHHHHHHHh
Confidence 88888888765421 34556666655554
No 88
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.85 E-value=3.8e-19 Score=184.14 Aligned_cols=235 Identities=14% Similarity=0.057 Sum_probs=160.4
Q ss_pred CCC-cEEEEcCCccc--hHHH-HHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCC
Q 043397 234 VQP-DIIHVHEWQIG--ALPL-LYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGH 309 (596)
Q Consensus 234 ~~p-DVIh~~~~~~~--~~~~-~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (596)
.++ |+||.+++... .... ++..+ +..++|+|+++|+.++... . . ..
T Consensus 62 ~~~~Dvv~~~~P~~~~~~~~~~~~~~~----k~~~~k~i~~ihD~~~~~~-~-----~---~~----------------- 111 (333)
T PRK09814 62 LKPGDIVIFQFPTWNGFEFDRLFVDKL----KKKQVKIIILIHDIEPLRF-D-----S---NY----------------- 111 (333)
T ss_pred CCCCCEEEEECCCCchHHHHHHHHHHH----HHcCCEEEEEECCcHHHhc-c-----c---cc-----------------
Confidence 456 99999874321 1112 11111 1237999999999775210 0 0 00
Q ss_pred CcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhh
Q 043397 310 NPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKI 389 (596)
Q Consensus 310 ~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~ 389 (596)
....+.+..++.+|.|+++|+.+++.+.+.| .+..++.++++..+.....+.
T Consensus 112 --~~~~~~~~~~~~aD~iI~~S~~~~~~l~~~g-------~~~~~i~~~~~~~~~~~~~~~------------------- 163 (333)
T PRK09814 112 --YLMKEEIDMLNLADVLIVHSKKMKDRLVEEG-------LTTDKIIVQGIFDYLNDIELV------------------- 163 (333)
T ss_pred --hhhHHHHHHHHhCCEEEECCHHHHHHHHHcC-------CCcCceEeccccccccccccc-------------------
Confidence 0022345567789999999999999987655 234577766655432111000
Q ss_pred hHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEE
Q 043397 390 CKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRIL 469 (596)
Q Consensus 390 ~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~ 469 (596)
. . ....+.|+|+|++...+++. + ..++++|+|+|+ |+..+ ...++|.|+
T Consensus 164 ------~---~--~~~~~~i~yaG~l~k~~~l~---~-----~~~~~~l~i~G~---g~~~~---------~~~~~V~f~ 212 (333)
T PRK09814 164 ------K---T--PSFQKKINFAGNLEKSPFLK---N-----WSQGIKLTVFGP---NPEDL---------ENSANISYK 212 (333)
T ss_pred ------c---c--ccCCceEEEecChhhchHHH---h-----cCCCCeEEEECC---Ccccc---------ccCCCeEEe
Confidence 0 0 03456899999998443211 1 235789999999 76543 235689999
Q ss_pred eccCHHHHHHHHHhCCEEEEcCCC-----------CCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEE
Q 043397 470 LMYSEELSHMLYAAADIVLVPSIY-----------EPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFV 538 (596)
Q Consensus 470 g~~~~~~l~~~~a~aDi~l~PS~~-----------E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~l 538 (596)
|+++.+++..+|+. |+.+++... -.+|.++.|+||||+|||+++.+++.++|++ +.+|++
T Consensus 213 G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~~~~~V~~--------~~~G~~ 283 (333)
T PRK09814 213 GWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAAIADFIVE--------NGLGFV 283 (333)
T ss_pred cCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCccHHHHHHh--------CCceEE
Confidence 99999999999998 776665321 3678899999999999999999999999998 789999
Q ss_pred EeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043397 539 FEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME 574 (596)
Q Consensus 539 v~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~ 574 (596)
++ +.++++++|.++ +++.+.+|++++.+
T Consensus 284 v~--~~~el~~~l~~~------~~~~~~~m~~n~~~ 311 (333)
T PRK09814 284 VD--SLEELPEIIDNI------TEEEYQEMVENVKK 311 (333)
T ss_pred eC--CHHHHHHHHHhc------CHHHHHHHHHHHHH
Confidence 97 678899999875 34667788876654
No 89
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.84 E-value=7.6e-19 Score=197.58 Aligned_cols=317 Identities=14% Similarity=0.117 Sum_probs=216.1
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCch
Q 043397 214 ELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGS 293 (596)
Q Consensus 214 ~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~ 293 (596)
.+..|....+.....+......-|+|.+|++|..++|..+... .+..++-|.+|...|... .+..+...
T Consensus 210 ~w~~Y~~vN~~FA~~i~~~~~~gD~VWVHDYHL~LlP~~LR~~-----~p~~~IGfFlHiPFPs~E----ifr~LP~r-- 278 (934)
T PLN03064 210 QFAAYKKANQMFADVVNEHYEEGDVVWCHDYHLMFLPKCLKEY-----NSNMKVGWFLHTPFPSSE----IHRTLPSR-- 278 (934)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEecchhhHHHHHHHHh-----CCCCcEEEEecCCCCChH----HHhhCCcH--
Confidence 3445554444444444333344589999999999999998765 678999999998876322 11111111
Q ss_pred hhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhc-----------cCCcEEEeeCCC
Q 043397 294 IYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLIT-----------HRDKYFGILNGI 362 (596)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~-----------~~~ki~vI~nGi 362 (596)
.-+-.++..+|.|-+.+..+++.++.. ....++. ...++.+.|-||
T Consensus 279 ---------------------~elL~glL~aDlIGFqT~~y~rhFl~~--c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGI 335 (934)
T PLN03064 279 ---------------------SELLRSVLAADLVGFHTYDYARHFVSA--CTRILGLEGTPEGVEDQGRLTRVAAFPIGI 335 (934)
T ss_pred ---------------------HHHHHHHhcCCeEEeCCHHHHHHHHHH--HHHHhCccccCCeEEECCEEEEEEEEeCEE
Confidence 112335667999999999999998742 1122211 122466779999
Q ss_pred CCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHH--cCC--EE
Q 043397 363 DTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--LGG--QM 438 (596)
Q Consensus 363 d~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~~~--~l 438 (596)
|++.|...... . ......+.+++++ .++.+|++++|+++.||+...++|++++.+ |.+ ++
T Consensus 336 D~~~f~~~~~~----------~-~v~~~~~~lr~~~-----~g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kV 399 (934)
T PLN03064 336 DSDRFIRALET----------P-QVQQHIKELKERF-----AGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKV 399 (934)
T ss_pred cHHHHHHHhcC----------h-hHHHHHHHHHHHh-----CCceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCE
Confidence 98877532110 0 1111234555555 356799999999999999999999999765 433 34
Q ss_pred EEE--e--cCCCCcchHH----HHHHHH----HcCCCCc--EEEE-eccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHH
Q 043397 439 ILL--G--NSPVHWVQKD----FEDLAN----LHNKGTS--TRIL-LMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIG 503 (596)
Q Consensus 439 vIv--G--~~~~g~~~~~----l~~~~~----~~~~~~~--V~~~-g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEA 503 (596)
+++ . ...+++..+. +.+++. ++|..+. |+++ ..++.+++..+|+.||++++||..||++++.+||
T Consensus 400 VLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Ey 479 (934)
T PLN03064 400 VLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEF 479 (934)
T ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHH
Confidence 444 2 2112443333 333333 2332211 5555 4589999999999999999999999999999999
Q ss_pred HhcCC----ceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--hcC
Q 043397 504 MRYGA----VPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME--NDN 577 (596)
Q Consensus 504 ma~G~----pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~--~~f 577 (596)
|+|+. ++|.|...|..+.+. ..+++++|.|.++++++|.+++.+ ++++++++.++..+ ..+
T Consensus 480 va~~~~~~GvLILSEfaGaa~~L~----------~~AllVNP~D~~~vA~AI~~AL~M---~~~Er~~r~~~~~~~V~~~ 546 (934)
T PLN03064 480 VACQDSKKGVLILSEFAGAAQSLG----------AGAILVNPWNITEVAASIAQALNM---PEEEREKRHRHNFMHVTTH 546 (934)
T ss_pred HHhhcCCCCCeEEeCCCchHHHhC----------CceEEECCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhhcccC
Confidence 99943 566699999888873 369999999999999999999986 56666666555544 689
Q ss_pred CHHHHHHHHHHHHHHH
Q 043397 578 SWNNAAGKYMEIYNSI 593 (596)
Q Consensus 578 s~~~~~~~~~~iy~~l 593 (596)
|+...++.+++-.++.
T Consensus 547 d~~~Wa~~fl~~L~~~ 562 (934)
T PLN03064 547 TAQEWAETFVSELNDT 562 (934)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999987655443
No 90
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.84 E-value=6.4e-19 Score=185.00 Aligned_cols=215 Identities=17% Similarity=0.106 Sum_probs=154.5
Q ss_pred cccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCC-CCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCC
Q 043397 322 VYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGI-DTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGL 400 (596)
Q Consensus 322 ~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGi-d~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l 400 (596)
+.+|.++++|+..++.+...| .+.+++.+++|++ |...+.+... .....++.+++
T Consensus 140 ~~ad~~~~~s~~~~~~l~~~G-------~~~~kI~vign~v~d~~~~~~~~~-----------------~~~~~~~~~~~ 195 (363)
T cd03786 140 KLSDLHFAPTEEARRNLLQEG-------EPPERIFVVGNTMIDALLRLLELA-----------------KKELILELLGL 195 (363)
T ss_pred HHhhhccCCCHHHHHHHHHcC-------CCcccEEEECchHHHHHHHHHHhh-----------------ccchhhhhccc
Confidence 458999999999999876655 5678899999985 5322211100 00112345666
Q ss_pred CCCCCccEEEEEecccc---cCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCC-CCcEEEEeccCHHH
Q 043397 401 KSEGTVPLVVCITRLVA---QKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNK-GTSTRILLMYSEEL 476 (596)
Q Consensus 401 ~~~~~~~~il~iGrl~~---~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~-~~~V~~~g~~~~~~ 476 (596)
+ ++..++++.||... .||++.+++|++++.+.++.+++.|+ +...+.+++.+++++. .++|.|.|....++
T Consensus 196 ~--~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~---~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~ 270 (363)
T cd03786 196 L--PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNH---PRTRPRIREAGLEFLGHHPNVLLISPLGYLY 270 (363)
T ss_pred C--CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECC---CChHHHHHHHHHhhccCCCCEEEECCcCHHH
Confidence 4 45567778999864 79999999999988654567666666 7777888888888776 67899999888889
Q ss_pred HHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCC-CCccccccccCCCCCCCccceEEEeCC-CHHHHHHHHHHH
Q 043397 477 SHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKT-GGLADTVFDVDDPSNHEKANGFVFEGI-DEGSLNWALDRA 554 (596)
Q Consensus 477 l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~-gg~~e~i~~~~~~~~~~~~~G~lv~~~-d~~~la~~i~~l 554 (596)
+..+|++||++|.+|- | ++.|||++|+|+|+++. +..++.+.+ |+.+... |+++++++|.++
T Consensus 271 ~~~l~~~ad~~v~~Sg----g-i~~Ea~~~g~PvI~~~~~~~~~~~~~~-----------g~~~~~~~~~~~i~~~i~~l 334 (363)
T cd03786 271 FLLLLKNADLVLTDSG----G-IQEEASFLGVPVLNLRDRTERPETVES-----------GTNVLVGTDPEAILAAIEKL 334 (363)
T ss_pred HHHHHHcCcEEEEcCc----c-HHhhhhhcCCCEEeeCCCCccchhhhe-----------eeEEecCCCHHHHHHHHHHH
Confidence 9999999999999984 4 47999999999999864 335566543 4444333 699999999999
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043397 555 FRHFIDKPEEWNRIVQKIMENDNSWNNAAGKYMEI 589 (596)
Q Consensus 555 l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~i 589 (596)
++ ++..+..|. ...|.-...+++..++
T Consensus 335 l~----~~~~~~~~~----~~~~~~~~a~~~I~~~ 361 (363)
T cd03786 335 LS----DEFAYSLMS----INPYGDGNASERIVEI 361 (363)
T ss_pred hc----CchhhhcCC----CCCCCCCHHHHHHHHH
Confidence 98 777766654 2344444455555443
No 91
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.82 E-value=2.6e-17 Score=159.53 Aligned_cols=298 Identities=16% Similarity=0.103 Sum_probs=208.2
Q ss_pred CCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCC--CchhhhhhhhhccccccCCC
Q 043397 233 GVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGL--DGSIYASVEKAIDDRTIGHN 310 (596)
Q Consensus 233 ~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 310 (596)
+..|||..-.-..+...|.... +.++|++..+|-..- .+. .+.+..- ...+..+ .+...
T Consensus 148 r~~Pdi~IDtMGY~fs~p~~r~-------l~~~~V~aYvHYP~i--S~D--ML~~l~qrq~s~~l~~-~KlaY------- 208 (465)
T KOG1387|consen 148 RFPPDIFIDTMGYPFSYPIFRR-------LRRIPVVAYVHYPTI--STD--MLKKLFQRQKSGILVW-GKLAY------- 208 (465)
T ss_pred hCCchheEecCCCcchhHHHHH-------HccCceEEEEecccc--cHH--HHHHHHhhhhcchhhh-HHHHH-------
Confidence 4789987654333444554422 468999999994432 111 1110000 0001111 00000
Q ss_pred cc-cchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhh
Q 043397 311 PE-RLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKI 389 (596)
Q Consensus 311 ~~-~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~ 389 (596)
++ ...+.+.+-..+|.+++.|.+..+.+.+- | ...++++|+.+-+++.+.
T Consensus 209 ~rlFa~lY~~~G~~ad~vm~NssWT~nHI~qi-W-------~~~~~~iVyPPC~~e~lk--------------------- 259 (465)
T KOG1387|consen 209 WRLFALLYQSAGSKADIVMTNSSWTNNHIKQI-W-------QSNTCSIVYPPCSTEDLK--------------------- 259 (465)
T ss_pred HHHHHHHHHhccccceEEEecchhhHHHHHHH-h-------hccceeEEcCCCCHHHHH---------------------
Confidence 01 11334455567899999998777776531 1 136778887766654321
Q ss_pred hHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHH--HHH------cCCEEEEEecCCCCcch---HHHHHHHH
Q 043397 390 CKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKR--AEE------LGGQMILLGNSPVHWVQ---KDFEDLAN 458 (596)
Q Consensus 390 ~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~--l~~------~~~~lvIvG~~~~g~~~---~~l~~~~~ 458 (596)
+..+. .+.+.+.++++|.+.|+|+.. +++.++. .++ .+++|+|+|++.+.+.. ..++.+++
T Consensus 260 ------s~~~t-e~~r~~~ll~l~Q~RPEKnH~-~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~ 331 (465)
T KOG1387|consen 260 ------SKFGT-EGERENQLLSLAQFRPEKNHK-ILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAE 331 (465)
T ss_pred ------HHhcc-cCCcceEEEEEeecCcccccH-HHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHH
Confidence 11111 125678999999999999999 5554433 332 36799999997554444 45667888
Q ss_pred HcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC-ccccccccCCCCCCCccceE
Q 043397 459 LHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG-LADTVFDVDDPSNHEKANGF 537 (596)
Q Consensus 459 ~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg-~~e~i~~~~~~~~~~~~~G~ 537 (596)
++.+..+|.|.-.+|.+++..+|..|.+.+.....|-||+.+.|+||+|+.+|+.+.|| .-|+|.+.+. ..+||
T Consensus 332 ~L~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G-----~~tGF 406 (465)
T KOG1387|consen 332 ELKIPKHVQFEKNVPYEKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDG-----ETTGF 406 (465)
T ss_pred hcCCccceEEEecCCHHHHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCCCCceeeeeccCC-----cccee
Confidence 99999999999999999999999999999999999999999999999999999999888 7788887654 57999
Q ss_pred EEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHhcC
Q 043397 538 VFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME--NDNSWNNAAGKYMEIYNSIRVG 596 (596)
Q Consensus 538 lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~iy~~l~~~ 596 (596)
+.. +.++.++++.+++.+ +++.+..|++++.. .+|+-.+.-+.+...+.+++.+
T Consensus 407 la~--t~~EYaE~iLkIv~~---~~~~r~~~r~~AR~s~~RFsE~~F~kd~~~~i~kll~e 462 (465)
T KOG1387|consen 407 LAP--TDEEYAEAILKIVKL---NYDERNMMRRNARKSLARFGELKFDKDWENPICKLLEE 462 (465)
T ss_pred ecC--ChHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHhhHHHHHHhHhHHHHHhhcc
Confidence 995 788999999999985 77776666655544 7899999999999888887753
No 92
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.4e-17 Score=158.94 Aligned_cols=385 Identities=16% Similarity=0.119 Sum_probs=241.9
Q ss_pred HHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCCeEEEEEcCCccccCCCc
Q 043397 127 LGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSSIPVIFIEPSNQFFKGKN 206 (596)
Q Consensus 127 ~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~ 206 (596)
-+.+...-|..|++.|++|+++.-..+ .+-+++-. -..|.++.+++....-.+.+
T Consensus 25 RSPRMqYHA~Sla~~gf~VdliGy~~s-~p~e~l~~------------------------hprI~ih~m~~l~~~~~~p~ 79 (444)
T KOG2941|consen 25 RSPRMQYHALSLAKLGFQVDLIGYVES-IPLEELLN------------------------HPRIRIHGMPNLPFLQGGPR 79 (444)
T ss_pred CChHHHHHHHHHHHcCCeEEEEEecCC-CChHHHhc------------------------CCceEEEeCCCCcccCCCch
Confidence 355667889999999999999973322 11221110 14566666663221111111
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhh
Q 043397 207 VYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLS 286 (596)
Q Consensus 207 ~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~ 286 (596)
+.-.. .+.+..|.--++.+.. ...+|+|.+.++++-..- .....+.. +.+.+++...||..+. ..-.....
T Consensus 80 ~~~l~---lKvf~Qfl~Ll~aL~~--~~~~~~ilvQNPP~iPtl-iv~~~~~~--l~~~KfiIDWHNy~Ys-l~l~~~~g 150 (444)
T KOG2941|consen 80 VLFLP---LKVFWQFLSLLWALFV--LRPPDIILVQNPPSIPTL-IVCVLYSI--LTGAKFIIDWHNYGYS-LQLKLKLG 150 (444)
T ss_pred hhhhH---HHHHHHHHHHHHHHHh--ccCCcEEEEeCCCCCchH-HHHHHHHH--HhcceEEEEehhhHHH-HHHHhhcC
Confidence 11100 1111111111111111 378999999876542111 11122222 5799999999998763 10000011
Q ss_pred hcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHh-hcchhhhhhhccCCcEEEeeCC----
Q 043397 287 KCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETL-CSGWLASVLITHRDKYFGILNG---- 361 (596)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~-~~g~l~~~~~~~~~ki~vI~nG---- 361 (596)
.....-.+.++.++.+ -+.||.-+|||+.+++++. .+| . .+..+++.-
T Consensus 151 ~~h~lV~l~~~~E~~f------------------gk~a~~nLcVT~AMr~dL~qnWg-------i--~ra~v~YDrPps~ 203 (444)
T KOG2941|consen 151 FQHPLVRLVRWLEKYF------------------GKLADYNLCVTKAMREDLIQNWG-------I--NRAKVLYDRPPSK 203 (444)
T ss_pred CCCchHHHHHHHHHHh------------------hcccccchhhHHHHHHHHHHhcC-------C--ceeEEEecCCCCC
Confidence 1111222333333333 3458999999999998876 333 1 234444321
Q ss_pred -CCCC----CcCCCCcCCCccccCCCCchhhhhhHHHHHhhcC--C--CCCCCccEEEEEecccccCCHHHHHHHHHHHH
Q 043397 362 -IDTV----IWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLG--L--KSEGTVPLVVCITRLVAQKGLHLITHAIKRAE 432 (596)
Q Consensus 362 -id~~----~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~--l--~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~ 432 (596)
.+.+ .|.+-...+ ..|.+...+.++.....+-++.. . .......+++......|..++..|++|+....
T Consensus 204 ~~~l~~~H~lf~~l~~d~--~~f~ar~~q~~~~~~taf~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~ 281 (444)
T KOG2941|consen 204 PTPLDEQHELFMKLAGDH--SPFRAREPQDKALERTAFTKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEALVIYE 281 (444)
T ss_pred CCchhHHHHHHhhhcccc--chhhhcccccchhhhhhHhhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhh
Confidence 1111 122211111 12334444455555444444443 1 00133456778888999999999999998442
Q ss_pred H---------cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEE-eccCHHHHHHHHHhCCEEEEc--CC-CCCCchH
Q 043397 433 E---------LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRIL-LMYSEELSHMLYAAADIVLVP--SI-YEPCGLA 499 (596)
Q Consensus 433 ~---------~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~-g~~~~~~l~~~~a~aDi~l~P--S~-~E~~gl~ 499 (596)
+ |.+-++|-|+ |+..+.+.+.+++++.. +|.+. .++..|+.+.+++.||+.|+- |. --..||+
T Consensus 282 ~~~~~~~~~lP~llciITGK---GPlkE~Y~~~I~~~~~~-~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMK 357 (444)
T KOG2941|consen 282 EQLYDKTHNLPSLLCIITGK---GPLKEKYSQEIHEKNLQ-HVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMK 357 (444)
T ss_pred hhhhhccCCCCcEEEEEcCC---CchhHHHHHHHHHhccc-ceeeeecccccccchhHhhccccceEeeecCcccCcchh
Confidence 2 3456678888 99999999999998875 66666 788999999999999998754 33 2468999
Q ss_pred HHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-hcCC
Q 043397 500 QMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME-NDNS 578 (596)
Q Consensus 500 ~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~-~~fs 578 (596)
++.-..||+||++-+...+.|+|.+ ++||++|+ |.++|++.+..+++.+.++...+.++.++..+ +...
T Consensus 358 VVDMFGcglPvcA~~fkcl~ELVkh--------~eNGlvF~--Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~~e~R 427 (444)
T KOG2941|consen 358 VVDMFGCGLPVCAVNFKCLDELVKH--------GENGLVFE--DSEELAEQLQMLFKNFPDNADELNQLKKNLREEQELR 427 (444)
T ss_pred HHHhhcCCCceeeecchhHHHHHhc--------CCCceEec--cHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhh
Confidence 9999999999999999999999999 89999998 89999999999999999899999999988887 6677
Q ss_pred HHHHHHHHHH
Q 043397 579 WNNAAGKYME 588 (596)
Q Consensus 579 ~~~~~~~~~~ 588 (596)
|+..-++...
T Consensus 428 W~~~W~~~~~ 437 (444)
T KOG2941|consen 428 WDESWERTAL 437 (444)
T ss_pred HHHHHHHhhh
Confidence 7766555443
No 93
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.81 E-value=6.6e-18 Score=178.52 Aligned_cols=198 Identities=14% Similarity=-0.005 Sum_probs=139.2
Q ss_pred ccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCC
Q 043397 321 IVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGL 400 (596)
Q Consensus 321 ~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l 400 (596)
.+.+|.++++|+...+.+...| .++.++.|++........ .+..+++++++
T Consensus 132 ~~~~d~i~~~~~~~~~~~~~~g----------~~~~~~G~p~~~~~~~~~-------------------~~~~~~~~l~~ 182 (380)
T PRK00025 132 AKATDHVLALFPFEAAFYDKLG----------VPVTFVGHPLADAIPLLP-------------------DRAAARARLGL 182 (380)
T ss_pred HHHHhhheeCCccCHHHHHhcC----------CCeEEECcCHHHhccccc-------------------ChHHHHHHcCC
Confidence 4458999999988777754332 235565555542211000 13456677887
Q ss_pred CCCCCccEE-EEEe-ccccc-CCHHHHHHHHHHHHH--cCCEEEEEecCCCCcchHHHHHHHHHc-CCCCcEEEEeccCH
Q 043397 401 KSEGTVPLV-VCIT-RLVAQ-KGLHLITHAIKRAEE--LGGQMILLGNSPVHWVQKDFEDLANLH-NKGTSTRILLMYSE 474 (596)
Q Consensus 401 ~~~~~~~~i-l~iG-rl~~~-KGi~~ll~A~~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~-~~~~~V~~~g~~~~ 474 (596)
+ ++.+++ ++.| |.... ++++.++++++.+.+ ++++++++|.. +...+.+++..+++ ++. +.+..
T Consensus 183 ~--~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~--~~~~~~~~~~~~~~~~~~--v~~~~---- 252 (380)
T PRK00025 183 D--PDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVN--PKRREQIEEALAEYAGLE--VTLLD---- 252 (380)
T ss_pred C--CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCC--hhhHHHHHHHHhhcCCCC--eEEEc----
Confidence 5 556654 4555 44444 457899999998865 47899998751 45567777777766 443 55543
Q ss_pred HHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEe-----------------CCCCccccccccCCCCCCCccceE
Q 043397 475 ELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVR-----------------KTGGLADTVFDVDDPSNHEKANGF 537 (596)
Q Consensus 475 ~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s-----------------~~gg~~e~i~~~~~~~~~~~~~G~ 537 (596)
+++..+|+.||+++++| |.+.+|||++|+|+|+. +.+++++++.+.. ...++
T Consensus 253 ~~~~~~~~~aDl~v~~s-----G~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~ 321 (380)
T PRK00025 253 GQKREAMAAADAALAAS-----GTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRE------LVPEL 321 (380)
T ss_pred ccHHHHHHhCCEEEECc-----cHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCC------cchhh
Confidence 35899999999999987 88889999999999986 4566677776511 24667
Q ss_pred EEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 043397 538 VFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKI 572 (596)
Q Consensus 538 lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~ 572 (596)
+.+..|++++++++.++++ |++.+++|++++
T Consensus 322 ~~~~~~~~~l~~~i~~ll~----~~~~~~~~~~~~ 352 (380)
T PRK00025 322 LQEEATPEKLARALLPLLA----DGARRQALLEGF 352 (380)
T ss_pred cCCCCCHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 7777899999999999998 999999998775
No 94
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.81 E-value=9.6e-18 Score=172.23 Aligned_cols=222 Identities=26% Similarity=0.391 Sum_probs=177.3
Q ss_pred ccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCC
Q 043397 323 YSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKS 402 (596)
Q Consensus 323 ~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~ 402 (596)
..+.+++.+....+.+.... ...++.+++|+++...+.+. ..++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~- 194 (381)
T COG0438 150 LADRVIAVSPALKELLEALG--------VPNKIVVIPNGIDTEKFAPA--------------------------RIGLL- 194 (381)
T ss_pred cccEEEECCHHHHHHHHHhC--------CCCCceEecCCcCHHHcCcc--------------------------ccCCC-
Confidence 46788888876644433221 13378899999998766542 01111
Q ss_pred CCC--ccEEEEEecccccCCHHHHHHHHHHHHHc--CCEEEEEecCCCCcc-hHHHHHHHHHcCCCCcEEEEeccCHHHH
Q 043397 403 EGT--VPLVVCITRLVAQKGLHLITHAIKRAEEL--GGQMILLGNSPVHWV-QKDFEDLANLHNKGTSTRILLMYSEELS 477 (596)
Q Consensus 403 ~~~--~~~il~iGrl~~~KGi~~ll~A~~~l~~~--~~~lvIvG~~~~g~~-~~~l~~~~~~~~~~~~V~~~g~~~~~~l 477 (596)
.. ...++++||+.+.||++.+++++..+.+. +..++++|. +.. .+.+.....+++..++|.|.|.++++++
T Consensus 195 -~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 270 (381)
T COG0438 195 -PEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGD---GPERREELEKLAKKLGLEDNVKFLGYVPDEEL 270 (381)
T ss_pred -cccCceEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcC---CCccHHHHHHHHHHhCCCCcEEEecccCHHHH
Confidence 22 37899999999999999999999999763 379999999 555 3666667888777788999999998888
Q ss_pred HHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 478 HMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 478 ~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
..+++.||++++||..|++|++++|||++|+|+|+++.++..+++.+ +.+|+++.+.|.+++++++..+++
T Consensus 271 ~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~~~~e~~~~--------~~~g~~~~~~~~~~~~~~i~~~~~- 341 (381)
T COG0438 271 AELLASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVGGIPEVVED--------GETGLLVPPGDVEELADALEQLLE- 341 (381)
T ss_pred HHHHHhCCEEEeccccccchHHHHHHHhcCCcEEECCCCChHHHhcC--------CCceEecCCCCHHHHHHHHHHHhc-
Confidence 88999999999999999999999999999999999999999999987 446887777679999999999998
Q ss_pred ccCCHHHHHHHHHH---HHHhcCCHHHHHHHHHHHHHHHhc
Q 043397 558 FIDKPEEWNRIVQK---IMENDNSWNNAAGKYMEIYNSIRV 595 (596)
Q Consensus 558 ~~~~~~~~~~~~~~---~~~~~fs~~~~~~~~~~iy~~l~~ 595 (596)
+++.++.+.+. .....|+|+.+++++.++|.....
T Consensus 342 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (381)
T COG0438 342 ---DPELREELGEAARERVEEEFSWERIAEQLLELYEELLA 379 (381)
T ss_pred ---CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 66666666642 222689999999999999987753
No 95
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.79 E-value=2.1e-17 Score=173.87 Aligned_cols=445 Identities=16% Similarity=0.214 Sum_probs=228.7
Q ss_pred EeecccccccccCHHHHHhHHHHHHHhc-CCeEEEEeccccchhhhhhcccceeee-E-----EeecCCceEEEEEEeee
Q 043397 114 ITAEMAPIAKVGGLGDVVTGLARACLSR-GHTVDIMLPFYECIQKQEISDLALITT-Y-----NSYHDGNWVATNAYHGV 186 (596)
Q Consensus 114 is~~~~P~~~~GG~~~~~~~La~aL~~~-Gh~V~vi~p~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~ 186 (596)
++++-.. ++||+-+++..-|..+.+. |-+..++.|..+.....+.+....... + .....+ +.+.+-+..
T Consensus 2 ~sWEVcN--KVGGIYTVi~tKA~~~~~e~gd~y~lIGP~~~~~~~~e~e~~e~~~~~l~~~~~~~~~~G--l~v~~GRWl 77 (633)
T PF05693_consen 2 VSWEVCN--KVGGIYTVISTKAPTMVEEFGDNYILIGPYNEQNARTEVEEIEPDNPLLKDALESMREEG--LKVRYGRWL 77 (633)
T ss_dssp EETTTTS---SSSHHHHHHHHHHHHHHHHGGGEEEEEE--TTTHHHHEEE--SSSGGHHHHHHHHHHTT---EEEEEEES
T ss_pred chhhhcc--ccCCeehhhhccHHHHHHHHCCeEEEECCCCCcccCCCCCcCCCCCHHHHHHHHHHHhCC--CeEEEecee
Confidence 3455555 8999999999998888874 889999998765432222221111000 0 011122 233333445
Q ss_pred eCCeEEEEEcCCcccc-CCCcccCC-----------ChhhHHHHHHHHHHHHHHHH----hhCCCC-cEEEEcCCccchH
Q 043397 187 VSSIPVIFIEPSNQFF-KGKNVYGG-----------SYNELEAYLFFSRACLEWMQ----VTGVQP-DIIHVHEWQIGAL 249 (596)
Q Consensus 187 ~~gv~v~~~~~~~~~~-~~~~~y~~-----------~~~~~~~~~~f~~~~~~~l~----~~~~~p-DVIh~~~~~~~~~ 249 (596)
+.|.|.+.+-.-...+ ....+++. .+.+.....+|.-++..++. ....++ -|.|+|+|+++..
T Consensus 78 I~G~P~vIL~D~~s~~~~ldeik~~lW~~~gIdS~~~~~dynea~~Fgyava~fi~~f~~~~~~~~~ViaHfHEWmaG~g 157 (633)
T PF05693_consen 78 IPGRPIVILFDFGSFFWKLDEIKGELWELFGIDSPHGDGDYNEAVMFGYAVAWFIEEFYKFYEEKPKVIAHFHEWMAGVG 157 (633)
T ss_dssp STT--EEEEEEGGGGGGGHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHHHHHHHH-S-SEEEEEEEESGGGTTH
T ss_pred ECCcCeEEEEeCchHHHHHHHHHHHHHHHcCCCCCCCCcchhHHHHHHHHHHHHHHHHHHhhcCCCcEEEEechHhHhHH
Confidence 7788876654211111 11111111 11233333445444444443 222233 3669999999877
Q ss_pred HHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhc-----cccccCCCcccchhhchhcccc
Q 043397 250 PLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAI-----DDRTIGHNPERLSLLKGGIVYS 324 (596)
Q Consensus 250 ~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~a 324 (596)
.++++.. ...+..|+|.|.... |. ..++-...+|..+.+.- .++.+ ..+.++++.+..+|
T Consensus 158 ll~lr~~-----~~~VaTvFTTHAT~l-GR------~l~~~~~~~Y~~L~~~~~d~eA~~~~i---~~k~~iEraaA~~A 222 (633)
T PF05693_consen 158 LLYLRKR-----KPDVATVFTTHATLL-GR------YLAANNKDFYNNLDKFNGDQEAGERNI---YHKHSIERAAAHYA 222 (633)
T ss_dssp HHHHHHT-----T-SCEEEEEESS-HH-HH------HHTTTSS-TTTSGTTS-HHHHHHHTT----HHHHHHHHHHHHHS
T ss_pred HHHHhcc-----CCCeeEEEEecccch-hh------HhhcCCCcHHHHhhccCccccccCccc---hHHHHHHHHHHHhc
Confidence 6666543 568899999996642 10 01122223333332211 11111 14568889999999
Q ss_pred CeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhc-C-CCC
Q 043397 325 NAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGL-G-LKS 402 (596)
Q Consensus 325 d~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l-~-l~~ 402 (596)
|.+.|||+-.+.|.. .+++..+ =.|+|||++.+.+....+ |.......|+.....++..+ | ..-
T Consensus 223 dvFTTVSeITa~Ea~------~LL~r~p--DvV~pNGl~v~~~~~~~e------fqnl~~~~k~ki~~fv~~~f~g~~df 288 (633)
T PF05693_consen 223 DVFTTVSEITAKEAE------HLLKRKP--DVVTPNGLNVDKFPALHE------FQNLHAKAKEKIHEFVRGHFYGHYDF 288 (633)
T ss_dssp SEEEESSHHHHHHHH------HHHSS----SEE----B-GGGTSSTTH------HHHHHHHHHHHHHHHHHHHSTT---S
T ss_pred CeeeehhhhHHHHHH------HHhCCCC--CEEcCCCccccccccchH------HHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 999999998888743 2233222 257899999877654311 11001112222233333333 2 111
Q ss_pred CC-CccEEEEEeccc-ccCCHHHHHHHHHHHHH----c--CC---EEEEEecC---------------------------
Q 043397 403 EG-TVPLVVCITRLV-AQKGLHLITHAIKRAEE----L--GG---QMILLGNS--------------------------- 444 (596)
Q Consensus 403 ~~-~~~~il~iGrl~-~~KGi~~ll~A~~~l~~----~--~~---~lvIvG~~--------------------------- 444 (596)
+. +..+|...||.+ ..||+|.+|+|+.++.. . +. -|+|+=..
T Consensus 289 d~d~tl~~ftsGRYEf~NKG~D~fieAL~rLn~~lk~~~~~~tVVaFii~pa~~~~~~ve~l~~~a~~~~l~~t~~~i~~ 368 (633)
T PF05693_consen 289 DLDKTLYFFTSGRYEFRNKGIDVFIEALARLNHRLKQAGSDKTVVAFIIVPAKTNSFNVESLKGQAVTKQLRDTVDEIQE 368 (633)
T ss_dssp -GGGEEEEEEESSS-TTTTTHHHHHHHHHHHHHHHHHTT-S-EEEEEEE---SEEEE-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEEeeeceeeecCCccHHHHHHHHHHHHHhhcCCCCeEEEEEEecCccCCcCHHHHhhHHHHHHHHHHHHHHHH
Confidence 22 455678889995 57999999999999854 1 22 34444210
Q ss_pred ---------------CC----------------------------------CcchHHHHHHHHHcCCC----Cc--EEEE
Q 043397 445 ---------------PV----------------------------------HWVQKDFEDLANLHNKG----TS--TRIL 469 (596)
Q Consensus 445 ---------------~~----------------------------------g~~~~~l~~~~~~~~~~----~~--V~~~ 469 (596)
++ ....+.+...+++.++. ++ |+|+
T Consensus 369 ~~g~~~~~~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~d~~~DpILn~irr~~L~N~~~drVKVIF~ 448 (633)
T PF05693_consen 369 KIGKRLFESCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLHDDSNDPILNMIRRLGLFNNPEDRVKVIFH 448 (633)
T ss_dssp HHHHHHHHHHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEETTTTT-HHHHHHHHTT----TT-SEEEEE-
T ss_pred HHHHHHHHHHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCCCCccCHHHHHHHhCCCCCCCCCceEEEEe
Confidence 00 00123333334444432 33 5555
Q ss_pred e-ccC------HHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEe--
Q 043397 470 L-MYS------EELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFE-- 540 (596)
Q Consensus 470 g-~~~------~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~-- 540 (596)
. +++ .=...+++..||+.|+||++||+|.+.+|+.++|+|.|.|+..|+...+.+.-. .....|+.+-
T Consensus 449 P~yL~~~dgif~l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~---~~~~~GV~VvdR 525 (633)
T PF05693_consen 449 PEYLSGTDGIFNLDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIE---DPEEYGVYVVDR 525 (633)
T ss_dssp -S---TTSSSS-S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS----HHGGGTEEEE-S
T ss_pred eccccCCCCCCCCCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhc---cCcCCcEEEEeC
Confidence 4 222 224678999999999999999999999999999999999999997776654211 1134576663
Q ss_pred -CCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHh
Q 043397 541 -GIDEGSLNWALDRAFRHFI-DKPEEWNRIVQKIME--NDNSWNNAAGKYMEIYNSIR 594 (596)
Q Consensus 541 -~~d~~~la~~i~~ll~~~~-~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~iy~~l~ 594 (596)
..+.++.+++|.+.+..+- .++..+..++.++.+ +..+|++....|.+.|+..+
T Consensus 526 ~~~n~~e~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~dW~~~~~yY~~Ay~~AL 583 (633)
T PF05693_consen 526 RDKNYDESVNQLADFLYKFCQLSRRQRIIQRNRAERLSDLADWKNFGKYYEKAYDLAL 583 (633)
T ss_dssp SSS-HHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHGGGGBHHHHCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 2345555555544443221 244444454444443 78999999999999998765
No 96
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=99.65 E-value=1e-13 Score=145.97 Aligned_cols=316 Identities=15% Similarity=0.052 Sum_probs=213.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCc
Q 043397 213 NELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDG 292 (596)
Q Consensus 213 ~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~ 292 (596)
..+..|....+...+.+......-|+|.+|+++..++|..+... .+..++-+.+|...|... .+..+...
T Consensus 101 ~~w~~Y~~VN~~FA~~v~~~~~~~D~VWVHDYhL~llp~~LR~~-----~~~~~IgFFlHiPFPs~e----ifr~LP~r- 170 (474)
T PRK10117 101 PAWEGYLRVNALLADKLLPLLKDDDIIWIHDYHLLPFASELRKR-----GVNNRIGFFLHIPFPTPE----IFNALPPH- 170 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccHhhHHHHHHHHh-----CCCCcEEEEEeCCCCChH----HHhhCCCh-
Confidence 34555655445444444433345589999999999999988765 678899999998876322 11111111
Q ss_pred hhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhh------------ccCCcEEEeeC
Q 043397 293 SIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLI------------THRDKYFGILN 360 (596)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~------------~~~~ki~vI~n 360 (596)
.-+-.++..+|.|-+.+..+++.++++ ....++ ...-++.+.|-
T Consensus 171 ----------------------~eil~glL~aDlIGFqt~~y~rnFl~~--~~~~lg~~~~~~~~v~~~gr~v~v~~~Pi 226 (474)
T PRK10117 171 ----------------------DELLEQLCDYDLLGFQTENDRLAFLDC--LSNLTRVTTRSGKSHTAWGKAFRTEVYPI 226 (474)
T ss_pred ----------------------HHHHHHHHhCccceeCCHHHHHHHHHH--HHHHcCCcccCCCeEEECCeEEEEEEEEC
Confidence 112335666999999999999888742 111111 11234667788
Q ss_pred CCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHH--c----
Q 043397 361 GIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--L---- 434 (596)
Q Consensus 361 Gid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~---- 434 (596)
|||++.|...... .. ....+.+++.+ .++.+|+.+.|++.-||+..=++|++++.+ |
T Consensus 227 gID~~~~~~~a~~-----------~~-~~~~~~lr~~~-----~~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~g 289 (474)
T PRK10117 227 GIEPDEIAKQAAG-----------PL-PPKLAQLKAEL-----KNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHG 289 (474)
T ss_pred eEcHHHHHHHhhc-----------hH-HHHHHHHHHHc-----CCCeEEEEecccccccCHHHHHHHHHHHHHhChhhcC
Confidence 9998776432110 01 11234455554 356789999999999999999999999876 2
Q ss_pred CCEEEEEecCC--CC----cchHHHHHHHH----HcCCCCc--EEEE-eccCHHHHHHHHHhCCEEEEcCCCCCCchHHH
Q 043397 435 GGQMILLGNSP--VH----WVQKDFEDLAN----LHNKGTS--TRIL-LMYSEELSHMLYAAADIVLVPSIYEPCGLAQM 501 (596)
Q Consensus 435 ~~~lvIvG~~~--~g----~~~~~l~~~~~----~~~~~~~--V~~~-g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~l 501 (596)
++.|+-+..+. +. .+..++++++. +++..+. |+++ ..++.+++..+|+.||+++++|..+|+.|+..
T Consensus 290 kvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAk 369 (474)
T PRK10117 290 KIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAK 369 (474)
T ss_pred CEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhccEEEecccccccccccc
Confidence 45666555421 11 23344554444 3443332 5655 67899999999999999999999999999999
Q ss_pred HHHhcCC-----ceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--
Q 043397 502 IGMRYGA-----VPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME-- 574 (596)
Q Consensus 502 EAma~G~-----pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~-- 574 (596)
|+.+|.. +.|.|...|.++.+. ..++++|.|.++++++|.+++++. ++++++..+...+
T Consensus 370 Eyva~q~~~~~GvLILSefAGaA~~L~-----------~AllVNP~d~~~~A~Ai~~AL~Mp---~~Er~~R~~~l~~~v 435 (474)
T PRK10117 370 EYVAAQDPANPGVLVLSQFAGAANELT-----------SALIVNPYDRDEVAAALDRALTMP---LAERISRHAEMLDVI 435 (474)
T ss_pred hheeeecCCCCccEEEecccchHHHhC-----------CCeEECCCCHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHh
Confidence 9999964 366687777777763 478999999999999999999963 3333332322222
Q ss_pred hcCCHHHHHHHHHHHHHHH
Q 043397 575 NDNSWNNAAGKYMEIYNSI 593 (596)
Q Consensus 575 ~~fs~~~~~~~~~~iy~~l 593 (596)
..++....++.+++-.+.+
T Consensus 436 ~~~dv~~W~~~fL~~L~~~ 454 (474)
T PRK10117 436 VKNDINHWQECFISDLKQI 454 (474)
T ss_pred hhCCHHHHHHHHHHHHHHh
Confidence 5789999999888766554
No 97
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=99.65 E-value=5.3e-14 Score=150.01 Aligned_cols=317 Identities=17% Similarity=0.144 Sum_probs=183.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCc
Q 043397 213 NELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDG 292 (596)
Q Consensus 213 ~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~ 292 (596)
..+..|....+...+.+...-..-|+|.+|+++..++|..+... .++.++.+.+|...|... .+..+...
T Consensus 119 ~~w~~Y~~vN~~FA~~i~~~~~~~D~VWVhDYhL~llP~~LR~~-----~~~~~IgfFlHiPFPs~e----~fr~lP~r- 188 (474)
T PF00982_consen 119 EWWEAYKRVNRRFADAIAEVYRPGDLVWVHDYHLMLLPQMLRER-----GPDARIGFFLHIPFPSSE----IFRCLPWR- 188 (474)
T ss_dssp HHHHHHHHHHHHHHHHHGGG--TT-EEEEESGGGTTHHHHHHHT-----T--SEEEEEE-S----HH----HHTTSTTH-
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCCCEEEEeCCcHHHHHHHHHhh-----cCCceEeeEEecCCCCHH----HHhhCCcH-
Confidence 34455555555555555544467889999999999999988765 678999999998776322 11111111
Q ss_pred hhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhc-------------cCCcEEEee
Q 043397 293 SIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLIT-------------HRDKYFGIL 359 (596)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~-------------~~~ki~vI~ 359 (596)
.-+-.++..||.|-+.+..+++.++.+ ..+.++. ..-++.+.|
T Consensus 189 ----------------------~eiL~glL~aDlIgFqt~~~~~nFl~~--~~r~lg~~~~~~~~~v~~~Gr~v~v~~~p 244 (474)
T PF00982_consen 189 ----------------------EEILRGLLGADLIGFQTFEYARNFLSC--CKRLLGLEVDSDRGTVEYNGRRVRVGVFP 244 (474)
T ss_dssp ----------------------HHHHHHHTTSSEEEESSHHHHHHHHHH--HHHHS-EEEEETTE-EEETTEEEEEEE--
T ss_pred ----------------------HHHHHHhhcCCEEEEecHHHHHHHHHH--HHHHcCCcccCCCceEEECCEEEEEEEee
Confidence 112235566999999999999988743 1222221 123466778
Q ss_pred CCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHH--c---
Q 043397 360 NGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--L--- 434 (596)
Q Consensus 360 nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~--- 434 (596)
-|||++.+...... +.-....+.+++.++ .+..+|+.+.|++..||+..=+.|++++.+ |
T Consensus 245 igId~~~~~~~~~~-----------~~v~~~~~~l~~~~~----~~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~ 309 (474)
T PF00982_consen 245 IGIDPDAFAQLARS-----------PEVQERAEELREKFK----GKRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEYR 309 (474)
T ss_dssp ----HHHHHHHHH------------S---HHHHHHHHHTT----T-SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGT
T ss_pred ccCChHHHHhhccC-----------hHHHHHHHHHHHhcC----CCcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCcc
Confidence 88888766321000 001112344555553 224889999999999999999999999876 3
Q ss_pred -CCEEEEEecCC--CCc----chHHHHHHHH----HcCCCC--cEEEE-eccCHHHHHHHHHhCCEEEEcCCCCCCchHH
Q 043397 435 -GGQMILLGNSP--VHW----VQKDFEDLAN----LHNKGT--STRIL-LMYSEELSHMLYAAADIVLVPSIYEPCGLAQ 500 (596)
Q Consensus 435 -~~~lvIvG~~~--~g~----~~~~l~~~~~----~~~~~~--~V~~~-g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~ 500 (596)
++.|+-++... +.+ +..++++++. ++|..+ -|+++ +.++.+++..+|+.||+++++|..+|+.++.
T Consensus 310 ~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva 389 (474)
T PF00982_consen 310 GKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYRAADVALVTSLRDGMNLVA 389 (474)
T ss_dssp TTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHHH-SEEEE--SSBS--HHH
T ss_pred CcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHHhhhhEEecchhhccCCcc
Confidence 45666555421 121 3344444443 455333 25666 6799999999999999999999999999999
Q ss_pred HHHHhcCCc----eEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--
Q 043397 501 MIGMRYGAV----PVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME-- 574 (596)
Q Consensus 501 lEAma~G~p----vI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~-- 574 (596)
.|+.+|... +|.|...|..+.+.+ ..++++|.|.++++++|.++|++ .+++++...++..+
T Consensus 390 ~Eyva~q~~~~GvLiLSefaGaa~~L~~----------~al~VNP~d~~~~A~ai~~AL~M---~~~Er~~r~~~~~~~v 456 (474)
T PF00982_consen 390 KEYVACQDDNPGVLILSEFAGAAEQLSE----------AALLVNPWDIEEVADAIHEALTM---PPEERKERHARLREYV 456 (474)
T ss_dssp HHHHHHS-TS--EEEEETTBGGGGT-TT----------S-EEE-TT-HHHHHHHHHHHHT-----HHHHHHHHHHHHHHH
T ss_pred eEEEEEecCCCCceEeeccCCHHHHcCC----------ccEEECCCChHHHHHHHHHHHcC---CHHHHHHHHHHHHHHh
Confidence 999998665 666888888887744 34999999999999999999996 33443333333222
Q ss_pred hcCCHHHHHHHHHHHHH
Q 043397 575 NDNSWNNAAGKYMEIYN 591 (596)
Q Consensus 575 ~~fs~~~~~~~~~~iy~ 591 (596)
..++....++++++-.+
T Consensus 457 ~~~~~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 457 REHDVQWWAESFLRDLK 473 (474)
T ss_dssp HHT-HHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhh
Confidence 57888888888876543
No 98
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.65 E-value=5.7e-16 Score=138.41 Aligned_cols=129 Identities=23% Similarity=0.295 Sum_probs=95.5
Q ss_pred ccEEEEEecccccCCHHHHHH-HHHHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH
Q 043397 406 VPLVVCITRLVAQKGLHLITH-AIKRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA 482 (596)
Q Consensus 406 ~~~il~iGrl~~~KGi~~ll~-A~~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a 482 (596)
.++++++|++.+.||++.+++ +++++.+ ++++|+|+|. ++. +++++ ..++|+++|++ +++.++++
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~---~~~--~l~~~-----~~~~v~~~g~~--~e~~~~l~ 69 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGN---GPD--ELKRL-----RRPNVRFHGFV--EELPEILA 69 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECE---SS---HHCCH-----HHCTEEEE-S---HHHHHHHH
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeC---CHH--HHHHh-----cCCCEEEcCCH--HHHHHHHH
Confidence 357999999999999999999 9999876 6899999998 544 24444 24589999999 47999999
Q ss_pred hCCEEEEcCC-CCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 483 AADIVLVPSI-YEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 483 ~aDi~l~PS~-~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
+||++++|+. .++++.+++|||++|+|+|+++. +..++++. .+.|+++ .+|+++++++|.++++
T Consensus 70 ~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-~~~~~~~~--------~~~~~~~-~~~~~~l~~~i~~l~~ 134 (135)
T PF13692_consen 70 AADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-GAEGIVEE--------DGCGVLV-ANDPEELAEAIERLLN 134 (135)
T ss_dssp C-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-HCHCHS-----------SEEEE--TT-HHHHHHHHHHHHH
T ss_pred hCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-chhhheee--------cCCeEEE-CCCHHHHHHHHHHHhc
Confidence 9999999996 58899999999999999999988 66677654 3577777 7799999999999986
No 99
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.63 E-value=2.7e-13 Score=142.98 Aligned_cols=207 Identities=14% Similarity=-0.019 Sum_probs=131.0
Q ss_pred ccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCC
Q 043397 321 IVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGL 400 (596)
Q Consensus 321 ~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l 400 (596)
.+++|.|+++++...+.+... ..++.++.|++......... .+...++.+++
T Consensus 136 ~~~~d~v~~~~~~e~~~~~~~----------g~~~~~vGnPv~~~~~~~~~------------------~~~~~r~~lgl 187 (385)
T TIGR00215 136 EKATDFLLAILPFEKAFYQKK----------NVPCRFVGHPLLDAIPLYKP------------------DRKSAREKLGI 187 (385)
T ss_pred HHHHhHhhccCCCcHHHHHhc----------CCCEEEECCchhhhccccCC------------------CHHHHHHHcCC
Confidence 456899999998776664322 23566777776432211000 13345677888
Q ss_pred CCCCCccEEEEE-e-cccc-cCCHHHHHHHHHHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHH
Q 043397 401 KSEGTVPLVVCI-T-RLVA-QKGLHLITHAIKRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEE 475 (596)
Q Consensus 401 ~~~~~~~~il~i-G-rl~~-~KGi~~ll~A~~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~ 475 (596)
+ ++.++|+++ | |..+ .|++..+++|++.+.+ ++.++++.+.. +...+.+++..++++...+|.+.+.
T Consensus 188 ~--~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~---- 259 (385)
T TIGR00215 188 D--HNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVN--FKRRLQFEQIKAEYGPDLQLHLIDG---- 259 (385)
T ss_pred C--CCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCC--chhHHHHHHHHHHhCCCCcEEEECc----
Confidence 5 567776655 3 6666 7899999999998865 46788775531 4456667777777665556665543
Q ss_pred HHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEe-CCCCccccccccC-----CC----CCCCc-cceEEEeCCCH
Q 043397 476 LSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVR-KTGGLADTVFDVD-----DP----SNHEK-ANGFVFEGIDE 544 (596)
Q Consensus 476 ~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s-~~gg~~e~i~~~~-----~~----~~~~~-~~G~lv~~~d~ 544 (596)
+...+|++||++|++| |.+.+|+|++|+|+|+. .+.-++-.+.+.. -. ....+ .--++-+.-++
T Consensus 260 ~~~~~l~aADl~V~~S-----Gt~tlEa~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~ 334 (385)
T TIGR00215 260 DARKAMFAADAALLAS-----GTAALEAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTP 334 (385)
T ss_pred hHHHHHHhCCEEeecC-----CHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCH
Confidence 2457999999999998 77888999999999986 3333332221100 00 00000 01111123468
Q ss_pred HHHHHHHHHHHHhccCCH----HHHHHHHHHH
Q 043397 545 GSLNWALDRAFRHFIDKP----EEWNRIVQKI 572 (596)
Q Consensus 545 ~~la~~i~~ll~~~~~~~----~~~~~~~~~~ 572 (596)
+.+++.+.++++ |+ +.++++.+..
T Consensus 335 ~~l~~~~~~ll~----~~~~~~~~~~~~~~~~ 362 (385)
T TIGR00215 335 HPLAIALLLLLE----NGLKAYKEMHRERQFF 362 (385)
T ss_pred HHHHHHHHHHhc----CCcccHHHHHHHHHHH
Confidence 999999999998 87 7776666443
No 100
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.62 E-value=2.2e-14 Score=155.16 Aligned_cols=167 Identities=17% Similarity=0.127 Sum_probs=144.9
Q ss_pred CccEEEEEe--cccccCCHHHHHHHHHHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCC-----------------
Q 043397 405 TVPLVVCIT--RLVAQKGLHLITHAIKRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKG----------------- 463 (596)
Q Consensus 405 ~~~~il~iG--rl~~~KGi~~ll~A~~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~----------------- 463 (596)
....+++++ |+ +.|.++.+|+|+.++.. |+++|.+.|...+....+.++++++++++.
T Consensus 318 ~~~~~I~v~idrL-~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 396 (519)
T TIGR03713 318 LYETEIGFWIDGL-SDEELQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQ 396 (519)
T ss_pred ccceEEEEEcCCC-ChHHHHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhh
Confidence 345678888 99 99999999999999844 899999999822223456777777777655
Q ss_pred ------------CcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCC
Q 043397 464 ------------TSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNH 531 (596)
Q Consensus 464 ------------~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~ 531 (596)
.+|.|.|..++.++...|..+.++|.+|..|+++ +++||++.|+|+| .-|..++|.+
T Consensus 397 ~~~~~~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqI---nyg~~~~V~d------- 465 (519)
T TIGR03713 397 PILQTDEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQI---NKVETDYVEH------- 465 (519)
T ss_pred hcccchhhcccccEEEEEecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCee---ecCCceeeEc-------
Confidence 6899999999888999999999999999999999 9999999999999 5567999999
Q ss_pred CccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 043397 532 EKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME--NDNSWNNAAGKYMEIY 590 (596)
Q Consensus 532 ~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~iy 590 (596)
+.||+++ +|..+|+++|..+|+ ++..|.++...+++ ++||-+++.+++.+++
T Consensus 466 -~~NG~li--~d~~~l~~al~~~L~----~~~~wn~~~~~sy~~~~~yS~~~i~~kW~~~~ 519 (519)
T TIGR03713 466 -NKNGYII--DDISELLKALDYYLD----NLKNWNYSLAYSIKLIDDYSSENIIERLNELI 519 (519)
T ss_pred -CCCcEEe--CCHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhC
Confidence 8999999 599999999999999 99999999988877 7999999999987753
No 101
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=6.4e-13 Score=139.17 Aligned_cols=316 Identities=17% Similarity=0.160 Sum_probs=212.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCc
Q 043397 213 NELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDG 292 (596)
Q Consensus 213 ~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~ 292 (596)
+.+..|..+.+...+.+...-..=|+|.+|+++..++|..+... .+..++.|.+|-..|..+ .+..+....
T Consensus 125 ~~w~~Y~~vN~~FAd~i~~~~~~gDiIWVhDYhL~L~P~mlR~~-----~~~~~IgfFlHiPfPssE----vfr~lP~r~ 195 (486)
T COG0380 125 NWWDAYVKVNRKFADKIVEIYEPGDIIWVHDYHLLLVPQMLRER-----IPDAKIGFFLHIPFPSSE----VFRCLPWRE 195 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCEEEEEechhhhhHHHHHHh-----CCCceEEEEEeCCCCCHH----HHhhCchHH
Confidence 34555655555555555444345599999999999999998766 678899999998876322 222111111
Q ss_pred hhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhh-------------ccCCcEEEee
Q 043397 293 SIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLI-------------THRDKYFGIL 359 (596)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~-------------~~~~ki~vI~ 359 (596)
-+-.++..||.|-+.++.+++.++.. ..+.++ ....++..+|
T Consensus 196 -----------------------eIl~gll~~dligFqt~~y~~nF~~~--~~r~~~~~~~~~~~~~~~~~~~v~v~a~P 250 (486)
T COG0380 196 -----------------------EILEGLLGADLIGFQTESYARNFLDL--CSRLLGVTGDADIRFNGADGRIVKVGAFP 250 (486)
T ss_pred -----------------------HHHHHhhcCCeeEecCHHHHHHHHHH--HHHhccccccccccccccCCceEEEEEEe
Confidence 12234566999999999999988732 122221 1235677789
Q ss_pred CCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHH--c---
Q 043397 360 NGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--L--- 434 (596)
Q Consensus 360 nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~--- 434 (596)
-|||+..|...... . .-......+++.++ .++.+|+.+-|++.-||+..=+.|++++++ |
T Consensus 251 IgID~~~~~~~~~~--------~---~v~~~~~el~~~~~----~~~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~ 315 (486)
T COG0380 251 IGIDPEEFERALKS--------P---SVQEKVLELKAELG----RNKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWR 315 (486)
T ss_pred eecCHHHHHHhhcC--------C---chhhHHHHHHHHhc----CCceEEEEehhcccccCcHHHHHHHHHHHHhChhhh
Confidence 99998776432110 0 00012334445543 347889999999999999999999999985 2
Q ss_pred -CCEEEEEecCCCCc------chHHHHHHHH----HcCCCCc--EEEE-eccCHHHHHHHHHhCCEEEEcCCCCCCchHH
Q 043397 435 -GGQMILLGNSPVHW------VQKDFEDLAN----LHNKGTS--TRIL-LMYSEELSHMLYAAADIVLVPSIYEPCGLAQ 500 (596)
Q Consensus 435 -~~~lvIvG~~~~g~------~~~~l~~~~~----~~~~~~~--V~~~-g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~ 500 (596)
++.|+-++....+. +..+++.++. ++|..+. |.|+ -.++.+++..+|..||+++++|..+|+.++.
T Consensus 316 ~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv~lVtplrDGMNLva 395 (486)
T COG0380 316 GKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAADVMLVTPLRDGMNLVA 395 (486)
T ss_pred CceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHhhhceeeeccccccccHHH
Confidence 45666666532222 2233333333 4444332 5555 5599999999999999999999999999999
Q ss_pred HHHHhcC----CceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--
Q 043397 501 MIGMRYG----AVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME-- 574 (596)
Q Consensus 501 lEAma~G----~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~-- 574 (596)
.|+.+|- -+.|.|...|....+. ..++++|.|.++++++|.++|++ .++++++.-+..++
T Consensus 396 kEyVa~q~~~~G~LiLSeFaGaa~~L~-----------~AliVNP~d~~~va~ai~~AL~m---~~eEr~~r~~~~~~~v 461 (486)
T COG0380 396 KEYVAAQRDKPGVLILSEFAGAASELR-----------DALIVNPWDTKEVADAIKRALTM---SLEERKERHEKLLKQV 461 (486)
T ss_pred HHHHHhhcCCCCcEEEeccccchhhhc-----------cCEeECCCChHHHHHHHHHHhcC---CHHHHHHHHHHHHHHH
Confidence 9998873 2566677767666663 38999999999999999999996 44444333333332
Q ss_pred hcCCHHHHHHHHHHHHH
Q 043397 575 NDNSWNNAAGKYMEIYN 591 (596)
Q Consensus 575 ~~fs~~~~~~~~~~iy~ 591 (596)
.+++.+..+..+++-..
T Consensus 462 ~~~d~~~W~~~fl~~la 478 (486)
T COG0380 462 LTHDVARWANSFLDDLA 478 (486)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 47888888888775443
No 102
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=99.55 E-value=3.3e-12 Score=145.14 Aligned_cols=317 Identities=12% Similarity=0.068 Sum_probs=206.8
Q ss_pred hHHHHHHHHHHHHHHHHhhCC-CCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCc
Q 043397 214 ELEAYLFFSRACLEWMQVTGV-QPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDG 292 (596)
Q Consensus 214 ~~~~~~~f~~~~~~~l~~~~~-~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~ 292 (596)
.++.|....+...+.+..... .-|+|.+|++|..++|.++... .+..++-+.+|...|..+ .+..+...
T Consensus 179 ~w~~Y~~vN~~FA~~v~~~~~~~~d~VWVhDYhL~llP~~LR~~-----~~~~~IgfFlHiPFPs~e----ifr~LP~r- 248 (854)
T PLN02205 179 LWQAYVSVNKIFADRIMEVINPEDDFVWIHDYHLMVLPTFLRKR-----FNRVKLGFFLHSPFPSSE----IYKTLPIR- 248 (854)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCchhhHHHHHHHhh-----CCCCcEEEEecCCCCChH----HHhhCCcH-
Confidence 345555444443333332212 2389999999999999988765 678999999998876322 11111111
Q ss_pred hhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhc---------------cCCcEEE
Q 043397 293 SIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLIT---------------HRDKYFG 357 (596)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~---------------~~~ki~v 357 (596)
.-+-.++..||.|-+.+..+++.++.+ ..+.++. ..-+|.+
T Consensus 249 ----------------------~eiL~glL~aDlIGFht~~yar~Fl~~--~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~ 304 (854)
T PLN02205 249 ----------------------EELLRALLNSDLIGFHTFDYARHFLSC--CSRMLGLSYESKRGYIGLEYYGRTVSIKI 304 (854)
T ss_pred ----------------------HHHHHHHhcCCeEEecCHHHHHHHHHH--HHHHhCCcccCCCcceeEEECCcEEEEEE
Confidence 112335667999999999999998742 1222221 2234667
Q ss_pred eeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHH--c-
Q 043397 358 ILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--L- 434 (596)
Q Consensus 358 I~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~- 434 (596)
.|-|||...|..... . .......+.++++++- +++.+|+-+.|++..||+..=+.|++++.+ |
T Consensus 305 ~PigId~~~~~~~~~----------~-~~~~~~~~~l~~~~~~---~~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~ 370 (854)
T PLN02205 305 LPVGIHMGQLQSVLS----------L-PETEAKVKELIKQFCD---QDRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPE 370 (854)
T ss_pred EeCeEcHHHHHHHhc----------C-hhHHHHHHHHHHHhcc---CCCEEEEEccCcccccCHHHHHHHHHHHHHhCcc
Confidence 788899876632210 0 0112223455666542 357899999999999999999999999976 3
Q ss_pred ---CCEEEEEecCC--CCc----chHHHHHHHH----HcCCCC--cEEEE-eccCHHHHHHHHHhCCEEEEcCCCCCCch
Q 043397 435 ---GGQMILLGNSP--VHW----VQKDFEDLAN----LHNKGT--STRIL-LMYSEELSHMLYAAADIVLVPSIYEPCGL 498 (596)
Q Consensus 435 ---~~~lvIvG~~~--~g~----~~~~l~~~~~----~~~~~~--~V~~~-g~~~~~~l~~~~a~aDi~l~PS~~E~~gl 498 (596)
++.|+-+..+. ++. ++.++++++. +++-.+ -|+++ ..++.+++..+|+.||++++++..+|+.+
T Consensus 371 ~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ADv~lVT~lRDGMNL 450 (854)
T PLN02205 371 WQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVVAECCLVTAVRDGMNL 450 (854)
T ss_pred ccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHhccEEEeccccccccc
Confidence 34566555421 122 2333444444 444322 26666 67899999999999999999999999999
Q ss_pred HHHHHHhcCC-------------------ceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhcc
Q 043397 499 AQMIGMRYGA-------------------VPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFI 559 (596)
Q Consensus 499 ~~lEAma~G~-------------------pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~ 559 (596)
+..|+.+|.. ..|.|..-|....+. ..++++|.|.++++++|.+++++.
T Consensus 451 va~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~L~-----------~Ai~VNP~d~~~~a~ai~~AL~m~- 518 (854)
T PLN02205 451 IPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCSPSLS-----------GAIRVNPWNIDAVADAMDSALEMA- 518 (854)
T ss_pred cchheeEEccCccccccccccccccCCCCceEeeeccchhHHhC-----------cCeEECCCCHHHHHHHHHHHHcCC-
Confidence 9999998743 245566656555552 478999999999999999999964
Q ss_pred CCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHH
Q 043397 560 DKPEEWNRIVQKIME--NDNSWNNAAGKYMEIYNS 592 (596)
Q Consensus 560 ~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~iy~~ 592 (596)
+++++...++..+ ..++....++.+++-.+.
T Consensus 519 --~~Er~~R~~~~~~~v~~~d~~~W~~~fl~~l~~ 551 (854)
T PLN02205 519 --EPEKQLRHEKHYRYVSTHDVGYWARSFLQDLER 551 (854)
T ss_pred --HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 3332222222222 577888888887765443
No 103
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.42 E-value=1.1e-12 Score=121.93 Aligned_cols=176 Identities=25% Similarity=0.263 Sum_probs=92.3
Q ss_pred EEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCCe
Q 043397 111 IIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSSI 190 (596)
Q Consensus 111 Il~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 190 (596)
|+++. .+.+ ..||.++++.+|+++|+++||+|+++++......... .+
T Consensus 1 ili~~-~~~~--~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~-----------------------------~~ 48 (177)
T PF13439_consen 1 ILITN-IFLP--NIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEE-----------------------------LV 48 (177)
T ss_dssp -EEEC-C-TT--SSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SST-----------------------------EE
T ss_pred CEEEE-ecCC--CCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhh-----------------------------cc
Confidence 44554 4445 5799999999999999999999999986644321111 00
Q ss_pred EEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEE
Q 043397 191 PVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLT 270 (596)
Q Consensus 191 ~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~t 270 (596)
...... .....+ ...........+.+.+++ .+|||||+|.+.......... . +.|++++
T Consensus 49 ~~~~~~--~~~~~~---------~~~~~~~~~~~~~~~i~~--~~~DiVh~~~~~~~~~~~~~~-------~-~~~~v~~ 107 (177)
T PF13439_consen 49 KIFVKI--PYPIRK---------RFLRSFFFMRRLRRLIKK--EKPDIVHIHGPPAFWIALLAC-------R-KVPIVYT 107 (177)
T ss_dssp EE---T--T-SSTS---------S--HHHHHHHHHHHHHHH--HT-SEEECCTTHCCCHHHHHH-------H-CSCEEEE
T ss_pred ceeeee--eccccc---------ccchhHHHHHHHHHHHHH--cCCCeEEecccchhHHHHHhc-------c-CCCEEEE
Confidence 000000 000010 011122334455556655 499999999766554443322 1 7899999
Q ss_pred EcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhc
Q 043397 271 IHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLIT 350 (596)
Q Consensus 271 iH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~ 350 (596)
.|+.... ..........+.... ....+...+.+|.++++|+..++++.+ ++.
T Consensus 108 ~H~~~~~-------~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~ii~vS~~~~~~l~~-------~~~ 159 (177)
T PF13439_consen 108 IHGPYFE-------RRFLKSKLSPYSYLN--------------FRIERKLYKKADRIIAVSESTKDELIK-------FGI 159 (177)
T ss_dssp E-HHH---------HHTTTTSCCCHHHHH--------------HCTTHHHHCCSSEEEESSHHHHHHHHH-------HT-
T ss_pred eCCCccc-------ccccccccchhhhhh--------------hhhhhhHHhcCCEEEEECHHHHHHHHH-------hCC
Confidence 9987632 000011111111111 112233356799999999999999654 446
Q ss_pred cCCcEEEeeCCCCCCCc
Q 043397 351 HRDKYFGILNGIDTVIW 367 (596)
Q Consensus 351 ~~~ki~vI~nGid~~~~ 367 (596)
++.++.+||||||++.|
T Consensus 160 ~~~ki~vI~ngid~~~F 176 (177)
T PF13439_consen 160 PPEKIHVIYNGIDTDRF 176 (177)
T ss_dssp -SS-EEE----B-CCCH
T ss_pred cccCCEEEECCccHHHc
Confidence 67999999999998876
No 104
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.41 E-value=4.9e-10 Score=115.59 Aligned_cols=315 Identities=15% Similarity=0.098 Sum_probs=182.1
Q ss_pred cccCHHHHHhHHHHHHHhcCCe-EEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCCeEEEEEcCCccc
Q 043397 123 KVGGLGDVVTGLARACLSRGHT-VDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSSIPVIFIEPSNQF 201 (596)
Q Consensus 123 ~~GG~~~~~~~La~aL~~~Gh~-V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~~~ 201 (596)
.+||--..+..++++|.++|++ |.++...... +. +.....++.++.++. ..
T Consensus 9 GTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~--e~------------------------~l~~~~~~~~~~I~~--~~ 60 (357)
T COG0707 9 GTGGHVFPALALAEELAKRGWEQVIVLGTGDGL--EA------------------------FLVKQYGIEFELIPS--GG 60 (357)
T ss_pred CCccchhHHHHHHHHHHhhCccEEEEecccccc--ee------------------------eeccccCceEEEEec--cc
Confidence 3577777788899999999995 6665322111 00 011123566666662 11
Q ss_pred cCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcch
Q 043397 202 FKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECR 281 (596)
Q Consensus 202 ~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~ 281 (596)
+++...+. ......+.......+.+.++. .+||+|.........-+.+... ..++|++.+..|..+
T Consensus 61 ~~~~~~~~-~~~~~~~~~~~~~~a~~il~~--~kPd~vig~Ggyvs~P~~~Aa~------~~~iPv~ihEqn~~~----- 126 (357)
T COG0707 61 LRRKGSLK-LLKAPFKLLKGVLQARKILKK--LKPDVVIGTGGYVSGPVGIAAK------LLGIPVIIHEQNAVP----- 126 (357)
T ss_pred ccccCcHH-HHHHHHHHHHHHHHHHHHHHH--cCCCEEEecCCccccHHHHHHH------hCCCCEEEEecCCCc-----
Confidence 22211111 111122222233334444443 7999999876555444444332 468999977766554
Q ss_pred hhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCC
Q 043397 282 QEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNG 361 (596)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nG 361 (596)
|+..++. .++++.|.+.-+. ... ..+.+++.+.-|.
T Consensus 127 -------G~ank~~-------------------------~~~a~~V~~~f~~-~~~-----------~~~~~~~~~tG~P 162 (357)
T COG0707 127 -------GLANKIL-------------------------SKFAKKVASAFPK-LEA-----------GVKPENVVVTGIP 162 (357)
T ss_pred -------chhHHHh-------------------------HHhhceeeecccc-ccc-----------cCCCCceEEecCc
Confidence 2222222 2235555444432 111 1234568888888
Q ss_pred CCCCCcC-CCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEE-ecccccCCHHHHHHHHHHHHHcCCEEE
Q 043397 362 IDTVIWN-PATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCI-TRLVAQKGLHLITHAIKRAEELGGQMI 439 (596)
Q Consensus 362 id~~~~~-p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~i-Grl~~~KGi~~ll~A~~~l~~~~~~lv 439 (596)
+..+... |. ...+.. +. .++++|+.+ |.....+=-+.+.++...+.+ +++++
T Consensus 163 vr~~~~~~~~---------------------~~~~~~-~~---~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~ 216 (357)
T COG0707 163 VRPEFEELPA---------------------AEVRKD-GR---LDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVI 216 (357)
T ss_pred ccHHhhccch---------------------hhhhhh-cc---CCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEE
Confidence 8765543 21 111111 11 245555544 555555533444444444433 57665
Q ss_pred EE-ecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCc
Q 043397 440 LL-GNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGL 518 (596)
Q Consensus 440 Iv-G~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~ 518 (596)
.. |. +. .+.+...-++++. +++.++.++ +..+|++||++++ -+-++++.|..++|+|.|.-..+..
T Consensus 217 ~~~G~---~~-~~~~~~~~~~~~~---~~v~~f~~d--m~~~~~~ADLvIs----RaGa~Ti~E~~a~g~P~IliP~p~~ 283 (357)
T COG0707 217 HQTGK---ND-LEELKSAYNELGV---VRVLPFIDD--MAALLAAADLVIS----RAGALTIAELLALGVPAILVPYPPG 283 (357)
T ss_pred EEcCc---ch-HHHHHHHHhhcCc---EEEeeHHhh--HHHHHHhccEEEe----CCcccHHHHHHHhCCCEEEeCCCCC
Confidence 44 44 33 4455554444443 888899988 9999999999994 3678999999999999998544433
Q ss_pred --------cccccccCCCCCCCccceEEEeCCC--HHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043397 519 --------ADTVFDVDDPSNHEKANGFVFEGID--EGSLNWALDRAFRHFIDKPEEWNRIVQKIME 574 (596)
Q Consensus 519 --------~e~i~~~~~~~~~~~~~G~lv~~~d--~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~ 574 (596)
...+++ .+.|.+++..+ ++.+.+.|.++++ +++..++|..++..
T Consensus 284 ~~~~Q~~NA~~l~~--------~gaa~~i~~~~lt~~~l~~~i~~l~~----~~~~l~~m~~~a~~ 337 (357)
T COG0707 284 ADGHQEYNAKFLEK--------AGAALVIRQSELTPEKLAELILRLLS----NPEKLKAMAENAKK 337 (357)
T ss_pred ccchHHHHHHHHHh--------CCCEEEeccccCCHHHHHHHHHHHhc----CHHHHHHHHHHHHh
Confidence 122333 45677776555 8899999999998 89999999887765
No 105
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.39 E-value=1.8e-12 Score=118.38 Aligned_cols=160 Identities=22% Similarity=0.239 Sum_probs=85.3
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCCeEEEEEcCCccccCC
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSSIPVIFIEPSNQFFKG 204 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~ 204 (596)
||+++++.+|+++|.++||+|+|+++.......+ ....|++++.++..... .
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~-~- 52 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDDE--------------------------EEEDGVRVHRLPLPRRP-W- 52 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG-S--------------------------EEETTEEEEEE--S-SS-S-
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCcccc--------------------------cccCCceEEeccCCccc-h-
Confidence 8999999999999999999999999765443211 11367888777622111 0
Q ss_pred CcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhh
Q 043397 205 KNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQ 284 (596)
Q Consensus 205 ~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~ 284 (596)
... . ..+...+.+++.....+||+||+|++..++++.++.. ..++|+|+++|+.......
T Consensus 53 -~~~-----~----~~~~~~~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~------~~~~p~v~~~h~~~~~~~~---- 112 (160)
T PF13579_consen 53 -PLR-----L----LRFLRRLRRLLAARRERPDVVHAHSPTAGLVAALARR------RRGIPLVVTVHGTLFRRGS---- 112 (160)
T ss_dssp -GGG-----H----CCHHHHHHHHCHHCT---SEEEEEHHHHHHHHHHHHH------HHT--EEEE-SS-T---------
T ss_pred -hhh-----h----HHHHHHHHHHHhhhccCCeEEEecccchhHHHHHHHH------ccCCcEEEEECCCchhhcc----
Confidence 000 0 1122333444433357999999998654544444431 2489999999975431110
Q ss_pred hhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCC
Q 043397 285 LSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNG 361 (596)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nG 361 (596)
+....++ ..+.+..++.+|.++++|+..++.+.+.| .+.+++.+||||
T Consensus 113 ----~~~~~~~------------------~~~~~~~~~~ad~vi~~S~~~~~~l~~~g-------~~~~ri~vipnG 160 (160)
T PF13579_consen 113 ----RWKRRLY------------------RWLERRLLRRADRVIVVSEAMRRYLRRYG-------VPPDRIHVIPNG 160 (160)
T ss_dssp -----HHHHHH------------------HHHHHHHHHH-SEEEESSHHHHHHHHHH----------GGGEEE----
T ss_pred ----chhhHHH------------------HHHHHHHHhcCCEEEECCHHHHHHHHHhC-------CCCCcEEEeCcC
Confidence 0001111 12345667889999999999999976544 567899999998
No 106
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.32 E-value=2.5e-09 Score=111.38 Aligned_cols=323 Identities=12% Similarity=0.083 Sum_probs=169.7
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCCeEEEEEcCCccccCC
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSSIPVIFIEPSNQFFKG 204 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~ 204 (596)
||--.=+..++++|.++||+|.+++..+... .. . + ...|++++.++. ..+.+.
T Consensus 12 GGHi~Pala~a~~l~~~g~~v~~vg~~~~~e-~~-l--~----------------------~~~g~~~~~~~~-~~l~~~ 64 (352)
T PRK12446 12 AGHVTPNLAIIPYLKEDNWDISYIGSHQGIE-KT-I--I----------------------EKENIPYYSISS-GKLRRY 64 (352)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEECCCccc-cc-c--C----------------------cccCCcEEEEec-cCcCCC
Confidence 4444445678999999999999998443221 00 0 0 012455555542 111111
Q ss_pred CcccCCChhhHHHHHHHHHHHHHHHHh-hCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhh
Q 043397 205 KNVYGGSYNELEAYLFFSRACLEWMQV-TGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQE 283 (596)
Q Consensus 205 ~~~y~~~~~~~~~~~~f~~~~~~~l~~-~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~ 283 (596)
. ....+.....+.+...+.++. ...+||+||.+.......+.+... ..++|++++..|..+
T Consensus 65 ~-----~~~~~~~~~~~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~------~~~~p~~i~e~n~~~------- 126 (352)
T PRK12446 65 F-----DLKNIKDPFLVMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGW------LNRVPVLLHESDMTP------- 126 (352)
T ss_pred c-----hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHH------HcCCCEEEECCCCCc-------
Confidence 0 001111222223333332221 147999999985443322333322 468898865444322
Q ss_pred hhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCC
Q 043397 284 QLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGID 363 (596)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid 363 (596)
++. -+...+++|.|.+.-+...+. .+.+++.++-|.+.
