Query 043397
Match_columns 596
No_of_seqs 201 out of 2431
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 07:34:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043397.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043397hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vue_A GBSS-I, granule-bound s 100.0 4.3E-64 1.5E-68 549.4 46.7 472 104-594 5-512 (536)
2 1rzu_A Glycogen synthase 1; gl 100.0 2E-49 6.9E-54 430.9 43.9 453 109-595 1-477 (485)
3 2qzs_A Glycogen synthase; glyc 100.0 8.3E-49 2.8E-53 426.1 45.5 453 109-595 1-478 (485)
4 3fro_A GLGA glycogen synthase; 100.0 1.9E-48 6.4E-53 416.5 44.1 419 107-595 1-432 (439)
5 3c48_A Predicted glycosyltrans 100.0 4.8E-44 1.6E-48 383.1 37.9 402 100-595 12-427 (438)
6 2r60_A Glycosyl transferase, g 100.0 3.4E-44 1.2E-48 391.3 35.0 413 107-595 6-461 (499)
7 3okp_A GDP-mannose-dependent a 100.0 3E-42 1E-46 363.2 36.3 365 107-595 3-381 (394)
8 3s28_A Sucrose synthase 1; gly 100.0 3.4E-43 1.2E-47 396.3 29.9 429 105-593 275-769 (816)
9 2jjm_A Glycosyl transferase, g 100.0 7.7E-41 2.6E-45 353.4 34.9 368 109-595 14-387 (394)
10 2x6q_A Trehalose-synthase TRET 100.0 3.5E-40 1.2E-44 350.9 35.1 365 105-594 37-415 (416)
11 2gek_A Phosphatidylinositol ma 100.0 2.6E-40 9E-45 350.0 28.6 367 101-595 13-385 (406)
12 2iw1_A Lipopolysaccharide core 100.0 3.6E-41 1.2E-45 352.6 21.0 366 109-596 1-374 (374)
13 3oy2_A Glycosyltransferase B73 100.0 4.6E-39 1.6E-43 341.9 32.0 355 109-595 1-392 (413)
14 2iuy_A Avigt4, glycosyltransfe 100.0 3.1E-39 1.1E-43 334.4 27.2 314 108-595 3-337 (342)
15 3nb0_A Glycogen [starch] synth 100.0 5.9E-38 2E-42 338.0 32.5 446 111-595 30-635 (725)
16 2x0d_A WSAF; GT4 family, trans 100.0 1.8E-35 6E-40 313.8 21.5 357 105-594 43-410 (413)
17 2hy7_A Glucuronosyltransferase 100.0 2.5E-33 8.6E-38 297.1 18.3 200 316-594 171-380 (406)
18 2vsy_A XCC0866; transferase, g 100.0 1.6E-30 5.4E-35 287.8 31.9 333 105-595 202-561 (568)
19 1f0k_A MURG, UDP-N-acetylgluco 100.0 1.3E-30 4.3E-35 271.9 27.3 338 109-594 7-358 (364)
20 1uqt_A Alpha, alpha-trehalose- 100.0 5.2E-30 1.8E-34 275.5 27.6 316 214-593 102-454 (482)
21 3beo_A UDP-N-acetylglucosamine 100.0 3.8E-29 1.3E-33 261.7 23.6 218 322-591 149-374 (375)
22 1vgv_A UDP-N-acetylglucosamine 100.0 5.7E-29 2E-33 261.2 22.6 290 223-594 76-377 (384)
23 3t5t_A Putative glycosyltransf 100.0 1.7E-27 5.8E-32 253.1 31.2 312 214-593 126-473 (496)
24 2c4m_A Glycogen phosphorylase; 100.0 2.2E-27 7.4E-32 260.0 23.3 461 123-595 112-721 (796)
25 2bfw_A GLGA glycogen synthase; 99.9 5.7E-27 1.9E-31 222.9 19.8 184 357-574 1-194 (200)
26 1l5w_A Maltodextrin phosphoryl 99.9 1.6E-26 5.4E-31 253.2 25.2 378 205-595 253-732 (796)
27 3qhp_A Type 1 capsular polysac 99.9 1.9E-26 6.6E-31 212.5 16.0 160 406-585 2-166 (166)
28 1v4v_A UDP-N-acetylglucosamine 99.9 2.7E-25 9.3E-30 232.7 23.2 216 322-595 145-366 (376)
29 2f9f_A First mannosyl transfer 99.9 1.6E-24 5.6E-29 202.2 15.5 150 404-571 21-173 (177)
30 2xci_A KDO-transferase, 3-deox 99.9 2.4E-23 8.2E-28 217.8 25.0 197 319-574 149-358 (374)
31 2gj4_A Glycogen phosphorylase, 99.9 1.6E-24 5.4E-29 238.2 14.4 348 235-594 320-755 (824)
32 3rhz_A GTF3, nucleotide sugar 99.9 3.7E-20 1.3E-24 189.8 25.9 247 233-587 72-330 (339)
33 3dzc_A UDP-N-acetylglucosamine 99.8 1.8E-19 6E-24 189.8 25.3 221 322-590 165-394 (396)
34 3otg_A CALG1; calicheamicin, T 99.8 1.4E-19 4.6E-24 191.6 22.9 161 404-592 241-409 (412)
35 3ot5_A UDP-N-acetylglucosamine 99.8 6.4E-19 2.2E-23 185.8 24.6 217 323-593 169-391 (403)
36 3s2u_A UDP-N-acetylglucosamine 99.8 2.2E-17 7.4E-22 172.0 29.3 163 404-590 178-355 (365)
37 2iyf_A OLED, oleandomycin glyc 99.8 2E-16 6.7E-21 168.4 28.8 160 404-592 231-400 (430)
38 4fzr_A SSFS6; structural genom 99.7 1.8E-17 6.1E-22 174.7 17.9 153 404-587 226-396 (398)
39 3oti_A CALG3; calicheamicin, T 99.7 5E-16 1.7E-20 163.6 23.5 154 405-590 232-396 (398)
40 3ia7_A CALG4; glycosysltransfe 99.7 4.5E-15 1.5E-19 156.1 28.4 161 404-593 230-400 (402)
41 3tsa_A SPNG, NDP-rhamnosyltran 99.7 4.7E-16 1.6E-20 163.2 16.9 159 405-591 218-388 (391)
42 3rsc_A CALG2; TDP, enediyne, s 99.7 9.5E-15 3.2E-19 154.5 27.0 160 404-592 246-414 (415)
43 2p6p_A Glycosyl transferase; X 99.6 1.6E-13 5.6E-18 143.5 25.3 154 405-590 210-378 (384)
44 4hwg_A UDP-N-acetylglucosamine 99.6 1.7E-14 5.8E-19 150.7 17.1 216 323-590 146-374 (385)
45 2yjn_A ERYCIII, glycosyltransf 99.4 4.1E-12 1.4E-16 135.5 20.6 155 406-591 268-435 (441)
46 2iya_A OLEI, oleandomycin glyc 99.4 5.3E-10 1.8E-14 118.4 34.5 158 405-591 255-421 (424)
47 3h4t_A Glycosyltransferase GTF 99.3 4E-10 1.4E-14 118.6 24.4 155 404-591 220-382 (404)
48 3q3e_A HMW1C-like glycosyltran 99.3 2.5E-10 8.4E-15 123.3 22.1 184 397-592 432-626 (631)
49 4amg_A Snogd; transferase, pol 99.2 2.5E-10 8.5E-15 119.7 19.8 155 405-589 237-398 (400)
50 1iir_A Glycosyltransferase GTF 99.2 1.3E-09 4.6E-14 115.0 24.8 154 405-594 238-399 (415)
51 1rrv_A Glycosyltransferase GTF 99.1 5E-09 1.7E-13 110.6 23.3 134 405-572 237-380 (416)
52 2o6l_A UDP-glucuronosyltransfe 99.1 2.8E-10 9.5E-15 104.5 10.3 133 405-569 21-162 (170)
53 1ygp_A Yeast glycogen phosphor 99.0 2.9E-09 9.9E-14 116.8 15.8 222 312-540 466-760 (879)
54 4gyw_A UDP-N-acetylglucosamine 98.4 1.1E-05 3.8E-10 90.7 21.5 180 394-593 513-705 (723)
55 1xv5_A AGT, DNA alpha-glucosyl 98.1 0.0051 1.7E-07 55.9 26.9 156 409-574 200-380 (401)
56 3hbf_A Flavonoid 3-O-glucosylt 97.9 0.015 5.2E-07 61.3 31.3 134 405-556 273-413 (454)
57 2vch_A Hydroquinone glucosyltr 97.9 0.023 7.7E-07 60.6 32.1 134 405-556 268-428 (480)
58 3hbm_A UDP-sugar hydrolase; PS 97.8 0.0008 2.8E-08 66.3 18.0 94 406-514 158-251 (282)
59 2acv_A Triterpene UDP-glucosyl 97.8 0.034 1.2E-06 58.9 31.1 134 405-556 276-424 (463)
60 3tov_A Glycosyl transferase fa 97.5 0.044 1.5E-06 55.6 26.3 108 396-514 177-287 (349)
61 1psw_A ADP-heptose LPS heptosy 97.0 0.0099 3.4E-07 60.2 15.3 113 391-513 167-286 (348)
62 2c1x_A UDP-glucose flavonoid 3 96.8 0.012 4E-07 62.3 14.0 132 404-556 270-411 (456)
63 2pq6_A UDP-glucuronosyl/UDP-gl 96.5 0.046 1.6E-06 58.2 16.2 143 405-571 295-448 (482)
64 3l7i_A Teichoic acid biosynthe 96.3 0.022 7.6E-07 64.1 13.0 189 322-556 477-682 (729)
65 2jzc_A UDP-N-acetylglucosamine 95.9 0.009 3.1E-07 56.5 5.7 74 465-555 115-197 (224)
66 2gt1_A Lipopolysaccharide hept 94.1 0.2 6.8E-06 50.0 10.0 98 405-513 178-278 (326)
67 4g65_A TRK system potassium up 92.2 10 0.00034 39.7 20.0 96 449-556 266-366 (461)
68 2zay_A Response regulator rece 85.2 15 0.00053 30.6 13.0 110 435-558 8-129 (147)
69 3h5i_A Response regulator/sens 83.8 17 0.00059 30.1 13.5 108 435-556 5-123 (140)
70 3kht_A Response regulator; PSI 83.2 12 0.00039 31.3 11.1 111 435-557 5-128 (144)
71 1k68_A Phytochrome response re 82.5 13 0.00044 30.5 11.1 110 435-556 2-130 (140)
72 4b4o_A Epimerase family protei 82.4 1.1 3.7E-05 43.8 4.6 32 109-150 1-32 (298)
73 3cg4_A Response regulator rece 81.9 20 0.00069 29.5 12.2 110 434-557 6-127 (142)
74 3jte_A Response regulator rece 81.8 11 0.00039 31.2 10.5 107 436-556 4-122 (143)
75 3to5_A CHEY homolog; alpha(5)b 80.0 8.9 0.0003 32.5 9.0 113 434-556 11-132 (134)
76 3heb_A Response regulator rece 80.0 15 0.00051 31.0 10.8 112 435-558 4-136 (152)
77 3h1g_A Chemotaxis protein CHEY 77.8 16 0.00055 29.7 10.0 109 435-556 5-126 (129)
78 3gt7_A Sensor protein; structu 77.6 25 0.00085 29.7 11.5 110 435-558 7-128 (154)
79 3grc_A Sensor protein, kinase; 77.5 14 0.00049 30.4 9.7 109 435-557 6-127 (140)
80 3auf_A Glycinamide ribonucleot 76.9 20 0.00067 33.5 11.1 99 105-253 19-119 (229)
81 1i3c_A Response regulator RCP1 76.7 24 0.00083 29.5 11.1 110 435-556 8-136 (149)
82 1k66_A Phytochrome response re 75.9 19 0.00065 29.9 10.1 111 435-557 6-138 (149)
83 3cg0_A Response regulator rece 75.4 32 0.0011 28.1 12.0 108 435-556 9-127 (140)
84 3gl9_A Response regulator; bet 75.3 30 0.001 27.7 11.0 109 437-556 4-121 (122)
85 3t6k_A Response regulator rece 75.0 27 0.00093 28.7 10.8 107 436-556 5-123 (136)
86 2pln_A HP1043, response regula 74.7 22 0.00077 29.1 10.2 105 435-556 18-132 (137)
87 3hzh_A Chemotaxis response reg 73.7 23 0.00078 30.1 10.2 65 484-556 84-156 (157)
88 2qvg_A Two component response 72.1 36 0.0012 27.9 10.9 113 435-556 7-134 (143)
89 3cnb_A DNA-binding response re 71.9 29 0.00099 28.4 10.3 110 435-557 8-130 (143)
90 3kcn_A Adenylate cyclase homol 71.9 43 0.0015 27.9 12.1 107 435-556 4-122 (151)
91 4e7p_A Response regulator; DNA 71.6 35 0.0012 28.5 10.8 78 471-556 52-139 (150)
92 3eul_A Possible nitrate/nitrit 71.0 21 0.0007 30.0 9.2 66 483-556 61-134 (152)
93 2r25_B Osmosensing histidine p 70.5 29 0.00098 28.4 9.8 109 436-557 3-127 (133)
94 1dbw_A Transcriptional regulat 70.4 40 0.0014 27.0 10.8 108 435-556 3-120 (126)
95 2ywr_A Phosphoribosylglycinami 69.3 23 0.0008 32.6 9.6 33 108-149 1-35 (216)
96 3hdv_A Response regulator; PSI 69.3 30 0.001 28.2 9.7 108 435-556 7-126 (136)
97 3ilh_A Two component response 68.7 35 0.0012 28.1 10.1 109 436-556 10-138 (146)
98 3e8x_A Putative NAD-dependent 68.2 4.8 0.00016 37.5 4.7 35 108-152 21-55 (236)
99 1jbe_A Chemotaxis protein CHEY 67.9 44 0.0015 26.7 10.3 109 435-556 4-124 (128)
100 3r0j_A Possible two component 67.2 53 0.0018 30.4 12.0 112 435-557 23-141 (250)
101 4dad_A Putative pilus assembly 67.1 16 0.00054 30.5 7.5 66 483-556 67-140 (146)
102 1yio_A Response regulatory pro 66.9 54 0.0018 29.1 11.6 107 436-556 5-121 (208)
103 3f6p_A Transcriptional regulat 66.8 46 0.0016 26.4 10.6 107 436-556 3-118 (120)
104 1qkk_A DCTD, C4-dicarboxylate 66.8 34 0.0012 28.7 9.8 108 435-556 3-120 (155)
105 2qsj_A DNA-binding response re 66.5 26 0.00088 29.4 8.9 110 436-557 4-124 (154)
106 3hv2_A Response regulator/HD d 66.3 38 0.0013 28.3 10.0 77 472-556 45-132 (153)
107 3ew7_A LMO0794 protein; Q8Y8U8 66.1 5.5 0.00019 36.3 4.6 33 109-151 1-33 (221)
108 3hdg_A Uncharacterized protein 65.9 37 0.0013 27.6 9.6 108 435-556 7-124 (137)
109 3av3_A Phosphoribosylglycinami 65.6 42 0.0014 30.8 10.4 96 108-253 3-100 (212)
110 3h2s_A Putative NADH-flavin re 65.4 5.8 0.0002 36.4 4.6 33 109-151 1-33 (224)
111 2rjn_A Response regulator rece 64.7 50 0.0017 27.5 10.4 108 435-556 7-125 (154)
112 3n53_A Response regulator rece 64.5 57 0.0019 26.6 13.6 106 436-556 4-121 (140)
113 2qzj_A Two-component response 64.3 38 0.0013 27.7 9.4 108 435-556 4-120 (136)
114 2d1p_A TUSD, hypothetical UPF0 63.9 11 0.00039 32.1 5.8 40 107-149 11-51 (140)
115 2qr3_A Two-component system re 63.5 47 0.0016 27.0 9.8 107 436-556 4-125 (140)
116 2j48_A Two-component sensor ki 63.3 25 0.00087 27.4 7.8 106 436-555 2-116 (119)
117 3dhn_A NAD-dependent epimerase 63.2 7 0.00024 35.9 4.7 34 108-151 4-37 (227)
118 3nhm_A Response regulator; pro 63.1 57 0.002 26.2 13.8 109 436-557 5-122 (133)
119 2q5c_A NTRC family transcripti 63.0 40 0.0014 30.5 9.7 99 421-557 80-183 (196)
120 4f3y_A DHPR, dihydrodipicolina 62.8 8 0.00027 37.3 5.1 44 477-520 67-110 (272)
121 3cz5_A Two-component response 62.6 66 0.0023 26.7 11.1 109 435-556 5-124 (153)
122 3lua_A Response regulator rece 62.2 25 0.00085 28.9 7.8 108 435-556 4-126 (140)
123 1lss_A TRK system potassium up 61.7 8.3 0.00028 32.1 4.6 33 108-151 4-36 (140)
124 2hy5_A Putative sulfurtransfer 61.5 12 0.00042 31.3 5.5 38 109-149 1-39 (130)
125 3hzh_A Chemotaxis response reg 61.3 66 0.0023 27.0 10.6 32 105-146 33-64 (157)
126 3crn_A Response regulator rece 60.1 66 0.0023 25.9 10.9 107 436-556 4-120 (132)
127 3cfy_A Putative LUXO repressor 60.1 69 0.0024 26.1 10.3 106 437-556 6-121 (137)
128 4gi5_A Quinone reductase; prot 60.0 9.8 0.00034 36.8 5.2 39 107-149 21-60 (280)
129 3eod_A Protein HNR; response r 59.6 66 0.0022 25.7 10.9 108 435-556 7-125 (130)
130 3dqp_A Oxidoreductase YLBE; al 59.3 7 0.00024 35.8 3.9 33 109-151 1-33 (219)
131 2qxy_A Response regulator; reg 59.3 45 0.0015 27.3 8.9 108 435-556 4-120 (142)
132 3f6c_A Positive transcription 58.9 64 0.0022 25.9 9.8 107 436-556 2-119 (134)
133 3m6m_D Sensory/regulatory prot 58.4 77 0.0026 26.1 11.5 108 435-556 14-135 (143)
134 3ty2_A 5'-nucleotidase SURE; s 58.3 8.6 0.00029 36.6 4.3 42 106-155 9-50 (261)
135 1ys7_A Transcriptional regulat 57.3 1.1E+02 0.0037 27.5 14.1 112 435-557 7-125 (233)
136 3rqi_A Response regulator prot 57.3 96 0.0033 26.9 11.3 108 435-556 7-124 (184)
137 2x4g_A Nucleoside-diphosphate- 56.8 9.9 0.00034 37.4 4.8 35 107-151 12-46 (342)
138 1zgz_A Torcad operon transcrip 55.7 73 0.0025 25.0 10.6 107 436-556 3-118 (122)
139 2gwr_A DNA-binding response re 55.7 79 0.0027 28.8 10.8 107 436-556 6-121 (238)
140 3r6d_A NAD-dependent epimerase 55.7 12 0.00042 34.2 4.9 36 107-151 3-39 (221)
141 3tqr_A Phosphoribosylglycinami 55.7 1.2E+02 0.0042 27.7 12.0 97 107-253 4-101 (215)
142 2pju_A Propionate catabolism o 55.6 69 0.0023 29.6 10.0 104 421-558 92-195 (225)
143 3f6r_A Flavodoxin; FMN binding 55.3 14 0.00047 31.5 4.9 37 108-149 1-37 (148)
144 4id9_A Short-chain dehydrogena 55.0 9 0.00031 37.8 4.1 37 104-150 15-51 (347)
145 2jba_A Phosphate regulon trans 54.6 43 0.0015 26.7 7.8 109 437-556 4-121 (127)
146 3d7l_A LIN1944 protein; APC893 54.4 11 0.00037 33.9 4.2 32 107-149 2-33 (202)
147 1kgs_A DRRD, DNA binding respo 54.1 84 0.0029 28.1 10.6 111 436-557 3-120 (225)
148 1mvo_A PHOP response regulator 54.1 84 0.0029 25.2 11.4 107 436-556 4-120 (136)
149 3ijp_A DHPR, dihydrodipicolina 53.7 10 0.00036 36.8 4.1 43 477-519 82-124 (288)
150 3c3m_A Response regulator rece 52.9 91 0.0031 25.3 11.7 110 436-556 4-122 (138)
151 3l4b_C TRKA K+ channel protien 52.5 13 0.00044 34.1 4.5 32 109-151 1-32 (218)
152 3lte_A Response regulator; str 52.3 88 0.003 24.9 9.5 108 435-556 6-124 (132)
153 3nbm_A PTS system, lactose-spe 52.3 23 0.00077 28.8 5.3 40 106-151 4-43 (108)
154 3cu5_A Two component transcrip 52.2 95 0.0033 25.3 11.8 78 471-556 35-122 (141)
155 2pl1_A Transcriptional regulat 52.2 82 0.0028 24.6 11.6 106 437-556 2-117 (121)
156 1a04_A Nitrate/nitrite respons 51.9 1.3E+02 0.0044 26.7 12.1 108 436-556 6-124 (215)
157 1tmy_A CHEY protein, TMY; chem 51.9 83 0.0029 24.5 10.5 107 436-555 3-119 (120)