T Consensus 127 -----g~~-------------------------nr~~~~~a~~v~~~f~~~~~~------------~~~~k~~~tG~Pvr 164 (352)
T PRK12446 127 -----GLA-------------------------NKIALRFASKIFVTFEEAAKH------------LPKEKVIYTGSPVR 164 (352)
T ss_pred -----cHH-------------------------HHHHHHhhCEEEEEccchhhh------------CCCCCeEEECCcCC
Confidence 111 112244577776654432222 23467777777776
Q ss_pred CCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEe-cccccCCH-HHHHHHHHHHHHcCCEEEE-
Q 043397 364 TVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCIT-RLVAQKGL-HLITHAIKRAEELGGQMIL- 440 (596)
Q Consensus 364 ~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iG-rl~~~KGi-~~ll~A~~~l~~~~~~lvI- 440 (596)
.+...+. +...++.+++. +++++|+.+| .... +.+ +.+.+++..+. .++++++
T Consensus 165 ~~~~~~~--------------------~~~~~~~~~l~--~~~~~iLv~GGS~Ga-~~in~~~~~~l~~l~-~~~~vv~~ 220 (352)
T PRK12446 165 EEVLKGN--------------------REKGLAFLGFS--RKKPVITIMGGSLGA-KKINETVREALPELL-LKYQIVHL 220 (352)
T ss_pred ccccccc--------------------chHHHHhcCCC--CCCcEEEEECCccch-HHHHHHHHHHHHhhc-cCcEEEEE
Confidence 5432211 23345567765 5666665554 4443 334 33334444443 2577654
Q ss_pred EecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC-c-
Q 043397 441 LGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG-L- 518 (596)
Q Consensus 441 vG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg-~- 518 (596)
+|. ....+.. .+. .++...+++ .+++..+|++||++|.= +.++++.|++++|+|.|.-.... .
T Consensus 221 ~G~---~~~~~~~----~~~---~~~~~~~f~-~~~m~~~~~~adlvIsr----~G~~t~~E~~~~g~P~I~iP~~~~~~ 285 (352)
T PRK12446 221 CGK---GNLDDSL----QNK---EGYRQFEYV-HGELPDILAITDFVISR----AGSNAIFEFLTLQKPMLLIPLSKFAS 285 (352)
T ss_pred eCC---chHHHHH----hhc---CCcEEecch-hhhHHHHHHhCCEEEEC----CChhHHHHHHHcCCCEEEEcCCCCCC
Confidence 555 3222212 111 234445665 23488999999999954 67889999999999999864321 1
Q ss_pred -------cccccccCCCCCCCccceEEEeC--CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043397 519 -------ADTVFDVDDPSNHEKANGFVFEG--IDEGSLNWALDRAFRHFIDKPEEWNRIVQKIMENDNSWNNAAGKYMEI 589 (596)
Q Consensus 519 -------~e~i~~~~~~~~~~~~~G~lv~~--~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~i 589 (596)
.+.+.+ .+.|..+.. -+++.+.++|.++++ |++.+++..+ .+...+.+++..++
T Consensus 286 ~~~Q~~Na~~l~~--------~g~~~~l~~~~~~~~~l~~~l~~ll~----~~~~~~~~~~-----~~~~~~aa~~i~~~ 348 (352)
T PRK12446 286 RGDQILNAESFER--------QGYASVLYEEDVTVNSLIKHVEELSH----NNEKYKTALK-----KYNGKEAIQTIIDH 348 (352)
T ss_pred CchHHHHHHHHHH--------CCCEEEcchhcCCHHHHHHHHHHHHc----CHHHHHHHHH-----HcCCCCHHHHHHHH
Confidence 112222 344555543 257889999999987 7766543221 34444555555554
Q ss_pred H
Q 043397 590 Y 590 (596)
Q Consensus 590 y 590 (596)
.
T Consensus 349 i 349 (352)
T PRK12446 349 I 349 (352)
T ss_pred H
Confidence 4
No 107
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=1.3e-10 Score=126.61 Aligned_cols=411 Identities=18% Similarity=0.121 Sum_probs=251.7
Q ss_pred ccCHHHHHhHHHHHHHhcCCeEEEEeccccchhh----------hhhcc-------c---c----eeeeEEeecCC-ceE
Q 043397 124 VGGLGDVVTGLARACLSRGHTVDIMLPFYECIQK----------QEISD-------L---A----LITTYNSYHDG-NWV 178 (596)
Q Consensus 124 ~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~----------~~~~~-------~---~----~~~~~~~~~~~-~~~ 178 (596)
.||+|+.+....++++..|...+-++-.|...-- +..+. + + ..-..+++..+ +.+
T Consensus 114 gGGLGrLAgcfldS~a~Lg~P~~G~Gl~Y~~GyF~Q~~~dG~Q~E~p~~w~~~~~pwe~~r~~~a~~~d~~V~g~~~~~~ 193 (750)
T COG0058 114 GGGLGRLAGCFLDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELPDEWLKYGNPWEFLRDAEGVPYDVPVPGYDNRVV 193 (750)
T ss_pred cccHHHHHHhHHHHHHhcCCCceEEEeeecCCceeeeccCCceEecchhhhccCCcceeecccCCceeeeeEEeccCcEE
Confidence 4999999999999999999988887754432111 00000 0 0 01122333333 567
Q ss_pred EEEEEeeeeCCeEEEEEcCCcc------ccCCCcccCCCh-h-hHHHHHHHHHHHHHHHHhhC------CCCcEEEEcCC
Q 043397 179 ATNAYHGVVSSIPVIFIEPSNQ------FFKGKNVYGGSY-N-ELEAYLFFSRACLEWMQVTG------VQPDIIHVHEW 244 (596)
Q Consensus 179 ~~~~~~~~~~gv~v~~~~~~~~------~~~~~~~y~~~~-~-~~~~~~~f~~~~~~~l~~~~------~~pDVIh~~~~ 244 (596)
..++|......+++++...... -.....+|+++. . .+.+..++..+..+.+.... .+.-+-|+++.
T Consensus 194 ~lrlW~a~~~~~~~~l~~~n~~e~~~~~~~iT~~LYp~Ds~elRl~Qeyfl~~agvq~I~~~~~~~~~~~~~~~~~lNdt 273 (750)
T COG0058 194 TLRLWQAQVGRVPLYLLDFNVGENKNDARNITRVLYPGDSKELRLKQEYFLGSAGVQDILARGHLEHHDLDVLADHLNDT 273 (750)
T ss_pred EEEEEEEecCccceEeecCCCcccchhhhhHHhhcCCCCcHHHHHhhhheeeeHHHHHHHHHhhhccccccchhhhhcCC
Confidence 7788888877778888774221 111244787762 1 23333445555555444332 45566789998
Q ss_pred ccchHHHHHHH-Hh--------hhccCCCCcEEEEEcCCCCCCc--chhhhhhhcC--CCchhhh------hhhhhcccc
Q 043397 245 QIGALPLLYWD-MY--------QSLSLKKPRIVLTIHNMEHYGE--CRQEQLSKCG--LDGSIYA------SVEKAIDDR 305 (596)
Q Consensus 245 ~~~~~~~~~~~-~~--------~~~~~~~~pvv~tiH~~~~~~~--~~~~~~~~~~--~~~~~~~------~~~~~~~~~ 305 (596)
|++++..-+.+ +. .+......-+++|.|+..+.+. ++...+.+.. ....++. ...+...+.
T Consensus 274 Hpa~~i~ElmRll~d~~g~~~~~A~~~~~~~~~yTnHTplpeale~wp~~l~~~~lpr~~~ii~~in~~~l~~~~~~~~~ 353 (750)
T COG0058 274 HPALAIPELMRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEALETWPVELFKKLLPRHLQIIYEINARFLPEVRLLYLG 353 (750)
T ss_pred ChhHhHHHHHHHHHHHhcCCHHHHHHHHhheeeeecCCCchhhhccCCHHHHHHHhhhhhhhHHHHHhhhhHHHHhhccc
Confidence 87665443322 11 1112334568999999987553 2222221110 1111110 001110000
Q ss_pred --ccCCCc-ccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCC
Q 043397 306 --TIGHNP-ERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQ 382 (596)
Q Consensus 306 --~~~~~~-~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~ 382 (596)
.-...+ +-++|...+++.|..+..||.-+.+.+.+ -|+.......+.+|.-+.|||.+..|....-+.+-..++..
T Consensus 354 ~~~~~~~~i~~v~Ma~lal~~S~~vNGVsklH~el~k~-~~~~~~~~~~p~~i~nvTNGIt~rrWl~~~n~~L~~~~~~~ 432 (750)
T COG0058 354 DLIRRGSPIEEVNMAVLALVGSHSVNGVSKLHSELSKK-MWFADFHGLYPEKINNVTNGITPRRWLAPANPGLADLLDEK 432 (750)
T ss_pred cccccCCcccceehhhhhhhhhhhhHhHHHHHHHHHHH-HHHHHhcccCccccccccCCcCCchhhhhhhHHHHHHHhhh
Confidence 000000 11677778888899999999776665543 24455555667899999999999887433222111111111
Q ss_pred --------------------------Cc-hhhhhhH----HHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHH
Q 043397 383 --------------------------KP-EGKKICK----YYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRA 431 (596)
Q Consensus 383 --------------------------~~-~~k~~~k----~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l 431 (596)
.+ ..|...| ..+.+..|+..+++...++++-|+..+|+.++.+.-+.++
T Consensus 433 ig~~W~~~~~~l~~l~~~a~~~~~~e~i~~iK~~nk~~La~~i~~~~gi~~~p~~lfd~~~kRiheYKRq~Lnl~~i~~l 512 (750)
T COG0058 433 IGDEWLNDLDILDELLWFADDKAFRELIAEIKRENKKRLAEEIADRTGIEVDPNALFDGQARRIHEYKRQLLNLLDIERL 512 (750)
T ss_pred hhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCccCCCcceeeeehhhhhhhhhHHhHhhHHHH
Confidence 01 1233333 3344456777778899999999999999988887666555
Q ss_pred HH-------cCCEEEEEecCCCCcc-----hHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCC--CCCCc
Q 043397 432 EE-------LGGQMILLGNSPVHWV-----QKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSI--YEPCG 497 (596)
Q Consensus 432 ~~-------~~~~lvIvG~~~~g~~-----~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~--~E~~g 497 (596)
.+ +.+++++.|++-.+.+ ...+...++..+...+|.|+..++-.....++.+|||....|. .|.+|
T Consensus 513 y~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~nYdvslA~~iipa~Dvweqis~a~~EASG 592 (750)
T COG0058 513 YRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFLPNYDVSLAELLIPAADVWEQIPTAGKEASG 592 (750)
T ss_pred HHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEeCCCChhHHHhhcccccccccCCCCCccccC
Confidence 33 3467778888422221 2233444555555567999999999999999999999998886 59999
Q ss_pred hHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeC
Q 043397 498 LAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEG 541 (596)
Q Consensus 498 l~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~ 541 (596)
.+-|-+|..|.+.|++--|...|+.+... +.|||+|-.
T Consensus 593 TsnMK~alNGaltigtlDGanvEi~e~vg------~~N~~~fG~ 630 (750)
T COG0058 593 TSNMKAALNGALTLGTLDGANVEIYEHVG------GENGWIFGE 630 (750)
T ss_pred cCcchHHhcCCceeeccccHHHHHHHhcC------CCceEEeCC
Confidence 99999999999999999999999997432 689999954
No 108
>PRK14986 glycogen phosphorylase; Provisional
Probab=99.27 E-value=1.3e-09 Score=120.51 Aligned_cols=298 Identities=18% Similarity=0.169 Sum_probs=185.5
Q ss_pred CCcEEEEcCCccchHHHHHHHHhh---------hccCCCCcEEEEEcCCCCCCc--chhhhhhhcC--CCc---h----h
Q 043397 235 QPDIIHVHEWQIGALPLLYWDMYQ---------SLSLKKPRIVLTIHNMEHYGE--CRQEQLSKCG--LDG---S----I 294 (596)
Q Consensus 235 ~pDVIh~~~~~~~~~~~~~~~~~~---------~~~~~~~pvv~tiH~~~~~~~--~~~~~~~~~~--~~~---~----~ 294 (596)
.+-+||+++.|++++..-+.+... ++...+.-+++|-|+..+.+. ++...+.+.- ... . +
T Consensus 313 ~~v~ihlNDtHpa~~i~ElmR~L~d~~gl~~~eA~~iv~~~~~fTnHT~lpealE~w~~~l~~~~lpr~l~Ii~eIn~~f 392 (815)
T PRK14986 313 DKIAIHLNDTHPVLSIPELMRLLIDEHKFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQIIFEINDYF 392 (815)
T ss_pred cccEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhEEeecccCChHHhCcCCHHHHHHHccHhhhHHHHHHHHH
Confidence 566999999998665543332211 122345678999999987543 3333322211 000 0 0
Q ss_pred hhhhhhhc-------ccc-ccCC-CcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCC
Q 043397 295 YASVEKAI-------DDR-TIGH-NPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTV 365 (596)
Q Consensus 295 ~~~~~~~~-------~~~-~~~~-~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~ 365 (596)
...+.+.+ ... .+.. ..+.++|...|+..|..|-.||.-+.+.+.+.- +..+...-+.++.-|.|||...
T Consensus 393 l~~~~~~~~~~~~~~~~~sii~~~~~~~v~Ma~LAl~~S~~vNGVS~lH~evl~~~~-f~df~~l~P~kf~niTNGV~~r 471 (815)
T PRK14986 393 LKTLQEQYPNDTDLLGRASIIDESNGRRVRMAWLAVVVSHKVNGVSELHSNLMVQSL-FADFAKIFPGRFCNVTNGVTPR 471 (815)
T ss_pred HHHHHHhCCCcHHHHhhhhccccCCCCEEeeHHHHhhccchhhHHHHHHHHHHHHHH-HHHHHhhCCCcccccCCCCChh
Confidence 11110111 000 0111 123678888999999999999987666543221 2223344577788899999988
Q ss_pred CcCCCCc--------CCCcc-------------ccCC--C----CchhhhhhH----HHHHhhcCCCCCCCccEEEEEec
Q 043397 366 IWNPATD--------AFLPA-------------KFHA--Q----KPEGKKICK----YYIQKGLGLKSEGTVPLVVCITR 414 (596)
Q Consensus 366 ~~~p~~~--------~~~~~-------------~~~~--~----~~~~k~~~k----~~~~~~l~l~~~~~~~~il~iGr 414 (596)
.|-.... ..++. ++.. . ..+.|...| ..++++.|...+++...++++-|
T Consensus 472 rWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~d~~f~~~l~~vk~~nK~~L~~~i~~~~g~~ldp~sLfd~qakR 551 (815)
T PRK14986 472 RWLALANPSLSAVLDEHIGRTWRTDLSQLSELKQHCDYPMVNHAVRQAKLENKKRLAEYIAQQLNVVVNPKALFDVQIKR 551 (815)
T ss_pred hHhhhcCHHHHHHHHHhcCchhhhChHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcccceeeeehh
Confidence 7752111 11110 0000 0 112233333 34456678877789999999999
Q ss_pred ccccCCHHH-HHHHHHHH---HH-c-----CCEEEEEecCCCCcch-HHHH----HHHHHc----CCCC--cEEEEeccC
Q 043397 415 LVAQKGLHL-ITHAIKRA---EE-L-----GGQMILLGNSPVHWVQ-KDFE----DLANLH----NKGT--STRILLMYS 473 (596)
Q Consensus 415 l~~~KGi~~-ll~A~~~l---~~-~-----~~~lvIvG~~~~g~~~-~~l~----~~~~~~----~~~~--~V~~~g~~~ 473 (596)
+..+|+..+ ++..+.++ ++ + +.++++.|++-.|... ..+. .+++-. ...+ +|.|+..++
T Consensus 552 ~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~in~Dp~v~~~lkVVFlenY~ 631 (815)
T PRK14986 552 IHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLKVVFIPNYS 631 (815)
T ss_pred hhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhccChhhcCceeEEEeCCCC
Confidence 999999999 76665554 33 2 4689999985333322 2222 333311 1223 699999999
Q ss_pred HHHHHHHHHhCCEEEEcCC--CCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEE
Q 043397 474 EELSHMLYAAADIVLVPSI--YEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVF 539 (596)
Q Consensus 474 ~~~l~~~~a~aDi~l~PS~--~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv 539 (596)
-+....++.+||+...-|. .|.+|..-|-+|..|++.+++--|...|+.++.. +.|||.|
T Consensus 632 vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e~vG------~eN~~~f 693 (815)
T PRK14986 632 VSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVG------EENIFIF 693 (815)
T ss_pred HHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHHhcC------CCcEEEe
Confidence 9999999999999998887 5999999999999999999999999888887421 2466666
No 109
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.26 E-value=2.6e-09 Score=118.39 Aligned_cols=287 Identities=18% Similarity=0.159 Sum_probs=183.0
Q ss_pred CCcEEEEcCCccchHHH-HHHHHhh--------hccCCCCcEEEEEcCCCCCCc--chhhhhhhcCCCchhhh---hh--
Q 043397 235 QPDIIHVHEWQIGALPL-LYWDMYQ--------SLSLKKPRIVLTIHNMEHYGE--CRQEQLSKCGLDGSIYA---SV-- 298 (596)
Q Consensus 235 ~pDVIh~~~~~~~~~~~-~~~~~~~--------~~~~~~~pvv~tiH~~~~~~~--~~~~~~~~~~~~~~~~~---~~-- 298 (596)
++.+||+++.|++++.. ++..+.. ++.....-+++|-|+..+.+. ++...+.+. ++ ..+. .+
T Consensus 300 ~~~~ihlNDtHpalai~ElmR~L~d~~gl~w~~Aw~i~~~~~~yTnHT~lpealE~wp~~l~~~~-lp-r~~~II~~In~ 377 (797)
T cd04300 300 DKVAIQLNDTHPALAIPELMRILVDEEGLDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFERL-LP-RHLEIIYEINR 377 (797)
T ss_pred CceEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhheeeecCCCchHHhCccCHHHHHHH-Ch-HHHHHHHHHHH
Confidence 78999999999765544 3322221 222345678999999987543 332222211 11 1111 00
Q ss_pred ------hhhc--------cccccCC-CcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCC
Q 043397 299 ------EKAI--------DDRTIGH-NPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGID 363 (596)
Q Consensus 299 ------~~~~--------~~~~~~~-~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid 363 (596)
...+ .-..+.. ....++|...|+..|..|-.||.-+.+.+.+. .+..+...-+.++.-+.|||.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~l~ii~~~~~~~v~Ma~LAi~~S~~vNGVS~lH~ei~k~~-~~~df~~l~P~kf~n~TNGVt 456 (797)
T cd04300 378 RFLEEVRAKYPGDEDRIRRMSIIEEGGEKQVRMAHLAIVGSHSVNGVAALHSELLKET-VFKDFYELYPEKFNNKTNGIT 456 (797)
T ss_pred HHHHHHHHhcCCCHHHHHhhcccccCCCCEEehHHHHHhcCcchhhhHHHHHHHHHHh-hHHHHHhhCCCccCCcCCCCC
Confidence 0000 0001111 12367888899999999999998776665543 133344455788889999999
Q ss_pred CCCcCCCCc--------CCCcc-------------ccC----------CCCchhhhhhHHHHHhhcCCCCCCCccEEEEE
Q 043397 364 TVIWNPATD--------AFLPA-------------KFH----------AQKPEGKKICKYYIQKGLGLKSEGTVPLVVCI 412 (596)
Q Consensus 364 ~~~~~p~~~--------~~~~~-------------~~~----------~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~i 412 (596)
...|-.... ..++. .+. ..+...|..-...++++.|...+++....+++
T Consensus 457 ~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~l~~~K~~nK~~L~~~i~~~~g~~ldp~slfdvq~ 536 (797)
T cd04300 457 PRRWLLQANPGLSALITETIGDDWVTDLDQLKKLEPFADDPAFLKEFRAIKQANKERLAAYIKKTTGVEVDPDSLFDVQV 536 (797)
T ss_pred cchhhhhcCHHHHHHHHHhcCchhhhChHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCccEEEEe
Confidence 987752111 11110 011 11122333334455667788778999999999
Q ss_pred ecccccCCHHH-HHHHHHH---HHH-c-----CCEEEEEecCCCCcch-HHHHHH----HHHcC----CCC--cEEEEec
Q 043397 413 TRLVAQKGLHL-ITHAIKR---AEE-L-----GGQMILLGNSPVHWVQ-KDFEDL----ANLHN----KGT--STRILLM 471 (596)
Q Consensus 413 Grl~~~KGi~~-ll~A~~~---l~~-~-----~~~lvIvG~~~~g~~~-~~l~~~----~~~~~----~~~--~V~~~g~ 471 (596)
-|+..+|+..+ ++..+.+ +++ + +.++++.|++..|... ..+.++ ++..+ +.+ +|.|+..
T Consensus 537 KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~~~lkVVFlen 616 (797)
T cd04300 537 KRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPDVGDKLKVVFLPN 616 (797)
T ss_pred eechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhcCCceEEEEeCC
Confidence 99999999999 6666544 443 2 3688889985334322 233333 33211 223 6999999
Q ss_pred cCHHHHHHHHHhCCEEEEcCC--CCCCchHHHHHHhcCCceEEeCCCCccccccc
Q 043397 472 YSEELSHMLYAAADIVLVPSI--YEPCGLAQMIGMRYGAVPVVRKTGGLADTVFD 524 (596)
Q Consensus 472 ~~~~~l~~~~a~aDi~l~PS~--~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~ 524 (596)
++-.....++.+||+...-|. .|.+|..-|-+|..|++.+++--|...|+.++
T Consensus 617 Y~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~e~ 671 (797)
T cd04300 617 YNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEE 671 (797)
T ss_pred CChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHHHH
Confidence 999999999999999998886 59999999999999999999999998888765
No 110
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=99.26 E-value=7.3e-10 Score=122.11 Aligned_cols=289 Identities=17% Similarity=0.144 Sum_probs=183.6
Q ss_pred CCcEEEEcCCccchHHHHHHH-Hhh--------hccCCCCcEEEEEcCCCCCCc--chhhhhhhc---------CCCchh
Q 043397 235 QPDIIHVHEWQIGALPLLYWD-MYQ--------SLSLKKPRIVLTIHNMEHYGE--CRQEQLSKC---------GLDGSI 294 (596)
Q Consensus 235 ~pDVIh~~~~~~~~~~~~~~~-~~~--------~~~~~~~pvv~tiH~~~~~~~--~~~~~~~~~---------~~~~~~ 294 (596)
++.+||+++.|++++..-+.+ +.. ++.....-+++|-|+..+.+. ++...+.+. ++...+
T Consensus 297 ~~~~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~wp~~l~~~~Lpr~~~iI~~In~~f 376 (794)
T TIGR02093 297 KKVAIQLNDTHPALAIPELMRLLIDEEGMDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFQKLLPRHLEIIYEINRRF 376 (794)
T ss_pred cceEEEecCCchHHHHHHHHHHHHHhcCCCHHHHHHHHHhheecccCCCChHHhCCcCHHHHHHHHhHHHHHHHHHhHHH
Confidence 788999999998665443322 211 122345678999999987543 333222210 011101
Q ss_pred hhhhhhhcc-------c-cccCCC-cccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCC
Q 043397 295 YASVEKAID-------D-RTIGHN-PERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTV 365 (596)
Q Consensus 295 ~~~~~~~~~-------~-~~~~~~-~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~ 365 (596)
......... . ..+... .+.++|...|+..|..|-.||+-+.+.+++.- +..++..-+.++.-+.|||.+.
T Consensus 377 l~~~~~~~p~d~~~~~~~sii~~~~~~~v~Ma~LAi~~S~~vNGVS~lH~eilk~~~-~~df~~l~P~kf~n~TNGVt~r 455 (794)
T TIGR02093 377 LAELAAKGPGDEAKIRRMSIIEEGQSKRVRMANLAIVGSHSVNGVAALHTELLKEDL-LKDFYELYPEKFNNKTNGITPR 455 (794)
T ss_pred HHHHHHhCCCcHHHHhheeeeecCCCCEEehHHHHHHhhhhhhhhHHHHHHHHHHHH-HHHHHhhCCCccCCcCCCCCcc
Confidence 110000000 0 011111 23688888999999999999987776655321 2333445578888999999998
Q ss_pred CcCCCCcC--------CCcc-------------ccCC----------CCchhhhhhHHHHHhhcCCCCCCCccEEEEEec
Q 043397 366 IWNPATDA--------FLPA-------------KFHA----------QKPEGKKICKYYIQKGLGLKSEGTVPLVVCITR 414 (596)
Q Consensus 366 ~~~p~~~~--------~~~~-------------~~~~----------~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGr 414 (596)
.|-....+ .++. .+.. .+...|..-...++++.|...+++....+++-|
T Consensus 456 rWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~l~~vK~~nK~~L~~~i~~~~g~~ldp~slfdvq~KR 535 (794)
T TIGR02093 456 RWLRLANPGLSALLTETIGDDWLTDLDLLKKLEPYADDSEFLEEFRQVKQANKQRLAAYIKEHTGVEVDPNSIFDVQVKR 535 (794)
T ss_pred chhhhcCHHHHHHHHHhcCchhhhcHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccccchhhhee
Confidence 77522111 1110 0101 111223333445566778877789999999999
Q ss_pred ccccCCHHH-HHHHHHHH---HH-c-----CCEEEEEecCCCCcch-HHHHHHHHHcC--------CCC--cEEEEeccC
Q 043397 415 LVAQKGLHL-ITHAIKRA---EE-L-----GGQMILLGNSPVHWVQ-KDFEDLANLHN--------KGT--STRILLMYS 473 (596)
Q Consensus 415 l~~~KGi~~-ll~A~~~l---~~-~-----~~~lvIvG~~~~g~~~-~~l~~~~~~~~--------~~~--~V~~~g~~~ 473 (596)
+..+|+..+ ++..+.++ ++ + +.++++.|++..|... ..+.+++.... ..+ +|.|+..++
T Consensus 536 ~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v~~~lkVVFlenY~ 615 (794)
T TIGR02093 536 LHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVVNNDPAVGDKLKVVFVPNYN 615 (794)
T ss_pred chhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCcHHHHHHHHHHHHHHHHhccChhhCCceeEEEeCCCC
Confidence 999999999 66665554 33 2 4588999985434322 33344443322 233 699999999
Q ss_pred HHHHHHHHHhCCEEEEcCC--CCCCchHHHHHHhcCCceEEeCCCCccccccc
Q 043397 474 EELSHMLYAAADIVLVPSI--YEPCGLAQMIGMRYGAVPVVRKTGGLADTVFD 524 (596)
Q Consensus 474 ~~~l~~~~a~aDi~l~PS~--~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~ 524 (596)
-.....++.+||+...-|. .|.+|..-|-+|..|++.|++--|...|+.++
T Consensus 616 VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~e~ 668 (794)
T TIGR02093 616 VSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIREE 668 (794)
T ss_pred hHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHHHH
Confidence 9999999999999998886 59999999999999999999998998888865
No 111
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.18 E-value=9.5e-10 Score=116.59 Aligned_cols=178 Identities=10% Similarity=0.012 Sum_probs=130.0
Q ss_pred cccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCC
Q 043397 322 VYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLK 401 (596)
Q Consensus 322 ~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~ 401 (596)
...|.||+.++...+.+... +. +..++.++|-|+=.. + +..
T Consensus 238 ~~~~~iIv~T~~q~~di~~r------~~-~~~~~~~ip~g~i~~-~-~~~------------------------------ 278 (438)
T TIGR02919 238 TRNKKIIIPNKNEYEKIKEL------LD-NEYQEQISQLGYLYP-F-KKD------------------------------ 278 (438)
T ss_pred cccCeEEeCCHHHHHHHHHH------hC-cccCceEEEEEEEEe-e-ccc------------------------------
Confidence 34689999997766665422 11 245677777775421 1 110
Q ss_pred CCCCccEEEEEecccccCCHHHHHHHHHHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHH
Q 043397 402 SEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHM 479 (596)
Q Consensus 402 ~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~ 479 (596)
+.....+++++. +..|++++++.+ |+++|.| |-. .++...+.++ +++ ++++....+....+.+
T Consensus 279 -~r~~~~~l~~t~-------s~~I~~i~~Lv~~lPd~~f~I-ga~--te~s~kL~~L-~~y---~nvvly~~~~~~~l~~ 343 (438)
T TIGR02919 279 -NKYRKQALILTN-------SDQIEHLEEIVQALPDYHFHI-AAL--TEMSSKLMSL-DKY---DNVKLYPNITTQKIQE 343 (438)
T ss_pred -cCCcccEEEECC-------HHHHHHHHHHHHhCCCcEEEE-Eec--CcccHHHHHH-Hhc---CCcEEECCcChHHHHH
Confidence 023345666662 889999999866 8999999 651 2335778777 665 5666665555556899
Q ss_pred HHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCC-CccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhc
Q 043397 480 LYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTG-GLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHF 558 (596)
Q Consensus 480 ~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~g-g~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~ 558 (596)
+|..||+++..|..|+++++++||+..|+|+|+.+.- |..+++. .|.+++.+|+++|+++|.++++
T Consensus 344 ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~-----------~g~l~~~~~~~~m~~~i~~lL~-- 410 (438)
T TIGR02919 344 LYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNRDFIA-----------SENIFEHNEVDQLISKLKDLLN-- 410 (438)
T ss_pred HHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCccccc-----------CCceecCCCHHHHHHHHHHHhc--
Confidence 9999999999999999999999999999999997655 4556663 3889999999999999999998
Q ss_pred cCCHHHHHHH
Q 043397 559 IDKPEEWNRI 568 (596)
Q Consensus 559 ~~~~~~~~~~ 568 (596)
+++.+++.
T Consensus 411 --d~~~~~~~ 418 (438)
T TIGR02919 411 --DPNQFREL 418 (438)
T ss_pred --CHHHHHHH
Confidence 88766554
No 112
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.17 E-value=1.1e-10 Score=96.69 Aligned_cols=89 Identities=22% Similarity=0.352 Sum_probs=80.2
Q ss_pred EEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHH
Q 043397 486 IVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEW 565 (596)
Q Consensus 486 i~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~ 565 (596)
+++.|+..+++++.++|+||||+|+|+.+.+++.+++.+ +.+++.++ |++++.++|..+++ ||+++
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~--------~~~~~~~~--~~~el~~~i~~ll~----~~~~~ 66 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSPGLREIFED--------GEHIITYN--DPEELAEKIEYLLE----NPEER 66 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChHHHHHHcCC--------CCeEEEEC--CHHHHHHHHHHHHC----CHHHH
Confidence 467888899999999999999999999999999999987 66888887 89999999999998 99999
Q ss_pred HHHHHHHHH---hcCCHHHHHHHHHH
Q 043397 566 NRIVQKIME---NDNSWNNAAGKYME 588 (596)
Q Consensus 566 ~~~~~~~~~---~~fs~~~~~~~~~~ 588 (596)
+++++++.+ .+|+|+..++++++
T Consensus 67 ~~ia~~a~~~v~~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 67 RRIAKNARERVLKRHTWEHRAEQILE 92 (92)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHC
Confidence 999977655 79999999999864
No 113
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=99.15 E-value=2.7e-09 Score=117.49 Aligned_cols=287 Identities=18% Similarity=0.155 Sum_probs=179.2
Q ss_pred CCcEEEEcCCccchHHHH-HHHHhh--------hccCCCCcEEEEEcCCCCCCc--chhhhhhhcCCCchhhh---hh--
Q 043397 235 QPDIIHVHEWQIGALPLL-YWDMYQ--------SLSLKKPRIVLTIHNMEHYGE--CRQEQLSKCGLDGSIYA---SV-- 298 (596)
Q Consensus 235 ~pDVIh~~~~~~~~~~~~-~~~~~~--------~~~~~~~pvv~tiH~~~~~~~--~~~~~~~~~~~~~~~~~---~~-- 298 (596)
++.+||+++.|++++..- +..+.. ++...+.-+++|-|+..+.+. ++...+.+. ++ ..+. .+
T Consensus 302 ~~~~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~w~~~l~~~~-Lp-r~~~ii~~in~ 379 (798)
T PRK14985 302 DYEVIQLNDTHPTIAIPELLRVLLDEHQLSWDDAWAITSKTFAYTNHTLMPEALECWDEKLVKSL-LP-RHMQIIKEINT 379 (798)
T ss_pred CCcEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHheeeecCCCChhhhCCCCHHHHHHH-hH-HHHHHHHHHHH
Confidence 788999999998665443 322221 222345678999999987543 333222211 11 1111 00
Q ss_pred ------hhhccc------cccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCC
Q 043397 299 ------EKAIDD------RTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVI 366 (596)
Q Consensus 299 ------~~~~~~------~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~ 366 (596)
...+.. +.....-+.++|...|+..|..|-.||.-+.+.+.+.- +..+...-+.++.-+.|||....
T Consensus 380 ~fl~~~~~~~~~d~~~~~~~sii~~~~v~Ma~LAi~~S~~vNGVS~lH~eil~~~~-f~df~~l~p~kf~nvTNGVt~rr 458 (798)
T PRK14985 380 RFKTLVEKTWPGDKKVWAKLAVVHDKQVRMANLCVVSGFAVNGVAALHSDLVVKDL-FPEYHQLWPNKFHNVTNGITPRR 458 (798)
T ss_pred HHHHHHHHhCCCcHHHhhhhhhccCCeeehHHHHHHhcchhHhhHHHHhchhHHhh-hhhhHhhCCCccCCcCCCcCcch
Confidence 000000 00000013577888888888888888876655443321 23334444778889999999988
Q ss_pred cC----CCC----cCCCcc-------------ccCC-CC-----chhh----hhhHHHHHhhcCCCCCCCccEEEEEecc
Q 043397 367 WN----PAT----DAFLPA-------------KFHA-QK-----PEGK----KICKYYIQKGLGLKSEGTVPLVVCITRL 415 (596)
Q Consensus 367 ~~----p~~----~~~~~~-------------~~~~-~~-----~~~k----~~~k~~~~~~l~l~~~~~~~~il~iGrl 415 (596)
|- |.- +..++. .+.. .. .+.| ..-.+.++++.|...+++...++++-|+
T Consensus 459 Wl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L~~~i~~~~g~~ldp~slfdvq~kR~ 538 (798)
T PRK14985 459 WIKQCNPALAALLDKTLKKEWANDLDQLINLEKYADDAAFRQQYREIKQANKVRLAEFVKQRTGIEINPQAIFDVQIKRL 538 (798)
T ss_pred hhhhhCHHHHHHHHHhcCcchhhChHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCchhcchhhHhhh
Confidence 84 211 111110 1111 01 1223 3333445667788777889999999999
Q ss_pred cccCCHHH-HHHHHHHHHH----c-----CCEEEEEecCCCCcch-HHHHHH----HHHcCC----CC--cEEEEeccCH
Q 043397 416 VAQKGLHL-ITHAIKRAEE----L-----GGQMILLGNSPVHWVQ-KDFEDL----ANLHNK----GT--STRILLMYSE 474 (596)
Q Consensus 416 ~~~KGi~~-ll~A~~~l~~----~-----~~~lvIvG~~~~g~~~-~~l~~~----~~~~~~----~~--~V~~~g~~~~ 474 (596)
..+|+..+ ++..+.++.+ + +.++++.|++-.|... ..+.++ ++..+. .+ +|.|+..++-
T Consensus 539 heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~~~lkVVFlenY~V 618 (798)
T PRK14985 539 HEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAEVINNDPLVGDKLKVVFLPDYCV 618 (798)
T ss_pred hhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhcCChhhCCceeEEEeCCCCh
Confidence 99999999 7777655533 2 3688999985334322 233333 322222 23 6999999999
Q ss_pred HHHHHHHHhCCEEEEcCC--CCCCchHHHHHHhcCCceEEeCCCCccccccc
Q 043397 475 ELSHMLYAAADIVLVPSI--YEPCGLAQMIGMRYGAVPVVRKTGGLADTVFD 524 (596)
Q Consensus 475 ~~l~~~~a~aDi~l~PS~--~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~ 524 (596)
.....++.+||+...-|. .|.+|..-|-+|..|++.|++--|...|+.++
T Consensus 619 slAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e~ 670 (798)
T PRK14985 619 SAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQ 670 (798)
T ss_pred HHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHHH
Confidence 999999999999998886 59999999999999999999998998887764
No 114
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.06 E-value=3.9e-07 Score=96.42 Aligned_cols=210 Identities=12% Similarity=0.003 Sum_probs=127.8
Q ss_pred ccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCC
Q 043397 321 IVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGL 400 (596)
Q Consensus 321 ~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l 400 (596)
.+.||.|.+..+...+.+...| .++.++-|.+-....... + . ++
T Consensus 158 ~~~a~~v~~~~~~t~~~l~~~g----------~k~~~vGnPv~d~l~~~~--------------------~----~--~l 201 (396)
T TIGR03492 158 SRRCLAVFVRDRLTARDLRRQG----------VRASYLGNPMMDGLEPPE--------------------R----K--PL 201 (396)
T ss_pred chhhCEEeCCCHHHHHHHHHCC----------CeEEEeCcCHHhcCcccc--------------------c----c--cc
Confidence 4568888888877666654332 477777776543322111 0 0 22
Q ss_pred CCCCCcc-EEEEEecc--cccCCHHHHHHHHHHHHH-cCCEEEEEe-cCCCCcchHHHHHHHHHcCCC------------
Q 043397 401 KSEGTVP-LVVCITRL--VAQKGLHLITHAIKRAEE-LGGQMILLG-NSPVHWVQKDFEDLANLHNKG------------ 463 (596)
Q Consensus 401 ~~~~~~~-~il~iGrl--~~~KGi~~ll~A~~~l~~-~~~~lvIvG-~~~~g~~~~~l~~~~~~~~~~------------ 463 (596)
. ++.+ +++..|.- ...+++..++++++.+.+ +++++++.- + +...+.+++..++.+..
T Consensus 202 ~--~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~---~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 276 (396)
T TIGR03492 202 L--TGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVP---SLSLEKLQAILEDLGWQLEGSSEDQTSLF 276 (396)
T ss_pred C--CCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCC---CCCHHHHHHHHHhcCceecCCccccchhh
Confidence 2 3333 44555654 345678899999999864 467776543 3 34456666655544432
Q ss_pred --CcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCcccc---ccccCCCCCCCccceEE
Q 043397 464 --TSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADT---VFDVDDPSNHEKANGFV 538 (596)
Q Consensus 464 --~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~---i~~~~~~~~~~~~~G~l 538 (596)
+++.+..++.+ +..+|++||++|.. .|.+..|++++|+|+|.....+.... .+.. ..- .+.++.
T Consensus 277 ~~~~~~v~~~~~~--~~~~l~~ADlvI~r-----SGt~T~E~a~lg~P~Ilip~~~~q~na~~~~~~---~~l-~g~~~~ 345 (396)
T TIGR03492 277 QKGTLEVLLGRGA--FAEILHWADLGIAM-----AGTATEQAVGLGKPVIQLPGKGPQFTYGFAEAQ---SRL-LGGSVF 345 (396)
T ss_pred ccCceEEEechHh--HHHHHHhCCEEEEC-----cCHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhh---Hhh-cCCEEe
Confidence 23566655544 88999999999987 45666999999999999764332211 1110 000 023444
Q ss_pred EeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH---hcCCHHHHHHHH
Q 043397 539 FEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME---NDNSWNNAAGKY 586 (596)
Q Consensus 539 v~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~ 586 (596)
+...|++.+++++.++++ |++.+++|.++..+ ....-+++++.+
T Consensus 346 l~~~~~~~l~~~l~~ll~----d~~~~~~~~~~~~~~lg~~~a~~~ia~~i 392 (396)
T TIGR03492 346 LASKNPEQAAQVVRQLLA----DPELLERCRRNGQERMGPPGASARIAESI 392 (396)
T ss_pred cCCCCHHHHHHHHHHHHc----CHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 455678999999999998 88888887743332 234444454443
No 115
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=99.05 E-value=1.1e-08 Score=94.83 Aligned_cols=180 Identities=18% Similarity=0.168 Sum_probs=112.8
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeC
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVS 188 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (596)
-||++|.+.-.|. ..||.|+++.+|+..|.++||+|+|.|.......+ ....+
T Consensus 2 kkIaIiGtrGIPa-~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~--------------------------~~~y~ 54 (185)
T PF09314_consen 2 KKIAIIGTRGIPA-RYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYK--------------------------EFEYN 54 (185)
T ss_pred ceEEEEeCCCCCc-ccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCC--------------------------CcccC
Confidence 3799999887776 79999999999999999999999999954222111 11247
Q ss_pred CeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHH---HhhCCCCcEEEEcCCcc-chHHHHHHHHhhhccCCC
Q 043397 189 SIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWM---QVTGVQPDIIHVHEWQI-GALPLLYWDMYQSLSLKK 264 (596)
Q Consensus 189 gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l---~~~~~~pDVIh~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (596)
|+.+..++.+..- ..........++...+ +....+.||||++.... +++..+++.. +..+
T Consensus 55 gv~l~~i~~~~~g------------~~~si~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~~----~~~g 118 (185)
T PF09314_consen 55 GVRLVYIPAPKNG------------SAESIIYDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFLRKL----RKKG 118 (185)
T ss_pred CeEEEEeCCCCCC------------chHHHHHHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHHHhh----hhcC
Confidence 8888887732110 0122222233333333 33335788999887553 2232222221 1246
Q ss_pred CcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchh
Q 043397 265 PRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWL 344 (596)
Q Consensus 265 ~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l 344 (596)
.|+++++|+.++. ..+++...+.+-. ..++.+.++||.+|+-|+...+.+.+.
T Consensus 119 ~~v~vN~DGlEWk-------R~KW~~~~k~~lk-----------------~~E~~avk~ad~lIaDs~~I~~y~~~~--- 171 (185)
T PF09314_consen 119 GKVVVNMDGLEWK-------RAKWGRPAKKYLK-----------------FSEKLAVKYADRLIADSKGIQDYIKER--- 171 (185)
T ss_pred CcEEECCCcchhh-------hhhcCHHHHHHHH-----------------HHHHHHHHhCCEEEEcCHHHHHHHHHH---
Confidence 7999999987751 1122222222111 224556788999999999999986533
Q ss_pred hhhhhccCCcEEEeeCCCC
Q 043397 345 ASVLITHRDKYFGILNGID 363 (596)
Q Consensus 345 ~~~~~~~~~ki~vI~nGid 363 (596)
++ ..+..+|++|.|
T Consensus 172 ---y~--~~~s~~IaYGad 185 (185)
T PF09314_consen 172 ---YG--RKKSTFIAYGAD 185 (185)
T ss_pred ---cC--CCCcEEecCCCC
Confidence 22 477889999986
No 116
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=99.01 E-value=2.9e-08 Score=108.50 Aligned_cols=298 Identities=18% Similarity=0.172 Sum_probs=168.7
Q ss_pred CCcEEEEcCCccchHHHHHHHH-hh--------hccCCCCcEEEEEcCCCCCCc--chhhhhhhcCCCc----------h
Q 043397 235 QPDIIHVHEWQIGALPLLYWDM-YQ--------SLSLKKPRIVLTIHNMEHYGE--CRQEQLSKCGLDG----------S 293 (596)
Q Consensus 235 ~pDVIh~~~~~~~~~~~~~~~~-~~--------~~~~~~~pvv~tiH~~~~~~~--~~~~~~~~~~~~~----------~ 293 (596)
++-+||+++.|++++..-+.+. .. ++...+.-+++|.|+..+.+. ++...+.+. ++. .
T Consensus 214 ~~~~ihlNdtHpa~ai~ElmR~L~de~gl~~~eA~eiv~~~~~fTnHT~vpealE~wp~~l~~~~-Lpr~~~ii~ein~~ 292 (713)
T PF00343_consen 214 DKVVIHLNDTHPAFAIPELMRILMDEEGLSWDEAWEIVRKTFAFTNHTPVPEALEKWPVDLFERY-LPRHLEIIYEINRR 292 (713)
T ss_dssp HHEEEEEESSTTTTHHHHHHHHHHHTT---HHHHHHHHHHHEEEEE--SSGGGS-EEEHHHHHHH-SHHHHHHHHHHHHH
T ss_pred cceEEeecCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHhceeeeccccccccccccCHHHHHHH-ChHHHHHHHHHhHH
Confidence 3569999999987654433222 11 111223468999999988653 333332210 000 0
Q ss_pred hhhhhhhhcc-------c-ccc-CCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCC
Q 043397 294 IYASVEKAID-------D-RTI-GHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDT 364 (596)
Q Consensus 294 ~~~~~~~~~~-------~-~~~-~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~ 364 (596)
+...+...+. . ..+ ....+.++|...|++.|..+-.||+-+.+.+.+. ++..++...+.++..|.|||..
T Consensus 293 f~~~~~~~~~~d~~~~~~l~ii~~~~~~~~~Ma~LAl~~S~~vNGVS~LH~ev~k~~-~f~~f~~l~P~kf~nvTNGVh~ 371 (713)
T PF00343_consen 293 FLDELRRKYPGDEDQIRRLSIIEEGNSKRFRMANLALRGSHSVNGVSKLHGEVLKQM-VFKDFYELWPEKFGNVTNGVHP 371 (713)
T ss_dssp HHHHHHHHSTT-HHHHHHHSSEETSSSCEEEHHHHHHHCESEEEESSHHHHHHHHHT-TTHHHHHHSGGGEEE----B-T
T ss_pred HHHHHHHHhcCcchhhhhcccccccchhhcchhHHHHHhcccccchHHHHHHHHHHH-HhhhhhhcCCceeeccccCccC
Confidence 0000000000 0 001 1234578899999999999999998776664432 3455566667899999999999
Q ss_pred CCcCCCCcC--------CCcc-------------ccCCCC----------chhhhhhHHHHHhhcCCCCCCCccEEEEEe
Q 043397 365 VIWNPATDA--------FLPA-------------KFHAQK----------PEGKKICKYYIQKGLGLKSEGTVPLVVCIT 413 (596)
Q Consensus 365 ~~~~p~~~~--------~~~~-------------~~~~~~----------~~~k~~~k~~~~~~l~l~~~~~~~~il~iG 413 (596)
..|.....+ .++. .+.... ...|..-.+.+++..+...+++....+++-
T Consensus 372 rrWl~~~nP~L~~L~~~~iG~~W~~d~~~l~~l~~~~dd~~~~~~~~~vK~~~K~rl~~~i~~~~~~~ldp~slfdv~~r 451 (713)
T PF00343_consen 372 RRWLSQANPELSELITEYIGDDWRTDLEQLEKLEKFADDEEFQEELREVKQENKERLAEYIKKRTGVELDPDSLFDVQAR 451 (713)
T ss_dssp CCCCCCTSHHHHHHHHHHHTSGGGCSGGGGGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTSEEEEEES
T ss_pred cccccccCHHHHHHHHHHhccccccCHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhh
Confidence 888532111 1110 010000 112233334445666766668888899999
Q ss_pred cccccCCHHH-HH---HHHHHHHH-c-----CCEEEEEecCCCCcc-hHHHHHHHHHc--------CCCC--cEEEEecc
Q 043397 414 RLVAQKGLHL-IT---HAIKRAEE-L-----GGQMILLGNSPVHWV-QKDFEDLANLH--------NKGT--STRILLMY 472 (596)
Q Consensus 414 rl~~~KGi~~-ll---~A~~~l~~-~-----~~~lvIvG~~~~g~~-~~~l~~~~~~~--------~~~~--~V~~~g~~ 472 (596)
|+..+|+..+ ++ +-+.++++ + ++++++.|++-.+.. -..+.+++.+. .+.+ +|.|+..+
T Consensus 452 R~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP~d~~gK~iIk~I~~va~~in~Dp~v~~~lkVvFlenY 531 (713)
T PF00343_consen 452 RFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHPGDYMGKEIIKLINNVAEVINNDPEVGDRLKVVFLENY 531 (713)
T ss_dssp -SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----TT-HHHHHHHHHHHHHHHHHCT-TTTCCGEEEEEETT-
T ss_pred hcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHHhcChhhccceeEEeecCC
Confidence 9999999888 44 44455554 2 468999998533322 22333333221 1223 69999999
Q ss_pred CHHHHHHHHHhCCEEEEcCC--CCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEe
Q 043397 473 SEELSHMLYAAADIVLVPSI--YEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFE 540 (596)
Q Consensus 473 ~~~~l~~~~a~aDi~l~PS~--~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~ 540 (596)
+-.....++.+|||.+..|. .|.+|..-|-+|..|.+.+++--|...|+.+... ..|.|+|-
T Consensus 532 dvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~vG------~eN~fiFG 595 (713)
T PF00343_consen 532 DVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEAVG------EENIFIFG 595 (713)
T ss_dssp SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH-------GGGSEEES
T ss_pred cHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHhcC------CCcEEEcC
Confidence 99999999999999999886 5999999999999999999999999888876421 35788884
No 117
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=99.00 E-value=5.8e-07 Score=94.18 Aligned_cols=212 Identities=14% Similarity=0.179 Sum_probs=126.3
Q ss_pred cCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeC-CCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCC
Q 043397 324 SNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILN-GIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKS 402 (596)
Q Consensus 324 ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~n-Gid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~ 402 (596)
|+..++.++..++.++..| .+..+|+++-| ++|.-.+... ..+..+.++++++
T Consensus 145 a~l~f~~t~~~~~~L~~eg-------~~~~~i~~tG~~~iD~l~~~~~------------------~~~~~~~~~lgl~- 198 (365)
T TIGR03568 145 SHLHFVATEEYRQRVIQMG-------EDPDRVFNVGSPGLDNILSLDL------------------LSKEELEEKLGID- 198 (365)
T ss_pred HhhccCCCHHHHHHHHHcC-------CCCCcEEEECCcHHHHHHhhhc------------------cCHHHHHHHhCCC-
Confidence 6778888988888887665 34567877755 5553222111 0134566777874
Q ss_pred CCCccE-EEEEeccc--ccC---CHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCC-CCcEEEEeccCHH
Q 043397 403 EGTVPL-VVCITRLV--AQK---GLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNK-GTSTRILLMYSEE 475 (596)
Q Consensus 403 ~~~~~~-il~iGrl~--~~K---Gi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~-~~~V~~~g~~~~~ 475 (596)
.++++ ++.+-+-. ... .+..+++++..+ +...+++.... ++....+.+..+++.. .++|.+.+.++..
T Consensus 199 -~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~---~~~~~vi~P~~-~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~ 273 (365)
T TIGR03568 199 -LDKPYALVTFHPVTLEKESAEEQIKELLKALDEL---NKNYIFTYPNA-DAGSRIINEAIEEYVNEHPNFRLFKSLGQE 273 (365)
T ss_pred -CCCCEEEEEeCCCcccccCchHHHHHHHHHHHHh---ccCCEEEEeCC-CCCchHHHHHHHHHhcCCCCEEEECCCChH
Confidence 33344 33333322 223 344455555443 22334443211 2222223222232221 4689999999999
Q ss_pred HHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHH
Q 043397 476 LSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAF 555 (596)
Q Consensus 476 ~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll 555 (596)
++..+++.||+++-- +.|. +.||.++|+|+|. .+.-++.++. +.+.+++. .|++++.+++.+++
T Consensus 274 ~~l~Ll~~a~~vitd----SSgg-i~EA~~lg~Pvv~--l~~R~e~~~~--------g~nvl~vg-~~~~~I~~a~~~~~ 337 (365)
T TIGR03568 274 RYLSLLKNADAVIGN----SSSG-IIEAPSFGVPTIN--IGTRQKGRLR--------ADSVIDVD-PDKEEIVKAIEKLL 337 (365)
T ss_pred HHHHHHHhCCEEEEc----ChhH-HHhhhhcCCCEEe--ecCCchhhhh--------cCeEEEeC-CCHHHHHHHHHHHh
Confidence 999999999999933 2233 3899999999995 4567777766 56777784 48999999999854
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043397 556 RHFIDKPEEWNRIVQKIMENDNSWNNAAGKYMEI 589 (596)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~i 589 (596)
+++.+..+.. ....|-....+++.+++
T Consensus 338 -----~~~~~~~~~~--~~~pygdg~as~rI~~~ 364 (365)
T TIGR03568 338 -----DPAFKKSLKN--VKNPYGDGNSSERIIEI 364 (365)
T ss_pred -----ChHHHHHHhh--CCCCCCCChHHHHHHHh
Confidence 4443333211 12346556666766654
No 118
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.93 E-value=1.5e-06 Score=89.06 Aligned_cols=230 Identities=17% Similarity=0.105 Sum_probs=149.0
Q ss_pred hhhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHH
Q 043397 315 SLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYI 394 (596)
Q Consensus 315 ~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~ 394 (596)
.+.+..++..|.|++.|+..++++...| ..++.+.-| +..+. .+. .........+
T Consensus 169 ~~~~~~~~~i~li~aQse~D~~Rf~~LG---------a~~v~v~GN-lKfd~-~~~--------------~~~~~~~~~~ 223 (419)
T COG1519 169 FLARLLFKNIDLILAQSEEDAQRFRSLG---------AKPVVVTGN-LKFDI-EPP--------------PQLAAELAAL 223 (419)
T ss_pred HHHHHHHHhcceeeecCHHHHHHHHhcC---------CcceEEecc-eeecC-CCC--------------hhhHHHHHHH
Confidence 4455567778999999999999988766 334555444 11111 111 1223345566
Q ss_pred HhhcCCCCCCCccEEEEEecccccCC-HHHHHHHHHHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCC--------
Q 043397 395 QKGLGLKSEGTVPLVVCITRLVAQKG-LHLITHAIKRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKG-------- 463 (596)
Q Consensus 395 ~~~l~l~~~~~~~~il~iGrl~~~KG-i~~ll~A~~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~-------- 463 (596)
++.++. + +++++..+. ..| -+.+++++..+++ ++..+++|=. ..+-.+.+++++++.|+.
T Consensus 224 r~~l~~---~-r~v~iaaST---H~GEeei~l~~~~~l~~~~~~~llIlVPR--HpERf~~v~~l~~~~gl~~~~rS~~~ 294 (419)
T COG1519 224 RRQLGG---H-RPVWVAAST---HEGEEEIILDAHQALKKQFPNLLLILVPR--HPERFKAVENLLKRKGLSVTRRSQGD 294 (419)
T ss_pred HHhcCC---C-CceEEEecC---CCchHHHHHHHHHHHHhhCCCceEEEecC--ChhhHHHHHHHHHHcCCeEEeecCCC
Confidence 777654 2 788888777 344 4568899999877 5677777765 234456778888877662
Q ss_pred -----CcEEEEeccCHHHHHHHHHhCCEEEEcC-CCCCCchHHHHHHhcCCceEEe-CCCCccccccccCCCCCCCccce
Q 043397 464 -----TSTRILLMYSEELSHMLYAAADIVLVPS-IYEPCGLAQMIGMRYGAVPVVR-KTGGLADTVFDVDDPSNHEKANG 536 (596)
Q Consensus 464 -----~~V~~~g~~~~~~l~~~~a~aDi~l~PS-~~E~~gl~~lEAma~G~pvI~s-~~gg~~e~i~~~~~~~~~~~~~G 536 (596)
.+|.+...+-+ +..+|..||+.++-- ..+-.|--++|+.++|+|+|.. .+-...|+.+.... .+.|
T Consensus 295 ~~~~~tdV~l~DtmGE--L~l~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~-----~ga~ 367 (419)
T COG1519 295 PPFSDTDVLLGDTMGE--LGLLYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIFGPYTFNFSDIAERLLQ-----AGAG 367 (419)
T ss_pred CCCCCCcEEEEecHhH--HHHHHhhccEEEECCcccCCCCCChhhHHHcCCCEEeCCccccHHHHHHHHHh-----cCCe
Confidence 13444445544 889999999988764 4456788899999999999983 33344444433211 3556
Q ss_pred EEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043397 537 FVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIMENDNSWNNAAGKYMEIYN 591 (596)
Q Consensus 537 ~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~iy~ 591 (596)
+.++ |.+.+++++..++. |++.+.+|++++.+---......+++++..+
T Consensus 368 ~~v~--~~~~l~~~v~~l~~----~~~~r~~~~~~~~~~v~~~~gal~r~l~~l~ 416 (419)
T COG1519 368 LQVE--DADLLAKAVELLLA----DEDKREAYGRAGLEFLAQNRGALARTLEALK 416 (419)
T ss_pred EEEC--CHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 6665 67788888888887 8899999987776521222234455554443
No 119
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.90 E-value=6.8e-07 Score=90.04 Aligned_cols=97 Identities=10% Similarity=0.077 Sum_probs=74.5
Q ss_pred ccEEEEEecccccCCHHHHHHHHHHHHHcCCEE-EEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhC
Q 043397 406 VPLVVCITRLVAQKGLHLITHAIKRAEELGGQM-ILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAA 484 (596)
Q Consensus 406 ~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~l-vIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~a 484 (596)
..+++++|..++.+....+++++.++. .+.++ +|+|.. .+..+.+++.++. .+++++++++++ +.++|++|
T Consensus 171 ~~iLi~~GG~d~~~~~~~~l~~l~~~~-~~~~i~vv~G~~--~~~~~~l~~~~~~---~~~i~~~~~~~~--m~~lm~~a 242 (279)
T TIGR03590 171 RRVLVSFGGADPDNLTLKLLSALAESQ-INISITLVTGSS--NPNLDELKKFAKE---YPNIILFIDVEN--MAELMNEA 242 (279)
T ss_pred CeEEEEeCCcCCcCHHHHHHHHHhccc-cCceEEEEECCC--CcCHHHHHHHHHh---CCCEEEEeCHHH--HHHHHHHC
Confidence 457888998888877778888887653 34554 467761 2345677777665 347999998887 99999999
Q ss_pred CEEEEcCCCCCCchHHHHHHhcCCceEEeCC
Q 043397 485 DIVLVPSIYEPCGLAQMIGMRYGAVPVVRKT 515 (596)
Q Consensus 485 Di~l~PS~~E~~gl~~lEAma~G~pvI~s~~ 515 (596)
|++|.+ .|.++.|++++|+|+|+-..
T Consensus 243 Dl~Is~-----~G~T~~E~~a~g~P~i~i~~ 268 (279)
T TIGR03590 243 DLAIGA-----AGSTSWERCCLGLPSLAICL 268 (279)
T ss_pred CEEEEC-----CchHHHHHHHcCCCEEEEEe
Confidence 999985 67999999999999998543
No 120
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.83 E-value=1.1e-06 Score=93.65 Aligned_cols=124 Identities=19% Similarity=0.182 Sum_probs=83.2
Q ss_pred CCccEEEEEecccc---cCCHHHHHHHHHHHHHcCCEEE-EEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHH
Q 043397 404 GTVPLVVCITRLVA---QKGLHLITHAIKRAEELGGQMI-LLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHM 479 (596)
Q Consensus 404 ~~~~~il~iGrl~~---~KGi~~ll~A~~~l~~~~~~lv-IvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~ 479 (596)
.+.++++..|.... .+-...+++++..+ +.+++ .+|. ..... ....++|.+.++++.. .
T Consensus 238 ~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~---~~~~i~~~g~---~~~~~--------~~~~~~v~~~~~~p~~---~ 300 (401)
T cd03784 238 GRPPVYVGFGSMVVRDPEALARLDVEAVATL---GQRAILSLGW---GGLGA--------EDLPDNVRVVDFVPHD---W 300 (401)
T ss_pred CCCcEEEeCCCCcccCHHHHHHHHHHHHHHc---CCeEEEEccC---ccccc--------cCCCCceEEeCCCCHH---H
Confidence 34567788888743 33445555555543 56654 4554 22111 2335689999999864 5
Q ss_pred HHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEeCC--CHHHHHHHHHH
Q 043397 480 LYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFEGI--DEGSLNWALDR 553 (596)
Q Consensus 480 ~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~~~--d~~~la~~i~~ 553 (596)
++..||++| .-+...++.||+++|+|.|+....+ ..+.+.+ .+.|...... +++++.+++.+
T Consensus 301 ll~~~d~~I----~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~--------~G~g~~l~~~~~~~~~l~~al~~ 368 (401)
T cd03784 301 LLPRCAAVV----HHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAE--------LGAGPALDPRELTAERLAAALRR 368 (401)
T ss_pred Hhhhhheee----ecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHH--------CCCCCCCCcccCCHHHHHHHHHH
Confidence 688899999 3355689999999999999976554 2333433 4567766554 68999999999
Q ss_pred HHH
Q 043397 554 AFR 556 (596)
Q Consensus 554 ll~ 556 (596)
+++
T Consensus 369 ~l~ 371 (401)
T cd03784 369 LLD 371 (401)
T ss_pred HhC
Confidence 986
No 121
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.79 E-value=2.2e-06 Score=87.68 Aligned_cols=296 Identities=14% Similarity=0.085 Sum_probs=161.4
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeC
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVS 188 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (596)
|||++=...- | --.+...+.++|.++||+|.+.+..++...+- ...-
T Consensus 1 MkIwiDi~~p-~------hvhfFk~~I~eL~~~GheV~it~R~~~~~~~L--------------------------L~~y 47 (335)
T PF04007_consen 1 MKIWIDITHP-A------HVHFFKNIIRELEKRGHEVLITARDKDETEEL--------------------------LDLY 47 (335)
T ss_pred CeEEEECCCc-h------HHHHHHHHHHHHHhCCCEEEEEEeccchHHHH--------------------------HHHc
Confidence 7887754322 2 26788899999999999999999766543221 0023
Q ss_pred CeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhh-CCCCcEEEEcCCcc-chHHHHHHHHhhhccCCCCc
Q 043397 189 SIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVT-GVQPDIIHVHEWQI-GALPLLYWDMYQSLSLKKPR 266 (596)
Q Consensus 189 gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~-~~~pDVIh~~~~~~-~~~~~~~~~~~~~~~~~~~p 266 (596)
|+++..+... . ... ..+.........++++.. ..+||++.++.... ..++. ..++|
T Consensus 48 g~~y~~iG~~-g----~~~-------~~Kl~~~~~R~~~l~~~~~~~~pDv~is~~s~~a~~va~----------~lgiP 105 (335)
T PF04007_consen 48 GIDYIVIGKH-G----DSL-------YGKLLESIERQYKLLKLIKKFKPDVAISFGSPEAARVAF----------GLGIP 105 (335)
T ss_pred CCCeEEEcCC-C----CCH-------HHHHHHHHHHHHHHHHHHHhhCCCEEEecCcHHHHHHHH----------HhCCC
Confidence 5555555421 0 111 112222222222333221 36999998764221 21222 24899
Q ss_pred EEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhh
Q 043397 267 IVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLAS 346 (596)
Q Consensus 267 vv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~ 346 (596)
.|....+... .. ..+..+..||.|++..-.-.......|
T Consensus 106 ~I~f~D~e~a-~~------------------------------------~~~Lt~Pla~~i~~P~~~~~~~~~~~G---- 144 (335)
T PF04007_consen 106 SIVFNDTEHA-IA------------------------------------QNRLTLPLADVIITPEAIPKEFLKRFG---- 144 (335)
T ss_pred eEEEecCchh-hc------------------------------------cceeehhcCCeeECCcccCHHHHHhcC----
Confidence 8887764221 00 011123348888887743333333333
Q ss_pred hhhccCCcEEEe-eCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCC-----
Q 043397 347 VLITHRDKYFGI-LNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKG----- 420 (596)
Q Consensus 347 ~~~~~~~ki~vI-~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KG----- 420 (596)
.+ -.+. +||++...|-..-. ....+.+++|++ +.++|+. |..+.+-
T Consensus 145 -----~~-~~i~~y~G~~E~ayl~~F~-----------------Pd~~vl~~lg~~---~~~yIvv--R~~~~~A~y~~~ 196 (335)
T PF04007_consen 145 -----AK-NQIRTYNGYKELAYLHPFK-----------------PDPEVLKELGLD---DEPYIVV--RPEAWKASYDNG 196 (335)
T ss_pred -----Cc-CCEEEECCeeeEEeecCCC-----------------CChhHHHHcCCC---CCCEEEE--EeccccCeeecC
Confidence 22 2344 78887544321100 113566788863 4455553 5444222
Q ss_pred -HHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEe-ccCHHHHHHHHHhCCEEEEcCCCCCCch
Q 043397 421 -LHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILL-MYSEELSHMLYAAADIVLVPSIYEPCGL 498 (596)
Q Consensus 421 -i~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g-~~~~~~l~~~~a~aDi~l~PS~~E~~gl 498 (596)
-..+-+.++.+.+.+-.++++-. ...+. .+.+.++ +.+.. .++ ..+++.-||++|- +.|.
T Consensus 197 ~~~i~~~ii~~L~~~~~~vV~ipr---~~~~~---~~~~~~~----~~i~~~~vd---~~~Ll~~a~l~Ig-----~ggT 258 (335)
T PF04007_consen 197 KKSILPEIIEELEKYGRNVVIIPR---YEDQR---ELFEKYG----VIIPPEPVD---GLDLLYYADLVIG-----GGGT 258 (335)
T ss_pred ccchHHHHHHHHHhhCceEEEecC---Ccchh---hHHhccC----ccccCCCCC---HHHHHHhcCEEEe-----CCcH
Confidence 13344566666554444666665 22222 2223322 33332 222 4589999999993 3567
Q ss_pred HHHHHHhcCCceEEeCCC---CccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 499 AQMIGMRYGAVPVVRKTG---GLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 499 ~~lEAma~G~pvI~s~~g---g~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
...||...|+|.|.+..| +..+.+. +.|+++...|++++.+.+...+.
T Consensus 259 Ma~EAA~LGtPaIs~~~g~~~~vd~~L~----------~~Gll~~~~~~~ei~~~v~~~~~ 309 (335)
T PF04007_consen 259 MAREAALLGTPAISCFPGKLLAVDKYLI----------EKGLLYHSTDPDEIVEYVRKNLG 309 (335)
T ss_pred HHHHHHHhCCCEEEecCCcchhHHHHHH----------HCCCeEecCCHHHHHHHHHHhhh
Confidence 789999999999996544 3334443 36899998899998886655543
No 122
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.75 E-value=7.8e-07 Score=91.55 Aligned_cols=124 Identities=18% Similarity=0.165 Sum_probs=81.6
Q ss_pred CCccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh
Q 043397 404 GTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA 483 (596)
Q Consensus 404 ~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~ 483 (596)
+...+++++|..... .++++++.+ ++.+++++|. +... ...+||.+.++.. +.+.+++++
T Consensus 191 ~~~~iLv~~gg~~~~----~~~~~l~~~--~~~~~~v~g~---~~~~----------~~~~ni~~~~~~~-~~~~~~m~~ 250 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG----DLIEALKAL--PDYQFIVFGP---NAAD----------PRPGNIHVRPFST-PDFAELMAA 250 (318)
T ss_pred CCCEEEEEeCCCcHH----HHHHHHHhC--CCCeEEEEcC---Cccc----------ccCCCEEEeecCh-HHHHHHHHh
Confidence 456688999987666 666777665 5789999987 3100 1156899887652 337899999
Q ss_pred CCEEEEcCCCCCCch-HHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEe--CCCHHHHHHHHHHH
Q 043397 484 ADIVLVPSIYEPCGL-AQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFE--GIDEGSLNWALDRA 554 (596)
Q Consensus 484 aDi~l~PS~~E~~gl-~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~--~~d~~~la~~i~~l 554 (596)
||++|.- .|. +++||+++|+|.|+-...+..|-... .....+.+.|..++ .-+++.|.+.|+++
T Consensus 251 ad~vIs~-----~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~--a~~l~~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 251 ADLVISK-----GGYTTISEALALGKPALVIPRPGQDEQEYN--ARKLEELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred CCEEEEC-----CCHHHHHHHHHcCCCEEEEeCCCCchHHHH--HHHHHHCCCeEEcccccCCHHHHHHHHhcC
Confidence 9999965 344 49999999999999776553333211 00011245566654 33567777777653
No 123
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.73 E-value=1.3e-05 Score=85.21 Aligned_cols=156 Identities=12% Similarity=0.097 Sum_probs=94.7
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEE-EecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh
Q 043397 405 TVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMIL-LGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA 483 (596)
Q Consensus 405 ~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvI-vG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~ 483 (596)
...+++..|+....+. +.+-.+++.+.+.+.++++ +|. +...+.+.. ..++|.+.++++.. .+++.
T Consensus 225 ~~~v~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~g~---~~~~~~~~~------~~~~v~~~~~~p~~---~ll~~ 291 (392)
T TIGR01426 225 RPVVLISLGTVFNNQP-SFYRTCVEAFRDLDWHVVLSVGR---GVDPADLGE------LPPNVEVRQWVPQL---EILKK 291 (392)
T ss_pred CCEEEEecCccCCCCH-HHHHHHHHHHhcCCCeEEEEECC---CCChhHhcc------CCCCeEEeCCCCHH---HHHhh
Confidence 3456678888643332 2322333444444666554 555 332222221 24689999999874 57899
Q ss_pred CCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCc----cccccccCCCCCCCccceEEEeCC--CHHHHHHHHHHHHHh
Q 043397 484 ADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGL----ADTVFDVDDPSNHEKANGFVFEGI--DEGSLNWALDRAFRH 557 (596)
Q Consensus 484 aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~----~e~i~~~~~~~~~~~~~G~lv~~~--d~~~la~~i~~ll~~ 557 (596)
||++|.. +...+++||+++|+|.|+....+- .+.+.+ .+.|..+... +++++.++|.++++
T Consensus 292 ~~~~I~h----gG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~--------~g~g~~l~~~~~~~~~l~~ai~~~l~- 358 (392)
T TIGR01426 292 ADAFITH----GGMNSTMEALFNGVPMVAVPQGADQPMTARRIAE--------LGLGRHLPPEEVTAEKLREAVLAVLS- 358 (392)
T ss_pred CCEEEEC----CCchHHHHHHHhCCCEEecCCcccHHHHHHHHHH--------CCCEEEeccccCCHHHHHHHHHHHhc-
Confidence 9999964 233578999999999999654442 223333 3567666533 57899999999998
Q ss_pred ccCCHHHHHHHH--HHHHHhcCCHHHHHHHHHHH
Q 043397 558 FIDKPEEWNRIV--QKIMENDNSWNNAAGKYMEI 589 (596)
Q Consensus 558 ~~~~~~~~~~~~--~~~~~~~fs~~~~~~~~~~i 589 (596)
|++.++++. ++.+...-.-+..++.+.++
T Consensus 359 ---~~~~~~~~~~l~~~~~~~~~~~~aa~~i~~~ 389 (392)
T TIGR01426 359 ---DPRYAERLRKMRAEIREAGGARRAADEIEGF 389 (392)
T ss_pred ---CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 776544433 22223345666666665554
No 124
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.67 E-value=5e-08 Score=98.41 Aligned_cols=315 Identities=16% Similarity=0.173 Sum_probs=173.1
Q ss_pred cEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCC-CCcchhhhhhhcCCCchhhhhhhhhccccccC--CCccc
Q 043397 237 DIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEH-YGECRQEQLSKCGLDGSIYASVEKAIDDRTIG--HNPER 313 (596)
Q Consensus 237 DVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 313 (596)
-|-|.|+|+++..-.+.... ...+-.|+|.|...- ...|. -...+|.-++..--+...+ .-+.+
T Consensus 176 vVahFHEW~AGVgL~l~R~r-----rl~iaTifTTHATLLGRyLCA--------~~~DfYNnLd~f~vD~EAGkr~IYHr 242 (692)
T KOG3742|consen 176 VVAHFHEWQAGVGLILCRAR-----RLDIATIFTTHATLLGRYLCA--------GNVDFYNNLDSFDVDKEAGKRQIYHR 242 (692)
T ss_pred HHHHHHHHHhccchheehhc-----ccceEEEeehhHHHHHHHHhc--------ccchhhhchhhcccchhhccchhHHH
Confidence 35589999987443332221 346677889885432 11111 1233444433332111111 11256
Q ss_pred chhhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHH
Q 043397 314 LSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYY 393 (596)
Q Consensus 314 ~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~ 393 (596)
.++.+.+...|+...|||+-.+-+.. .+-. .++=.+.|||.+...|.+.-+ |..-....|+...++
T Consensus 243 YC~ERaa~h~AhVFTTVSeITa~EAe-------HlLk-RKPD~itPNGLNV~KFsA~HE------FQNLHA~~KekIndF 308 (692)
T KOG3742|consen 243 YCLERAAAHTAHVFTTVSEITALEAE-------HLLK-RKPDVITPNGLNVKKFSAVHE------FQNLHAQKKEKINDF 308 (692)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHH-------HHHh-cCCCeeCCCCcceeehhHHHH------HHHHHHHHHHHHHHH
Confidence 78888888889999999985443311 1111 233347899999888765311 111111233344445
Q ss_pred HHhhc-C-CCCC-CCccEEEEEeccc-ccCCHHHHHHHHHHHHH----c--C---CEEEEEec-CC-------CC-----
Q 043397 394 IQKGL-G-LKSE-GTVPLVVCITRLV-AQKGLHLITHAIKRAEE----L--G---GQMILLGN-SP-------VH----- 447 (596)
Q Consensus 394 ~~~~l-~-l~~~-~~~~~il~iGrl~-~~KGi~~ll~A~~~l~~----~--~---~~lvIvG~-~~-------~g----- 447 (596)
+|-.+ | ++-+ ++..++...||.+ ..||-|.+|++++++.- . + +.|+|+-. ++ .|
T Consensus 309 VRGHF~GhlDFdLdkTlyfFiAGRYEf~NKGaDmFiEsLaRLN~~Lk~~~s~~TVVaFlImPaktN~FnVesLkgqAv~k 388 (692)
T KOG3742|consen 309 VRGHFHGHLDFDLDKTLYFFIAGRYEFSNKGADMFIESLARLNYLLKVSGSPKTVVAFLIMPAKTNSFNVESLKGQAVRK 388 (692)
T ss_pred hhhhccccccccccceEEEEEeeeeeeccCchHHHHHHHHHhHHHHeecCCCceEEEEEEeecCCCccchhhhccHHHHH
Confidence 55443 1 1111 3456677788984 68999999999999843 1 1 23444422 10 00
Q ss_pred --------------------------cchH---------HHHH----------------------------HHHHcCC--
Q 043397 448 --------------------------WVQK---------DFED----------------------------LANLHNK-- 462 (596)
Q Consensus 448 --------------------------~~~~---------~l~~----------------------------~~~~~~~-- 462 (596)
+..+ .+++ .+.+-++
T Consensus 389 qL~dtv~~Vk~~~Gkrifd~~l~g~lPd~~ell~~~d~v~lKr~i~a~~r~slPPv~THNm~dDa~DpiL~~iRr~~LFN 468 (692)
T KOG3742|consen 389 QLWDTVNEVKEKVGKRIFDHCLRGELPDLDELLDKDDLVLLKRCIFALQRQSLPPVCTHNMIDDANDPILSSIRRIGLFN 468 (692)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCChHHhhChhHHHHHHHHHHHhccCCCCCceeccccccccchHHHHhHhhhccc
Confidence 0000 0011 0111111
Q ss_pred --CCc--EEEEe-ccC------HHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCcc----ccccccCC
Q 043397 463 --GTS--TRILL-MYS------EELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLA----DTVFDVDD 527 (596)
Q Consensus 463 --~~~--V~~~g-~~~------~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~----e~i~~~~~ 527 (596)
.++ |+|+. +++ .-+..+..+.|++.|+||++|++|.+..|.--+|+|-|.++..|+. |.|++-
T Consensus 469 ~~~DRVKvifHPEFLss~sPllglDYeeFVRGCHLGVFPSYYEPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~-- 546 (692)
T KOG3742|consen 469 SPSDRVKVIFHPEFLSSTSPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDP-- 546 (692)
T ss_pred CcccceEEEecHHHhccCCCCcCCCHHHHhccccccccccccCCCCCCchheEEeccccccccccchhhhHHHHhcCc--
Confidence 122 34442 211 1124567899999999999999999999999999999999999854 455441
Q ss_pred CCCCCccceEEEe-------CCCHHHHHHHHHHHHHhccCCHHHHHHHH-HHHHH---hcCCHHHHHHHHHHHH
Q 043397 528 PSNHEKANGFVFE-------GIDEGSLNWALDRAFRHFIDKPEEWNRIV-QKIME---NDNSWNNAAGKYMEIY 590 (596)
Q Consensus 528 ~~~~~~~~G~lv~-------~~d~~~la~~i~~ll~~~~~~~~~~~~~~-~~~~~---~~fs~~~~~~~~~~iy 590 (596)
..-|+.+- ..+.++|++-|.+... ..+++++- ++.-+ .-.+|..+...|.+.=
T Consensus 547 -----~ayGIYIvDRRfks~deSv~qL~~~m~~F~~-----qsRRQRIiqRNrtErLSdLLDWk~lG~~Y~~aR 610 (692)
T KOG3742|consen 547 -----QAYGIYIVDRRFKSPDESVQQLASFMYEFCK-----QSRRQRIIQRNRTERLSDLLDWKYLGRYYRKAR 610 (692)
T ss_pred -----hhceEEEEecccCChhhHHHHHHHHHHHHHH-----HHHHHHHHHhcchhhHHHHHhHHHHhHHHHHHH
Confidence 23565552 2245666666666664 23333333 22222 4578888877776643
No 125
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.62 E-value=1e-06 Score=78.79 Aligned_cols=109 Identities=25% Similarity=0.389 Sum_probs=67.3
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCC
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSS 189 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 189 (596)
|||+++... +.++.+++++|.++||+|+++++..+.. ... ...|
T Consensus 1 KIl~i~~~~---------~~~~~~~~~~L~~~g~~V~ii~~~~~~~-~~~--------------------------~~~~ 44 (139)
T PF13477_consen 1 KILLIGNTP---------STFIYNLAKELKKRGYDVHIITPRNDYE-KYE--------------------------IIEG 44 (139)
T ss_pred CEEEEecCc---------HHHHHHHHHHHHHCCCEEEEEEcCCCch-hhh--------------------------HhCC
Confidence 688887544 4577899999999999999999743321 110 1256
Q ss_pred eEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCcc-chHHHHHHHHhhhccCCCCcEE
Q 043397 190 IPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQI-GALPLLYWDMYQSLSLKKPRIV 268 (596)
Q Consensus 190 v~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~-~~~~~~~~~~~~~~~~~~~pvv 268 (596)
+.++.++... +. ...+..+ ..+..+++. .+|||||+|...+ ++++.+++.. ...+|+|
T Consensus 45 i~~~~~~~~~---k~----------~~~~~~~-~~l~k~ik~--~~~DvIh~h~~~~~~~~~~l~~~~-----~~~~~~i 103 (139)
T PF13477_consen 45 IKVIRLPSPR---KS----------PLNYIKY-FRLRKIIKK--EKPDVIHCHTPSPYGLFAMLAKKL-----LKNKKVI 103 (139)
T ss_pred eEEEEecCCC---Cc----------cHHHHHH-HHHHHHhcc--CCCCEEEEecCChHHHHHHHHHHH-----cCCCCEE
Confidence 7777665210 00 0011111 134444443 6899999998665 5556555433 2338999
Q ss_pred EEEcCCC
Q 043397 269 LTIHNME 275 (596)
Q Consensus 269 ~tiH~~~ 275 (596)
++.|+..