158 3to5_A CHEY homolog; alpha(5)b 51.4 97 0.0033 25.8 9.6 31 107-147 11-41 (134)
159 2fzv_A Putative arsenical resi 51.1 27 0.00091 33.7 6.6 40 106-149 56-96 (279)
160 1p6q_A CHEY2; chemotaxis, sign 51.0 77 0.0026 25.2 8.9 108 436-556 7-126 (129)
161 3ic5_A Putative saccharopine d 50.8 17 0.00059 29.0 4.6 33 108-151 5-38 (118)
162 2qv0_A Protein MRKE; structura 50.6 99 0.0034 25.1 12.5 109 435-556 9-126 (143)
163 1mb3_A Cell division response 50.4 90 0.0031 24.5 10.2 106 437-556 3-120 (124)
164 1hdo_A Biliverdin IX beta redu 50.2 15 0.00053 32.7 4.6 33 109-151 4-36 (206)
165 4b4t_W RPN10, 26S proteasome r 50.0 74 0.0025 30.3 9.5 57 404-461 106-162 (268)
166 2pq6_A UDP-glucuronosyl/UDP-gl 49.7 14 0.00048 38.7 4.8 38 108-151 8-45 (482)
167 3hly_A Flavodoxin-like domain; 49.3 20 0.00068 31.2 5.0 36 109-149 1-36 (161)
168 3oh8_A Nucleoside-diphosphate 49.2 14 0.00049 39.0 4.8 34 108-151 147-180 (516)
169 3b2n_A Uncharacterized protein 49.2 1E+02 0.0035 24.7 11.1 107 437-556 5-122 (133)
170 1p2f_A Response regulator; DRR 49.0 57 0.0019 29.3 8.4 106 437-557 4-117 (220)
171 2c20_A UDP-glucose 4-epimerase 48.5 15 0.00052 35.8 4.6 26 125-150 8-33 (330)
172 3mm4_A Histidine kinase homolo 48.5 89 0.003 27.9 9.6 107 435-556 61-195 (206)
173 2rdm_A Response regulator rece 48.2 1E+02 0.0035 24.5 12.2 110 435-557 5-123 (132)
174 1jx7_A Hypothetical protein YC 48.2 25 0.00087 28.3 5.2 39 109-150 2-42 (117)
175 3orf_A Dihydropteridine reduct 47.8 16 0.00056 34.2 4.5 37 106-151 19-55 (251)
176 3vps_A TUNA, NAD-dependent epi 47.6 15 0.00052 35.5 4.4 34 108-151 7-40 (321)
177 2a9o_A Response regulator; ess 47.3 98 0.0033 24.0 9.9 106 437-556 3-117 (120)
178 3ko8_A NAD-dependent epimerase 47.2 16 0.00055 35.3 4.5 32 109-150 1-32 (312)
179 4hb9_A Similarities with proba 47.1 16 0.00055 36.7 4.6 30 108-148 1-30 (412)
180 4e7p_A Response regulator; DNA 47.1 1.1E+02 0.0039 25.1 9.6 29 104-142 16-44 (150)
181 2dkn_A 3-alpha-hydroxysteroid 47.0 17 0.00058 33.8 4.5 26 125-150 8-33 (255)
182 1rpn_A GDP-mannose 4,6-dehydra 47.0 17 0.00057 35.6 4.6 35 107-151 13-47 (335)
183 1dz3_A Stage 0 sporulation pro 46.6 1.1E+02 0.0037 24.3 10.0 108 436-556 3-122 (130)
184 1ydg_A Trp repressor binding p 46.5 23 0.00078 32.2 5.2 38 107-149 5-42 (211)
185 1xhf_A DYE resistance, aerobic 46.4 1E+02 0.0036 24.1 10.7 107 436-556 4-119 (123)
186 1zh2_A KDP operon transcriptio 46.4 76 0.0026 24.8 8.0 106 437-556 3-117 (121)
187 3da8_A Probable 5'-phosphoribo 46.2 1.4E+02 0.0049 27.2 10.5 98 105-253 9-107 (215)
188 3t8y_A CHEB, chemotaxis respon 46.2 1.3E+02 0.0046 25.3 10.3 110 434-556 24-154 (164)
189 2zki_A 199AA long hypothetical 46.1 20 0.00069 32.1 4.7 37 107-149 3-39 (199)
190 1fjh_A 3alpha-hydroxysteroid d 46.1 18 0.00061 33.9 4.5 33 109-150 1-33 (257)
191 3rpe_A MDAB, modulator of drug 46.0 23 0.0008 32.7 5.1 46 105-150 22-68 (218)
192 3m2p_A UDP-N-acetylglucosamine 45.9 18 0.00063 34.9 4.7 27 125-151 9-35 (311)
193 1wcv_1 SOJ, segregation protei 45.8 21 0.0007 33.6 4.9 37 107-149 4-42 (257)
194 3llv_A Exopolyphosphatase-rela 45.7 19 0.00064 30.2 4.1 33 108-151 6-38 (141)
195 3c1o_A Eugenol synthase; pheny 45.6 12 0.0004 36.5 3.2 35 107-151 3-37 (321)
196 3ruf_A WBGU; rossmann fold, UD 45.5 19 0.00065 35.5 4.8 34 108-151 25-58 (351)
197 1jay_A Coenzyme F420H2:NADP+ o 45.4 18 0.00062 32.8 4.3 33 109-151 1-33 (212)
198 3of5_A Dethiobiotin synthetase 45.2 29 0.00099 32.2 5.7 40 107-150 2-41 (228)
199 1jkx_A GART;, phosphoribosylgl 45.2 1.5E+02 0.005 27.0 10.4 95 109-253 1-97 (212)
200 2phj_A 5'-nucleotidase SURE; S 45.1 18 0.00062 34.2 4.2 40 108-155 1-40 (251)
201 2pzm_A Putative nucleotide sug 44.7 20 0.00067 35.1 4.7 34 107-150 19-52 (330)
202 4fyk_A Deoxyribonucleoside 5'- 44.5 1.5E+02 0.0052 25.4 10.9 72 478-556 63-141 (152)
203 3guy_A Short-chain dehydrogena 44.2 16 0.00055 33.6 3.8 34 109-151 1-34 (230)
204 3b6i_A Flavoprotein WRBA; flav 43.8 24 0.00082 31.5 4.8 37 108-149 1-38 (198)
205 3ius_A Uncharacterized conserv 43.8 18 0.00063 34.3 4.2 33 108-151 5-37 (286)
206 2vzf_A NADH-dependent FMN redu 43.6 24 0.00082 31.7 4.8 39 108-149 2-41 (197)
207 3mc3_A DSRE/DSRF-like family p 43.1 34 0.0011 28.7 5.3 42 107-151 14-55 (134)
208 2g1u_A Hypothetical protein TM 43.0 37 0.0013 28.9 5.8 34 107-151 18-51 (155)
209 1orr_A CDP-tyvelose-2-epimeras 42.5 20 0.0007 35.0 4.5 26 125-150 8-33 (347)
210 2hqr_A Putative transcriptiona 42.3 71 0.0024 28.7 8.0 104 437-557 2-115 (223)
211 2ayx_A Sensor kinase protein R 42.3 1.9E+02 0.0063 26.7 11.1 24 533-556 223-246 (254)
212 2lpm_A Two-component response 42.1 80 0.0027 25.9 7.4 107 435-555 8-120 (123)
213 1f4p_A Flavodoxin; electron tr 41.9 28 0.00095 29.4 4.7 36 109-149 1-36 (147)
214 2c5a_A GDP-mannose-3', 5'-epim 41.8 25 0.00085 35.2 5.0 35 107-151 28-62 (379)
215 2ew2_A 2-dehydropantoate 2-red 41.7 20 0.00069 34.7 4.2 34 107-151 2-35 (316)
216 3qxc_A Dethiobiotin synthetase 41.5 34 0.0012 32.1 5.6 47 100-150 12-58 (242)
217 1bvy_F Protein (cytochrome P45 41.3 22 0.00077 32.0 4.1 37 108-149 21-57 (191)
218 3qvo_A NMRA family protein; st 41.2 18 0.00063 33.4 3.6 36 107-151 21-57 (236)
219 1id1_A Putative potassium chan 41.1 25 0.00086 30.0 4.3 24 128-151 12-35 (153)
220 1t5b_A Acyl carrier protein ph 41.0 29 0.00099 31.0 4.9 40 108-149 1-42 (201)
221 3l77_A Short-chain alcohol deh 40.9 24 0.00082 32.5 4.4 34 109-151 2-35 (235)
222 2p5y_A UDP-glucose 4-epimerase 40.9 22 0.00075 34.3 4.3 25 125-149 7-31 (311)
223 1kyq_A Met8P, siroheme biosynt 40.8 21 0.00071 34.4 3.9 34 108-152 13-46 (274)
224 2a5l_A Trp repressor binding p 40.7 31 0.0011 30.8 5.0 37 108-149 5-41 (200)
225 3doj_A AT3G25530, dehydrogenas 40.7 29 0.001 33.8 5.2 36 105-151 18-53 (310)
226 2q1w_A Putative nucleotide sug 40.7 24 0.00083 34.5 4.7 26 125-150 28-53 (333)
227 1vl8_A Gluconate 5-dehydrogena 40.6 27 0.00091 33.1 4.8 34 109-151 21-54 (267)
228 3q9s_A DNA-binding response re 40.6 1.1E+02 0.0036 28.3 9.1 24 533-556 130-153 (249)
229 3kto_A Response regulator rece 40.3 47 0.0016 27.1 5.8 108 436-557 7-126 (136)
230 3c97_A Signal transduction his 40.2 1.4E+02 0.005 24.0 13.4 108 435-556 10-129 (140)
231 3luf_A Two-component system re 39.8 2.3E+02 0.0079 26.2 14.5 109 434-557 123-245 (259)
232 3sc6_A DTDP-4-dehydrorhamnose 39.7 13 0.00046 35.4 2.5 32 109-150 6-37 (287)
233 1sb8_A WBPP; epimerase, 4-epim 39.7 27 0.00091 34.4 4.8 27 125-151 34-60 (352)
234 1i24_A Sulfolipid biosynthesis 39.6 23 0.0008 35.6 4.5 33 107-149 10-42 (404)
235 4ekn_B Aspartate carbamoyltran 39.6 65 0.0022 31.4 7.4 95 389-497 137-233 (306)
236 2b4a_A BH3024; flavodoxin-like 39.6 1.5E+02 0.005 23.8 11.0 108 434-556 14-130 (138)
237 2b69_A UDP-glucuronate decarbo 39.4 26 0.00089 34.4 4.7 33 108-150 27-59 (343)
238 2pk3_A GDP-6-deoxy-D-LYXO-4-he 39.1 26 0.0009 33.9 4.6 26 125-150 19-44 (321)
239 3r6w_A FMN-dependent NADH-azor 39.1 27 0.00094 31.7 4.5 39 108-149 1-42 (212)
240 3gt7_A Sensor protein; structu 39.1 1.6E+02 0.0056 24.3 9.9 32 107-148 6-37 (154)