T Consensus 104 ~~~hg~~ 110 (139)
T PF13477_consen 104 YTVHGSD 110 (139)
T ss_pred EEecCCe
Confidence 9999764
No 126
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.60 E-value=3.9e-06 Score=87.11 Aligned_cols=211 Identities=16% Similarity=0.133 Sum_probs=120.4
Q ss_pred cCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCC-CCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhc---C
Q 043397 324 SNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNG-IDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGL---G 399 (596)
Q Consensus 324 ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nG-id~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l---~ 399 (596)
|+..++.++..++.++..| .++.+|+++-|. +|.-.. .+....+.+ +
T Consensus 123 a~lhf~~t~~~~~~L~~~G-------~~~~rI~~vG~~~~D~l~~----------------------~~~~~~~~~~~~~ 173 (346)
T PF02350_consen 123 AHLHFAPTEEARERLLQEG-------EPPERIFVVGNPGIDALLQ----------------------NKEEIEEKYKNSG 173 (346)
T ss_dssp -SEEEESSHHHHHHHHHTT---------GGGEEE---HHHHHHHH----------------------HHHTTCC-HHHHH
T ss_pred hhhhccCCHHHHHHHHhcC-------CCCCeEEEEChHHHHHHHH----------------------hHHHHhhhhhhHH
Confidence 8999999999999988766 457789888663 442110 001111000 1
Q ss_pred C--CCCCCccEEEEEecccc---cCCHHHHHHHHHHHHHc-CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccC
Q 043397 400 L--KSEGTVPLVVCITRLVA---QKGLHLITHAIKRAEEL-GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYS 473 (596)
Q Consensus 400 l--~~~~~~~~il~iGrl~~---~KGi~~ll~A~~~l~~~-~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~ 473 (596)
+ . .+++.++++.=|... ......+.++++.+.+. ++++++...+ .......+.+..+++ +++++...++
T Consensus 174 i~~~-~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn-~p~~~~~i~~~l~~~---~~v~~~~~l~ 248 (346)
T PF02350_consen 174 ILQD-APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHN-NPRGSDIIIEKLKKY---DNVRLIEPLG 248 (346)
T ss_dssp HHHC-TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S--HHHHHHHHHHHTT----TTEEEE----
T ss_pred HHhc-cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecC-CchHHHHHHHHhccc---CCEEEECCCC
Confidence 1 1 133444444433221 34567888888888764 8888887762 123445555555554 3899999999
Q ss_pred HHHHHHHHHhCCEEEEcCCCCCCchHHH-HHHhcCCceEEe-CCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHH
Q 043397 474 EELSHMLYAAADIVLVPSIYEPCGLAQM-IGMRYGAVPVVR-KTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWAL 551 (596)
Q Consensus 474 ~~~l~~~~a~aDi~l~PS~~E~~gl~~l-EAma~G~pvI~s-~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i 551 (596)
..++..+++.|+++|-- .| .+. ||..+|+|+|.- +.|--++.+.. +...++. .|.+++.++|
T Consensus 249 ~~~~l~ll~~a~~vvgd-----Ss-GI~eEa~~lg~P~v~iR~~geRqe~r~~---------~~nvlv~-~~~~~I~~ai 312 (346)
T PF02350_consen 249 YEEYLSLLKNADLVVGD-----SS-GIQEEAPSLGKPVVNIRDSGERQEGRER---------GSNVLVG-TDPEAIIQAI 312 (346)
T ss_dssp HHHHHHHHHHESEEEES-----SH-HHHHHGGGGT--EEECSSS-S-HHHHHT---------TSEEEET-SSHHHHHHHH
T ss_pred HHHHHHHHhcceEEEEc-----Cc-cHHHHHHHhCCeEEEecCCCCCHHHHhh---------cceEEeC-CCHHHHHHHH
Confidence 99999999999999843 45 566 999999999995 66667777765 3444565 5999999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043397 552 DRAFRHFIDKPEEWNRIVQKIMENDNSWNNAAGKYMEIY 590 (596)
Q Consensus 552 ~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~iy 590 (596)
.++++ +++.+..+.. ...-|--...+++..++.
T Consensus 313 ~~~l~----~~~~~~~~~~--~~npYgdG~as~rI~~~L 345 (346)
T PF02350_consen 313 EKALS----DKDFYRKLKN--RPNPYGDGNASERIVEIL 345 (346)
T ss_dssp HHHHH-----HHHHHHHHC--S--TT-SS-HHHHHHHHH
T ss_pred HHHHh----ChHHHHhhcc--CCCCCCCCcHHHHHHHhh
Confidence 99998 6555555432 112455455666666654
No 127
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.57 E-value=3.1e-06 Score=89.44 Aligned_cols=185 Identities=15% Similarity=0.031 Sum_probs=116.7
Q ss_pred HHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCC-cEEEEe
Q 043397 394 IQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGT-STRILL 470 (596)
Q Consensus 394 ~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~-~V~~~g 470 (596)
.|+.+|++ ++.+++++..++ .|=-+..++++.++.+ |+.+|++.... ....+.+++.+++.|+.. ++.|.+
T Consensus 275 ~R~~~gLp--~d~vvF~~fn~~--~KI~p~~l~~W~~IL~~vP~S~L~L~~~~--~~~~~~l~~~~~~~Gv~~~Ri~f~~ 348 (468)
T PF13844_consen 275 TRAQYGLP--EDAVVFGSFNNL--FKISPETLDLWARILKAVPNSRLWLLRFP--ASGEARLRRRFAAHGVDPDRIIFSP 348 (468)
T ss_dssp ETGGGT----SSSEEEEE-S-G--GG--HHHHHHHHHHHHHSTTEEEEEEETS--TTHHHHHHHHHHHTTS-GGGEEEEE
T ss_pred CHHHcCCC--CCceEEEecCcc--ccCCHHHHHHHHHHHHhCCCcEEEEeeCC--HHHHHHHHHHHHHcCCChhhEEEcC
Confidence 46789997 677777777775 6667888898888876 78888887652 234577888888999974 699999
Q ss_pred ccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHH
Q 043397 471 MYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWA 550 (596)
Q Consensus 471 ~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~ 550 (596)
..+.++....|+.+||+|=+..+ +-+.+.+||+.+|+|+|+-.-..+..-+.-.- ...-|-..++.. |.++..+.
T Consensus 349 ~~~~~ehl~~~~~~DI~LDT~p~-nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSi--L~~lGl~ElIA~--s~~eYv~~ 423 (468)
T PF13844_consen 349 VAPREEHLRRYQLADICLDTFPY-NGGTTTLDALWMGVPVVTLPGETMASRVGASI--LRALGLPELIAD--SEEEYVEI 423 (468)
T ss_dssp ---HHHHHHHGGG-SEEE--SSS---SHHHHHHHHHT--EEB---SSGGGSHHHHH--HHHHT-GGGB-S--SHHHHHHH
T ss_pred CCCHHHHHHHhhhCCEEeeCCCC-CCcHHHHHHHHcCCCEEeccCCCchhHHHHHH--HHHcCCchhcCC--CHHHHHHH
Confidence 99988888899999999988444 56899999999999999854222222211000 000022233333 78888888
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHH
Q 043397 551 LDRAFRHFIDKPEEWNRIVQKIME-----NDNSWNNAAGKYMEIYNSI 593 (596)
Q Consensus 551 i~~ll~~~~~~~~~~~~~~~~~~~-----~~fs~~~~~~~~~~iy~~l 593 (596)
-.++.+ |++.+++++++..+ .-|+-...++++.+.|+++
T Consensus 424 Av~La~----D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~m 467 (468)
T PF13844_consen 424 AVRLAT----DPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQM 467 (468)
T ss_dssp HHHHHH-----HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHH
T ss_pred HHHHhC----CHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh
Confidence 888887 88988888754433 3489999999999999875
No 128
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.56 E-value=1.6e-05 Score=84.34 Aligned_cols=156 Identities=15% Similarity=0.107 Sum_probs=104.8
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhC
Q 043397 405 TVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAA 484 (596)
Q Consensus 405 ~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~a 484 (596)
..++++..|..... .+++-.+++.+.+.+.++++... + .... ..++..|+...++++..+ ++..|
T Consensus 237 ~~~vyvslGt~~~~--~~l~~~~~~a~~~l~~~vi~~~~---~-~~~~------~~~~p~n~~v~~~~p~~~---~l~~a 301 (406)
T COG1819 237 RPIVYVSLGTVGNA--VELLAIVLEALADLDVRVIVSLG---G-ARDT------LVNVPDNVIVADYVPQLE---LLPRA 301 (406)
T ss_pred CCeEEEEcCCcccH--HHHHHHHHHHHhcCCcEEEEecc---c-cccc------cccCCCceEEecCCCHHH---Hhhhc
Confidence 45566777776655 44444444555556888888775 3 1111 124466899999999844 89999
Q ss_pred CEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEe--CCCHHHHHHHHHHHHHhc
Q 043397 485 DIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFE--GIDEGSLNWALDRAFRHF 558 (596)
Q Consensus 485 Di~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~--~~d~~~la~~i~~ll~~~ 558 (596)
|++|+. |--.+..||+.+|+|+|+-..+. ..+.+++ -+.|.... .-+++.+.++|+++++
T Consensus 302 d~vI~h----GG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~--------~G~G~~l~~~~l~~~~l~~av~~vL~-- 367 (406)
T COG1819 302 DAVIHH----GGAGTTSEALYAGVPLVVIPDGADQPLNAERVEE--------LGAGIALPFEELTEERLRAAVNEVLA-- 367 (406)
T ss_pred CEEEec----CCcchHHHHHHcCCCEEEecCCcchhHHHHHHHH--------cCCceecCcccCCHHHHHHHHHHHhc--
Confidence 999965 66678999999999999965543 3334444 57887776 5689999999999998
Q ss_pred cCCHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 043397 559 IDKPEEWNRIV--QKIMENDNSWNNAAGKYMEIYN 591 (596)
Q Consensus 559 ~~~~~~~~~~~--~~~~~~~fs~~~~~~~~~~iy~ 591 (596)
|+...+... ++.++..-..+++++.+.++..
T Consensus 368 --~~~~~~~~~~~~~~~~~~~g~~~~a~~le~~~~ 400 (406)
T COG1819 368 --DDSYRRAAERLAEEFKEEDGPAKAADLLEEFAR 400 (406)
T ss_pred --CHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHh
Confidence 665544433 2233345555556666666554
No 129
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.53 E-value=3.9e-05 Score=78.00 Aligned_cols=327 Identities=15% Similarity=0.117 Sum_probs=179.4
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeee
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVV 187 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (596)
+|||.+++.+.. | ...-.+|.++|.++=-+|.++.-..+.+.++
T Consensus 1 ~~ki~i~AGE~S------G-DllGa~LikaLk~~~~~~efvGvgG~~m~ae----------------------------- 44 (381)
T COG0763 1 MLKIALSAGEAS------G-DLLGAGLIKALKARYPDVEFVGVGGEKMEAE----------------------------- 44 (381)
T ss_pred CceEEEEecccc------h-hhHHHHHHHHHHhhCCCeEEEEeccHHHHhc-----------------------------
Confidence 478999987653 2 5566689999998733888887554444322
Q ss_pred CCeEEEEEcCCccccCCCcccCCChh-hHHHHHHHHHHHHHHHHh-hCCCCcEEEEcCCccchHHHHHHHHhhhccCCCC
Q 043397 188 SSIPVIFIEPSNQFFKGKNVYGGSYN-ELEAYLFFSRACLEWMQV-TGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKP 265 (596)
Q Consensus 188 ~gv~v~~~~~~~~~~~~~~~y~~~~~-~~~~~~~f~~~~~~~l~~-~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (596)
|+...+ + .+.+. +. ... -+.+...+.+...+.++. ...+||++.+-|.+.+.+.+..+ +++. .+++
T Consensus 45 -G~~sl~-~-~~els----vm--Gf~EVL~~lp~llk~~~~~~~~i~~~kpD~~i~IDsPdFnl~vak~-lrk~--~p~i 112 (381)
T COG0763 45 -GLESLF-D-MEELS----VM--GFVEVLGRLPRLLKIRRELVRYILANKPDVLILIDSPDFNLRVAKK-LRKA--GPKI 112 (381)
T ss_pred -cCcccc-C-HHHHH----Hh--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCchHHHHH-HHHh--CCCC
Confidence 111110 0 00000 00 011 111222222233333332 24799999988766555544322 1111 4568
Q ss_pred cEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhh
Q 043397 266 RIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLA 345 (596)
Q Consensus 266 pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~ 345 (596)
|+|+.+--..+ .++ +.| .....+++|.++++=|.-.+.+...|
T Consensus 113 ~iihYV~PsVW--AWr-----------------------------~~R---a~~i~~~~D~lLailPFE~~~y~k~g--- 155 (381)
T COG0763 113 KIIHYVSPSVW--AWR-----------------------------PKR---AVKIAKYVDHLLAILPFEPAFYDKFG--- 155 (381)
T ss_pred CeEEEECccee--eec-----------------------------hhh---HHHHHHHhhHeeeecCCCHHHHHhcC---
Confidence 88777652221 000 011 12224568999999986666654433
Q ss_pred hhhhccCCcEEEeeCCC-CCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEec-ccc-cCCHH
Q 043397 346 SVLITHRDKYFGILNGI-DTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITR-LVA-QKGLH 422 (596)
Q Consensus 346 ~~~~~~~~ki~vI~nGi-d~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGr-l~~-~KGi~ 422 (596)
..+..|-|.. |.-.+.+ +++.++++++++. ..+.+.+..|. -++ .+-..
T Consensus 156 -------~~~~yVGHpl~d~i~~~~--------------------~r~~ar~~l~~~~-~~~~lalLPGSR~sEI~rl~~ 207 (381)
T COG0763 156 -------LPCTYVGHPLADEIPLLP--------------------DREAAREKLGIDA-DEKTLALLPGSRRSEIRRLLP 207 (381)
T ss_pred -------CCeEEeCChhhhhccccc--------------------cHHHHHHHhCCCC-CCCeEEEecCCcHHHHHHHHH
Confidence 2345554443 2211222 3566889999872 33444556664 333 45678
Q ss_pred HHHHHHHHHHH--cCCEEEEEecCCCCcchHHHH-HHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchH
Q 043397 423 LITHAIKRAEE--LGGQMILLGNSPVHWVQKDFE-DLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLA 499 (596)
Q Consensus 423 ~ll~A~~~l~~--~~~~lvIvG~~~~g~~~~~l~-~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~ 499 (596)
.+++|+.++.+ ++.++++--. ....+.++ ...+.... ...-.+.+.+..+.+++||+.+.. +|.+
T Consensus 208 ~f~~a~~~l~~~~~~~~~vlp~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~~aD~al~a-----SGT~ 275 (381)
T COG0763 208 PFVQAAQELKARYPDLKFVLPLV---NAKYRRIIEEALKWEVA----GLSLILIDGEKRKAFAAADAALAA-----SGTA 275 (381)
T ss_pred HHHHHHHHHHhhCCCceEEEecC---cHHHHHHHHHHhhcccc----CceEEecCchHHHHHHHhhHHHHh-----ccHH
Confidence 88889988875 6889888766 33323333 33322111 122334455577899999998865 6999
Q ss_pred HHHHHhcCCceEEe-CCCC----------------ccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCH
Q 043397 500 QMIGMRYGAVPVVR-KTGG----------------LADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKP 562 (596)
Q Consensus 500 ~lEAma~G~pvI~s-~~gg----------------~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~ 562 (596)
.+|++.+|+|.|++ .+.. ++.++-+.. -.--++-+.-.++.+++++..++. |.
T Consensus 276 tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~------ivPEliq~~~~pe~la~~l~~ll~----~~ 345 (381)
T COG0763 276 TLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGRE------IVPELIQEDCTPENLARALEELLL----NG 345 (381)
T ss_pred HHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCc------cchHHHhhhcCHHHHHHHHHHHhc----Ch
Confidence 99999999999984 3333 333332200 000111123368999999999998 66
Q ss_pred HHHHHHH
Q 043397 563 EEWNRIV 569 (596)
Q Consensus 563 ~~~~~~~ 569 (596)
+.++++.
T Consensus 346 ~~~~~~~ 352 (381)
T COG0763 346 DRREALK 352 (381)
T ss_pred HhHHHHH
Confidence 5555544
No 130
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.47 E-value=2.3e-05 Score=79.15 Aligned_cols=210 Identities=11% Similarity=0.091 Sum_probs=138.5
Q ss_pred cCeEEEeChhh-HHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCC
Q 043397 324 SNAVVTVSPTY-LKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKS 402 (596)
Q Consensus 324 ad~vi~vS~~~-~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~ 402 (596)
-|.|++.++.. ++...+.++ ..+++.+++++|.+.+.|.+..
T Consensus 139 fd~v~~~g~~l~~~~yyq~~~--------~~~~~~~~~a~d~~~~~~i~~d----------------------------- 181 (373)
T COG4641 139 FDNVLSFGGGLVANKYYQEGG--------ARNCYYLPWAVDDSLFHPIPPD----------------------------- 181 (373)
T ss_pred hhhhhhccchHHHHHHHHhhc--------ccceeccCccCCchhcccCCcc-----------------------------
Confidence 35567777766 444432222 5678899999999988776311
Q ss_pred CCCccEEEEEecccccCCHHHHHHHHHHHHH--c-CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCH-HHHH
Q 043397 403 EGTVPLVVCITRLVAQKGLHLITHAIKRAEE--L-GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSE-ELSH 478 (596)
Q Consensus 403 ~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~-~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~-~~l~ 478 (596)
..-.--+.++|+-.|. .++.+-+.+-.-.. . +-++...|. ......... ...+++.+.|.++. ..++
T Consensus 182 a~~~~dL~~ign~~pD-r~e~~ke~~~~ps~kl~v~rr~~~~g~---~y~~~~~~~-----~~~~~~~yIg~~~~~~~v~ 252 (373)
T COG4641 182 ASYDVDLNLIGNPYPD-RVEEIKEFFVEPSFKLMVDRRFYVLGP---RYPDDIWGR-----TWEPNVQYIGYYNPKDGVP 252 (373)
T ss_pred ccceeeeEEecCCCcc-HHHHHHHHhhccchhhhccceeeecCC---ccchhhhcc-----cccchhhhhhccCccchhh
Confidence 0223357888886555 33333333322111 1 356777777 422222211 12457888888876 8888
Q ss_pred HHHHhCCEEEEcCCC---CC---CchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHH
Q 043397 479 MLYAAADIVLVPSIY---EP---CGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALD 552 (596)
Q Consensus 479 ~~~a~aDi~l~PS~~---E~---~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~ 552 (596)
..++--|+.+.=++. ++ +.+-+.|+++||.+-|+...-++...+.+ |..-++. .|..++.++++
T Consensus 253 ~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~liT~~~~~~e~~f~p--------gk~~iv~--~d~kdl~~~~~ 322 (373)
T COG4641 253 NAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFLITDYWKDLEKFFKP--------GKDIIVY--QDSKDLKEKLK 322 (373)
T ss_pred hcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCccccccHHHHHHhcCC--------chheEEe--cCHHHHHHHHH
Confidence 999999998865542 33 36789999999998888888888888877 3433333 49999999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHH
Q 043397 553 RAFRHFIDKPEEWNRIVQKIME---NDNSWNNAAGKYMEIYNSI 593 (596)
Q Consensus 553 ~ll~~~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~iy~~l 593 (596)
.++. .++.+++++..+.+ ..|+.+.-+.++++....+
T Consensus 323 yll~----h~~erkeiae~~ye~V~~~ht~~~r~~~~~~~i~sI 362 (373)
T COG4641 323 YLLN----HPDERKEIAECAYERVLARHTYEERIFKLLNEIASI 362 (373)
T ss_pred HHhc----CcchHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9998 66677777755544 5688888887777766653
No 131
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.34 E-value=0.00016 Score=75.22 Aligned_cols=310 Identities=17% Similarity=0.110 Sum_probs=169.3
Q ss_pred HHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeCCeEEEEEcCCccccCCCcc
Q 043397 128 GDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSSIPVIFIEPSNQFFKGKNV 207 (596)
Q Consensus 128 ~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~ 207 (596)
..+...|.++|.++.-++.++.-..+.+.+. |+...+=- ..+ ++
T Consensus 11 D~~ga~Li~~Lk~~~p~~~~~GvGG~~M~~~------------------------------G~~~l~d~--~~l----sv 54 (373)
T PF02684_consen 11 DLHGARLIRALKARDPDIEFYGVGGPRMQAA------------------------------GVESLFDM--EEL----SV 54 (373)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEechHHHhC------------------------------CCceecch--HHh----hh
Confidence 7788899999999988888887554444332 22221100 000 00
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHh-hCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhh
Q 043397 208 YGGSYNELEAYLFFSRACLEWMQV-TGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLS 286 (596)
Q Consensus 208 y~~~~~~~~~~~~f~~~~~~~l~~-~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~ 286 (596)
.| -.+-+.++..+.+...+..+. ...+||++..-|.+.+.+.+.-+ +++. ..++|+|+.+--..+ .++
T Consensus 55 mG-~~Evl~~l~~~~~~~~~~~~~~~~~~pd~vIlID~pgFNlrlak~-lk~~--~~~~~viyYI~PqvW--AWr----- 123 (373)
T PF02684_consen 55 MG-FVEVLKKLPKLKRLFRKLVERIKEEKPDVVILIDYPGFNLRLAKK-LKKR--GIPIKVIYYISPQVW--AWR----- 123 (373)
T ss_pred cc-HHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHH-HHHh--CCCceEEEEECCcee--eeC-----
Confidence 11 012223333333333333332 24799999988877655544321 1111 223347766542211 000
Q ss_pred hcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCC
Q 043397 287 KCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVI 366 (596)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~ 366 (596)
..|. +..-+++|.++++=|.-.+...+.| -++..+-|+.=..
T Consensus 124 ------------------------~~R~---~~i~~~~D~ll~ifPFE~~~y~~~g----------~~~~~VGHPl~d~- 165 (373)
T PF02684_consen 124 ------------------------PGRA---KKIKKYVDHLLVIFPFEPEFYKKHG----------VPVTYVGHPLLDE- 165 (373)
T ss_pred ------------------------ccHH---HHHHHHHhheeECCcccHHHHhccC----------CCeEEECCcchhh-
Confidence 1111 2223457889998886666544433 3555665543211
Q ss_pred cCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccE-EEEEec-ccc-cCCHHHHHHHHHHHHH--cCCEEEEE
Q 043397 367 WNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPL-VVCITR-LVA-QKGLHLITHAIKRAEE--LGGQMILL 441 (596)
Q Consensus 367 ~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~-il~iGr-l~~-~KGi~~ll~A~~~l~~--~~~~lvIv 441 (596)
..+.. .+...++.+ ++ +++++ .+..|+ -.+ .+.+..++++++++.+ +++++++.
T Consensus 166 ~~~~~------------------~~~~~~~~~-l~--~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp 224 (373)
T PF02684_consen 166 VKPEP------------------DRAEAREKL-LD--PDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVP 224 (373)
T ss_pred hccCC------------------CHHHHHHhc-CC--CCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 11110 123445555 54 55554 456664 433 4456889999999876 68898887
Q ss_pred ecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEe-CCCCc--
Q 043397 442 GNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVR-KTGGL-- 518 (596)
Q Consensus 442 G~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s-~~gg~-- 518 (596)
... ....+.+++..+..+....+... ..+..+.+++||+.+.. .|.+-+|++.+|+|.|+. .++.+
T Consensus 225 ~a~--~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~m~~ad~al~~-----SGTaTLE~Al~g~P~Vv~Yk~~~lt~ 293 (373)
T PF02684_consen 225 VAP--EVHEELIEEILAEYPPDVSIVII----EGESYDAMAAADAALAA-----SGTATLEAALLGVPMVVAYKVSPLTY 293 (373)
T ss_pred cCC--HHHHHHHHHHHHhhCCCCeEEEc----CCchHHHHHhCcchhhc-----CCHHHHHHHHhCCCEEEEEcCcHHHH
Confidence 651 23334455555554433223322 22366789999999876 699999999999999984 43332
Q ss_pred --------------cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHH
Q 043397 519 --------------ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEE 564 (596)
Q Consensus 519 --------------~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~ 564 (596)
+.++-+ .+-.--++-+..+++.++.++.++++ |++.
T Consensus 294 ~iak~lvk~~~isL~Niia~------~~v~PEliQ~~~~~~~i~~~~~~ll~----~~~~ 343 (373)
T PF02684_consen 294 FIAKRLVKVKYISLPNIIAG------REVVPELIQEDATPENIAAELLELLE----NPEK 343 (373)
T ss_pred HHHHHhhcCCEeechhhhcC------CCcchhhhcccCCHHHHHHHHHHHhc----CHHH
Confidence 222211 00111223344589999999999998 7655
No 132
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=0.00026 Score=74.95 Aligned_cols=181 Identities=14% Similarity=0.075 Sum_probs=122.1
Q ss_pred HhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCC-cEEEEec
Q 043397 395 QKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGT-STRILLM 471 (596)
Q Consensus 395 ~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~-~V~~~g~ 471 (596)
|..+|++ ++..++.+.++ ..|-...+++..-++.+ |+-.|++.|+..+....+.+++++++.|++. +++|.+.
T Consensus 421 R~~lglp--~~avVf~c~~n--~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~ 496 (620)
T COG3914 421 RAQLGLP--EDAVVFCCFNN--YFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPP 496 (620)
T ss_pred hhhcCCC--CCeEEEEecCC--cccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCC
Confidence 5678886 66666666666 46666677776655544 7889988887334566788999999999864 7999999
Q ss_pred cCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEe-------CCCCccccccccCCCCCCCccceEEEeCCCH
Q 043397 472 YSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVR-------KTGGLADTVFDVDDPSNHEKANGFVFEGIDE 544 (596)
Q Consensus 472 ~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s-------~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~ 544 (596)
.+.++-...|.-||+++-+.-| +-..+.+||+-+|+|||+. ..|+ .++.. -|..-+++. +.
T Consensus 497 ~~~~~h~a~~~iADlvLDTyPY-~g~TTa~daLwm~vPVlT~~G~~FasR~~~--si~~~-------agi~e~vA~--s~ 564 (620)
T COG3914 497 APNEDHRARYGIADLVLDTYPY-GGHTTASDALWMGVPVLTRVGEQFASRNGA--SIATN-------AGIPELVAD--SR 564 (620)
T ss_pred CCCHHHHHhhchhheeeecccC-CCccchHHHHHhcCceeeeccHHHHHhhhH--HHHHh-------cCCchhhcC--CH
Confidence 9999999999999999976555 4578999999999999873 2221 11111 022333333 34
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHHhc
Q 043397 545 GSLNWALDRAFRHFIDKPEEWNRIVQKIME-----NDNSWNNAAGKYMEIYNSIRV 595 (596)
Q Consensus 545 ~~la~~i~~ll~~~~~~~~~~~~~~~~~~~-----~~fs~~~~~~~~~~iy~~l~~ 595 (596)
++..+.=-++-. |...+.+.+....+ --|+.+..++++.++|.++-.
T Consensus 565 ~dYV~~av~~g~----dral~q~~r~~l~~~r~tspL~d~~~far~le~~y~~M~~ 616 (620)
T COG3914 565 ADYVEKAVAFGS----DRALRQQVRAELKRSRQTSPLFDPKAFARKLETLYWGMWS 616 (620)
T ss_pred HHHHHHHHHhcc----cHHHHHhhHHHHHhccccCcccCHHHHHHHHHHHHHHHHH
Confidence 444333222222 55555554422222 258899999999999998743
No 133
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.26 E-value=0.00029 Score=71.92 Aligned_cols=218 Identities=17% Similarity=0.100 Sum_probs=140.6
Q ss_pred cCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhh-cCCCC
Q 043397 324 SNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKG-LGLKS 402 (596)
Q Consensus 324 ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~-l~l~~ 402 (596)
||.-++.++..++.+++.| .+.++|+++-|-+-.....-. + +.......... ++..
T Consensus 146 S~~hfapte~ar~nLl~EG-------~~~~~IfvtGnt~iDal~~~~-~--------------~~~~~~~~~~~~~~~~- 202 (383)
T COG0381 146 SDLHFAPTEIARKNLLREG-------VPEKRIFVTGNTVIDALLNTR-D--------------RVLEDSKILAKGLDDK- 202 (383)
T ss_pred hhhhcCChHHHHHHHHHcC-------CCccceEEeCChHHHHHHHHH-h--------------hhccchhhHHhhhccc-
Confidence 7888999999999998877 456679998876432111100 0 00000111111 2221
Q ss_pred CCCccEEEEEecccc-cCCHHHHHHHHHHHHH--cCCEEEEEecCCCCcchHHHHHHH-HHcCCCCcEEEEeccCHHHHH
Q 043397 403 EGTVPLVVCITRLVA-QKGLHLITHAIKRAEE--LGGQMILLGNSPVHWVQKDFEDLA-NLHNKGTSTRILLMYSEELSH 478 (596)
Q Consensus 403 ~~~~~~il~iGrl~~-~KGi~~ll~A~~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~-~~~~~~~~V~~~g~~~~~~l~ 478 (596)
.++.+++..=|-.- .+++..+++++.++.+ +++.++.-=. ....+++.. +.++..++|.++..+...+..
T Consensus 203 -~~~~iLvT~HRreN~~~~~~~i~~al~~i~~~~~~~~viyp~H-----~~~~v~e~~~~~L~~~~~v~li~pl~~~~f~ 276 (383)
T COG0381 203 -DKKYILVTAHRRENVGEPLEEICEALREIAEEYPDVIVIYPVH-----PRPRVRELVLKRLKNVERVKLIDPLGYLDFH 276 (383)
T ss_pred -cCcEEEEEcchhhcccccHHHHHHHHHHHHHhCCCceEEEeCC-----CChhhhHHHHHHhCCCCcEEEeCCcchHHHH
Confidence 23344444445433 3899999999998877 3455544333 224444444 567777789999999999999
Q ss_pred HHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEe-CCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 479 MLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVR-KTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 479 ~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s-~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
.+++.|-+.+-- .|-.+=||-..|+||++- +.---+|.++. ++-.++.. |.+.+.+++.++++
T Consensus 277 ~L~~~a~~iltD-----SGgiqEEAp~lg~Pvl~lR~~TERPE~v~a---------gt~~lvg~-~~~~i~~~~~~ll~- 340 (383)
T COG0381 277 NLMKNAFLILTD-----SGGIQEEAPSLGKPVLVLRDTTERPEGVEA---------GTNILVGT-DEENILDAATELLE- 340 (383)
T ss_pred HHHHhceEEEec-----CCchhhhHHhcCCcEEeeccCCCCccceec---------CceEEeCc-cHHHHHHHHHHHhh-
Confidence 999999777743 466778999999999994 55556777754 44555544 88999999999998
Q ss_pred ccCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043397 558 FIDKPEEWNRIVQKIMENDNSWNNAAGKYMEIYN 591 (596)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~iy~ 591 (596)
+++.+++|+...- .|.-.+..++.+++.+
T Consensus 341 ---~~~~~~~m~~~~n--pYgdg~as~rIv~~l~ 369 (383)
T COG0381 341 ---DEEFYERMSNAKN--PYGDGNASERIVEILL 369 (383)
T ss_pred ---ChHHHHHHhcccC--CCcCcchHHHHHHHHH
Confidence 8888888775432 3444444455544443
No 134
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.25 E-value=0.00017 Score=74.38 Aligned_cols=118 Identities=13% Similarity=-0.002 Sum_probs=73.6
Q ss_pred ccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCC
Q 043397 406 VPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAAD 485 (596)
Q Consensus 406 ~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aD 485 (596)
..+++|.|. .+...+++++.++ +++.+ |+|+. ....+ ...+++.+.++.+ +++..+|+.||
T Consensus 189 ~~iLv~~g~----~~~~~l~~~l~~~--~~~~~-i~~~~--~~~~~---------~~~~~v~~~~~~~-~~~~~~l~~ad 249 (321)
T TIGR00661 189 DYILVYIGF----EYRYKILELLGKI--ANVKF-VCYSY--EVAKN---------SYNENVEIRRITT-DNFKELIKNAE 249 (321)
T ss_pred CcEEEECCc----CCHHHHHHHHHhC--CCeEE-EEeCC--CCCcc---------ccCCCEEEEECCh-HHHHHHHHhCC
Confidence 345566544 3456677776555 34454 44541 11111 1135799888776 56899999999
Q ss_pred EEEEcCCCCCCchHHHHHHhcCCceEEeCCCCcccc------ccccCCCCCCCccceEEEeCCCHHHHHHHHHHHH
Q 043397 486 IVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADT------VFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAF 555 (596)
Q Consensus 486 i~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~------i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll 555 (596)
++|.-+ -..++.||+++|+|+|.....+..|. +.+ .+.|...+..+. ++.+++...+
T Consensus 250 ~vI~~~----G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~--------~g~~~~l~~~~~-~~~~~~~~~~ 312 (321)
T TIGR00661 250 LVITHG----GFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED--------LGCGIALEYKEL-RLLEAILDIR 312 (321)
T ss_pred EEEECC----ChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH--------CCCEEEcChhhH-HHHHHHHhcc
Confidence 999764 33579999999999999777654442 333 467877776555 4444443333
No 135
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.19 E-value=0.00055 Score=74.40 Aligned_cols=326 Identities=11% Similarity=0.055 Sum_probs=174.8
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeC
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVS 188 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (596)
-||.+++.|. .| ..+..+|.++|.++.-++.+..-..+...+.
T Consensus 227 ~kIfI~AGE~------SG-DlhgA~Li~aLk~~~P~i~~~GvGG~~M~aa------------------------------ 269 (608)
T PRK01021 227 TSCFISAGEH------SG-DTLGGNLLKEIKALYPDIHCFGVGGPQMRAE------------------------------ 269 (608)
T ss_pred CeEEEEeccc------cH-HHHHHHHHHHHHhcCCCcEEEEEccHHHHhC------------------------------
Confidence 4788887654 33 6777889999998877888776554444332
Q ss_pred CeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhh-CCCCcEEEEcCCccchHHHHHHHHhhhccCCC--C
Q 043397 189 SIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVT-GVQPDIIHVHEWQIGALPLLYWDMYQSLSLKK--P 265 (596)
Q Consensus 189 gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~-~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~--~ 265 (596)
|+...+ + .+.+ .+.| -.+-+.++..+.+...+..+.. ..+||++.+-|.+.+.+.+. +.++ ..+ +
T Consensus 270 G~e~l~-d-~~eL----sVmG-~~EVL~~l~~l~~~~~~l~~~i~~~kPD~vIlID~PgFNlrLA-K~lk----k~Gi~i 337 (608)
T PRK01021 270 GFHPLF-N-MEEF----QVSG-FWEVLLALFKLWYRYRKLYKTILKTNPRTVICIDFPDFHFLLI-KKLR----KRGYKG 337 (608)
T ss_pred cCcccC-C-hHHh----hhhh-HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCCHHHH-HHHH----hcCCCC
Confidence 221100 0 0000 0000 0011222222333332333222 37999999888776555433 2211 235 4
Q ss_pred cEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhh
Q 043397 266 RIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLA 345 (596)
Q Consensus 266 pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~ 345 (596)
|+++.+--..+ .+ +++|. +..-++.|.++++=|--.+...+.|
T Consensus 338 pviyYVsPqVW-------------------AW------------R~~Ri---kki~k~vD~ll~IfPFE~~~y~~~g--- 380 (608)
T PRK01021 338 KIVHYVCPSIW-------------------AW------------RPKRK---TILEKYLDLLLLILPFEQNLFKDSP--- 380 (608)
T ss_pred CEEEEECccce-------------------ee------------CcchH---HHHHHHhhhheecCccCHHHHHhcC---
Confidence 88766642221 00 01222 2223457889999886666544333
Q ss_pred hhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccE-EEEEec-ccc-cCCHH
Q 043397 346 SVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPL-VVCITR-LVA-QKGLH 422 (596)
Q Consensus 346 ~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~-il~iGr-l~~-~KGi~ 422 (596)
-++..+-|+.=.. ..+.. ++...++++|++ ++.++ -+..|. -.+ .+.+.
T Consensus 381 -------v~v~yVGHPL~d~-i~~~~------------------~~~~~r~~lgl~--~~~~iIaLLPGSR~~EI~rllP 432 (608)
T PRK01021 381 -------LRTVYLGHPLVET-ISSFS------------------PNLSWKEQLHLP--SDKPIVAAFPGSRRGDILRNLT 432 (608)
T ss_pred -------CCeEEECCcHHhh-cccCC------------------CHHHHHHHcCCC--CCCCEEEEECCCCHHHHHHHHH
Confidence 4555665553211 11110 234457788885 45454 456664 433 45678
Q ss_pred HHHHHHH--HHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHH
Q 043397 423 LITHAIK--RAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQ 500 (596)
Q Consensus 423 ~ll~A~~--~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~ 500 (596)
.+++|++ ++. ++.++++... .+...+.+++..+..+. ..+.+.. .++-.+++++||+.+.. .|.+-
T Consensus 433 v~l~aa~~~~l~-~~l~fvvp~a--~~~~~~~i~~~~~~~~~-~~~~ii~---~~~~~~~m~aaD~aLaa-----SGTaT 500 (608)
T PRK01021 433 IQVQAFLASSLA-STHQLLVSSA--NPKYDHLILEVLQQEGC-LHSHIVP---SQFRYELMRECDCALAK-----CGTIV 500 (608)
T ss_pred HHHHHHHHHHhc-cCeEEEEecC--chhhHHHHHHHHhhcCC-CCeEEec---CcchHHHHHhcCeeeec-----CCHHH
Confidence 8899987 443 3678877543 13334566665543221 1233331 11236899999999976 69999
Q ss_pred HHHHhcCCceEEe-CCCCcc------------------ccccccCCCCCCCccceEE--EeCCCHHHHHHHHHHHHHhcc
Q 043397 501 MIGMRYGAVPVVR-KTGGLA------------------DTVFDVDDPSNHEKANGFV--FEGIDEGSLNWALDRAFRHFI 559 (596)
Q Consensus 501 lEAma~G~pvI~s-~~gg~~------------------e~i~~~~~~~~~~~~~G~l--v~~~d~~~la~~i~~ll~~~~ 559 (596)
+|++.+|+|.|+. ..+.+. .++.+. +-.--++ -+..+++.+++++ +++.
T Consensus 501 LEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr------~VvPEllqgQ~~~tpe~La~~l-~lL~--- 570 (608)
T PRK01021 501 LETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGS------TIFPEFIGGKKDFQPEEVAAAL-DILK--- 570 (608)
T ss_pred HHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCC------CcchhhcCCcccCCHHHHHHHH-HHhc---
Confidence 9999999999983 443222 222110 0011223 1344789999986 7776
Q ss_pred CCHHHHHHHHHH
Q 043397 560 DKPEEWNRIVQK 571 (596)
Q Consensus 560 ~~~~~~~~~~~~ 571 (596)
|++.++++.++
T Consensus 571 -d~~~r~~~~~~ 581 (608)
T PRK01021 571 -TSQSKEKQKDA 581 (608)
T ss_pred -CHHHHHHHHHH
Confidence 77666665543
No 136
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=98.04 E-value=0.0012 Score=63.74 Aligned_cols=159 Identities=13% Similarity=-0.043 Sum_probs=82.8
Q ss_pred HHhhcCCCCCCCccEE---EEEecccccCCHHHHHHHHHHHHH-cCCEEEEEecCCCCcchHHHHH----------HHHH
Q 043397 394 IQKGLGLKSEGTVPLV---VCITRLVAQKGLHLITHAIKRAEE-LGGQMILLGNSPVHWVQKDFED----------LANL 459 (596)
Q Consensus 394 ~~~~l~l~~~~~~~~i---l~iGrl~~~KGi~~ll~A~~~l~~-~~~~lvIvG~~~~g~~~~~l~~----------~~~~ 459 (596)
.|..+... ..++.. +|+||....||+..+++.-+...+ ++..-++-|=...+.-.+-+++ .+.+
T Consensus 170 ~Rstywkd--~se~nmnv~~yigR~Tt~kG~~~mfD~h~~~lK~~~~~t~~~GierS~A~~~i~d~~~~~~y~~~~~~~~ 247 (355)
T PF11440_consen 170 YRSTYWKD--VSEKNMNVNRYIGRQTTWKGPRRMFDLHEKILKPAGFKTIMEGIERSPAKISIKDHGIPYEYYPKLDCDE 247 (355)
T ss_dssp HHHHH-----GGGSEEEEEEEE--SSGGG-HHHHHHHHHHTTTTTT-EEEEE---SSTHHHHHHHTT--EEEE-CTGGGG
T ss_pred HHHHHhhh--hHhhhcccceeeeeeeeecCcHHHhhhHHHhcCCcchhHHhhhhhcCCceeeeecCCcccccCccccccC
Confidence 34444432 345555 899999999999999998887665 5678888885211211111111 0112
Q ss_pred cCCCCc--EEEEeccCHHHHHHHHHhCCEEEEcCC------CCCCchHHHHHHhcCCceEEe-CCCC-ccccccccCCCC
Q 043397 460 HNKGTS--TRILLMYSEELSHMLYAAADIVLVPSI------YEPCGLAQMIGMRYGAVPVVR-KTGG-LADTVFDVDDPS 529 (596)
Q Consensus 460 ~~~~~~--V~~~g~~~~~~l~~~~a~aDi~l~PS~------~E~~gl~~lEAma~G~pvI~s-~~gg-~~e~i~~~~~~~ 529 (596)
..+.+| +-+.|.+-+++..+.++.+-....-+. .+.+-.+.+|..|||+.||-- ..|- .+-.+... ..
T Consensus 248 ~~~~pN~~~~v~~~Yi~~E~~~~Maks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~~GEN~r~~~D~~--~~ 325 (355)
T PF11440_consen 248 PKPAPNSPVPVYGPYIRSEGLERMAKSLFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKSWGENNRFTLDGT--RY 325 (355)
T ss_dssp ---SSS--EEEESS--HHHHHHHHHTEEEEEE-----GGG-SS---HHHHHHHHCTSEEEEEHHHHHHSB-TTTSS--BG
T ss_pred cccCCCCcceecchhhhHHHHHHHhhccceeecHHHHHHHHHhhhhhheeeeeeeceeeeeeccccccceeeecCc--ee
Confidence 233344 788899999999999999988876553 256788999999999988863 2222 11011100 00
Q ss_pred CCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 530 NHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 530 ~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
.+-.-..+.++..|-++-.+.|.++.+
T Consensus 326 ~~~~~~~I~~De~dle~T~ekl~E~a~ 352 (355)
T PF11440_consen 326 IDHPYSAIYFDENDLESTVEKLIEVAN 352 (355)
T ss_dssp GSS--S-EEE-TTSHHHHHHHHHHHHT
T ss_pred eccCcceeEeccchHHHHHHHHHHHhc
Confidence 000234567776676666666666654
No 137
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.02 E-value=0.0035 Score=61.83 Aligned_cols=177 Identities=18% Similarity=0.216 Sum_probs=104.5
Q ss_pred ccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCC----CCcCCCCcCCCccccCCCCchhhhhhHHHHHh
Q 043397 321 IVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDT----VIWNPATDAFLPAKFHAQKPEGKKICKYYIQK 396 (596)
Q Consensus 321 ~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~----~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~ 396 (596)
+..||.+++.+.....+++..| ..+.++ .-+||+.. ..|.|. ..+-+
T Consensus 124 ~Pla~~ii~P~~~~~~~~~~~G-------~~p~~i-~~~~giae~~~v~~f~pd---------------------~evlk 174 (346)
T COG1817 124 LPLADVIITPEAIDEEELLDFG-------ADPNKI-SGYNGIAELANVYGFVPD---------------------PEVLK 174 (346)
T ss_pred hhhhhheecccccchHHHHHhC-------CCccce-ecccceeEEeecccCCCC---------------------HHHHH
Confidence 3448889998877777776655 333343 33556542 224443 24557
Q ss_pred hcCCCCCCCccEEEE--E--e--cccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEe
Q 043397 397 GLGLKSEGTVPLVVC--I--T--RLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILL 470 (596)
Q Consensus 397 ~l~l~~~~~~~~il~--i--G--rl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g 470 (596)
++|+. .+.+.|+. . + -....++++.+.++++.+.+.+ .+++-. +++..+.++.. .+++..-
T Consensus 175 eLgl~--~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~g--iV~ipr--~~~~~eife~~-------~n~i~pk 241 (346)
T COG1817 175 ELGLE--EGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKKYG--IVLIPR--EKEQAEIFEGY-------RNIIIPK 241 (346)
T ss_pred HcCCC--CCCceEEEeeccccceeeccccchhhHHHHHHHHHhCc--EEEecC--chhHHHHHhhh-------ccccCCc
Confidence 88886 44555543 1 1 1344678888899998886644 455544 13333334432 1222222
Q ss_pred ccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCC---CccccccccCCCCCCCccceEEEeCCCHHHH
Q 043397 471 MYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTG---GLADTVFDVDDPSNHEKANGFVFEGIDEGSL 547 (596)
Q Consensus 471 ~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~g---g~~e~i~~~~~~~~~~~~~G~lv~~~d~~~l 547 (596)
..-+ -.+++--|++++ -+.|...-||...|+|.|.+.-| +..+... +.|.++...|+.+.
T Consensus 242 ~~vD--~l~Llyya~lvi-----g~ggTMarEaAlLGtpaIs~~pGkll~vdk~li----------e~G~~~~s~~~~~~ 304 (346)
T COG1817 242 KAVD--TLSLLYYATLVI-----GAGGTMAREAALLGTPAISCYPGKLLAVDKYLI----------EKGLLYHSTDEIAI 304 (346)
T ss_pred cccc--HHHHHhhhheee-----cCCchHHHHHHHhCCceEEecCCccccccHHHH----------hcCceeecCCHHHH
Confidence 2222 234666677776 34567778999999999998744 3444444 37999987787766
Q ss_pred HHHHHHHHH
Q 043397 548 NWALDRAFR 556 (596)
Q Consensus 548 a~~i~~ll~ 556 (596)
.+...+.+.
T Consensus 305 ~~~a~~~l~ 313 (346)
T COG1817 305 VEYAVRNLK 313 (346)
T ss_pred HHHHHHHhh
Confidence 555555554
No 138
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=97.98 E-value=8.2e-05 Score=68.21 Aligned_cols=149 Identities=18% Similarity=0.168 Sum_probs=75.5
Q ss_pred CCeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHH---HHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCC
Q 043397 188 SSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLE---WMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKK 264 (596)
Q Consensus 188 ~gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~---~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~ 264 (596)
+||.++.+.++..-......|... .+....-..++.+ .|+..+..||||.+|... .-++.+++. +++
T Consensus 19 ~GV~~~~y~~~~~~~~~~~~~~~~---~e~~~~rg~av~~a~~~L~~~Gf~PDvI~~H~GW--Ge~Lflkdv-----~P~ 88 (171)
T PF12000_consen 19 PGVRVVRYRPPRGPTPGTHPYVRD---FEAAVLRGQAVARAARQLRAQGFVPDVIIAHPGW--GETLFLKDV-----FPD 88 (171)
T ss_pred CCcEEEEeCCCCCCCCCCCccccc---HHHHHHHHHHHHHHHHHHHHcCCCCCEEEEcCCc--chhhhHHHh-----CCC
Confidence 478888777532222222233332 3333222333333 333447899999999622 233445555 789
Q ss_pred CcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchh
Q 043397 265 PRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWL 344 (596)
Q Consensus 265 ~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l 344 (596)
+|++...--.+.... ...++....-...+..+.-| .+-...-.++..||..++.|...+..+
T Consensus 89 a~li~Y~E~~y~~~g------~d~~FDpe~p~~~~~~~~~r------~rN~~~l~~l~~~D~~isPT~wQ~~~f------ 150 (171)
T PF12000_consen 89 APLIGYFEFYYRASG------ADVGFDPEFPPSLDDRARLR------MRNAHNLLALEQADAGISPTRWQRSQF------ 150 (171)
T ss_pred CcEEEEEEEEecCCC------CcCCCCCCCCCCHHHHHHHH------HHhHHHHHHHHhCCcCcCCCHHHHHhC------
Confidence 998765432111000 01122222111111111000 011223455777999999998777663
Q ss_pred hhhhhccCCcEEEeeCCCCCCCc
Q 043397 345 ASVLITHRDKYFGILNGIDTVIW 367 (596)
Q Consensus 345 ~~~~~~~~~ki~vI~nGid~~~~ 367 (596)
...-..||.||+-|||++.+
T Consensus 151 ---P~~~r~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 151 ---PAEFRSKISVIHDGIDTDRF 170 (171)
T ss_pred ---CHHHHcCcEEeecccchhhc
Confidence 11226799999999998754
No 139
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.74 E-value=0.0037 Score=64.65 Aligned_cols=91 Identities=12% Similarity=0.086 Sum_probs=61.2
Q ss_pred ccEEEEEecc--cccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh
Q 043397 406 VPLVVCITRL--VAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA 483 (596)
Q Consensus 406 ~~~il~iGrl--~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~ 483 (596)
..+.++.|.- +-.+-+..+++++.++.+...++++.|. .. .+.+++...+. ..+.+.+ +..+++++
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a---~~-~~~i~~~~~~~---~~~~~~~-----~~~~~m~~ 235 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSF---FK-GKDLKEIYGDI---SEFEISY-----DTHKALLE 235 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCC---Cc-HHHHHHHHhcC---CCcEEec-----cHHHHHHh
Confidence 3445666654 2235567777898888765567888886 32 24555544322 2344443 24679999
Q ss_pred CCEEEEcCCCCCCchHHHHHHhcCCceEEe
Q 043397 484 ADIVLVPSIYEPCGLAQMIGMRYGAVPVVR 513 (596)
Q Consensus 484 aDi~l~PS~~E~~gl~~lEAma~G~pvI~s 513 (596)
||+.+.. .|.+-+|++.+|+|.|..
T Consensus 236 aDlal~~-----SGT~TLE~al~g~P~Vv~ 260 (347)
T PRK14089 236 AEFAFIC-----SGTATLEAALIGTPFVLA 260 (347)
T ss_pred hhHHHhc-----CcHHHHHHHHhCCCEEEE
Confidence 9999876 588888999999999984
No 140
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=97.71 E-value=0.025 Score=56.91 Aligned_cols=140 Identities=17% Similarity=0.160 Sum_probs=84.2
Q ss_pred CCccEEEEEecccccCCHHHHHHHHHHHHH-cCC---EEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHH
Q 043397 404 GTVPLVVCITRLVAQKGLHLITHAIKRAEE-LGG---QMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHM 479 (596)
Q Consensus 404 ~~~~~il~iGrl~~~KGi~~ll~A~~~l~~-~~~---~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~ 479 (596)
++..+++.+|- -+-|-+++..+++.... ++. -++|.|. --..++..++.+.-...++|.+..+.++ ...
T Consensus 218 E~~~Ilvs~GG--G~dG~eLi~~~l~A~~~l~~l~~~~~ivtGP---~MP~~~r~~l~~~A~~~p~i~I~~f~~~--~~~ 290 (400)
T COG4671 218 EGFDILVSVGG--GADGAELIETALAAAQLLAGLNHKWLIVTGP---FMPEAQRQKLLASAPKRPHISIFEFRND--FES 290 (400)
T ss_pred ccceEEEecCC--ChhhHHHHHHHHHHhhhCCCCCcceEEEeCC---CCCHHHHHHHHHhcccCCCeEEEEhhhh--HHH
Confidence 34556777775 35565665555544432 333 3556665 3334555566655555688999999988 889
Q ss_pred HHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCC--CCccccccccCCCCCCC-ccceEEE-eCCCHHHHHHHHHHHH
Q 043397 480 LYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKT--GGLADTVFDVDDPSNHE-KANGFVF-EGIDEGSLNWALDRAF 555 (596)
Q Consensus 480 ~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~--gg~~e~i~~~~~~~~~~-~~~G~lv-~~~d~~~la~~i~~ll 555 (596)
++++|+..|.-.=| ++..|-+++|+|.+.-.. ++-.+++.-. ...+ |--.++- +.-+++.|+++|..++
T Consensus 291 ll~gA~~vVSm~GY----NTvCeILs~~k~aLivPr~~p~eEQliRA~---Rl~~LGL~dvL~pe~lt~~~La~al~~~l 363 (400)
T COG4671 291 LLAGARLVVSMGGY----NTVCEILSFGKPALIVPRAAPREEQLIRAQ---RLEELGLVDVLLPENLTPQNLADALKAAL 363 (400)
T ss_pred HHHhhheeeecccc----hhhhHHHhCCCceEEeccCCCcHHHHHHHH---HHHhcCcceeeCcccCChHHHHHHHHhcc
Confidence 99999999955322 478899999999988433 3332222110 0000 1112222 2235788999998888
Q ss_pred Hh
Q 043397 556 RH 557 (596)
Q Consensus 556 ~~ 557 (596)
+.
T Consensus 364 ~~ 365 (400)
T COG4671 364 AR 365 (400)
T ss_pred cC
Confidence 73
No 141
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=97.71 E-value=0.01 Score=59.07 Aligned_cols=167 Identities=11% Similarity=0.013 Sum_probs=112.8
Q ss_pred CccEEEEEecc-cccCCHHHHHHHHHHHHHcCCEEEEE-ecC-CCCcchHHHHHHHHHcCCCCcEEEE-eccCHHHHHHH
Q 043397 405 TVPLVVCITRL-VAQKGLHLITHAIKRAEELGGQMILL-GNS-PVHWVQKDFEDLANLHNKGTSTRIL-LMYSEELSHML 480 (596)
Q Consensus 405 ~~~~il~iGrl-~~~KGi~~ll~A~~~l~~~~~~lvIv-G~~-~~g~~~~~l~~~~~~~~~~~~V~~~-g~~~~~~l~~~ 480 (596)
+.++.+-+|+= ++--++..+++++.+....++++++- |-+ ++..|.+++++.++++--.+++..+ ..++-++...+
T Consensus 144 ~~~~tIlvGNSgd~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~l 223 (322)
T PRK02797 144 AGKMTILVGNSGDRSNRHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLAL 223 (322)
T ss_pred CCceEEEEeCCCCCcccHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHH
Confidence 34555666764 67778888899998887778887764 321 3356788888888877544677666 89999999999
Q ss_pred HHhCCEEEEcC-CCCCCchHHHHHHhcCCceEEe-CCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhc
Q 043397 481 YAAADIVLVPS-IYEPCGLAQMIGMRYGAVPVVR-KTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHF 558 (596)
Q Consensus 481 ~a~aDi~l~PS-~~E~~gl~~lEAma~G~pvI~s-~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~ 558 (596)
++.||+.++-- +.++.|..++= +..|+||+.+ ++.-..++.+. +.-++++. +.|...+- .
T Consensus 224 L~~~Dl~~f~~~RQQgiGnl~lL-i~~G~~v~l~r~n~fwqdl~e~---------gv~Vlf~~---d~L~~~~v---~-- 285 (322)
T PRK02797 224 LRQCDLGYFIFARQQGIGTLCLL-IQLGKPVVLSRDNPFWQDLTEQ---------GLPVLFTG---DDLDEDIV---R-- 285 (322)
T ss_pred HHhCCEEEEeechhhHHhHHHHH-HHCCCcEEEecCCchHHHHHhC---------CCeEEecC---CcccHHHH---H--
Confidence 99999999876 46888877664 8899999986 66667776654 22333333 23321111 1
Q ss_pred cCCHHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHHHhc
Q 043397 559 IDKPEEWNRIV---QKIMENDNSWNNAAGKYMEIYNSIRV 595 (596)
Q Consensus 559 ~~~~~~~~~~~---~~~~~~~fs~~~~~~~~~~iy~~l~~ 595 (596)
+..+++. ++.+ .|+-++..+.+.+++....+
T Consensus 286 ----e~~rql~~~dk~~I--~Ff~pn~~~~W~~~l~~~~g 319 (322)
T PRK02797 286 ----EAQRQLASVDKNII--AFFSPNYLQGWRNALAIAAG 319 (322)
T ss_pred ----HHHHHHHhhCccee--eecCHhHHHHHHHHHHHhhC
Confidence 1111122 2222 39999999999999886543
No 142
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.58 E-value=0.0066 Score=59.08 Aligned_cols=136 Identities=11% Similarity=0.130 Sum_probs=87.1
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHHcCCEEE-EEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh
Q 043397 405 TVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMI-LLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA 483 (596)
Q Consensus 405 ~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lv-IvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~ 483 (596)
.+-++++.|--++ |+ +.++.++.+.+.++.+. ++|+. .+....+.+.+++ .+++.++-..++ +..++..
T Consensus 158 ~r~ilI~lGGsDp-k~--lt~kvl~~L~~~~~nl~iV~gs~--~p~l~~l~k~~~~---~~~i~~~~~~~d--ma~LMke 227 (318)
T COG3980 158 KRDILITLGGSDP-KN--LTLKVLAELEQKNVNLHIVVGSS--NPTLKNLRKRAEK---YPNINLYIDTND--MAELMKE 227 (318)
T ss_pred hheEEEEccCCCh-hh--hHHHHHHHhhccCeeEEEEecCC--CcchhHHHHHHhh---CCCeeeEecchh--HHHHHHh
Confidence 3446667775444 33 66777777766566664 45541 3455666666665 667888877766 9999999
Q ss_pred CCEEEEcCCCCCCchHHHHHHhcCCceEE----eCCCCccccccccCCCCCCCccceEEEeC---CCHHHHHHHHHHHHH
Q 043397 484 ADIVLVPSIYEPCGLAQMIGMRYGAVPVV----RKTGGLADTVFDVDDPSNHEKANGFVFEG---IDEGSLNWALDRAFR 556 (596)
Q Consensus 484 aDi~l~PS~~E~~gl~~lEAma~G~pvI~----s~~gg~~e~i~~~~~~~~~~~~~G~lv~~---~d~~~la~~i~~ll~ 556 (596)
||+.+.. -|.++.||...|+|.++ .+--..+...+. -|...+. -........+.++.+
T Consensus 228 ~d~aI~A-----aGstlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~----------lg~~~~l~~~l~~~~~~~~~~~i~~ 292 (318)
T COG3980 228 ADLAISA-----AGSTLYEALLLGVPSLVLPLAENQIATAKEFEA----------LGIIKQLGYHLKDLAKDYEILQIQK 292 (318)
T ss_pred cchheec-----cchHHHHHHHhcCCceEEeeeccHHHHHHHHHh----------cCchhhccCCCchHHHHHHHHHhhh
Confidence 9999865 68999999999999433 222222222221 2333222 135667777778877
Q ss_pred hccCCHHHHHHHH
Q 043397 557 HFIDKPEEWNRIV 569 (596)
Q Consensus 557 ~~~~~~~~~~~~~ 569 (596)
|+.++..+.
T Consensus 293 ----d~~~rk~l~ 301 (318)
T COG3980 293 ----DYARRKNLS 301 (318)
T ss_pred ----CHHHhhhhh
Confidence 887776655
No 143
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=97.57 E-value=0.0014 Score=68.75 Aligned_cols=178 Identities=14% Similarity=0.136 Sum_probs=92.3
Q ss_pred eeEEEEeecc---------cccccccCHHHHHhHHHHHHHhc--------CC----eEEEEeccccchhhhhhcccceee
Q 043397 109 MHIIHITAEM---------APIAKVGGLGDVVTGLARACLSR--------GH----TVDIMLPFYECIQKQEISDLALIT 167 (596)
Q Consensus 109 mkIl~is~~~---------~P~~~~GG~~~~~~~La~aL~~~--------Gh----~V~vi~p~~~~~~~~~~~~~~~~~ 167 (596)
.+|++++..- .| .+||.-.++.+++++|.+. |. +|.++|..-+.......+ .
T Consensus 273 f~vvliSpHG~f~q~nvLG~p--DTGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~-----q 345 (550)
T PF00862_consen 273 FNVVLISPHGYFGQENVLGRP--DTGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCN-----Q 345 (550)
T ss_dssp SEEEEE--SS--STTSTTSST--TSSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGT-----S
T ss_pred EEEEEEcCccccccccccCCC--CCCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCcc-----c
Confidence 3899998754 24 5799999999999999863 44 477777322111000000 0
Q ss_pred eEEeecCCceEEEEEEeeeeCCeEEEEEcCCc------cccCCCcccCCChhhHHHHHHHHHHHH-HHHHhhCCCCcEEE
Q 043397 168 TYNSYHDGNWVATNAYHGVVSSIPVIFIEPSN------QFFKGKNVYGGSYNELEAYLFFSRACL-EWMQVTGVQPDIIH 240 (596)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~------~~~~~~~~y~~~~~~~~~~~~f~~~~~-~~l~~~~~~pDVIh 240 (596)
.+.-. ....+..+++++... .+..+..++. -++. |...+. ++....+..||+||
T Consensus 346 ~le~~------------~gt~~a~IlRvPF~~~~gi~~kwisrf~lWP----yLe~---fa~d~~~~i~~e~~~~PdlI~ 406 (550)
T PF00862_consen 346 RLEKV------------SGTENARILRVPFGPEKGILRKWISRFDLWP----YLEE---FADDAEREILAELQGKPDLII 406 (550)
T ss_dssp SEEEE------------TTESSEEEEEE-ESESTEEE-S---GGG-GG----GHHH---HHHHHHHHHHHHHTS--SEEE
T ss_pred ccccc------------CCCCCcEEEEecCCCCcchhhhccchhhchh----hHHH---HHHHHHHHHHHHhCCCCcEEE
Confidence 00000 012456777776321 1111112221 1222 334333 44455678999999
Q ss_pred EcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchh
Q 043397 241 VHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGG 320 (596)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (596)
.|....++++.++... .++|.++|.|...- ......++.++ .++..+ +...++.....+
T Consensus 407 GnYsDgnlvA~LLs~~------lgv~~~~iaHsLek------~Ky~~s~~~w~---e~e~~Y------hfs~qftAd~ia 465 (550)
T PF00862_consen 407 GNYSDGNLVASLLSRK------LGVTQCFIAHSLEK------TKYEDSDLYWK---EIEEKY------HFSCQFTADLIA 465 (550)
T ss_dssp EEHHHHHHHHHHHHHH------HT-EEEEE-SS-HH------HHHHTTTTTSH---HHHHHH-------HHHHHHHHHHH
T ss_pred eccCcchHHHHHHHhh------cCCceehhhhcccc------ccccccCCCHH---HHHhhc------cchhhhhHHHHH
Confidence 9987788888877654 49999999997642 11111222222 112211 223566777889
Q ss_pred ccccCeEEEeChh
Q 043397 321 IVYSNAVVTVSPT 333 (596)
Q Consensus 321 ~~~ad~vi~vS~~ 333 (596)
+..||.|||.+..
T Consensus 466 mn~adfIItST~Q 478 (550)
T PF00862_consen 466 MNAADFIITSTYQ 478 (550)
T ss_dssp HHHSSEEEESSHH
T ss_pred hhcCCEEEEcchH
Confidence 9999999998853
No 144
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=97.52 E-value=0.013 Score=65.87 Aligned_cols=266 Identities=17% Similarity=0.140 Sum_probs=164.0
Q ss_pred CCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccc
Q 043397 235 QPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERL 314 (596)
Q Consensus 235 ~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (596)
.-|+|.+|+.+..++|..+... ..+.++-+..|...+..+ ........
T Consensus 140 ~~d~vwihdyhlmllp~~lr~~-----~~~~~ig~flhspfpssE----i~r~lp~r----------------------- 187 (732)
T KOG1050|consen 140 EGDIVWIHDYHLMLLPQMLRER-----FNSAKIGFFLHSPFPSSE----IYRCLPVR----------------------- 187 (732)
T ss_pred CCCcEEEEcchhhccchhhhcc-----cccceEEEeccCCCChHH----HHHhcccH-----------------------
Confidence 7899999999988888776543 457778788887665211 11110111
Q ss_pred hhhchhccccCeEEEeChhhHHHHhhc-----ch-hhh-------hhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCC
Q 043397 315 SLLKGGIVYSNAVVTVSPTYLKETLCS-----GW-LAS-------VLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHA 381 (596)
Q Consensus 315 ~~~~~~~~~ad~vi~vS~~~~~~~~~~-----g~-l~~-------~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~ 381 (596)
.=+-.++.++|.+-..+.+++..++.. |. ..+ .+..+...+..+|-|+|...+.-....
T Consensus 188 ~eIl~gll~~~~i~f~t~d~arhFls~c~R~l~~~~~s~~~~~~v~~rgr~~~v~~~pigid~~r~v~~~~~-------- 259 (732)
T KOG1050|consen 188 KEILRGLLYDDLLGFHTDDYARHFLSTCSRLLGLEVASKFPTAGVSGRGRDVSVKALPIGIDVQRFVKLLEL-------- 259 (732)
T ss_pred HHHHHhhhccCccccccccHHHHHHHHHHHHHHhhhhccCCcceEEeccceeeeeecccccchHHhhccccc--------
Confidence 111224555777777777666655421 00 000 011112345556777776655322110
Q ss_pred CCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHHc------CCEEEEEec--CCCCcchHHH
Q 043397 382 QKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEEL------GGQMILLGN--SPVHWVQKDF 453 (596)
Q Consensus 382 ~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~------~~~lvIvG~--~~~g~~~~~l 453 (596)
.....-...++..+ .++.+++.+-|++.-||+..=+.|++++.+. .+.++.+.. ..++..-+.+
T Consensus 260 ---~~~~~~~~ei~~~~-----~g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~~~kVvliqi~~~~~~~~~~v~~~ 331 (732)
T KOG1050|consen 260 ---PYVGSKGMEIKEPF-----KGKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEWIDKVVLIQIENPKRTDGKEVEEL 331 (732)
T ss_pred ---hhHHHHHHHHhhhc-----cCCceEecccccccccCchHHHHHHHHHHHhChhhhceEEEEEEecCCcccchHHHHH
Confidence 00011112222222 4677889999999999999888888888652 344444333 2334322222
Q ss_pred HH----HHH----HcCCC--CcEE-EEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcC----CceEEeCCCCc
Q 043397 454 ED----LAN----LHNKG--TSTR-ILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYG----AVPVVRKTGGL 518 (596)
Q Consensus 454 ~~----~~~----~~~~~--~~V~-~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G----~pvI~s~~gg~ 518 (596)
+. ... +++-. ..|+ +.-.++..++.++++.+|+.++.+..+|..++.+|+.+|. .+.|.+..-|.
T Consensus 332 k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~rdGmnl~~~e~i~~~~~~~~~lVlsef~G~ 411 (732)
T KOG1050|consen 332 KFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSWRDGMNLVFLEYILCQENKKSVLVLSEFIGD 411 (732)
T ss_pred HHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeecccccccchhhhHHHHhhcccCCceEEeeeccc
Confidence 22 222 22222 1243 4478999999999999999999999999999999998874 45677777777
Q ss_pred cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhc
Q 043397 519 ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHF 558 (596)
Q Consensus 519 ~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~ 558 (596)
.++.++ ...++.|-|.+.++..|..++++.
T Consensus 412 ~~tl~d----------~aivvnpw~~~~~~~~i~~al~~s 441 (732)
T KOG1050|consen 412 DTTLED----------AAIVVNPWDGDEFAILISKALTMS 441 (732)
T ss_pred cccccc----------cCEEECCcchHHHHHHHHHHhhcC
Confidence 777755 567888999999999999999854
No 145
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=97.48 E-value=0.0039 Score=65.59 Aligned_cols=189 Identities=14% Similarity=0.065 Sum_probs=95.9
Q ss_pred ccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCC--CCcCCCCcCCCccccCCCCchhhhhhHHHHHhhc
Q 043397 321 IVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDT--VIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGL 398 (596)
Q Consensus 321 ~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~--~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l 398 (596)
....|.+++.|+...+.+. +.++.+.+++.+ .|..- ..+... ...++.+++.+
T Consensus 132 ~~~~d~~~~~s~~~~~~~~------~~f~~~~~~i~~--~G~PR~D~l~~~~-----------------~~~~~~i~~~~ 186 (369)
T PF04464_consen 132 YRNYDYFIVSSEFEKEIFK------KAFGYPEDKILV--TGYPRNDYLFNKS-----------------KENRNRIKKKL 186 (369)
T ss_dssp HTT-SEEEESSHHHHHHHH------HHTT--GGGEEE--S--GGGHHHHHST-----------------T-HHHHHHHHT
T ss_pred ccCCcEEEECCHHHHHHHH------HHhccCcceEEE--eCCCeEhHHhccC-----------------HHHHHHHHHHh
Confidence 4557899999987777643 334455555544 44321 111111 11256777888
Q ss_pred CCCCCCCccEEEEEecccccCCH------HHH--HHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEe
Q 043397 399 GLKSEGTVPLVVCITRLVAQKGL------HLI--THAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILL 470 (596)
Q Consensus 399 ~l~~~~~~~~il~iGrl~~~KGi------~~l--l~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g 470 (596)
+++ .++.+|+|+-........ ... ++.+..+.+.++.+++-.. .......... ....++|.+..
T Consensus 187 ~~~--~~~k~ILyaPT~R~~~~~~~~~~~~~~~~~~~l~~~~~~~~~li~k~H---p~~~~~~~~~---~~~~~~i~~~~ 258 (369)
T PF04464_consen 187 GID--KDKKVILYAPTWRDNSSNEYFKFFFSDLDFEKLNFLLKNNYVLIIKPH---PNMKKKFKDF---KEDNSNIIFVS 258 (369)
T ss_dssp T----SS-EEEEEE----GGG--GGSS----TT-HHHHHHHHTTTEEEEE--S---HHHHTT-------TT-TTTEEE-T
T ss_pred ccC--CCCcEEEEeeccccccccccccccccccCHHHHHHHhCCCcEEEEEeC---chhhhchhhh---hccCCcEEECC
Confidence 886 677799998655332221 222 2333334446778777776 2222222211 23345787776
Q ss_pred ccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEe--CCCCc---cccccccCCCCCCCccceEEEeCCCHH
Q 043397 471 MYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVR--KTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEG 545 (596)
Q Consensus 471 ~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s--~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~ 545 (596)
... ++.+++..||++|.= ++-+++|++.+++|+|-. |.... +....++. +...|-.+. +.+
T Consensus 259 ~~~--~~~~ll~~aDiLITD-----ySSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~-----~~~pg~~~~--~~~ 324 (369)
T PF04464_consen 259 DNE--DIYDLLAAADILITD-----YSSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYE-----EDLPGPIVY--NFE 324 (369)
T ss_dssp T-S---HHHHHHT-SEEEES-----S-THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TT-----TSSSS-EES--SHH
T ss_pred CCC--CHHHHHHhcCEEEEe-----chhHHHHHHHhCCCEEEEeccHHHHhhccCCCCchH-----hhCCCceeC--CHH
Confidence 555 489999999999953 778999999999999963 33111 11121211 134576775 799
Q ss_pred HHHHHHHHHHH
Q 043397 546 SLNWALDRAFR 556 (596)
Q Consensus 546 ~la~~i~~ll~ 556 (596)
+|.++|..+++
T Consensus 325 eL~~~i~~~~~ 335 (369)
T PF04464_consen 325 ELIEAIENIIE 335 (369)
T ss_dssp HHHHHHTTHHH
T ss_pred HHHHHHHhhhh
Confidence 99999999887
No 146
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.27 E-value=0.094 Score=50.64 Aligned_cols=108 Identities=10% Similarity=-0.021 Sum_probs=66.3
Q ss_pred CCccEEEEEecccccCCH-----HHHHHHHHHHHH-cCCEEEEEecCCCCcchHHHHHHHHH-cCCCCcEEEEec-cCHH
Q 043397 404 GTVPLVVCITRLVAQKGL-----HLITHAIKRAEE-LGGQMILLGNSPVHWVQKDFEDLANL-HNKGTSTRILLM-YSEE 475 (596)
Q Consensus 404 ~~~~~il~iGrl~~~KGi-----~~ll~A~~~l~~-~~~~lvIvG~~~~g~~~~~l~~~~~~-~~~~~~V~~~g~-~~~~ 475 (596)
+...+-+++|.-.++-.. +.+..++.+..+ .++.|++--+ -...+..+...+. ++-.+-+.+-+. ....
T Consensus 160 ~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfS---RRTp~~~~s~l~~~l~s~~~i~w~~~d~g~N 236 (329)
T COG3660 160 PRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFS---RRTPDTVKSILKNNLNSSPGIVWNNEDTGYN 236 (329)
T ss_pred CCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEee---cCCcHHHHHHHHhccccCceeEeCCCCCCCC
Confidence 566677888865544433 333444433333 5778888776 5556666666654 333334444443 1222
Q ss_pred HHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC
Q 043397 476 LSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG 517 (596)
Q Consensus 476 ~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg 517 (596)
=...++++||.++.+...- ..+.||.+.|+||-+..-.+
T Consensus 237 PY~~~La~Adyii~TaDSi---nM~sEAasTgkPv~~~~~~~ 275 (329)
T COG3660 237 PYIDMLAAADYIISTADSI---NMCSEAASTGKPVFILEPPN 275 (329)
T ss_pred chHHHHhhcceEEEecchh---hhhHHHhccCCCeEEEecCC
Confidence 3789999999999875432 24679999999998854433
No 147
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=97.05 E-value=0.45 Score=48.30 Aligned_cols=117 Identities=9% Similarity=-0.024 Sum_probs=83.3
Q ss_pred ccEEEEEecc-cccCCHHHHHHHHHHHHHcCCEEEEE-ecC-CCCcchHHHHHHHHHcCCCCcEEEE-eccCHHHHHHHH
Q 043397 406 VPLVVCITRL-VAQKGLHLITHAIKRAEELGGQMILL-GNS-PVHWVQKDFEDLANLHNKGTSTRIL-LMYSEELSHMLY 481 (596)
Q Consensus 406 ~~~il~iGrl-~~~KGi~~ll~A~~~l~~~~~~lvIv-G~~-~~g~~~~~l~~~~~~~~~~~~V~~~-g~~~~~~l~~~~ 481 (596)
.++-+-+|+= ++.-++-.+++++++....++++++- |-. ++..|.+++++.++++--.+++..+ .+++-++...++
T Consensus 184 ~~ltILvGNSgd~sNnHieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL 263 (360)
T PF07429_consen 184 GKLTILVGNSGDPSNNHIEALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALL 263 (360)
T ss_pred CceEEEEcCCCCCCccHHHHHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHH
Confidence 4455556654 66777888888887755567777663 330 1235777788888776444577765 799999999999
Q ss_pred HhCCEEEEcCC-CCCCchHHHHHHhcCCceEEeCCCC-cccccc
Q 043397 482 AAADIVLVPSI-YEPCGLAQMIGMRYGAVPVVRKTGG-LADTVF 523 (596)
Q Consensus 482 a~aDi~l~PS~-~E~~gl~~lEAma~G~pvI~s~~gg-~~e~i~ 523 (596)
+.||++++... ..+.|..++ .+.+|+||+.+...- ..++.+
T Consensus 264 ~~cDl~if~~~RQQgiGnI~l-Ll~~G~~v~L~~~np~~~~l~~ 306 (360)
T PF07429_consen 264 SRCDLGIFNHNRQQGIGNICL-LLQLGKKVFLSRDNPFWQDLKE 306 (360)
T ss_pred HhCCEEEEeechhhhHhHHHH-HHHcCCeEEEecCChHHHHHHh
Confidence 99999999975 688887665 489999999975544 444443
No 148
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=96.80 E-value=0.0086 Score=59.67 Aligned_cols=43 Identities=21% Similarity=0.167 Sum_probs=36.2
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFY 152 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~ 152 (596)
|+|++++...+|+ ..||++..+++|.+.+-+.-+.|..+++..
T Consensus 1 ~~V~ll~EGtYPy-v~GGVSsW~~~LI~glpe~~F~v~~i~a~~ 43 (268)
T PF11997_consen 1 MDVCLLTEGTYPY-VRGGVSSWVHQLIRGLPEHEFHVYAIGANP 43 (268)
T ss_pred CeEEEEecCcCCC-CCCchhHHHHHHHhcCCCceEEEEEEeCCc
Confidence 8999999999999 699999999999999877555666666543
No 149
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=96.63 E-value=0.00019 Score=66.33 Aligned_cols=96 Identities=16% Similarity=0.222 Sum_probs=59.1
Q ss_pred CcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCcc--ccccccCCCCCCCccceEEEeC
Q 043397 464 TSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLA--DTVFDVDDPSNHEKANGFVFEG 541 (596)
Q Consensus 464 ~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~--e~i~~~~~~~~~~~~~G~lv~~ 541 (596)
.+|.+.++.++ +.++++.||++|.- +-+.++.|++++|+|.|.-...+.. +...+ .....+.+.|..+..
T Consensus 55 ~~v~~~~~~~~--m~~~m~~aDlvIs~----aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~n--a~~~~~~g~~~~~~~ 126 (167)
T PF04101_consen 55 PNVKVFGFVDN--MAELMAAADLVISH----AGAGTIAEALALGKPAIVIPLPGAADNHQEEN--AKELAKKGAAIMLDE 126 (167)
T ss_dssp CCCEEECSSSS--HHHHHHHHSEEEEC----S-CHHHHHHHHCT--EEEE--TTT-T-CHHHH--HHHHHHCCCCCCSEC
T ss_pred CcEEEEechhh--HHHHHHHcCEEEeC----CCccHHHHHHHcCCCeeccCCCCcchHHHHHH--HHHHHHcCCccccCc
Confidence 68999999987 89999999999953 4568999999999999885554421 11111 000000223333332
Q ss_pred --CCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q 043397 542 --IDEGSLNWALDRAFRHFIDKPEEWNRIVQK 571 (596)
Q Consensus 542 --~d~~~la~~i~~ll~~~~~~~~~~~~~~~~ 571 (596)
.+++.|.++|..+++ ++.....+.++
T Consensus 127 ~~~~~~~L~~~i~~l~~----~~~~~~~~~~~ 154 (167)
T PF04101_consen 127 SELNPEELAEAIEELLS----DPEKLKEMAKA 154 (167)
T ss_dssp CC-SCCCHHHHHHCHCC----CHH-SHHHCCC
T ss_pred ccCCHHHHHHHHHHHHc----CcHHHHHHHHH
Confidence 236789999999887 77766665543
No 150
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.56 E-value=0.29 Score=49.96 Aligned_cols=119 Identities=14% Similarity=0.016 Sum_probs=75.3
Q ss_pred HHHHHhhcCCCCCCCccEEEEEecccccC--CHH---HHHHHHHHHHH-cCCEEEEEecCCCCcchHHHHHH-HHHcCCC
Q 043397 391 KYYIQKGLGLKSEGTVPLVVCITRLVAQK--GLH---LITHAIKRAEE-LGGQMILLGNSPVHWVQKDFEDL-ANLHNKG 463 (596)
Q Consensus 391 k~~~~~~l~l~~~~~~~~il~iGrl~~~K--Gi~---~ll~A~~~l~~-~~~~lvIvG~~~~g~~~~~l~~~-~~~~~~~ 463 (596)
...+..+++-. +...+.+.+|.-+..- +-+ .+++.+..+.+ .+.++.|..+ .......++. .+.+...