241 3slg_A PBGP3 protein; structur 38.5 24 0.00082 35.1 4.3 27 125-151 31-58 (372)
242 2gkg_A Response regulator homo 38.5 1.4E+02 0.0047 23.2 9.9 110 436-556 6-124 (127)
243 3enk_A UDP-glucose 4-epimerase 38.3 29 0.001 33.8 4.9 27 125-151 12-38 (341)
244 2hy5_B Intracellular sulfur ox 38.3 38 0.0013 28.6 4.8 39 108-149 4-43 (136)
245 1srr_A SPO0F, sporulation resp 38.3 1.4E+02 0.0048 23.3 10.2 107 436-556 4-120 (124)
246 2q62_A ARSH; alpha/beta, flavo 38.2 59 0.002 30.5 6.7 41 105-149 31-72 (247)
247 1sqs_A Conserved hypothetical 38.1 32 0.0011 32.1 4.8 39 108-149 1-40 (242)
248 1udb_A Epimerase, UDP-galactos 38.1 27 0.00091 34.2 4.5 25 125-149 7-31 (338)
249 1meo_A Phosophoribosylglycinam 38.0 1.5E+02 0.0052 26.9 9.3 29 223-253 69-97 (209)
250 3f2v_A General stress protein 38.0 17 0.00059 32.9 2.7 37 108-149 1-37 (192)
251 2ark_A Flavodoxin; FMN, struct 38.0 35 0.0012 30.3 4.9 38 107-149 3-41 (188)
252 2ydy_A Methionine adenosyltran 37.7 27 0.00092 33.7 4.4 25 125-149 9-33 (315)
253 1cp2_A CP2, nitrogenase iron p 37.7 26 0.00089 33.0 4.2 36 109-149 1-36 (269)
254 3i6i_A Putative leucoanthocyan 37.5 25 0.00085 34.6 4.2 34 108-151 10-43 (346)
255 3fwz_A Inner membrane protein 37.4 32 0.0011 28.8 4.3 34 108-152 7-40 (140)
256 3lqk_A Dipicolinate synthase s 37.4 28 0.00095 31.7 4.1 35 109-151 8-44 (201)
257 1s8n_A Putative antiterminator 37.3 2.1E+02 0.0072 25.0 13.2 108 436-557 14-131 (205)
258 1ydw_A AX110P-like protein; st 37.3 1.1E+02 0.0038 30.1 9.1 95 406-514 6-102 (362)
259 1qyd_A Pinoresinol-lariciresin 37.1 20 0.00067 34.7 3.2 34 108-151 4-37 (313)
260 3i4f_A 3-oxoacyl-[acyl-carrier 37.0 28 0.00095 32.7 4.3 35 108-151 6-40 (264)
261 3tem_A Ribosyldihydronicotinam 36.9 34 0.0012 31.7 4.7 37 109-149 2-39 (228)
262 3fgn_A Dethiobiotin synthetase 36.9 48 0.0016 31.3 5.8 41 106-150 23-63 (251)
263 2gas_A Isoflavone reductase; N 36.7 18 0.00063 34.7 3.0 34 108-151 2-35 (307)
264 3kb6_A D-lactate dehydrogenase 36.5 90 0.0031 30.7 8.0 43 477-519 188-235 (334)
265 1w25_A Stalked-cell differenti 36.4 3E+02 0.01 27.8 12.6 106 437-556 3-120 (459)
266 3n0r_A Response regulator; sig 36.4 2.8E+02 0.0096 26.2 14.3 117 427-557 151-277 (286)
267 1ny5_A Transcriptional regulat 36.3 2.7E+02 0.0092 27.7 11.9 109 437-556 2-117 (387)
268 4dzz_A Plasmid partitioning pr 36.1 41 0.0014 29.9 5.1 39 109-151 1-39 (206)
269 3mcu_A Dipicolinate synthase, 36.0 29 0.00099 31.8 3.9 35 109-151 6-42 (207)
270 1rkx_A CDP-glucose-4,6-dehydra 36.0 33 0.0011 33.8 4.8 33 109-151 10-42 (357)
271 2v4n_A Multifunctional protein 35.8 31 0.0011 32.6 4.2 40 108-155 1-40 (254)
272 1qyc_A Phenylcoumaran benzylic 35.7 21 0.00072 34.3 3.2 34 108-151 4-37 (308)
273 2z1m_A GDP-D-mannose dehydrata 35.5 32 0.0011 33.5 4.6 27 125-151 10-36 (345)
274 1d4a_A DT-diaphorase, quinone 35.5 41 0.0014 32.1 5.2 38 108-149 2-40 (273)
275 2e6c_A 5'-nucleotidase SURE; S 35.4 31 0.0011 32.4 4.2 39 109-155 1-39 (244)
276 3gd5_A Otcase, ornithine carba 35.0 1.5E+02 0.005 29.1 9.0 105 358-493 128-235 (323)
277 3i42_A Response regulator rece 34.7 1.6E+02 0.0056 23.0 11.5 107 436-556 4-121 (127)
278 3p0r_A Azoreductase; structura 34.6 42 0.0014 30.6 4.9 41 107-149 3-46 (211)
279 2qyt_A 2-dehydropantoate 2-red 34.4 26 0.00088 34.0 3.6 35 105-150 5-45 (317)
280 2gk4_A Conserved hypothetical 34.3 35 0.0012 31.8 4.3 22 129-150 30-51 (232)
281 2hna_A Protein MIOC, flavodoxi 34.3 40 0.0014 28.4 4.5 36 108-148 1-36 (147)
282 4had_A Probable oxidoreductase 34.2 77 0.0026 31.1 7.2 93 405-513 22-116 (350)
283 1y1p_A ARII, aldehyde reductas 33.9 37 0.0013 33.0 4.8 26 125-150 18-43 (342)
284 1j9j_A Stationary phase surviV 33.9 34 0.0012 32.2 4.2 39 109-155 1-39 (247)
285 3rp8_A Flavoprotein monooxygen 33.8 35 0.0012 34.4 4.6 35 104-149 19-53 (407)
286 1vl0_A DTDP-4-dehydrorhamnose 33.7 26 0.0009 33.3 3.5 34 107-150 11-44 (292)
287 4egb_A DTDP-glucose 4,6-dehydr 33.6 30 0.001 33.9 4.1 33 107-149 23-55 (346)
288 1dcf_A ETR1 protein; beta-alph 33.5 1.8E+02 0.0062 23.1 10.2 108 435-556 7-128 (136)
289 1zmt_A Haloalcohol dehalogenas 33.5 20 0.00069 33.6 2.6 34 109-151 1-34 (254)
290 2rh8_A Anthocyanidin reductase 33.4 37 0.0013 33.0 4.7 26 125-150 16-41 (338)
291 4huj_A Uncharacterized protein 33.2 30 0.001 31.7 3.7 31 108-149 23-53 (220)
292 2q1s_A Putative nucleotide sug 33.2 36 0.0012 33.9 4.6 33 108-150 32-65 (377)
293 1xq6_A Unknown protein; struct 33.1 46 0.0016 30.5 5.1 27 125-151 11-39 (253)
294 1kjn_A MTH0777; hypotethical p 32.9 63 0.0022 27.7 5.1 39 107-149 5-43 (157)
295 3e48_A Putative nucleoside-dip 32.6 32 0.0011 32.7 4.0 33 109-151 1-34 (289)
296 3g0o_A 3-hydroxyisobutyrate de 32.6 36 0.0012 33.0 4.3 34 107-151 6-39 (303)
297 2d1p_B TUSC, hypothetical UPF0 32.6 56 0.0019 26.7 4.9 37 110-149 3-39 (119)
298 1n7h_A GDP-D-mannose-4,6-dehyd 32.5 36 0.0012 33.9 4.5 27 125-151 35-61 (381)
299 2vns_A Metalloreductase steap3 32.4 35 0.0012 31.1 4.0 34 107-151 27-60 (215)
300 3dtt_A NADP oxidoreductase; st 32.4 38 0.0013 31.6 4.3 34 107-151 18-51 (245)
301 1l5x_A SurviVal protein E; str 32.3 39 0.0013 32.5 4.3 39 109-155 1-39 (280)
302 3gpi_A NAD-dependent epimerase 32.2 39 0.0013 32.1 4.5 33 108-151 3-35 (286)
303 1p9l_A Dihydrodipicolinate red 32.2 93 0.0032 29.1 6.9 79 437-520 2-82 (245)
304 1e6u_A GDP-fucose synthetase; 32.1 29 0.00099 33.5 3.6 31 109-149 4-34 (321)
305 1ks9_A KPA reductase;, 2-dehyd 32.0 36 0.0012 32.3 4.2 32 109-151 1-32 (291)
306 1z82_A Glycerol-3-phosphate de 31.7 37 0.0013 33.4 4.3 34 107-151 13-46 (335)
307 2r6j_A Eugenol synthase 1; phe 31.7 27 0.00091 33.9 3.2 27 125-151 18-44 (318)
308 3l6e_A Oxidoreductase, short-c 31.7 42 0.0015 30.9 4.5 34 109-151 3-36 (235)
309 3dfz_A SIRC, precorrin-2 dehyd 31.7 37 0.0012 31.5 3.9 34 108-152 31-64 (223)
310 3bfv_A CAPA1, CAPB2, membrane 31.4 57 0.0019 31.0 5.4 41 106-150 79-119 (271)
311 2bll_A Protein YFBG; decarboxy 31.3 40 0.0014 32.9 4.5 27 125-151 7-34 (345)
312 3q9l_A Septum site-determining 31.2 54 0.0019 30.4 5.3 40 108-151 1-40 (260)
313 1gy8_A UDP-galactose 4-epimera 31.2 43 0.0015 33.5 4.8 32 109-150 3-35 (397)
314 1n2s_A DTDP-4-, DTDP-glucose o 31.1 29 0.00098 33.2 3.3 30 109-149 1-30 (299)
315 2ph3_A 3-oxoacyl-[acyl carrier 31.1 36 0.0012 31.3 3.9 25 125-149 8-32 (245)
316 2hpv_A FMN-dependent NADH-azor 31.1 48 0.0017 29.8 4.7 41 108-149 1-43 (208)
317 1t2a_A GDP-mannose 4,6 dehydra 31.1 40 0.0014 33.5 4.5 27 125-151 31-57 (375)
318 3kcq_A Phosphoribosylglycinami 31.1 3E+02 0.01 25.0 10.1 35 107-150 7-43 (215)
319 1lld_A L-lactate dehydrogenase 31.0 43 0.0015 32.5 4.6 35 106-151 5-41 (319)
320 1ek6_A UDP-galactose 4-epimera 30.9 40 0.0014 32.9 4.4 26 125-150 9-34 (348)
321 3sxp_A ADP-L-glycero-D-mannohe 30.9 44 0.0015 33.0 4.7 26 125-150 17-44 (362)
322 1gsa_A Glutathione synthetase; 30.9 41 0.0014 32.2 4.5 40 109-151 2-41 (316)
323 2pv7_A T-protein [includes: ch 30.9 36 0.0012 32.9 4.0 31 109-149 22-52 (298)
324 1yb4_A Tartronic semialdehyde 30.8 20 0.00067 34.5 2.0 32 107-149 2-33 (295)