T Consensus 134 ~~~~~~~~~~l--~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttS---RRTp~~~~~~L~~~~~~~ 208 (311)
T PF06258_consen 134 AAAWAPRLAAL--PRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTS---RRTPPEAEAALRELLKDN 208 (311)
T ss_pred HHhhhhhhccC--CCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcC---CCCcHHHHHHHHHhhcCC
Confidence 34444555432 4555566777533222 233 45555555544 4679999988 4444444443 3333345
Q ss_pred CcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC
Q 043397 464 TSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG 517 (596)
Q Consensus 464 ~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg 517 (596)
+.+.++..-++.-+..+|+.||.++++... -..+.||.+.|+||.+....+
T Consensus 209 ~~~~~~~~~~~nPy~~~La~ad~i~VT~DS---vSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 209 PGVYIWDGTGENPYLGFLAAADAIVVTEDS---VSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred CceEEecCCCCCcHHHHHHhCCEEEEcCcc---HHHHHHHHHcCCCEEEecCCC
Confidence 677666666666688999999999988443 335789999999999987766
No 151
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=96.52 E-value=0.061 Score=58.95 Aligned_cols=129 Identities=9% Similarity=0.017 Sum_probs=85.7
Q ss_pred ccEEEEEecccc-----cCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHH
Q 043397 406 VPLVVCITRLVA-----QKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHML 480 (596)
Q Consensus 406 ~~~il~iGrl~~-----~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~ 480 (596)
.++++..|.... .+-+..+++|++++ +.++++..+ +...+ .++.+||.+.+++|..+ +
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l---~~~viw~~~---~~~~~--------~~~p~Nv~i~~w~Pq~~---l 359 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKL---PYNVLWKYD---GEVEA--------INLPANVLTQKWFPQRA---V 359 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhC---CCeEEEEEC---CCcCc--------ccCCCceEEecCCCHHH---H
Confidence 467788888643 22345556666554 467766554 22111 12356899999999854 5
Q ss_pred H--HhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEeCC--CHHHHHHHHH
Q 043397 481 Y--AAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFEGI--DEGSLNWALD 552 (596)
Q Consensus 481 ~--a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~~~--d~~~la~~i~ 552 (596)
+ ..++++| .-+...++.||+.+|+|.|+-...+ ....++. .+.|...+.. +.+++.++|.
T Consensus 360 L~hp~v~~fI----tHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~--------~G~G~~l~~~~~t~~~l~~ai~ 427 (507)
T PHA03392 360 LKHKNVKAFV----TQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVE--------LGIGRALDTVTVSAAQLVLAIV 427 (507)
T ss_pred hcCCCCCEEE----ecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHH--------cCcEEEeccCCcCHHHHHHHHH
Confidence 6 5588888 3466778999999999999954433 3333333 4678777643 5789999999
Q ss_pred HHHHhccCCHHHHHH
Q 043397 553 RAFRHFIDKPEEWNR 567 (596)
Q Consensus 553 ~ll~~~~~~~~~~~~ 567 (596)
++++ |+...++
T Consensus 428 ~vl~----~~~y~~~ 438 (507)
T PHA03392 428 DVIE----NPKYRKN 438 (507)
T ss_pred HHhC----CHHHHHH
Confidence 9997 7654444
No 152
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.51 E-value=0.59 Score=49.93 Aligned_cols=136 Identities=11% Similarity=0.115 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHcCCEEEEEecCC-----CCcchHHHHHHHHHcCCCCcEEE-EeccCHHHHHHHHHhCCEEEEcCCCCC
Q 043397 422 HLITHAIKRAEELGGQMILLGNSP-----VHWVQKDFEDLANLHNKGTSTRI-LLMYSEELSHMLYAAADIVLVPSIYEP 495 (596)
Q Consensus 422 ~~ll~A~~~l~~~~~~lvIvG~~~-----~g~~~~~l~~~~~~~~~~~~V~~-~g~~~~~~l~~~~a~aDi~l~PS~~E~ 495 (596)
..+.+++..+.+.+.+++++-... ........+++.+.+....++++ ....+..++..++++||+++-.-.+
T Consensus 260 ~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig~RlH-- 337 (426)
T PRK10017 260 KAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVSDPARYHVVMDELNDLEMGKILGACELTVGTRLH-- 337 (426)
T ss_pred HHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhcccccceeEecCCCChHHHHHHHhhCCEEEEecch--
Confidence 345556666655677776665421 01222333555555554444444 3556777888999999999855444
Q ss_pred CchHHHHHHhcCCceEEeCCC-CccccccccCCCCCCCccceEEEe--CCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 043397 496 CGLAQMIGMRYGAVPVVRKTG-GLADTVFDVDDPSNHEKANGFVFE--GIDEGSLNWALDRAFRHFIDKPEEWNRIVQKI 572 (596)
Q Consensus 496 ~gl~~lEAma~G~pvI~s~~g-g~~e~i~~~~~~~~~~~~~G~lv~--~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~ 572 (596)
.++=|++.|+|+|+-... -...+..+. +...++++ .-+.++|.+.+.++++ +.+.+++.-++.
T Consensus 338 ---a~I~a~~~gvP~i~i~Y~~K~~~~~~~l-------g~~~~~~~~~~l~~~~Li~~v~~~~~----~r~~~~~~l~~~ 403 (426)
T PRK10017 338 ---SAIISMNFGTPAIAINYEHKSAGIMQQL-------GLPEMAIDIRHLLDGSLQAMVADTLG----QLPALNARLAEA 403 (426)
T ss_pred ---HHHHHHHcCCCEEEeeehHHHHHHHHHc-------CCccEEechhhCCHHHHHHHHHHHHh----CHHHHHHHHHHH
Confidence 567889999999994433 244444442 22334333 3357789999999998 766655544333
Q ss_pred H
Q 043397 573 M 573 (596)
Q Consensus 573 ~ 573 (596)
+
T Consensus 404 v 404 (426)
T PRK10017 404 V 404 (426)
T ss_pred H
Confidence 3
No 153
>PLN02448 UDP-glycosyltransferase family protein
Probab=95.96 E-value=0.21 Score=54.06 Aligned_cols=130 Identities=5% Similarity=-0.014 Sum_probs=77.9
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhC
Q 043397 405 TVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAA 484 (596)
Q Consensus 405 ~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~a 484 (596)
...+++..|..... ..+.+-+.+.-+.+.+..++++.. +. ...+.+.. .+++.+.++.++.+ +++.+
T Consensus 274 ~~vvyvsfGs~~~~-~~~~~~~~~~~l~~~~~~~lw~~~---~~-~~~~~~~~-----~~~~~v~~w~pQ~~---iL~h~ 340 (459)
T PLN02448 274 GSVLYVSLGSFLSV-SSAQMDEIAAGLRDSGVRFLWVAR---GE-ASRLKEIC-----GDMGLVVPWCDQLK---VLCHS 340 (459)
T ss_pred CceEEEeecccccC-CHHHHHHHHHHHHhCCCCEEEEEc---Cc-hhhHhHhc-----cCCEEEeccCCHHH---HhccC
Confidence 45677788876432 233333334444445778887665 22 12232222 23677789999855 56667
Q ss_pred CEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEe-------CCCHHHHHHHHHH
Q 043397 485 DIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFE-------GIDEGSLNWALDR 553 (596)
Q Consensus 485 Di~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~-------~~d~~~la~~i~~ 553 (596)
++.++-+ -+-..+++||+.+|+|.|+-...+ ....+.+. -+.|+-+. .-+.+++.+++++
T Consensus 341 ~v~~fvt--HgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~-------~g~G~~~~~~~~~~~~~~~~~l~~av~~ 411 (459)
T PLN02448 341 SVGGFWT--HCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVED-------WKIGWRVKREVGEETLVGREEIAELVKR 411 (459)
T ss_pred ccceEEe--cCchhHHHHHHHcCCCEEeccccccchhhHHHHHHH-------hCceEEEecccccCCcCcHHHHHHHHHH
Confidence 7633222 234568999999999999955443 33334331 13566653 1367899999999
Q ss_pred HHH
Q 043397 554 AFR 556 (596)
Q Consensus 554 ll~ 556 (596)
++.
T Consensus 412 vl~ 414 (459)
T PLN02448 412 FMD 414 (459)
T ss_pred Hhc
Confidence 996
No 154
>PLN03004 UDP-glycosyltransferase
Probab=95.64 E-value=0.3 Score=52.55 Aligned_cols=134 Identities=7% Similarity=0.011 Sum_probs=80.8
Q ss_pred CCccEEEEEeccc--ccCCHHHHHHHHHHHHHcCCEEEEEecCCCC------c----chHHHHHHHHHcCCCCcEEEEec
Q 043397 404 GTVPLVVCITRLV--AQKGLHLITHAIKRAEELGGQMILLGNSPVH------W----VQKDFEDLANLHNKGTSTRILLM 471 (596)
Q Consensus 404 ~~~~~il~iGrl~--~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g------~----~~~~l~~~~~~~~~~~~V~~~g~ 471 (596)
++..+++..|.+. +.+-+..|..+++.. +..|+.+=....+ . ..+.+++..+ ..++++.++
T Consensus 269 ~~sVvyvsfGS~~~~~~~q~~ela~gL~~s---~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~----~~g~~v~~W 341 (451)
T PLN03004 269 EKSVVFLCFGSLGLFSKEQVIEIAVGLEKS---GQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTE----DKGMVVKSW 341 (451)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHC---CCCEEEEEcCCccccccccchhhhCChHHHHhcc----CCcEEEEee
Confidence 3567778888872 233344444555443 4466554431101 0 1122333322 357899999
Q ss_pred cCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCC----CccccccccCCCCCCCccceEEEeC-----C
Q 043397 472 YSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTG----GLADTVFDVDDPSNHEKANGFVFEG-----I 542 (596)
Q Consensus 472 ~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~g----g~~e~i~~~~~~~~~~~~~G~lv~~-----~ 542 (596)
+|+.+ +++.+++..+-+. +--++++||+++|+|+|+-... .....+.+. .+.|+.++. -
T Consensus 342 ~PQ~~---iL~H~~v~~FvTH--~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~-------~g~g~~l~~~~~~~~ 409 (451)
T PLN03004 342 APQVP---VLNHKAVGGFVTH--CGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDE-------IKIAISMNESETGFV 409 (451)
T ss_pred CCHHH---HhCCCccceEecc--CcchHHHHHHHcCCCEEeccccccchhhHHHHHHH-------hCceEEecCCcCCcc
Confidence 99954 7888888554433 3345899999999999995433 333344321 256766642 2
Q ss_pred CHHHHHHHHHHHHH
Q 043397 543 DEGSLNWALDRAFR 556 (596)
Q Consensus 543 d~~~la~~i~~ll~ 556 (596)
+.+++.++|++++.
T Consensus 410 ~~e~l~~av~~vm~ 423 (451)
T PLN03004 410 SSTEVEKRVQEIIG 423 (451)
T ss_pred CHHHHHHHHHHHhc
Confidence 68999999999996
No 155
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=95.53 E-value=0.38 Score=52.24 Aligned_cols=133 Identities=14% Similarity=0.058 Sum_probs=74.6
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEec-CCCC-----cchHHHHHHHHHcCCCCcEEEEeccCHHHHH
Q 043397 405 TVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGN-SPVH-----WVQKDFEDLANLHNKGTSTRILLMYSEELSH 478 (596)
Q Consensus 405 ~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~-~~~g-----~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~ 478 (596)
...+++..|.+..... +.+.+.+.-+.+.+..|+++-. ..+. ...+.+++..+ ..++++.+++++.+
T Consensus 283 ~svVyvsfGS~~~~~~-~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~----~~g~~v~~w~PQ~~-- 355 (477)
T PLN02863 283 HKVVYVCFGSQVVLTK-EQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVA----GRGLVIRGWAPQVA-- 355 (477)
T ss_pred CceEEEEeeceecCCH-HHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHhc----cCCEEecCCCCHHH--
Confidence 4556778887643221 3333333334344667665543 1110 11122332222 34688889999854
Q ss_pred HHHHh--CCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEeC-----CCHHHH
Q 043397 479 MLYAA--ADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFEG-----IDEGSL 547 (596)
Q Consensus 479 ~~~a~--aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~~-----~d~~~l 547 (596)
+++. +++||. -+-..+.+||+++|+|.|+-...+ ....+.+. -+.|+.+.. -+.+++
T Consensus 356 -vL~h~~v~~fvt----H~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~-------~gvG~~~~~~~~~~~~~~~v 423 (477)
T PLN02863 356 -ILSHRAVGAFLT----HCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDE-------LKVAVRVCEGADTVPDSDEL 423 (477)
T ss_pred -HhcCCCcCeEEe----cCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHh-------hceeEEeccCCCCCcCHHHH
Confidence 5655 556662 244568999999999999954332 33333221 256665521 257889
Q ss_pred HHHHHHHHH
Q 043397 548 NWALDRAFR 556 (596)
Q Consensus 548 a~~i~~ll~ 556 (596)
.+++.+++.
T Consensus 424 ~~~v~~~m~ 432 (477)
T PLN02863 424 ARVFMESVS 432 (477)
T ss_pred HHHHHHHhh
Confidence 999988873
No 156
>PLN02670 transferase, transferring glycosyl groups
Probab=95.21 E-value=0.72 Score=49.96 Aligned_cols=165 Identities=8% Similarity=0.063 Sum_probs=93.5
Q ss_pred CCccEEEEEecccc--cCCHHHHHHHHHHHHHcCCEEEEEecCCCC-------cchHHHHHHHHHcCCCCcEEEEeccCH
Q 043397 404 GTVPLVVCITRLVA--QKGLHLITHAIKRAEELGGQMILLGNSPVH-------WVQKDFEDLANLHNKGTSTRILLMYSE 474 (596)
Q Consensus 404 ~~~~~il~iGrl~~--~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g-------~~~~~l~~~~~~~~~~~~V~~~g~~~~ 474 (596)
++..++++.|.+.. ..-+..|..+++.+ +..|+++=....+ ...+.+++.++ ...+++.++.++
T Consensus 277 ~~sVvyvsfGS~~~l~~~q~~ela~gl~~s---~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~----~rG~vv~~W~PQ 349 (472)
T PLN02670 277 VNSVVYVALGTEASLRREEVTELALGLEKS---ETPFFWVLRNEPGTTQNALEMLPDGFEERVK----GRGMIHVGWVPQ 349 (472)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHC---CCCEEEEEcCCcccccchhhcCChHHHHhcc----CCCeEEeCcCCH
Confidence 34667788887742 23344444444443 4466655331101 12223333322 224788899998
Q ss_pred HHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEeC------CCH
Q 043397 475 ELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFEG------IDE 544 (596)
Q Consensus 475 ~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~~------~d~ 544 (596)
.+ +++...+..+-+. +--.+++||+.+|+|+|+-...+ -...+.+ .+.|+.+.. -+.
T Consensus 350 ~~---IL~H~~v~~FvtH--cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~--------~g~Gv~l~~~~~~~~~~~ 416 (472)
T PLN02670 350 VK---ILSHESVGGFLTH--CGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHG--------KKLGLEVPRDERDGSFTS 416 (472)
T ss_pred HH---HhcCcccceeeec--CCcchHHHHHHcCCCEEeCcchhccHHHHHHHHH--------cCeeEEeeccccCCcCcH
Confidence 54 6766666443332 33468999999999999954333 3334433 467777743 258
Q ss_pred HHHHHHHHHHHHhccCCH--HHHHHHH---HHHHHhcCCHHHHHHHHHHHHHH
Q 043397 545 GSLNWALDRAFRHFIDKP--EEWNRIV---QKIMENDNSWNNAAGKYMEIYNS 592 (596)
Q Consensus 545 ~~la~~i~~ll~~~~~~~--~~~~~~~---~~~~~~~fs~~~~~~~~~~iy~~ 592 (596)
+++.++|++++. ++ +.+++.. ++.++..=..+++++.+++...+
T Consensus 417 e~i~~av~~vm~----~~~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~ 465 (472)
T PLN02670 417 DSVAESVRLAMV----DDAGEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLRE 465 (472)
T ss_pred HHHHHHHHHHhc----CcchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHH
Confidence 899999999996 43 1222222 22223455666677777765554
No 157
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.08 E-value=0.41 Score=49.52 Aligned_cols=111 Identities=16% Similarity=0.097 Sum_probs=74.8
Q ss_pred HHHHHhhcCCCCCCCccE-EEEEec-ccccCC--HHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcE
Q 043397 391 KYYIQKGLGLKSEGTVPL-VVCITR-LVAQKG--LHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTST 466 (596)
Q Consensus 391 k~~~~~~l~l~~~~~~~~-il~iGr-l~~~KG--i~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V 466 (596)
+..+.+.+++. .++++ ++..|. ..+.|. .+...+.++.+.+.+.++++.|+ ..+.+..+++.+..+. ..+
T Consensus 161 ~~~~~~~~~~~--~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~---~~e~~~~~~i~~~~~~-~~~ 234 (334)
T TIGR02195 161 QAAALAKFGLD--TERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGS---AKDHPAGNEIEALLPG-ELR 234 (334)
T ss_pred HHHHHHHcCCC--CCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEC---hhhHHHHHHHHHhCCc-ccc
Confidence 33455666664 34444 456655 446675 45777888777666789999998 5555555555544321 224
Q ss_pred EEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEE
Q 043397 467 RILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVV 512 (596)
Q Consensus 467 ~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~ 512 (596)
.+.|..+=.++..+++.||++|..- .-.+--|.|.|+|+|+
T Consensus 235 ~l~g~~sL~el~ali~~a~l~I~~D-----SGp~HlAaA~~~P~i~ 275 (334)
T TIGR02195 235 NLAGETSLDEAVDLIALAKAVVTND-----SGLMHVAAALNRPLVA 275 (334)
T ss_pred cCCCCCCHHHHHHHHHhCCEEEeeC-----CHHHHHHHHcCCCEEE
Confidence 4678889899999999999999652 2245567899999998
No 158
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=94.98 E-value=0.12 Score=46.79 Aligned_cols=80 Identities=13% Similarity=-0.017 Sum_probs=43.7
Q ss_pred CCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCccc
Q 043397 234 VQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPER 313 (596)
Q Consensus 234 ~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (596)
..+|+|.+.+.. .+..+. . +. ....++|.++..|........+..... ..- +..
T Consensus 58 ~~~dll~aTsml-dLa~l~-g-L~--p~l~~~p~ilYFHENQl~YP~~~~~~r------d~~---------------~~~ 111 (168)
T PF12038_consen 58 HSYDLLFATSML-DLATLR-G-LR--PDLANVPKILYFHENQLAYPVSPGQER------DFQ---------------YGM 111 (168)
T ss_pred cCCCEEEeeccc-cHHHHH-h-hc--cCCCCCCEEEEEecCcccCCCCCCccc------ccc---------------HHH
Confidence 567999998633 111111 0 00 014689999999988754333321110 000 011
Q ss_pred chhhchhccccCeEEEeChhhHHHHhhc
Q 043397 314 LSLLKGGIVYSNAVVTVSPTYLKETLCS 341 (596)
Q Consensus 314 ~~~~~~~~~~ad~vi~vS~~~~~~~~~~ 341 (596)
.++. ...-||.|++.|...++.+++.
T Consensus 112 ~ni~--saLaAD~v~FNS~~nr~sFL~~ 137 (168)
T PF12038_consen 112 NNIY--SALAADRVVFNSAFNRDSFLDG 137 (168)
T ss_pred HHHH--HHHhceeeeecchhhHHHHHHH
Confidence 1111 1223899999999999888743
No 159
>PLN03007 UDP-glucosyltransferase family protein
Probab=94.92 E-value=0.86 Score=49.74 Aligned_cols=136 Identities=13% Similarity=0.090 Sum_probs=76.8
Q ss_pred CCccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEE-EecCCC-----CcchHHHHHHHHHcCCCCcEEEEeccCHHHH
Q 043397 404 GTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMIL-LGNSPV-----HWVQKDFEDLANLHNKGTSTRILLMYSEELS 477 (596)
Q Consensus 404 ~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvI-vG~~~~-----g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l 477 (596)
++..+++..|..... .-+.+.+.+..+...+..|++ ++...+ +...+.+++... ..++++.+++|+.
T Consensus 284 ~~svvyvsfGS~~~~-~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~----~~g~~v~~w~PQ~-- 356 (482)
T PLN03007 284 PDSVIYLSFGSVASF-KNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTK----GKGLIIRGWAPQV-- 356 (482)
T ss_pred CCceEEEeecCCcCC-CHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhc----cCCEEEecCCCHH--
Confidence 345677888887432 223444444444444666554 443110 012223333322 3478999999984
Q ss_pred HHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEE----------eCCC
Q 043397 478 HMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVF----------EGID 543 (596)
Q Consensus 478 ~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv----------~~~d 543 (596)
.+|+.+++.++-+. +--.+++||+.+|+|+|+-...+ ....+.+. .+.|+-+ ..-+
T Consensus 357 -~iL~h~~v~~fvtH--~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~-------~~~G~~~~~~~~~~~~~~~~~ 426 (482)
T PLN03007 357 -LILDHQATGGFVTH--CGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQV-------LRTGVSVGAKKLVKVKGDFIS 426 (482)
T ss_pred -HHhccCccceeeec--CcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHh-------hcceeEeccccccccccCccc
Confidence 57788876443332 33468999999999999954433 22222211 1233332 1136
Q ss_pred HHHHHHHHHHHHH
Q 043397 544 EGSLNWALDRAFR 556 (596)
Q Consensus 544 ~~~la~~i~~ll~ 556 (596)
.+++.+++++++.
T Consensus 427 ~~~l~~av~~~m~ 439 (482)
T PLN03007 427 REKVEKAVREVIV 439 (482)
T ss_pred HHHHHHHHHHHhc
Confidence 8899999999996
No 160
>PLN02562 UDP-glycosyltransferase
Probab=94.90 E-value=0.38 Score=51.87 Aligned_cols=132 Identities=8% Similarity=0.083 Sum_probs=79.8
Q ss_pred CccEEEEEeccc---ccCCHHHHHHHHHHHHHcCCEEEEE-ecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHH
Q 043397 405 TVPLVVCITRLV---AQKGLHLITHAIKRAEELGGQMILL-GNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHML 480 (596)
Q Consensus 405 ~~~~il~iGrl~---~~KGi~~ll~A~~~l~~~~~~lvIv-G~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~ 480 (596)
+..+++..|... +.+-+..+..+++++ +..|+++ .....+...+.+++.. .+|+.+.+++|+.+ +
T Consensus 273 ~svvyvsfGS~~~~~~~~~~~~l~~~l~~~---g~~fiW~~~~~~~~~l~~~~~~~~-----~~~~~v~~w~PQ~~---i 341 (448)
T PLN02562 273 NSVIYISFGSWVSPIGESNVRTLALALEAS---GRPFIWVLNPVWREGLPPGYVERV-----SKQGKVVSWAPQLE---V 341 (448)
T ss_pred CceEEEEecccccCCCHHHHHHHHHHHHHC---CCCEEEEEcCCchhhCCHHHHHHh-----ccCEEEEecCCHHH---H
Confidence 456778888864 333344455555444 5566653 3200112222333322 35678889999854 6
Q ss_pred HHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 481 YAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 481 ~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
++.+++.++-+. +--.+.+||+.+|+|.|+-...+ ....+.+. -+.|+-+...+.++++++|++++.
T Consensus 342 L~h~~v~~fvtH--~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~-------~g~g~~~~~~~~~~l~~~v~~~l~ 412 (448)
T PLN02562 342 LKHQAVGCYLTH--CGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDV-------WKIGVRISGFGQKEVEEGLRKVME 412 (448)
T ss_pred hCCCccceEEec--CcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHH-------hCceeEeCCCCHHHHHHHHHHHhC
Confidence 777775443332 33568999999999999854333 33344331 256776655688999999999996
No 161
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.88 E-value=0.23 Score=49.90 Aligned_cols=98 Identities=17% Similarity=0.105 Sum_probs=69.7
Q ss_pred EEEEEecccccCC--HHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCC
Q 043397 408 LVVCITRLVAQKG--LHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAAD 485 (596)
Q Consensus 408 ~il~iGrl~~~KG--i~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aD 485 (596)
+++..|.-.+.|. .+.+.+.++.+.+.+.+++++|. ....+..+++.+..+....+.+.|..+-.++..+++.||
T Consensus 124 i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~---~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~ 200 (279)
T cd03789 124 VVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGG---PAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARAD 200 (279)
T ss_pred EEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEec---hhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCC
Confidence 4455555455554 57888888888777899999998 555566666665543233356678888899999999999
Q ss_pred EEEEcCCCCCCchHHHHHHhcCCceEEe
Q 043397 486 IVLVPSIYEPCGLAQMIGMRYGAVPVVR 513 (596)
Q Consensus 486 i~l~PS~~E~~gl~~lEAma~G~pvI~s 513 (596)
+++.+- .| .+--|.+.|+|+|+-
T Consensus 201 l~I~~D----sg-~~HlA~a~~~p~i~l 223 (279)
T cd03789 201 LVVTND----SG-PMHLAAALGTPTVAL 223 (279)
T ss_pred EEEeeC----CH-HHHHHHHcCCCEEEE
Confidence 999763 23 344457999999984
No 162
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=94.73 E-value=0.84 Score=49.25 Aligned_cols=135 Identities=12% Similarity=0.079 Sum_probs=77.7
Q ss_pred CCccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCC--CCc-----chHHHHHHHHHcCCCCcEEEEeccCHHH
Q 043397 404 GTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSP--VHW-----VQKDFEDLANLHNKGTSTRILLMYSEEL 476 (596)
Q Consensus 404 ~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~--~g~-----~~~~l~~~~~~~~~~~~V~~~g~~~~~~ 476 (596)
++..+++..|.+..- ..+.+.+.+.-+...+..|+++=... ++. ..+.+++.+ .+|..+.+++++.+
T Consensus 263 ~~sVvyvsfGS~~~~-~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er~-----~~~g~v~~w~PQ~~ 336 (451)
T PLN02410 263 KNSVIFVSLGSLALM-EINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKII-----SGRGYIVKWAPQKE 336 (451)
T ss_pred CCcEEEEEccccccC-CHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHHhc-----cCCeEEEccCCHHH
Confidence 356777888887522 23444444444444344665543311 011 233344333 34667779999855
Q ss_pred HHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEe-CCCHHHHHHHH
Q 043397 477 SHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFE-GIDEGSLNWAL 551 (596)
Q Consensus 477 l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~-~~d~~~la~~i 551 (596)
+++..++..+-+ -+--.+++||+.+|+|.|+-...+ ....+.+. -+.|+-+. .-+.++++++|
T Consensus 337 ---iL~h~~v~~fvt--H~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~-------~~~G~~~~~~~~~~~v~~av 404 (451)
T PLN02410 337 ---VLSHPAVGGFWS--HCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECV-------WKIGIQVEGDLDRGAVERAV 404 (451)
T ss_pred ---HhCCCccCeeee--cCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHH-------hCeeEEeCCcccHHHHHHHH
Confidence 666655533222 233458999999999999954332 33333331 14666652 33788999999
Q ss_pred HHHHH
Q 043397 552 DRAFR 556 (596)
Q Consensus 552 ~~ll~ 556 (596)
++++.
T Consensus 405 ~~lm~ 409 (451)
T PLN02410 405 KRLMV 409 (451)
T ss_pred HHHHc
Confidence 99996
No 163
>PLN02554 UDP-glycosyltransferase family protein
Probab=94.57 E-value=0.84 Score=49.77 Aligned_cols=129 Identities=9% Similarity=0.075 Sum_probs=73.1
Q ss_pred CccEEEEEecccc--cCCHHHHHHHHHHHHHcCCEEEEEecCCC--------Cc-------chHHHHHHHHHcCCCCcEE
Q 043397 405 TVPLVVCITRLVA--QKGLHLITHAIKRAEELGGQMILLGNSPV--------HW-------VQKDFEDLANLHNKGTSTR 467 (596)
Q Consensus 405 ~~~~il~iGrl~~--~KGi~~ll~A~~~l~~~~~~lvIvG~~~~--------g~-------~~~~l~~~~~~~~~~~~V~ 467 (596)
+..+++..|.+.. .+-+..+..+++.+ +.+|+++-.... +. ..+.+++.. .+++.
T Consensus 274 ~svvyvsfGS~~~~~~~~~~~la~~l~~~---~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~-----~~~g~ 345 (481)
T PLN02554 274 KSVVFLCFGSMGGFSEEQAREIAIALERS---GHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRT-----KDIGK 345 (481)
T ss_pred CcEEEEeccccccCCHHHHHHHHHHHHHc---CCCeEEEEcCCcccccccccccccchhhhCChHHHHHh-----ccCce
Confidence 3466778888632 33455555555543 556665432100 00 011222222 34677
Q ss_pred EEeccCHHHHHHHHH--hCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----cc-ccccccCCCCCCCccceEEEe
Q 043397 468 ILLMYSEELSHMLYA--AADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LA-DTVFDVDDPSNHEKANGFVFE 540 (596)
Q Consensus 468 ~~g~~~~~~l~~~~a--~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~-e~i~~~~~~~~~~~~~G~lv~ 540 (596)
+.++.|+.+ +++ ++.+|| + -+--.+++||+.+|+|.|+-...+ -. ..++. -+.|..+.
T Consensus 346 v~~W~PQ~~---iL~H~~v~~Fv--t--H~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~--------~g~Gv~l~ 410 (481)
T PLN02554 346 VIGWAPQVA---VLAKPAIGGFV--T--HCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEE--------LGLAVEIR 410 (481)
T ss_pred EEeeCCHHH---HhCCcccCccc--c--cCccchHHHHHHcCCCEEecCccccchhhHHHHHHH--------hCceEEee
Confidence 779999854 564 444454 2 233458999999999999954433 22 22333 35566553
Q ss_pred -------------CCCHHHHHHHHHHHHH
Q 043397 541 -------------GIDEGSLNWALDRAFR 556 (596)
Q Consensus 541 -------------~~d~~~la~~i~~ll~ 556 (596)
.-+.+++.++|++++.
T Consensus 411 ~~~~~~~~~~~~~~~~~e~l~~av~~vm~ 439 (481)
T PLN02554 411 KYWRGDLLAGEMETVTAEEIERGIRCLME 439 (481)
T ss_pred ccccccccccccCeEcHHHHHHHHHHHhc
Confidence 1267899999999984
No 164
>PLN02555 limonoid glucosyltransferase
Probab=94.51 E-value=1 Score=48.96 Aligned_cols=134 Identities=14% Similarity=0.069 Sum_probs=74.8
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEE-ecCCC------CcchHHHHHHHHHcCCCCcEEEEeccCHHHH
Q 043397 405 TVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILL-GNSPV------HWVQKDFEDLANLHNKGTSTRILLMYSEELS 477 (596)
Q Consensus 405 ~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIv-G~~~~------g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l 477 (596)
...+++..|.+. .-..+.+.+.+..+...+.+|+++ ....+ +...+.+.+ + ..+++.+.++.|+.++
T Consensus 277 ~sVvyvsfGS~~-~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~---~--~~~~g~v~~W~PQ~~i 350 (480)
T PLN02555 277 SSVVYISFGTVV-YLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLE---K--AGDKGKIVQWCPQEKV 350 (480)
T ss_pred CceeEEEecccc-CCCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhh---h--cCCceEEEecCCHHHH
Confidence 346777888764 223334444444444446677765 32000 011122222 1 2356777899998553
Q ss_pred HHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEe-----C--CCHHH
Q 043397 478 HMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFE-----G--IDEGS 546 (596)
Q Consensus 478 ~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~-----~--~d~~~ 546 (596)
... .++.+||. -+--.+.+||+.+|+|.|+-..-+ -...+.+. -+.|+.+. . -+.++
T Consensus 351 L~H-~~v~~Fvt----H~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~-------~gvGv~l~~~~~~~~~v~~~~ 418 (480)
T PLN02555 351 LAH-PSVACFVT----HCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDV-------FKTGVRLCRGEAENKLITREE 418 (480)
T ss_pred hCC-CccCeEEe----cCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHH-------hCceEEccCCccccCcCcHHH
Confidence 222 44555552 234568999999999999954332 33333331 14566652 1 25789
Q ss_pred HHHHHHHHHH
Q 043397 547 LNWALDRAFR 556 (596)
Q Consensus 547 la~~i~~ll~ 556 (596)
+.++|++++.
T Consensus 419 v~~~v~~vm~ 428 (480)
T PLN02555 419 VAECLLEATV 428 (480)
T ss_pred HHHHHHHHhc
Confidence 9999999985
No 165
>PLN02764 glycosyltransferase family protein
Probab=94.36 E-value=1.4 Score=47.54 Aligned_cols=134 Identities=11% Similarity=0.030 Sum_probs=76.9
Q ss_pred CCccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCC------CcchHHHHHHHHHcCCCCcEEEEeccCHHHH
Q 043397 404 GTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPV------HWVQKDFEDLANLHNKGTSTRILLMYSEELS 477 (596)
Q Consensus 404 ~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~------g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l 477 (596)
++..++++.|.+.. -.-+.+.+.+..|...+..|+++=.... +...+.++...+ ...+.+.+++|+.+
T Consensus 256 ~~sVvyvsfGS~~~-~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~----grG~v~~~W~PQ~~- 329 (453)
T PLN02764 256 PDSVVFCALGSQVI-LEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVK----GRGVVWGGWVQQPL- 329 (453)
T ss_pred CCceEEEeeccccc-CCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhc----cCCcEEeCCCCHHH-
Confidence 45567788888733 1234455555444444444433322110 112223333332 23478889999955
Q ss_pred HHHHHhCC--EEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEeC-----CCHHH
Q 043397 478 HMLYAAAD--IVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFEG-----IDEGS 546 (596)
Q Consensus 478 ~~~~a~aD--i~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~~-----~d~~~ 546 (596)
+++... +||. -+-..+.+||+.+|+|.|+-...+ ....+.+ +-+.|+.+.. -+.++
T Consensus 330 --vL~h~~v~~Fvt----H~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~-------~~g~gv~~~~~~~~~~~~e~ 396 (453)
T PLN02764 330 --ILSHPSVGCFVS----HCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSD-------ELKVSVEVAREETGWFSKES 396 (453)
T ss_pred --HhcCcccCeEEe----cCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHH-------HhceEEEeccccCCccCHHH
Confidence 555554 4552 244568999999999999965443 3333322 1355665422 27889
Q ss_pred HHHHHHHHHH
Q 043397 547 LNWALDRAFR 556 (596)
Q Consensus 547 la~~i~~ll~ 556 (596)
+.+++++++.
T Consensus 397 i~~av~~vm~ 406 (453)
T PLN02764 397 LRDAINSVMK 406 (453)
T ss_pred HHHHHHHHhc
Confidence 9999999996
No 166
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=94.29 E-value=3.1 Score=43.33 Aligned_cols=103 Identities=11% Similarity=-0.045 Sum_probs=69.3
Q ss_pred CccEEEEEecccccCC--HHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH
Q 043397 405 TVPLVVCITRLVAQKG--LHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA 482 (596)
Q Consensus 405 ~~~~il~iGrl~~~KG--i~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a 482 (596)
+..+++..|.-.+.|. .+...+.++.+.+.+.+++++|+.. ....+..++.++.......+.+.|..+=.++..+++
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~-e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~ 261 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPD-KDDLACVNEIAQGCQTPPVTALAGKTTFPELGALID 261 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCC-hHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHH
Confidence 4556677777666776 5577777777766688999998611 112233344444332223356779899999999999
Q ss_pred hCCEEEEcCCCCCCchHHHHHHhcCCceEEe
Q 043397 483 AADIVLVPSIYEPCGLAQMIGMRYGAVPVVR 513 (596)
Q Consensus 483 ~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s 513 (596)
.||++|..- .-.+--|.|.|+|+|+-
T Consensus 262 ~a~l~v~nD-----SGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 262 HAQLFIGVD-----SAPAHIAAAVNTPLICL 287 (352)
T ss_pred hCCEEEecC-----CHHHHHHHHcCCCEEEE
Confidence 999999542 22455677999999983
No 167
>PLN02207 UDP-glycosyltransferase
Probab=93.92 E-value=2.1 Score=46.29 Aligned_cols=132 Identities=9% Similarity=-0.018 Sum_probs=72.3
Q ss_pred CccEEEEEecccc--cCCHHHHHHHHHHHHHcCCEEEEEecCCCC----cchHHHHHHHHHcCCCCcEEEEeccCHHHHH
Q 043397 405 TVPLVVCITRLVA--QKGLHLITHAIKRAEELGGQMILLGNSPVH----WVQKDFEDLANLHNKGTSTRILLMYSEELSH 478 (596)
Q Consensus 405 ~~~~il~iGrl~~--~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g----~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~ 478 (596)
+..+++..|.... .+-+..+..+++. .+..|+++=..... ...+.+++.. .++..+.++.|+.+
T Consensus 275 ~sVVyvSfGS~~~~~~~q~~ela~~l~~---~~~~flW~~r~~~~~~~~~lp~~f~er~-----~~~g~i~~W~PQ~~-- 344 (468)
T PLN02207 275 ASVVFLCFGSMGRLRGPLVKEIAHGLEL---CQYRFLWSLRTEEVTNDDLLPEGFLDRV-----SGRGMICGWSPQVE-- 344 (468)
T ss_pred CcEEEEEeccCcCCCHHHHHHHHHHHHH---CCCcEEEEEeCCCccccccCCHHHHhhc-----CCCeEEEEeCCHHH--
Confidence 4567788887642 2224444444443 35566554320001 1112333222 34566779999955
Q ss_pred HHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEe---------CCCHH
Q 043397 479 MLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFE---------GIDEG 545 (596)
Q Consensus 479 ~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~---------~~d~~ 545 (596)
+++...+..+-+. +--.+.+||+.+|+|+|+-...+ -...+.+. .+.|+-+. .-+.+
T Consensus 345 -IL~H~~vg~FvTH--~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~-------~gvGv~~~~~~~~~~~~~v~~e 414 (468)
T PLN02207 345 -ILAHKAVGGFVSH--CGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKE-------LKLAVELKLDYRVHSDEIVNAN 414 (468)
T ss_pred -Hhcccccceeeec--CccccHHHHHHcCCCEEecCccccchhhHHHHHHH-------hCceEEEecccccccCCcccHH
Confidence 5555555433332 23347899999999999954433 22322221 24555331 12678
Q ss_pred HHHHHHHHHHH
Q 043397 546 SLNWALDRAFR 556 (596)
Q Consensus 546 ~la~~i~~ll~ 556 (596)
++.++|++++.
T Consensus 415 ~i~~av~~vm~ 425 (468)
T PLN02207 415 EIETAIRCVMN 425 (468)
T ss_pred HHHHHHHHHHh
Confidence 99999999995
No 168
>PLN02167 UDP-glycosyltransferase family protein
Probab=93.87 E-value=2 Score=46.85 Aligned_cols=129 Identities=11% Similarity=0.055 Sum_probs=73.0
Q ss_pred CccEEEEEecccc--cCCHHHHHHHHHHHHHcCCEEEEE-ecCCCC------cchHHHHHHHHHcCCCCcEEEEeccCHH
Q 043397 405 TVPLVVCITRLVA--QKGLHLITHAIKRAEELGGQMILL-GNSPVH------WVQKDFEDLANLHNKGTSTRILLMYSEE 475 (596)
Q Consensus 405 ~~~~il~iGrl~~--~KGi~~ll~A~~~l~~~~~~lvIv-G~~~~g------~~~~~l~~~~~~~~~~~~V~~~g~~~~~ 475 (596)
+.++++..|.+.. .+-+..+..+++. .+.+|+++ +...++ ...+.+++.+ .++..+.++.++.
T Consensus 280 ~svvyvsfGS~~~~~~~~~~ela~~l~~---~~~~flw~~~~~~~~~~~~~~~lp~~~~er~-----~~rg~v~~w~PQ~ 351 (475)
T PLN02167 280 SSVVFLCFGSLGSLPAPQIKEIAQALEL---VGCRFLWSIRTNPAEYASPYEPLPEGFMDRV-----MGRGLVCGWAPQV 351 (475)
T ss_pred CceEEEeecccccCCHHHHHHHHHHHHh---CCCcEEEEEecCcccccchhhhCChHHHHHh-----ccCeeeeccCCHH
Confidence 4567778887632 2334444444444 36676644 421111 1122233222 2345667999885
Q ss_pred HHHHHHHhCC--EEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----cccc-ccccCCCCCCCccceEEEeC-------
Q 043397 476 LSHMLYAAAD--IVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADT-VFDVDDPSNHEKANGFVFEG------- 541 (596)
Q Consensus 476 ~l~~~~a~aD--i~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~-i~~~~~~~~~~~~~G~lv~~------- 541 (596)
+ +++... +||. -+--.+.+||+++|+|.|+-...+ .... ++. -+.|+.+..
T Consensus 352 ~---iL~h~~vg~fvt----H~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~--------~g~g~~~~~~~~~~~~ 416 (475)
T PLN02167 352 E---ILAHKAIGGFVS----HCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKE--------LGLAVELRLDYVSAYG 416 (475)
T ss_pred H---HhcCcccCeEEe----eCCcccHHHHHHcCCCEEeccccccchhhHHHHHHH--------hCeeEEeecccccccC
Confidence 4 566644 4552 233358899999999999954333 2212 333 356766532
Q ss_pred --CCHHHHHHHHHHHHH
Q 043397 542 --IDEGSLNWALDRAFR 556 (596)
Q Consensus 542 --~d~~~la~~i~~ll~ 556 (596)
-+.++++++|++++.
T Consensus 417 ~~~~~~~l~~av~~~m~ 433 (475)
T PLN02167 417 EIVKADEIAGAVRSLMD 433 (475)
T ss_pred CcccHHHHHHHHHHHhc
Confidence 267899999999986
No 169
>PLN02208 glycosyltransferase family protein
Probab=93.42 E-value=4.8 Score=43.37 Aligned_cols=136 Identities=10% Similarity=-0.013 Sum_probs=79.1
Q ss_pred CCccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCC-C-----CcchHHHHHHHHHcCCCCcEEEEeccCHHHH
Q 043397 404 GTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSP-V-----HWVQKDFEDLANLHNKGTSTRILLMYSEELS 477 (596)
Q Consensus 404 ~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~-~-----g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l 477 (596)
++..++++.|.+.. -..+.+.+.+..+...+..++++=... + +...+.+++..+ ..++.+.++.|+.+
T Consensus 250 ~~sVvyvSfGS~~~-l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r~~----~~g~~v~~W~PQ~~- 323 (442)
T PLN02208 250 PKSVVFCSLGSQII-LEKDQFQELCLGMELTGLPFLIAVKPPRGSSTVQEGLPEGFEERVK----GRGVVWGGWVQQPL- 323 (442)
T ss_pred CCcEEEEecccccc-CCHHHHHHHHHHHHhCCCcEEEEEeCCCcccchhhhCCHHHHHHHh----cCCcEeeccCCHHH-
Confidence 34677788888752 234455555544423333333332211 0 112233444332 34688889999944
Q ss_pred HHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEeC-----CCHHHHH
Q 043397 478 HMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFEG-----IDEGSLN 548 (596)
Q Consensus 478 ~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~~-----~d~~~la 548 (596)
+++...+.++-+. +--.+++||+++|+|+|+-..-+ ....+.+ +-+.|+.+.. -+.+++.
T Consensus 324 --iL~H~~v~~FvtH--cG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~-------~~g~gv~~~~~~~~~~~~~~l~ 392 (442)
T PLN02208 324 --ILDHPSIGCFVNH--CGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTE-------EFEVSVEVSREKTGWFSKESLS 392 (442)
T ss_pred --HhcCCccCeEEcc--CCchHHHHHHHcCCCEEecCcchhhHHHHHHHHH-------HhceeEEeccccCCcCcHHHHH
Confidence 6777776554443 23468999999999999954333 2222222 1255666642 3678999
Q ss_pred HHHHHHHH
Q 043397 549 WALDRAFR 556 (596)
Q Consensus 549 ~~i~~ll~ 556 (596)
++|+++++
T Consensus 393 ~ai~~~m~ 400 (442)
T PLN02208 393 NAIKSVMD 400 (442)
T ss_pred HHHHHHhc
Confidence 99999996
No 170
>PLN02210 UDP-glucosyl transferase
Probab=93.39 E-value=2.3 Score=46.03 Aligned_cols=135 Identities=8% Similarity=0.027 Sum_probs=78.5
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEE-EecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh
Q 043397 405 TVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMIL-LGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA 483 (596)
Q Consensus 405 ~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvI-vG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~ 483 (596)
...+++..|.+... .-+.+-+.+.-+...+.+|++ ++....+...+.+++..+ .++..+.++.++.+ +++.
T Consensus 269 ~svvyvsfGS~~~~-~~~~~~e~a~~l~~~~~~flw~~~~~~~~~~~~~~~~~~~----~~~g~v~~w~PQ~~---iL~h 340 (456)
T PLN02210 269 SSVVYISFGSMLES-LENQVETIAKALKNRGVPFLWVIRPKEKAQNVQVLQEMVK----EGQGVVLEWSPQEK---ILSH 340 (456)
T ss_pred CceEEEEecccccC-CHHHHHHHHHHHHhCCCCEEEEEeCCccccchhhHHhhcc----CCCeEEEecCCHHH---HhcC
Confidence 45677888887432 334555555555555677765 443111112223333221 13445669999854 6777
Q ss_pred CCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEeC------CCHHHHHHHHHH
Q 043397 484 ADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFEG------IDEGSLNWALDR 553 (596)
Q Consensus 484 aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~~------~d~~~la~~i~~ 553 (596)
+.+..+-+. +--.+++||+.+|+|.|+-...+ ....+.+. -+.|+.+.. -+.+++.+++++
T Consensus 341 ~~vg~FitH--~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~-------~g~G~~l~~~~~~~~~~~~~l~~av~~ 411 (456)
T PLN02210 341 MAISCFVTH--CGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDV-------FGIGVRMRNDAVDGELKVEEVERCIEA 411 (456)
T ss_pred cCcCeEEee--CCcccHHHHHHcCCCEEecccccccHHHHHHHHHH-------hCeEEEEeccccCCcCCHHHHHHHHHH
Confidence 774443322 22348899999999999954433 22333321 256766642 367899999999
Q ss_pred HHH
Q 043397 554 AFR 556 (596)
Q Consensus 554 ll~ 556 (596)
++.
T Consensus 412 ~m~ 414 (456)
T PLN02210 412 VTE 414 (456)
T ss_pred Hhc
Confidence 996
No 171
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.27 E-value=0.19 Score=41.70 Aligned_cols=81 Identities=11% Similarity=0.117 Sum_probs=58.7
Q ss_pred EEEEecCCCCcchHHHHHHHHHcCCCCcEEEE---eccCHHH--HHHHHHhCCEEEEcCCC---CCCchHHHHHHhcCCc
Q 043397 438 MILLGNSPVHWVQKDFEDLANLHNKGTSTRIL---LMYSEEL--SHMLYAAADIVLVPSIY---EPCGLAQMIGMRYGAV 509 (596)
Q Consensus 438 lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~---g~~~~~~--l~~~~a~aDi~l~PS~~---E~~gl~~lEAma~G~p 509 (596)
++|+|+. ......+++..+++|.. +.++ +...... ++..+..||++|++..+ ..+-.+--+|-..|+|
T Consensus 2 vliVGG~--~~~~~~~~~~~~~~G~~--~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip 77 (97)
T PF10087_consen 2 VLIVGGR--EDRERRYKRILEKYGGK--LIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIP 77 (97)
T ss_pred EEEEcCC--cccHHHHHHHHHHcCCE--EEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCc
Confidence 4666641 36778889999988763 5555 4444444 89999999999998865 4455566788899999
Q ss_pred eEEeCCCCccccc
Q 043397 510 PVVRKTGGLADTV 522 (596)
Q Consensus 510 vI~s~~gg~~e~i 522 (596)
++-+...|+..+.
T Consensus 78 ~~~~~~~~~~~l~ 90 (97)
T PF10087_consen 78 IIYSRSRGVSSLE 90 (97)
T ss_pred EEEECCCCHHHHH
Confidence 9998877765544
No 172
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=92.80 E-value=2.2 Score=44.34 Aligned_cols=109 Identities=13% Similarity=0.065 Sum_probs=71.3
Q ss_pred HHhhcCCCCCCCcc-EEEEEecc-cccCC--HHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCC--Cc-E
Q 043397 394 IQKGLGLKSEGTVP-LVVCITRL-VAQKG--LHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKG--TS-T 466 (596)
Q Consensus 394 ~~~~l~l~~~~~~~-~il~iGrl-~~~KG--i~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~--~~-V 466 (596)
+.+.+++. .+++ +++..|.- .+.|. .+.+.+.++.+.+.+.++++.|+ ..+.+..++..+..+.. ++ +
T Consensus 170 ~~~~~~~~--~~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg---~~e~~~~~~i~~~~~~~~~~~~~ 244 (348)
T PRK10916 170 TCAAFSLS--SERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGS---AKDHEAGNEILAALNTEQQAWCR 244 (348)
T ss_pred HHHHcCCC--CCCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeC---HHhHHHHHHHHHhccccccccee
Confidence 34444442 3444 44566653 46665 45667777777666789999998 55555555555543321 12 4
Q ss_pred EEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEE
Q 043397 467 RILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVV 512 (596)
Q Consensus 467 ~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~ 512 (596)
.+.|..+=.++..+++.||++|..- .-.+--|.|.|+|+|+
T Consensus 245 ~l~g~~sL~el~ali~~a~l~I~nD-----TGp~HlAaA~g~P~va 285 (348)
T PRK10916 245 NLAGETQLEQAVILIAACKAIVTND-----SGLMHVAAALNRPLVA 285 (348)
T ss_pred eccCCCCHHHHHHHHHhCCEEEecC-----ChHHHHHHHhCCCEEE
Confidence 5668888888999999999999552 2245567899999998
No 173
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=92.77 E-value=2.9 Score=42.80 Aligned_cols=99 Identities=15% Similarity=-0.009 Sum_probs=67.2
Q ss_pred CccEEEEEecccccCCH--HHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH
Q 043397 405 TVPLVVCITRLVAQKGL--HLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA 482 (596)
Q Consensus 405 ~~~~il~iGrl~~~KGi--~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a 482 (596)
+..++++.|.=.+.|.. +...+.++.+.+.+.++++.|+. ..+.+..+++.+..+ +..+.|..+-.++..+++
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~--~~e~~~~~~i~~~~~---~~~l~g~~sL~el~ali~ 253 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGN--DAEKQRAERIAEALP---GAVVLPKMSLAEVAALLA 253 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCC--HHHHHHHHHHHhhCC---CCeecCCCCHHHHHHHHH
Confidence 34456677755567764 57777777776667888887540 233344555554433 345678889889999999
Q ss_pred hCCEEEEcCCCCCCchHHHHHHhcCCceEEe
Q 043397 483 AADIVLVPSIYEPCGLAQMIGMRYGAVPVVR 513 (596)
Q Consensus 483 ~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s 513 (596)
.||++|..- .-.+-=|-|.|+|+|+-
T Consensus 254 ~a~l~I~~D-----Sgp~HlAaa~g~P~i~l 279 (319)
T TIGR02193 254 GADAVVGVD-----TGLTHLAAALDKPTVTL 279 (319)
T ss_pred cCCEEEeCC-----ChHHHHHHHcCCCEEEE
Confidence 999999652 22455677889999984
No 174
>PLN00164 glucosyltransferase; Provisional
Probab=92.73 E-value=2.8 Score=45.66 Aligned_cols=80 Identities=8% Similarity=-0.084 Sum_probs=52.9
Q ss_pred cEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEe
Q 043397 465 STRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFE 540 (596)
Q Consensus 465 ~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~ 540 (596)
.+.+.++.++. .+++.+++..+-+. +--.+.+||+.+|+|.|+-..-+ -...+.+ +-+.|+.+.
T Consensus 340 g~~v~~w~PQ~---~iL~h~~vg~fvtH--~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~-------~~gvG~~~~ 407 (480)
T PLN00164 340 GLVWPTWAPQK---EILAHAAVGGFVTH--CGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVA-------DMGVAVAMK 407 (480)
T ss_pred CeEEeecCCHH---HHhcCcccCeEEee--cccchHHHHHHcCCCEEeCCccccchhHHHHHHH-------HhCeEEEec
Confidence 47777999984 46777776444332 23458999999999999943332 2222322 135676663
Q ss_pred C-------CCHHHHHHHHHHHHH
Q 043397 541 G-------IDEGSLNWALDRAFR 556 (596)
Q Consensus 541 ~-------~d~~~la~~i~~ll~ 556 (596)
. -+.+++.++|++++.
T Consensus 408 ~~~~~~~~~~~e~l~~av~~vm~ 430 (480)
T PLN00164 408 VDRKRDNFVEAAELERAVRSLMG 430 (480)
T ss_pred cccccCCcCcHHHHHHHHHHHhc
Confidence 1 257899999999996
No 175
>PLN02173 UDP-glucosyl transferase family protein
Probab=92.24 E-value=3.6 Score=44.36 Aligned_cols=134 Identities=8% Similarity=0.031 Sum_probs=76.5
Q ss_pred CCccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCC-CCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH
Q 043397 404 GTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSP-VHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA 482 (596)
Q Consensus 404 ~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~-~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a 482 (596)
+...+++..|.... -..+.+.+.+.-+ .+..|+++=... +....+.+.+... .+++.+.++.++. ++++
T Consensus 263 ~~svvyvsfGS~~~-~~~~~~~ela~gL--s~~~flWvvr~~~~~~lp~~~~~~~~----~~~~~i~~W~PQ~---~iL~ 332 (449)
T PLN02173 263 QGSVVYIAFGSMAK-LSSEQMEEIASAI--SNFSYLWVVRASEESKLPPGFLETVD----KDKSLVLKWSPQL---QVLS 332 (449)
T ss_pred CCceEEEEeccccc-CCHHHHHHHHHHh--cCCCEEEEEeccchhcccchHHHhhc----CCceEEeCCCCHH---HHhC
Confidence 34467788887642 2334444444444 233444332200 0111222322221 3468888999984 4677
Q ss_pred hCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEeC------CCHHHHHHHHH
Q 043397 483 AADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFEG------IDEGSLNWALD 552 (596)
Q Consensus 483 ~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~~------~d~~~la~~i~ 552 (596)
..++.++-+. +-..+++||+++|+|.|+-..-+ ....+.+. -+.|+-+.. -+.+++.++++
T Consensus 333 H~~v~~FvtH--cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~-------~g~Gv~v~~~~~~~~~~~e~v~~av~ 403 (449)
T PLN02173 333 NKAIGCFMTH--CGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDV-------WKVGVRVKAEKESGIAKREEIEFSIK 403 (449)
T ss_pred CCccceEEec--CccchHHHHHHcCCCEEecCchhcchHHHHHHHHH-------hCceEEEeecccCCcccHHHHHHHHH
Confidence 7775554433 34578999999999999954333 33344331 145665532 15799999999
Q ss_pred HHHH
Q 043397 553 RAFR 556 (596)
Q Consensus 553 ~ll~ 556 (596)
+++.
T Consensus 404 ~vm~ 407 (449)
T PLN02173 404 EVME 407 (449)
T ss_pred HHhc
Confidence 9996
No 176
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=92.05 E-value=3.7 Score=44.62 Aligned_cols=80 Identities=5% Similarity=-0.100 Sum_probs=55.1
Q ss_pred CcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----cccccc-ccCCCCCCCccceEE
Q 043397 464 TSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVF-DVDDPSNHEKANGFV 538 (596)
Q Consensus 464 ~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~-~~~~~~~~~~~~G~l 538 (596)
.++++.+++++.+ +++...+..+-+ -+-..+.+||+.+|+|+|+-...+ ....+. . .+.|..
T Consensus 338 rg~vv~~W~PQ~~---iL~h~~vg~Fit--H~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~--------~g~gv~ 404 (481)
T PLN02992 338 RGFVVPSWAPQAE---ILAHQAVGGFLT--HCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDE--------LGIAVR 404 (481)
T ss_pred CCEEEeecCCHHH---HhCCcccCeeEe--cCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHH--------hCeeEE
Confidence 4688899999844 677777643332 234468999999999999954443 333442 3 356766
Q ss_pred EeC----CCHHHHHHHHHHHHH
Q 043397 539 FEG----IDEGSLNWALDRAFR 556 (596)
Q Consensus 539 v~~----~d~~~la~~i~~ll~ 556 (596)
++. -+.+++.++|.+++.
T Consensus 405 ~~~~~~~~~~~~l~~av~~vm~ 426 (481)
T PLN02992 405 SDDPKEVISRSKIEALVRKVMV 426 (481)
T ss_pred ecCCCCcccHHHHHHHHHHHhc
Confidence 643 367899999999986
No 177
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=92.02 E-value=1.1 Score=49.22 Aligned_cols=129 Identities=16% Similarity=0.063 Sum_probs=74.3
Q ss_pred CCccEEEEEecccccCCHH----HHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHH
Q 043397 404 GTVPLVVCITRLVAQKGLH----LITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHM 479 (596)
Q Consensus 404 ~~~~~il~iGrl~~~KGi~----~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~ 479 (596)
.+..+++..|.+.. .-.+ .++++++++ +.++++.-+ +.....+ .+|+.+..++|+. +
T Consensus 275 ~~~vv~vsfGs~~~-~~~~~~~~~~~~~~~~~---~~~~iW~~~---~~~~~~l---------~~n~~~~~W~PQ~---~ 335 (500)
T PF00201_consen 275 KKGVVYVSFGSIVS-SMPEEKLKEIAEAFENL---PQRFIWKYE---GEPPENL---------PKNVLIVKWLPQN---D 335 (500)
T ss_dssp TTEEEEEE-TSSST-T-HHHHHHHHHHHHHCS---TTEEEEEET---CSHGCHH---------HTTEEEESS--HH---H
T ss_pred CCCEEEEecCcccc-hhHHHHHHHHHHHHhhC---CCccccccc---ccccccc---------cceEEEeccccch---h
Confidence 34567788888753 2233 344444433 347777665 4222111 2478899999984 4
Q ss_pred HHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEeCC--CHHHHHHHHHH
Q 043397 480 LYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFEGI--DEGSLNWALDR 553 (596)
Q Consensus 480 ~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~~~--d~~~la~~i~~ 553 (596)
+++...+-++=+ -+.-.+++||+.+|+|+|+-..-| ....+++ .+.|...+.. +.+++.++|++
T Consensus 336 lL~hp~v~~fit--HgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~--------~G~g~~l~~~~~~~~~l~~ai~~ 405 (500)
T PF00201_consen 336 LLAHPRVKLFIT--HGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEE--------KGVGVVLDKNDLTEEELRAAIRE 405 (500)
T ss_dssp HHTSTTEEEEEE--S--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHH--------TTSEEEEGGGC-SHHHHHHHHHH
T ss_pred hhhcccceeeee--ccccchhhhhhhccCCccCCCCcccCCccceEEEE--------EeeEEEEEecCCcHHHHHHHHHH
Confidence 576655433322 244568999999999999954333 3344444 4667777644 57889999999
Q ss_pred HHHhccCCHHHH
Q 043397 554 AFRHFIDKPEEW 565 (596)
Q Consensus 554 ll~~~~~~~~~~ 565 (596)
+++ |+...
T Consensus 406 vl~----~~~y~ 413 (500)
T PF00201_consen 406 VLE----NPSYK 413 (500)
T ss_dssp HHH----SHHHH
T ss_pred HHh----hhHHH
Confidence 998 76543
No 178
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=91.97 E-value=1.2 Score=43.68 Aligned_cols=101 Identities=16% Similarity=0.056 Sum_probs=63.5
Q ss_pred CCccEEEEEecccccCC--HHHHHHHHHHHHHcCCEEEEEecCCCCcc--hHHHHHHHHHcCCCCcEEEEeccCHHHHHH
Q 043397 404 GTVPLVVCITRLVAQKG--LHLITHAIKRAEELGGQMILLGNSPVHWV--QKDFEDLANLHNKGTSTRILLMYSEELSHM 479 (596)
Q Consensus 404 ~~~~~il~iGrl~~~KG--i~~ll~A~~~l~~~~~~lvIvG~~~~g~~--~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~ 479 (596)
.+..+++..|.-.+.|. .+...+.++.+.+.+.+++++|. +.. .+..+...+... .+.+.+.|..+-.++..
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~e~~a 179 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGG---PEEQEKEIADQIAAGLQ-NPVINLAGKTSLRELAA 179 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--S---SHHHHHHHHHHHHTTHT-TTTEEETTTS-HHHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEcc---chHHHHHHHHHHHHhcc-cceEeecCCCCHHHHHH
Confidence 44556677777667776 44477888888666678999998 444 233334443322 12577889999999999
Q ss_pred HHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEe
Q 043397 480 LYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVR 513 (596)
Q Consensus 480 ~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s 513 (596)
+++.||++|.+- +-.+--|.|.|+|+|+-
T Consensus 180 li~~a~~~I~~D-----tg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 180 LISRADLVIGND-----TGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHTSSEEEEES-----SHHHHHHHHTT--EEEE
T ss_pred HHhcCCEEEecC-----ChHHHHHHHHhCCEEEE
Confidence 999999999762 33556788999999994
No 179
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=91.90 E-value=3.4 Score=42.39 Aligned_cols=96 Identities=16% Similarity=-0.018 Sum_probs=65.4
Q ss_pred cEEEEEecccccCC--HHHHHHHHHHHHHcCCEEEEE-ecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh
Q 043397 407 PLVVCITRLVAQKG--LHLITHAIKRAEELGGQMILL-GNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA 483 (596)
Q Consensus 407 ~~il~iGrl~~~KG--i~~ll~A~~~l~~~~~~lvIv-G~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~ 483 (596)
.+++..|.-.+.|. .+...+.+..+.+.+.++++. |. +.+.+..+++.+. .+++.+.|..+=.++..+++.
T Consensus 180 ~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~---~~e~~~~~~i~~~---~~~~~l~g~~sL~elaali~~ 253 (322)
T PRK10964 180 YLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGA---EHEEQRAKRLAEG---FPYVEVLPKLSLEQVARVLAG 253 (322)
T ss_pred eEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCC---HHHHHHHHHHHcc---CCcceecCCCCHHHHHHHHHh
Confidence 33344454344554 456777777776667888886 55 3444444555443 235777798999999999999
Q ss_pred CCEEEEcCCCCCCchHHHHHHhcCCceEEe
Q 043397 484 ADIVLVPSIYEPCGLAQMIGMRYGAVPVVR 513 (596)
Q Consensus 484 aDi~l~PS~~E~~gl~~lEAma~G~pvI~s 513 (596)
||++|.. =.-.+-=|-|+|+|+|+-
T Consensus 254 a~l~I~n-----DSGp~HlA~A~g~p~val 278 (322)
T PRK10964 254 AKAVVSV-----DTGLSHLTAALDRPNITL 278 (322)
T ss_pred CCEEEec-----CCcHHHHHHHhCCCEEEE
Confidence 9999965 233556688999999993
No 180
>PLN00414 glycosyltransferase family protein
Probab=91.82 E-value=3.5 Score=44.45 Aligned_cols=134 Identities=8% Similarity=-0.026 Sum_probs=79.5
Q ss_pred CCccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCC------CCcchHHHHHHHHHcCCCCcEEEEeccCHHHH
Q 043397 404 GTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSP------VHWVQKDFEDLANLHNKGTSTRILLMYSEELS 477 (596)
Q Consensus 404 ~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~------~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l 477 (596)
+...+.+..|.+.... -+.+.+.+.-|...+..|+.+=... .+...+.+++..+ ...+++.+++|+.+
T Consensus 251 ~~sVvyvsfGS~~~~~-~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~----~~g~vv~~w~PQ~~- 324 (446)
T PLN00414 251 PGSVVFCAFGTQFFFE-KDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVK----GRGIVWEGWVEQPL- 324 (446)
T ss_pred CCceEEEeecccccCC-HHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhc----CCCeEEeccCCHHH-
Confidence 4566778888874332 2455555554544455553322110 1123344555443 23477789999955
Q ss_pred HHHHHhCC--EEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEeC-----CCHHH
Q 043397 478 HMLYAAAD--IVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFEG-----IDEGS 546 (596)
Q Consensus 478 ~~~~a~aD--i~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~~-----~d~~~ 546 (596)
+++.+. +||. -+--.+.+||+.+|+|.|+-...+ ....+.+ +.+.|+.+.. -+.++
T Consensus 325 --vL~h~~v~~fvt----H~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~-------~~g~g~~~~~~~~~~~~~~~ 391 (446)
T PLN00414 325 --ILSHPSVGCFVN----HCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTE-------ELEVSVKVQREDSGWFSKES 391 (446)
T ss_pred --HhcCCccceEEe----cCchhHHHHHHHcCCCEEecCcccchHHHHHHHHH-------HhCeEEEeccccCCccCHHH
Confidence 566664 4552 234568999999999999954433 3333422 1356666632 37889
Q ss_pred HHHHHHHHHH
Q 043397 547 LNWALDRAFR 556 (596)
Q Consensus 547 la~~i~~ll~ 556 (596)
+.+++++++.
T Consensus 392 i~~~v~~~m~ 401 (446)
T PLN00414 392 LRDTVKSVMD 401 (446)
T ss_pred HHHHHHHHhc
Confidence 9999999996
No 181
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=91.76 E-value=2.6 Score=43.64 Aligned_cols=100 Identities=12% Similarity=-0.012 Sum_probs=67.7
Q ss_pred ccEEEEEecccccCC--HHHHHHHHHHHHHcCCEEEEEecCCCCc--chHHHHHHHHHcCCCCcEEEEeccCHHHHHHHH
Q 043397 406 VPLVVCITRLVAQKG--LHLITHAIKRAEELGGQMILLGNSPVHW--VQKDFEDLANLHNKGTSTRILLMYSEELSHMLY 481 (596)
Q Consensus 406 ~~~il~iGrl~~~KG--i~~ll~A~~~l~~~~~~lvIvG~~~~g~--~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~ 481 (596)
..+++..|.-.+.|. .+...+.++.+.+.+.+++++|+ +. ..+..++..+..+...-+.+.|..+=.++..++
T Consensus 182 ~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~---p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali 258 (344)
T TIGR02201 182 NYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSG---PDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALI 258 (344)
T ss_pred CEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecC---CCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHH
Confidence 445566666556664 56777777777666789999986 32 222344444433322235577989999999999
Q ss_pred HhCCEEEEcCCCCCCchHHHHHHhcCCceEEe
Q 043397 482 AAADIVLVPSIYEPCGLAQMIGMRYGAVPVVR 513 (596)
Q Consensus 482 a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s 513 (596)
+.||++|.. + +..+-=|.|.|+|+|+-
T Consensus 259 ~~a~l~Vs~---D--SGp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 259 DHARLFIGV---D--SVPMHMAAALGTPLVAL 285 (344)
T ss_pred HhCCEEEec---C--CHHHHHHHHcCCCEEEE
Confidence 999999965 2 23456678999999983
No 182
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=91.45 E-value=17 Score=36.67 Aligned_cols=87 Identities=17% Similarity=0.069 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHHc-CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCch
Q 043397 420 GLHLITHAIKRAEEL-GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGL 498 (596)
Q Consensus 420 Gi~~ll~A~~~l~~~-~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl 498 (596)
.++.+.+++..+.+. +.+++++.... ....+..+++.+.+.....+ +...+.+++..++++||++|-...+
T Consensus 189 ~~~~l~~~l~~l~~~~g~~v~~i~~~~-~~D~~~~~~l~~~~~~~~~i--~~~~~~~e~~~~i~~~~~vI~~RlH----- 260 (298)
T TIGR03609 189 RLLRLLRALDRLQRDTGAFVLFLPFQQ-PQDLPLARALRDQLLGPAEV--LSPLDPEELLGLFASARLVIGMRLH----- 260 (298)
T ss_pred HHHHHHHHHHHHHHhhCCeEEEEeCCc-chhHHHHHHHHHhcCCCcEE--EecCCHHHHHHHHhhCCEEEEechH-----
Confidence 356677777777553 77776665411 22334445555555433333 3667888899999999988865554
Q ss_pred HHHHHHhcCCceEEeC
Q 043397 499 AQMIGMRYGAVPVVRK 514 (596)
Q Consensus 499 ~~lEAma~G~pvI~s~ 514 (596)
..+=|+.+|+|+|+-.
T Consensus 261 ~~I~A~~~gvP~i~i~ 276 (298)
T TIGR03609 261 ALILAAAAGVPFVALS 276 (298)
T ss_pred HHHHHHHcCCCEEEee
Confidence 5678899999999853
No 183
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=90.02 E-value=3.5 Score=41.12 Aligned_cols=99 Identities=10% Similarity=0.005 Sum_probs=60.1
Q ss_pred CCccEEEEEeccccc-------CCHHHHHHHHHHHHH--cCCEEEEEecCC--CCcchHHHHHHHHHcCCCCcEEEE-ec
Q 043397 404 GTVPLVVCITRLVAQ-------KGLHLITHAIKRAEE--LGGQMILLGNSP--VHWVQKDFEDLANLHNKGTSTRIL-LM 471 (596)
Q Consensus 404 ~~~~~il~iGrl~~~-------KGi~~ll~A~~~l~~--~~~~lvIvG~~~--~g~~~~~l~~~~~~~~~~~~V~~~-g~ 471 (596)
.+++.|++....... .....+++.+..+.+ ++.+++|==.+. .+.....+.+. .+ ..++.+. ..
T Consensus 115 ~~~~~vlv~lQ~~~D~~i~~~~~~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~---~~-~~~~~~~~~~ 190 (269)
T PF05159_consen 115 KNKKYVLVPLQVENDSQIRYHSPSQADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEEL---PN-LPNVVIIDDD 190 (269)
T ss_pred CCCCEEEEEeeCCcCcchhccCCcHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhh---hc-CCCeEEECCC
Confidence 566777777766443 244556666666554 467877655410 01111222222 12 3344444 33
Q ss_pred cCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeC
Q 043397 472 YSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRK 514 (596)
Q Consensus 472 ~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~ 514 (596)
.+ +.+++..||.++.- .+.+.+||+.+|+||++..
T Consensus 191 ~~---~~~Ll~~s~~Vvti-----nStvGlEAll~gkpVi~~G 225 (269)
T PF05159_consen 191 VN---LYELLEQSDAVVTI-----NSTVGLEALLHGKPVIVFG 225 (269)
T ss_pred CC---HHHHHHhCCEEEEE-----CCHHHHHHHHcCCceEEec
Confidence 43 57889999998854 4778999999999999943
No 184
>PLN02534 UDP-glycosyltransferase
Probab=89.87 E-value=11 Score=41.27 Aligned_cols=135 Identities=13% Similarity=0.055 Sum_probs=73.5
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCC-CCc------chHHHHHHHHHcCCCCcEEEEeccCHHHH
Q 043397 405 TVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSP-VHW------VQKDFEDLANLHNKGTSTRILLMYSEELS 477 (596)
Q Consensus 405 ~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~-~g~------~~~~l~~~~~~~~~~~~V~~~g~~~~~~l 477 (596)
...+++..|.+.. -.-+.+.+.+.-+...+..|+.+=... ... ..+.+.+..+ ..++++.+++++.+
T Consensus 283 ~sVvyvsfGS~~~-~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~----~~g~~v~~w~pq~~- 356 (491)
T PLN02534 283 RSVIYACLGSLCR-LVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEERIK----GRGLLIKGWAPQVL- 356 (491)
T ss_pred CceEEEEeccccc-CCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHhhc----cCCeeccCCCCHHH-
Confidence 4567778887642 223334444433333344555443311 001 1122222221 34688889999844
Q ss_pred HHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEe-------------
Q 043397 478 HMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFE------------- 540 (596)
Q Consensus 478 ~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~------------- 540 (596)
+++..++..+-+ -+-..+++||+.+|+|.|+-...+ ....+.+. -+.|+-+.
T Consensus 357 --iL~h~~v~~fvt--H~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~-------~~vGv~~~~~~~~~~~~~~~~ 425 (491)
T PLN02534 357 --ILSHPAIGGFLT--HCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEV-------LRIGVRVGVEVPVRWGDEERV 425 (491)
T ss_pred --HhcCCccceEEe--cCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHh-------hcceEEecccccccccccccc
Confidence 677777744332 244568999999999999955433 21222221 12333221
Q ss_pred --CCCHHHHHHHHHHHHH
Q 043397 541 --GIDEGSLNWALDRAFR 556 (596)
Q Consensus 541 --~~d~~~la~~i~~ll~ 556 (596)
.-+.+++++++++++.
T Consensus 426 ~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 426 GVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred cCccCHHHHHHHHHHHhc
Confidence 0257899999999984
No 185
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=89.60 E-value=11 Score=40.85 Aligned_cols=135 Identities=9% Similarity=0.064 Sum_probs=76.6
Q ss_pred CccEEEEEeccc--ccCCHHHHHHHHHHHHHcCCEEEE-EecCCC------CcchHH---HHHHHHHcCCCCcEEEEecc
Q 043397 405 TVPLVVCITRLV--AQKGLHLITHAIKRAEELGGQMIL-LGNSPV------HWVQKD---FEDLANLHNKGTSTRILLMY 472 (596)
Q Consensus 405 ~~~~il~iGrl~--~~KGi~~ll~A~~~l~~~~~~lvI-vG~~~~------g~~~~~---l~~~~~~~~~~~~V~~~g~~ 472 (596)
+..+++..|.+. +.+-++.|..+++.+ +..|+. +.+... +..... .+...++. .++..+.+++
T Consensus 261 ~sVvyvsfGS~~~l~~~q~~ela~gL~~s---~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~--~~~g~v~~W~ 335 (455)
T PLN02152 261 SSVIYVSFGTMVELSKKQIEELARALIEG---KRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHEL--EEVGMIVSWC 335 (455)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHc---CCCeEEEEecCcccccccccccccccccchhHHHhc--cCCeEEEeeC
Confidence 466778888764 344455566666555 335554 332100 110000 12222222 3466777999
Q ss_pred CHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEe-----CCC
Q 043397 473 SEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFE-----GID 543 (596)
Q Consensus 473 ~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~-----~~d 543 (596)
|+. ++++..++.++-+. +-..+++||+.+|+|+|+-...+ ....+.+. -+.|+-+. .-+
T Consensus 336 PQ~---~iL~h~~vg~fvtH--~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~-------~~~G~~~~~~~~~~~~ 403 (455)
T PLN02152 336 SQI---EVLRHRAVGCFVTH--CGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEI-------WKTGVRVRENSEGLVE 403 (455)
T ss_pred CHH---HHhCCcccceEEee--CCcccHHHHHHcCCCEEeccccccchHHHHHHHHH-------hCceEEeecCcCCcCc
Confidence 984 47788886555443 33458999999999999954332 33333321 12454442 126
Q ss_pred HHHHHHHHHHHHH
Q 043397 544 EGSLNWALDRAFR 556 (596)
Q Consensus 544 ~~~la~~i~~ll~ 556 (596)
.+++.+++++++.
T Consensus 404 ~e~l~~av~~vm~ 416 (455)
T PLN02152 404 RGEIRRCLEAVME 416 (455)
T ss_pred HHHHHHHHHHHHh
Confidence 7899999999996
No 186
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=88.83 E-value=4.7 Score=41.68 Aligned_cols=98 Identities=17% Similarity=0.073 Sum_probs=71.8
Q ss_pred ccEEEEEe-cccccCC--HHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH
Q 043397 406 VPLVVCIT-RLVAQKG--LHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA 482 (596)
Q Consensus 406 ~~~il~iG-rl~~~KG--i~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a 482 (596)
..+++..| .-...|. .+...+.++.+.+.+.++++.|+ +...+..+++.+.++.. +.+.|..+-+++..+++
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~---~~e~e~~~~i~~~~~~~--~~l~~k~sL~e~~~li~ 250 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGG---PDEEERAEEIAKGLPNA--VILAGKTSLEELAALIA 250 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecC---hHHHHHHHHHHHhcCCc--cccCCCCCHHHHHHHHh
Confidence 34566777 5557776 45777777777777889999998 55556666676665432 33889999999999999
Q ss_pred hCCEEEEcCCCCCCchHHHHHHhcCCceEEe
Q 043397 483 AADIVLVPSIYEPCGLAQMIGMRYGAVPVVR 513 (596)
Q Consensus 483 ~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s 513 (596)
.||++|.+. +-..--|.|.|+|+|+-
T Consensus 251 ~a~l~I~~D-----Sg~~HlAaA~~~P~I~i 276 (334)
T COG0859 251 GADLVIGND-----SGPMHLAAALGTPTIAL 276 (334)
T ss_pred cCCEEEccC-----ChHHHHHHHcCCCEEEE
Confidence 999998652 22345678999999993
No 187
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=87.76 E-value=6.2 Score=36.99 Aligned_cols=38 Identities=11% Similarity=0.011 Sum_probs=25.4
Q ss_pred hhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeC
Q 043397 316 LLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILN 360 (596)
Q Consensus 316 ~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~n 360 (596)
+.+..+...|.|.+.|+..++.+...| .+.+++.+..|
T Consensus 142 ~~r~~l~~f~~i~aqs~~da~r~~~lG-------~~~~~v~v~Gn 179 (186)
T PF04413_consen 142 LFRPLLSRFDRILAQSEADAERFRKLG-------APPERVHVTGN 179 (186)
T ss_dssp HHHHHGGG-SEEEESSHHHHHHHHTTT--------S--SEEE---
T ss_pred HHHHHHHhCCEEEECCHHHHHHHHHcC-------CCcceEEEeCc
Confidence 456667778999999999999987765 55678888765
No 188
>PLN03015 UDP-glucosyl transferase
Probab=86.89 E-value=21 Score=38.68 Aligned_cols=80 Identities=8% Similarity=-0.128 Sum_probs=50.6
Q ss_pred cEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEe
Q 043397 465 STRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFE 540 (596)
Q Consensus 465 ~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~ 540 (596)
.+++.++.++.+ +++...+..+-+. +--.+.+||+.+|+|.|+-..-+ ....+.+. .+.|+-+.
T Consensus 336 Gl~v~~W~PQ~~---vL~h~~vg~fvtH--~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~-------~gvg~~~~ 403 (470)
T PLN03015 336 GLVVTQWAPQVE---ILSHRSIGGFLSH--CGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEE-------IGVAVRTS 403 (470)
T ss_pred ceEEEecCCHHH---HhccCccCeEEec--CCchhHHHHHHcCCCEEecccccchHHHHHHHHHH-------hCeeEEec
Confidence 367789999855 4555555443332 23458899999999999954433 22223221 24555552
Q ss_pred ------CCCHHHHHHHHHHHHH
Q 043397 541 ------GIDEGSLNWALDRAFR 556 (596)
Q Consensus 541 ------~~d~~~la~~i~~ll~ 556 (596)
.-+.+++.++|+++++
T Consensus 404 ~~~~~~~v~~e~i~~~v~~lm~ 425 (470)
T PLN03015 404 ELPSEKVIGREEVASLVRKIVA 425 (470)
T ss_pred ccccCCccCHHHHHHHHHHHHc
Confidence 1267899999999984
No 189
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.55 E-value=21 Score=39.19 Aligned_cols=185 Identities=14% Similarity=0.012 Sum_probs=111.2
Q ss_pred HHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCC-cEEEEe
Q 043397 394 IQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGT-STRILL 470 (596)
Q Consensus 394 ~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~-~V~~~g 470 (596)
.+..++++ ++.+++...-.+ +|=-...++.+.++.+ |+-.|++.-.+.-| .+.++..++++|+++ +|+|..
T Consensus 749 ~r~~y~Lp--~d~vvf~~FNqL--yKidP~~l~~W~~ILk~VPnS~LwllrfPa~g--e~rf~ty~~~~Gl~p~riifs~ 822 (966)
T KOG4626|consen 749 TRSQYGLP--EDAVVFCNFNQL--YKIDPSTLQMWANILKRVPNSVLWLLRFPAVG--EQRFRTYAEQLGLEPDRIIFSP 822 (966)
T ss_pred CCCCCCCC--CCeEEEeechhh--hcCCHHHHHHHHHHHHhCCcceeEEEeccccc--hHHHHHHHHHhCCCccceeecc
Confidence 34567886 555555555554 4444566777766655 67777776653223 378899999999986 588887
Q ss_pred ccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHH
Q 043397 471 MYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWA 550 (596)
Q Consensus 471 ~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~ 550 (596)
-...++=..-.+-+||.+-+...-| -.+-+|.+-.|+|+|.-....+..-|.--- -..-+.|-++.. +.++..+.
T Consensus 823 va~k~eHvrr~~LaDv~LDTplcnG-hTTg~dvLw~GvPmVTmpge~lAsrVa~Sl---l~~~Gl~hliak-~~eEY~~i 897 (966)
T KOG4626|consen 823 VAAKEEHVRRGQLADVCLDTPLCNG-HTTGMDVLWAGVPMVTMPGETLASRVAASL---LTALGLGHLIAK-NREEYVQI 897 (966)
T ss_pred ccchHHHHHhhhhhhhcccCcCcCC-cccchhhhccCCceeecccHHHHHHHHHHH---HHHcccHHHHhh-hHHHHHHH
Confidence 7666777778899999987655432 345678888999998743222221111000 000122323322 45555555
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHH
Q 043397 551 LDRAFRHFIDKPEEWNRIVQKIME-----NDNSWNNAAGKYMEIYNSI 593 (596)
Q Consensus 551 i~~ll~~~~~~~~~~~~~~~~~~~-----~~fs~~~~~~~~~~iy~~l 593 (596)
--++-. |.+.++.+..+... --|+-.+.+..+..+|.++
T Consensus 898 aV~Lat----d~~~L~~lr~~l~~~r~~splfd~~q~~~~LE~~y~~M 941 (966)
T KOG4626|consen 898 AVRLAT----DKEYLKKLRAKLRKARASSPLFDTKQYAKGLERLYLQM 941 (966)
T ss_pred HHHhhc----CHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHH
Confidence 445544 66666666533222 4588888888877777654
No 190
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=85.73 E-value=5.2 Score=32.15 Aligned_cols=39 Identities=18% Similarity=0.043 Sum_probs=25.2
Q ss_pred CCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCC
Q 043397 233 GVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNME 275 (596)
Q Consensus 233 ~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~ 275 (596)
..+.||||.|+..+.+.--.+.. .+..+.|+|+|-|+..
T Consensus 48 rE~I~IVHgH~a~S~l~hE~i~h----A~~mGlktVfTDHSLf 86 (90)
T PF08288_consen 48 RERIDIVHGHQAFSTLCHEAILH----ARTMGLKTVFTDHSLF 86 (90)
T ss_pred HcCeeEEEeehhhhHHHHHHHHH----HHhCCCcEEeeccccc
Confidence 37899999997554433222111 1145999999999754
No 191
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=83.62 E-value=11 Score=34.57 Aligned_cols=28 Identities=11% Similarity=0.073 Sum_probs=22.5
Q ss_pred cCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEe
Q 043397 324 SNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGI 358 (596)
Q Consensus 324 ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI 358 (596)
+|..++.|+..++++++.| .+.++|.+.
T Consensus 138 ~D~y~Vase~~~~~l~~~G-------i~~~~I~vt 165 (169)
T PF06925_consen 138 VDRYFVASEEVKEELIERG-------IPPERIHVT 165 (169)
T ss_pred CCEEEECCHHHHHHHHHcC-------CChhHEEEe
Confidence 7999999999999988766 456676553
No 192
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=82.79 E-value=13 Score=40.47 Aligned_cols=156 Identities=9% Similarity=0.042 Sum_probs=97.1
Q ss_pred EEec-ccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEE
Q 043397 411 CITR-LVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLV 489 (596)
Q Consensus 411 ~iGr-l~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~ 489 (596)
..|. -.-.||-+..++++.+. ..++-.|.+.. . +...+..-|.=+|.++.+++.++++.+-++|=
T Consensus 282 VyGK~~~~w~~k~~~l~~l~~~--~eih~tV~~~~---~---------~~~~~P~~V~NHG~l~~~ef~~lL~~akvfiG 347 (559)
T PF15024_consen 282 VYGKERYMWKGKEKYLDVLHKY--MEIHGTVYDEP---Q---------RPPNVPSFVKNHGILSGDEFQQLLRKAKVFIG 347 (559)
T ss_pred EEccchhhhcCcHHHHHHHHhh--cEEEEEeccCC---C---------CCcccchhhhhcCcCCHHHHHHHHHhhhEeee
Confidence 3354 34578888888888664 23454554441 1 01112223666788999999999999999993
Q ss_pred cC-CCCCCchHHHHHHhcCCceEEeCCCCcc-----cccc------ccCCC----C-CCCccceEEEeCCCHHHHHHHHH
Q 043397 490 PS-IYEPCGLAQMIGMRYGAVPVVRKTGGLA-----DTVF------DVDDP----S-NHEKANGFVFEGIDEGSLNWALD 552 (596)
Q Consensus 490 PS-~~E~~gl~~lEAma~G~pvI~s~~gg~~-----e~i~------~~~~~----~-~~~~~~G~lv~~~d~~~la~~i~ 552 (596)
-- -+| |=+.+||+|.|++.|-....... +... ....+ . .-+.-.-+.|+-.|.+++.++|+
T Consensus 348 lGfP~E--gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVytVd~~n~~~v~~Avk 425 (559)
T PF15024_consen 348 LGFPYE--GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVYTVDINNSTEVEAAVK 425 (559)
T ss_pred cCCCCC--CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeEEEEcCCCHHHHHHHHH
Confidence 32 134 34789999999999875432211 1111 11100 0 12234578888899999999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 043397 553 RAFRHFIDKPEEWNRIVQKIMENDNSWNNAAGKYMEIYNS 592 (596)
Q Consensus 553 ~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~iy~~ 592 (596)
++++. +- ...+--+||-+-+.+++..+.+.
T Consensus 426 ~il~~----~v------~Py~P~efT~egmLeRv~~~ie~ 455 (559)
T PF15024_consen 426 AILAT----PV------EPYLPYEFTCEGMLERVNALIEK 455 (559)
T ss_pred HHHhc----CC------CCcCCcccCHHHHHHHHHHHHHh
Confidence 99983 21 12223578888888887766653
No 193
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=81.66 E-value=6 Score=39.94 Aligned_cols=72 Identities=18% Similarity=0.138 Sum_probs=50.8
Q ss_pred CHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCC---CccccccccCCCCCCCccceEEEeCCCHHHHHH
Q 043397 473 SEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTG---GLADTVFDVDDPSNHEKANGFVFEGIDEGSLNW 549 (596)
Q Consensus 473 ~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~g---g~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~ 549 (596)
...+..+.|+.+...++|.=..++..-++|||++||.||....+ -+.+++ |+ ..-.+.++..+..+|.+
T Consensus 226 ~~~~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~l-dw-------~~fsv~v~~~~~~~l~~ 297 (302)
T PF03016_consen 226 SPSEYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVL-DW-------SRFSVRVPEADLPELPE 297 (302)
T ss_pred cchHHHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecCcccCCccccc-CH-------HHEEEEECHHHHHHHHH
Confidence 34447889999999999877777889999999999988885322 245555 32 45677776655555555
Q ss_pred HHH
Q 043397 550 ALD 552 (596)
Q Consensus 550 ~i~ 552 (596)
.|+
T Consensus 298 iL~ 300 (302)
T PF03016_consen 298 ILR 300 (302)
T ss_pred HHh
Confidence 443
No 194
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=79.83 E-value=2.3 Score=40.16 Aligned_cols=40 Identities=25% Similarity=0.202 Sum_probs=29.7
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccch
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECI 155 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~ 155 (596)
||||+....- =.+.-...|+++|.+.||+|.|++|..++.
T Consensus 1 M~ILlTNDDG-------i~a~Gi~aL~~~L~~~g~~V~VvAP~~~~S 40 (196)
T PF01975_consen 1 MRILLTNDDG-------IDAPGIRALAKALSALGHDVVVVAPDSEQS 40 (196)
T ss_dssp SEEEEE-SS--------TTSHHHHHHHHHHTTTSSEEEEEEESSSTT
T ss_pred CeEEEEcCCC-------CCCHHHHHHHHHHHhcCCeEEEEeCCCCCc
Confidence 8999886433 225567789999987889999999876654
No 195
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=79.37 E-value=36 Score=31.35 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=25.6
Q ss_pred CCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEE
Q 043397 234 VQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLT 270 (596)
Q Consensus 234 ~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~t 270 (596)
.+||+|.++...++....++.+.++.+...+.|+|+.
T Consensus 91 ~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyI 127 (170)
T PF08660_consen 91 ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYI 127 (170)
T ss_pred hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEE
Confidence 6899999997766655555555544444558888876
No 196
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=77.65 E-value=4.3 Score=34.94 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=24.8
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFY 152 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~ 152 (596)
|||+|+..... ...-...-...|+.+..++||+|.++.+..
T Consensus 1 Mki~fvmDpi~---~i~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMDPIE---SIKPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES-GG---G--TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred CeEEEEeCCHH---HCCCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 89999975332 211113445578999999999999998653
No 197
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=74.90 E-value=3.8 Score=45.01 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=28.9
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFY 152 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~ 152 (596)
-||+.+++.+.+ ---.+...++++|+++||+|+|++|..
T Consensus 21 ~kIl~~~P~~~~-----SH~~~~~~l~~~La~rGH~VTvi~p~~ 59 (507)
T PHA03392 21 ARILAVFPTPAY-----SHHSVFKVYVEALAERGHNVTVIKPTL 59 (507)
T ss_pred ccEEEEcCCCCC-----cHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 368877643322 225677789999999999999998764
No 198
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=73.48 E-value=4.7 Score=34.97 Aligned_cols=46 Identities=17% Similarity=0.081 Sum_probs=29.9
Q ss_pred HHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccc
Q 043397 475 ELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLAD 520 (596)
Q Consensus 475 ~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e 520 (596)
+.+..++..+|+++--|.-+..--.+-.++.+|+|+|+..+|.-.+
T Consensus 59 ~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~ 104 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFSDE 104 (124)
T ss_dssp S-HHHHTTH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSHHH
T ss_pred hhHHHhcccCCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCCHH
Confidence 3477888889999977754544445667788999999987776443
No 199
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=72.68 E-value=74 Score=30.54 Aligned_cols=147 Identities=14% Similarity=0.142 Sum_probs=79.4
Q ss_pred CCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCC--CCCccEEEEEecccccCCHHHHHH-HHHHHHHcC-C
Q 043397 361 GIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKS--EGTVPLVVCITRLVAQKGLHLITH-AIKRAEELG-G 436 (596)
Q Consensus 361 Gid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~--~~~~~~il~iGrl~~~KGi~~ll~-A~~~l~~~~-~ 436 (596)
|-....|++.+.+++-++.....+-........+++.+.+.. ....-.|+|+|+ ..+...+++ |+.+...-- .
T Consensus 61 Gh~t~~wn~~m~pyiyG~R~Gi~IIdLdqT~~~Lr~A~~fVa~vA~r~GiILFv~t---n~~~~~~ve~aA~r~~gy~~~ 137 (251)
T KOG0832|consen 61 GHKTGKWNPRMKPYIYGKRLGIHIIDLDQTASYLRRALNFVAHVAHRGGIILFVGT---NNGFKDLVERAARRAGGYSHN 137 (251)
T ss_pred cccccccCcccchhhcccccCcEEEecHHHHHHHHHHHHHHHHHHhcCCeEEEEec---CcchHHHHHHHHHHhcCceee
Confidence 444556666666666555555444344444555655553321 145678889887 444455555 444443211 1
Q ss_pred EEEEEecC-CCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEE-eC
Q 043397 437 QMILLGNS-PVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVV-RK 514 (596)
Q Consensus 437 ~lvIvG~~-~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~-s~ 514 (596)
+-..-|-- +.+.....+.. +.+...+.+.|...... |++|+-...|. -.+++||.-+++|+|+ -|
T Consensus 138 ~~w~~G~lTN~~~l~g~~~~--~~~~~pd~~~f~~t~~~----------D~vvvln~~e~-~sAilEA~K~~IPTIgIVD 204 (251)
T KOG0832|consen 138 RKWLGGLLTNARELFGALVR--KFLSLPDALCFLPTLTP----------DLVVVLNPEEN-HSAILEAAKMAIPTIGIVD 204 (251)
T ss_pred eeeccceeecchhhcccccc--cccCCCcceeecccCCc----------ceeEecCcccc-cHHHHHHHHhCCCeEEEec
Confidence 22222210 00111111111 22233445666655544 88888877776 4689999999999998 46
Q ss_pred CCCcccccc
Q 043397 515 TGGLADTVF 523 (596)
Q Consensus 515 ~gg~~e~i~ 523 (596)
+-.-++++.
T Consensus 205 tN~~P~liT 213 (251)
T KOG0832|consen 205 TNCNPELIT 213 (251)
T ss_pred CCCCcccee
Confidence 556677664
No 200
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=72.37 E-value=83 Score=32.98 Aligned_cols=96 Identities=13% Similarity=0.127 Sum_probs=60.5
Q ss_pred chHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC-ccccccccCC
Q 043397 449 VQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG-LADTVFDVDD 527 (596)
Q Consensus 449 ~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg-~~e~i~~~~~ 527 (596)
...-....+.......++.+...-..+++-..+++||+.|-.-++ .++=||+.|+|+|+=.... ...+.++.
T Consensus 251 d~~va~~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~H-----saI~al~~g~p~i~i~Y~~K~~~l~~~~-- 323 (385)
T COG2327 251 DLAVADAIAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMRLH-----SAIMALAFGVPAIAIAYDPKVRGLMQDL-- 323 (385)
T ss_pred hhHHHHHHHhhcCCccceEeecchHHHHHHHHhccCceEEeehhH-----HHHHHHhcCCCeEEEeecHHHHHHHHHc--
Confidence 334444445444434567766333367777899999999855443 5778899999999954443 33444432
Q ss_pred CCCCCccceEEE--eCCCHHHHHHHHHHHHH
Q 043397 528 PSNHEKANGFVF--EGIDEGSLNWALDRAFR 556 (596)
Q Consensus 528 ~~~~~~~~G~lv--~~~d~~~la~~i~~ll~ 556 (596)
+..++.. .+.|.+.+.....+.+.
T Consensus 324 -----gl~~~~~~i~~~~~~~l~~~~~e~~~ 349 (385)
T COG2327 324 -----GLPGFAIDIDPLDAEILSAVVLERLT 349 (385)
T ss_pred -----CCCcccccCCCCchHHHHHHHHHHHh
Confidence 2344444 45577888888777776
No 201
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=71.20 E-value=20 Score=34.08 Aligned_cols=33 Identities=15% Similarity=0.386 Sum_probs=23.7
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcC--CeEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRG--HTVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~G--h~V~vi~ 149 (596)
+|||++++ +|.+.....+.+++.+.+ ++|.++.
T Consensus 1 m~ki~vl~---------sg~gs~~~~ll~~~~~~~~~~~I~~vv 35 (200)
T PRK05647 1 MKRIVVLA---------SGNGSNLQAIIDACAAGQLPAEIVAVI 35 (200)
T ss_pred CceEEEEE---------cCCChhHHHHHHHHHcCCCCcEEEEEE
Confidence 58999986 344777888999988765 5666544
No 202
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=71.11 E-value=5.5 Score=36.90 Aligned_cols=35 Identities=29% Similarity=0.387 Sum_probs=26.9
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecccc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYE 153 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~ 153 (596)
|||.+|.+ .+..-..++++..++||+|+.++....
T Consensus 1 mKIaiIgA----------sG~~Gs~i~~EA~~RGHeVTAivRn~~ 35 (211)
T COG2910 1 MKIAIIGA----------SGKAGSRILKEALKRGHEVTAIVRNAS 35 (211)
T ss_pred CeEEEEec----------CchhHHHHHHHHHhCCCeeEEEEeChH
Confidence 89999953 244556788999999999999985433
No 203
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=71.04 E-value=33 Score=30.71 Aligned_cols=95 Identities=16% Similarity=0.116 Sum_probs=57.1
Q ss_pred ccEEEEEecccccCCHHHHHHHH------HHHHHcCC-EEEE-EecCCCCc-chHHHHHHHHHcCCCCcEEEEeccCHHH
Q 043397 406 VPLVVCITRLVAQKGLHLITHAI------KRAEELGG-QMIL-LGNSPVHW-VQKDFEDLANLHNKGTSTRILLMYSEEL 476 (596)
Q Consensus 406 ~~~il~iGrl~~~KGi~~ll~A~------~~l~~~~~-~lvI-vG~~~~g~-~~~~l~~~~~~~~~~~~V~~~g~~~~~~ 476 (596)
.-+++.+|.-. +|.||.++ +.+.+.++ +|+| +|. |. .-..-.+.+. ....+.+.++--...
T Consensus 4 ~~vFVTVGtT~----Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Gr---g~~~~~d~~~~~~---k~~gl~id~y~f~ps 73 (170)
T KOG3349|consen 4 MTVFVTVGTTS----FDDLISCVLSEEFLQELQKRGFTKLIIQIGR---GQPFFGDPIDLIR---KNGGLTIDGYDFSPS 73 (170)
T ss_pred eEEEEEecccc----HHHHHHHHcCHHHHHHHHHcCccEEEEEecC---CccCCCCHHHhhc---ccCCeEEEEEecCcc
Confidence 34677888643 88888776 33333454 6666 676 41 1111111111 123455554433334
Q ss_pred HHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeC
Q 043397 477 SHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRK 514 (596)
Q Consensus 477 l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~ 514 (596)
+.++++.||+++. -+-.-+++|-+..|+|.|+--
T Consensus 74 l~e~I~~AdlVIs----HAGaGS~letL~l~KPlivVv 107 (170)
T KOG3349|consen 74 LTEDIRSADLVIS----HAGAGSCLETLRLGKPLIVVV 107 (170)
T ss_pred HHHHHhhccEEEe----cCCcchHHHHHHcCCCEEEEe
Confidence 8889999999993 244558999999999999843
No 204
>PRK09358 adenosine deaminase; Provisional
Probab=69.60 E-value=1.4e+02 Score=30.72 Aligned_cols=147 Identities=10% Similarity=-0.011 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHcCCEEEE-EecCCCCcchHHHHHHHHHcCCCCcEEEEe-cc-CHHHHHHHHHhCCEEE--EcCCCC-
Q 043397 421 LHLITHAIKRAEELGGQMIL-LGNSPVHWVQKDFEDLANLHNKGTSTRILL-MY-SEELSHMLYAAADIVL--VPSIYE- 494 (596)
Q Consensus 421 i~~ll~A~~~l~~~~~~lvI-vG~~~~g~~~~~l~~~~~~~~~~~~V~~~g-~~-~~~~l~~~~a~aDi~l--~PS~~E- 494 (596)
.+.+.++++..++.++.+.+ +|. ...........+.+|.. ++ -+| .+ ++++..++++..++.+ +|+..-
T Consensus 181 ~~~~~~~~~~A~~~g~~~~~H~~E---~~~~~~~~~al~~lg~~-ri-~Hg~~l~~~~~~~~~l~~~gi~v~~cP~Sn~~ 255 (340)
T PRK09358 181 PSKFARAFDRARDAGLRLTAHAGE---AGGPESIWEALDELGAE-RI-GHGVRAIEDPALMARLADRRIPLEVCPTSNVQ 255 (340)
T ss_pred HHHHHHHHHHHHHCCCCeEEcCCC---CCchhHHHHHHHHcCCc-cc-chhhhhccCHHHHHHHHHcCCeEEECCCcccc
Confidence 45666777777666665544 343 11223344444445532 33 232 33 2566788899998775 676431
Q ss_pred -----CCc-hHHHHHHhcCCceEE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHH
Q 043397 495 -----PCG-LAQMIGMRYGAVPVV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNR 567 (596)
Q Consensus 495 -----~~g-l~~lEAma~G~pvI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~ 567 (596)
.++ -.+-+.+..|+||.. ||.++.. . .++.+.+..+...+.-+++.+.+
T Consensus 256 l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~--------------------~----~~l~~e~~~~~~~~~l~~~el~~ 311 (340)
T PRK09358 256 TGAVPSLAEHPLKTLLDAGVRVTINTDDPLVF--------------------G----TTLTEEYEALAEAFGLSDEDLAQ 311 (340)
T ss_pred ccccCCcccChHHHHHHCCCEEEECCCCCccc--------------------C----CCHHHHHHHHHHHhCCCHHHHHH
Confidence 112 245778889987766 4433211 1 12333333333333336777888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Q 043397 568 IVQKIMENDNSWNNAAGKYMEIYNSIRVG 596 (596)
Q Consensus 568 ~~~~~~~~~fs~~~~~~~~~~iy~~l~~~ 596 (596)
+.+++++..|--+..-+++.+-+++..+|
T Consensus 312 l~~nai~~sf~~~~~k~~l~~~~~~~~~~ 340 (340)
T PRK09358 312 LARNALEAAFLSEEEKAALLAEVDAWLAA 340 (340)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhcC
Confidence 88888887777777778887777765543
No 205
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=67.69 E-value=61 Score=29.12 Aligned_cols=139 Identities=15% Similarity=0.095 Sum_probs=81.1
Q ss_pred EEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhC--CEEEEcCC-CCCCchHHHHHHhcCC----c
Q 043397 437 QMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAA--DIVLVPSI-YEPCGLAQMIGMRYGA----V 509 (596)
Q Consensus 437 ~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~a--Di~l~PS~-~E~~gl~~lEAma~G~----p 509 (596)
.|+|+-+ |......+....++.|.. |.....+ ++.....+.. ...++-.+ -.+.|+.++|++..-. .
T Consensus 11 ~lllvdD--D~~f~~~LaRa~e~RGf~--v~~a~~~--~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr~~~~d~ri 84 (182)
T COG4567 11 SLLLVDD--DTPFLRTLARAMERRGFA--VVTAESV--EEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRERRADMRI 84 (182)
T ss_pred eeEEecC--ChHHHHHHHHHHhccCce--eEeeccH--HHHHHHHhcCCCceEEEEeeecCCCchHHHHHHHhcCCcceE
Confidence 5666665 133334444433333331 3333332 3343443332 22233332 3589999999987654 3
Q ss_pred eEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH----hcc-----CCHHHHHHHHHHHHHhcCCHH
Q 043397 510 PVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR----HFI-----DKPEEWNRIVQKIMENDNSWN 580 (596)
Q Consensus 510 vI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~----~~~-----~~~~~~~~~~~~~~~~~fs~~ 580 (596)
+|.+..+.+.-.|+-..- |.+-++..|.|.+++..++.+--. ... .+.-+|+.+.+-..+..++..
T Consensus 85 vvLTGy~sIATAV~AvKl-----GA~~YLaKPAdaDdi~aAl~~~~~d~~~~~~~~pmS~~rl~WEhIqrvl~e~~~NiS 159 (182)
T COG4567 85 VVLTGYASIATAVEAVKL-----GACDYLAKPADADDILAALLRREPDEDTAPPENPMSADRLRWEHIQRVLEECEGNIS 159 (182)
T ss_pred EEEecchHHHHHHHHHHh-----hhhhhcCCCCChHHHHHHHhhcCCCcccCCCCCCCchhHhhHHHHHHHHHHhCCCHH
Confidence 566777777666554322 678899999999999888866511 000 134567777776666788888
Q ss_pred HHHHHH
Q 043397 581 NAAGKY 586 (596)
Q Consensus 581 ~~~~~~ 586 (596)
..+.++
T Consensus 160 eTARrL 165 (182)
T COG4567 160 ETARRL 165 (182)
T ss_pred HHHHHh
Confidence 887765
No 206
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=67.42 E-value=75 Score=34.55 Aligned_cols=95 Identities=5% Similarity=-0.089 Sum_probs=55.3
Q ss_pred ccEEEEEeccc-----ccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcC--CCCcEEEEeccCHHHHH
Q 043397 406 VPLVVCITRLV-----AQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHN--KGTSTRILLMYSEELSH 478 (596)
Q Consensus 406 ~~~il~iGrl~-----~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~--~~~~V~~~g~~~~~~l~ 478 (596)
..+++..|... +.+-...+..+++++ +++.|+..=. +..... +.+.+. ..++|.+.++.|+.++.
T Consensus 278 ~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~--~~~~FiW~~~---~~~~~~---~~~~~~~~~~~nV~~~~W~PQ~~ll 349 (496)
T KOG1192|consen 278 SVVYISFGSMVNSADLPEEQKKELAKALESL--QGVTFLWKYR---PDDSIY---FPEGLPNRGRGNVVLSKWAPQNDLL 349 (496)
T ss_pred CeEEEECCcccccccCCHHHHHHHHHHHHhC--CCceEEEEec---CCcchh---hhhcCCCCCcCceEEecCCCcHHHh
Confidence 45666677764 455566677777766 4777666554 211111 222222 13578888999997765
Q ss_pred HHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEE
Q 043397 479 MLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVV 512 (596)
Q Consensus 479 ~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~ 512 (596)
++..-+.++-+ +-|++. .+|+..+|+|.|+
T Consensus 350 --l~H~~v~~FvT-HgG~nS-t~E~~~~GvP~v~ 379 (496)
T KOG1192|consen 350 --LDHPAVGGFVT-HGGWNS-TLESIYSGVPMVC 379 (496)
T ss_pred --cCCCcCcEEEE-CCcccH-HHHHHhcCCceec
Confidence 22222222222 234443 4999999999996
No 207
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=65.22 E-value=9.9 Score=33.23 Aligned_cols=20 Identities=45% Similarity=0.627 Sum_probs=16.6
Q ss_pred HhHHHHHHHhcCCeEEEEec
Q 043397 131 VTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 131 ~~~La~aL~~~Gh~V~vi~p 150 (596)
...|+++|.++||+|.+.++
T Consensus 15 ~lala~~L~~rGh~V~~~~~ 34 (139)
T PF03033_consen 15 FLALARALRRRGHEVRLATP 34 (139)
T ss_dssp HHHHHHHHHHTT-EEEEEET
T ss_pred HHHHHHHHhccCCeEEEeec
Confidence 34799999999999998885
No 208
>KOG2099 consensus Glycogen phosphorylase [Carbohydrate transport and metabolism]
Probab=64.97 E-value=19 Score=39.06 Aligned_cols=212 Identities=20% Similarity=0.186 Sum_probs=122.4
Q ss_pred cchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCcc---------------
Q 043397 313 RLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPA--------------- 377 (596)
Q Consensus 313 ~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~--------------- 377 (596)
+.++-..|+.-+.+|-.|.+-+-+.+. ...+..++...++|..--.|||.+..|--...+.+--
T Consensus 440 ~i~MA~L~ivgsHaVNGVa~iHSeilK-~~~F~Df~e~~P~KFqNkTNGITPRRWL~~cnP~LadlI~e~ige~~i~dl~ 518 (843)
T KOG2099|consen 440 RINMAHLCIVGSHAVNGVAEIHSEILK-QSVFKDFYELEPEKFQNKTNGITPRRWLLLCNPGLADLITEKIGEEWITDLD 518 (843)
T ss_pred eeeeeeeeeecccccccHHHHHHHHHH-HHHHHHHHHhChHHhccccCCcCHHHHHHhcCchHHHHHHHHhhhHhhhhHH
Confidence 455555556556666555543333333 3335566666678888888999876653221111100
Q ss_pred ------ccC----------CCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHH----HHHHHHHHHH-c--
Q 043397 378 ------KFH----------AQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHL----ITHAIKRAEE-L-- 434 (596)
Q Consensus 378 ------~~~----------~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~----ll~A~~~l~~-~-- 434 (596)
+|- ..+.+.|..-.+.+.++++...+++...=+.+-|+..+|+..+ ++-.+.++++ +
T Consensus 519 ~l~~L~~~a~d~~f~~~~a~vK~~NKlk~a~~le~e~~v~inp~smFDiqVKRIHEYKRQllN~l~vi~~y~riK~e~~k 598 (843)
T KOG2099|consen 519 QLTKLRKFADDEEFQREWAKVKQENKLKLAAYLEKEYGVKINPSSMFDIQVKRIHEYKRQLLNCLHVIYLYNRIKEEPAK 598 (843)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhHHHHHHHHHHHhCcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 010 1222344444556667777655555555567778888886332 3333444544 2
Q ss_pred C--CEEEEEec-CCCCcc-hHHHHHHHHHc----------CCCCcEEEEeccCHHHHHHHHHhCCEEEEcC--CCCCCch
Q 043397 435 G--GQMILLGN-SPVHWV-QKDFEDLANLH----------NKGTSTRILLMYSEELSHMLYAAADIVLVPS--IYEPCGL 498 (596)
Q Consensus 435 ~--~~lvIvG~-~~~g~~-~~~l~~~~~~~----------~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS--~~E~~gl 498 (596)
. -+.+++|+ +..|.. ...+.+++..- |..-+|+|+..+.-.....++-++|+-=.-| --|..|.
T Consensus 599 ~fvprtvm~GGKaapgY~mAK~Iiklit~V~dvVN~Dp~vgd~LKViFl~nY~Vs~AE~iIPasdLSe~ISTAGtEASGT 678 (843)
T KOG2099|consen 599 AFVPRTVMIGGKAAPGYHMAKLIIKLITAVADVVNNDPEVGDRLKVIFLENYRVSLAEKIIPASDLSEQISTAGTEASGT 678 (843)
T ss_pred ccCceEEEEcCccCchhHHHHHHHHHHHHHHHHhcCChhhhheeEEEEecCcccchhhhccchHHHHHHhhhccccccCC
Confidence 1 25667765 223433 33444554322 1122488887766655667888888764333 3588999
Q ss_pred HHHHHHhcCCceEEeCCCCcccccccc
Q 043397 499 AQMIGMRYGAVPVVRKTGGLADTVFDV 525 (596)
Q Consensus 499 ~~lEAma~G~pvI~s~~gg~~e~i~~~ 525 (596)
.-|.-|..|+..|.+-.|.-.|+-++.
T Consensus 679 ~NMKF~lNG~l~IGTlDGANVEm~eE~ 705 (843)
T KOG2099|consen 679 GNMKFMLNGALTIGTLDGANVEMAEEA 705 (843)
T ss_pred CcceEEecCeEEEecccccchHHHHHc
Confidence 999999999999999888876666553
No 209
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=63.64 E-value=17 Score=28.63 Aligned_cols=42 Identities=12% Similarity=0.170 Sum_probs=35.9
Q ss_pred ccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCC
Q 043397 321 IVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPAT 371 (596)
Q Consensus 321 ~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~ 371 (596)
....|.|++..+...+++++.| ..+++.+|-++|+..+.|..
T Consensus 16 ~~~~~~iFt~D~~~~~~~~~~G---------~~~V~yLPLAa~~~~~~p~~ 57 (79)
T PF12996_consen 16 ANSYDYIFTFDRSFVEEYRNLG---------AENVFYLPLAANPERFRPIP 57 (79)
T ss_pred CCCCCEEEEECHHHHHHHHHcC---------CCCEEEccccCCHHHhCccc
Confidence 4557999999999999988776 67999999999999988763
No 210
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=62.73 E-value=87 Score=29.47 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=51.6
Q ss_pred HHHHHcCCEEEEEecCCCCc-chHHHHHHHHHcCCC-CcEEEE-eccCHHHHH-----------------------HHHH
Q 043397 429 KRAEELGGQMILLGNSPVHW-VQKDFEDLANLHNKG-TSTRIL-LMYSEELSH-----------------------MLYA 482 (596)
Q Consensus 429 ~~l~~~~~~lvIvG~~~~g~-~~~~l~~~~~~~~~~-~~V~~~-g~~~~~~l~-----------------------~~~a 482 (596)
..+...+.+++++|. .+ ....+++.+++.+.. -+-+++ |.++.-... ....
T Consensus 50 ~~i~~~~g~iLfV~t---~~~~~~~v~~~a~~~~~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~~~~~k~~~g~~~~~~ 126 (193)
T cd01425 50 ANIAAKGGKILFVGT---KPQAQRAVKKFAERTGSFYVNGRWLGGTLTNWKTIRKSIKRLKKLEKEKLEKNLGGIKDMFR 126 (193)
T ss_pred HHHHhCCCEEEEEEC---CHHHHHHHHHHHHHcCCeeecCeecCCcCCCHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 333345778888887 33 334445555543321 112455 444432211 1234
Q ss_pred hCCEEEEcCCCCCCchHHHHHHhcCCceEE-eCCCCccccc
Q 043397 483 AADIVLVPSIYEPCGLAQMIGMRYGAVPVV-RKTGGLADTV 522 (596)
Q Consensus 483 ~aDi~l~PS~~E~~gl~~lEAma~G~pvI~-s~~gg~~e~i 522 (596)
.-|++++....+. ..++.||...|+|+|+ .|+..-.+.+
T Consensus 127 ~Pdlviv~~~~~~-~~ai~Ea~~l~IP~I~i~Dtn~~~~~i 166 (193)
T cd01425 127 LPDLVIVLDPRKE-HQAIREASKLGIPVIAIVDTNCDPDLI 166 (193)
T ss_pred CCCEEEEeCCccc-hHHHHHHHHcCCCEEEEecCCCCCccc
Confidence 5677777665433 6789999999999999 4655545544
No 211
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=62.66 E-value=1.4e+02 Score=28.15 Aligned_cols=109 Identities=10% Similarity=-0.004 Sum_probs=63.7
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEec-cCHHHHHHHHH--hCCEEEEcCCCCC----CchHHHHHHh--
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLM-YSEELSHMLYA--AADIVLVPSIYEP----CGLAQMIGMR-- 505 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~-~~~~~l~~~~a--~aDi~l~PS~~E~----~gl~~lEAma-- 505 (596)
+++++|+.+. ......++...+. .+.+...+. -+.++....+. ..|++++-....+ .|+.+++.+.
T Consensus 3 ~~~Ilivdd~--~~~~~~l~~~L~~---~~~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~ 77 (216)
T PRK10840 3 NMNVIIADDH--PIVLFGIRKSLEQ---IEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRH 77 (216)
T ss_pred ceEEEEECCc--HHHHHHHHHHHhc---CCCCEEEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHH
Confidence 3566777761 2233444554443 233433432 33444555543 4698887654433 5777776664
Q ss_pred -cCCceEE-eCCCC---ccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 506 -YGAVPVV-RKTGG---LADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 506 -~G~pvI~-s~~gg---~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
-++|+|+ +.... ..+.+.. |..||+..+.++++|..+|..+..
T Consensus 78 ~~~~~iIvls~~~~~~~~~~a~~~--------Ga~~yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 78 FPSLSIIVLTMNNNPAILSAVLDL--------DIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred CCCCcEEEEEecCCHHHHHHHHHC--------CCeEEEECCCCHHHHHHHHHHHHC
Confidence 3456666 44333 2233444 789999999999999999998875
No 212
>PLN02572 UDP-sulfoquinovose synthase
Probab=62.20 E-value=12 Score=40.24 Aligned_cols=38 Identities=26% Similarity=0.192 Sum_probs=28.0
Q ss_pred cccCCCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 102 IEKDSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 102 ~~~~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
.++..+.|+|++. ||.+-.-..|++.|.++||+|.++-
T Consensus 41 ~~~~~~~k~VLVT----------GatGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 41 SSSSSKKKKVMVI----------GGDGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred CCccccCCEEEEE----------CCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 3444455677654 6666666789999999999999874
No 213
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=61.33 E-value=1.8e+02 Score=28.99 Aligned_cols=158 Identities=12% Similarity=0.015 Sum_probs=79.4
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchH-HHHHHHHHcCCCCcEEEEeccCHHHHHHHH--
Q 043397 405 TVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQK-DFEDLANLHNKGTSTRILLMYSEELSHMLY-- 481 (596)
Q Consensus 405 ~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~-~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~-- 481 (596)
..+.+++++.-.+.|.++.++++++.- +-++.+.+. +.|.... ....+.++.|+. +.+..+-...+...-+
T Consensus 77 ~~~~vl~v~~dsp~~t~~eli~~ak~~---p~~~~~g~~-g~g~~~hl~~~~l~~~~G~~--~~~Vpy~G~~~~~~allg 150 (274)
T PF03401_consen 77 SDPNVLVVRADSPYKTLEELIEYAKAN---PGKLTFGSS-GPGSSDHLAAALLAKAAGIK--FTHVPYDGGAEALTALLG 150 (274)
T ss_dssp EEEEEEEEETTSS-SSHHHHHHHHHCS---CCC-EEEES-STTSHHHHHHHHHHHHHT-----EEEE-SSHHHHHHHHHT
T ss_pred ccceEEEEeCCCccccHHHHHHHHHhC---CCCeEEEec-CCCchHHHHHHHHHHHhCCc--eEEEEeCCccHHHHHHhC
Confidence 356778888889999999999998652 234444332 2243333 334566677764 5566655443343333
Q ss_pred HhCCEEEEcCCCCCCchHHHHHHhcCCc-eEEe----CCCCccccc---cccCCCCCCCccceEEEeCCCHHHHHHHHHH
Q 043397 482 AAADIVLVPSIYEPCGLAQMIGMRYGAV-PVVR----KTGGLADTV---FDVDDPSNHEKANGFVFEGIDEGSLNWALDR 553 (596)
Q Consensus 482 a~aDi~l~PS~~E~~gl~~lEAma~G~p-vI~s----~~gg~~e~i---~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ 553 (596)
-.+|+.+.. .-........|.. +|+. ....++|+- +.+..+.....-.|+.++.+.+++..+.|.+
T Consensus 151 G~vd~~~~~------~~~~~~~~~~G~~k~Lav~~~~r~~~~pdvPT~~E~G~~d~~~~~~~g~~~p~gtp~~~~~~l~~ 224 (274)
T PF03401_consen 151 GHVDAAFGS------PGEALPYVEAGDLKPLAVFSDERSPALPDVPTFKEQGYPDIVFGSWRGLFAPKGTPDEIVDKLAD 224 (274)
T ss_dssp TSSSEEEEE------HHHHHHHHHTTSEEEEEECSSS-BTTCTTS-BTTTTT-TTG--EEEEEEEEETTS-HHHHHHHHH
T ss_pred CeeeEEeec------HHHHHHHHhCCCceEEEEecCccccccCCCCCHHHhCccceeeeeeeeeecCCCCCHHHHHHHHH
Confidence 344665532 1123333344432 2221 111122211 1100011122346888898889988888888
Q ss_pred HHHhccCCHHHHHHHHHHHHH
Q 043397 554 AFRHFIDKPEEWNRIVQKIME 574 (596)
Q Consensus 554 ll~~~~~~~~~~~~~~~~~~~ 574 (596)
++....++|+..+.+.+..+.
T Consensus 225 a~~~~~~~pe~~~~~~~~g~~ 245 (274)
T PF03401_consen 225 AIKKALEDPEFQEFLEKMGLE 245 (274)
T ss_dssp HHHHHHT-HHHHHHHHHHTEE
T ss_pred HHHHHhCCHHHHHHHHHCCCc
Confidence 777666688776666655544
No 214
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=61.04 E-value=11 Score=36.24 Aligned_cols=32 Identities=34% Similarity=0.408 Sum_probs=27.0
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
|||.+| ||.+.+-..+++.|.+.||+|.++..
T Consensus 1 MkI~II----------GG~G~mG~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 1 MKIAVL----------GGTGDQGKGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred CEEEEE----------cCCCHHHHHHHHHHHhCCCEEEEEEc
Confidence 788877 66778888999999999999998754
No 215
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=60.98 E-value=58 Score=30.58 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=23.9
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCC--eEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGH--TVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh--~V~vi~p~ 151 (596)
|||+++. +|.+.....+.+++.+.++ +|.++.+.
T Consensus 1 ~riail~---------sg~gs~~~~ll~~~~~~~l~~~I~~vi~~ 36 (190)
T TIGR00639 1 KRIVVLI---------SGNGSNLQAIIDACKEGKIPASVVLVISN 36 (190)
T ss_pred CeEEEEE---------cCCChhHHHHHHHHHcCCCCceEEEEEEC
Confidence 6888875 4447788899999988766 55554443
No 216
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=60.18 E-value=17 Score=31.82 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=28.8
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCe-EEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHT-VDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~-V~vi~ 149 (596)
||++++.... |+ .+-..+-+.++|+++.+.||+ |.|+.
T Consensus 1 m~~~iv~~~~-Py--~~~~~~~al~~A~aa~~~gh~v~~vFf 39 (128)
T PRK00207 1 MRYAIAVTGP-AY--GTQQASSAYQFAQALLAEGHELVSVFF 39 (128)
T ss_pred CEEEEEEcCC-CC--CCHHHHHHHHHHHHHHhCCCCeeEEEE
Confidence 7888886544 53 345568888999999999998 47775
No 217
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=59.85 E-value=68 Score=31.11 Aligned_cols=45 Identities=16% Similarity=0.145 Sum_probs=37.3
Q ss_pred EEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCC
Q 043397 466 TRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKT 515 (596)
Q Consensus 466 V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~ 515 (596)
.......+.+++..+++.||++|....+ ..+=|+++|+|+|+-+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~Is~RlH-----~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 240 IIIDYSLSPDELLELISQADLVISMRLH-----GAILALSLGVPVIAISY 284 (286)
T ss_pred eEecCCCCHHHHHHHHhcCCEEEecCCH-----HHHHHHHcCCCEEEEec
Confidence 4555778899999999999999977666 56788999999998543
No 218
>PRK04531 acetylglutamate kinase; Provisional
Probab=59.25 E-value=50 Score=35.02 Aligned_cols=67 Identities=12% Similarity=0.101 Sum_probs=40.2
Q ss_pred CCccEEEEEec-ccccCCHHHHHHHHHHHHHcCCEEEEE-ecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHH
Q 043397 404 GTVPLVVCITR-LVAQKGLHLITHAIKRAEELGGQMILL-GNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELS 477 (596)
Q Consensus 404 ~~~~~il~iGr-l~~~KGi~~ll~A~~~l~~~~~~lvIv-G~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l 477 (596)
+.+..|+-+|. +-. ..++.+.+.+..+...+.+++|+ |. | .++.++.++.|+.+...---++.+++.
T Consensus 35 ~~~~~VIKiGG~~l~-~~~~~l~~dla~L~~~G~~~VlVHGg---g---pqI~~~l~~~gie~~~v~G~RVTd~~t 103 (398)
T PRK04531 35 AERFAVIKVGGAVLR-DDLEALASSLSFLQEVGLTPIVVHGA---G---PQLDAELDAAGIEKETVNGLRVTSPEA 103 (398)
T ss_pred CCcEEEEEEChHHhh-cCHHHHHHHHHHHHHCCCcEEEEECC---C---HHHHHHHHHcCCCcEEECCEecCCHHH
Confidence 45666666664 432 35788888888887777877665 65 4 455566777777644222124444443
No 219
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=59.07 E-value=2.4e+02 Score=30.19 Aligned_cols=87 Identities=15% Similarity=0.049 Sum_probs=53.0
Q ss_pred CCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043397 495 PCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME 574 (596)
Q Consensus 495 ~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~ 574 (596)
-.|..+--+.+.|+|+....+|--.+-++..+ .+.-...+..-+|..+|.+.+++.++ .+..+++.++...
T Consensus 254 ~~G~~lsi~~~~~~PI~fi~~Ge~i~dl~~f~----p~~~~~~iLg~gD~~~l~e~~~~~~~-----~~~~~~~~~~~~~ 324 (428)
T TIGR00959 254 RGGAALSVRSVTGKPIKFIGVGEKIDDLEPFH----PERMASRILGMGDILSLVEKAQEVVD-----EEEAKKLAEKMKK 324 (428)
T ss_pred cccHHHHHHHHHCcCEEEEeCCCChhhCccCC----HHHHHHHHhCCCChHHHHHHHHHhhC-----HHHHHHHHHHHHh
Confidence 35666666677899888866653212221111 01112333445688888888887764 3445566666666
Q ss_pred hcCCHHHHHHHHHHHH
Q 043397 575 NDNSWNNAAGKYMEIY 590 (596)
Q Consensus 575 ~~fs~~~~~~~~~~iy 590 (596)
..|+.+.+.+++.++-
T Consensus 325 ~~f~l~d~~~q~~~~~ 340 (428)
T TIGR00959 325 GQFDLEDFLEQLRQIK 340 (428)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 7899999988887664
No 220
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=59.05 E-value=2.4e+02 Score=29.78 Aligned_cols=141 Identities=13% Similarity=0.029 Sum_probs=77.8
Q ss_pred HHhhcCCCCCCCccEEEEEecccccC---C---HH--HHHHHHHHHHH-cCCEEEEEecCCCCcchHHHHHHHHHcCCCC
Q 043397 394 IQKGLGLKSEGTVPLVVCITRLVAQK---G---LH--LITHAIKRAEE-LGGQMILLGNSPVHWVQKDFEDLANLHNKGT 464 (596)
Q Consensus 394 ~~~~l~l~~~~~~~~il~iGrl~~~K---G---i~--~ll~A~~~l~~-~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~ 464 (596)
.+..+.++ .++++|+|.-...+.. | .. .-++.+.+... .+..+++-=. ....+.+.. ..+ ..+
T Consensus 198 ~~~~~~~~--~~k~vIlyaPTfr~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~k~H---p~is~~~~~-~~~--~~~ 269 (388)
T COG1887 198 IQLALPLP--QDKKVILYAPTFRDNDVLIGTQFFNLDIDIEKLKEKLGENEYVIIVKPH---PLISDKIDK-RYA--LDD 269 (388)
T ss_pred HhhhcCCc--ccCceEEecCCccCCccccchhhhhhhhhHHHHHHhhccCCeEEEEecC---hhhhhhhhh-hhh--ccc
Confidence 45555555 6789999988776664 2 22 22333333322 3444444333 111111111 101 122
Q ss_pred cEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC-----ccccccccCCCCCCCccceEEE
Q 043397 465 STRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG-----LADTVFDVDDPSNHEKANGFVF 539 (596)
Q Consensus 465 ~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg-----~~e~i~~~~~~~~~~~~~G~lv 539 (596)
.+..+.. ..++..+|..+|++|- .++.+..|+|..-+|+|-....+ .+....|+.. ..-|-++
T Consensus 270 ~~~~vs~--~~di~dll~~sDiLIT-----DySSv~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~-----~~Pg~~~ 337 (388)
T COG1887 270 FVLDVSD--NADINDLLLVSDILIT-----DYSSVIFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKF-----EAPGEVV 337 (388)
T ss_pred eeEeccc--chhHHHHHhhhCEEEe-----echHHHHHHHHhcCcEEEEecChHHHHhhhhhhhhHHh-----cCCcccc
Confidence 1222222 4779999999999994 47889999999999999842211 1122222110 1345555
Q ss_pred eCCCHHHHHHHHHHHHH
Q 043397 540 EGIDEGSLNWALDRAFR 556 (596)
Q Consensus 540 ~~~d~~~la~~i~~ll~ 556 (596)
+ +..++.++|.....
T Consensus 338 ~--~~~~li~ai~~~~~ 352 (388)
T COG1887 338 E--TQEELIDAIKPYDE 352 (388)
T ss_pred c--cHHHHHHHHHhhhc
Confidence 4 67788888887776
No 221
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=57.07 E-value=17 Score=32.43 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=29.1
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
|||++|+....+ .|-...++..+++.+.+.|++|.++-.
T Consensus 1 Mkilii~gS~r~---~~~t~~l~~~~~~~l~~~g~e~~~i~l 39 (152)
T PF03358_consen 1 MKILIINGSPRK---NSNTRKLAEAVAEQLEEAGAEVEVIDL 39 (152)
T ss_dssp -EEEEEESSSST---TSHHHHHHHHHHHHHHHTTEEEEEEEC
T ss_pred CEEEEEECcCCC---CCHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 899999866532 355567777788888888999999964
No 222
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=57.06 E-value=17 Score=33.01 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=26.6
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
.||+++ || |.++...++.|.+.|++|+|+.|.
T Consensus 14 ~~vlVv----------GG-G~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 14 KVVVII----------GG-GKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CEEEEE----------CC-CHHHHHHHHHHHhCCCEEEEEcCc
Confidence 467776 55 788889999999999999999754
No 223
>PLN00016 RNA-binding protein; Provisional
Probab=56.11 E-value=12 Score=39.33 Aligned_cols=41 Identities=17% Similarity=0.223 Sum_probs=30.7
Q ss_pred CCCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 105 DSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 105 ~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
...+||||+++.. .||.+..-..|++.|.++||+|++++..
T Consensus 49 ~~~~~~VLVt~~~------~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 49 AVEKKKVLIVNTN------SGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred ccccceEEEEecc------CCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 3445788877432 2666777778999999999999999854
No 224
>CHL00194 ycf39 Ycf39; Provisional
Probab=55.43 E-value=15 Score=37.44 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=27.2
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
|||+++ ||.|..-..++++|.++||+|.+++..
T Consensus 1 MkIlVt----------GatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 1 MSLLVI----------GATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CEEEEE----------CCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 677765 777777788999999999999999743
No 225
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=54.84 E-value=2e+02 Score=28.61 Aligned_cols=103 Identities=13% Similarity=0.040 Sum_probs=66.5
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEec--------CCCCcc---hHHHHHHHHHcCCCCcEEEEeccCHH
Q 043397 407 PLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGN--------SPVHWV---QKDFEDLANLHNKGTSTRILLMYSEE 475 (596)
Q Consensus 407 ~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~--------~~~g~~---~~~l~~~~~~~~~~~~V~~~g~~~~~ 475 (596)
..++.+| ...-...+.+++.++++++.+.+++..|. ...|.. ...+++.++++|+. .+....+.+
T Consensus 27 ~~~~iaG-PCsie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~---~~te~~d~~ 102 (266)
T PRK13398 27 EKIIIAG-PCAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLP---VVTEVMDTR 102 (266)
T ss_pred CEEEEEe-CCcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCC---EEEeeCChh
Confidence 4444444 44455788999999999888888888882 112222 34455666677663 444555655
Q ss_pred HHHHHHHhCCEEEEcCCC-CCCchHHHHHHhcCCceEEeC
Q 043397 476 LSHMLYAAADIVLVPSIY-EPCGLAQMIGMRYGAVPVVRK 514 (596)
Q Consensus 476 ~l~~~~a~aDi~l~PS~~-E~~gl~~lEAma~G~pvI~s~ 514 (596)
.+..+...+|++-++|+. +.+++ +-++-..|+||+.++
T Consensus 103 ~~~~l~~~vd~~kIga~~~~n~~L-L~~~a~~gkPV~lk~ 141 (266)
T PRK13398 103 DVEEVADYADMLQIGSRNMQNFEL-LKEVGKTKKPILLKR 141 (266)
T ss_pred hHHHHHHhCCEEEECcccccCHHH-HHHHhcCCCcEEEeC
Confidence 566666669999999975 55332 334456799999864
No 226
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=54.35 E-value=1.7e+02 Score=26.58 Aligned_cols=76 Identities=13% Similarity=0.123 Sum_probs=50.3
Q ss_pred CHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHhcCCceEE-eCCCCcc---ccccccCCCCCCCccceEEEeCCCHH
Q 043397 473 SEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMRYGAVPVV-RKTGGLA---DTVFDVDDPSNHEKANGFVFEGIDEG 545 (596)
Q Consensus 473 ~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma~G~pvI~-s~~gg~~---e~i~~~~~~~~~~~~~G~lv~~~d~~ 545 (596)
+.++....+. ..|++++-... +.-|..+++.+....|+|+ +...... +.+.. |..|++..|.+.+
T Consensus 35 ~~~~~l~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~vi~~s~~~~~~~~~~~~~~--------ga~~~i~kp~~~~ 106 (196)
T PRK10360 35 SGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSVHDSPALVEQALNA--------GARGFLSKRCSPD 106 (196)
T ss_pred CHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHccCCCEEEEECCCCHHHHHHHHHc--------CCcEEEECCCCHH
Confidence 3344444443 45888876543 4457777777777778776 3433322 22333 6789999999999
Q ss_pred HHHHHHHHHHH
Q 043397 546 SLNWALDRAFR 556 (596)
Q Consensus 546 ~la~~i~~ll~ 556 (596)
++.++|..++.
T Consensus 107 ~l~~~i~~~~~ 117 (196)
T PRK10360 107 ELIAAVHTVAT 117 (196)
T ss_pred HHHHHHHHHHc
Confidence 99999998875
No 227
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=54.19 E-value=18 Score=38.96 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=30.5
Q ss_pred CCCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 105 DSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 105 ~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
.++.|||++. ||.|-.-..|++.|.++||+|.++..
T Consensus 117 ~~~~mkILVT----------GatGFIGs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 117 GRKRLRIVVT----------GGAGFVGSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred ccCCCEEEEE----------CCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 4566998876 88888888999999999999998863
No 228
>PLN02778 3,5-epimerase/4-reductase
Probab=53.20 E-value=19 Score=36.38 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=27.0
Q ss_pred CCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEE
Q 043397 106 SNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIM 148 (596)
Q Consensus 106 ~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi 148 (596)
..+||||+. ||.|-.=..|++.|.++||+|++.
T Consensus 7 ~~~~kiLVt----------G~tGfiG~~l~~~L~~~g~~V~~~ 39 (298)
T PLN02778 7 SATLKFLIY----------GKTGWIGGLLGKLCQEQGIDFHYG 39 (298)
T ss_pred CCCCeEEEE----------CCCCHHHHHHHHHHHhCCCEEEEe
Confidence 345898876 777888889999999999999754
No 229
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=53.18 E-value=22 Score=35.06 Aligned_cols=41 Identities=20% Similarity=0.193 Sum_probs=28.8
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccch
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECI 155 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~ 155 (596)
++||||+....-.. +.-...|+++|.+.| +|.|++|..++.
T Consensus 4 ~~M~ILltNDDGi~-------a~Gi~aL~~~l~~~g-~V~VvAP~~~~S 44 (257)
T PRK13932 4 KKPHILVCNDDGIE-------GEGIHVLAASMKKIG-RVTVVAPAEPHS 44 (257)
T ss_pred CCCEEEEECCCCCC-------CHHHHHHHHHHHhCC-CEEEEcCCCCCC
Confidence 56999977543321 345567888888888 899999875543
No 230
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=52.32 E-value=1.2e+02 Score=32.86 Aligned_cols=86 Identities=14% Similarity=0.072 Sum_probs=54.6
Q ss_pred HHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEE-eCC--CCccccccccCCCCCCCccceEEEeCCCHHHHHHH
Q 043397 474 EELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVV-RKT--GGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWA 550 (596)
Q Consensus 474 ~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~-s~~--gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~ 550 (596)
...+.+.++.+-..+.|.=.+...-.++||+.+||.||. ++. ..+.++++- ..-++.+. .+++-+.
T Consensus 334 ~~~y~~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~--------~~fSV~v~---~~~v~~~ 402 (464)
T KOG1021|consen 334 PLNYMEGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDW--------TEFSVFVP---EKDVPEL 402 (464)
T ss_pred cchHHHHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCCcccCcCCCccc--------eEEEEEEE---HHHhhhH
Confidence 345778999999999999999888899999999997776 443 123333322 34555554 3344333
Q ss_pred HHHHHHhccCCHHHHHHHHHHH
Q 043397 551 LDRAFRHFIDKPEEWNRIVQKI 572 (596)
Q Consensus 551 i~~ll~~~~~~~~~~~~~~~~~ 572 (596)
|.++|... ...++..|.++.
T Consensus 403 ~~~iL~~i--~~~~~~~m~~~v 422 (464)
T KOG1021|consen 403 IKNILLSI--PEEEVLRMRENV 422 (464)
T ss_pred HHHHHHhc--CHHHHHHHHHHH
Confidence 55555533 334445555443
No 231
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=52.22 E-value=33 Score=26.78 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=22.7
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEeccc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPFY 152 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~~ 152 (596)
|| +....++|..|.+.|.+|+++....
T Consensus 6 Gg-G~ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 6 GG-GFIGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp SS-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred Cc-CHHHHHHHHHHHHhCcEEEEEeccc
Confidence 44 6777899999999999999998543
No 232
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=52.22 E-value=2e+02 Score=27.84 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=56.3
Q ss_pred HHHHHHHHh-CCEEEEcCCC-CCCchHHHHHHh----cCCceEE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHH
Q 043397 475 ELSHMLYAA-ADIVLVPSIY-EPCGLAQMIGMR----YGAVPVV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSL 547 (596)
Q Consensus 475 ~~l~~~~a~-aDi~l~PS~~-E~~gl~~lEAma----~G~pvI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~l 547 (596)
++....... .|++++--.. ..-|+.++.-+. ...|+|. |..+...+.+.-.+. |.+.|+..|.++.+|
T Consensus 34 ~~a~~~~~~~~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~Lta~~~~~d~v~gl~~-----GADDYl~KPf~~~EL 108 (229)
T COG0745 34 EEALEAAREQPDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIVLTARDDEEDRVLGLEA-----GADDYLTKPFSPREL 108 (229)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEEEECCCcHHHHHHHHhC-----cCCeeeeCCCCHHHH
Confidence 444445443 8888875543 455666666565 5666666 777778887766544 778999999999999
Q ss_pred HHHHHHHHHh
Q 043397 548 NWALDRAFRH 557 (596)
Q Consensus 548 a~~i~~ll~~ 557 (596)
...|+.++..
T Consensus 109 ~ARi~a~lRR 118 (229)
T COG0745 109 LARLRALLRR 118 (229)
T ss_pred HHHHHHHHCc
Confidence 9999999874
No 233
>PRK04155 chaperone protein HchA; Provisional
Probab=52.06 E-value=42 Score=33.83 Aligned_cols=44 Identities=16% Similarity=0.002 Sum_probs=26.7
Q ss_pred eeEEEEeeccccccc-c-----cCHHHH-HhHHHHHHHhcCCeEEEEeccc
Q 043397 109 MHIIHITAEMAPIAK-V-----GGLGDV-VTGLARACLSRGHTVDIMLPFY 152 (596)
Q Consensus 109 mkIl~is~~~~P~~~-~-----GG~~~~-~~~La~aL~~~Gh~V~vi~p~~ 152 (596)
+|||+|.+...-... . .|.... +..-...|.+.|++|+++++..
T Consensus 50 kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G 100 (287)
T PRK04155 50 KKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSG 100 (287)
T ss_pred CeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 499999887643210 1 222211 2223567788999999999753
No 234
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=51.04 E-value=22 Score=35.16 Aligned_cols=120 Identities=15% Similarity=-0.018 Sum_probs=66.5
Q ss_pred ccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCC-cE-EEEeccCHHHHHHHHHh
Q 043397 406 VPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGT-ST-RILLMYSEELSHMLYAA 483 (596)
Q Consensus 406 ~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~-~V-~~~g~~~~~~l~~~~a~ 483 (596)
..+++.+|+ |.+..+... .....+.+.+. . ..+.++ .+.++|+.+ ++ -..|..+.+.=..+++.
T Consensus 130 ~~i~lttG~----k~l~~f~~~---~~~~~~~~RvL-P-----~~~~l~-~~~~~G~~~~~iia~~gPfs~e~n~al~~~ 195 (256)
T TIGR00715 130 KRVFLTAGA----SWLSHFSLS---QDEAVVFVRVL-P-----YPQALA-QALKLGFPSDRIIAMRGPFSEELEKALLRE 195 (256)
T ss_pred CcEEEecCc----chHHHHhhc---cCCceEEEEEC-C-----CchhhH-HHHHcCCChhcEEEEeCCCCHHHHHHHHHH
Confidence 356777774 566665432 11112233333 2 223333 444555533 44 44488887777788877
Q ss_pred CCEEEEcCCC--C--CCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHH
Q 043397 484 ADIVLVPSIY--E--PCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAF 555 (596)
Q Consensus 484 aDi~l~PS~~--E--~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll 555 (596)
..+-++-+.. + ++--++--|+.+|+|||.-+.+-++.- +-.+ .|.+++.+.+.+++
T Consensus 196 ~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~~~~--------------~~~~--~~~~el~~~l~~~~ 255 (256)
T TIGR00715 196 YRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQTIPG--------------VAIF--DDISQLNQFVARLL 255 (256)
T ss_pred cCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCCCCC--------------CccC--CCHHHHHHHHHHhc
Confidence 6665444443 2 334567788999999999776643211 1122 26777777776543
No 235
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=50.13 E-value=22 Score=37.23 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=28.6
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
..|||+++ ||.|..-..+++.|.++||+|+.+.
T Consensus 20 ~~~~IlVt----------GgtGfIG~~l~~~L~~~G~~V~~v~ 52 (370)
T PLN02695 20 EKLRICIT----------GAGGFIASHIARRLKAEGHYIIASD 52 (370)
T ss_pred CCCEEEEE----------CCccHHHHHHHHHHHhCCCEEEEEE
Confidence 45899866 7778888899999999999999886
No 236
>PRK06756 flavodoxin; Provisional
Probab=50.02 E-value=30 Score=30.77 Aligned_cols=37 Identities=11% Similarity=0.229 Sum_probs=29.9
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
+|||+++-.. ..|..+.++..+++.+.+.|++|.++-
T Consensus 1 mmkv~IiY~S-----~tGnTe~vA~~ia~~l~~~g~~v~~~~ 37 (148)
T PRK06756 1 MSKLVMIFAS-----MSGNTEEMADHIAGVIRETENEIEVID 37 (148)
T ss_pred CceEEEEEEC-----CCchHHHHHHHHHHHHhhcCCeEEEee
Confidence 4788877422 458999999999999999999998764
No 237
>PRK09271 flavodoxin; Provisional
Probab=49.51 E-value=31 Score=31.33 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=29.3
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
|||+++-.. ..|-.+.++..+++.|...|++|.+.-
T Consensus 1 mkv~IvY~S-----~tGnTe~~A~~ia~~l~~~g~~v~~~~ 36 (160)
T PRK09271 1 MRILLAYAS-----LSGNTREVAREIEERCEEAGHEVDWVE 36 (160)
T ss_pred CeEEEEEEc-----CCchHHHHHHHHHHHHHhCCCeeEEEe
Confidence 788777433 458889999999999999999987653
No 238
>PRK06849 hypothetical protein; Provisional
Probab=48.60 E-value=25 Score=37.09 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=28.1
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
++|+||++ ||-......++++|.++||+|.++...
T Consensus 3 ~~~~VLI~----------G~~~~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 3 TKKTVLIT----------GARAPAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCCEEEEe----------CCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46899987 444456789999999999999999754
No 239
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=48.43 E-value=22 Score=34.44 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=22.6
Q ss_pred CHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 126 GLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 126 G~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
|.+++-..+|+.|.+.||+|.++-..
T Consensus 7 G~G~vG~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 7 GAGRVGRSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred CCcHHHHHHHHHHHhCCCceEEEEcC
Confidence 45888899999999999999999643
No 240
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=48.40 E-value=80 Score=29.28 Aligned_cols=100 Identities=19% Similarity=0.027 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHH---HHHH--HhCCEEEEcC---
Q 043397 420 GLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELS---HMLY--AAADIVLVPS--- 491 (596)
Q Consensus 420 Gi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l---~~~~--a~aDi~l~PS--- 491 (596)
|.|++.+.++...+.+.++.++|. ..+...+..+.+.++++...-+-..|+.++++- .+.+ +.+|++++--
T Consensus 33 G~dl~~~l~~~~~~~~~~vfllG~-~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~VglG~P 111 (177)
T TIGR00696 33 GPDLMEELCQRAGKEKLPIFLYGG-KPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVFVGLGCP 111 (177)
T ss_pred hHHHHHHHHHHHHHcCCeEEEECC-CHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 889999999888777889999998 222222333444445432111222356654432 3333 3458877642
Q ss_pred CCCCCchHHHHHHhcCCceEEeCCCCcccccc
Q 043397 492 IYEPCGLAQMIGMRYGAVPVVRKTGGLADTVF 523 (596)
Q Consensus 492 ~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~ 523 (596)
+.|-+-..... .... .|.-.+||.-|...
T Consensus 112 kQE~~~~~~~~--~~~~-~v~~gvGg~fd~~a 140 (177)
T TIGR00696 112 KQEIWMRNHRH--LKPD-AVMIGVGGSFDVFS 140 (177)
T ss_pred HhHHHHHHhHH--hCCC-cEEEEeceeeeecc
Confidence 23433222111 1222 34444788777763
No 241
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=47.95 E-value=28 Score=31.67 Aligned_cols=31 Identities=32% Similarity=0.472 Sum_probs=24.4
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
+|||.|| |++.+-..+++.|.+.||+|.++-
T Consensus 1 m~~Ig~I-----------GlG~mG~~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 1 MMKIGFI-----------GLGNMGSAMARNLAKAGYEVTVYD 31 (163)
T ss_dssp -BEEEEE-------------SHHHHHHHHHHHHTTTEEEEEE
T ss_pred CCEEEEE-----------chHHHHHHHHHHHHhcCCeEEeec
Confidence 4778887 457777899999999999999875
No 242
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.38 E-value=3.7e+02 Score=28.38 Aligned_cols=172 Identities=9% Similarity=0.089 Sum_probs=101.0
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCC-C---cchHHHHHHHHHcCCCCcEEEEe--cc---CHHHH
Q 043397 407 PLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPV-H---WVQKDFEDLANLHNKGTSTRILL--MY---SEELS 477 (596)
Q Consensus 407 ~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~-g---~~~~~l~~~~~~~~~~~~V~~~g--~~---~~~~l 477 (596)
..+=|.|+....+=+....+.+++.+++++.++|+-.++- . ...+++.+..+..+ .++|.|.= .+ -.++.
T Consensus 155 ~~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~-Pd~vi~VmDasiGQaae~Qa 233 (483)
T KOG0780|consen 155 ARVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIK-PDEIIFVMDASIGQAAEAQA 233 (483)
T ss_pred hCCeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcC-CCeEEEEEeccccHhHHHHH
Confidence 3445667888888899999999999999999999976421 1 23344444444443 34566652 22 23344
Q ss_pred HHHHHhCCEE--EEcCCC----CCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHH
Q 043397 478 HMLYAAADIV--LVPSIY----EPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWAL 551 (596)
Q Consensus 478 ~~~~a~aDi~--l~PS~~----E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i 551 (596)
..+=...|+. +++-.. -+..++..+ +.++|+|--.+|-.-|-++..++. .=-+-+.--+|.+.|.+.+
T Consensus 234 ~aFk~~vdvg~vIlTKlDGhakGGgAlSaVa--aTksPIiFIGtGEhmdDlE~F~pk----~FvsrlLGmGDi~glvek~ 307 (483)
T KOG0780|consen 234 RAFKETVDVGAVILTKLDGHAKGGGALSAVA--ATKSPIIFIGTGEHMDDLEPFDPK----PFVSRLLGMGDIEGLVEKV 307 (483)
T ss_pred HHHHHhhccceEEEEecccCCCCCceeeehh--hhCCCEEEEecCccccccCCCChH----HHHHHHhccccHHHHHHHH
Confidence 4444555653 444331 344455555 457788776555433333221110 0012233346889999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043397 552 DRAFRHFIDKPEEWNRIVQKIMENDNSWNNAAGKYMEIYN 591 (596)
Q Consensus 552 ~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~iy~ 591 (596)
.++-.. | -+++.++...-+|+...+.+++-.+.+
T Consensus 308 ~ev~~~---d---~~el~~kl~~gkFtlrd~y~Qfq~imk 341 (483)
T KOG0780|consen 308 QEVGKD---D---AKELVEKLKQGKFTLRDFYDQFQNIMK 341 (483)
T ss_pred HHHhhh---h---HHHHHHHHHhCCccHHHHHHHHHHHHh
Confidence 888731 2 234455555568999998888877654
No 243
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=47.31 E-value=2.3e+02 Score=26.10 Aligned_cols=27 Identities=33% Similarity=0.583 Sum_probs=21.2
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCe
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHT 144 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~ 144 (596)
|||+++. .|.+.....+..++.+.+++
T Consensus 1 mrI~~~~---------Sg~~~~~~~~l~~l~~~~~~ 27 (181)
T PF00551_consen 1 MRIVFFG---------SGSGSFLKALLEALKARGHN 27 (181)
T ss_dssp EEEEEEE---------SSSSHHHHHHHHHHHTTSSE
T ss_pred CEEEEEE---------cCCCHHHHHHHHHHHhCCCC
Confidence 8999985 22356777888999999998
No 244
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=46.85 E-value=11 Score=41.23 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=21.5
Q ss_pred CHHHHHhHHHHHHHhcCCeEEEEeccc
Q 043397 126 GLGDVVTGLARACLSRGHTVDIMLPFY 152 (596)
Q Consensus 126 G~~~~~~~La~aL~~~Gh~V~vi~p~~ 152 (596)
.--.....++++|+++||+|++++|..
T Consensus 11 SH~~~~~~l~~~L~~rGH~VTvl~~~~ 37 (500)
T PF00201_consen 11 SHFIFMRPLAEELAERGHNVTVLTPSP 37 (500)
T ss_dssp -SHHHHHHHHHHHHHH-TTSEEEHHHH
T ss_pred CHHHHHHHHHHHHHhcCCceEEEEeec
Confidence 336677889999999999999999764
No 245
>PRK10867 signal recognition particle protein; Provisional
Probab=46.75 E-value=4e+02 Score=28.64 Aligned_cols=97 Identities=13% Similarity=0.057 Sum_probs=57.4
Q ss_pred CEEEEcCCCC--CCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCH
Q 043397 485 DIVLVPSIYE--PCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKP 562 (596)
Q Consensus 485 Di~l~PS~~E--~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~ 562 (596)
+-+|++-..+ -.|..+--+...|+|+.-..+|---+-++..++ +.-...+..-+|..+|.+.+++.+ +.
T Consensus 243 ~giIlTKlD~~~rgG~alsi~~~~~~PI~fig~Ge~v~DLe~f~p----~~~~~~ilgmgD~~~l~e~~~~~~-----~~ 313 (433)
T PRK10867 243 TGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHP----DRMASRILGMGDVLSLIEKAQEVV-----DE 313 (433)
T ss_pred CEEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCccccCccCCH----HHHHHHHhCCCChHHHHHHHHHhh-----CH
Confidence 3344444332 355566666788998887666531122222110 011223344568888888887776 34
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043397 563 EEWNRIVQKIMENDNSWNNAAGKYMEIY 590 (596)
Q Consensus 563 ~~~~~~~~~~~~~~fs~~~~~~~~~~iy 590 (596)
+..+++.++....+|+.+.+.+++.++-
T Consensus 314 ~~~~~~~~~~~~g~f~l~d~~~q~~~~~ 341 (433)
T PRK10867 314 EKAEKLAKKLKKGKFDLEDFLEQLQQMK 341 (433)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4456666666667899999998887764
No 246
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=46.50 E-value=34 Score=33.44 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=25.5
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
++|+|+++ |+.+..-..+++.|.+.||+|++++.
T Consensus 16 ~~~~ilIt----------GasG~iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 16 KTKTVFVA----------GATGRTGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred cCCeEEEE----------CCCcHHHHHHHHHHHhCCCEEEEEec
Confidence 35778776 54455556788889999999988863
No 247
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=45.81 E-value=1e+02 Score=26.86 Aligned_cols=71 Identities=15% Similarity=0.137 Sum_probs=39.1
Q ss_pred HHHHHHhCCEEEEcC--CCC--CCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHH
Q 043397 477 SHMLYAAADIVLVPS--IYE--PCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALD 552 (596)
Q Consensus 477 l~~~~a~aDi~l~PS--~~E--~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~ 552 (596)
-..++..||++|+-- .|- +-.+-.-=|.|.|+|.|.-.-..+..-+.+.+ ..-.+-..++++..+.|.
T Consensus 66 T~~li~~aDvVVvrFGekYKQWNaAfDAg~a~AlgKplI~lh~~~~~HpLKEvd--------a~A~a~~et~~Qvv~iL~ 137 (141)
T PF11071_consen 66 TRTLIEKADVVVVRFGEKYKQWNAAFDAGYAAALGKPLITLHPEELHHPLKEVD--------AAALAVAETPEQVVEILR 137 (141)
T ss_pred HHHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhccccHHHHh--------HhhHhhhCCHHHHHHHHH
Confidence 467889999998641 111 11112234578999999865555444444422 111222236777777766
Q ss_pred HHH
Q 043397 553 RAF 555 (596)
Q Consensus 553 ~ll 555 (596)
.++
T Consensus 138 Yv~ 140 (141)
T PF11071_consen 138 YVL 140 (141)
T ss_pred HHh
Confidence 654
No 248
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=45.72 E-value=41 Score=35.59 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=28.1
Q ss_pred CCCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 105 DSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 105 ~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
....|||+++ ||.+..-..++++|.++||+|.++...
T Consensus 57 ~~~~~kVLVt----------GatG~IG~~l~~~Ll~~G~~V~~l~R~ 93 (390)
T PLN02657 57 EPKDVTVLVV----------GATGYIGKFVVRELVRRGYNVVAVARE 93 (390)
T ss_pred CCCCCEEEEE----------CCCcHHHHHHHHHHHHCCCEEEEEEec
Confidence 3445788766 666666678899999999999988743
No 249
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=45.22 E-value=70 Score=29.51 Aligned_cols=100 Identities=22% Similarity=0.304 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh-----CCEEEEcCCCCC
Q 043397 421 LHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA-----ADIVLVPSIYEP 495 (596)
Q Consensus 421 i~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~-----aDi~l~PS~~E~ 495 (596)
...+++|+.+.++.+-+.-++|. ......+..+.+-++. ++.+.-+-+.+++...+.. +|+++ |
T Consensus 63 ~~Dil~al~~a~~~~~~Iavv~~---~~~~~~~~~~~~ll~~--~i~~~~~~~~~e~~~~i~~~~~~G~~viV------G 131 (176)
T PF06506_consen 63 GFDILRALAKAKKYGPKIAVVGY---PNIIPGLESIEELLGV--DIKIYPYDSEEEIEAAIKQAKAEGVDVIV------G 131 (176)
T ss_dssp HHHHHHHHHHCCCCTSEEEEEEE---SS-SCCHHHHHHHHT---EEEEEEESSHHHHHHHHHHHHHTT--EEE------E
T ss_pred HhHHHHHHHHHHhcCCcEEEEec---ccccHHHHHHHHHhCC--ceEEEEECCHHHHHHHHHHHHHcCCcEEE------C
Confidence 34678888877665668888887 4444445555555655 5777777777777766654 46666 4
Q ss_pred CchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhc
Q 043397 496 CGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHF 558 (596)
Q Consensus 496 ~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~ 558 (596)
.+.+.--|-.+|. .++++.. ..+++..+|.+++...
T Consensus 132 g~~~~~~A~~~gl--------------------------~~v~i~s-g~esi~~Al~eA~~i~ 167 (176)
T PF06506_consen 132 GGVVCRLARKLGL--------------------------PGVLIES-GEESIRRALEEALRIA 167 (176)
T ss_dssp SHHHHHHHHHTTS--------------------------EEEESS---HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCC--------------------------cEEEEEe-cHHHHHHHHHHHHHHH
Confidence 4444444555554 3444443 6788999998888643
No 250
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=45.04 E-value=2.8e+02 Score=26.32 Aligned_cols=114 Identities=11% Similarity=0.128 Sum_probs=60.8
Q ss_pred EEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCc-ch-HHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCE
Q 043397 409 VVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHW-VQ-KDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADI 486 (596)
Q Consensus 409 il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~-~~-~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi 486 (596)
|+-+|++...-=++++++- +..++++.+.++|+ |. +. +..+....+ .+.+ -..|+
T Consensus 7 ~ik~GniGts~v~dlllDE--rAdRedi~vrVvgs---gaKM~Pe~veaav~~----------------~~e~--~~pDf 63 (277)
T COG1927 7 FIKCGNIGTSPVVDLLLDE--RADREDIEVRVVGS---GAKMDPECVEAAVTE----------------MLEE--FNPDF 63 (277)
T ss_pred EEEecccchHHHHHHHHHh--hcccCCceEEEecc---ccccChHHHHHHHHH----------------HHHh--cCCCE
Confidence 4556766544444444442 22337899999998 52 11 222222111 0111 12344
Q ss_pred EE--EcCCCCCCchHHHHHHh-cCCceEE-eCCCC--ccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHH
Q 043397 487 VL--VPSIYEPCGLAQMIGMR-YGAVPVV-RKTGG--LADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAF 555 (596)
Q Consensus 487 ~l--~PS~~E~~gl~~lEAma-~G~pvI~-s~~gg--~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll 555 (596)
++ .|..--+.|-..-|.++ .|.|.|. +|.+| ..|-+++ .+-|+++-. .+.+..+=+++|
T Consensus 64 vi~isPNpaaPGP~kARE~l~~s~~PaiiigDaPg~~vkdelee--------qGlGYIivk--~DpmiGArREFL 128 (277)
T COG1927 64 VIYISPNPAAPGPKKAREILSDSDVPAIIIGDAPGLKVKDELEE--------QGLGYIIVK--ADPMIGARREFL 128 (277)
T ss_pred EEEeCCCCCCCCchHHHHHHhhcCCCEEEecCCccchhHHHHHh--------cCCeEEEec--CCcccchhhhhc
Confidence 33 34445666777777765 5788776 77777 4555655 577887754 334444444444
No 251
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=44.91 E-value=2.9e+02 Score=28.69 Aligned_cols=105 Identities=12% Similarity=0.072 Sum_probs=69.5
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCC--------CCc---chHHHHHHHHHcCCCCcEEEEeccC
Q 043397 405 TVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSP--------VHW---VQKDFEDLANLHNKGTSTRILLMYS 473 (596)
Q Consensus 405 ~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~--------~g~---~~~~l~~~~~~~~~~~~V~~~g~~~ 473 (596)
+++.++.+| -+.-..-+.+++.++.+++.+.+++-.|.-. .|. -.+.+.+..++.|+ -.+..-.+
T Consensus 99 ~~~l~vIAG-PCsIEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl---~~~tev~d 174 (352)
T PRK13396 99 NHPVVVVAG-PCSVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGL---GIITEVMD 174 (352)
T ss_pred CCeEEEEEe-CCcccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCC---cEEEeeCC
Confidence 445556666 4456677889999999988788877765410 121 23445555667665 35556667
Q ss_pred HHHHHHHHHhCCEEEEcCCC-CCCchHHHHHHhcCCceEEeC
Q 043397 474 EELSHMLYAAADIVLVPSIY-EPCGLAQMIGMRYGAVPVVRK 514 (596)
Q Consensus 474 ~~~l~~~~a~aDi~l~PS~~-E~~gl~~lEAma~G~pvI~s~ 514 (596)
.+++..+...+|++-++|+. .++.+ +-++-..|+||+.+.
T Consensus 175 ~~~v~~~~~~~d~lqIga~~~~n~~L-L~~va~t~kPVllk~ 215 (352)
T PRK13396 175 AADLEKIAEVADVIQVGARNMQNFSL-LKKVGAQDKPVLLKR 215 (352)
T ss_pred HHHHHHHHhhCCeEEECcccccCHHH-HHHHHccCCeEEEeC
Confidence 77777777779999999975 55544 334457899999864
No 252
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=44.87 E-value=2.1e+02 Score=28.02 Aligned_cols=38 Identities=24% Similarity=0.139 Sum_probs=26.8
Q ss_pred CCEEEEc-CCCCCCchHHHHHHhcCCceEE-eCCCCcccccc
Q 043397 484 ADIVLVP-SIYEPCGLAQMIGMRYGAVPVV-RKTGGLADTVF 523 (596)
Q Consensus 484 aDi~l~P-S~~E~~gl~~lEAma~G~pvI~-s~~gg~~e~i~ 523 (596)
-|++++. ...| -.++.||--.|+|||+ .|+-.-++.|.