325 3dm5_A SRP54, signal recogniti 30.8 3.7E+02 0.013 27.5 11.7 78 504-590 263-341 (443)
326 1g3q_A MIND ATPase, cell divis 30.7 59 0.002 29.7 5.4 39 109-151 2-40 (237)
327 3ea0_A ATPase, para family; al 30.7 49 0.0017 30.4 4.8 41 107-151 2-43 (245)
328 2cfc_A 2-(R)-hydroxypropyl-COM 30.5 46 0.0016 30.7 4.6 27 125-151 9-35 (250)
329 2i6u_A Otcase, ornithine carba 30.5 2.1E+02 0.0073 27.7 9.4 105 358-492 119-226 (307)
330 3rft_A Uronate dehydrogenase; 30.4 27 0.00093 32.9 3.0 33 109-150 3-35 (267)
331 3snk_A Response regulator CHEY 30.4 23 0.00077 29.0 2.1 65 484-556 60-132 (135)
332 2a35_A Hypothetical protein PA 30.3 35 0.0012 30.6 3.6 33 108-150 5-39 (215)
333 3fni_A Putative diflavin flavo 30.3 79 0.0027 27.2 5.8 36 109-149 5-40 (159)
334 2r85_A PURP protein PF1517; AT 30.2 37 0.0013 33.0 4.0 32 108-151 2-33 (334)
335 3bbn_B Ribosomal protein S2; s 30.2 1.3E+02 0.0043 28.0 7.3 38 484-522 158-196 (231)
336 1f0y_A HCDH, L-3-hydroxyacyl-C 30.2 47 0.0016 32.1 4.7 34 107-151 14-47 (302)
337 1t0i_A YLR011WP; FMN binding p 30.1 67 0.0023 28.3 5.4 38 109-149 1-44 (191)
338 3m1a_A Putative dehydrogenase; 29.8 50 0.0017 31.2 4.8 34 109-151 5-38 (281)
339 3e9m_A Oxidoreductase, GFO/IDH 29.5 1.8E+02 0.0062 28.2 9.0 92 406-514 5-98 (330)
340 2w37_A Ornithine carbamoyltran 29.5 2E+02 0.0067 28.6 9.0 91 388-492 161-254 (359)
341 2ph1_A Nucleotide-binding prot 29.5 60 0.0021 30.4 5.3 41 105-151 14-56 (262)
342 3r5x_A D-alanine--D-alanine li 29.4 34 0.0012 32.9 3.6 43 107-151 2-44 (307)
343 1iow_A DD-ligase, DDLB, D-ALA\ 29.4 41 0.0014 32.2 4.2 39 108-151 2-43 (306)
344 1zco_A 2-dehydro-3-deoxyphosph 29.3 3.6E+02 0.012 25.3 10.8 100 409-514 25-137 (262)
345 2ahr_A Putative pyrroline carb 29.2 36 0.0012 31.9 3.6 33 107-150 2-34 (259)
346 3a10_A Response regulator; pho 29.2 1.9E+02 0.0065 22.1 12.4 105 437-555 3-115 (116)
347 3u3x_A Oxidoreductase; structu 29.2 1.9E+02 0.0063 28.6 9.1 93 405-514 25-119 (361)
348 3gk3_A Acetoacetyl-COA reducta 29.1 43 0.0015 31.6 4.1 32 109-149 25-56 (269)
349 3hwr_A 2-dehydropantoate 2-red 29.1 43 0.0015 32.7 4.2 32 106-148 17-48 (318)
350 2h78_A Hibadh, 3-hydroxyisobut 29.0 32 0.0011 33.2 3.3 34 107-151 2-35 (302)
351 3i83_A 2-dehydropantoate 2-red 28.9 44 0.0015 32.6 4.2 33 108-151 2-34 (320)
352 2ehd_A Oxidoreductase, oxidore 28.7 49 0.0017 30.2 4.4 27 125-151 12-38 (234)
353 3pef_A 6-phosphogluconate dehy 28.7 54 0.0019 31.3 4.8 32 109-151 2-33 (287)
354 1db3_A GDP-mannose 4,6-dehydra 28.6 45 0.0015 32.9 4.4 26 125-150 8-33 (372)
355 2wm3_A NMRA-like family domain 28.6 47 0.0016 31.7 4.4 27 125-151 12-39 (299)
356 1g0o_A Trihydroxynaphthalene r 28.6 74 0.0025 30.1 5.8 33 110-151 30-62 (283)
357 1hyq_A MIND, cell division inh 28.5 66 0.0023 30.0 5.4 39 109-151 2-40 (263)
358 4ep1_A Otcase, ornithine carba 28.1 2.1E+02 0.0072 28.2 8.9 104 358-492 150-256 (340)
359 1oc2_A DTDP-glucose 4,6-dehydr 28.1 46 0.0016 32.5 4.3 26 125-150 11-38 (348)
360 3dii_A Short-chain dehydrogena 28.0 51 0.0017 30.6 4.4 26 125-150 9-34 (247)
361 3k9g_A PF-32 protein; ssgcid, 27.8 53 0.0018 30.8 4.5 40 105-151 23-64 (267)
362 3kl4_A SRP54, signal recogniti 27.8 76 0.0026 32.6 5.9 45 541-590 295-341 (433)
363 2bn5_B U1 small nuclear ribonu 27.8 22 0.00074 19.7 0.9 18 31-52 5-22 (26)
364 3en0_A Cyanophycinase; serine 27.8 2.1E+02 0.0073 27.4 8.8 110 406-517 27-155 (291)
365 1qo0_D AMIR; binding protein, 27.7 2E+02 0.0067 24.9 8.3 66 483-557 52-125 (196)
366 1xgk_A Nitrogen metabolite rep 27.6 49 0.0017 32.8 4.4 34 108-151 5-38 (352)
367 4e21_A 6-phosphogluconate dehy 27.6 48 0.0016 33.1 4.3 33 108-151 22-54 (358)
368 2oqr_A Sensory transduction pr 27.5 1.1E+02 0.0036 27.6 6.5 108 436-557 5-121 (230)
369 1duv_G Octase-1, ornithine tra 27.4 2.4E+02 0.0083 27.7 9.2 105 358-492 124-233 (333)
370 3zqu_A Probable aromatic acid 27.4 83 0.0028 28.7 5.5 35 108-150 4-39 (209)
371 2raf_A Putative dinucleotide-b 27.4 58 0.002 29.5 4.5 33 107-150 18-50 (209)
372 1wma_A Carbonyl reductase [NAD 27.2 51 0.0018 30.7 4.3 34 109-151 4-38 (276)
373 3f9i_A 3-oxoacyl-[acyl-carrier 27.1 57 0.002 30.1 4.6 27 125-151 21-47 (249)
374 3u7i_A FMN-dependent NADH-azor 27.1 68 0.0023 29.5 5.0 42 107-149 3-48 (223)
375 3k96_A Glycerol-3-phosphate de 27.1 42 0.0014 33.5 3.8 34 107-151 28-61 (356)
376 1uay_A Type II 3-hydroxyacyl-C 27.0 50 0.0017 30.2 4.1 26 125-150 9-34 (242)
377 1ykg_A SIR-FP, sulfite reducta 27.0 48 0.0017 28.7 3.8 37 108-149 9-45 (167)
378 3kjh_A CO dehydrogenase/acetyl 26.9 41 0.0014 31.0 3.5 34 109-150 1-36 (254)
379 2hmt_A YUAA protein; RCK, KTN, 26.9 49 0.0017 27.2 3.7 24 128-151 15-38 (144)
380 3c24_A Putative oxidoreductase 26.8 55 0.0019 31.2 4.5 33 108-150 11-43 (286)
381 3igf_A ALL4481 protein; two-do 26.8 58 0.002 32.8 4.7 36 108-150 1-38 (374)
382 3i42_A Response regulator rece 26.8 2.3E+02 0.0077 22.1 10.2 31 108-148 3-33 (127)
383 2bka_A CC3, TAT-interacting pr 26.6 57 0.0019 29.8 4.4 27 125-151 25-53 (242)
384 1rcu_A Conserved hypothetical 26.5 50 0.0017 29.8 3.8 75 477-554 112-192 (195)
385 4gbj_A 6-phosphogluconate dehy 26.3 32 0.0011 33.4 2.6 29 110-149 7-35 (297)
386 3st7_A Capsular polysaccharide 26.3 41 0.0014 33.4 3.5 31 109-149 1-32 (369)
387 3rkr_A Short chain oxidoreduct 26.2 61 0.0021 30.3 4.6 33 110-151 30-62 (262)
388 1txg_A Glycerol-3-phosphate de 26.0 47 0.0016 32.4 3.9 31 109-150 1-31 (335)
389 3egc_A Putative ribose operon 25.9 3.9E+02 0.013 24.6 15.3 60 410-474 163-224 (291)
390 1fy2_A Aspartyl dipeptidase; s 25.7 1.1E+02 0.0037 28.3 6.1 92 421-517 17-123 (229)
391 3cio_A ETK, tyrosine-protein k 25.7 82 0.0028 30.4 5.5 42 106-151 101-142 (299)
392 3nvt_A 3-deoxy-D-arabino-heptu 25.7 4.1E+02 0.014 26.5 10.8 100 409-514 144-256 (385)
393 1kjq_A GART 2, phosphoribosylg 25.5 77 0.0026 31.6 5.5 35 106-151 9-43 (391)
394 2hun_A 336AA long hypothetical 25.5 55 0.0019 31.7 4.3 33 108-150 3-37 (336)
395 4eg0_A D-alanine--D-alanine li 25.5 47 0.0016 32.3 3.7 41 107-149 12-52 (317)
396 1dhr_A Dihydropteridine reduct 25.5 61 0.0021 29.8 4.4 26 125-150 14-39 (241)
397 3rfo_A Methionyl-tRNA formyltr 25.5 52 0.0018 32.2 4.0 34 106-150 2-35 (317)
398 3cea_A MYO-inositol 2-dehydrog 25.5 2.2E+02 0.0074 27.6 8.8 94 405-514 7-102 (346)
399 3jte_A Response regulator rece 25.4 2.6E+02 0.0089 22.3 10.4 32 108-149 3-34 (143)
400 3eag_A UDP-N-acetylmuramate:L- 25.3 73 0.0025 31.1 5.1 33 107-149 3-35 (326)
401 4iiu_A 3-oxoacyl-[acyl-carrier 25.3 58 0.002 30.5 4.3 33 110-151 27-59 (267)
402 2ekp_A 2-deoxy-D-gluconate 3-d 25.3 64 0.0022 29.7 4.5 27 125-151 9-35 (239)
403 3ehd_A Uncharacterized conserv 25.3 70 0.0024 27.9 4.4 35 479-513 65-103 (162)
404 3g1w_A Sugar ABC transporter; 25.2 4.1E+02 0.014 24.6 19.0 72 409-485 163-234 (305)
405 2ejb_A Probable aromatic acid 25.1 83 0.0028 28.2 5.0 23 128-150 14-36 (189)
406 4dll_A 2-hydroxy-3-oxopropiona 25.0 45 0.0015 32.6 3.5 34 107-151 30-63 (320)
407 1sbz_A Probable aromatic acid 25.0 84 0.0029 28.4 5.0 34 109-150 1-36 (197)
408 3grc_A Sensor protein, kinase; 25.0 2.6E+02 0.0089 22.2 10.4 32 107-148 5-36 (140)