T Consensus 157 Pd~l~ViDp~~e--~iAv~EA~klgIPVvAlvDTn~dpd~VD 196 (252)
T COG0052 157 PDVLFVIDPRKE--KIAVKEANKLGIPVVALVDTNCDPDGVD 196 (252)
T ss_pred CCEEEEeCCcHh--HHHHHHHHHcCCCEEEEecCCCCCccCc
Confidence 3554433 3344 3689999999999999 57777777763
No 253
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=44.86 E-value=31 Score=35.19 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=26.2
Q ss_pred CCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 106 SNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 106 ~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
..+|||+++. .|++|. .+|..|++.||+|+++...
T Consensus 3 ~~~m~I~IiG--------~GaiG~---~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 3 SETPRIGIIG--------TGAIGG---FYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CcCcEEEEEC--------CCHHHH---HHHHHHHHCCCeEEEEEeC
Confidence 3569999983 355554 6778888899999999854
No 254
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=44.85 E-value=2.2e+02 Score=30.87 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=70.2
Q ss_pred EEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhC--CEEEEcCC-CCCCchHHHHHHhc---CCce
Q 043397 437 QMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAA--DIVLVPSI-YEPCGLAQMIGMRY---GAVP 510 (596)
Q Consensus 437 ~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~a--Di~l~PS~-~E~~gl~~lEAma~---G~pv 510 (596)
+++|+-+ |......++......| ......-+-++....+... |++++-.+ -+.-|+.+++.+.. ++||
T Consensus 6 ~iLvVDD--d~~ir~~l~~~L~~~G----~~v~~a~~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pV 79 (464)
T COG2204 6 RILVVDD--DPDIRELLEQALELAG----YEVVTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPV 79 (464)
T ss_pred CEEEEeC--CHHHHHHHHHHHHHcC----CeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCCE
Confidence 4556655 1233344444444433 3333444444456666555 56665443 36678888877655 6899
Q ss_pred EE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 511 VV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 511 I~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
|. |..|.+...|+-... |...|+..|.|++.|...+.+++..
T Consensus 80 I~~Tg~g~i~~AV~A~k~-----GA~Dfl~KP~~~~~L~~~v~ral~~ 122 (464)
T COG2204 80 IVMTGHGDIDTAVEALRL-----GAFDFLEKPFDLDRLLAIVERALEL 122 (464)
T ss_pred EEEeCCCCHHHHHHHHhc-----CcceeeeCCCCHHHHHHHHHHHHHH
Confidence 88 777776666654322 7788999999999999999999983
No 255
>PRK09739 hypothetical protein; Provisional
Probab=44.43 E-value=46 Score=31.37 Aligned_cols=39 Identities=21% Similarity=0.179 Sum_probs=28.3
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
+|||++|...-.+ .|=....+..+++++.+.||+|+++-
T Consensus 3 mmkiliI~~sp~~---~s~s~~l~~~~~~~~~~~g~~v~~~d 41 (199)
T PRK09739 3 SMRIYLVWAHPRH---DSLTAKVAEAIHQRAQERGHQVEELD 41 (199)
T ss_pred CceEEEEEcCCCC---CCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 6899999765422 23345667777888888999999874
No 256
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=43.95 E-value=37 Score=30.43 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=30.5
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
+|||+++-.. .+|..+.++..++..|.+.|++|.+..
T Consensus 1 M~ki~Ivy~S-----~tGnTe~vA~~i~~~l~~~~~~~~~~~ 37 (151)
T COG0716 1 MMKILIVYGS-----RTGNTEKVAEIIAEELGADGFEVDIDI 37 (151)
T ss_pred CCeEEEEEEc-----CCCcHHHHHHHHHHHhccCCceEEEee
Confidence 5788888544 459999999999999999999995554
No 257
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=43.54 E-value=62 Score=31.38 Aligned_cols=77 Identities=21% Similarity=0.162 Sum_probs=44.4
Q ss_pred EEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEE
Q 043397 410 VCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLV 489 (596)
Q Consensus 410 l~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~ 489 (596)
+++--++|.|-.. -++++.+.+.+...+++|++..+...+....+.++.-.-+-|.|.|..+. +-..||.+++
T Consensus 9 ~h~~liDPdK~~~--~~~~~~~~~~gtDai~VGGS~~~~~~d~vv~~ik~~~~lPvilfPg~~~~-----vs~~aDail~ 81 (230)
T PF01884_consen 9 LHATLIDPDKPNP--EEALEAACESGTDAIIVGGSDTGVTLDNVVALIKRVTDLPVILFPGSPSQ-----VSPGADAILF 81 (230)
T ss_dssp -EEEEE-TTSS-H--HHHHHHHHCTT-SEEEEE-STHCHHHHHHHHHHHHHSSS-EEEETSTCCG-------TTSSEEEE
T ss_pred ceEEEECCCCCCc--HHHHHHHHhcCCCEEEECCCCCccchHHHHHHHHhcCCCCEEEeCCChhh-----cCcCCCEEEE
Confidence 5556788888533 24444444567888888873314344555566665544455777677666 4578999999
Q ss_pred cCCC
Q 043397 490 PSIY 493 (596)
Q Consensus 490 PS~~ 493 (596)
||..
T Consensus 82 ~svl 85 (230)
T PF01884_consen 82 PSVL 85 (230)
T ss_dssp EEET
T ss_pred EEEe
Confidence 9864
No 258
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=43.13 E-value=2.1e+02 Score=31.71 Aligned_cols=101 Identities=13% Similarity=-0.009 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHH
Q 043397 423 LITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMI 502 (596)
Q Consensus 423 ~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lE 502 (596)
.+++|+...++..-++-|+|. ......++.+.+-+++. +...-..+.+++...+ .+
T Consensus 95 Dil~al~~a~~~~~~iavv~~---~~~~~~~~~~~~~l~~~--i~~~~~~~~~e~~~~v-------------------~~ 150 (538)
T PRK15424 95 DVMQALARARKLTSSIGVVTY---QETIPALVAFQKTFNLR--IEQRSYVTEEDARGQI-------------------NE 150 (538)
T ss_pred HHHHHHHHHHhcCCcEEEEec---CcccHHHHHHHHHhCCc--eEEEEecCHHHHHHHH-------------------HH
Confidence 478888888665668889998 66667778888777764 7777777777776655 34
Q ss_pred HHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 503 GMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 503 Ama~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
+-+.|+-+|+.+.-......+- +.+|++.. +.+++..++++++..
T Consensus 151 lk~~G~~~vvG~~~~~~~A~~~--------g~~g~~~~--s~e~i~~a~~~A~~~ 195 (538)
T PRK15424 151 LKANGIEAVVGAGLITDLAEEA--------GMTGIFIY--SAATVRQAFEDALDM 195 (538)
T ss_pred HHHCCCCEEEcCchHHHHHHHh--------CCceEEec--CHHHHHHHHHHHHHH
Confidence 4555666666553332222222 46777765 568999999888864
No 259
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=43.11 E-value=39 Score=30.90 Aligned_cols=31 Identities=32% Similarity=0.373 Sum_probs=26.2
Q ss_pred ccCHHHHHhHHHHHHHhcCCeEEEEeccccc
Q 043397 124 VGGLGDVVTGLARACLSRGHTVDIMLPFYEC 154 (596)
Q Consensus 124 ~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~ 154 (596)
.||.+..-..++++|.++||+|++++.....
T Consensus 4 ~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~ 34 (183)
T PF13460_consen 4 FGATGFVGRALAKQLLRRGHEVTALVRSPSK 34 (183)
T ss_dssp ETTTSHHHHHHHHHHHHTTSEEEEEESSGGG
T ss_pred ECCCChHHHHHHHHHHHCCCEEEEEecCchh
Confidence 3777888889999999999999999965443
No 260
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=43.02 E-value=1.3e+02 Score=27.68 Aligned_cols=100 Identities=25% Similarity=0.266 Sum_probs=54.9
Q ss_pred ccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEec----cCHHHHHHHH-----HhCCEE
Q 043397 417 AQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLM----YSEELSHMLY-----AAADIV 487 (596)
Q Consensus 417 ~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~----~~~~~l~~~~-----a~aDi~ 487 (596)
.--|.|++.+.+....+++.++.++|+. ++......+.+.++ .+++.+.|. .+.++...+. +.+|++
T Consensus 30 rv~g~dl~~~l~~~~~~~~~~ifllG~~-~~~~~~~~~~l~~~---yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv 105 (172)
T PF03808_consen 30 RVTGSDLFPDLLRRAEQRGKRIFLLGGS-EEVLEKAAANLRRR---YPGLRIVGYHHGYFDEEEEEAIINRINASGPDIV 105 (172)
T ss_pred ccCHHHHHHHHHHHHHHcCCeEEEEeCC-HHHHHHHHHHHHHH---CCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEE
Confidence 3467888888888887778899889872 12222223344444 345666654 3333444443 445887
Q ss_pred EEcCC---CCCCchHHHHHHhcCCceEEeCCCCcccccc
Q 043397 488 LVPSI---YEPCGLAQMIGMRYGAVPVVRKTGGLADTVF 523 (596)
Q Consensus 488 l~PS~---~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~ 523 (596)
++-.- .|-| +.+-....-..|.-.+||.-+...
T Consensus 106 ~vglG~PkQE~~---~~~~~~~l~~~v~i~vG~~~d~~a 141 (172)
T PF03808_consen 106 FVGLGAPKQERW---IARHRQRLPAGVIIGVGGAFDFLA 141 (172)
T ss_pred EEECCCCHHHHH---HHHHHHHCCCCEEEEECchhhhhc
Confidence 76421 2333 222222222336666777777663
No 261
>PRK07742 phosphate butyryltransferase; Validated
Probab=42.97 E-value=3.7e+02 Score=27.20 Aligned_cols=76 Identities=18% Similarity=0.169 Sum_probs=48.6
Q ss_pred ccEEEEEecccccCCHHHHHHHHHHHHHc-CCEEEEEecCCCCcchHHHHHHHHHcCC--CCcEEEEeccCHHH----HH
Q 043397 406 VPLVVCITRLVAQKGLHLITHAIKRAEEL-GGQMILLGNSPVHWVQKDFEDLANLHNK--GTSTRILLMYSEEL----SH 478 (596)
Q Consensus 406 ~~~il~iGrl~~~KGi~~ll~A~~~l~~~-~~~lvIvG~~~~g~~~~~l~~~~~~~~~--~~~V~~~g~~~~~~----l~ 478 (596)
...|++..-- =+.+++|+....+. .++++++|+ .+.+++.++++++ .+++.++..-+.++ ..
T Consensus 15 ~~ri~~~~~~-----d~~vl~Aa~~a~~e~~~~~iLvG~------~~~I~~~~~~~~l~~~~~~~Ii~~~~~~~s~~~a~ 83 (299)
T PRK07742 15 KKTVAVAVAE-----DEEVIEAVAKAIELQLARFRLYGN------QEKIMGMLQEHGLQTSEHIEIIHAQSSAEAAELAV 83 (299)
T ss_pred CCeEEEeCCC-----CHHHHHHHHHHHHcCCceEEEECC------HHHHHHHHHHCCCCCCCCcEEECCCCHHHHHHHHH
Confidence 3456665531 24667777666664 368999998 5677888888776 44677776644333 24
Q ss_pred HHHH--hCCEEEEcCC
Q 043397 479 MLYA--AADIVLVPSI 492 (596)
Q Consensus 479 ~~~a--~aDi~l~PS~ 492 (596)
.+.+ .+|.++.-..
T Consensus 84 ~lV~~G~aD~lvsG~~ 99 (299)
T PRK07742 84 KAVRNGEADVLMKGNV 99 (299)
T ss_pred HHHHCCCCCEEEECCc
Confidence 4556 8899985433
No 262
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=42.89 E-value=29 Score=35.56 Aligned_cols=31 Identities=29% Similarity=0.419 Sum_probs=24.9
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
|||+++ ||.+..-..+++.|.++||+|.++.
T Consensus 1 m~vlVt----------GatG~iG~~l~~~L~~~g~~V~~~~ 31 (338)
T PRK10675 1 MRVLVT----------GGSGYIGSHTCVQLLQNGHDVVILD 31 (338)
T ss_pred CeEEEE----------CCCChHHHHHHHHHHHCCCeEEEEe
Confidence 677765 6666666789999999999999875
No 263
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=42.84 E-value=1e+02 Score=31.75 Aligned_cols=77 Identities=19% Similarity=0.212 Sum_probs=44.9
Q ss_pred EEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEec------------cCHHHHHHHHHhCCEEEE--cCCCCCCchH---
Q 043397 437 QMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLM------------YSEELSHMLYAAADIVLV--PSIYEPCGLA--- 499 (596)
Q Consensus 437 ~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~------------~~~~~l~~~~a~aDi~l~--PS~~E~~gl~--- 499 (596)
.+-|+|- |..-..+.+.++.+|. +|..... ...+.+.++++.||++++ |...|+-|+.
T Consensus 144 TvGIiG~---G~IG~~va~~l~afgm--~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~ 218 (324)
T COG0111 144 TVGIIGL---GRIGRAVAKRLKAFGM--KVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAE 218 (324)
T ss_pred EEEEECC---CHHHHHHHHHHHhCCC--eEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHH
Confidence 4445555 5444555555554444 2333333 222348899999999864 6667877764
Q ss_pred HHHHHhcCCceEEeCCCCc
Q 043397 500 QMIGMRYGAVPVVRKTGGL 518 (596)
Q Consensus 500 ~lEAma~G~pvI~s~~gg~ 518 (596)
.+..|--|.-.|-+..|++
T Consensus 219 ~~a~MK~gailIN~aRG~v 237 (324)
T COG0111 219 ELAKMKPGAILINAARGGV 237 (324)
T ss_pred HHhhCCCCeEEEECCCcce
Confidence 5666767764554565553
No 264
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=42.79 E-value=4.6e+02 Score=28.16 Aligned_cols=96 Identities=10% Similarity=0.010 Sum_probs=60.2
Q ss_pred CEEEEcCCCC--CCchHHHHHHhcCCceEEeCCCC-ccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCC
Q 043397 485 DIVLVPSIYE--PCGLAQMIGMRYGAVPVVRKTGG-LADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDK 561 (596)
Q Consensus 485 Di~l~PS~~E--~~gl~~lEAma~G~pvI~s~~gg-~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~ 561 (596)
+-++++-..| ..|-.+--+...|+|+.--.+|- +.|+ +..++ +.-..-+..-+|..+|.+.+++.++
T Consensus 242 ~g~IlTKlD~~argG~aLs~~~~t~~PI~fig~Ge~v~Dl-e~f~p----~~~~~rilgmgDi~~L~ek~~~~~~----- 311 (429)
T TIGR01425 242 GSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDF-EIFKT----QPFISKLLGMGDIEGLIDKVQDLKL----- 311 (429)
T ss_pred cEEEEECccCCCCccHHhhhHHHHCCCeEEEcCCCChhhc-CcCCh----HHHHHHHhcCCCcHHHHHHHHHhhh-----
Confidence 4456665544 35667777788899888766654 3332 22111 0111223345688999999988875
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043397 562 PEEWNRIVQKIMENDNSWNNAAGKYMEIY 590 (596)
Q Consensus 562 ~~~~~~~~~~~~~~~fs~~~~~~~~~~iy 590 (596)
.+..+++.++.....|+.+.+.+++.++-
T Consensus 312 ~~~~~~~~~k~~~~~f~l~D~~~q~~~i~ 340 (429)
T TIGR01425 312 DDNEKALIEKLKEGTFTLRDMYEQFQNLL 340 (429)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34455666666667899999988887764
No 265
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=42.72 E-value=32 Score=34.72 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=26.4
Q ss_pred eeEEEEeecccccccccCHH--HHHhHHHHHHHhcCCeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLG--DVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~--~~~~~La~aL~~~Gh~V~vi~ 149 (596)
|||++. ..||+| +.+.+||.+|+++|++|-++=
T Consensus 1 m~ia~~--------gKGGVGKTTta~nLA~~La~~G~rVLlID 35 (290)
T CHL00072 1 MKLAVY--------GKGGIGKSTTSCNISIALARRGKKVLQIG 35 (290)
T ss_pred CeEEEE--------CCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 787766 357776 467789999999999998884
No 266
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=42.45 E-value=85 Score=30.12 Aligned_cols=87 Identities=20% Similarity=0.148 Sum_probs=57.3
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEE-eccCHHHHHHHHHh-C
Q 043397 407 PLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRIL-LMYSEELSHMLYAA-A 484 (596)
Q Consensus 407 ~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~-g~~~~~~l~~~~a~-a 484 (596)
+++.+-.+-+..+.++.+.+++.++ ++.-++.|..........++.+|+++|+. -+.-+ |.-+.+.+..+... .
T Consensus 61 ~l~~~~~~g~~e~eve~L~~~l~~l---~~d~iv~GaI~s~yqk~rve~lc~~lGl~-~~~PLWg~d~~ell~e~~~~Gf 136 (223)
T COG2102 61 PLVTFDTSGEEEREVEELKEALRRL---KVDGIVAGAIASEYQKERVERLCEELGLK-VYAPLWGRDPEELLEEMVEAGF 136 (223)
T ss_pred ceEEEecCccchhhHHHHHHHHHhC---cccEEEEchhhhHHHHHHHHHHHHHhCCE-EeecccCCCHHHHHHHHHHcCC
Confidence 3555555557888999999999888 47889999843345567788999999984 22333 44445555555554 5
Q ss_pred CEEEEcCCCCCCc
Q 043397 485 DIVLVPSIYEPCG 497 (596)
Q Consensus 485 Di~l~PS~~E~~g 497 (596)
++.++....++++
T Consensus 137 ~~~Iv~Vsa~gL~ 149 (223)
T COG2102 137 EAIIVAVSAEGLD 149 (223)
T ss_pred eEEEEEEeccCCC
Confidence 7777665544443
No 267
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=42.28 E-value=38 Score=30.58 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=29.4
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
||+|++=+ - +.|-....+..+|..|.+.|++|++.=
T Consensus 1 Mk~LIlYs---t--r~GqT~kIA~~iA~~L~e~g~qvdi~d 36 (175)
T COG4635 1 MKTLILYS---T--RDGQTRKIAEYIASHLRESGIQVDIQD 36 (175)
T ss_pred CceEEEEe---c--CCCcHHHHHHHHHHHhhhcCCeeeeee
Confidence 78887722 1 568888999999999999999999973
No 268
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=42.19 E-value=37 Score=34.50 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=26.8
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
..|||.++ |.|.+-..+++.|.+.||+|.++..
T Consensus 3 ~~m~I~ii-----------G~G~~G~~lA~~l~~~G~~V~~~~r 35 (308)
T PRK14619 3 QPKTIAIL-----------GAGAWGSTLAGLASANGHRVRVWSR 35 (308)
T ss_pred CCCEEEEE-----------CccHHHHHHHHHHHHCCCEEEEEeC
Confidence 45899988 3367778999999999999998863
No 269
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=41.82 E-value=36 Score=30.77 Aligned_cols=25 Identities=28% Similarity=0.186 Sum_probs=21.9
Q ss_pred HHHHhHHHHHHHhcCCeEEEEeccc
Q 043397 128 GDVVTGLARACLSRGHTVDIMLPFY 152 (596)
Q Consensus 128 ~~~~~~La~aL~~~Gh~V~vi~p~~ 152 (596)
|.....+|..|+++||+|++++...
T Consensus 8 G~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 8 GNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp SHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CHHHHHHHHHHHHcCCEEEEEeccH
Confidence 6777899999999999999998653
No 270
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=41.42 E-value=4e+02 Score=27.08 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=23.0
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
-|=++.+..|.+.|.++||.|-|+.
T Consensus 62 aGKSTli~~L~~~l~~~G~rVaVlA 86 (323)
T COG1703 62 AGKSTLIEALGRELRERGHRVAVLA 86 (323)
T ss_pred CchHHHHHHHHHHHHHCCcEEEEEE
Confidence 5668899999999999999999998
No 271
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=41.21 E-value=1.1e+02 Score=26.58 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=18.0
Q ss_pred EEeccCHHHHHHHHHhCCEEEEc
Q 043397 468 ILLMYSEELSHMLYAAADIVLVP 490 (596)
Q Consensus 468 ~~g~~~~~~l~~~~a~aDi~l~P 490 (596)
+.|....+...++++.||++|+-
T Consensus 62 ~~g~~~~~~~~~~l~~aDlvl~i 84 (137)
T PF00205_consen 62 YLGLFGSPAANEALEQADLVLAI 84 (137)
T ss_dssp ESCGGSCHHHHHHHHHSSEEEEE
T ss_pred cCCccCCHHHHHHhcCCCEEEEE
Confidence 44555677889999999999864
No 272
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=41.21 E-value=4.3e+02 Score=27.36 Aligned_cols=136 Identities=8% Similarity=-0.020 Sum_probs=67.4
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEecc----CHHHH----HHHHHhCCEEEEcC--CCCCCchHHHHHH
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMY----SEELS----HMLYAAADIVLVPS--IYEPCGLAQMIGM 504 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~----~~~~l----~~~~a~aDi~l~PS--~~E~~gl~~lEAm 504 (596)
+-+++|+|. |.+-...-+...+.|. .+|.+..+- +.+++ ..+...+|++++.| .--+.+....|-+
T Consensus 174 ~k~vLvIGa---Gem~~l~a~~L~~~g~-~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~ 249 (338)
T PRK00676 174 KASLLFIGY---SEINRKVAYYLQRQGY-SRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSWESL 249 (338)
T ss_pred CCEEEEEcc---cHHHHHHHHHHHHcCC-CEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHH
Confidence 456777776 6665555444444443 244444332 22222 25567999999853 2234454444544
Q ss_pred hcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCHHHHHH
Q 043397 505 RYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIMENDNSWNNAAG 584 (596)
Q Consensus 505 a~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 584 (596)
..-.+-+.-|..-.+++-. .. ...+-.++ |.++|.+.+++-++ .+++... +.+.-.+..+.
T Consensus 250 ~~~~~r~~iDLAvPRdId~-v~-----~~~~v~Ly---~iDdL~~i~~~n~~-------~R~~~~~---~ae~iI~~~~~ 310 (338)
T PRK00676 250 ADIPDRIVFDFNVPRTFPW-SE-----TPFPHRYL---DMDFISEWVQKHLQ-------CRKEVNN---KHKLSLREAAY 310 (338)
T ss_pred hhccCcEEEEecCCCCCcc-cc-----ccCCcEEE---EhHHHHHHHHHHHH-------HHHHHHH---HHHHHHHHHHH
Confidence 3211124455554444421 00 02233344 56777766655443 1111111 12345567788
Q ss_pred HHHHHHHHH
Q 043397 585 KYMEIYNSI 593 (596)
Q Consensus 585 ~~~~iy~~l 593 (596)
+|.+.|++=
T Consensus 311 ~~~~~~~~~ 319 (338)
T PRK00676 311 KQWESYEKK 319 (338)
T ss_pred HHHHHHHHH
Confidence 888888753
No 273
>PLN02206 UDP-glucuronate decarboxylase
Probab=41.00 E-value=38 Score=36.55 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=29.1
Q ss_pred CCCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 105 DSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 105 ~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
..+.|||++. ||.|-.-..|+++|.++||+|.++.
T Consensus 116 ~~~~~kILVT----------GatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 116 KRKGLRVVVT----------GGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred ccCCCEEEEE----------CcccHHHHHHHHHHHHCcCEEEEEe
Confidence 3455898876 7888888899999999999999875
No 274
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=40.76 E-value=3.8e+02 Score=26.61 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=65.2
Q ss_pred ccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHH---HcCCCCcEEEE---eccCHHHHHHHHHhC----C-
Q 043397 417 AQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLAN---LHNKGTSTRIL---LMYSEELSHMLYAAA----D- 485 (596)
Q Consensus 417 ~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~---~~~~~~~V~~~---g~~~~~~l~~~~a~a----D- 485 (596)
+.+.++.+.++++..++.+.++.+......+...+.+.++++ +.|. +.|.+. |...++++..+++.. +
T Consensus 104 ~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~-~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~ 182 (266)
T cd07944 104 HKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKP-DVFYIVDSFGSMYPEDIKRIISLLRSNLDK 182 (266)
T ss_pred ccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCC-CEEEEecCCCCCCHHHHHHHHHHHHHhcCC
Confidence 456788899999888776665443322111334455555444 4443 356665 567777777776654 2
Q ss_pred -EEEEcCCCCCCchH---HHHHHhcCCceEEeCCCCcccc
Q 043397 486 -IVLVPSIYEPCGLA---QMIGMRYGAVPVVRKTGGLADT 521 (596)
Q Consensus 486 -i~l~PS~~E~~gl~---~lEAma~G~pvI~s~~gg~~e~ 521 (596)
+-+---.+..+|+. .++|+.+|+-.|-+...|+.+-
T Consensus 183 ~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~~ 222 (266)
T cd07944 183 DIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMGRG 222 (266)
T ss_pred CceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCCCC
Confidence 22222225677775 4899999998888888888874
No 275
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=39.94 E-value=48 Score=31.48 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=27.4
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFY 152 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~ 152 (596)
.+|++| || |.++...++.|.+.|++|+|+.+..
T Consensus 11 k~vLVI----------Gg-G~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 11 KRVVIV----------GG-GKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred CEEEEE----------CC-CHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 377777 66 7888899999999999999998653
No 276
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=39.93 E-value=1.2e+02 Score=28.73 Aligned_cols=101 Identities=18% Similarity=0.155 Sum_probs=58.2
Q ss_pred cCCHHHHHHHHHHHHH-cCCEEEEEecCCCCcchHHHHHHHHHcCCCC-cEEEE-eccCHHHHHHHHHhCCEEEEcCCCC
Q 043397 418 QKGLHLITHAIKRAEE-LGGQMILLGNSPVHWVQKDFEDLANLHNKGT-STRIL-LMYSEELSHMLYAAADIVLVPSIYE 494 (596)
Q Consensus 418 ~KGi~~ll~A~~~l~~-~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~-~V~~~-g~~~~~~l~~~~a~aDi~l~PS~~E 494 (596)
.|=...|..|+.-+.. .+-+++++|.. ......+++.|++-|..- +=+|+ |.+.+-.+ .-+..=|++++....+
T Consensus 49 ~kT~~~L~~A~~~i~~~~~~~ILfVgTk--~~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~-~~~~~Pdliiv~dp~~ 125 (204)
T PRK04020 49 RKTDERIRIAAKFLSRYEPEKILVVSSR--QYGQKPVQKFAEVVGAKAITGRFIPGTLTNPSL-KGYIEPDVVVVTDPRG 125 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCC--HHHHHHHHHHHHHhCCeeecCccCCCcCcCcch-hccCCCCEEEEECCcc
Confidence 3444555555544433 46688888872 223345566666554321 11455 44544332 2233456665554332
Q ss_pred CCchHHHHHHhcCCceEE-eCCCCccccc
Q 043397 495 PCGLAQMIGMRYGAVPVV-RKTGGLADTV 522 (596)
Q Consensus 495 ~~gl~~lEAma~G~pvI~-s~~gg~~e~i 522 (596)
-..++.||...|+|+|+ .|+-.-++.|
T Consensus 126 -~~~AI~EA~kl~IP~IaivDTn~dp~~V 153 (204)
T PRK04020 126 -DAQAVKEAIEVGIPVVALCDTDNLTSNV 153 (204)
T ss_pred -cHHHHHHHHHhCCCEEEEEeCCCCcccC
Confidence 26789999999999999 5766666665
No 277
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=39.77 E-value=2e+02 Score=23.22 Aligned_cols=78 Identities=14% Similarity=0.183 Sum_probs=46.5
Q ss_pred EEEeccCHHHHHHHHHhC--CEEEEcCCC-CCCchHHHHHHh---cCCceEE-eCCCC---ccccccccCCCCCCCccce
Q 043397 467 RILLMYSEELSHMLYAAA--DIVLVPSIY-EPCGLAQMIGMR---YGAVPVV-RKTGG---LADTVFDVDDPSNHEKANG 536 (596)
Q Consensus 467 ~~~g~~~~~~l~~~~a~a--Di~l~PS~~-E~~gl~~lEAma---~G~pvI~-s~~gg---~~e~i~~~~~~~~~~~~~G 536 (596)
.....-+.++....+... |++++-... ..-|+.+++.+. .++|+|+ ++... ..+.... |..|
T Consensus 25 ~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~--------g~~~ 96 (112)
T PF00072_consen 25 EVTTASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRA--------GADD 96 (112)
T ss_dssp EEEEESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHT--------TESE
T ss_pred EEEEECCHHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCCCCHHHHHHHHHC--------CCCE
Confidence 444444555555555443 666666544 334555554443 3666665 44443 2333333 7899
Q ss_pred EEEeCCCHHHHHHHHH
Q 043397 537 FVFEGIDEGSLNWALD 552 (596)
Q Consensus 537 ~lv~~~d~~~la~~i~ 552 (596)
++..|.++++|.++|+
T Consensus 97 ~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 97 YLSKPFSPEELRAAIN 112 (112)
T ss_dssp EEESSSSHHHHHHHHH
T ss_pred EEECCCCHHHHHHhhC
Confidence 9999999999998874
No 278
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=39.74 E-value=53 Score=31.02 Aligned_cols=34 Identities=12% Similarity=-0.020 Sum_probs=26.3
Q ss_pred eeEEEEeecccccccccCHHHHH--hHHHHHHHhcCCeEEEEec
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVV--TGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~--~~La~aL~~~Gh~V~vi~p 150 (596)
+||++- -+||++.+- .++++.|.+.||+|.++..
T Consensus 6 k~Illg--------VTGsiaa~k~a~~lir~L~k~G~~V~vv~T 41 (196)
T PRK08305 6 KRIGFG--------LTGSHCTYDEVMPEIEKLVDEGAEVTPIVS 41 (196)
T ss_pred CEEEEE--------EcCHHHHHHHHHHHHHHHHhCcCEEEEEEC
Confidence 467665 347777764 7999999999999988874
No 279
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=39.39 E-value=40 Score=34.35 Aligned_cols=37 Identities=27% Similarity=0.345 Sum_probs=26.7
Q ss_pred eeEEEEeecccccccccCHHHHH--hHHHHHHHhcCCeEEEEeccc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVV--TGLARACLSRGHTVDIMLPFY 152 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~--~~La~aL~~~Gh~V~vi~p~~ 152 (596)
||+++++ ..||+|.-. ..+|.+++++|++|-+++...
T Consensus 1 ~r~~~~~-------GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dp 39 (305)
T PF02374_consen 1 MRILFFG-------GKGGVGKTTVAAALALALARRGKRTLLVSTDP 39 (305)
T ss_dssp -SEEEEE-------ESTTSSHHHHHHHHHHHHHHTTS-EEEEESST
T ss_pred CeEEEEe-------cCCCCCcHHHHHHHHHHHhhCCCCeeEeecCC
Confidence 7899987 457776554 457888889999999998544
No 280
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=39.35 E-value=39 Score=34.07 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.8
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
||.+-.-...+.+|.+.||+|.|+=
T Consensus 7 GGAGYIGSHtv~~Ll~~G~~vvV~D 31 (329)
T COG1087 7 GGAGYIGSHTVRQLLKTGHEVVVLD 31 (329)
T ss_pred cCcchhHHHHHHHHHHCCCeEEEEe
Confidence 8888888889999999999999984
No 281
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=39.26 E-value=2.5e+02 Score=25.71 Aligned_cols=98 Identities=23% Similarity=0.183 Sum_probs=54.8
Q ss_pred ccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHH-HHHHHHcCCCCcEEEEe----ccCHHH---HHHHHH--hCCE
Q 043397 417 AQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDF-EDLANLHNKGTSTRILL----MYSEEL---SHMLYA--AADI 486 (596)
Q Consensus 417 ~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l-~~~~~~~~~~~~V~~~g----~~~~~~---l~~~~a--~aDi 486 (596)
.--|.|++.+.++...+++.++.++|.+ ....+.+ +.+.++ .+++.+.| +...++ +...++ .+|+
T Consensus 28 r~~g~dl~~~ll~~~~~~~~~v~llG~~--~~~~~~~~~~l~~~---yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdi 102 (171)
T cd06533 28 RVTGSDLMPALLELAAQKGLRVFLLGAK--PEVLEKAAERLRAR---YPGLKIVGYHHGYFGPEEEEEIIERINASGADI 102 (171)
T ss_pred ccCcHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHH---CCCcEEEEecCCCCChhhHHHHHHHHHHcCCCE
Confidence 4458899999998887778899999972 1122222 233334 34555555 343333 333333 4588
Q ss_pred EEEcC---CCCCCchHHHHHHhcCCceEEeCCCCccccc
Q 043397 487 VLVPS---IYEPCGLAQMIGMRYGAVPVVRKTGGLADTV 522 (596)
Q Consensus 487 ~l~PS---~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i 522 (596)
+++-. ..|-+-....+.+ . ..|.-.+||.-|..
T Consensus 103 v~vglG~PkQE~~~~~~~~~l--~-~~v~~~vG~~~d~~ 138 (171)
T cd06533 103 LFVGLGAPKQELWIARHKDRL--P-VPVAIGVGGSFDFL 138 (171)
T ss_pred EEEECCCCHHHHHHHHHHHHC--C-CCEEEEeceeeEec
Confidence 77643 3465554444444 2 33344477766655
No 282
>PRK07454 short chain dehydrogenase; Provisional
Probab=39.16 E-value=41 Score=32.40 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=26.0
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
.||.++|+ ||.+..-..+++.|.++|++|.++..
T Consensus 5 ~~k~vlIt---------G~sg~iG~~la~~l~~~G~~V~~~~r 38 (241)
T PRK07454 5 SMPRALIT---------GASSGIGKATALAFAKAGWDLALVAR 38 (241)
T ss_pred CCCEEEEe---------CCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 46766664 55566667899999999999998874
No 283
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=39.15 E-value=40 Score=32.52 Aligned_cols=73 Identities=16% Similarity=0.105 Sum_probs=43.2
Q ss_pred cccccCC-HHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHH---HHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEE
Q 043397 414 RLVAQKG-LHLITHAIKRAEELGGQMILLGNSPVHWVQKDFE---DLANLHNKGTSTRILLMYSEELSHMLYAAADIVLV 489 (596)
Q Consensus 414 rl~~~KG-i~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~---~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~ 489 (596)
-++|.|- .+...+.++.+.+.+...+++|+ .+|-..+.+. +.++++. -+-|.|.|..+. +-..||.+++
T Consensus 5 liDPdK~~~~~~~~~~~~~~~~gtdai~vGG-S~~vt~~~~~~~v~~ik~~~-lPvilfp~~~~~-----i~~~aDa~l~ 77 (223)
T TIGR01768 5 LIDPDKTNPSEADEIAKAAAESGTDAILIGG-SQGVTYEKTDTLIEALRRYG-LPIILFPSNPTN-----VSRDADALFF 77 (223)
T ss_pred eECCCCCCccccHHHHHHHHhcCCCEEEEcC-CCcccHHHHHHHHHHHhccC-CCEEEeCCCccc-----cCcCCCEEEE
Confidence 4566662 33344555556556788888887 3343344444 3444544 344556655543 5677999999
Q ss_pred cCCC
Q 043397 490 PSIY 493 (596)
Q Consensus 490 PS~~ 493 (596)
||..
T Consensus 78 ~svl 81 (223)
T TIGR01768 78 PSVL 81 (223)
T ss_pred EEee
Confidence 9953
No 284
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=39.11 E-value=1e+02 Score=25.58 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=21.8
Q ss_pred cCCEEEEEecCCCCcchHHHHHHHHHcCCC
Q 043397 434 LGGQMILLGNSPVHWVQKDFEDLANLHNKG 463 (596)
Q Consensus 434 ~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~ 463 (596)
|+.+|+++|+++.. ..+.+.+.++++...
T Consensus 63 P~~kfiLIGDsgq~-DpeiY~~ia~~~P~~ 91 (100)
T PF09949_consen 63 PERKFILIGDSGQH-DPEIYAEIARRFPGR 91 (100)
T ss_pred CCCcEEEEeeCCCc-CHHHHHHHHHHCCCC
Confidence 78899999995433 467778888887643
No 285
>PRK06703 flavodoxin; Provisional
Probab=39.01 E-value=54 Score=29.23 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=29.3
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
+|||+++-.. ..|-...++..+++.+.+.|++|.++-
T Consensus 1 mmkv~IiY~S-----~tGnT~~iA~~ia~~l~~~g~~v~~~~ 37 (151)
T PRK06703 1 MAKILIAYAS-----MSGNTEDIADLIKVSLDAFDHEVVLQE 37 (151)
T ss_pred CCeEEEEEEC-----CCchHHHHHHHHHHHHHhcCCceEEEe
Confidence 4777766322 458889999999999999999998874
No 286
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=38.82 E-value=46 Score=28.92 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=23.8
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
|||++..... ++ ...+.++.+.|.+.|++|.++..
T Consensus 1 k~i~l~vtGs------~~-~~~~~~~l~~L~~~g~~v~vv~S 35 (129)
T PF02441_consen 1 KRILLGVTGS------IA-AYKAPDLLRRLKRAGWEVRVVLS 35 (129)
T ss_dssp -EEEEEE-SS------GG-GGGHHHHHHHHHTTTSEEEEEES
T ss_pred CEEEEEEECH------HH-HHHHHHHHHHHhhCCCEEEEEEC
Confidence 5777765321 22 33377899999999999998874
No 287
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=38.69 E-value=1.6e+02 Score=25.75 Aligned_cols=47 Identities=17% Similarity=0.115 Sum_probs=27.1
Q ss_pred HHHHHHhCCEEEEcCCCCCC--chHH---HHHHhcCCceEEeCCCCccccccc
Q 043397 477 SHMLYAAADIVLVPSIYEPC--GLAQ---MIGMRYGAVPVVRKTGGLADTVFD 524 (596)
Q Consensus 477 l~~~~a~aDi~l~PS~~E~~--gl~~---lEAma~G~pvI~s~~gg~~e~i~~ 524 (596)
-..++..||++|+-- -|-+ -.+. -=|.|.|+|.|.-.-..+..-+.+
T Consensus 69 T~~li~~aDvvVvrF-GekYKQWNaAfDAg~aaAlgKplI~lh~~~~~HpLKE 120 (144)
T TIGR03646 69 TRKLIEKADVVIALF-GEKYKQWNAAFDAGYAAALGKPLIILRPEELIHPLKE 120 (144)
T ss_pred HHHHHhhCCEEEEEe-chHHHHHHHHhhHHHHHHcCCCeEEecchhccccHHH
Confidence 467889999998641 0111 1222 345789999998554444443333
No 288
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=38.56 E-value=57 Score=30.73 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=28.1
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
||++.|+..- ..-|-...+.+||.+|+++|++|.++=
T Consensus 17 ~kvI~v~s~k----gG~GKTt~a~~LA~~la~~G~rVllID 53 (204)
T TIGR01007 17 IKVLLITSVK----PGEGKSTTSANIAVAFAQAGYKTLLID 53 (204)
T ss_pred CcEEEEecCC----CCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 8877776433 123556688999999999999998874
No 289
>CHL00067 rps2 ribosomal protein S2
Probab=38.55 E-value=3.3e+02 Score=26.44 Aligned_cols=38 Identities=21% Similarity=0.099 Sum_probs=27.6
Q ss_pred CCEEEEcCCCCCCchHHHHHHhcCCceEE-eCCCCccccc
Q 043397 484 ADIVLVPSIYEPCGLAQMIGMRYGAVPVV-RKTGGLADTV 522 (596)
Q Consensus 484 aDi~l~PS~~E~~gl~~lEAma~G~pvI~-s~~gg~~e~i 522 (596)
-|++++....+. ..++.||.-.|+|+|+ .|+..-++.+
T Consensus 162 P~~iiv~d~~~~-~~ai~Ea~~l~IPvIaivDTn~~p~~i 200 (230)
T CHL00067 162 PDIVIIIDQQEE-YTALRECRKLGIPTISILDTNCDPDLA 200 (230)
T ss_pred CCEEEEeCCccc-HHHHHHHHHcCCCEEEEEeCCCCcccc
Confidence 466665554432 3789999999999999 6776666666
No 290
>PLN03007 UDP-glucosyltransferase family protein
Probab=38.36 E-value=54 Score=35.81 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=29.0
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
++++|+++. ++..|=+.- ..+||+.|+.+|++|+++++.
T Consensus 4 ~~~hVvlvp-----~pa~GHi~P-~L~LAk~L~~rG~~VT~vtt~ 42 (482)
T PLN03007 4 EKLHILFFP-----FMAHGHMIP-TLDMAKLFSSRGAKSTILTTP 42 (482)
T ss_pred CCcEEEEEC-----CCccccHHH-HHHHHHHHHhCCCEEEEEECC
Confidence 456899984 323454444 469999999999999999964
No 291
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=38.29 E-value=5.3e+02 Score=27.62 Aligned_cols=169 Identities=12% Similarity=0.082 Sum_probs=91.8
Q ss_pred EEecccccC-CHHHHHHHHHHHHHcCCEEEEEecCC----CCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhC-
Q 043397 411 CITRLVAQK-GLHLITHAIKRAEELGGQMILLGNSP----VHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAA- 484 (596)
Q Consensus 411 ~iGrl~~~K-Gi~~ll~A~~~l~~~~~~lvIvG~~~----~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~a- 484 (596)
|.+. ...+ =++..-++++..++....++|+-.++ |....+++++..+..+-+.-+........++....-.+.
T Consensus 158 ~f~~-~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~ 236 (451)
T COG0541 158 FFGS-GTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFN 236 (451)
T ss_pred eecC-CCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHh
Confidence 4444 3344 45566778888877777888876541 234445555555544333233444544433333322222
Q ss_pred ---CE-EEEcCCC--CCC-chHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 485 ---DI-VLVPSIY--EPC-GLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 485 ---Di-~l~PS~~--E~~-gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
++ .++-+.. ..- |-++--.-..|+|+-=-.+|---+-++..+++ .-..-+.--+|..+|.+..++.++
T Consensus 237 e~l~itGvIlTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~----R~asRILGMGDv~sLvEk~~~~~d- 311 (451)
T COG0541 237 EALGITGVILTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPD----RFASRILGMGDVLSLIEKAEEVVD- 311 (451)
T ss_pred hhcCCceEEEEcccCCCcchHHHhhHHHHCCCeEEEecCCCcccCCCcChH----HHHHHhcCcccHHHHHHHHHHhhh-
Confidence 22 1233333 232 33444445678876554444322222221111 112223334688999999999885
Q ss_pred ccCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043397 558 FIDKPEEWNRIVQKIMENDNSWNNAAGKYMEI 589 (596)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~i 589 (596)
.+..+++.++...-+|+.+.+.+++.++
T Consensus 312 ----~e~a~~~~~kl~~g~FtL~Df~~Ql~~m 339 (451)
T COG0541 312 ----EEEAEKLAEKLKKGKFTLEDFLEQLEQM 339 (451)
T ss_pred ----HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4566777777777789999999988776
No 292
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=37.53 E-value=4.6e+02 Score=26.65 Aligned_cols=89 Identities=12% Similarity=-0.055 Sum_probs=53.5
Q ss_pred hhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEE
Q 043397 389 ICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRI 468 (596)
Q Consensus 389 ~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~ 468 (596)
.+--.+++.+|. -+...|+++|. ..+=...++.++..+ ++++.+++...--+..+.++.++++.|. .+.+
T Consensus 138 ~Dl~Ti~e~~g~---l~gl~i~~vGd--~~~v~~Sl~~~l~~~---g~~v~~~~P~~~~~~~~~~~~~~~~~g~--~~~~ 207 (304)
T PRK00779 138 ADLLTIYEHRGS---LKGLKVAWVGD--GNNVANSLLLAAALL---GFDLRVATPKGYEPDPEIVEKIAKETGA--SIEV 207 (304)
T ss_pred HHHHHHHHHhCC---cCCcEEEEEeC--CCccHHHHHHHHHHc---CCEEEEECCcccCCCHHHHHHHHHHcCC--eEEE
Confidence 345566777774 35578999997 334456666666554 7999999972111111222333454442 3443
Q ss_pred EeccCHHHHHHHHHhCCEEEEcCC
Q 043397 469 LLMYSEELSHMLYAAADIVLVPSI 492 (596)
Q Consensus 469 ~g~~~~~~l~~~~a~aDi~l~PS~ 492 (596)
. + ++.+.+..||++...++
T Consensus 208 ~---~--d~~~a~~~aDvvy~~~w 226 (304)
T PRK00779 208 T---H--DPKEAVKGADVVYTDVW 226 (304)
T ss_pred E---c--CHHHHhCCCCEEEecCc
Confidence 2 2 36678999999998754
No 293
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=37.49 E-value=4.9e+02 Score=27.04 Aligned_cols=147 Identities=15% Similarity=0.080 Sum_probs=90.0
Q ss_pred EEEecccccCCHH---HHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCC--CCcEEEEeccCHHHHHHHHHhC
Q 043397 410 VCITRLVAQKGLH---LITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNK--GTSTRILLMYSEELSHMLYAAA 484 (596)
Q Consensus 410 l~iGrl~~~KGi~---~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~--~~~V~~~g~~~~~~l~~~~a~a 484 (596)
+|=-++.--|.-. ++.+++-+..-.-++.+.+-++-+-.....+...+..+.+ ++...|.|+.+-.+. +-+..
T Consensus 194 vfEPNi~vvK~~~~PmLi~E~aYR~~P~~v~~~~V~Nt~~~ke~~~F~~f~~~ldlvr~gkasfegR~~~p~f--la~~t 271 (364)
T PF10933_consen 194 VFEPNISVVKTCFIPMLICEEAYRADPDAVEHVYVTNTYHLKEHPTFVNFANSLDLVRDGKASFEGRFDFPDF--LAQHT 271 (364)
T ss_pred EecCCceEEeecCccHHHHHHHHHhChhhcceEEEecchhhhcCHHHHHHHHhhHHhhcCeeEEeeecChHHH--HHhCC
Confidence 4445555566532 3444444432234566666664333445566666665544 456899999886443 33446
Q ss_pred CEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHH
Q 043397 485 DIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEE 564 (596)
Q Consensus 485 Di~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~ 564 (596)
|++|+=-..-+....-+||+--|=|.|- + +.++. +.|+.++..|..+=+++|.+++..-.++-+.
T Consensus 272 D~VvSHqWeN~lNYlY~daLyggYPLVH-N----S~~l~----------d~GYYY~~fD~~~G~r~L~~A~~~HD~~~~~ 336 (364)
T PF10933_consen 272 DAVVSHQWENPLNYLYYDALYGGYPLVH-N----SPLLK----------DVGYYYPDFDAFEGARQLLRAIREHDADLDA 336 (364)
T ss_pred CEEEeccccchhhHHHHHHHhcCCCccc-C----cchhc----------ccCcCCCCccHHHHHHHHHHHHHHccccHHH
Confidence 8877543334677788999999976664 2 23443 3899999999999999999998754333333
Q ss_pred HHHHHHHHH
Q 043397 565 WNRIVQKIM 573 (596)
Q Consensus 565 ~~~~~~~~~ 573 (596)
+.+-.++.+
T Consensus 337 Y~~ra~~~l 345 (364)
T PF10933_consen 337 YRARARRLL 345 (364)
T ss_pred HHHHHHHHH
Confidence 333333333
No 294
>PRK07308 flavodoxin; Validated
Probab=37.47 E-value=57 Score=28.89 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=23.7
Q ss_pred cccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 123 KVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 123 ~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
..|..+.++..+++.|.+.|++|.+.-
T Consensus 11 ~tGnTe~iA~~ia~~l~~~g~~~~~~~ 37 (146)
T PRK07308 11 MTGNTEEIADIVADKLRELGHDVDVDE 37 (146)
T ss_pred CCchHHHHHHHHHHHHHhCCCceEEEe
Confidence 468899999999999999999988763
No 295
>PRK06924 short chain dehydrogenase; Provisional
Probab=37.32 E-value=43 Score=32.46 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=20.5
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+..-..++++|+++|++|.++..
T Consensus 8 GasggiG~~ia~~l~~~g~~V~~~~r 33 (251)
T PRK06924 8 GTSQGLGEAIANQLLEKGTHVISISR 33 (251)
T ss_pred cCCchHHHHHHHHHHhcCCEEEEEeC
Confidence 55555666889999999999988764
No 296
>PLN02208 glycosyltransferase family protein
Probab=37.06 E-value=52 Score=35.47 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=28.7
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+++|+++ |++..|= -.=..+||+.|+.+|++|+++++.
T Consensus 4 ~~hvv~~-----P~paqGH-i~P~l~LAk~La~~G~~VT~vtt~ 41 (442)
T PLN02208 4 KFHAFMF-----PWFAFGH-MIPFLHLANKLAEKGHRVTFLLPK 41 (442)
T ss_pred CCEEEEe-----cCccccH-HHHHHHHHHHHHhCCCEEEEEecc
Confidence 4788888 4434454 444569999999999999999954
No 297
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=37.03 E-value=48 Score=34.02 Aligned_cols=34 Identities=26% Similarity=0.250 Sum_probs=27.0
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+.|||.++ |.|.+-..++..|++.||+|+++...
T Consensus 3 ~~m~I~iI-----------G~G~mG~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 3 HGMRVAVL-----------GAGAWGTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCCeEEEE-----------CcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 36899888 23566678899999999999999754
No 298
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=36.96 E-value=1.4e+02 Score=28.28 Aligned_cols=100 Identities=14% Similarity=0.080 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHH-cCCEEEEEecCCCCcchHHHHHHHHHcCCCC-cEEEE-eccCHHHHHHHHHhCCEEEEcCCCCC
Q 043397 419 KGLHLITHAIKRAEE-LGGQMILLGNSPVHWVQKDFEDLANLHNKGT-STRIL-LMYSEELSHMLYAAADIVLVPSIYEP 495 (596)
Q Consensus 419 KGi~~ll~A~~~l~~-~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~-~V~~~-g~~~~~~l~~~~a~aDi~l~PS~~E~ 495 (596)
|=...|..|+.-+.+ .+-+++++|.. ......+++.|+.-|... +=+|+ |.+..-.. .-+..-|++++....+
T Consensus 44 kT~~~L~~A~~~i~~i~~~~ILfVgtk--~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~-~~~~~Pdlliv~dp~~- 119 (196)
T TIGR01012 44 KTDERLRVAAKFLVRIEPEDILVVSAR--IYGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQ-KAFREPEVVVVTDPRA- 119 (196)
T ss_pred HHHHHHHHHHHHHHHhhCCeEEEEecC--HHHHHHHHHHHHHhCCceECCeeCCCCCCCccc-cccCCCCEEEEECCcc-
Confidence 334445555443332 36688999982 223344556665544321 12566 44443221 2245556766654332
Q ss_pred CchHHHHHHhcCCceEE-eCCCCccccc
Q 043397 496 CGLAQMIGMRYGAVPVV-RKTGGLADTV 522 (596)
Q Consensus 496 ~gl~~lEAma~G~pvI~-s~~gg~~e~i 522 (596)
-..++.||...|+|+|+ .|+-.-++.|
T Consensus 120 ~~~Av~EA~~l~IP~Iai~DTn~dp~~v 147 (196)
T TIGR01012 120 DHQALKEASEVGIPIVALCDTDNPLRYV 147 (196)
T ss_pred ccHHHHHHHHcCCCEEEEeeCCCCCccC
Confidence 35689999999999999 5666666665
No 299
>PLN02427 UDP-apiose/xylose synthase
Probab=36.95 E-value=46 Score=34.96 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=28.8
Q ss_pred cCCCceeEEEEeecccccccccCHHHHHhHHHHHHHhc-CCeEEEEe
Q 043397 104 KDSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSR-GHTVDIML 149 (596)
Q Consensus 104 ~~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~-Gh~V~vi~ 149 (596)
+...+|||++. ||.|-.-..|++.|.++ ||+|.++.
T Consensus 10 ~~~~~~~VlVT----------GgtGfIGs~lv~~L~~~~g~~V~~l~ 46 (386)
T PLN02427 10 KPIKPLTICMI----------GAGGFIGSHLCEKLMTETPHKVLALD 46 (386)
T ss_pred CcccCcEEEEE----------CCcchHHHHHHHHHHhcCCCEEEEEe
Confidence 34456898865 88888888999999998 59998875
No 300
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=36.94 E-value=2.5e+02 Score=24.23 Aligned_cols=55 Identities=16% Similarity=0.033 Sum_probs=44.5
Q ss_pred cEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCcccc
Q 043397 465 STRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADT 521 (596)
Q Consensus 465 ~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~ 521 (596)
.|.+....+.+++...++.+|+++..+.. .+.-.+++++ -++-.|++...|...+
T Consensus 20 ~v~~~~~~~~~~~~~~l~~~d~ii~~~~~-~~~~~~l~~~-~~Lk~I~~~~~G~d~i 74 (133)
T PF00389_consen 20 EVEFCDSPSEEELAERLKDADAIIVGSGT-PLTAEVLEAA-PNLKLISTAGAGVDNI 74 (133)
T ss_dssp EEEEESSSSHHHHHHHHTTESEEEESTTS-TBSHHHHHHH-TT-SEEEESSSSCTTB
T ss_pred eEEEeCCCCHHHHHHHhCCCeEEEEcCCC-CcCHHHHhcc-ceeEEEEEcccccCcc
Confidence 69999999999999999999999975443 4677788877 8888999888887654
No 301
>PRK08309 short chain dehydrogenase; Provisional
Probab=36.90 E-value=53 Score=30.40 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=19.9
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+ +...+++.|.++|++|.+++.
T Consensus 7 GGtG-~gg~la~~L~~~G~~V~v~~R 31 (177)
T PRK08309 7 GGTG-MLKRVSLWLCEKGFHVSVIAR 31 (177)
T ss_pred CcCH-HHHHHHHHHHHCcCEEEEEEC
Confidence 6654 445699999999999998874
No 302
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=36.82 E-value=57 Score=32.63 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=30.7
Q ss_pred CCCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 105 DSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 105 ~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
....+||++. ||.+-+...|++.|...||+|.++=-.
T Consensus 24 p~~~lrI~it----------GgaGFIgSHLvdkLm~egh~VIa~Dn~ 60 (350)
T KOG1429|consen 24 PSQNLRILIT----------GGAGFIGSHLVDKLMTEGHEVIALDNY 60 (350)
T ss_pred CCCCcEEEEe----------cCcchHHHHHHHHHHhcCCeEEEEecc
Confidence 3445899986 788899999999999999999998543
No 303
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=36.77 E-value=57 Score=30.60 Aligned_cols=39 Identities=23% Similarity=0.246 Sum_probs=26.9
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcC-CeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRG-HTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~G-h~V~vi~ 149 (596)
||||+|...--+ ..+-....+..+++++.++| ++|.++=
T Consensus 1 mkiLvI~asp~~--~~S~s~~l~~~~~~~~~~~~~~~v~~~d 40 (199)
T PF02525_consen 1 MKILVINASPRP--EGSFSRALADAFLEGLQEAGPHEVEIRD 40 (199)
T ss_dssp EEEEEEE--SST--TTSHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CEEEEEEcCCCC--ccCHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 899999765433 12233566677899999999 8998873
No 304
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=36.50 E-value=45 Score=32.98 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=21.0
Q ss_pred ccCHH--HHHhHHHHHHHhcCCeEEEE
Q 043397 124 VGGLG--DVVTGLARACLSRGHTVDIM 148 (596)
Q Consensus 124 ~GG~~--~~~~~La~aL~~~Gh~V~vi 148 (596)
.||+| +.+.+||.+|+++|++|-++
T Consensus 8 KGGVGKTT~~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 47765 55788999999999999888
No 305
>PRK05693 short chain dehydrogenase; Provisional
Probab=36.48 E-value=43 Score=33.06 Aligned_cols=34 Identities=26% Similarity=0.187 Sum_probs=24.0
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||+++|| ||.+..-..+++.|.++|++|.+++..
T Consensus 1 mk~vlIt---------GasggiG~~la~~l~~~G~~V~~~~r~ 34 (274)
T PRK05693 1 MPVVLIT---------GCSSGIGRALADAFKAAGYEVWATARK 34 (274)
T ss_pred CCEEEEe---------cCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 5666665 444444457888999999999887643
No 306
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=36.29 E-value=2.4e+02 Score=27.93 Aligned_cols=98 Identities=12% Similarity=0.084 Sum_probs=60.2
Q ss_pred EecccccCCHHHHHHHHHHHHHcCCEEEEEec--C------CCC---cchHHHHHHHHHcCCCCcEEEEeccCHHHHHHH
Q 043397 412 ITRLVAQKGLHLITHAIKRAEELGGQMILLGN--S------PVH---WVQKDFEDLANLHNKGTSTRILLMYSEELSHML 480 (596)
Q Consensus 412 iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~--~------~~g---~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~ 480 (596)
++-...-...+.+++.++++.+...++...+- + ..| .....+++.++++|+ -.+....+.+.+..+
T Consensus 29 IAGpc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~g~~gl~~l~~~~~~~Gl---~~~t~~~d~~~~~~l 105 (260)
T TIGR01361 29 IAGPCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADEHGL---PVVTEVMDPRDVEIV 105 (260)
T ss_pred EEeCCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCCccccccHHHHHHHHHHHHHHhCC---CEEEeeCChhhHHHH
Confidence 44455566788888888888764444333210 0 011 223456667777776 344455666666667
Q ss_pred HHhCCEEEEcCCC-CCCchHHHHH-HhcCCceEEeC
Q 043397 481 YAAADIVLVPSIY-EPCGLAQMIG-MRYGAVPVVRK 514 (596)
Q Consensus 481 ~a~aDi~l~PS~~-E~~gl~~lEA-ma~G~pvI~s~ 514 (596)
...+|++-+||.. .. ..++++ ...|+||+.+.
T Consensus 106 ~~~~d~lkI~s~~~~n--~~LL~~~a~~gkPVilk~ 139 (260)
T TIGR01361 106 AEYADILQIGARNMQN--FELLKEVGKQGKPVLLKR 139 (260)
T ss_pred HhhCCEEEECcccccC--HHHHHHHhcCCCcEEEeC
Confidence 6779999999974 33 334444 46799999865
No 307
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=36.22 E-value=59 Score=30.95 Aligned_cols=73 Identities=19% Similarity=0.184 Sum_probs=44.6
Q ss_pred cccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHH---HHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEc
Q 043397 414 RLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDL---ANLHNKGTSTRILLMYSEELSHMLYAAADIVLVP 490 (596)
Q Consensus 414 rl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~---~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~P 490 (596)
-++|.|- +.+.+.++.+.+.+...+++|++ +|-..+.+.++ +++.-.-+-+.|.|..+. +-..+|.+++|
T Consensus 4 ~iDP~k~-e~~~~ia~~v~~~gtDaI~VGGS-~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~~-----i~~~aD~~~~~ 76 (205)
T TIGR01769 4 LIDPEKS-DEIEKIAKNAKDAGTDAIMVGGS-LGIVESNLDQTVKKIKKITNLPVILFPGNVNG-----LSRYADAVFFM 76 (205)
T ss_pred ccCCCcH-HHHHHHHHHHHhcCCCEEEEcCc-CCCCHHHHHHHHHHHHhhcCCCEEEECCCccc-----cCcCCCEEEEE
Confidence 3566666 66666666676667888888862 34444444433 344222244556555543 55779999999
Q ss_pred CCC
Q 043397 491 SIY 493 (596)
Q Consensus 491 S~~ 493 (596)
|..
T Consensus 77 sll 79 (205)
T TIGR01769 77 SLL 79 (205)
T ss_pred Eee
Confidence 953
No 308
>PRK06444 prephenate dehydrogenase; Provisional
Probab=36.22 E-value=40 Score=31.90 Aligned_cols=28 Identities=29% Similarity=0.156 Sum_probs=21.6
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEE
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVD 146 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~ 146 (596)
|||++| ||.+.+-.-+++.|.+.||+|.
T Consensus 1 ~~~~ii----------G~~G~mG~~~~~~~~~~g~~v~ 28 (197)
T PRK06444 1 MMEIII----------GKNGRLGRVLCSILDDNGLGVY 28 (197)
T ss_pred CEEEEE----------ecCCcHHHHHHHHHHhCCCEEE
Confidence 688887 5555566677888889999986
No 309
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=36.19 E-value=5.3e+02 Score=28.51 Aligned_cols=101 Identities=15% Similarity=0.049 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHH
Q 043397 423 LITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMI 502 (596)
Q Consensus 423 ~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lE 502 (596)
.+++++...++..-++-|+|. +.....++.+++-++.+ +...-..+.+++...+. +
T Consensus 85 Dil~al~~a~~~~~~ia~vg~---~~~~~~~~~~~~ll~~~--i~~~~~~~~~e~~~~~~-------------------~ 140 (526)
T TIGR02329 85 DVMQALARARRIASSIGVVTH---QDTPPALRRFQAAFNLD--IVQRSYVTEEDARSCVN-------------------D 140 (526)
T ss_pred hHHHHHHHHHhcCCcEEEEec---CcccHHHHHHHHHhCCc--eEEEEecCHHHHHHHHH-------------------H
Confidence 478888887665668889998 66667777777777764 77777777777766553 2
Q ss_pred HHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 503 GMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 503 Ama~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
+-+.|+-+|+.+.-. .++.... |-+|+++.. .+++..++++++..
T Consensus 141 l~~~G~~~viG~~~~-~~~A~~~-------gl~~ili~s--~esi~~a~~~A~~~ 185 (526)
T TIGR02329 141 LRARGIGAVVGAGLI-TDLAEQA-------GLHGVFLYS--ADSVRQAFDDALDV 185 (526)
T ss_pred HHHCCCCEEECChHH-HHHHHHc-------CCceEEEec--HHHHHHHHHHHHHH
Confidence 233344444432211 1222211 346777753 48888888888764
No 310
>PLN02448 UDP-glycosyltransferase family protein
Probab=35.97 E-value=58 Score=35.30 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=30.9
Q ss_pred CCCceeEEEEeecccccccccCHHHHHhHHHHHHHhc--CCeEEEEecc
Q 043397 105 DSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSR--GHTVDIMLPF 151 (596)
Q Consensus 105 ~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~--Gh~V~vi~p~ 151 (596)
.+.+.||+++. ++..|=+.-+ .+|++.|+++ ||+|+++++.
T Consensus 7 ~~~~~hVvlvp-----~pa~GHi~P~-l~LA~~L~~~~~G~~VT~~~t~ 49 (459)
T PLN02448 7 PTTSCHVVAMP-----YPGRGHINPM-MNLCKLLASRKPDILITFVVTE 49 (459)
T ss_pred CCCCcEEEEEC-----CcccccHHHH-HHHHHHHHcCCCCcEEEEEeCC
Confidence 34567999994 3245655555 5899999999 9999999964
No 311
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=35.92 E-value=1.7e+02 Score=26.87 Aligned_cols=54 Identities=19% Similarity=0.159 Sum_probs=37.1
Q ss_pred cCCEEEEEecCCCCcc-hHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCC
Q 043397 434 LGGQMILLGNSPVHWV-QKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIY 493 (596)
Q Consensus 434 ~~~~lvIvG~~~~g~~-~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~ 493 (596)
.+-+++|+|. |.+ -..+.+...+.+. +|.+..+. .+++.+.++.||+++...-.
T Consensus 43 ~gk~vlViG~---G~~~G~~~a~~L~~~g~--~V~v~~r~-~~~l~~~l~~aDiVIsat~~ 97 (168)
T cd01080 43 AGKKVVVVGR---SNIVGKPLAALLLNRNA--TVTVCHSK-TKNLKEHTKQADIVIVAVGK 97 (168)
T ss_pred CCCEEEEECC---cHHHHHHHHHHHhhCCC--EEEEEECC-chhHHHHHhhCCEEEEcCCC
Confidence 4679999999 765 3334444444443 46666654 35678899999999987654
No 312
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=35.92 E-value=1.3e+02 Score=28.23 Aligned_cols=43 Identities=23% Similarity=0.318 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcC
Q 043397 221 FSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHN 273 (596)
Q Consensus 221 f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~ 273 (596)
|-..+.+.+.. .+||+|.+-.|+--+.|.++... .+ -++.+|-
T Consensus 67 ~d~~l~~~l~~--~~~dlvvLAGyMrIL~~~fl~~~------~g--rIlNIHP 109 (200)
T COG0299 67 FDRALVEALDE--YGPDLVVLAGYMRILGPEFLSRF------EG--RILNIHP 109 (200)
T ss_pred HHHHHHHHHHh--cCCCEEEEcchHHHcCHHHHHHh------hc--ceEecCc
Confidence 55666666654 69999999888877777776543 22 3678883
No 313
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=35.78 E-value=1.8e+02 Score=25.66 Aligned_cols=36 Identities=19% Similarity=0.104 Sum_probs=29.1
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
-+|+.+..+--| .+-.+..++.|.++||+|.-+-|.
T Consensus 17 K~IAvVG~S~~P-------~r~sy~V~kyL~~~GY~ViPVNP~ 52 (140)
T COG1832 17 KTIAVVGASDKP-------DRPSYRVAKYLQQKGYRVIPVNPK 52 (140)
T ss_pred ceEEEEecCCCC-------CccHHHHHHHHHHCCCEEEeeCcc
Confidence 368888776666 567788999999999999988764
No 314
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=35.66 E-value=1.3e+02 Score=31.37 Aligned_cols=110 Identities=14% Similarity=0.061 Sum_probs=70.4
Q ss_pred HHHHHhhcCCCC-CCCccEEEEEecccccCC-HHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHH----HcC---
Q 043397 391 KYYIQKGLGLKS-EGTVPLVVCITRLVAQKG-LHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLAN----LHN--- 461 (596)
Q Consensus 391 k~~~~~~l~l~~-~~~~~~il~iGrl~~~KG-i~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~----~~~--- 461 (596)
+..+.+++|++. +++...|...+ ..+. +..+++++.... ..+.++|.++ .....+..... .-|
T Consensus 168 ~~~~~~~lg~~~~~~~~~~vslF~---Ye~~~l~~ll~~~~~~~-~pv~llvp~g----~~~~~~~~~~~~~~~~~g~~~ 239 (374)
T PF10093_consen 168 RAAFLRRLGLPEPEPGALRVSLFC---YENAALASLLDAWAASP-KPVHLLVPEG----RALNSLAAWLGDALLQAGDSW 239 (374)
T ss_pred HHHHHHHcCCCCCCCCCeEEEEEe---CCchHHHHHHHHHhcCC-CCeEEEecCC----ccHHHHHHHhccccccCcccc
Confidence 566777888852 23444433333 3444 788888887553 3677777775 44444433321 001
Q ss_pred CCC--cEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEe
Q 043397 462 KGT--STRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVR 513 (596)
Q Consensus 462 ~~~--~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s 513 (596)
..+ .++++.++++++...++..||+-++= -|- +.+-|.-+|+|.|=.
T Consensus 240 ~~g~l~l~~lPF~~Q~~yD~LLw~cD~NfVR--GED---SfVRAqwAgkPFvWh 288 (374)
T PF10093_consen 240 QRGNLTLHVLPFVPQDDYDRLLWACDFNFVR--GED---SFVRAQWAGKPFVWH 288 (374)
T ss_pred ccCCeEEEECCCCCHHHHHHHHHhCccceEe--cch---HHHHHHHhCCCceEe
Confidence 112 37788999999999999999998753 343 578899999988753
No 315
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=35.42 E-value=41 Score=34.36 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=28.7
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
|||+|+-. |.....--......|..+..++||+|.++.+.
T Consensus 1 m~~~~~~~---~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~ 40 (312)
T TIGR01380 1 LKVAFQMD---PIESINIGKDTTFALMEEAQKRGHELFFYEPG 40 (312)
T ss_pred CeEEEEeC---CHHHCCCCcChHHHHHHHHHHcCCEEEEEehh
Confidence 78999864 33222222445567999999999999999865
No 316
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=35.36 E-value=4.5e+02 Score=25.91 Aligned_cols=94 Identities=12% Similarity=0.075 Sum_probs=63.9
Q ss_pred cccCCHHHHHHHHHHHHHcCCEEEEEecC--------CCCc---chHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhC
Q 043397 416 VAQKGLHLITHAIKRAEELGGQMILLGNS--------PVHW---VQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAA 484 (596)
Q Consensus 416 ~~~KGi~~ll~A~~~l~~~~~~lvIvG~~--------~~g~---~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~a 484 (596)
..-..-+.+++.++.+++.+++++..|.- -.|. ....+.+.++++|+ -.+..-.+.+++..+...+
T Consensus 23 C~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl---~~~Tev~d~~~v~~~~e~v 99 (250)
T PRK13397 23 CSIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGL---LSVSEIMSERQLEEAYDYL 99 (250)
T ss_pred CccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCC---CEEEeeCCHHHHHHHHhcC
Confidence 33455678888888887778888877751 0121 23456666777776 3555667777777777889
Q ss_pred CEEEEcCCC-CCCchHHHHHH-hcCCceEEeC
Q 043397 485 DIVLVPSIY-EPCGLAQMIGM-RYGAVPVVRK 514 (596)
Q Consensus 485 Di~l~PS~~-E~~gl~~lEAm-a~G~pvI~s~ 514 (596)
|++=+||+. -. ..+++++ ..|+||+.+.
T Consensus 100 dilqIgs~~~~n--~~LL~~va~tgkPVilk~ 129 (250)
T PRK13397 100 DVIQVGARNMQN--FEFLKTLSHIDKPILFKR 129 (250)
T ss_pred CEEEECcccccC--HHHHHHHHccCCeEEEeC
Confidence 999999975 33 4556555 5688888865
No 317
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=35.36 E-value=1.6e+02 Score=30.34 Aligned_cols=104 Identities=13% Similarity=0.159 Sum_probs=68.0
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEe-ccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEe
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILL-MYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVR 513 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g-~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s 513 (596)
+..|+|+|+ +...+.+|=+.+. -|...| +-..+++.++-..-++=++.+.|++|-.+-+---|.----|=.
T Consensus 114 ~g~LlIVGn------R~~iq~lAL~~~~--AVLvTGGF~~s~evi~lAne~~lPvlstsYDTFTVAtmIN~Al~n~lIKk 185 (432)
T COG4109 114 PGGLLIVGN------REDIQLLALENGN--AVLVTGGFDVSDEVIKLANEKGLPVLSTSYDTFTVATMINKALSNQLIKK 185 (432)
T ss_pred CCceEEEec------HHHHHHHHHhcCC--eEEEeCCCCccHHHHHhhcccCCceEEecccceeHHHHHHHHHHHhhhhh
Confidence 558999998 5666666644332 377775 5557778888888888899999999977655433333223444
Q ss_pred CCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHH
Q 043397 514 KTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDR 553 (596)
Q Consensus 514 ~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ 553 (596)
++--..|+.... ...+++.+.+..+++.+..++
T Consensus 186 dI~~Vedi~~P~-------~~~~yL~~~d~v~d~~~l~~k 218 (432)
T COG4109 186 DIITVEDIMTPL-------EDTSYLRETDTVEDWLDLVEK 218 (432)
T ss_pred heeeHHHhcccc-------ccceeccccccHHHHHHHHHH
Confidence 544455555432 258888887667777665543
No 318
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=35.32 E-value=1.5e+02 Score=27.25 Aligned_cols=41 Identities=34% Similarity=0.302 Sum_probs=28.6
Q ss_pred HHHHHHhCCEEEE--cCCCCC---CchHHHHHHhcCCceEEeCCCC
Q 043397 477 SHMLYAAADIVLV--PSIYEP---CGLAQMIGMRYGAVPVVRKTGG 517 (596)
Q Consensus 477 l~~~~a~aDi~l~--PS~~E~---~gl~~lEAma~G~pvI~s~~gg 517 (596)
+.++++.||++++ |..-++ ++-..++.|--|.-+|-...|+
T Consensus 85 l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~ 130 (178)
T PF02826_consen 85 LDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGE 130 (178)
T ss_dssp HHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGG
T ss_pred hhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchh
Confidence 6788999999875 444454 4456888898897666666665
No 319
>PRK10037 cell division protein; Provisional
Probab=35.07 E-value=50 Score=32.38 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=25.9
Q ss_pred eeEEEEeecccccccccCHHH--HHhHHHHHHHhcCCeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLGD--VVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~--~~~~La~aL~~~Gh~V~vi~ 149 (596)
|||+-+.. ..||+|. .+.+||.+|+++|++|.++=
T Consensus 1 ~~~iav~n------~KGGvGKTT~a~nLA~~La~~G~rVLlID 37 (250)
T PRK10037 1 MAILGLQG------VRGGVGTTSITAALAWSLQMLGENVLVID 37 (250)
T ss_pred CcEEEEec------CCCCccHHHHHHHHHHHHHhcCCcEEEEe
Confidence 56554432 4577765 56789999999999999983
No 320
>PRK00170 azoreductase; Reviewed
Probab=34.87 E-value=63 Score=30.27 Aligned_cols=39 Identities=8% Similarity=0.049 Sum_probs=26.7
Q ss_pred ceeEEEEeecccccccccCHH-HHHhHHHHHHHhc--CCeEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGGLG-DVVTGLARACLSR--GHTVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~-~~~~~La~aL~~~--Gh~V~vi~ 149 (596)
+|||++|.....+ .+|.. ..+..+.+.+.++ ||+|.++-
T Consensus 1 Mmkil~i~gSpr~---~~s~s~~l~~~~~~~l~~~~~~~~v~~~d 42 (201)
T PRK00170 1 MSKVLVIKSSILG---DYSQSMQLGDAFIEAYKEAHPDDEVTVRD 42 (201)
T ss_pred CCeEEEEecCCCC---CCcHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 5899999765432 22444 4566677778887 89998874
No 321
>PRK07023 short chain dehydrogenase; Provisional
Probab=34.67 E-value=48 Score=31.98 Aligned_cols=26 Identities=23% Similarity=0.125 Sum_probs=19.7
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+..-..+++.|.+.|++|.++..
T Consensus 8 GasggiG~~ia~~l~~~G~~v~~~~r 33 (243)
T PRK07023 8 GHSRGLGAALAEQLLQPGIAVLGVAR 33 (243)
T ss_pred cCCcchHHHHHHHHHhCCCEEEEEec
Confidence 44455555889999999999988763
No 322
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=34.53 E-value=1.3e+02 Score=29.48 Aligned_cols=97 Identities=19% Similarity=0.115 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEE--EEeccCHHHH---HHHH--HhCCEEEEcC-
Q 043397 420 GLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTR--ILLMYSEELS---HMLY--AAADIVLVPS- 491 (596)
Q Consensus 420 Gi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~--~~g~~~~~~l---~~~~--a~aDi~l~PS- 491 (596)
|.|++.+.++...+.+.++.++|.. .+...+..+.+.+++++ +|. ..|+.+.++- .+.+ +.+|++++--
T Consensus 90 G~dl~~~ll~~~~~~~~~v~llG~~-~~v~~~a~~~l~~~y~l--~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~VglG 166 (243)
T PRK03692 90 GADLWEALMARAGKEGTPVFLVGGK-PEVLAQTEAKLRTQWNV--NIVGSQDGYFTPEQRQALFERIHASGAKIVTVAMG 166 (243)
T ss_pred hHHHHHHHHHHHHhcCCeEEEECCC-HHHHHHHHHHHHHHhCC--EEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEECC
Confidence 8999999998887677899999982 12222233334445533 232 3477754443 3333 3468877642
Q ss_pred --CCCCCchHHHHHHhcCCceEEeCCCCccccc
Q 043397 492 --IYEPCGLAQMIGMRYGAVPVVRKTGGLADTV 522 (596)
Q Consensus 492 --~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i 522 (596)
..|-|-....+-+ +. .+...+||.-|.+
T Consensus 167 ~PkQE~~~~~~~~~~--~~-~v~~gvGg~fD~~ 196 (243)
T PRK03692 167 SPKQEIFMRDCRLVY--PD-ALYMGVGGTYDVF 196 (243)
T ss_pred CcHHHHHHHHHHHhC--CC-CEEEEeCeEEEEe
Confidence 3455433322222 33 3344578877766
No 323
>PLN02712 arogenate dehydrogenase
Probab=34.31 E-value=85 Score=35.83 Aligned_cols=38 Identities=26% Similarity=0.286 Sum_probs=28.9
Q ss_pred ccCCCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 103 EKDSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 103 ~~~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+.++++|||.+|. .|.+-..++++|.+.|++|.++...
T Consensus 47 ~~~~~~~kIgIIG-----------~G~mG~slA~~L~~~G~~V~~~dr~ 84 (667)
T PLN02712 47 PDNTTQLKIAIIG-----------FGNYGQFLAKTLISQGHTVLAHSRS 84 (667)
T ss_pred CccCCCCEEEEEc-----------cCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3466779999982 3555668999999999999887643
No 324
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=34.14 E-value=2.9e+02 Score=26.11 Aligned_cols=100 Identities=12% Similarity=0.070 Sum_probs=58.6
Q ss_pred cCCHHHHHHHHHHHHHcCCEEEEEecCCC--CcchHHHHHHHHHcCCCCcEEEE-eccCHHHHHHHHHhCCEEEEcC---
Q 043397 418 QKGLHLITHAIKRAEELGGQMILLGNSPV--HWVQKDFEDLANLHNKGTSTRIL-LMYSEELSHMLYAAADIVLVPS--- 491 (596)
Q Consensus 418 ~KGi~~ll~A~~~l~~~~~~lvIvG~~~~--g~~~~~l~~~~~~~~~~~~V~~~-g~~~~~~l~~~~a~aDi~l~PS--- 491 (596)
....+.+-+.+......+.+++++..... ..+.+.+.+..+++|........ ...+++++.+.+..||+++++-
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~ 91 (210)
T cd03129 12 AHARPILQDFLARAGGAGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQ 91 (210)
T ss_pred cChHHHHHHHHHHcCCCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcH
Confidence 33344444444444324678888876321 13445566666777764221111 1235677889999999999873
Q ss_pred -----CC-CC-CchHHHHHHhcCCceEEeCCCC
Q 043397 492 -----IY-EP-CGLAQMIGMRYGAVPVVRKTGG 517 (596)
Q Consensus 492 -----~~-E~-~gl~~lEAma~G~pvI~s~~gg 517 (596)
.+ +. .--.+.+....|+|++.+..|.
T Consensus 92 ~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA 124 (210)
T cd03129 92 LRLLSVLRETPLLDAILKRVARGVVIGGTSAGA 124 (210)
T ss_pred HHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHH
Confidence 12 32 2224678888898888876665
No 325
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=33.98 E-value=26 Score=30.60 Aligned_cols=34 Identities=35% Similarity=0.262 Sum_probs=25.2
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
.+|||.+|. .+++...|+++|.+.||+|.-+...
T Consensus 9 ~~l~I~iIG-----------aGrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 9 ARLKIGIIG-----------AGRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp ---EEEEEC-----------TSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred CccEEEEEC-----------CCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 458999993 2566679999999999999887643
No 326
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=33.97 E-value=3.8e+02 Score=24.67 Aligned_cols=110 Identities=12% Similarity=0.144 Sum_probs=58.4
Q ss_pred EEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHh---cCCce
Q 043397 437 QMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMR---YGAVP 510 (596)
Q Consensus 437 ~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma---~G~pv 510 (596)
+++++.+ +......+.......+. .+. ..-+.++....+. ..|++++-... +.-|+.+++.+. ..+|+
T Consensus 2 ~ilivdd--~~~~~~~l~~~L~~~~~--~v~--~~~~~~~~~~~~~~~~~d~illd~~~~~~~g~~~~~~l~~~~~~~pi 75 (222)
T PRK10643 2 KILIVED--DTLLLQGLILALQTEGY--ACD--CASTAREAEALLESGHYSLVVLDLGLPDEDGLHLLRRWRQKKYTLPV 75 (222)
T ss_pred EEEEEeC--CHHHHHHHHHHHHHCCC--EEE--EeCCHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCcE
Confidence 3455554 12333444444444332 122 2234444444443 35777765443 344555555554 34677
Q ss_pred EE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 511 VV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 511 I~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
|+ +..........-.. .|..+++..|.+.+++...+..++..
T Consensus 76 i~ls~~~~~~~~~~~~~-----~ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (222)
T PRK10643 76 LILTARDTLEDRVAGLD-----VGADDYLVKPFALEELHARIRALIRR 118 (222)
T ss_pred EEEECCCCHHHHHHHHh-----cCCCeEEeCCCCHHHHHHHHHHHHhh
Confidence 66 33333222221111 16789999999999999999887753
No 327
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=33.88 E-value=48 Score=33.46 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=23.6
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
|||+++. . |.+-..++..|++.||+|+++..
T Consensus 1 mkI~IiG--------~---G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVG--------A---GAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEEC--------C---CHHHHHHHHHHHHCCCceEEEec
Confidence 7888872 2 44445788888899999999985
No 328
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=33.87 E-value=50 Score=31.73 Aligned_cols=32 Identities=28% Similarity=0.285 Sum_probs=24.0
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
||+++|+ ||.+..-..+++.|.++|++|.++.
T Consensus 1 ~~~~lIt---------Ga~g~iG~~l~~~l~~~g~~v~~~~ 32 (247)
T PRK09730 1 MAIALVT---------GGSRGIGRATALLLAQEGYTVAVNY 32 (247)
T ss_pred CCEEEEe---------CCCchHHHHHHHHHHHCCCEEEEEe
Confidence 5666664 5556666689999999999998754
No 329
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=33.73 E-value=47 Score=34.93 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=28.0
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
..++|+++ ||.|.+-..++++|.+.||+|+++.
T Consensus 97 ~~~~I~Ii----------GG~GlmG~slA~~l~~~G~~V~~~d 129 (374)
T PRK11199 97 DLRPVVIV----------GGKGQLGRLFAKMLTLSGYQVRILE 129 (374)
T ss_pred ccceEEEE----------cCCChhhHHHHHHHHHCCCeEEEeC
Confidence 34688877 7778888899999999999999986
No 330
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=33.72 E-value=60 Score=33.55 Aligned_cols=33 Identities=27% Similarity=0.238 Sum_probs=26.6
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
..||||+. ||.+-.-..++++|.++|++|.++.
T Consensus 9 ~~~~vLVt----------G~~GfIG~~l~~~L~~~G~~V~~~~ 41 (353)
T PLN02896 9 ATGTYCVT----------GATGYIGSWLVKLLLQRGYTVHATL 41 (353)
T ss_pred CCCEEEEE----------CCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 34788876 6667777789999999999999875
No 331
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=33.59 E-value=52 Score=33.09 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=24.2
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
|||+++. .|.+-..++..|++.||+|+++...
T Consensus 1 m~I~IiG-----------~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILG-----------AGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEEC-----------CCHHHHHHHHHHHhCCCeEEEEECC
Confidence 6888872 2445567888899999999999853
No 332
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=33.57 E-value=59 Score=32.08 Aligned_cols=39 Identities=21% Similarity=0.155 Sum_probs=26.3
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccch
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECI 155 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~ 155 (596)
||||+....-.. +.-...|+++|.+ +|+|+|++|..++.
T Consensus 1 M~ILvtNDDGi~-------apGl~aL~~~l~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 1 MNILLTNDDGIN-------AEGINTLAELLSK-YHEVIIVAPENQRS 39 (253)
T ss_pred CeEEEEcCCCCC-------ChhHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 788887544322 2235677888865 57999999875544
No 333
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=33.54 E-value=4.3e+02 Score=28.52 Aligned_cols=116 Identities=19% Similarity=0.152 Sum_probs=77.8
Q ss_pred ccccCCHHHHHHHHHHHHHcCCEEEEEecCCCC--cchHHHHHHHHHcCCCCcEEEEecc--------CHHHHHHHHHhC
Q 043397 415 LVAQKGLHLITHAIKRAEELGGQMILLGNSPVH--WVQKDFEDLANLHNKGTSTRILLMY--------SEELSHMLYAAA 484 (596)
Q Consensus 415 l~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g--~~~~~l~~~~~~~~~~~~V~~~g~~--------~~~~l~~~~a~a 484 (596)
...+.+++.++.+.... +...+.-|- | ...+.+.+.+++.+ +.|.|.- +.-....+++++
T Consensus 57 ~~syl~i~~ii~~a~~~---gadai~pGy---gflsen~~fae~~~~~g----l~fiGP~~~~i~~mgdK~~ar~~~~~a 126 (449)
T COG0439 57 ADSYLNIDAIIAAAEET---GADAIHPGY---GFLSENAAFAEACAEAG----LTFIGPSAEAIRRMGDKITARRLMAKA 126 (449)
T ss_pred hhhhhhHHHHHHHHHhc---CCceEcccc---hhhhCCHHHHHHHHHcC----CeeeCcCHHHHHHhhhHHHHHHHHHHc
Confidence 45577888888877665 677888887 7 66788888888765 7788753 344567788888
Q ss_pred CEEEEcCCCCC---CchHHHHHHhcCCceEE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 485 DIVLVPSIYEP---CGLAQMIGMRYGAVPVV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 485 Di~l~PS~~E~---~gl~~lEAma~G~pvI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
-+-+.|-.... .--..--|-..|-|||. ...|| |+.|.-+- .|.++|.+++..+.+
T Consensus 127 GVP~vpgs~~~~~~~ee~~~~a~~iGyPVivKa~~Gg---------------Gg~G~r~v-~~~~el~~a~~~~~~ 186 (449)
T COG0439 127 GVPVVPGSDGAVADNEEALAIAEEIGYPVIVKAAAGG---------------GGRGMRVV-RNEEELEAAFEAARG 186 (449)
T ss_pred CCCcCCCCCCCcCCHHHHHHHHHHcCCCEEEEECCCC---------------CcccEEEE-CCHHHHHHHHHHHHH
Confidence 88888866211 10112223456889998 33333 34555443 389999999988876
No 334
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=33.47 E-value=75 Score=28.78 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=29.7
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFY 152 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~ 152 (596)
.+||+++.. +-+++++.++..+.+.|.+|.+++|..
T Consensus 2 gl~i~~vGD---------~~~rv~~Sl~~~~~~~g~~~~~~~P~~ 37 (158)
T PF00185_consen 2 GLKIAYVGD---------GHNRVAHSLIELLAKFGMEVVLIAPEG 37 (158)
T ss_dssp TEEEEEESS---------TTSHHHHHHHHHHHHTTSEEEEESSGG
T ss_pred CCEEEEECC---------CCChHHHHHHHHHHHcCCEEEEECCCc
Confidence 368888841 237999999999999999999999865
No 335
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=33.45 E-value=47 Score=31.61 Aligned_cols=27 Identities=30% Similarity=0.242 Sum_probs=22.7
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+|.+..=..|++.|++.||+|.+-...
T Consensus 7 ~GtGniG~alA~~~a~ag~eV~igs~r 33 (211)
T COG2085 7 IGTGNIGSALALRLAKAGHEVIIGSSR 33 (211)
T ss_pred eccChHHHHHHHHHHhCCCeEEEecCC
Confidence 566777779999999999999998644
No 336
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=33.37 E-value=4.3e+02 Score=25.10 Aligned_cols=92 Identities=16% Similarity=0.223 Sum_probs=55.7
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHH-HhCCE
Q 043397 408 LVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLY-AAADI 486 (596)
Q Consensus 408 ~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~-a~aDi 486 (596)
+++=+|.+.... -++...+.+.+|++.+. ....+.+.+.+.+ ...+.|-.+.+++...+ ..+|+
T Consensus 63 ~~iGaGTV~~~~-------~~~~a~~aGA~fivsp~-----~~~~v~~~~~~~~---~~~~~G~~t~~E~~~A~~~Gad~ 127 (206)
T PRK09140 63 ALIGAGTVLSPE-------QVDRLADAGGRLIVTPN-----TDPEVIRRAVALG---MVVMPGVATPTEAFAALRAGAQA 127 (206)
T ss_pred cEEeEEecCCHH-------HHHHHHHcCCCEEECCC-----CCHHHHHHHHHCC---CcEEcccCCHHHHHHHHHcCCCE
Confidence 555666664432 23333345889999886 2344555555533 36778888887776665 55787
Q ss_pred E-EEcCCCCCCchHHHHHHhcC----CceEEeCCCCc
Q 043397 487 V-LVPSIYEPCGLAQMIGMRYG----AVPVVRKTGGL 518 (596)
Q Consensus 487 ~-l~PS~~E~~gl~~lEAma~G----~pvI~s~~gg~ 518 (596)
+ ++|+ ...|...+..+... +|+++ +||+
T Consensus 128 vk~Fpa--~~~G~~~l~~l~~~~~~~ipvva--iGGI 160 (206)
T PRK09140 128 LKLFPA--SQLGPAGIKALRAVLPPDVPVFA--VGGV 160 (206)
T ss_pred EEECCC--CCCCHHHHHHHHhhcCCCCeEEE--ECCC
Confidence 7 5564 45777777766643 55655 4554
No 337
>PRK06932 glycerate dehydrogenase; Provisional
Probab=33.34 E-value=1.1e+02 Score=31.26 Aligned_cols=44 Identities=20% Similarity=0.145 Sum_probs=31.9
Q ss_pred HHHHHHHhCCEEEE--cCCCCC---CchHHHHHHhcCCceEEeCCCCcc
Q 043397 476 LSHMLYAAADIVLV--PSIYEP---CGLAQMIGMRYGAVPVVRKTGGLA 519 (596)
Q Consensus 476 ~l~~~~a~aDi~l~--PS~~E~---~gl~~lEAma~G~pvI~s~~gg~~ 519 (596)
.+.++++.||++++ |...|+ ++-..++.|--|.-.|-+..|++-
T Consensus 190 ~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~V 238 (314)
T PRK06932 190 PFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLV 238 (314)
T ss_pred CHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCcccc
Confidence 37889999999875 444555 445688888888777777777643
No 338
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=33.33 E-value=4.2e+02 Score=26.87 Aligned_cols=90 Identities=17% Similarity=0.196 Sum_probs=59.1
Q ss_pred hhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCc-chHHHHHHHHHcCCCCcEE
Q 043397 389 ICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHW-VQKDFEDLANLHNKGTSTR 467 (596)
Q Consensus 389 ~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~-~~~~l~~~~~~~~~~~~V~ 467 (596)
.+-..+++.+|- -+...|.|+|-..+..=...++.++.++ ++++.+++.. +. ..+++.+.+++.|. .|.
T Consensus 136 aDl~Ti~e~~g~---l~g~~va~vGD~~~~~v~~Sl~~~~a~~---g~~v~~~~P~--~~~~~~~~~~~~~~~G~--~v~ 205 (301)
T TIGR00670 136 LDLYTIYEEFGR---LDGLKIALVGDLKYGRTVHSLAEALTRF---GVEVYLISPE--ELRMPKEILEELKAKGI--KVR 205 (301)
T ss_pred HHHHHHHHHhCC---CCCCEEEEEccCCCCcHHHHHHHHHHHc---CCEEEEECCc--cccCCHHHHHHHHHcCC--EEE
Confidence 345566777773 4568899999765455577788887766 7899999972 32 33455555555432 344
Q ss_pred EEeccCHHHHHHHHHhCCEEEEcCCC
Q 043397 468 ILLMYSEELSHMLYAAADIVLVPSIY 493 (596)
Q Consensus 468 ~~g~~~~~~l~~~~a~aDi~l~PS~~ 493 (596)
+. ++ +.+.++.||++...+..
T Consensus 206 ~~---~d--~~~a~~~aDvvyt~~~~ 226 (301)
T TIGR00670 206 ET---ES--LEEVIDEADVLYVTRIQ 226 (301)
T ss_pred EE---CC--HHHHhCCCCEEEECCcc
Confidence 32 33 56788999999887653
No 339
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=33.24 E-value=57 Score=31.62 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=19.9
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+..-..+++.|.+.|++|.++..
T Consensus 7 Gasg~iG~~la~~l~~~G~~V~~~~r 32 (248)
T PRK10538 7 GATAGFGECITRRFIQQGHKVIATGR 32 (248)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEEC
Confidence 44455555789999999999988864
No 340
>PLN02650 dihydroflavonol-4-reductase
Probab=33.11 E-value=70 Score=33.02 Aligned_cols=34 Identities=24% Similarity=0.186 Sum_probs=27.1
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
+.++||+. ||.+-.-..+++.|.++|++|.++..
T Consensus 4 ~~k~iLVT----------GatGfIGs~l~~~L~~~G~~V~~~~r 37 (351)
T PLN02650 4 QKETVCVT----------GASGFIGSWLVMRLLERGYTVRATVR 37 (351)
T ss_pred CCCEEEEe----------CCcHHHHHHHHHHHHHCCCEEEEEEc
Confidence 45577654 77777778899999999999998764
No 341
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=33.01 E-value=58 Score=30.45 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=27.1
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
+|+||+|- .| ..++++|++.+.+.|++|.|+-.
T Consensus 1 ~~~IL~ID-Ny---------DSFtyNLv~yl~~lg~~v~V~rn 33 (191)
T COG0512 1 MMMILLID-NY---------DSFTYNLVQYLRELGAEVTVVRN 33 (191)
T ss_pred CceEEEEE-Cc---------cchHHHHHHHHHHcCCceEEEEC
Confidence 47899984 23 56889999999999999999863
No 342
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=32.74 E-value=65 Score=30.64 Aligned_cols=33 Identities=30% Similarity=0.492 Sum_probs=27.2
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecccc
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYE 153 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~ 153 (596)
||++| || |.++..-++.|.+.|.+|+|+.|...
T Consensus 11 ~vlVv----------Gg-G~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 11 AVLVV----------GG-GDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred eEEEE----------Cc-CHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 77776 55 77888899999999999999987543
No 343
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=32.70 E-value=52 Score=33.87 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=24.9
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
+|||+++. .|.+-..+|..|.+.||+|+++..
T Consensus 2 ~mkI~IiG-----------~G~mG~~~A~~L~~~G~~V~~~~r 33 (341)
T PRK08229 2 MARICVLG-----------AGSIGCYLGGRLAAAGADVTLIGR 33 (341)
T ss_pred CceEEEEC-----------CCHHHHHHHHHHHhcCCcEEEEec
Confidence 58899883 244555788889999999999874
No 344
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=32.63 E-value=70 Score=32.82 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=29.8
Q ss_pred ceeEEEEeecccccccccCHHH--HHhHHHHHHHhcCCeEEEEec
Q 043397 108 LMHIIHITAEMAPIAKVGGLGD--VVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~--~~~~La~aL~~~Gh~V~vi~p 150 (596)
++||++++ ..||+|. .+..+|..|++.|..|.+++.
T Consensus 1 ~~riv~f~-------GKGGVGKTT~aaA~A~~lA~~g~kvLlvSt 38 (322)
T COG0003 1 MTRIVFFT-------GKGGVGKTTIAAATAVKLAESGKKVLLVST 38 (322)
T ss_pred CcEEEEEe-------cCCcccHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 37889887 6799998 777888999999988888863
No 345
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=32.53 E-value=1.3e+02 Score=30.74 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=29.8
Q ss_pred HHHHHHHhCCEEEE--cCCCCCC---chHHHHHHhcCCceEEeCCCCc
Q 043397 476 LSHMLYAAADIVLV--PSIYEPC---GLAQMIGMRYGAVPVVRKTGGL 518 (596)
Q Consensus 476 ~l~~~~a~aDi~l~--PS~~E~~---gl~~lEAma~G~pvI~s~~gg~ 518 (596)
.+.++++.||++++ |..-|+- +-..++.|--|.-.|-+..|++
T Consensus 189 ~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~v 236 (311)
T PRK08410 189 SLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGI 236 (311)
T ss_pred cHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccc
Confidence 47889999999875 5445654 4457788877866666666653
No 346
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=32.44 E-value=81 Score=28.76 Aligned_cols=41 Identities=24% Similarity=0.286 Sum_probs=33.4
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecccc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYE 153 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~ 153 (596)
+|+|+-|+.. +.+|=.+.+..+.+.|.++|+.|-++--..+
T Consensus 1 m~~Il~ivG~-----k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 1 MMKILGIVGY-----KNSGKTTLIEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred CCcEEEEEec-----CCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence 5888888642 5688899999999999999999999864333
No 347
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=32.37 E-value=73 Score=28.00 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=27.5
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEE
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIM 148 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi 148 (596)
|||+++-.. ..|-.+.++..+++.+...|++|.++
T Consensus 1 M~i~IiY~S-----~tGnTe~iA~~ia~~l~~~g~~v~~~ 35 (140)
T TIGR01754 1 MRILLAYLS-----LSGNTEEVAFMIQDYLQKDGHEVDIL 35 (140)
T ss_pred CeEEEEEEC-----CCChHHHHHHHHHHHHhhCCeeEEec
Confidence 677776322 46888999999999999999998743
No 348
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=32.18 E-value=53 Score=32.92 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=23.1
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||.|-.-..|++.|.++||+|..+...
T Consensus 7 G~tGfiG~~l~~~L~~~g~~V~~~~r~ 33 (314)
T COG0451 7 GGAGFIGSHLVERLLAAGHDVRGLDRL 33 (314)
T ss_pred cCcccHHHHHHHHHHhCCCeEEEEeCC
Confidence 666777789999999999999999854
No 349
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=32.12 E-value=77 Score=32.04 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=22.2
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+-.-..+++.|.++||+|.++..
T Consensus 11 GatGfIG~~l~~~L~~~g~~V~~~~r 36 (322)
T PLN02662 11 GASGYIASWLVKLLLQRGYTVKATVR 36 (322)
T ss_pred CChHHHHHHHHHHHHHCCCEEEEEEc
Confidence 77777778899999999999988764
No 350
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=32.11 E-value=63 Score=31.70 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=27.9
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccch
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECI 155 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~ 155 (596)
||||+.... |=.+.-...|+++|.+.| +|+|+.|..++.
T Consensus 1 M~ILltNDD-------Gi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~S 39 (244)
T TIGR00087 1 MKILLTNDD-------GIHSPGIRALYQALKELG-EVTVVAPARQRS 39 (244)
T ss_pred CeEEEECCC-------CCCCHhHHHHHHHHHhCC-CEEEEeCCCCcc
Confidence 789876433 222455678889999888 999999875543
No 351
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=31.89 E-value=91 Score=30.12 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=44.6
Q ss_pred EEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHH----HcCCCCcEEEEeccCHHHHHHHHHhCC
Q 043397 410 VCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLAN----LHNKGTSTRILLMYSEELSHMLYAAAD 485 (596)
Q Consensus 410 l~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~----~~~~~~~V~~~g~~~~~~l~~~~a~aD 485 (596)
..+--++|.|- +..-+.++.+.+.+...+++|+ .+|-..+.+.+..+ +.++ +-+.|.|..+. +...+|
T Consensus 17 ~H~tliDP~k~-~~~~ei~~~~~~~GTDaImIGG-S~gvt~~~~~~~v~~ik~~~~l-PvilfP~~~~~-----is~~aD 88 (240)
T COG1646 17 RHLTLIDPDKT-EEADEIAEAAAEAGTDAIMIGG-SDGVTEENVDNVVEAIKERTDL-PVILFPGSPSG-----ISPYAD 88 (240)
T ss_pred eEEEEeCcccc-cccHHHHHHHHHcCCCEEEECC-cccccHHHHHHHHHHHHhhcCC-CEEEecCChhc-----cCccCC
Confidence 44456788874 3444444444445788999998 34444344444333 3332 34555555443 556999
Q ss_pred EEEEcCCC
Q 043397 486 IVLVPSIY 493 (596)
Q Consensus 486 i~l~PS~~ 493 (596)
.+++||..
T Consensus 89 avff~svL 96 (240)
T COG1646 89 AVFFPSVL 96 (240)
T ss_pred eEEEEEEe
Confidence 99999863
No 352
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=31.86 E-value=3.7e+02 Score=23.87 Aligned_cols=97 Identities=20% Similarity=0.205 Sum_probs=59.1
Q ss_pred EEEEEecccccCCHHHHHHHHH--HHHHc-CCEEEE-EecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh
Q 043397 408 LVVCITRLVAQKGLHLITHAIK--RAEEL-GGQMIL-LGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA 483 (596)
Q Consensus 408 ~il~iGrl~~~KGi~~ll~A~~--~l~~~-~~~lvI-vG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~ 483 (596)
.++.+|.- ..++..++.-.+ .+.+. ..++++ .|+ |.+.. . ...++.|+...+++..+...
T Consensus 2 ifVTvGst--f~~f~rlv~k~e~~el~~~i~e~lIvQyGn---~d~kp----------v-agl~v~~F~~~~kiQsli~d 65 (161)
T COG5017 2 IFVTVGST--FYPFNRLVLKIEVLELTELIQEELIVQYGN---GDIKP----------V-AGLRVYGFDKEEKIQSLIHD 65 (161)
T ss_pred eEEEecCc--cchHHHHHhhHHHHHHHHHhhhheeeeecC---CCccc----------c-cccEEEeechHHHHHHHhhc
Confidence 45677764 445554444322 11111 235544 676 54432 1 13788999999999999999
Q ss_pred CCEEEEcCCCCCCchHHHHHHhcCCceEEe-CCCCccccccc
Q 043397 484 ADIVLVPSIYEPCGLAQMIGMRYGAVPVVR-KTGGLADTVFD 524 (596)
Q Consensus 484 aDi~l~PS~~E~~gl~~lEAma~G~pvI~s-~~gg~~e~i~~ 524 (596)
|.+++.= .-+| +++-++..++|.|+. +..-..|+++|
T Consensus 66 arIVISH-aG~G---SIL~~~rl~kplIv~pr~s~y~elvDd 103 (161)
T COG5017 66 ARIVISH-AGEG---SILLLLRLDKPLIVVPRSSQYQELVDD 103 (161)
T ss_pred ceEEEec-cCcc---hHHHHhhcCCcEEEEECchhHHHhhhh
Confidence 9966621 1233 678889999999884 44445666644
No 353
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=31.83 E-value=59 Score=31.53 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=18.6
Q ss_pred ccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 124 VGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 124 ~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
+|++|. .|+++|.++||+|++++
T Consensus 25 SG~iG~---aLA~~L~~~G~~V~li~ 47 (229)
T PRK06732 25 TGQLGK---IIAETFLAAGHEVTLVT 47 (229)
T ss_pred chHHHH---HHHHHHHhCCCEEEEEE
Confidence 454554 78999999999999987
No 354
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=31.82 E-value=98 Score=30.76 Aligned_cols=36 Identities=19% Similarity=0.091 Sum_probs=28.1
Q ss_pred HhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC
Q 043397 482 AAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG 517 (596)
Q Consensus 482 a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg 517 (596)
..+|+++.-|.-+..--.+..|+.+|+|+|+..+|-
T Consensus 67 ~~~DvVIdfT~p~~~~~~~~~al~~g~~vVigttg~ 102 (266)
T TIGR00036 67 TDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGF 102 (266)
T ss_pred CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCCC
Confidence 568999987765555557889999999999966653
No 355
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=31.63 E-value=1.1e+02 Score=30.25 Aligned_cols=62 Identities=16% Similarity=0.135 Sum_probs=38.0
Q ss_pred HHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeC
Q 043397 477 SHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEG 541 (596)
Q Consensus 477 l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~ 541 (596)
+.++++.+|+++.-+..+...-.+..|+..|+|+|+..+|--.+-+..... .. ...++++.+
T Consensus 54 l~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~--aa-~~~~v~~s~ 115 (257)
T PRK00048 54 LEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEE--AA-KKIPVVIAP 115 (257)
T ss_pred HHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHH--Hh-cCCCEEEEC
Confidence 555667899999666544444467788999999998765543332221111 11 345666665
No 356
>PRK07102 short chain dehydrogenase; Provisional
Probab=31.54 E-value=59 Score=31.32 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=21.6
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||.+..-..+++.|.++|++|.++...
T Consensus 8 Gas~giG~~~a~~l~~~G~~Vi~~~r~ 34 (243)
T PRK07102 8 GATSDIARACARRYAAAGARLYLAARD 34 (243)
T ss_pred cCCcHHHHHHHHHHHhcCCEEEEEeCC
Confidence 555666678999999999999888644
No 357
>PRK08177 short chain dehydrogenase; Provisional
Probab=31.53 E-value=61 Score=30.87 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=20.5
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||.+..-..+++.|++.|++|.++...
T Consensus 8 G~sg~iG~~la~~l~~~G~~V~~~~r~ 34 (225)
T PRK08177 8 GASRGLGLGLVDRLLERGWQVTATVRG 34 (225)
T ss_pred CCCchHHHHHHHHHHhCCCEEEEEeCC
Confidence 444555557899999999999988744
No 358
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=31.16 E-value=2e+02 Score=22.85 Aligned_cols=53 Identities=17% Similarity=0.091 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHH
Q 043397 419 KGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSH 478 (596)
Q Consensus 419 KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~ 478 (596)
-|.+..++++++ ...+++|+..+.+......+..+++.+++. +.+.+ +.+++-
T Consensus 14 ~G~~~v~kai~~---gkaklViiA~D~~~~~~~~i~~~c~~~~Vp--~~~~~--s~~eLG 66 (82)
T PRK13602 14 IGTKQTVKALKR---GSVKEVVVAEDADPRLTEKVEALANEKGVP--VSKVD--SMKKLG 66 (82)
T ss_pred EcHHHHHHHHHc---CCeeEEEEECCCCHHHHHHHHHHHHHcCCC--EEEEC--CHHHHH
Confidence 366777777754 467888887755556777888888887653 55544 555553
No 359
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=31.09 E-value=60 Score=33.05 Aligned_cols=33 Identities=27% Similarity=0.267 Sum_probs=25.5
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+|||.++. .|.+-..++..|++.||+|+++...
T Consensus 1 mmkI~iiG-----------~G~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 1 MMKIAVLG-----------AGSWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CCEEEEEC-----------CCHHHHHHHHHHHhCCCEEEEEECC
Confidence 47888882 2556668899999999999988743
No 360
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=31.07 E-value=54 Score=33.17 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=21.1
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+..-..++++|.++||+|.++..
T Consensus 7 G~~G~iG~~l~~~L~~~g~~V~~~~r 32 (328)
T TIGR03466 7 GATGFVGSAVVRLLLEQGEEVRVLVR 32 (328)
T ss_pred CCccchhHHHHHHHHHCCCEEEEEEe
Confidence 55566666899999999999998874
No 361
>PRK06101 short chain dehydrogenase; Provisional
Probab=31.04 E-value=64 Score=31.11 Aligned_cols=26 Identities=19% Similarity=0.097 Sum_probs=20.0
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+-.-..+++.|.++|++|.++..
T Consensus 8 Gas~giG~~la~~L~~~G~~V~~~~r 33 (240)
T PRK06101 8 GATSGIGKQLALDYAKQGWQVIACGR 33 (240)
T ss_pred cCCcHHHHHHHHHHHhCCCEEEEEEC
Confidence 44455556889999999999988764
No 362
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=30.95 E-value=4.1e+02 Score=24.15 Aligned_cols=113 Identities=12% Similarity=0.147 Sum_probs=59.9
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEe-ccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHhc---C
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILL-MYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMRY---G 507 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g-~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma~---G 507 (596)
..+++|+.+. ......+....+.. +.+.+.. .-+.++....+. ..|++++-... +.-|+.+++.+.. .
T Consensus 3 ~~~iliv~d~--~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~l~~~~~~ 77 (210)
T PRK09935 3 PASVIIMDTH--PIIRMSIEVLLQKN---SELQIVLKTDDYRITIDYLRTRPVDLIIMDIDLPGTDGFTFLKRIKQIQST 77 (210)
T ss_pred cceEEEECCc--HHHHHHHHHHHhhC---CCceEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhCCC
Confidence 3566777761 22233344443332 2233322 223333333332 35888776543 4456666666543 4
Q ss_pred CceEE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 508 AVPVV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 508 ~pvI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
+|+|+ ++.........-. ..|..+++..|.+.+.+..+|..++..
T Consensus 78 ~~ii~ls~~~~~~~~~~~~-----~~g~~~~l~kp~~~~~l~~~i~~~l~~ 123 (210)
T PRK09935 78 VKVLFLSSKSECFYAGRAI-----QAGANGFVSKCNDQNDIFHAVQMILSG 123 (210)
T ss_pred CcEEEEECCCcHHHHHHHH-----HcCCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 56665 4433322222111 116789999999999999999887763
No 363
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=30.79 E-value=2.8e+02 Score=27.78 Aligned_cols=92 Identities=8% Similarity=-0.112 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHcCC-EEEEEecCCCC---cchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHH----HhCCEEEEcC
Q 043397 420 GLHLITHAIKRAEELGG-QMILLGNSPVH---WVQKDFEDLANLHNKGTSTRILLMYSEELSHMLY----AAADIVLVPS 491 (596)
Q Consensus 420 Gi~~ll~A~~~l~~~~~-~lvIvG~~~~g---~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~----a~aDi~l~PS 491 (596)
-+..-++.+.++. |+. ++.++-+.... ...+.+++.++++|+. +....--+.+++...+ ...|+++++.
T Consensus 116 ~~~~~l~l~~~l~-P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~--l~~~~v~~~~~~~~~~~~l~~~~da~~~~~ 192 (294)
T PF04392_consen 116 PIEKQLELIKKLF-PDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIE--LVEIPVPSSEDLEQALEALAEKVDALYLLP 192 (294)
T ss_dssp -HHHHHHHHHHHS-TT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-E--EEEEEESSGGGHHHHHHHHCTT-SEEEE-S
T ss_pred CHHHHHHHHHHhC-CCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCE--EEEEecCcHhHHHHHHHHhhccCCEEEEEC
Confidence 3445555555543 333 55344331111 2345666677777763 4433333333444444 4568887775
Q ss_pred CC---CCCchHHHHHHhcCCceEEeC
Q 043397 492 IY---EPCGLAQMIGMRYGAVPVVRK 514 (596)
Q Consensus 492 ~~---E~~gl~~lEAma~G~pvI~s~ 514 (596)
.. ..+...+..+..+++|++++.
T Consensus 193 ~~~~~~~~~~i~~~~~~~~iPv~~~~ 218 (294)
T PF04392_consen 193 DNLVDSNFEAILQLANEAKIPVFGSS 218 (294)
T ss_dssp -HHHHHTHHHHHHHCCCTT--EEESS
T ss_pred CcchHhHHHHHHHHHHhcCCCEEECC
Confidence 42 344445667788999999865
No 364
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=30.72 E-value=70 Score=31.76 Aligned_cols=39 Identities=18% Similarity=0.097 Sum_probs=27.0
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccch
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECI 155 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~ 155 (596)
||||+....-. .+.-...|+++|.+.| +|+|+.|..++.
T Consensus 1 M~ILlTNDDGi-------~apGi~aL~~al~~~g-~V~VvAP~~eqS 39 (266)
T PRK13934 1 MKILVTNDDGV-------HSPGLRLLYEFVSPLG-EVDVVAPETPKS 39 (266)
T ss_pred CeEEEEcCCCC-------CCHHHHHHHHHHHhCC-cEEEEccCCCCc
Confidence 78887754332 2344567888888887 899999875543
No 365
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=30.70 E-value=68 Score=31.51 Aligned_cols=39 Identities=26% Similarity=0.238 Sum_probs=27.4
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccch
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECI 155 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~ 155 (596)
||||+....- . -+.-+..|+++|. .+++|+|++|..++.
T Consensus 1 mrILlTNDDG-i------~a~Gi~aL~~al~-~~~dV~VVAP~~~qS 39 (252)
T COG0496 1 MRILLTNDDG-I------HAPGIRALARALR-EGADVTVVAPDREQS 39 (252)
T ss_pred CeEEEecCCc-c------CCHHHHHHHHHHh-hCCCEEEEccCCCCc
Confidence 7888775433 2 1344567888888 889999999875543
No 366
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=30.54 E-value=48 Score=33.27 Aligned_cols=31 Identities=35% Similarity=0.342 Sum_probs=26.4
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
||||++ |+.|..-..|.++|.+.|++|..++
T Consensus 1 MriLI~----------GasG~lG~~l~~~l~~~~~~v~~~~ 31 (286)
T PF04321_consen 1 MRILIT----------GASGFLGSALARALKERGYEVIATS 31 (286)
T ss_dssp EEEEEE----------TTTSHHHHHHHHHHTTTSEEEEEES
T ss_pred CEEEEE----------CCCCHHHHHHHHHHhhCCCEEEEeC
Confidence 899988 7777888899999999998887774
No 367
>PRK08655 prephenate dehydrogenase; Provisional
Probab=30.51 E-value=60 Score=34.92 Aligned_cols=33 Identities=30% Similarity=0.273 Sum_probs=26.5
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
|||+++ ||.|..-..+++.|.+.||+|.++...
T Consensus 1 MkI~II----------GG~G~mG~slA~~L~~~G~~V~v~~r~ 33 (437)
T PRK08655 1 MKISII----------GGTGGLGKWFARFLKEKGFEVIVTGRD 33 (437)
T ss_pred CEEEEE----------ecCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 678777 666667778999999999999988744
No 368
>PRK05246 glutathione synthetase; Provisional
Probab=30.39 E-value=55 Score=33.43 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=29.5
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
.|||+|+-. |.........-...|+++..++||+|.+++|.
T Consensus 1 ~~~~~~~~~---~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~ 41 (316)
T PRK05246 1 MMKVAFQMD---PIESINIKKDSTFAMMLEAQRRGHELFYYEPD 41 (316)
T ss_pred CceEEEEeC---CHHHCCCCCChHHHHHHHHHHcCCEEEEEehh
Confidence 389999964 33233333344567999999999999999975
No 369
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=30.20 E-value=73 Score=31.39 Aligned_cols=39 Identities=21% Similarity=0.091 Sum_probs=26.3
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccch
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECI 155 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~ 155 (596)
||||+....-. .+.-...|+++|.+ +|+|+|++|..++.
T Consensus 1 M~ILlTNDDGi-------~a~Gi~aL~~~l~~-~~~V~VvAP~~~qS 39 (253)
T PRK13935 1 MNILVTNDDGI-------TSPGIIILAEYLSE-KHEVFVVAPDKERS 39 (253)
T ss_pred CeEEEECCCCC-------CCHHHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 78888754432 13345667788865 57999999876554
No 370
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.20 E-value=69 Score=31.02 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=21.1
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+..-..+++.|.++|++|.++..
T Consensus 9 G~sg~iG~~la~~L~~~g~~vi~~~r 34 (256)
T PRK12745 9 GGRRGIGLGIARALAAAGFDLAINDR 34 (256)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEec
Confidence 66666667899999999999988763
No 371
>PLN00414 glycosyltransferase family protein
Probab=30.01 E-value=82 Score=34.01 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=28.5
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+.+|+++ |++..|=+. =..+||+.|+++|++|+++++.
T Consensus 4 ~~HVvlv-----PfpaqGHi~-PmL~LAk~Las~G~~VT~vtt~ 41 (446)
T PLN00414 4 KFHAFMY-----PWFGFGHMI-PYLHLANKLAEKGHRVTFFLPK 41 (446)
T ss_pred CCEEEEe-----cCcccchHH-HHHHHHHHHHhCCCEEEEEeCC
Confidence 4688888 443445444 4469999999999999999954
No 372
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=29.79 E-value=55 Score=32.03 Aligned_cols=30 Identities=33% Similarity=0.392 Sum_probs=24.6
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEeccccc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPFYEC 154 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~ 154 (596)
||.+..-..++++|.++||+|.+.+.....
T Consensus 7 GatG~~G~~~~~~L~~~~~~v~~~~r~~~~ 36 (275)
T COG0702 7 GATGFVGGAVVRELLARGHEVRAAVRNPEA 36 (275)
T ss_pred ecccchHHHHHHHHHhCCCEEEEEEeCHHH
Confidence 677777778999999999999999965443
No 373
>PLN00198 anthocyanidin reductase; Provisional
Probab=29.71 E-value=88 Score=32.01 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=21.7
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+-.-..|+++|.++||+|.++..
T Consensus 16 G~~GfIG~~l~~~L~~~g~~V~~~~r 41 (338)
T PLN00198 16 GGTGFLASLLIKLLLQKGYAVNTTVR 41 (338)
T ss_pred CCchHHHHHHHHHHHHCCCEEEEEEC
Confidence 77777777899999999999987763
No 374
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=29.71 E-value=5.6e+02 Score=25.35 Aligned_cols=38 Identities=24% Similarity=0.250 Sum_probs=28.9
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
..+++.+++.-+. -|-++.+.+||.+++++|.+|-++=
T Consensus 56 ~~~~I~V~S~kgG----vGKStva~nLA~alA~~G~rVlliD 93 (265)
T COG0489 56 VKNVIAVTSGKGG----VGKSTVAVNLAAALAQLGKRVLLLD 93 (265)
T ss_pred cceEEEEEeCCCC----CcHHHHHHHHHHHHHhcCCcEEEEe
Confidence 5677777654422 3557888999999999999998885
No 375
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=29.63 E-value=4.5e+02 Score=25.06 Aligned_cols=83 Identities=14% Similarity=0.140 Sum_probs=50.0
Q ss_pred cCCEEEEEecCCC--CcchHHHHHHHHHcCCCCcEEEEecc-----CHHHHHHHHHhCCEEEEcC--------CCCCCch
Q 043397 434 LGGQMILLGNSPV--HWVQKDFEDLANLHNKGTSTRILLMY-----SEELSHMLYAAADIVLVPS--------IYEPCGL 498 (596)
Q Consensus 434 ~~~~lvIvG~~~~--g~~~~~l~~~~~~~~~~~~V~~~g~~-----~~~~l~~~~a~aDi~l~PS--------~~E~~gl 498 (596)
.+.+++++..... ..+.+.+.+..+++|.. .+.++... +++++.+.+..||++++.- .+...++
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~-~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l 106 (217)
T cd03145 28 AGARIVVIPAASEEPAEVGEEYRDVFERLGAR-EVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPL 106 (217)
T ss_pred CCCcEEEEeCCCcChhHHHHHHHHHHHHcCCc-eeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChH
Confidence 4567777765311 12334455555667653 44554433 4666788899999988752 1223333
Q ss_pred --HHHHHHhcCCceEEeCCCC
Q 043397 499 --AQMIGMRYGAVPVVRKTGG 517 (596)
Q Consensus 499 --~~lEAma~G~pvI~s~~gg 517 (596)
.+-++...|+|++.+..|.
T Consensus 107 ~~~l~~~~~~G~v~~G~SAGA 127 (217)
T cd03145 107 LDALRKVYRGGVVIGGTSAGA 127 (217)
T ss_pred HHHHHHHHHcCCEEEEccHHH
Confidence 4567788898888766554
No 376
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=29.62 E-value=93 Score=33.63 Aligned_cols=41 Identities=15% Similarity=0.348 Sum_probs=31.0
Q ss_pred CCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccc
Q 043397 106 SNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFY 152 (596)
Q Consensus 106 ~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~ 152 (596)
+.+++|+++ |++..|=+..+ .+||+.|+.+|+.|+++++..
T Consensus 5 ~~~~HVvlv-----PfpaqGHi~P~-l~LAk~La~~G~~VT~v~T~~ 45 (451)
T PLN02410 5 PARRRVVLV-----PVPAQGHISPM-MQLAKTLHLKGFSITIAQTKF 45 (451)
T ss_pred CCCCEEEEE-----CCCccccHHHH-HHHHHHHHcCCCEEEEEeCcc
Confidence 355799988 44455665555 599999999999999998653
No 377
>PLN02686 cinnamoyl-CoA reductase
Probab=29.49 E-value=85 Score=32.77 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.0
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+-.-..+++.|.++||+|.++..
T Consensus 60 GatGfIG~~lv~~L~~~G~~V~~~~r 85 (367)
T PLN02686 60 GGVSFLGLAIVDRLLRHGYSVRIAVD 85 (367)
T ss_pred CCchHHHHHHHHHHHHCCCEEEEEeC
Confidence 77777778899999999999988753
No 378
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=29.47 E-value=2.1e+02 Score=26.03 Aligned_cols=65 Identities=15% Similarity=0.080 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHcCC-EEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEc
Q 043397 420 GLHLITHAIKRAEELGG-QMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVP 490 (596)
Q Consensus 420 Gi~~ll~A~~~l~~~~~-~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~P 490 (596)
.+.+.++|++.+..+++ .++++.+ |+... .+...+++.|. +|...|.- ...-..+.++||-|+.-
T Consensus 90 Dv~laIDame~~~~~~iD~~vLvSg--D~DF~-~Lv~~lre~G~--~V~v~g~~-~~ts~~L~~acd~FI~L 155 (160)
T TIGR00288 90 DVRMAVEAMELIYNPNIDAVALVTR--DADFL-PVINKAKENGK--ETIVIGAE-PGFSTALQNSADIAIIL 155 (160)
T ss_pred cHHHHHHHHHHhccCCCCEEEEEec--cHhHH-HHHHHHHHCCC--EEEEEeCC-CCChHHHHHhcCeEEeC
Confidence 47889999988755555 4444433 15443 34444445454 58888832 12234678999988753
No 379
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=29.28 E-value=69 Score=32.56 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=25.0
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
.|||+++. .|++|.+ ++-.|.+.|++|+++...
T Consensus 2 ~m~I~IiG--------aGaiG~~---~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILG--------AGSLGSL---WACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEEC--------CCHHHHH---HHHHHHhCCCCeEEEEec
Confidence 58999983 4777764 455577889999999864
No 380
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=29.15 E-value=78 Score=31.18 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=27.6
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccch
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECI 155 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~ 155 (596)
||||+....-. .+.-...|+++|.+. |+|+|++|..++.
T Consensus 1 M~ILlTNDDGi-------~a~Gi~aL~~~l~~~-~~V~VvAP~~~qS 39 (250)
T PRK00346 1 MRILLTNDDGI-------HAPGIRALAEALREL-ADVTVVAPDRERS 39 (250)
T ss_pred CeEEEECCCCC-------CChhHHHHHHHHHhC-CCEEEEeCCCCCc
Confidence 78888754332 134466788888888 7999999875543
No 381
>PRK06753 hypothetical protein; Provisional
Probab=29.12 E-value=66 Score=33.44 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=22.0
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
|+|++|. ||.+ =..+|.+|+++|++|+|+=
T Consensus 1 ~~V~IvG---------gG~a--Gl~~A~~L~~~g~~v~v~E 30 (373)
T PRK06753 1 MKIAIIG---------AGIG--GLTAAALLQEQGHEVKVFE 30 (373)
T ss_pred CEEEEEC---------CCHH--HHHHHHHHHhCCCcEEEEe
Confidence 6888883 3333 3456888999999999984
No 382
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=29.09 E-value=56 Score=30.52 Aligned_cols=30 Identities=37% Similarity=0.252 Sum_probs=21.1
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
|||.++.. +.+-.-+|..|++.||+|..+=
T Consensus 1 M~I~ViGl-----------GyvGl~~A~~lA~~G~~V~g~D 30 (185)
T PF03721_consen 1 MKIAVIGL-----------GYVGLPLAAALAEKGHQVIGVD 30 (185)
T ss_dssp -EEEEE-------------STTHHHHHHHHHHTTSEEEEE-
T ss_pred CEEEEECC-----------CcchHHHHHHHHhCCCEEEEEe
Confidence 78888743 3444578899999999999985
No 383
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=29.07 E-value=1.1e+02 Score=28.79 Aligned_cols=39 Identities=18% Similarity=0.107 Sum_probs=27.5
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHh-cCCeEEEEe
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLS-RGHTVDIML 149 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~-~Gh~V~vi~ 149 (596)
..|||+.++..- ..-|-.+.+.+||.+|++ .|++|-++=
T Consensus 33 ~~~~vi~v~s~k----gG~GkSt~a~nLA~~la~~~g~~VLlvD 72 (207)
T TIGR03018 33 KNNNLIMVTSSL----PGEGKSFTAINLAISLAQEYDKTVLLID 72 (207)
T ss_pred CCCeEEEEECCC----CCCCHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 457766665322 123556778889999997 699999884
No 384
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=28.97 E-value=89 Score=30.17 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=23.4
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecccc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPFYE 153 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~~~ 153 (596)
|| |.++..=++.|.+.|-+|+|++|...
T Consensus 32 GG-G~VA~RK~~~Ll~~gA~VtVVap~i~ 59 (223)
T PRK05562 32 GG-GKAAFIKGKTFLKKGCYVYILSKKFS 59 (223)
T ss_pred CC-CHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 66 77778888999999999999998643
No 385
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=28.92 E-value=4.6e+02 Score=24.10 Aligned_cols=110 Identities=10% Similarity=0.146 Sum_probs=60.8
Q ss_pred EEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHhc-----CC
Q 043397 437 QMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMRY-----GA 508 (596)
Q Consensus 437 ~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma~-----G~ 508 (596)
+++|+.+. ....+.+....+..+ ..+....+.++....+. ..|++++-... ..-|+.+++.+.. .+
T Consensus 4 ~ilivdd~--~~~~~~l~~~L~~~~----~~v~~~~~~~~~~~~~~~~~~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~ 77 (226)
T TIGR02154 4 RILVVEDE--PAIRELIAYNLEKAG----YDVVEAGDGDEALTLINERGPDLILLDWMLPGTSGIELCRRLRRRPETRAI 77 (226)
T ss_pred eEEEEeCC--HHHHHHHHHHHHHCC----CEEEEEcCHHHHHHHHHhcCCCEEEEECCCCCCcHHHHHHHHHccccCCCC
Confidence 55666651 223344444444332 22233344444545553 36888876544 3456666666642 46
Q ss_pred ceEE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 509 VPVV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 509 pvI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
|+|+ +..........-. ..|..+++..|.+.+++..+|..++..
T Consensus 78 ~ii~ls~~~~~~~~~~~~-----~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (226)
T TIGR02154 78 PIIMLTARGEEEDRVRGL-----ETGADDYITKPFSPRELLARIKAVLRR 122 (226)
T ss_pred CEEEEecCCCHHHHHHHH-----hcCcceEEeCCCCHHHHHHHHHHHhcc
Confidence 6666 3333222222111 116789999999999999999888753
No 386
>PLN02583 cinnamoyl-CoA reductase
Probab=28.88 E-value=76 Score=31.91 Aligned_cols=26 Identities=35% Similarity=0.291 Sum_probs=21.5
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+..-..+++.|.++||+|.++..
T Consensus 13 GatG~IG~~lv~~Ll~~G~~V~~~~R 38 (297)
T PLN02583 13 DASGYVGFWLVKRLLSRGYTVHAAVQ 38 (297)
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEEEc
Confidence 66666677899999999999998764
No 387
>PRK06953 short chain dehydrogenase; Provisional
Probab=28.83 E-value=63 Score=30.70 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=20.3
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+..-..+++.|.+.|++|.++..
T Consensus 8 G~sg~iG~~la~~L~~~G~~v~~~~r 33 (222)
T PRK06953 8 GASRGIGREFVRQYRADGWRVIATAR 33 (222)
T ss_pred cCCCchhHHHHHHHHhCCCEEEEEEC
Confidence 55556666889999999999988763
No 388
>PRK12827 short chain dehydrogenase; Provisional
Probab=28.73 E-value=74 Score=30.53 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=19.1
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
||.+-.-..+++.|.++||+|.++.
T Consensus 13 Gasg~iG~~la~~l~~~g~~v~~~~ 37 (249)
T PRK12827 13 GGSGGLGRAIAVRLAADGADVIVLD 37 (249)
T ss_pred CCCChHHHHHHHHHHHCCCeEEEEc
Confidence 4444445588999999999998875
No 389
>PRK05993 short chain dehydrogenase; Provisional
Probab=28.63 E-value=77 Score=31.40 Aligned_cols=27 Identities=26% Similarity=0.047 Sum_probs=20.1
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||.+..-..+++.|+++|++|.++...
T Consensus 11 GasggiG~~la~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 11 GCSSGIGAYCARALQSDGWRVFATCRK 37 (277)
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 444445557899999999999888643
No 390
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=28.63 E-value=73 Score=32.90 Aligned_cols=26 Identities=27% Similarity=0.129 Sum_probs=23.1
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.|-.-..|++.|.++|++|..+..
T Consensus 22 GatGfiG~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 22 GVAGFIGSGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred CCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 88888888999999999999988863
No 391
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=28.57 E-value=4.6e+02 Score=24.02 Aligned_cols=66 Identities=14% Similarity=0.089 Sum_probs=42.3
Q ss_pred hCCEEEEcCCC-CCCchHHHHHHhc---CCceEE-eCCCCcc---ccccccCCCCCCCccceEEEeCCCHHHHHHHHHHH
Q 043397 483 AADIVLVPSIY-EPCGLAQMIGMRY---GAVPVV-RKTGGLA---DTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRA 554 (596)
Q Consensus 483 ~aDi~l~PS~~-E~~gl~~lEAma~---G~pvI~-s~~gg~~---e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~l 554 (596)
..|++++-... ..-|+.+++.+.. .+|+|. +...... +.+.. |..+++..|.+.+++..++..+
T Consensus 44 ~~dlvild~~l~~~~g~~~~~~i~~~~~~~~ii~lt~~~~~~~~~~~~~~--------ga~~~i~kp~~~~~l~~~i~~~ 115 (219)
T PRK10336 44 PYDAVILDLTLPGMDGRDILREWREKGQREPVLILTARDALAERVEGLRL--------GADDYLCKPFALIEVAARLEAL 115 (219)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHhC--------CCCeEEECCCCHHHHHHHHHHH
Confidence 35888776543 3446666665543 456665 3333322 22223 6789999999999999999888
Q ss_pred HH
Q 043397 555 FR 556 (596)
Q Consensus 555 l~ 556 (596)
+.
T Consensus 116 ~~ 117 (219)
T PRK10336 116 MR 117 (219)
T ss_pred Hh
Confidence 75
No 392
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.43 E-value=78 Score=30.24 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=20.4
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||.+..-..+++.|.++||+|.+++..
T Consensus 13 Gasg~iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 13 GAARGLGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 555556668899999999999776643
No 393
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=28.35 E-value=1.2e+02 Score=34.55 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=25.3
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
++|||++++. | .--...+......|.++||+|+|++-.
T Consensus 369 ~~rvLv~spH--P----DDevi~~GGTlarl~~~G~~V~vv~~T 406 (652)
T PRK02122 369 PKRVIIFSPH--P----DDDVISMGGTFRRLVEQGHDVHVAYQT 406 (652)
T ss_pred CceEEEEEeC--C----CchHhhhHHHHHHHHHCCCcEEEEEec
Confidence 4799999853 3 222333444556788899999998743
No 394
>PLN02342 ornithine carbamoyltransferase
Probab=28.34 E-value=6.9e+02 Score=25.95 Aligned_cols=128 Identities=12% Similarity=-0.077 Sum_probs=0.0
Q ss_pred cccCeEE--EeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcC
Q 043397 322 VYSNAVV--TVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLG 399 (596)
Q Consensus 322 ~~ad~vi--~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~ 399 (596)
+++|.|+ +.+....+++.+ ...+-||.-|-+ ...|. .-..+--.+++++|
T Consensus 139 ~y~D~IviR~~~~~~~~~la~-----------~~~vPVINA~~~--~~HPt---------------QaLaDl~Ti~e~~G 190 (348)
T PLN02342 139 RYNDIIMARVFAHQDVLDLAE-----------YSSVPVINGLTD--YNHPC---------------QIMADALTIIEHIG 190 (348)
T ss_pred HhCCEEEEeCCChHHHHHHHH-----------hCCCCEEECCCC--CCChH---------------HHHHHHHHHHHHhC
Q ss_pred CCCCCCccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHH
Q 043397 400 LKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHM 479 (596)
Q Consensus 400 l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~ 479 (596)
- -+...|+++|-... =...++.++.++ ++++.+++. ..=...+++.+.+++.+. .++.+...+.+
T Consensus 191 ~---l~glkva~vGD~~n--va~Sli~~~~~~---G~~v~~~~P-~~~~~~~~~~~~a~~~g~-~~~~~~~d~~e----- 255 (348)
T PLN02342 191 R---LEGTKVVYVGDGNN--IVHSWLLLAAVL---PFHFVCACP-KGYEPDAKTVEKARAAGI-SKIEITNDPAE----- 255 (348)
T ss_pred C---cCCCEEEEECCCch--hHHHHHHHHHHc---CCEEEEECC-cccccCHHHHHHHHHhCC-CcEEEEcCHHH-----
Q ss_pred HHHhCCEEEEcCC
Q 043397 480 LYAAADIVLVPSI 492 (596)
Q Consensus 480 ~~a~aDi~l~PS~ 492 (596)
.++.||++...++
T Consensus 256 av~~aDVvy~~~W 268 (348)
T PLN02342 256 AVKGADVVYTDVW 268 (348)
T ss_pred HhCCCCEEEECCc
No 395
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=28.33 E-value=1.8e+02 Score=26.81 Aligned_cols=92 Identities=17% Similarity=0.073 Sum_probs=42.2
Q ss_pred HHHHHHHHHHH-HHcCCEEEEEecC---------------CCCcchHHHHHHHHHcCCCCcEEEEeccC----HHHHHHH
Q 043397 421 LHLITHAIKRA-EELGGQMILLGNS---------------PVHWVQKDFEDLANLHNKGTSTRILLMYS----EELSHML 480 (596)
Q Consensus 421 i~~ll~A~~~l-~~~~~~lvIvG~~---------------~~g~~~~~l~~~~~~~~~~~~V~~~g~~~----~~~l~~~ 480 (596)
++..++.+.++ .+.++.++|..+. ..-...+.++.+.+.....++|-+.++.+ -+.+..+
T Consensus 19 ~e~~v~~a~~~~~~~g~dViIsRG~ta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~l 98 (176)
T PF06506_consen 19 LEEAVEEARQLLESEGADVIISRGGTAELLRKHVSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEEL 98 (176)
T ss_dssp HHHHHHHHHHHHTTTT-SEEEEEHHHHHHHHCC-SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhHhcCCeEEEECCHHHHHHHHhCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHH
Confidence 56666666666 4456666665540 00012234444444334444555555422 2334444
Q ss_pred HHhCCEEEEcCCC-CCCchHHHHHHhcCCceEEe
Q 043397 481 YAAADIVLVPSIY-EPCGLAQMIGMRYGAVPVVR 513 (596)
Q Consensus 481 ~a~aDi~l~PS~~-E~~gl~~lEAma~G~pvI~s 513 (596)
+ ..++...+... +.....+.++..-|+=+|+.
T Consensus 99 l-~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVG 131 (176)
T PF06506_consen 99 L-GVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVG 131 (176)
T ss_dssp H-T-EEEEEEESSHHHHHHHHHHHHHTT--EEEE
T ss_pred h-CCceEEEEECCHHHHHHHHHHHHHcCCcEEEC
Confidence 4 44555555432 34445556666666655553
No 396
>PRK06487 glycerate dehydrogenase; Provisional
Probab=28.32 E-value=1.4e+02 Score=30.50 Aligned_cols=45 Identities=24% Similarity=0.332 Sum_probs=31.8
Q ss_pred HHHHHHHhCCEEEE--cCCCCC---CchHHHHHHhcCCceEEeCCCCccc
Q 043397 476 LSHMLYAAADIVLV--PSIYEP---CGLAQMIGMRYGAVPVVRKTGGLAD 520 (596)
Q Consensus 476 ~l~~~~a~aDi~l~--PS~~E~---~gl~~lEAma~G~pvI~s~~gg~~e 520 (596)
.+.++++.||++++ |...|+ ++-..+..|--|.-.|-+..|++-|
T Consensus 190 ~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVd 239 (317)
T PRK06487 190 PLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVD 239 (317)
T ss_pred CHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccC
Confidence 47889999999875 444455 4456788888887677677776433
No 397
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=28.16 E-value=5.4e+02 Score=24.68 Aligned_cols=75 Identities=15% Similarity=0.080 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCch
Q 043397 420 GLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGL 498 (596)
Q Consensus 420 Gi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl 498 (596)
+.+..++.+.+. +...+.+=- .......++.+.++++|....+.+-...+-+.+..++...|.+++-|..-+||.
T Consensus 69 ~p~~~i~~~~~~---gad~i~~H~-Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgG 143 (220)
T PRK08883 69 PVDRIIPDFAKA---GASMITFHV-EASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGG 143 (220)
T ss_pred CHHHHHHHHHHh---CCCEEEEcc-cCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCC
Confidence 567777777654 444444432 001234566677888888877888888999999999999999988776555543
No 398
>PRK08105 flavodoxin; Provisional
Probab=28.11 E-value=95 Score=27.78 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=24.3
Q ss_pred cccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 123 KVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 123 ~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
.+|-.+.++..+++.|.++|++|.++.
T Consensus 11 ~tGnte~~A~~l~~~l~~~g~~~~~~~ 37 (149)
T PRK08105 11 VYGNALLVAEEAEAILTAQGHEVTLFE 37 (149)
T ss_pred CchHHHHHHHHHHHHHHhCCCceEEec
Confidence 568889999999999999999999875
No 399
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=27.98 E-value=4.9e+02 Score=24.10 Aligned_cols=110 Identities=12% Similarity=0.178 Sum_probs=58.5
Q ss_pred EEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHhc--CCceE
Q 043397 437 QMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMRY--GAVPV 511 (596)
Q Consensus 437 ~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma~--G~pvI 511 (596)
+++++.+. ....+.+....+..+. ......+.++....+. ..|++++-... +..|+.+++.+.. ..|+|
T Consensus 3 ~iLivdd~--~~~~~~l~~~L~~~g~----~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr~~~~~pvi 76 (225)
T PRK10529 3 NVLIVEDE--QAIRRFLRTALEGDGM----RVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAIPVI 76 (225)
T ss_pred EEEEEeCC--HHHHHHHHHHHHHCCC----EEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCCCCCEE
Confidence 45566551 2333444444444332 2223333333333332 35888775543 4456666665542 56776
Q ss_pred E-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 512 V-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 512 ~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
+ +........+.-. ..|..+++..|.+.+++...+..++..
T Consensus 77 ~lt~~~~~~~~~~~~-----~~ga~~~l~kP~~~~~l~~~i~~~~~~ 118 (225)
T PRK10529 77 VLSARSEESDKIAAL-----DAGADDYLSKPFGIGELQARLRVALRR 118 (225)
T ss_pred EEECCCCHHHHHHHH-----HcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 6 3333222222111 116789999999999999999888763
No 400
>PLN02764 glycosyltransferase family protein
Probab=27.95 E-value=1.1e+02 Score=33.11 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=30.2
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccc
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFY 152 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~ 152 (596)
.+++|+++ |++..|=+ .-..+||+.|+.+|+.|+++++..
T Consensus 4 ~~~Hvvl~-----P~paqGHi-~P~l~LAk~La~~g~~vT~~tt~~ 43 (453)
T PLN02764 4 LKFHVLMY-----PWFATGHM-TPFLFLANKLAEKGHTVTFLLPKK 43 (453)
T ss_pred CCcEEEEE-----CCcccccH-HHHHHHHHHHHhCCCEEEEEeCcc
Confidence 45899998 44345544 444699999999999999999654
No 401
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=27.90 E-value=2.1e+02 Score=28.04 Aligned_cols=101 Identities=9% Similarity=0.068 Sum_probs=55.7
Q ss_pred cCCHHHHHHHHHHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCC-cEEEE-eccCHHHHHHHHHhCCEEEEcCCC
Q 043397 418 QKGLHLITHAIKRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGT-STRIL-LMYSEELSHMLYAAADIVLVPSIY 493 (596)
Q Consensus 418 ~KGi~~ll~A~~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~-~V~~~-g~~~~~~l~~~~a~aDi~l~PS~~ 493 (596)
.|=.+.|..|+.-+.. .+-+++++|.. ......+++.++.-|... .=+|+ |.+... ...-+..-|++++....
T Consensus 52 ~kT~~~L~~Aa~~i~~i~~~~~Il~Vstr--~~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~-~~~~f~~P~llIV~Dp~ 128 (249)
T PTZ00254 52 AKTWEKLKLAARVIAAIENPADVVVVSSR--PYGQRAVLKFAQYTGASAIAGRFTPGTFTNQ-IQKKFMEPRLLIVTDPR 128 (249)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEEEcC--HHHHHHHHHHHHHhCCeEECCcccCCCCCCc-cccccCCCCEEEEeCCC
Confidence 3444555555544322 35577888872 223344555665544321 01455 344432 22333455666665432
Q ss_pred CCCchHHHHHHhcCCceEE-eCCCCccccc
Q 043397 494 EPCGLAQMIGMRYGAVPVV-RKTGGLADTV 522 (596)
Q Consensus 494 E~~gl~~lEAma~G~pvI~-s~~gg~~e~i 522 (596)
.-...+.||-..|+|+|+ .|+-.-.+.|
T Consensus 129 -~d~qAI~EA~~lnIPvIal~DTds~p~~V 157 (249)
T PTZ00254 129 -TDHQAIREASYVNIPVIALCDTDSPLEYV 157 (249)
T ss_pred -cchHHHHHHHHhCCCEEEEecCCCCcccC
Confidence 234689999999999999 5766666665
No 402
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=27.90 E-value=1.3e+02 Score=26.69 Aligned_cols=27 Identities=22% Similarity=0.159 Sum_probs=22.4
Q ss_pred cccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 123 KVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 123 ~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
...|....+.+||..|++.|++|.++-
T Consensus 10 ~g~G~t~~a~~lA~~la~~~~~Vllid 36 (157)
T PF13614_consen 10 GGVGKTTLALNLAAALARKGKKVLLID 36 (157)
T ss_dssp TTSSHHHHHHHHHHHHHHTTT-EEEEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 347888999999999999999977776
No 403
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=27.65 E-value=99 Score=30.31 Aligned_cols=37 Identities=27% Similarity=0.251 Sum_probs=26.8
Q ss_pred eeEEEEeecccccccccC--HHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGG--LGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG--~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||++.|.. ..|| -.+.+-+||.+|++.|++|.+|=-.
T Consensus 1 M~~iai~s------~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 1 MKVIAIVS------PKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred CcEEEEec------CCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 66655542 2354 4567888999999999999998533
No 404
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=27.64 E-value=1.1e+02 Score=33.45 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=31.1
Q ss_pred CCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccc
Q 043397 106 SNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFY 152 (596)
Q Consensus 106 ~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~ 152 (596)
..+++|+++ |++..|=+.-+ .+||+.|+.+|+.|+++++..
T Consensus 7 ~~~~HVvl~-----PfpaqGHi~P~-l~LAk~La~~G~~VTfv~T~~ 47 (477)
T PLN02863 7 PAGTHVLVF-----PFPAQGHMIPL-LDLTHRLALRGLTITVLVTPK 47 (477)
T ss_pred CCCCEEEEe-----cCcccchHHHH-HHHHHHHHhCCCEEEEEeCCC
Confidence 345799998 54455655554 599999999999999998654
No 405
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=27.51 E-value=2e+02 Score=30.46 Aligned_cols=94 Identities=14% Similarity=-0.033 Sum_probs=62.4
Q ss_pred cccCCHHHHHHHHHHHHH--------cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEE
Q 043397 416 VAQKGLHLITHAIKRAEE--------LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIV 487 (596)
Q Consensus 416 ~~~KGi~~ll~A~~~l~~--------~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~ 487 (596)
....|.+..++++.+... .+-.+.|+|...-.....+++++.+++|+..+..+.+..+-+++.. +..|.+-
T Consensus 133 ~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~-~~~A~~n 211 (406)
T cd01967 133 SQSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRVNATFTGDGTVDELRR-AHRAKLN 211 (406)
T ss_pred cccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhh-CccCCEE
Confidence 346678888888755432 2346888887322234578899999999988888888778777876 5667766
Q ss_pred EEcCCCCCCchHHHHHH--hcCCceEE
Q 043397 488 LVPSIYEPCGLAQMIGM--RYGAVPVV 512 (596)
Q Consensus 488 l~PS~~E~~gl~~lEAm--a~G~pvI~ 512 (596)
++.+.. ++....+.| .+|+|.+.
T Consensus 212 iv~~~~--~~~~~a~~L~~r~GiP~~~ 236 (406)
T cd01967 212 LVHCSR--SMNYLAREMEERYGIPYME 236 (406)
T ss_pred EEEChH--HHHHHHHHHHHhhCCCEEE
Confidence 654432 344444444 47888875
No 406
>PRK08267 short chain dehydrogenase; Provisional
Probab=27.47 E-value=78 Score=30.85 Aligned_cols=27 Identities=15% Similarity=0.029 Sum_probs=21.5
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||.+..-..+++.|+++|++|.++...
T Consensus 8 Gasg~iG~~la~~l~~~G~~V~~~~r~ 34 (260)
T PRK08267 8 GAASGIGRATALLFAAEGWRVGAYDIN 34 (260)
T ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 555666668999999999999988643
No 407
>PLN02214 cinnamoyl-CoA reductase
Probab=27.43 E-value=85 Score=32.36 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=22.7
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||.+..-..++++|.++||+|.++...
T Consensus 17 GatGfIG~~l~~~L~~~G~~V~~~~r~ 43 (342)
T PLN02214 17 GAGGYIASWIVKILLERGYTVKGTVRN 43 (342)
T ss_pred CCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence 777777788999999999999988743
No 408
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=27.43 E-value=3.3e+02 Score=22.71 Aligned_cols=77 Identities=17% Similarity=0.116 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchH
Q 043397 420 GLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLA 499 (596)
Q Consensus 420 Gi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~ 499 (596)
|.+.+++++++ ..+.|+|+..+........++++++.+++ -+....+.+++-..+-...+.++.-..+++.-.
T Consensus 21 G~~~v~~aik~---gk~~lVI~A~D~s~~~kkki~~~~~~~~v----p~~~~~t~~eLg~a~Gk~~~~~iai~d~g~a~~ 93 (104)
T PRK05583 21 GYNKCEEAIKK---KKVYLIIISNDISENSKNKFKNYCNKYNI----PYIEGYSKEELGNAIGRDEIKILGVKDKNMAKK 93 (104)
T ss_pred cHHHHHHHHHc---CCceEEEEeCCCCHhHHHHHHHHHHHcCC----CEEEecCHHHHHHHhCCCCeEEEEEeChHHHHH
Confidence 45566666544 46788888764445567778877776543 334335777777776665555554445555555
Q ss_pred HHHH
Q 043397 500 QMIG 503 (596)
Q Consensus 500 ~lEA 503 (596)
+++.
T Consensus 94 l~~~ 97 (104)
T PRK05583 94 LLKL 97 (104)
T ss_pred HHHH
Confidence 5543
No 409
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=27.42 E-value=4e+02 Score=26.79 Aligned_cols=164 Identities=12% Similarity=0.076 Sum_probs=81.7
Q ss_pred ccccc--cccccccccccccccccceeeceecccCCcceeeecccCCCCCCCCCceec-CCCCCCcCccccCCCCcccCc
Q 043397 20 RRNGM--KRTKLMANHNMFYSSKSMISLPILAHTNPSLAVVTEKLGCPADFGFGELVW-PTPGDEIPFWKNKFPSRYASL 96 (596)
Q Consensus 20 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~ 96 (596)
-|.|. +=|++++.|+.-+-.-||..-+ .+.-+.|... +.| |.|.+ +.-++..+..-.-..
T Consensus 15 DrpGIVa~Vt~~La~~g~NI~d~s~~~~~---~~g~F~m~i~-------------v~~~~~~~~-~~~L~~~L~~l~~~l 77 (286)
T PRK06027 15 DRPGIVAAVSNFLYEHGGNIVDADQFVDP---ETGRFFMRVE-------------FEGDGLIFN-LETLRADFAALAEEF 77 (286)
T ss_pred CCCcHHHHHHHHHHHCCCCEEEceeEEcC---CCCeEEEEEE-------------EEeCCCCCC-HHHHHHHHHHHHHHh
Confidence 45554 3478888898888877776633 1112444333 233 33322 111222111000000
Q ss_pred CCccccccCCCceeEEEEeecccccccccCHHHHHhHHHHHHHhc--CCeEEEEeccccchhhhhhcccceeeeEEeecC
Q 043397 97 EAPAEIEKDSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSR--GHTVDIMLPFYECIQKQEISDLALITTYNSYHD 174 (596)
Q Consensus 97 ~~~~~~~~~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~--Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~ 174 (596)
...-.+-...++|||+++.+ |+ +.-...|..+.... +++|.++.+.......-
T Consensus 78 ~l~i~l~~~~~~~ri~vl~S--------g~-gsnl~al~~~~~~~~~~~~i~~visn~~~~~~l---------------- 132 (286)
T PRK06027 78 EMDWRLLDSAERKRVVILVS--------KE-DHCLGDLLWRWRSGELPVEIAAVISNHDDLRSL---------------- 132 (286)
T ss_pred CCEEEEcccccCcEEEEEEc--------CC-CCCHHHHHHHHHcCCCCcEEEEEEEcChhHHHH----------------
Confidence 01111223557799998852 33 56666777776653 56777776543322111
Q ss_pred CceEEEEEEeeeeCCeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHH
Q 043397 175 GNWVATNAYHGVVSSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLY 253 (596)
Q Consensus 175 ~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~ 253 (596)
....|++++.++... ..+ ..+...+.++++. .+||+|.+..|..-+-+.++
T Consensus 133 ----------A~~~gIp~~~~~~~~-~~~---------------~~~~~~~~~~l~~--~~~Dlivlagy~~il~~~~l 183 (286)
T PRK06027 133 ----------VERFGIPFHHVPVTK-ETK---------------AEAEARLLELIDE--YQPDLVVLARYMQILSPDFV 183 (286)
T ss_pred ----------HHHhCCCEEEeccCc-ccc---------------chhHHHHHHHHHH--hCCCEEEEecchhhcCHHHH
Confidence 113588888776321 110 0123344455543 68999998876655444444
No 410
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=27.40 E-value=5e+02 Score=24.05 Aligned_cols=81 Identities=14% Similarity=0.107 Sum_probs=47.9
Q ss_pred ccCHHHHHHHHH--hCCEEEEcCCCCC---CchHHHHHHh---cCCceEE-eCCCCccccccccCCCCCCCccceEEEeC
Q 043397 471 MYSEELSHMLYA--AADIVLVPSIYEP---CGLAQMIGMR---YGAVPVV-RKTGGLADTVFDVDDPSNHEKANGFVFEG 541 (596)
Q Consensus 471 ~~~~~~l~~~~a--~aDi~l~PS~~E~---~gl~~lEAma---~G~pvI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~ 541 (596)
..+.++....+. ..|++++-....+ -|+.+++.+. ..+|+|. +..........-. ..|..+++..|
T Consensus 30 ~~~~~~~~~~~~~~~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ls~~~~~~~~~~~~-----~~Ga~~~l~kp 104 (227)
T TIGR03787 30 YADRPSAMQAFRQRLPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIFLTARDSDFDTVSGL-----RLGADDYLTKD 104 (227)
T ss_pred ecCHHHHHHHHHhCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHH-----hcCCCEEEECC
Confidence 334444444443 3678877655432 4666665554 3467776 3333322222111 11678999999
Q ss_pred CCHHHHHHHHHHHHH
Q 043397 542 IDEGSLNWALDRAFR 556 (596)
Q Consensus 542 ~d~~~la~~i~~ll~ 556 (596)
.+.+++...+..++.
T Consensus 105 ~~~~~l~~~i~~~~~ 119 (227)
T TIGR03787 105 ISLPHLLARITALFR 119 (227)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988875
No 411
>PRK09004 FMN-binding protein MioC; Provisional
Probab=27.33 E-value=1e+02 Score=27.46 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=23.9
Q ss_pred cccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 123 KVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 123 ~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
.+|-.+.++..+++.+.++|++|.++.
T Consensus 11 ~tGnae~~A~~l~~~~~~~g~~~~~~~ 37 (146)
T PRK09004 11 TLGGAEYVADHLAEKLEEAGFSTETLH 37 (146)
T ss_pred CchHHHHHHHHHHHHHHHcCCceEEec
Confidence 568889999999999999999999864
No 412
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=27.30 E-value=63 Score=26.77 Aligned_cols=27 Identities=37% Similarity=0.543 Sum_probs=23.1
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEeccc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPFY 152 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~~ 152 (596)
|| |..+..-++.|.+.|-+|+|++|..
T Consensus 14 Gg-G~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 14 GG-GPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp EE-SHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CC-CHHHHHHHHHHHhCCCEEEEECCch
Confidence 55 7777888999999999999999764
No 413
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=27.10 E-value=3.9e+02 Score=25.32 Aligned_cols=83 Identities=11% Similarity=-0.008 Sum_probs=45.8
Q ss_pred eccCHHHHHHHHHh--CCEEEE----cCCCCCCchHHHHHHhc---CCceEE-eCCCCccccccccCCCCCCCccceEEE
Q 043397 470 LMYSEELSHMLYAA--ADIVLV----PSIYEPCGLAQMIGMRY---GAVPVV-RKTGGLADTVFDVDDPSNHEKANGFVF 539 (596)
Q Consensus 470 g~~~~~~l~~~~a~--aDi~l~----PS~~E~~gl~~lEAma~---G~pvI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv 539 (596)
.+-+.++....+.. .|++++ +..-+.-|+.+++.+.. ++|+|+ |........+.... ..|..||+.
T Consensus 22 ~~~~~~~~l~~~~~~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~~~~~~~~~~----~~Ga~gyl~ 97 (207)
T PRK11475 22 TFSSQSSFQDAMSRISFSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDIEARLIGSLS----PSPLDGVLS 97 (207)
T ss_pred EeCCHHHHHHHhccCCCCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCCHHHHHHHHH----HcCCeEEEe
Confidence 33444444444432 366652 22334557777766633 455555 32211111221100 016789999
Q ss_pred eCCCHHHHHHHHHHHHH
Q 043397 540 EGIDEGSLNWALDRAFR 556 (596)
Q Consensus 540 ~~~d~~~la~~i~~ll~ 556 (596)
.+.+.++|.++|+.+++
T Consensus 98 K~~~~~eL~~aI~~v~~ 114 (207)
T PRK11475 98 KASTLEILQQELFLSLN 114 (207)
T ss_pred cCCCHHHHHHHHHHHHC
Confidence 99999999999998875
No 414
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=27.02 E-value=1.6e+02 Score=24.46 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=27.3
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcC---CeEEEEec
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRG---HTVDIMLP 150 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~G---h~V~vi~p 150 (596)
|+|+++.... |+ ..........++......| ++|.|+.-
T Consensus 1 k~v~~i~~~~-p~--~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~ 42 (122)
T PF02635_consen 1 KKVFFIVTSG-PY--DDERAKIALRLANAAAAMGDYGHDVVVFFH 42 (122)
T ss_dssp EEEEEEE-S--TT--TBSHHHHHHHHHHHHHHTTHTTSEEEEEE-
T ss_pred CEEEEEecCC-CC--CCHHHHHHHHHHHHHHHcCCCCCcEEEEEE
Confidence 6788886543 32 2333777888999999999 99998873
No 415
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=26.76 E-value=76 Score=31.93 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=21.4
Q ss_pred CHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 126 GLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 126 G~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
|++.+-.-+|+.|.++||+|+|+-.
T Consensus 7 GLG~MG~pmA~~L~~aG~~v~v~~r 31 (286)
T COG2084 7 GLGIMGSPMAANLLKAGHEVTVYNR 31 (286)
T ss_pred cCchhhHHHHHHHHHCCCEEEEEeC
Confidence 4577777999999999999999963
No 416
>PRK05884 short chain dehydrogenase; Provisional
Probab=26.72 E-value=80 Score=30.13 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=19.7
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+..-..+++.|.++|++|.++..
T Consensus 7 Gas~giG~~ia~~l~~~g~~v~~~~r 32 (223)
T PRK05884 7 GGDTDLGRTIAEGFRNDGHKVTLVGA 32 (223)
T ss_pred eCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 44444556789999999999998864
No 417
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=26.58 E-value=5.2e+02 Score=23.92 Aligned_cols=81 Identities=15% Similarity=0.113 Sum_probs=47.9
Q ss_pred ccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHh---cCCceEE-eCCCCccccccccCCCCCCCccceEEEeCCC
Q 043397 471 MYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMR---YGAVPVV-RKTGGLADTVFDVDDPSNHEKANGFVFEGID 543 (596)
Q Consensus 471 ~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma---~G~pvI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d 543 (596)
..+.++....+. ..|++++-... +.-|+.+++.+. ..+|+|. +......+.+.... .|..+++..|.+
T Consensus 30 ~~~~~~~l~~~~~~~~dlvild~~l~~~~g~~l~~~lr~~~~~~pii~ls~~~~~~~~~~~l~-----~Ga~d~l~kp~~ 104 (223)
T PRK10816 30 AEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLS-----AGADDYVTKPFH 104 (223)
T ss_pred ECCHHHHHHHHhhCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHH-----cCCCeeEeCCCC
Confidence 334444444443 35777765433 345566665553 3567776 33333333222111 167889999999
Q ss_pred HHHHHHHHHHHHH
Q 043397 544 EGSLNWALDRAFR 556 (596)
Q Consensus 544 ~~~la~~i~~ll~ 556 (596)
.+++...+..++.
T Consensus 105 ~~eL~~~i~~~~~ 117 (223)
T PRK10816 105 IEEVMARMQALMR 117 (223)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988875
No 418
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=26.54 E-value=4.2e+02 Score=25.15 Aligned_cols=107 Identities=12% Similarity=0.102 Sum_probs=61.0
Q ss_pred EEEEecccc--cCCHHHHHHHHHHHHHcCCEEEEEecCCC--CcchHHHHHHHHHc-CCCCcEEEEeccCHHHHHHHHHh
Q 043397 409 VVCITRLVA--QKGLHLITHAIKRAEELGGQMILLGNSPV--HWVQKDFEDLANLH-NKGTSTRILLMYSEELSHMLYAA 483 (596)
Q Consensus 409 il~iGrl~~--~KGi~~ll~A~~~l~~~~~~lvIvG~~~~--g~~~~~l~~~~~~~-~~~~~V~~~g~~~~~~l~~~~a~ 483 (596)
++.-|...+ .-+.+.|.+.+.++...+.++.++..+.+ ..+...+.+..+++ +. .+..+...+.++..+.+..