409 1kew_A RMLB;, DTDP-D-glucose 4 25.0 55 0.0019 32.1 4.2 32 109-150 1-33 (361)
410 4dmm_A 3-oxoacyl-[acyl-carrier 24.9 55 0.0019 30.9 4.0 32 110-150 29-60 (269)
411 2rhc_B Actinorhodin polyketide 24.9 70 0.0024 30.3 4.8 33 110-151 23-55 (277)
412 1bg6_A N-(1-D-carboxylethyl)-L 24.9 57 0.0019 32.1 4.3 33 108-151 4-36 (359)
413 2nzw_A Alpha1,3-fucosyltransfe 24.9 87 0.003 31.4 5.5 78 478-569 226-308 (371)
414 2x6t_A ADP-L-glycero-D-manno-h 24.8 54 0.0019 32.2 4.1 33 109-151 47-80 (357)
415 3ghy_A Ketopantoate reductase 24.8 53 0.0018 32.3 4.0 32 108-150 3-34 (335)
416 3l9w_A Glutathione-regulated p 24.7 49 0.0017 33.8 3.8 35 107-152 3-37 (413)
417 3nrc_A Enoyl-[acyl-carrier-pro 24.7 49 0.0017 31.4 3.7 35 110-151 27-61 (280)
418 3rys_A Adenosine deaminase 1; 24.6 3E+02 0.01 27.0 9.5 142 422-592 180-334 (343)
419 2pgf_A Adenosine deaminase; me 24.6 2E+02 0.0069 28.6 8.4 147 417-589 210-369 (371)
420 3lcm_A SMU.1420, putative oxid 24.5 64 0.0022 28.9 4.2 36 109-149 1-37 (196)
421 1u7z_A Coenzyme A biosynthesis 24.5 63 0.0022 29.9 4.2 23 124-149 33-55 (226)
422 3l6d_A Putative oxidoreductase 24.4 61 0.0021 31.4 4.3 33 107-150 8-40 (306)
423 4egs_A Ribose 5-phosphate isom 24.3 76 0.0026 28.2 4.5 42 102-149 28-70 (180)
424 1js1_X Transcarbamylase; alpha 24.3 78 0.0027 31.1 5.0 41 108-152 166-206 (324)
425 1geg_A Acetoin reductase; SDR 24.3 67 0.0023 29.9 4.5 26 125-150 9-34 (256)
426 2fb6_A Conserved hypothetical 24.3 60 0.002 26.5 3.6 37 109-149 8-46 (117)
427 1r6d_A TDP-glucose-4,6-dehydra 24.2 65 0.0022 31.2 4.5 32 109-150 1-38 (337)
428 3dfu_A Uncharacterized protein 24.2 23 0.00078 33.1 1.0 33 107-150 5-37 (232)
429 4e3z_A Putative oxidoreductase 24.2 59 0.002 30.6 4.1 33 109-150 26-58 (272)
430 3uuw_A Putative oxidoreductase 24.0 1.1E+02 0.0036 29.5 6.0 68 434-514 30-97 (308)
431 2c29_D Dihydroflavonol 4-reduc 24.0 59 0.002 31.5 4.2 26 125-150 12-37 (337)
432 1ja9_A 4HNR, 1,3,6,8-tetrahydr 23.9 70 0.0024 29.9 4.6 26 125-150 28-53 (274)
433 3g17_A Similar to 2-dehydropan 23.8 42 0.0014 32.3 3.0 33 108-151 2-34 (294)
434 1sny_A Sniffer CG10964-PA; alp 23.8 58 0.002 30.4 4.0 35 108-151 20-57 (267)
435 1xhl_A Short-chain dehydrogena 23.8 59 0.002 31.2 4.0 33 110-151 27-59 (297)
436 1oth_A Protein (ornithine tran 23.7 2.2E+02 0.0076 27.7 8.1 122 322-489 100-229 (321)
437 3p19_A BFPVVD8, putative blue 23.7 68 0.0023 30.2 4.4 34 109-151 16-49 (266)
438 3cwq_A Para family chromosome 23.7 64 0.0022 29.1 4.1 23 126-149 13-35 (209)
439 2x5n_A SPRPN10, 26S proteasome 23.7 2.9E+02 0.01 24.4 8.5 59 408-469 110-168 (192)
440 3r3s_A Oxidoreductase; structu 23.7 1.5E+02 0.0052 28.1 7.0 33 109-150 49-81 (294)
441 1cyd_A Carbonyl reductase; sho 23.7 78 0.0027 28.9 4.8 27 125-151 14-40 (244)
442 5nul_A Flavodoxin; electron tr 23.6 67 0.0023 26.5 3.9 27 123-149 8-34 (138)
443 2yy7_A L-threonine dehydrogena 23.6 46 0.0016 31.8 3.2 26 125-150 9-36 (312)
444 3ay3_A NAD-dependent epimerase 23.5 25 0.00084 33.1 1.2 26 125-150 9-34 (267)
445 2wqk_A 5'-nucleotidase SURE; S 23.5 66 0.0023 30.3 4.2 39 109-155 2-40 (251)
446 3qsg_A NAD-binding phosphogluc 23.5 56 0.0019 31.8 3.8 33 107-150 23-56 (312)
447 2p4h_X Vestitone reductase; NA 23.4 69 0.0023 30.7 4.5 26 125-150 8-33 (322)
448 3hv2_A Response regulator/HD d 23.3 3E+02 0.01 22.4 9.9 33 106-148 12-44 (153)
449 2p2s_A Putative oxidoreductase 23.3 2E+02 0.0069 27.8 8.0 92 406-514 4-97 (336)
450 3t7c_A Carveol dehydrogenase; 23.2 82 0.0028 30.2 5.0 33 109-150 28-60 (299)
451 1ooe_A Dihydropteridine reduct 23.2 70 0.0024 29.3 4.3 26 125-150 10-35 (236)
452 4fb5_A Probable oxidoreductase 23.1 1.3E+02 0.0044 29.8 6.6 95 404-513 23-124 (393)
453 1yb1_A 17-beta-hydroxysteroid 23.1 90 0.0031 29.3 5.2 27 125-151 38-64 (272)
454 3hn2_A 2-dehydropantoate 2-red 23.1 62 0.0021 31.4 4.1 33 108-151 2-34 (312)
455 3qiv_A Short-chain dehydrogena 23.0 72 0.0025 29.5 4.4 34 109-151 9-42 (253)
456 4hkt_A Inositol 2-dehydrogenas 23.0 1.7E+02 0.0057 28.4 7.3 75 424-514 18-94 (331)
457 3gbv_A Putative LACI-family tr 23.0 4.5E+02 0.015 24.2 20.7 73 407-486 174-246 (304)
458 3cky_A 2-hydroxymethyl glutara 22.9 48 0.0017 31.8 3.2 33 107-150 3-35 (301)
459 3pid_A UDP-glucose 6-dehydroge 22.9 62 0.0021 33.3 4.1 38 102-151 30-67 (432)
460 2nm0_A Probable 3-oxacyl-(acyl 22.7 78 0.0027 29.5 4.6 33 109-150 21-53 (253)
461 3tml_A 2-dehydro-3-deoxyphosph 22.7 5.1E+02 0.017 24.7 10.3 105 405-514 15-138 (288)
462 1i36_A Conserved hypothetical 22.6 64 0.0022 30.2 4.0 30 109-149 1-30 (264)
463 3pdu_A 3-hydroxyisobutyrate de 22.6 46 0.0016 31.8 3.0 34 108-152 1-34 (287)
464 3sju_A Keto reductase; short-c 22.6 75 0.0026 30.1 4.5 34 109-151 24-57 (279)
465 3svl_A Protein YIEF; E. coli C 22.6 27 0.00092 31.5 1.2 38 107-148 3-41 (193)
466 1smk_A Malate dehydrogenase, g 22.5 48 0.0017 32.6 3.1 35 105-149 5-41 (326)
467 1o5i_A 3-oxoacyl-(acyl carrier 22.5 88 0.003 28.9 4.9 26 125-150 26-51 (249)
468 3mst_A Putative nitrate transp 22.4 2.1E+02 0.0071 26.4 6.9 55 533-590 158-212 (244)
469 2wsb_A Galactitol dehydrogenas 22.4 77 0.0026 29.2 4.5 27 125-151 18-44 (254)
470 1fmt_A Methionyl-tRNA FMet for 22.3 4.8E+02 0.017 25.1 10.4 95 406-508 3-106 (314)
471 3i1j_A Oxidoreductase, short c 22.3 74 0.0025 29.2 4.3 34 109-151 14-47 (247)
472 2l2q_A PTS system, cellobiose- 22.3 1.1E+02 0.0038 24.4 4.8 42 108-155 4-45 (109)
473 3ohs_X Trans-1,2-dihydrobenzen 22.3 1.2E+02 0.0041 29.5 6.1 79 424-514 17-97 (334)
474 2khz_A C-MYC-responsive protei 22.3 2.1E+02 0.0071 24.7 7.0 74 478-558 72-152 (165)
475 3h7a_A Short chain dehydrogena 22.3 89 0.003 29.0 4.9 34 109-151 7-40 (252)
476 3end_A Light-independent proto 22.2 98 0.0033 29.7 5.3 40 106-150 38-77 (307)
477 1p9o_A Phosphopantothenoylcyst 22.2 76 0.0026 31.0 4.4 23 128-150 65-87 (313)
478 3moi_A Probable dehydrogenase; 22.1 1.7E+02 0.0058 29.1 7.3 68 434-514 26-95 (387)
479 3ego_A Probable 2-dehydropanto 22.1 71 0.0024 30.9 4.3 32 108-151 2-33 (307)
480 2woo_A ATPase GET3; tail-ancho 22.1 71 0.0024 31.3 4.3 37 108-151 18-56 (329)
481 1pzg_A LDH, lactate dehydrogen 22.0 84 0.0029 30.9 4.8 35 106-151 7-42 (331)
482 3un1_A Probable oxidoreductase 22.0 73 0.0025 29.8 4.2 33 109-150 28-60 (260)
483 4ds3_A Phosphoribosylglycinami 21.9 4.4E+02 0.015 23.7 10.1 96 108-253 7-104 (209)
484 3la6_A Tyrosine-protein kinase 21.8 1.1E+02 0.0036 29.4 5.4 42 106-151 89-130 (286)
485 1dxh_A Ornithine carbamoyltran 21.8 2E+02 0.0068 28.3 7.4 105 358-492 125-233 (335)
486 3ju3_A Probable 2-oxoacid ferr 21.8 2.1E+02 0.0071 23.1 6.5 68 469-556 50-117 (118)
487 3awd_A GOX2181, putative polyo 21.7 80 0.0027 29.2 4.5 27 125-151 20-46 (260)
488 2xj4_A MIPZ; replication, cell 21.7 96 0.0033 29.5 5.1 40 108-151 3-42 (286)
489 2f1k_A Prephenate dehydrogenas 21.6 74 0.0025 30.0 4.2 32 109-151 1-32 (279)
490 1y7t_A Malate dehydrogenase; N 21.6 67 0.0023 31.4 4.0 33 107-149 3-42 (327)
491 2y0c_A BCEC, UDP-glucose dehyd 21.5 73 0.0025 33.2 4.4 33 107-150 7-39 (478)
492 2gk3_A Putative cytoplasmic pr 21.5 75 0.0026 29.9 4.2 45 102-150 4-61 (256)
493 1yqg_A Pyrroline-5-carboxylate 21.5 67 0.0023 30.0 3.9 32 109-151 1-33 (263)
494 2woj_A ATPase GET3; tail-ancho 21.5 71 0.0024 31.7 4.2 39 107-152 16-58 (354)
495 1fmt_A Methionyl-tRNA FMet for 21.4 90 0.0031 30.5 4.8 33 107-150 2-34 (314)
496 2pd6_A Estradiol 17-beta-dehyd 21.4 93 0.0032 28.8 4.9 27 125-151 14-40 (264)
497 3ph3_A Ribose-5-phosphate isom 21.3 1E+02 0.0036 27.0 4.6 41 102-150 14-54 (169)
498 3dzd_A Transcriptional regulat 21.2 2.9E+02 0.01 27.3 8.8 100 450-558 13-119 (368)
499 3itj_A Thioredoxin reductase 1 21.2 72 0.0025 30.7 4.2 34 106-150 20-53 (338)
500 3csu_A Protein (aspartate carb 21.1 1.5E+02 0.0051 28.8 6.3 109 358-494 124-232 (310)
No 1
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=4.3e-64 Score=549.44 Aligned_cols=472 Identities=27% Similarity=0.454 Sum_probs=385.5
Q ss_pred cCCCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEE
Q 043397 104 KDSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAY 183 (596)
Q Consensus 104 ~~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (596)
+....|||||+++|++|+.++||+++++..|+++|+++||+|.|++|.|+.... .........+...+......++
T Consensus 5 ~~~~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 80 (536)
T 3vue_A 5 HHHHHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKD----AWDTSVVAEIKVADRYERVRFF 80 (536)
T ss_dssp ---CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCSCCTT----CEEEEEEEEEEETTEEEEEEEE
T ss_pred cCCCCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecCchhhhh----hcccceEEEEEecCceEEEEEE
Confidence 345679999999999999999999999999999999999999999999987643 2233444566777777888899
Q ss_pred eeeeCCeEEEEEcCCccccCC------CcccCCC-----hhhHHHHHHHHHHHHHHHHhhC-----------CCCcEEEE
Q 043397 184 HGVVSSIPVIFIEPSNQFFKG------KNVYGGS-----YNELEAYLFFSRACLEWMQVTG-----------VQPDIIHV 241 (596)
Q Consensus 184 ~~~~~gv~v~~~~~~~~~~~~------~~~y~~~-----~~~~~~~~~f~~~~~~~l~~~~-----------~~pDVIh~ 241 (596)
....+|+++|+++.+ .++.+ ..+|+.. .++.++|.+|+++++++++... ..+||||+
T Consensus 81 ~~~~~gv~~y~id~~-~~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~~~~~ddIiH~ 159 (536)
T 3vue_A 81 HCYKRGVDRVFIDHP-SFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVC 159 (536)
T ss_dssp ECEETTEEEEEEECT-TTTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCSCCCSCEEEEE
T ss_pred EEEECCceEEEecCh-hhhccccccCCCcccCCCccCccchHHHHHHHHHHHHHHHHHHhccccchhhhccCCCCEEEEE
Confidence 999999999999853 34432 4567642 2788999999999999877532 34678899
Q ss_pred cCCccchHHHHHHHHhhhcc-CCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchh
Q 043397 242 HEWQIGALPLLYWDMYQSLS-LKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGG 320 (596)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~-~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (596)
|+|+++++|.+++..+.... ..++|+|+|+||+.+++.+....+...++....+...+... ......+...+++++.+
T Consensus 160 hDW~t~l~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~n~~k~~ 238 (536)
T 3vue_A 160 NDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFID-GYDTPVEGRKINWMKAG 238 (536)
T ss_dssp ESGGGSTHHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEE-TTTSTTCEEEEEHHHHH
T ss_pred CcchHHHHHHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhh-cccccccccchhHHHHH
Confidence 99999999999887665443 56899999999999999988887777777766554332211 11111234577899999
Q ss_pred ccccCeEEEeChhhHHHHhhc-ch-hhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCC-chhhhhhHHHHHhh
Q 043397 321 IVYSNAVVTVSPTYLKETLCS-GW-LASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQK-PEGKKICKYYIQKG 397 (596)
Q Consensus 321 ~~~ad~vi~vS~~~~~~~~~~-g~-l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~-~~~k~~~k~~~~~~ 397 (596)
+.+||.|+|||+++++++... +. +......+..++.+|+||||++.|+|.+|..++..|.... .+.|..+|..+++.
T Consensus 239 i~~ad~v~tVS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~ 318 (536)
T 3vue_A 239 ILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAE 318 (536)
T ss_dssp HHHCSEEEESCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHH
T ss_pred HHhccEEEEcCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHHHHh
Confidence 999999999999999998642 10 1111223467899999999999999999999999888766 57899999999999
Q ss_pred cCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHH
Q 043397 398 LGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELS 477 (596)
Q Consensus 398 l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l 477 (596)
+|++.+++.|+|+|+||+.++||++.|++|+.++.+++.+|+|+|. +++.....++..+..+ ..++.+.+.++++++
T Consensus 319 ~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~-G~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~ 395 (536)
T 3vue_A 319 AGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGT-GKKKFEKLLKSMEEKY--PGKVRAVVKFNAPLA 395 (536)
T ss_dssp TTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECC-BCHHHHHHHHHHHHHS--TTTEEEECSCCHHHH
T ss_pred cCCCCCCCCcEEEEEeeccccCChHHHHHHHHHhHhhCCeEEEEec-cCchHHHHHHHHHhhc--CCceEEEEeccHHHH
Confidence 9999888999999999999999999999999999888899999998 3344455566666555 457999999999999
Q ss_pred HHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceE----------EEeCCCHHHH
Q 043397 478 HMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGF----------VFEGIDEGSL 547 (596)
Q Consensus 478 ~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~----------lv~~~d~~~l 547 (596)
..+|++||++|+||++|+||++++|||+||+|||++++||++|+|.| +.||+ ++++.|+++|
T Consensus 396 ~~~~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~gG~~e~V~d--------g~~G~~~~~~~~~g~l~~~~d~~~l 467 (536)
T 3vue_A 396 HLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIE--------GKTGFHMGRLSVDCKVVEPSDVKKV 467 (536)
T ss_dssp HHHHHHCSEEEECCSCCSSCSHHHHHHHTTCCEEECSCTHHHHHCCB--------TTTEEECCCCCSCTTCCCHHHHHHH
T ss_pred HHHHHhhheeecccccCCCCHHHHHHHHcCCCEEEcCCCCchheeeC--------CCCccccccCCCceeEECCCCHHHH
Confidence 99999999999999999999999999999999999999999999999 67777 7788899999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 043397 548 NWALDRAFRHFIDKPEEWNRIVQKIMENDNSWNNAAGKYMEIYNSIR 594 (596)
Q Consensus 548 a~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~iy~~l~ 594 (596)
+++|.++++.+. + +.|++|++++++++|||++++++|+++|+++.
T Consensus 468 a~ai~ral~~~~-~-~~~~~~~~~am~~~fSW~~~A~~y~~ly~~L~ 512 (536)
T 3vue_A 468 AATLKRAIKVVG-T-PAYEEMVRNCMNQDLSWKGPAKNWENVLLGLG 512 (536)
T ss_dssp HHHHHHHHHHTT-S-HHHHHHHHHHHHSCCSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcC-c-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 999999998773 4 46889999999999999999999999999874
No 2
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=2e-49 Score=430.92 Aligned_cols=453 Identities=29% Similarity=0.537 Sum_probs=338.8
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeC
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVS 188 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (596)
|||++++..++|....||+++++.+|+++|.++||+|+|+++.+...... .........+.++.+. ...+......