T Consensus 3 ~~igg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~--~~~~~~~~~~~~~~~~l~~ 80 (212)
T cd03146 3 LLTSGGGLGYLAHALPAIDDLLLSLTKARPKVLFVPTASGDRDEYTARFYAAFESLRGV--EVSHLHLFDTEDPLDALLE 80 (212)
T ss_pred EEEeCCcccccccchHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHhhccCc--EEEEEeccCcccHHHHHhc
Confidence 334344333 33556666666655445678999887432 12223344444455 54 3444444445667889999
Q ss_pred CCEEEEcCC--------CCCCch--HHHHHHhcCCceEEeCCCC
Q 043397 484 ADIVLVPSI--------YEPCGL--AQMIGMRYGAVPVVRKTGG 517 (596)
Q Consensus 484 aDi~l~PS~--------~E~~gl--~~lEAma~G~pvI~s~~gg 517 (596)
||++++|-= +...++ .+-++...|+|++....|.
T Consensus 81 ad~I~l~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa 124 (212)
T cd03146 81 ADVIYVGGGNTFNLLAQWREHGLDAILKAALERGVVYIGWSAGS 124 (212)
T ss_pred CCEEEECCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhH
Confidence 999999841 112232 2345566798888876664
No 419
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=26.50 E-value=85 Score=30.61 Aligned_cols=27 Identities=22% Similarity=0.159 Sum_probs=20.1
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||.+..-..+++.|+++|++|.++...
T Consensus 7 Gas~gIG~aia~~l~~~G~~V~~~~r~ 33 (259)
T PRK08340 7 ASSRGIGFNVARELLKKGARVVISSRN 33 (259)
T ss_pred cCCcHHHHHHHHHHHHcCCEEEEEeCC
Confidence 444455558899999999998887643
No 420
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=26.48 E-value=1e+02 Score=26.98 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=25.5
Q ss_pred cccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 123 KVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 123 ~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
..|-.+.++..+++.|.++|++|.++...
T Consensus 6 ~tG~te~~A~~ia~~l~~~g~~~~~~~~~ 34 (143)
T PF00258_consen 6 MTGNTEKMAEAIAEGLRERGVEVRVVDLD 34 (143)
T ss_dssp SSSHHHHHHHHHHHHHHHTTSEEEEEEGG
T ss_pred CchhHHHHHHHHHHHHHHcCCceeeechh
Confidence 46888999999999999999999999743
No 421
>PRK12320 hypothetical protein; Provisional
Probab=26.45 E-value=77 Score=36.23 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=26.4
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||||+. ||.|..-..|++.|.++||+|.++..
T Consensus 1 MkILVT----------GAaGFIGs~La~~Ll~~G~~Vi~ldr 32 (699)
T PRK12320 1 MQILVT----------DATGAVGRSVTRQLIAAGHTVSGIAQ 32 (699)
T ss_pred CEEEEE----------CCCCHHHHHHHHHHHhCCCEEEEEeC
Confidence 677765 77777777899999999999998873
No 422
>PRK05920 aromatic acid decarboxylase; Validated
Probab=26.37 E-value=1.2e+02 Score=28.92 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=25.3
Q ss_pred ceeEEEEeecccccccccCHH-HHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLG-DVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~-~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
.+||++.. .||++ ..+..+.+.|.+.|++|.++...
T Consensus 3 ~krIllgI--------TGsiaa~ka~~lvr~L~~~g~~V~vi~T~ 39 (204)
T PRK05920 3 MKRIVLAI--------TGASGAIYGVRLLECLLAADYEVHLVISK 39 (204)
T ss_pred CCEEEEEE--------eCHHHHHHHHHHHHHHHHCCCEEEEEECh
Confidence 46776653 23333 45667899999999999988743
No 423
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=26.35 E-value=5.4e+02 Score=25.11 Aligned_cols=54 Identities=11% Similarity=-0.047 Sum_probs=37.4
Q ss_pred CCcEEEEec--cCHHHHHHHHHhCCEEEEc--CC-CCCCchHHHHHHhcCCceEEeCCC
Q 043397 463 GTSTRILLM--YSEELSHMLYAAADIVLVP--SI-YEPCGLAQMIGMRYGAVPVVRKTG 516 (596)
Q Consensus 463 ~~~V~~~g~--~~~~~l~~~~a~aDi~l~P--S~-~E~~gl~~lEAma~G~pvI~s~~g 516 (596)
.++|.+.|. ++.+.+...+..||++|+- |. ..+...-+.+|-..|.++|.-+.+
T Consensus 150 rP~vV~FGE~~~~~~~~~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~ 208 (242)
T PTZ00408 150 RPHIVWFGEMPLYMDEIESVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLE 208 (242)
T ss_pred CCCEEEcCCCCCcHHHHHHHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCC
Confidence 567888876 4566677788999998763 32 244444456788899998876654
No 424
>PLN02928 oxidoreductase family protein
Probab=26.31 E-value=1.5e+02 Score=30.87 Aligned_cols=45 Identities=31% Similarity=0.313 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCEEEE--cCCCCCCc---hHHHHHHhcCCceEEeCCCCc
Q 043397 474 EELSHMLYAAADIVLV--PSIYEPCG---LAQMIGMRYGAVPVVRKTGGL 518 (596)
Q Consensus 474 ~~~l~~~~a~aDi~l~--PS~~E~~g---l~~lEAma~G~pvI~s~~gg~ 518 (596)
...+.++++.||++++ |...|+-+ -..+..|--|.-+|-...|++
T Consensus 217 ~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~l 266 (347)
T PLN02928 217 HEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGL 266 (347)
T ss_pred ccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccc
Confidence 3458899999999876 44445444 457788888876666666653
No 425
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=26.30 E-value=1e+02 Score=29.00 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=28.9
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHh-cCCeEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLS-RGHTVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~-~Gh~V~vi~ 149 (596)
+|||+++.... .|-....+..+++.+.+ .|.+|.++.
T Consensus 1 M~kilIvy~S~-----~G~T~~lA~~ia~g~~~~~G~ev~~~~ 38 (200)
T PRK03767 1 MAKVLVLYYSM-----YGHIETMAEAVAEGAREVAGAEVTIKR 38 (200)
T ss_pred CCeEEEEEcCC-----CCHHHHHHHHHHHHHhhcCCcEEEEEe
Confidence 46888885332 36678888889999988 899999886
No 426
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=26.24 E-value=78 Score=34.29 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=22.7
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
|||+++. ||+.- ..-|.+|+++||+|+|+=.
T Consensus 1 ~rVai~G---------aG~Ag--L~~a~~La~~g~~vt~~ea 31 (485)
T COG3349 1 MRVAIAG---------AGLAG--LAAAYELADAGYDVTLYEA 31 (485)
T ss_pred CeEEEEc---------ccHHH--HHHHHHHHhCCCceEEEec
Confidence 6788773 44433 3568899999999999863
No 427
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=26.23 E-value=66 Score=30.68 Aligned_cols=38 Identities=21% Similarity=0.112 Sum_probs=29.0
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
|..+++| .+ | ..|-.+++.+|+++|.+.+|+|..++..
T Consensus 1 mpLiIlT-Gy-P---gsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 1 MPLIILT-GY-P---GSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred CceEEEe-cC-C---CCCchHHHHHHHHHHHHhhhhccccchh
Confidence 4455554 23 4 3677999999999999999999998743
No 428
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=26.10 E-value=7e+02 Score=25.27 Aligned_cols=138 Identities=13% Similarity=0.030 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHcCCEEEE-EecCCCCcchHHHHHHHHHcCCCCcEEEEe-cc-CHHHHHHHHHhCCEEE--EcCCCC-
Q 043397 421 LHLITHAIKRAEELGGQMIL-LGNSPVHWVQKDFEDLANLHNKGTSTRILL-MY-SEELSHMLYAAADIVL--VPSIYE- 494 (596)
Q Consensus 421 i~~ll~A~~~l~~~~~~lvI-vG~~~~g~~~~~l~~~~~~~~~~~~V~~~g-~~-~~~~l~~~~a~aDi~l--~PS~~E- 494 (596)
.+.+.++++..++.++.+.+ +|. ............++|.. + .-+| .+ ++++...+++..++.+ +|+..-
T Consensus 171 ~~~~~~~~~~A~~~g~~i~~Ha~E---~~~~~~~~~~~~~~g~~-r-i~Hg~~l~~~~~~i~~l~~~gi~v~~cP~Sn~~ 245 (324)
T TIGR01430 171 PPDFVRAFAIARELGLHLTVHAGE---LGGPESVREALDDLGAT-R-IGHGVRALEDPELLKRLAQENITLEVCPTSNVA 245 (324)
T ss_pred HHHHHHHHHHHHHCCCCeEEecCC---CCChHHHHHHHHHcCch-h-cchhhhhccCHHHHHHHHHcCceEEECCccccc
Confidence 45566666666665665544 333 11122333444455542 2 2222 23 2456778888888766 676432
Q ss_pred -----CCch-HHHHHHhcCCceEE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHH
Q 043397 495 -----PCGL-AQMIGMRYGAVPVV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNR 567 (596)
Q Consensus 495 -----~~gl-~~lEAma~G~pvI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~ 567 (596)
+++. .+-+.+..|+||.. ||.++. +.. ++.+.+..+...+.-.++.+.+
T Consensus 246 l~~~~~~~~~pi~~l~~~Gv~v~igTD~~~~--------------------~~~----~l~~e~~~a~~~~~l~~~el~~ 301 (324)
T TIGR01430 246 LGVVKSLAEHPLRRFLEAGVKVTLNSDDPAY--------------------FGS----YLTEEYEIAAKHAGLTEEELKQ 301 (324)
T ss_pred ccccCCcccChHHHHHHCCCEEEECCCCCcc--------------------cCC----CHHHHHHHHHHHcCCCHHHHHH
Confidence 1222 35677889987765 553321 111 2333333333323235666777
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 043397 568 IVQKIMENDNSWNNAAGKYM 587 (596)
Q Consensus 568 ~~~~~~~~~fs~~~~~~~~~ 587 (596)
+.+++++.-|--+..-++++
T Consensus 302 ~~~na~~~~f~~~~~k~~l~ 321 (324)
T TIGR01430 302 LARNALEGSFLSDDEKKELL 321 (324)
T ss_pred HHHHHHHHhCCCHHHHHHHH
Confidence 77887776665555555544
No 429
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=25.88 E-value=8.3e+02 Score=26.05 Aligned_cols=135 Identities=16% Similarity=0.089 Sum_probs=76.2
Q ss_pred HHHHHhhcC-CCCCCCccEEEEEecccccCCHHHHHHHHHHHHHcCC-EEEEEecCCCCcchHHHHHHHHHcCCCCcEEE
Q 043397 391 KYYIQKGLG-LKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGG-QMILLGNSPVHWVQKDFEDLANLHNKGTSTRI 468 (596)
Q Consensus 391 k~~~~~~l~-l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~-~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~ 468 (596)
...+++.++ + ....++++|-= +..--+++.+.+.++ ++.|++. ..+.-++++++++
T Consensus 166 v~lA~~~~~~L----~~~~vlvIGAG------em~~lva~~L~~~g~~~i~IaNR-----T~erA~~La~~~~------- 223 (414)
T COG0373 166 VELAKRIFGSL----KDKKVLVIGAG------EMGELVAKHLAEKGVKKITIANR-----TLERAEELAKKLG------- 223 (414)
T ss_pred HHHHHHHhccc----ccCeEEEEccc------HHHHHHHHHHHhCCCCEEEEEcC-----CHHHHHHHHHHhC-------
Confidence 344555665 3 34455666641 122223444555665 5666665 4677888898877
Q ss_pred EeccCHHHHHHHHHhCCEEEEcCCC--CCCchHHHH-HHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHH
Q 043397 469 LLMYSEELSHMLYAAADIVLVPSIY--EPCGLAQMI-GMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEG 545 (596)
Q Consensus 469 ~g~~~~~~l~~~~a~aDi~l~PS~~--E~~gl~~lE-Ama~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~ 545 (596)
-..++-+++..+++.+|++++.+-. .-.+...+| |+.--...+..|.+-.+++-.+.. +-.+-++++ .+
T Consensus 224 ~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRdie~~v~-----~l~~v~l~~---iD 295 (414)
T COG0373 224 AEAVALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRDVEPEVG-----ELPNVFLYT---ID 295 (414)
T ss_pred CeeecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCCCCcccc-----CcCCeEEEe---hh
Confidence 2346677799999999999976432 233444443 333333357778877777655421 012345554 55
Q ss_pred HHHHHHHHHH
Q 043397 546 SLNWALDRAF 555 (596)
Q Consensus 546 ~la~~i~~ll 555 (596)
+|....++-+
T Consensus 296 DL~~iv~~n~ 305 (414)
T COG0373 296 DLEEIVEENL 305 (414)
T ss_pred hHHHHHHHhH
Confidence 5554444433
No 430
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=25.83 E-value=82 Score=30.35 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=18.7
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
||.+-.-..+++.|.++|++|.++.
T Consensus 9 Gas~giG~~la~~l~~~g~~v~~~~ 33 (248)
T PRK06947 9 GASRGIGRATAVLAAARGWSVGINY 33 (248)
T ss_pred CCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 4444455678999999999987764
No 431
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=25.80 E-value=7.8e+02 Score=25.70 Aligned_cols=91 Identities=9% Similarity=0.033 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEecC--------CCCc---chHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEE
Q 043397 419 KGLHLITHAIKRAEELGGQMILLGNS--------PVHW---VQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIV 487 (596)
Q Consensus 419 KGi~~ll~A~~~l~~~~~~lvIvG~~--------~~g~---~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~ 487 (596)
..-+.+++.++.+.+.+++++-.|.- ..|. ....+.+.++++|+ -.+....+.+.+..+...+|++
T Consensus 129 E~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl---~~~t~v~d~~~~~~l~~~vd~l 205 (360)
T PRK12595 129 ESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGL---AVISEIVNPADVEVALDYVDVI 205 (360)
T ss_pred cCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCC---CEEEeeCCHHHHHHHHHhCCeE
Confidence 34677888888887777887776631 0122 22355666677765 3444566666677777779999
Q ss_pred EEcCCC-CCCchHHHHH-HhcCCceEEeC
Q 043397 488 LVPSIY-EPCGLAQMIG-MRYGAVPVVRK 514 (596)
Q Consensus 488 l~PS~~-E~~gl~~lEA-ma~G~pvI~s~ 514 (596)
-+||.. .. ..++++ ...|+||+.+.
T Consensus 206 kI~s~~~~n--~~LL~~~a~~gkPVilk~ 232 (360)
T PRK12595 206 QIGARNMQN--FELLKAAGRVNKPVLLKR 232 (360)
T ss_pred EECcccccC--HHHHHHHHccCCcEEEeC
Confidence 999975 34 345544 45799999865
No 432
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=25.62 E-value=1.3e+02 Score=29.86 Aligned_cols=39 Identities=10% Similarity=0.053 Sum_probs=29.5
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
+..|++.|+..- ..-|-.+.+.+||.+|++.|++|.++=
T Consensus 101 ~~~~vi~vts~~----~g~Gktt~a~nLA~~la~~g~~VllID 139 (274)
T TIGR03029 101 EGRKALAVVSAK----SGEGCSYIAANLAIVFSQLGEKTLLID 139 (274)
T ss_pred CCCeEEEEECCC----CCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 345766665433 235778889999999999999999884
No 433
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=25.56 E-value=94 Score=28.73 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=27.6
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
|||+++-.. ..|-...++..+++.|.. |++|.++-
T Consensus 1 MkilIvY~S-----~~G~T~~iA~~Ia~~l~~-g~~v~~~~ 35 (177)
T PRK11104 1 MKTLILYSS-----RDGQTRKIASYIASELKE-GIQCDVVN 35 (177)
T ss_pred CcEEEEEEC-----CCChHHHHHHHHHHHhCC-CCeEEEEE
Confidence 788777322 568888889999999988 99998874
No 434
>PRK00211 sulfur relay protein TusC; Validated
Probab=25.49 E-value=1.3e+02 Score=25.89 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=26.3
Q ss_pred ceeEEEEeecccccccccC-HHHHHhHHHHHHHhcCCeEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGG-LGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG-~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
++||+|+.... |+ |. .++-..+++-+++..+++|.|+.
T Consensus 1 M~ki~~i~~~~-Py---g~~~~~eaLd~ala~~a~~~~v~vff 39 (119)
T PRK00211 1 MKRIAFVFRQA-PH---GTASGREGLDALLATSAFTEDIGVFF 39 (119)
T ss_pred CceEEEEecCC-CC---CCHHHHHHHHHHHHHhcccCCeeEEE
Confidence 35799986554 64 43 44445556888888889998886
No 435
>PLN02527 aspartate carbamoyltransferase
Probab=25.47 E-value=7.1e+02 Score=25.30 Aligned_cols=90 Identities=12% Similarity=0.112 Sum_probs=56.8
Q ss_pred hhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCc-chHHHHHHHHHcCCCCcEE
Q 043397 389 ICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHW-VQKDFEDLANLHNKGTSTR 467 (596)
Q Consensus 389 ~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~-~~~~l~~~~~~~~~~~~V~ 467 (596)
.+-..+++++|- -+...|+++|-....+=...++.++.++ .++.+.+++.. +. ..+.+.+.+++.| .++.
T Consensus 137 aDl~Ti~e~~g~---l~g~kva~vGD~~~~rv~~Sl~~~~~~~--~g~~v~~~~P~--~~~~~~~~~~~~~~~g--~~~~ 207 (306)
T PLN02527 137 LDVYTIQREIGR---LDGIKVGLVGDLANGRTVRSLAYLLAKY--EDVKIYFVAPD--VVKMKDDIKDYLTSKG--VEWE 207 (306)
T ss_pred HHHHHHHHHhCC---cCCCEEEEECCCCCChhHHHHHHHHHhc--CCCEEEEECCC--ccCCCHHHHHHHHHcC--CEEE
Confidence 345566777763 3568899999764334467777777665 57899999972 21 2345555555433 2344
Q ss_pred EEeccCHHHHHHHHHhCCEEEEcCC
Q 043397 468 ILLMYSEELSHMLYAAADIVLVPSI 492 (596)
Q Consensus 468 ~~g~~~~~~l~~~~a~aDi~l~PS~ 492 (596)
+. ++ +.+.++.||++.....
T Consensus 208 ~~---~d--~~~a~~~aDvvyt~~~ 227 (306)
T PLN02527 208 ES---SD--LMEVASKCDVLYQTRI 227 (306)
T ss_pred EE---cC--HHHHhCCCCEEEECCc
Confidence 33 22 5578899999988654
No 436
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=25.42 E-value=1.3e+02 Score=28.90 Aligned_cols=54 Identities=19% Similarity=0.147 Sum_probs=33.8
Q ss_pred cCCEEEEEecCCCCc--chHHHHHHHHHcCC-CCcEEEEeccCHHHHHHHHHhCCEEEEcCCC
Q 043397 434 LGGQMILLGNSPVHW--VQKDFEDLANLHNK-GTSTRILLMYSEELSHMLYAAADIVLVPSIY 493 (596)
Q Consensus 434 ~~~~lvIvG~~~~g~--~~~~l~~~~~~~~~-~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~ 493 (596)
.+...+++|++ +|- ..+...++.++... -+-+.|.|..+. +-..||.+++||..
T Consensus 24 ~gtdai~vGGS-~~v~~~~~~~~~~ik~~~~~~Pvilfp~~~~~-----i~~~aDa~l~~svl 80 (219)
T cd02812 24 SGTDAIMVGGS-DGVSSTLDNVVRLIKRIRRPVPVILFPSNPEA-----VSPGADAYLFPSVL 80 (219)
T ss_pred cCCCEEEECCc-cchhhhHHHHHHHHHHhcCCCCEEEeCCCccc-----cCcCCCEEEEEeee
Confidence 57788888873 333 34445455555442 234556666544 45779999999964
No 437
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=25.27 E-value=6.2e+02 Score=24.95 Aligned_cols=103 Identities=15% Similarity=0.093 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHH---HcCCCCcEEEE---eccCHHHHHHHHHhC----C---
Q 043397 419 KGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLAN---LHNKGTSTRIL---LMYSEELSHMLYAAA----D--- 485 (596)
Q Consensus 419 KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~---~~~~~~~V~~~---g~~~~~~l~~~~a~a----D--- 485 (596)
..++.+.++++..++.+.++.+..........+.+.++++ +.|. +.|.+. |...++++..+++.. +
T Consensus 111 ~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~ 189 (268)
T cd07940 111 EVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGA-TTINIPDTVGYLTPEEFGELIKKLKENVPNIK 189 (268)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCC-CEEEECCCCCCCCHHHHHHHHHHHHHhCCCCc
Confidence 4456666777777666665543322111223444444444 3443 245554 455666666665443 2
Q ss_pred EEEEcCCCCCCchH---HHHHHhcCCceEEeCCCCccccc
Q 043397 486 IVLVPSIYEPCGLA---QMIGMRYGAVPVVRKTGGLADTV 522 (596)
Q Consensus 486 i~l~PS~~E~~gl~---~lEAma~G~pvI~s~~gg~~e~i 522 (596)
+-+---.+..+|+. .++|+.+|+-.|=+..+|+.+-.
T Consensus 190 i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG~~a 229 (268)
T cd07940 190 VPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIGERA 229 (268)
T ss_pred eeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeecccccc
Confidence 33322235667765 58999999999988888887543
No 438
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=25.26 E-value=4.6e+02 Score=26.39 Aligned_cols=108 Identities=7% Similarity=0.032 Sum_probs=58.5
Q ss_pred CCCceeEEEEeecccccccccCHHHHHhHHHHHHHhc--CCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEE
Q 043397 105 DSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSR--GHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNA 182 (596)
Q Consensus 105 ~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~--Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (596)
.+++|||+++.+ | .+.-...|..+.... +++|.++.+..+....-
T Consensus 86 ~~~~~ri~vl~S--------g-~g~nl~al~~~~~~~~~~~~i~~visn~~~~~~l------------------------ 132 (286)
T PRK13011 86 PAARPKVLIMVS--------K-FDHCLNDLLYRWRIGELPMDIVGVVSNHPDLEPL------------------------ 132 (286)
T ss_pred cccCceEEEEEc--------C-CcccHHHHHHHHHcCCCCcEEEEEEECCccHHHH------------------------
Confidence 446789999852 2 355666777776543 57887765433222110
Q ss_pred EeeeeCCeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccC
Q 043397 183 YHGVVSSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSL 262 (596)
Q Consensus 183 ~~~~~~gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~ 262 (596)
....|++++.++... .. ...+...+.++++. .++|+|.+..|..-+-+.++...
T Consensus 133 --A~~~gIp~~~~~~~~--~~--------------~~~~~~~~~~~l~~--~~~Dlivlagy~~il~~~~l~~~------ 186 (286)
T PRK13011 133 --AAWHGIPFHHFPITP--DT--------------KPQQEAQVLDVVEE--SGAELVVLARYMQVLSPELCRKL------ 186 (286)
T ss_pred --HHHhCCCEEEeCCCc--Cc--------------hhhhHHHHHHHHHH--hCcCEEEEeChhhhCCHHHHhhc------
Confidence 113578887765211 00 00122334444443 58999998876655555444321
Q ss_pred CCCcEEEEEcC
Q 043397 263 KKPRIVLTIHN 273 (596)
Q Consensus 263 ~~~pvv~tiH~ 273 (596)
.. -++.+|.
T Consensus 187 -~~-~iiNiHp 195 (286)
T PRK13011 187 -AG-RAINIHH 195 (286)
T ss_pred -cC-CeEEecc
Confidence 22 3677883
No 439
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=25.18 E-value=91 Score=30.67 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=20.8
Q ss_pred cCHH--HHHhHHHHHHHhcCCeEEEEe
Q 043397 125 GGLG--DVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 125 GG~~--~~~~~La~aL~~~Gh~V~vi~ 149 (596)
||+| +.+.+||.+|+++|++|-++=
T Consensus 10 GGvGKTT~~~nLA~~La~~G~kVlliD 36 (270)
T cd02040 10 GGIGKSTTTQNLSAALAEMGKKVMIVG 36 (270)
T ss_pred CcCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 5555 567889999999999999984
No 440
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=25.07 E-value=2.2e+02 Score=29.92 Aligned_cols=69 Identities=16% Similarity=0.044 Sum_probs=43.5
Q ss_pred EEEEEecCCCCcchHHHHHHHHHcCCCCcEEEE--eccCHHHHHHHHHhCCEEEEcCCCCCCchHHH-HHHhcCCceEE
Q 043397 437 QMILLGNSPVHWVQKDFEDLANLHNKGTSTRIL--LMYSEELSHMLYAAADIVLVPSIYEPCGLAQM-IGMRYGAVPVV 512 (596)
Q Consensus 437 ~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~--g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~l-EAma~G~pvI~ 512 (596)
+++++|. ..+.++++++++. ..++.+. ...+.+.+..+++.+|++|...-.- ++..++ -|+..|++.|-
T Consensus 25 ~v~va~r-----~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD 96 (386)
T PF03435_consen 25 EVTVADR-----NPEKAERLAEKLL-GDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVD 96 (386)
T ss_dssp EEEEEES-----SHHHHHHHHT--T-TTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEE
T ss_pred cEEEEEC-----CHHHHHHHHhhcc-ccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeec
Confidence 7777776 3566666665532 2344444 5667778999999999999765322 555544 56788988777
No 441
>PRK06180 short chain dehydrogenase; Provisional
Probab=24.92 E-value=95 Score=30.70 Aligned_cols=26 Identities=31% Similarity=0.294 Sum_probs=20.1
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+..-..+++.|+++|++|.++..
T Consensus 11 GasggiG~~la~~l~~~G~~V~~~~r 36 (277)
T PRK06180 11 GVSSGFGRALAQAALAAGHRVVGTVR 36 (277)
T ss_pred cCCChHHHHHHHHHHhCcCEEEEEeC
Confidence 55455556788899999999998874
No 442
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=24.90 E-value=1.2e+02 Score=32.17 Aligned_cols=30 Identities=20% Similarity=0.150 Sum_probs=20.3
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
|||++|.... +-.+.-..|.+.||+|.++.
T Consensus 1 mkiaiigqs~-----------fg~~vy~~lrk~gheiv~vf 30 (881)
T KOG2452|consen 1 MKIAVIGQSL-----------FGQEVYCHLRKEGHEVVGVF 30 (881)
T ss_pred CeeEEechhh-----------hhHHHHHHHHhcCceEEEEE
Confidence 7888885433 22344567889999987665
No 443
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=24.79 E-value=3.5e+02 Score=29.62 Aligned_cols=86 Identities=14% Similarity=0.081 Sum_probs=42.3
Q ss_pred cCCHHHHHHHHHHHHH-cCCEEE-EEecCCCCcchHHHHHHHHHcCCC--CcEEEEe--cc----CHHHHHHHHHhCCEE
Q 043397 418 QKGLHLITHAIKRAEE-LGGQMI-LLGNSPVHWVQKDFEDLANLHNKG--TSTRILL--MY----SEELSHMLYAAADIV 487 (596)
Q Consensus 418 ~KGi~~ll~A~~~l~~-~~~~lv-IvG~~~~g~~~~~l~~~~~~~~~~--~~V~~~g--~~----~~~~l~~~~a~aDi~ 487 (596)
.+.++.+++-++.+.+ .+++.+ ++++. -....+.+.++++++-.. .++.+.. .+ .++++...+++|-+.
T Consensus 221 ~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~-f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~ 299 (497)
T TIGR02026 221 HRDPKKFVDEIEWLVRTHGVGFFILADEE-PTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGLV 299 (497)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEEecc-cccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCCc
Confidence 4567888888877754 456544 44431 111233444444432111 1344432 11 245677778777654
Q ss_pred EEcCCCCCCchHHHHHH
Q 043397 488 LVPSIYEPCGLAQMIGM 504 (596)
Q Consensus 488 l~PS~~E~~gl~~lEAm 504 (596)
-+--=.|+..-..+++|
T Consensus 300 ~v~iGiES~~~~~L~~~ 316 (497)
T TIGR02026 300 HISLGTEAAAQATLDHF 316 (497)
T ss_pred EEEEccccCCHHHHHHh
Confidence 33333455554455544
No 444
>PTZ00124 adenosine deaminase; Provisional
Probab=24.75 E-value=8.1e+02 Score=25.56 Aligned_cols=155 Identities=10% Similarity=-0.004 Sum_probs=81.7
Q ss_pred EEEEecccccCCHHHHHHHHHHHHHcCCEEEE-EecCCCCcchHHHHHHHHHcCCCCcEEEEe--ccCHHHHHHHHHhCC
Q 043397 409 VVCITRLVAQKGLHLITHAIKRAEELGGQMIL-LGNSPVHWVQKDFEDLANLHNKGTSTRILL--MYSEELSHMLYAAAD 485 (596)
Q Consensus 409 il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvI-vG~~~~g~~~~~l~~~~~~~~~~~~V~~~g--~~~~~~l~~~~a~aD 485 (596)
|+-++--+...+...+.+++...++.++++.+ +|....+.......+.+..++.. + +=+| ...++++.+.++.-.
T Consensus 193 vvGiDLaG~E~~~~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~~v~~ai~~l~~~-R-IGHG~~~~~d~~l~~~l~~~~ 270 (362)
T PTZ00124 193 FVGFDHAGHEVDLKPFKDIFDYVREAGVNLTVHAGEDVTLPNLNTLYSAIQVLKVK-R-IGHGIRVAESQELIDMVKEKD 270 (362)
T ss_pred eEEEeccCCCCCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcchhHHHHHHHhCCC-c-cccccccCCCHHHHHHHHHcC
Confidence 34344444555666778888888777777655 45421111112233333333321 1 1122 224566777887777
Q ss_pred EE--EEcCCCC---C----CchHHHHHHhcCCceEE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHH
Q 043397 486 IV--LVPSIYE---P----CGLAQMIGMRYGAVPVV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAF 555 (596)
Q Consensus 486 i~--l~PS~~E---~----~gl~~lEAma~G~pvI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll 555 (596)
|. ++|+..- . ..-.+-.-+..|+|+.. ||..++... .|.+....+.
T Consensus 271 I~lEvCPtSN~~~~~v~~~~~HPi~~l~~~Gv~v~InTDDp~~~~t------------------------~l~~Ey~~~~ 326 (362)
T PTZ00124 271 ILLEVCPISNVLLNNAKSMDTHPIRKLYDAGVKVSVNSDDPGMFLT------------------------NINDDYEELY 326 (362)
T ss_pred CeEEECCcchhhhhcCCchhhHHHHHHHHCCCcEEEeCCCccccCC------------------------ChhHHHHHHH
Confidence 65 4565321 1 11235566788887765 554443221 1222233333
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043397 556 RHFIDKPEEWNRIVQKIMENDNSWNNAAGKYMEI 589 (596)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~i 589 (596)
+.+.-..+.+.++.+++++..|--+..-+++.+.
T Consensus 327 ~~~gls~~~l~~l~~nai~asF~~~~~K~~l~~~ 360 (362)
T PTZ00124 327 THLNFTLADFMKMNEWALEKSFLDKDIKLKIKKL 360 (362)
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 3333367778888888888777766666666553
No 445
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.66 E-value=5.5e+02 Score=25.85 Aligned_cols=110 Identities=14% Similarity=0.108 Sum_probs=67.9
Q ss_pred HHHHHhhcCCCCCCCccEEEEEecccccC-CHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCC------
Q 043397 391 KYYIQKGLGLKSEGTVPLVVCITRLVAQK-GLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKG------ 463 (596)
Q Consensus 391 k~~~~~~l~l~~~~~~~~il~iGrl~~~K-Gi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~------ 463 (596)
.+.+.+++|++..-+ +. +.-+...+ .+...|+-+++..+ ++-+++.+. ...+.+.+.....+..
T Consensus 164 ~~~l~~rlgv~ek~~-~~---~slFaY~npa~~s~ieq~r~a~~-p~llL~~e~----~~~~~~~~~~~~~~~a~Gdv~~ 234 (370)
T COG4394 164 AEYLLERLGVNEKYD-LI---ASLFAYENPALPSWIEQLRKADK-PILLLIPEG----KTQANFAKYFDNNNNADGDVFQ 234 (370)
T ss_pred HHHHHHHcCCchhhc-hh---hhhhccCCcchHHHHHHHHhcCC-CEEEEcccc----hHHHHHHHHcCCCcccccchhc
Confidence 357888999852111 22 22233344 67777777776643 455666654 4444444432211111
Q ss_pred ---CcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeC
Q 043397 464 ---TSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRK 514 (596)
Q Consensus 464 ---~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~ 514 (596)
-+|..+.+++.++...++..||+-++= -|. +..-|.-+|+|.+=.-
T Consensus 235 ~~~lrvvklPFvpqddyd~LL~lcD~n~VR--GED---SFVRAq~agkPflWHI 283 (370)
T COG4394 235 TAKLRVVKLPFVPQDDYDELLWLCDFNLVR--GED---SFVRAQLAGKPFLWHI 283 (370)
T ss_pred ccceEEEEecCCcHhHHHHHHHhcccceee--cch---HHHHHHHcCCCcEEEe
Confidence 136667899999999999999998753 232 5778889999887643
No 446
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=24.50 E-value=4.2e+02 Score=22.11 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=26.8
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
++||+++++.-- -.+..+..+-++..++|-++++..-
T Consensus 1 Mk~IlLvC~aGm------STSlLV~Km~~aA~~kg~~~~I~A~ 37 (102)
T COG1440 1 MKKILLVCAAGM------STSLLVTKMKKAAESKGKDVTIEAY 37 (102)
T ss_pred CceEEEEecCCC------cHHHHHHHHHHHHHhCCCceEEEEe
Confidence 368888874221 1256778888888889999999873
No 447
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=24.48 E-value=3e+02 Score=26.51 Aligned_cols=76 Identities=14% Similarity=0.045 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCch
Q 043397 419 KGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGL 498 (596)
Q Consensus 419 KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl 498 (596)
.+.+..++.+.+. +..++.+=- ...+...+..++++++|....|.+-...|-+.+..++..+|++++-|..-|||-
T Consensus 71 ~~p~~~i~~fa~a---gad~It~H~-E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgG 146 (220)
T COG0036 71 ENPDRYIEAFAKA---GADIITFHA-EATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGG 146 (220)
T ss_pred CCHHHHHHHHHHh---CCCEEEEEe-ccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcc
Confidence 3457777777765 333332221 014566778888999999888999999999999999999999999888777763
No 448
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=24.36 E-value=6.4e+02 Score=25.24 Aligned_cols=97 Identities=12% Similarity=0.108 Sum_probs=53.9
Q ss_pred CCCceeEEEEeecccccccccCHHHHHhHHHHHHHhcC--CeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEE
Q 043397 105 DSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRG--HTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNA 182 (596)
Q Consensus 105 ~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~G--h~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (596)
.+++|||+++. .|.+.-...|..+..... .+|.++.+..+.....
T Consensus 81 ~~~~~ki~vl~---------Sg~g~nl~~l~~~~~~g~l~~~i~~visn~~~~~~~------------------------ 127 (280)
T TIGR00655 81 ADKLKRVAILV---------SKEDHCLGDLLWRWYSGELDAEIALVISNHEDLRSL------------------------ 127 (280)
T ss_pred CCCCcEEEEEE---------cCCChhHHHHHHHHHcCCCCcEEEEEEEcChhHHHH------------------------
Confidence 34578999885 333666678888876543 3666665443332111
Q ss_pred EeeeeCCeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHH
Q 043397 183 YHGVVSSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYW 254 (596)
Q Consensus 183 ~~~~~~gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~ 254 (596)
....|++++.++... ..+ ..+...+.++++. .++|+|.+..|+.-+.+.++.
T Consensus 128 --A~~~gIp~~~~~~~~-~~~---------------~~~e~~~~~~l~~--~~~Dlivlagym~il~~~~l~ 179 (280)
T TIGR00655 128 --VERFGIPFHYIPATK-DNR---------------VEHEKRQLELLKQ--YQVDLVVLAKYMQILSPDFVK 179 (280)
T ss_pred --HHHhCCCEEEcCCCC-cch---------------hhhHHHHHHHHHH--hCCCEEEEeCchhhCCHHHHh
Confidence 113578887776211 000 1123344455543 689999988776655555543
No 449
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=24.29 E-value=6.6e+02 Score=24.35 Aligned_cols=100 Identities=18% Similarity=0.098 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEecCCCC--cchHHHHH---HHHHcCCCCcEEE---EeccCHHHHHHHHHhC-------
Q 043397 420 GLHLITHAIKRAEELGGQMILLGNSPVH--WVQKDFED---LANLHNKGTSTRI---LLMYSEELSHMLYAAA------- 484 (596)
Q Consensus 420 Gi~~ll~A~~~l~~~~~~lvIvG~~~~g--~~~~~l~~---~~~~~~~~~~V~~---~g~~~~~~l~~~~a~a------- 484 (596)
.++.++++++.+++.+..+.+.-....+ ...+.+.+ .+.++|. +.|.+ .|...++++..+++..
T Consensus 113 ~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~ 191 (265)
T cd03174 113 DLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGA-DEISLKDTVGLATPEEVAELVKALREALPDV 191 (265)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCC-CEEEechhcCCcCHHHHHHHHHHHHHhCCCC
Confidence 3555666666665555544332210112 22333333 3334443 23444 3556666665555442
Q ss_pred CEEEEcCCCCCCchH---HHHHHhcCCceEEeCCCCccccc
Q 043397 485 DIVLVPSIYEPCGLA---QMIGMRYGAVPVVRKTGGLADTV 522 (596)
Q Consensus 485 Di~l~PS~~E~~gl~---~lEAma~G~pvI~s~~gg~~e~i 522 (596)
.+.++. +..+|+. .++|+.+|+-.|-+..+|+.+-.
T Consensus 192 ~~~~H~--Hn~~gla~an~laA~~aG~~~id~s~~G~G~~~ 230 (265)
T cd03174 192 PLGLHT--HNTLGLAVANSLAALEAGADRVDGSVNGLGERA 230 (265)
T ss_pred eEEEEe--CCCCChHHHHHHHHHHcCCCEEEeccccccccc
Confidence 233333 4566664 58999999988888888888654
No 450
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=23.94 E-value=1.5e+02 Score=33.79 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=25.8
Q ss_pred CCCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 105 DSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 105 ~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
.+++++|++|. ||++- ..+|.+|+++|++|+|+=
T Consensus 78 ~~~~~~VlIVG---------gGIaG--LalAlaL~r~Gi~V~V~E 111 (668)
T PLN02927 78 KKKKSRVLVAG---------GGIGG--LVFALAAKKKGFDVLVFE 111 (668)
T ss_pred ccCCCCEEEEC---------CCHHH--HHHHHHHHhcCCeEEEEe
Confidence 45678999984 44443 467888999999999984
No 451
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=23.88 E-value=1.3e+02 Score=30.57 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=21.2
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+..-..+++.|.++||+|.++..
T Consensus 12 G~~G~IG~~l~~~L~~~G~~V~~~~r 37 (325)
T PLN02989 12 GASGYIASWIVKLLLFRGYTINATVR 37 (325)
T ss_pred CCchHHHHHHHHHHHHCCCEEEEEEc
Confidence 66667777899999999999987753
No 452
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=23.80 E-value=1.3e+02 Score=30.37 Aligned_cols=40 Identities=5% Similarity=-0.111 Sum_probs=29.1
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
++||++++....|.. .=.-.....+.++|.++||+|.++-
T Consensus 4 ~~~v~~~~g~~~~~~--~~~~~s~~~i~~al~~~g~~v~~i~ 43 (304)
T PRK01372 4 FGKVAVLMGGTSAER--EVSLNSGAAVLAALREAGYDAHPID 43 (304)
T ss_pred CcEEEEEeCCCCCCc--eEeHHhHHHHHHHHHHCCCEEEEEe
Confidence 458999986666532 1112345789999999999999985
No 453
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=23.78 E-value=1.1e+02 Score=31.06 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=24.7
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
|||.+| |++.+-..|++.|.+.||+|.++-.
T Consensus 1 M~Ig~I-----------GlG~mG~~la~~L~~~g~~V~~~dr 31 (298)
T TIGR00872 1 MQLGLI-----------GLGRMGANIVRRLAKRGHDCVGYDH 31 (298)
T ss_pred CEEEEE-----------cchHHHHHHHHHHHHCCCEEEEEEC
Confidence 577776 3477778999999999999988753
No 454
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=23.73 E-value=1.1e+02 Score=32.20 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=27.3
Q ss_pred CceeEEEEeecccccccccCHHH--HHhHHHHHHHhcCCeEEEEe
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGD--VVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~--~~~~La~aL~~~Gh~V~vi~ 149 (596)
++++|+-|+. ..||+|. .+.+||.+|+.+|++|-++=
T Consensus 104 ~~~~vIav~n------~KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 104 KNPVVLAVMS------HKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred CCceEEEEec------CCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 4567666643 3577664 57789999999999998883
No 455
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=23.72 E-value=1.1e+02 Score=30.24 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=25.2
Q ss_pred eeEEEEeecccccccccCHH--HHHhHHHHHHHhcCCeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLG--DVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~--~~~~~La~aL~~~Gh~V~vi~ 149 (596)
+||+-|+ ..||+| +.+.+||.+|+++|++|-|+=
T Consensus 2 ~~iIav~-------~KGGVGKTT~~~nLA~~la~~G~kVLliD 37 (270)
T PRK13185 2 ALVLAVY-------GKGGIGKSTTSSNLSAAFAKLGKKVLQIG 37 (270)
T ss_pred ceEEEEE-------CCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3666664 236655 557889999999999999883
No 456
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=23.71 E-value=76 Score=31.63 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=25.7
Q ss_pred ccCHHHHHhHHHHHHHhcCCeEEEEeccc
Q 043397 124 VGGLGDVVTGLARACLSRGHTVDIMLPFY 152 (596)
Q Consensus 124 ~GG~~~~~~~La~aL~~~Gh~V~vi~p~~ 152 (596)
+||.+-.-..|...|.+.||+|++++...
T Consensus 4 TGgTGlIG~~L~~~L~~~gh~v~iltR~~ 32 (297)
T COG1090 4 TGGTGLIGRALTARLRKGGHQVTILTRRP 32 (297)
T ss_pred eccccchhHHHHHHHHhCCCeEEEEEcCC
Confidence 58888888999999999999999999543
No 457
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=23.71 E-value=99 Score=31.61 Aligned_cols=32 Identities=25% Similarity=0.169 Sum_probs=24.5
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
|||.++. .|.+-..++..|++.||+|.++...
T Consensus 1 MkI~IiG-----------aGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 1 MKISILG-----------AGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred CEEEEEC-----------cCHHHHHHHHHHHHCCCeEEEEecC
Confidence 6777772 2556668899999999999988753
No 458
>PRK12743 oxidoreductase; Provisional
Probab=23.65 E-value=1e+02 Score=30.05 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=20.3
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+..-..+++.|++.|++|.++..
T Consensus 9 Gas~giG~~~a~~l~~~G~~V~~~~~ 34 (256)
T PRK12743 9 ASDSGIGKACALLLAQQGFDIGITWH 34 (256)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 55555566899999999999987753
No 459
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=23.65 E-value=6.6e+02 Score=24.11 Aligned_cols=118 Identities=15% Similarity=0.114 Sum_probs=62.6
Q ss_pred CccEEEEEecc-cccCCHHHHHHHHHHHHHcCC--EEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHH
Q 043397 405 TVPLVVCITRL-VAQKGLHLITHAIKRAEELGG--QMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLY 481 (596)
Q Consensus 405 ~~~~il~iGrl-~~~KGi~~ll~A~~~l~~~~~--~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~ 481 (596)
...+|+|+|.- ...+. .|++.++++++.++ .++..|.. ....+.+...+...+.. =
T Consensus 107 ~~riVvFvGSpi~e~ek--eLv~~akrlkk~~Vaidii~FGE~--~~~~e~l~~fida~N~~-----------------~ 165 (259)
T KOG2884|consen 107 KQRIVVFVGSPIEESEK--ELVKLAKRLKKNKVAIDIINFGEA--ENNTEKLFEFIDALNGK-----------------G 165 (259)
T ss_pred ceEEEEEecCcchhhHH--HHHHHHHHHHhcCeeEEEEEeccc--cccHHHHHHHHHHhcCC-----------------C
Confidence 45678899974 33333 67777788877665 44555652 22234455555443321 0
Q ss_pred HhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCc-cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 482 AAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGL-ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 482 a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~-~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
..|+++.+|+ -+ .+-+++.. .|+|.-+-||. .....+ +...-|=++|.+.-+||-+|+--++
T Consensus 166 ~gshlv~Vpp----g~-~L~d~l~s-sPii~ge~g~a~~~~~a~-------g~~f~fgvdp~~DPELAlALRlSME 228 (259)
T KOG2884|consen 166 DGSHLVSVPP----GP-LLSDALLS-SPIIQGEDGGAAAGLGAN-------GMDFEFGVDPEDDPELALALRLSME 228 (259)
T ss_pred CCceEEEeCC----Cc-cHHHHhhc-CceeccCccccccccccc-------ccccccCCCcccCHHHHHHHHhhHH
Confidence 2345565552 22 33444443 47777654442 222211 1223344566666789999876665
No 460
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=23.63 E-value=1e+02 Score=31.84 Aligned_cols=25 Identities=24% Similarity=-0.027 Sum_probs=20.0
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
||.+-.-..+++.|.++||+|.++.
T Consensus 11 GatG~IG~~l~~~L~~~G~~V~~~~ 35 (349)
T TIGR02622 11 GHTGFKGSWLSLWLLELGAEVYGYS 35 (349)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEe
Confidence 5555555689999999999998875
No 461
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=23.57 E-value=85 Score=32.64 Aligned_cols=79 Identities=14% Similarity=0.039 Sum_probs=47.4
Q ss_pred HHHHHHhCCEEEEcC--CCCCCch-HHHHHHhcCCceEEeC--CCCccccccccCCCCCCCccceEEE--eCCCHHHHHH
Q 043397 477 SHMLYAAADIVLVPS--IYEPCGL-AQMIGMRYGAVPVVRK--TGGLADTVFDVDDPSNHEKANGFVF--EGIDEGSLNW 549 (596)
Q Consensus 477 l~~~~a~aDi~l~PS--~~E~~gl-~~lEAma~G~pvI~s~--~gg~~e~i~~~~~~~~~~~~~G~lv--~~~d~~~la~ 549 (596)
...+++..-..+..- ..+.+=. ++..|+.+|+.||.-. .....+++.. +.++. +-.++++|++
T Consensus 221 ~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~~~~~P~----------~SfI~~~df~s~~~La~ 290 (349)
T PF00852_consen 221 KLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNYEEFAPP----------NSFIHVDDFKSPKELAD 290 (349)
T ss_dssp HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTHHHHS-G----------GGSEEGGGSSSHHHHHH
T ss_pred ccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEecccccCCCC----------CCccchhcCCCHHHHHH
Confidence 556666666665432 2223222 6789999999999976 5556666643 33333 2347999999
Q ss_pred HHHHHHHhccCCHHHHHHHH
Q 043397 550 ALDRAFRHFIDKPEEWNRIV 569 (596)
Q Consensus 550 ~i~~ll~~~~~~~~~~~~~~ 569 (596)
-|..+-+ |++++.+.-
T Consensus 291 yl~~l~~----n~~~Y~~yf 306 (349)
T PF00852_consen 291 YLKYLDK----NDELYNKYF 306 (349)
T ss_dssp HHHHHHT-----HHHHH---
T ss_pred HHHHHhc----CHHHHhhhc
Confidence 9999988 888776644
No 462
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=23.50 E-value=6e+02 Score=23.57 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=42.9
Q ss_pred hCCEEEEcCCC-CCCchHHHHHHh---cCCceEE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 483 AADIVLVPSIY-EPCGLAQMIGMR---YGAVPVV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 483 ~aDi~l~PS~~-E~~gl~~lEAma---~G~pvI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
..|++++-... ..-|+.+++.+. .++|+|. +........+.-.. .|..+++..|.+.+++...+..++.
T Consensus 44 ~~dlvild~~~~~~~g~~~~~~lr~~~~~~pii~ls~~~~~~~~~~~~~-----~Ga~~~l~kp~~~~~l~~~i~~~~~ 117 (227)
T PRK09836 44 DYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLE-----LGADDYLVKPFAFAELLARVRTLLR 117 (227)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHh-----CCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 35777765433 445666665554 3567776 33333222222111 1678999999999999999988875
No 463
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=23.38 E-value=2.2e+02 Score=29.95 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=29.6
Q ss_pred HHHHHHhCCEEE--EcCCCC----CCch---HHHHHHhcCCceEEeCCCCc
Q 043397 477 SHMLYAAADIVL--VPSIYE----PCGL---AQMIGMRYGAVPVVRKTGGL 518 (596)
Q Consensus 477 l~~~~a~aDi~l--~PS~~E----~~gl---~~lEAma~G~pvI~s~~gg~ 518 (596)
+.++++.||+++ +|...+ +.++ ..+..|.-|.-+|-+..|++
T Consensus 161 L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~v 211 (378)
T PRK15438 161 LDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAV 211 (378)
T ss_pred HHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchh
Confidence 778899999988 565443 5444 57788888876666666664
No 464
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=23.36 E-value=90 Score=30.89 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=21.9
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+..-..+++.|.++||+|+++..
T Consensus 6 G~tG~iG~~l~~~l~~~g~~v~~~~r 31 (287)
T TIGR01214 6 GANGQLGRELVQQLSPEGRVVVALTS 31 (287)
T ss_pred cCCCHHHHHHHHHHHhcCCEEEEeCC
Confidence 77777777899999999999998863
No 465
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=23.31 E-value=99 Score=29.81 Aligned_cols=27 Identities=19% Similarity=0.062 Sum_probs=21.2
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||.+..-..+++.|.++|++|.+++..
T Consensus 8 Ga~g~lG~~l~~~l~~~g~~v~~~~r~ 34 (255)
T TIGR01963 8 GAASGIGLAIALALAAAGANVVVNDLG 34 (255)
T ss_pred CCcchHHHHHHHHHHHCCCEEEEEeCC
Confidence 555555668999999999999888754
No 466
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=23.24 E-value=1e+02 Score=30.38 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=21.0
Q ss_pred ccCHH--HHHhHHHHHHHhcCCeEEEEe
Q 043397 124 VGGLG--DVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 124 ~GG~~--~~~~~La~aL~~~Gh~V~vi~ 149 (596)
.||+| +.+.+||.+|+++|++|-++=
T Consensus 8 KGGvGKTT~a~nLA~~la~~G~rvlliD 35 (267)
T cd02032 8 KGGIGKSTTSSNLSVALAKRGKKVLQIG 35 (267)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 36555 567889999999999998884
No 467
>CHL00148 orf27 Ycf27; Reviewed
Probab=23.23 E-value=6.2e+02 Score=23.62 Aligned_cols=111 Identities=13% Similarity=0.227 Sum_probs=58.8
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHh--cCCc
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMR--YGAV 509 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma--~G~p 509 (596)
..+++++.+. ......+....+..+. .+. ...+.++....+. ..|++++-... ...|+.+++.+. ..+|
T Consensus 6 ~~~ilivdd~--~~~~~~l~~~l~~~~~--~v~--~~~~~~~~l~~~~~~~~d~illd~~~~~~~g~~~~~~l~~~~~~~ 79 (240)
T CHL00148 6 KEKILVVDDE--AYIRKILETRLSIIGY--EVI--TASDGEEALKLFRKEQPDLVILDVMMPKLDGYGVCQEIRKESDVP 79 (240)
T ss_pred CceEEEEeCC--HHHHHHHHHHHHHCCC--EEE--EeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCc
Confidence 3466677661 2233344444443321 232 2234444444443 35777775433 344666555543 2566
Q ss_pred eEE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 510 PVV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 510 vI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
+|+ +..........-. ..|..+++..|.+.++|...+..++.
T Consensus 80 ii~ls~~~~~~~~~~~~-----~~Ga~~~l~kp~~~~~L~~~i~~~~~ 122 (240)
T CHL00148 80 IIMLTALGDVSDRITGL-----ELGADDYVVKPFSPKELEARIRSVLR 122 (240)
T ss_pred EEEEECCCCHHhHHHHH-----HCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 665 3333222222111 11678999999999999999988775
No 468
>PRK05723 flavodoxin; Provisional
Probab=23.19 E-value=1.3e+02 Score=27.10 Aligned_cols=36 Identities=11% Similarity=0.041 Sum_probs=28.0
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
|||.++-.. .+|-.+.++..+++.|.++|++|.++.
T Consensus 1 ~~i~I~ygS-----~tG~ae~~A~~la~~l~~~g~~~~~~~ 36 (151)
T PRK05723 1 MKVAILSGS-----VYGTAEEVARHAESLLKAAGFEAWHNP 36 (151)
T ss_pred CeEEEEEEc-----CchHHHHHHHHHHHHHHHCCCceeecC
Confidence 566665221 568889999999999999999998753
No 469
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=23.17 E-value=2.2e+02 Score=29.31 Aligned_cols=44 Identities=34% Similarity=0.455 Sum_probs=33.0
Q ss_pred HHHHHHhCCEEEE--cCCCCCCch---HHHHHHhcCCceEEeCCCCccc
Q 043397 477 SHMLYAAADIVLV--PSIYEPCGL---AQMIGMRYGAVPVVRKTGGLAD 520 (596)
Q Consensus 477 l~~~~a~aDi~l~--PS~~E~~gl---~~lEAma~G~pvI~s~~gg~~e 520 (596)
+.++++.||++++ |...|+..+ ..++.|--|.-.|-+..|++-|
T Consensus 194 l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VD 242 (324)
T COG1052 194 LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVD 242 (324)
T ss_pred HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccC
Confidence 6779999999864 666676555 5788899997777677777543
No 470
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=23.11 E-value=1.1e+02 Score=31.59 Aligned_cols=32 Identities=19% Similarity=0.155 Sum_probs=25.5
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhc-CCeEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSR-GHTVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~-Gh~V~vi~ 149 (596)
+|||++. ||.|..-..|+++|.++ ||+|..+.
T Consensus 1 m~~ilVt----------GatGfiGs~l~~~L~~~~~~~V~~~~ 33 (347)
T PRK11908 1 MKKVLIL----------GVNGFIGHHLSKRILETTDWEVYGMD 33 (347)
T ss_pred CcEEEEE----------CCCcHHHHHHHHHHHhCCCCeEEEEe
Confidence 3677754 77788888999999886 79999886
No 471
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=22.98 E-value=6.8e+02 Score=26.24 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=10.5
Q ss_pred HHHHhcCCceEEeCCCCccc
Q 043397 501 MIGMRYGAVPVVRKTGGLAD 520 (596)
Q Consensus 501 lEAma~G~pvI~s~~gg~~e 520 (596)
++|+.+|+-.|-+...|+.+
T Consensus 207 laAv~aGa~~vd~tv~GlGe 226 (378)
T PRK11858 207 LAGIEAGAKQVHTTVNGLGE 226 (378)
T ss_pred HHHHHcCCCEEEEeeccccc
Confidence 55555555555555555443
No 472
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=22.91 E-value=1.2e+02 Score=29.62 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=21.1
Q ss_pred ccCHHH--HHhHHHHHHHhcCCeEEEEe
Q 043397 124 VGGLGD--VVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 124 ~GG~~~--~~~~La~aL~~~Gh~V~vi~ 149 (596)
.||.|. .+.+||.+|++.|++|.++=
T Consensus 10 kGGvGKTt~a~~lA~~la~~g~~vlliD 37 (261)
T TIGR01968 10 KGGVGKTTTTANLGTALARLGKKVVLID 37 (261)
T ss_pred CCCccHHHHHHHHHHHHHHcCCeEEEEE
Confidence 455554 78899999999999998884
No 473
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=22.90 E-value=1.1e+02 Score=30.97 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=26.4
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
|||++++.+-. -.....+.+++.++||+|.++.+.
T Consensus 1 m~~~i~~~~~s--------~~s~~~~~~a~~~~g~~v~~i~~~ 35 (300)
T PRK10446 1 MKIAILSRDGT--------LYSCKRLREAAIQRGHLVEILDPL 35 (300)
T ss_pred CeEEEEecCCc--------chhHHHHHHHHHHcCCeEEEEehH
Confidence 78998875431 234468999999999999999643
No 474
>PRK12367 short chain dehydrogenase; Provisional
Probab=22.88 E-value=1.1e+02 Score=29.82 Aligned_cols=26 Identities=23% Similarity=0.288 Sum_probs=19.8
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+..-..++++|+++|++|.++..
T Consensus 21 Gas~gIG~ala~~l~~~G~~Vi~~~r 46 (245)
T PRK12367 21 GASGALGKALTKAFRAKGAKVIGLTH 46 (245)
T ss_pred cCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 44444556889999999999988764
No 475
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=22.64 E-value=7.6e+02 Score=26.50 Aligned_cols=93 Identities=12% Similarity=0.086 Sum_probs=56.7
Q ss_pred hhHHHHHhhcCC-CCCCCccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCc-chHHHHHHHHHcCCCCcE
Q 043397 389 ICKYYIQKGLGL-KSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHW-VQKDFEDLANLHNKGTST 466 (596)
Q Consensus 389 ~~k~~~~~~l~l-~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~-~~~~l~~~~~~~~~~~~V 466 (596)
.+--.+++.+|- ...-+...|+++|-+...+=...++.++..+ .++++.+++.. +. ..+.+.+.+++.| .+|
T Consensus 223 aDl~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~--~G~~v~l~~P~--~~~~~~~~~~~~~~~G--~~v 296 (429)
T PRK11891 223 LDLYTIQREFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALY--RGLKFTLVSPP--TLEMPAYIVEQISRNG--HVI 296 (429)
T ss_pred HHHHHHHHHhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHh--cCCEEEEECCC--ccccCHHHHHHHHhcC--CeE
Confidence 345566777652 1002457899999774344466777766544 47899999972 32 3345555555433 235
Q ss_pred EEEeccCHHHHHHHHHhCCEEEEcCC
Q 043397 467 RILLMYSEELSHMLYAAADIVLVPSI 492 (596)
Q Consensus 467 ~~~g~~~~~~l~~~~a~aDi~l~PS~ 492 (596)
.+. ++ +.+.++.||++...+.
T Consensus 297 ~~~---~d--~~eav~~ADVVYt~~~ 317 (429)
T PRK11891 297 EQT---DD--LAAGLRGADVVYATRI 317 (429)
T ss_pred EEE---cC--HHHHhCCCCEEEEcCc
Confidence 443 33 5678899999988664
No 476
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=22.53 E-value=1.2e+02 Score=30.77 Aligned_cols=33 Identities=27% Similarity=0.176 Sum_probs=23.4
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
+|+++|| ||.+-.-..++++|+++|++|.+++.
T Consensus 6 ~k~vlVT---------Gas~gIG~~~a~~L~~~G~~V~~~~r 38 (322)
T PRK07453 6 KGTVIIT---------GASSGVGLYAAKALAKRGWHVIMACR 38 (322)
T ss_pred CCEEEEE---------cCCChHHHHHHHHHHHCCCEEEEEEC
Confidence 4666665 44444445789999999999988864
No 477
>PRK09581 pleD response regulator PleD; Reviewed
Probab=22.51 E-value=9e+02 Score=25.29 Aligned_cols=80 Identities=16% Similarity=0.143 Sum_probs=49.1
Q ss_pred cCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHhc-----CCceEE-eCCCCccccccccCCCCCCCccceEEEeCC
Q 043397 472 YSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMRY-----GAVPVV-RKTGGLADTVFDVDDPSNHEKANGFVFEGI 542 (596)
Q Consensus 472 ~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma~-----G~pvI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~ 542 (596)
-+.++....+.. .|++++.... ..-|+.+++.+.. .+|+|+ +..+.......-. ..|..+|+..|.
T Consensus 33 ~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii~~s~~~~~~~~~~~~-----~~ga~~~l~kp~ 107 (457)
T PRK09581 33 SSGAEAIAICEREQPDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVVMVTALDDPEDRVRGL-----EAGADDFLTKPI 107 (457)
T ss_pred CCHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECCCCHHHHHHHH-----HCCCCEEEECCC
Confidence 333444445443 5777776543 3456777777653 467776 3433322222111 116789999999
Q ss_pred CHHHHHHHHHHHHH
Q 043397 543 DEGSLNWALDRAFR 556 (596)
Q Consensus 543 d~~~la~~i~~ll~ 556 (596)
+.++|...+..++.
T Consensus 108 ~~~~l~~~i~~~~~ 121 (457)
T PRK09581 108 NDVALFARVKSLTR 121 (457)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988775
No 478
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=22.46 E-value=1.1e+02 Score=29.23 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=21.5
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||.+..-..+++.|.++|++|.++...
T Consensus 9 G~s~~iG~~la~~l~~~g~~vi~~~r~ 35 (245)
T PRK12824 9 GAKRGIGSAIARELLNDGYRVIATYFS 35 (245)
T ss_pred CCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 666667778999999999999887643
No 479
>PLN02173 UDP-glucosyl transferase family protein
Probab=22.35 E-value=1.5e+02 Score=32.10 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=28.9
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+.+|+++ |++..|=+.-+ .+||+.|+.+|+.|+++++.
T Consensus 5 ~~hvv~~-----P~paqGHi~P~-l~lAk~La~~G~~vT~v~t~ 42 (449)
T PLN02173 5 RGHVLAV-----PFPSQGHITPI-RQFCKRLHSKGFKTTHTLTT 42 (449)
T ss_pred CcEEEEe-----cCcccccHHHH-HHHHHHHHcCCCEEEEEECC
Confidence 4588888 44455555544 59999999999999999854
No 480
>PRK05331 putative phosphate acyltransferase; Provisional
Probab=22.27 E-value=8.7e+02 Score=25.02 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=37.4
Q ss_pred cccccCCHHHHHHHHHHHHHc--CCEEEEEecCCCCcchHHHHHHHHHcCCC-CcEEEEec
Q 043397 414 RLVAQKGLHLITHAIKRAEEL--GGQMILLGNSPVHWVQKDFEDLANLHNKG-TSTRILLM 471 (596)
Q Consensus 414 rl~~~KGi~~ll~A~~~l~~~--~~~lvIvG~~~~g~~~~~l~~~~~~~~~~-~~V~~~g~ 471 (596)
-+.-..|.+.+++++.+..+. .++++++|+ .+.+++.+++++.. +++.++..
T Consensus 8 amGgD~~p~~vl~aa~~a~~~~~~~~~iLvG~------~~~I~~~l~~~~~~~~~~~Iv~~ 62 (334)
T PRK05331 8 AMGGDFGPEVVVPGALQALKEHPDLEIILVGD------EEKIKPLLAKKPDLKERIEIVHA 62 (334)
T ss_pred cCCCccCHHHHHHHHHHHHhcCCCeEEEEEeC------HHHHHHHHHhcCCCcCCcEEEeC
Confidence 345578999999998887664 479999998 46777777766643 34666643
No 481
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=22.18 E-value=8.8e+02 Score=25.03 Aligned_cols=102 Identities=11% Similarity=0.017 Sum_probs=64.3
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEec--C------CCCc---chHHHHHHHHHcCCCCcEEEEeccCHHH
Q 043397 408 LVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGN--S------PVHW---VQKDFEDLANLHNKGTSTRILLMYSEEL 476 (596)
Q Consensus 408 ~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~--~------~~g~---~~~~l~~~~~~~~~~~~V~~~g~~~~~~ 476 (596)
.++..| -+.-..-+.+++.++.+++-+.+++..|- + ..|. -...+.+.+++.|+ -.+....+.+.
T Consensus 94 ~~~IAG-PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~~Gl---~v~tev~d~~~ 169 (335)
T PRK08673 94 PVVIAG-PCSVESEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREETGL---PIVTEVMDPRD 169 (335)
T ss_pred eEEEEe-cCccCCHHHHHHHHHHHHHhchhhccCcEecCCCCCcccccccHHHHHHHHHHHHHcCC---cEEEeeCCHHH
Confidence 334444 44556678899999888775555443321 0 0121 23445566667776 35556677777
Q ss_pred HHHHHHhCCEEEEcCCC-CCCchHHHHHHhcCCceEEeC
Q 043397 477 SHMLYAAADIVLVPSIY-EPCGLAQMIGMRYGAVPVVRK 514 (596)
Q Consensus 477 l~~~~a~aDi~l~PS~~-E~~gl~~lEAma~G~pvI~s~ 514 (596)
+..+...+|++-++|+. .++.+ +-++...|+||+.+.
T Consensus 170 ~~~l~~~vd~lqIgAr~~~N~~L-L~~va~~~kPViLk~ 207 (335)
T PRK08673 170 VELVAEYVDILQIGARNMQNFDL-LKEVGKTNKPVLLKR 207 (335)
T ss_pred HHHHHHhCCeEEECcccccCHHH-HHHHHcCCCcEEEeC
Confidence 77777779999999985 55442 345567899999864
No 482
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=22.16 E-value=1.5e+02 Score=29.95 Aligned_cols=39 Identities=10% Similarity=-0.037 Sum_probs=29.6
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
|||+++.-...+. ..-.-..+..++++|.+.||+|.++.
T Consensus 1 ~~v~v~~gg~s~e--~~~sl~s~~~i~~al~~~g~~~~~i~ 39 (299)
T PRK14571 1 MRVALLMGGVSRE--REISLRSGERVKKALEKLGYEVTVFD 39 (299)
T ss_pred CeEEEEeCCCCCC--ccchHHHHHHHHHHHHHcCCeEEEEc
Confidence 7888887665553 23334667789999999999999985
No 483
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=22.15 E-value=7.4e+02 Score=29.06 Aligned_cols=108 Identities=11% Similarity=0.018 Sum_probs=64.0
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh----CCEEEEcCCCCCCchHHHHHH---hcCC
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA----ADIVLVPSIYEPCGLAQMIGM---RYGA 508 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~----aDi~l~PS~~E~~gl~~lEAm---a~G~ 508 (596)
.+++|+.+. ......+.......| ....+.-+.++....+.. .|++++ ...+..|..+++.+ ...+
T Consensus 698 ~~ILvVddd--~~~~~~l~~~L~~~G----~~v~~~~s~~~al~~l~~~~~~~DlVll-~~~~~~g~~l~~~l~~~~~~i 770 (828)
T PRK13837 698 ETVLLVEPD--DATLERYEEKLAALG----YEPVGFSTLAAAIAWISKGPERFDLVLV-DDRLLDEEQAAAALHAAAPTL 770 (828)
T ss_pred CEEEEEcCC--HHHHHHHHHHHHHCC----CEEEEeCCHHHHHHHHHhCCCCceEEEE-CCCCCCHHHHHHHHHhhCCCC
Confidence 467888872 334455555555544 334455555556666643 588888 44444555554444 3456
Q ss_pred ceEEe-CCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 509 VPVVR-KTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 509 pvI~s-~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
|+|.. ..+.......-. ..| ++++..|.|.++|...|..++.
T Consensus 771 pIIvls~~~~~~~~~~~~-----~~G-~d~L~KP~~~~~L~~~l~~~l~ 813 (828)
T PRK13837 771 PIILGGNSKTMALSPDLL-----ASV-AEILAKPISSRTLAYALRTALA 813 (828)
T ss_pred CEEEEeCCCchhhhhhHh-----hcc-CcEEeCCCCHHHHHHHHHHHHc
Confidence 77763 333322222111 114 8999999999999999998886
No 484
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=22.11 E-value=1.1e+02 Score=31.44 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=20.2
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+-.-..++++|.++|++|.++..
T Consensus 13 GatGfiG~~l~~~L~~~G~~V~~~~r 38 (340)
T PLN02653 13 GITGQDGSYLTEFLLSKGYEVHGIIR 38 (340)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEec
Confidence 55555556889999999999998863
No 485
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=22.04 E-value=1.1e+02 Score=32.25 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=22.5
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
|+|++| || +.+-...|.+|+++|++|.|+-.
T Consensus 1 ~~v~IV----------G~-Gi~Gls~A~~l~~~g~~V~vle~ 31 (416)
T PRK00711 1 MRVVVL----------GS-GVIGVTSAWYLAQAGHEVTVIDR 31 (416)
T ss_pred CEEEEE----------CC-cHHHHHHHHHHHHCCCEEEEEeC
Confidence 678877 33 34444578888999999999853
No 486
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=22.02 E-value=1.2e+02 Score=31.10 Aligned_cols=33 Identities=30% Similarity=0.294 Sum_probs=25.5
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+|||.++. .+.+=+.||..|++.||+|.++...
T Consensus 1 ~~kI~ViG-----------aGswGTALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 1 MMKIAVIG-----------AGSWGTALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred CceEEEEc-----------CChHHHHHHHHHHhcCCeeEEEecC
Confidence 36777772 2556678999999999999999843
No 487
>PRK06483 dihydromonapterin reductase; Provisional
Probab=22.00 E-value=1.2e+02 Score=28.97 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=20.4
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+..-..+++.|+++|++|.++..
T Consensus 9 Gas~gIG~~ia~~l~~~G~~V~~~~r 34 (236)
T PRK06483 9 GAGQRIGLALAWHLLAQGQPVIVSYR 34 (236)
T ss_pred CCCChHHHHHHHHHHHCCCeEEEEeC
Confidence 55555556889999999999988864
No 488
>CHL00175 minD septum-site determining protein; Validated
Probab=21.82 E-value=1.7e+02 Score=29.09 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=27.3
Q ss_pred CceeEEEEeecccccccccCH--HHHHhHHHHHHHhcCCeEEEEe
Q 043397 107 NLMHIIHITAEMAPIAKVGGL--GDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~--~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
+++||+.|+.. .||+ .+.+.+||.+|++.|++|.++=
T Consensus 13 ~~~~vi~v~s~------KGGvGKTt~a~nLA~~La~~g~~vlliD 51 (281)
T CHL00175 13 TMSRIIVITSG------KGGVGKTTTTANLGMSIARLGYRVALID 51 (281)
T ss_pred CCceEEEEEcC------CCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 34577777643 3444 5778899999999999988884
No 489
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.81 E-value=7.1e+02 Score=23.78 Aligned_cols=92 Identities=16% Similarity=0.192 Sum_probs=56.8
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHH-HhCCE
Q 043397 408 LVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLY-AAADI 486 (596)
Q Consensus 408 ~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~-a~aDi 486 (596)
+++=+|.+...+ .+++..+.+.+|++ + .....++.+.+++.++ ..+.|-.+.+++...+ ..+|+
T Consensus 68 ~~vGaGTV~~~~-------~~~~a~~aGA~Fiv--s---P~~~~~v~~~~~~~~i---~~iPG~~T~~E~~~A~~~Gad~ 132 (213)
T PRK06552 68 VLIGAGTVLDAV-------TARLAILAGAQFIV--S---PSFNRETAKICNLYQI---PYLPGCMTVTEIVTALEAGSEI 132 (213)
T ss_pred eEEeeeeCCCHH-------HHHHHHHcCCCEEE--C---CCCCHHHHHHHHHcCC---CEECCcCCHHHHHHHHHcCCCE
Confidence 555666654332 23334445888888 3 3355677777777654 6777988888887777 77887
Q ss_pred E-EEcCCCCCCchHHHHHHhc---CCceEEeCCCCc
Q 043397 487 V-LVPSIYEPCGLAQMIGMRY---GAVPVVRKTGGL 518 (596)
Q Consensus 487 ~-l~PS~~E~~gl~~lEAma~---G~pvI~s~~gg~ 518 (596)
+ ++|. +.+|...+.++.. ++|++ .+||+
T Consensus 133 vklFPa--~~~G~~~ik~l~~~~p~ip~~--atGGI 164 (213)
T PRK06552 133 VKLFPG--STLGPSFIKAIKGPLPQVNVM--VTGGV 164 (213)
T ss_pred EEECCc--ccCCHHHHHHHhhhCCCCEEE--EECCC
Confidence 6 5563 4566666665544 34444 44553
No 490
>PLN02240 UDP-glucose 4-epimerase
Probab=21.77 E-value=1.2e+02 Score=31.24 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=20.4
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
||.+..-..+++.|.++||+|.++.
T Consensus 12 GatG~iG~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 12 GGAGYIGSHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEe
Confidence 5556666688999999999998885
No 491
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=21.77 E-value=1.3e+02 Score=28.67 Aligned_cols=27 Identities=19% Similarity=0.103 Sum_probs=20.5
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||.+..-..+++.|.++||+|.++...
T Consensus 12 Gasg~iG~~l~~~l~~~g~~v~~~~r~ 38 (246)
T PRK05653 12 GASRGIGRAIALRLAADGAKVVIYDSN 38 (246)
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 555555568899999999998777643
No 492
>PRK06914 short chain dehydrogenase; Provisional
Probab=21.74 E-value=1.2e+02 Score=29.96 Aligned_cols=27 Identities=11% Similarity=-0.072 Sum_probs=21.2
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||.+..-..+++.|+++|++|.++...
T Consensus 10 Gasg~iG~~la~~l~~~G~~V~~~~r~ 36 (280)
T PRK06914 10 GASSGFGLLTTLELAKKGYLVIATMRN 36 (280)
T ss_pred CCCchHHHHHHHHHHhCCCEEEEEeCC
Confidence 555666668899999999999888643
No 493
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.70 E-value=1.2e+02 Score=29.06 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.0
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEE
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIM 148 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi 148 (596)
||.+..-..+++.|.++|++|.++
T Consensus 12 Gasg~iG~~la~~l~~~g~~v~~~ 35 (247)
T PRK05565 12 GASGGIGRAIAELLAKEGAKVVIA 35 (247)
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEE
Confidence 555666678999999999999888
No 494
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=21.68 E-value=2e+02 Score=26.31 Aligned_cols=36 Identities=22% Similarity=0.209 Sum_probs=25.7
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
+..+|++++- .|.-+--...+|+.|.++|++|+|+.
T Consensus 24 ~~~~v~il~G-------~GnNGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 24 KGPRVLILCG-------PGNNGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp TT-EEEEEE--------SSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCeEEEEEC-------CCCChHHHHHHHHHHHHCCCeEEEEE
Confidence 4468888873 24445555678999999999999965
No 495
>PRK05868 hypothetical protein; Validated
Probab=21.67 E-value=1.1e+02 Score=31.93 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=21.9
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
+++|+++. ||..- ..+|.+|+++|++|+|+=
T Consensus 1 ~~~V~IvG---------gG~aG--l~~A~~L~~~G~~v~viE 31 (372)
T PRK05868 1 MKTVVVSG---------ASVAG--TAAAYWLGRHGYSVTMVE 31 (372)
T ss_pred CCeEEEEC---------CCHHH--HHHHHHHHhCCCCEEEEc
Confidence 45788873 44333 456777899999999984
No 496
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=21.53 E-value=1.8e+02 Score=27.34 Aligned_cols=37 Identities=11% Similarity=-0.027 Sum_probs=25.5
Q ss_pred eeEEEEeecccccccccCHH-HHHhHHHHHHHhcCCeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLG-DVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~-~~~~~La~aL~~~Gh~V~vi~ 149 (596)
|||++|+.... .++.. ..+...++.+.+.|++|+++-
T Consensus 1 mkIl~I~GSpr----~~S~t~~l~~~~~~~l~~~g~ev~~id 38 (191)
T PRK10569 1 MRVITLAGSPR----FPSRSSALLEYAREWLNGLGVEVYHWN 38 (191)
T ss_pred CEEEEEEcCCC----CCChHHHHHHHHHHHHHhCCCEEEEEE
Confidence 79999976543 34433 445556667777899999874
No 497
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=21.50 E-value=2e+02 Score=25.68 Aligned_cols=87 Identities=13% Similarity=0.032 Sum_probs=47.6
Q ss_pred EEEEeccCHHHHHHHHHhC----C-EEEEcCCCCCCchHHHHHHh-cCCceEE---eCCCCccccccccCCCCCCCccce
Q 043397 466 TRILLMYSEELSHMLYAAA----D-IVLVPSIYEPCGLAQMIGMR-YGAVPVV---RKTGGLADTVFDVDDPSNHEKANG 536 (596)
Q Consensus 466 V~~~g~~~~~~l~~~~a~a----D-i~l~PS~~E~~gl~~lEAma-~G~pvI~---s~~gg~~e~i~~~~~~~~~~~~~G 536 (596)
+.|.-.=.+-++.+.+++| | +++.|--+--.+..+.+|++ .++|+|= |++- .+|-...- ...+.-..|
T Consensus 46 v~~~QSN~EGelId~I~~a~~~~dgiiINpga~THtSiAl~DAl~~~~~P~VEVHiSNi~-aRE~fR~~--S~is~~a~G 122 (146)
T PRK05395 46 LEFFQSNHEGELIDRIHEARDGADGIIINPGAYTHTSVALRDALAAVSIPVIEVHLSNIH-AREEFRHH--SYISDVAVG 122 (146)
T ss_pred EEEEeeCcHHHHHHHHHhcccCCcEEEECchHHHHHHHHHHHHHHcCCCCEEEEecCCcc-cccccccc--ccccccceE
Confidence 5555444444455555444 3 55667666667888888874 6777774 3332 23322110 001124566
Q ss_pred EEEeCCCHHHHHHHHHHHHH
Q 043397 537 FVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 537 ~lv~~~d~~~la~~i~~ll~ 556 (596)
.++-- -.+...-+|+.+++
T Consensus 123 ~I~G~-G~~gY~lAl~al~~ 141 (146)
T PRK05395 123 VICGF-GADGYLLALEALAE 141 (146)
T ss_pred EEeeC-CHHhHHHHHHHHHH
Confidence 65543 56777777777765
No 498
>PRK11519 tyrosine kinase; Provisional
Probab=21.44 E-value=2.9e+02 Score=31.88 Aligned_cols=38 Identities=16% Similarity=0.059 Sum_probs=30.3
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
+-|++.||...+ .-|-...+.+||.+|+..|+.|.++=
T Consensus 525 ~~kvi~vts~~~----geGKTt~a~nLA~~la~~g~rvLlID 562 (719)
T PRK11519 525 QNNVLMMTGVSP----SIGKTFVCANLAAVISQTNKRVLLID 562 (719)
T ss_pred CceEEEEECCCC----CCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 457888876542 35668889999999999999999985
No 499
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=21.43 E-value=1.1e+02 Score=30.57 Aligned_cols=32 Identities=31% Similarity=0.156 Sum_probs=24.4
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
|||.+|. .|.+-..++.+|.+.||+|.++...
T Consensus 1 m~I~IIG-----------~G~mG~sla~~L~~~g~~V~~~d~~ 32 (279)
T PRK07417 1 MKIGIVG-----------LGLIGGSLGLDLRSLGHTVYGVSRR 32 (279)
T ss_pred CeEEEEe-----------ecHHHHHHHHHHHHCCCEEEEEECC
Confidence 6777772 3556668999999999999888643
No 500
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=21.30 E-value=1.2e+02 Score=30.08 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=21.6
Q ss_pred ccCHHH--HHhHHHHHHHhcCCeEEEEe
Q 043397 124 VGGLGD--VVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 124 ~GG~~~--~~~~La~aL~~~Gh~V~vi~ 149 (596)
.||+|. .+.+||.+|+++|++|-++=
T Consensus 9 KGGVGKTT~~~nLA~~La~~G~rVLlID 36 (274)
T PRK13235 9 KGGIGKSTTTQNTVAGLAEMGKKVMVVG 36 (274)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEEe
Confidence 477765 57789999999999999983
Done!