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~ 76 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAA-VTDPVKCFEFTDLLGE---KADLLEVQHE 76 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHH-CCSCEEEEEESCSSSC---CEEEEEEEET
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHHcCCeEEEEeccccccccc-ccccceeEEEEEecCC---eEEEEEEEec
Confidence 89999999998864579999999999999999999999999865433211 1111111111111111 1122233458
Q ss_pred CeEEEEEcCCccccCCC-cccCC----Ch-hhHHHHHHHHHHHHHHHHhh--CCCCcEEEEcCCccchHHHHHHHHhhhc
Q 043397 189 SIPVIFIEPSNQFFKGK-NVYGG----SY-NELEAYLFFSRACLEWMQVT--GVQPDIIHVHEWQIGALPLLYWDMYQSL 260 (596)
Q Consensus 189 gv~v~~~~~~~~~~~~~-~~y~~----~~-~~~~~~~~f~~~~~~~l~~~--~~~pDVIh~~~~~~~~~~~~~~~~~~~~ 260 (596)
|++++.++.. .++.+. .+|+. .+ ....++..|...+.++++.. ..+|||||+|++..+.++.++...
T Consensus 77 gv~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiIh~~~~~~~~~~~~~~~~---- 151 (485)
T 1rzu_A 77 RLDLLILDAP-AYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAAMTPVYMRYA---- 151 (485)
T ss_dssp TEEEEEEECH-HHHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHHHHTTHHHHHHHS----
T ss_pred CceEEEEeCh-HHhCCCccccCCcccccccchHHHHHHHHHHHHHHHHHhccCCCCCEEEecccchhHHHHHHhhc----
Confidence 9999988732 222111 13321 11 33445666777777777654 578999999987776666654431
Q ss_pred cCCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhh
Q 043397 261 SLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLC 340 (596)
Q Consensus 261 ~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~ 340 (596)
...++|+|+|+|+..+.+.+....+...++....+...... ......+++..++.+|.|+++|+..++.+..
T Consensus 152 ~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~ 223 (485)
T 1rzu_A 152 ETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIE--------YYNDVSFLKGGLQTATALSTVSPSYAEEILT 223 (485)
T ss_dssp SSCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTE--------ETTEEEHHHHHHHHCSEEEESCHHHHHHTTS
T ss_pred ccCCCCEEEEecCccccCCCCHHHHhhcCCChhhccccccc--------ccccccHHHHHHhhcCEEEecCHhHHHHHhc
Confidence 12589999999998765555443333334443322110000 0012345677788999999999999998754
Q ss_pred c--ch-hhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCC-ccEEEEEeccc
Q 043397 341 S--GW-LASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGT-VPLVVCITRLV 416 (596)
Q Consensus 341 ~--g~-l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~-~~~il~iGrl~ 416 (596)
. |+ +...+..+..++.+||||+|.+.|.|..+..++..|......++..++..++++++++ ++ .++|+|+||+.
T Consensus 224 ~~~g~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~i~~vGrl~ 301 (485)
T 1rzu_A 224 AEFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRID--DDGSPLFCVISRLT 301 (485)
T ss_dssp HHHHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTCC--CSSSCEEEEESCBS
T ss_pred cccCcchHHHHHhhcCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhcCCC--CCCCeEEEEEccCc
Confidence 2 21 1112234567999999999999998887776777777777778888888999999996 33 67999999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCEEEEEecCCCCc--chHHHHHHHHHcCCCCcEE-EEeccCHHHHHHHHHhCCEEEEcCCC
Q 043397 417 AQKGLHLITHAIKRAEELGGQMILLGNSPVHW--VQKDFEDLANLHNKGTSTR-ILLMYSEELSHMLYAAADIVLVPSIY 493 (596)
Q Consensus 417 ~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~--~~~~l~~~~~~~~~~~~V~-~~g~~~~~~l~~~~a~aDi~l~PS~~ 493 (596)
++||++.+++|++.+.+++++|+|+|+ |+ +.+.+++++++++ ++|+ |.|. +++++..+|++||++|+||.+
T Consensus 302 ~~Kg~~~li~a~~~l~~~~~~l~ivG~---g~~~~~~~l~~~~~~~~--~~v~~~~g~-~~~~~~~~~~~adv~v~pS~~ 375 (485)
T 1rzu_A 302 WQKGIDLMAEAVDEIVSLGGRLVVLGA---GDVALEGALLAAASRHH--GRVGVAIGY-NEPLSHLMQAGCDAIIIPSRF 375 (485)
T ss_dssp TTTTHHHHHTTHHHHHHTTCEEEEEEC---BCHHHHHHHHHHHHHTT--TTEEEEESC-CHHHHHHHHHHCSEEEECCSC
T ss_pred cccCHHHHHHHHHHHHhcCceEEEEeC---CchHHHHHHHHHHHhCC--CcEEEecCC-CHHHHHHHHhcCCEEEECccc
Confidence 999999999999999878999999999 64 5788999998875 5787 5676 888889999999999999999
Q ss_pred CCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCc---------cceEEEeCCCHHHHHHHHHHHHHhccCCHHH
Q 043397 494 EPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEK---------ANGFVFEGIDEGSLNWALDRAFRHFIDKPEE 564 (596)
Q Consensus 494 E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~---------~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~ 564 (596)
|+||++++|||+||+|||++++||++|++.+ + .+|+++++.|+++|+++|.++++++. |++.
T Consensus 376 E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~--------~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~-~~~~ 446 (485)
T 1rzu_A 376 EPCGLTQLYALRYGCIPVVARTGGLADTVID--------ANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYH-DPKL 446 (485)
T ss_dssp CSSCSHHHHHHHHTCEEEEESSHHHHHHCCB--------CCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHHHHT-CHHH
T ss_pred CCCCHHHHHHHHCCCCEEEeCCCChhheecc--------cccccccccCCcceEeCCCCHHHHHHHHHHHHHHhC-CHHH
Confidence 9999999999999999999999999999988 5 79999999999999999999994321 8999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 043397 565 WNRIVQKIMENDNSWNNAAGKYMEIYNSIRV 595 (596)
Q Consensus 565 ~~~~~~~~~~~~fs~~~~~~~~~~iy~~l~~ 595 (596)
+++|++++.+++|||+.++++|+++|++++.
T Consensus 447 ~~~~~~~~~~~~fs~~~~~~~~~~~y~~~~~ 477 (485)
T 1rzu_A 447 WTQMQKLGMKSDVSWEKSAGLYAALYSQLIS 477 (485)
T ss_dssp HHHHHHHHHTCCCBHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHhhC
Confidence 9999999888899999999999999999874
No 3
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=8.3e-49 Score=426.11 Aligned_cols=453 Identities=31% Similarity=0.570 Sum_probs=334.6
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeC
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVS 188 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (596)
|||++++..++|....||+++++.+|+++|+++||+|+|+|+.+...... .........+. ..++ ...+.....+
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~-~~~~~~~~~~~-~~~~---~~~~~~~~~~ 75 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRG-VTDAQVVSRRD-TFAG---HITLLFGHYN 75 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTTCEEEEEEECCHHHHHH-CTTCEEEEEEC-CTTC---CEEEEEEEET
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHHcCCEEEEEecCccccccc-cccceeEEEec-ccCC---cEEEEEEEEC
Confidence 89999999998864579999999999999999999999999865432211 00000000000 0000 0112223358
Q ss_pred CeEEEEEcCCccccCCCc-ccCC----Ch-hhHHHHHHHHHHHHHHHHhhC--CCCcEEEEcCCccchHHHHHHHHhhhc
Q 043397 189 SIPVIFIEPSNQFFKGKN-VYGG----SY-NELEAYLFFSRACLEWMQVTG--VQPDIIHVHEWQIGALPLLYWDMYQSL 260 (596)
Q Consensus 189 gv~v~~~~~~~~~~~~~~-~y~~----~~-~~~~~~~~f~~~~~~~l~~~~--~~pDVIh~~~~~~~~~~~~~~~~~~~~ 260 (596)
|+++++++.. .++.+.. .|.. .+ ....++..+...+.++++... .+|||||+|++..+.++.++..
T Consensus 76 gv~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~~~~~~~----- 149 (485)
T 2qzs_A 76 GVGIYLIDAP-HLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAA----- 149 (485)
T ss_dssp TEEEEEEECH-HHHCCSSCSSBCTTSCBCTTHHHHHHHHHHHHHHHTTTSSTTCCCSEEEEETGGGTTHHHHHHH-----
T ss_pred CcEEEEEeCh-hhccCCCCccCCcccCCCCchHHHHHHHHHHHHHHHHHhccCCCCCEEEeeccchhHHHHHHhh-----
Confidence 9999988732 1122111 2321 11 233445556666666665433 6899999999887766665431
Q ss_pred cCCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhh
Q 043397 261 SLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLC 340 (596)
Q Consensus 261 ~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~ 340 (596)
+..++|+|+|+|+..+.+.+....+...++....+...... ......+++..++.+|.|+++|+..++.+..
T Consensus 150 ~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~ 221 (485)
T 2qzs_A 150 RGRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLE--------FNGQISFLKAGLYYADHITAVSPTYAREITE 221 (485)
T ss_dssp TTCSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTE--------ETTEEEHHHHHHHHCSEEEESSHHHHHHTTS
T ss_pred ccCCCCEEEEecCccccCCCCHHHHHhcCCCchhccccccc--------ccccccHHHHHHHhcCeEEecCHHHHHHHhc
Confidence 14689999999998765554433333333333222110000 0112345677788899999999999988754
Q ss_pred c--ch-hhhhhhccC--CcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecc
Q 043397 341 S--GW-LASVLITHR--DKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRL 415 (596)
Q Consensus 341 ~--g~-l~~~~~~~~--~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl 415 (596)
. |+ +...+..+. .++.+||||+|.+.|.|..+..++..|+.....++..++..++++++++.+++.++|+|+||+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~vGrl 301 (485)
T 2qzs_A 222 PQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSRL 301 (485)
T ss_dssp HHHHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHHHTCCCCTTSCEEEEEEEE
T ss_pred cccCcchHHHHHhhccCCceEEEecCCCccccCccccccccccccccchhHHHHhHHHHHHHcCCCCCCCCeEEEEeccC
Confidence 2 21 001111123 789999999999999888777777778877777888888999999999633378999999999
Q ss_pred cccCCHHHHHHHHHHHHHcCCEEEEEecCCCCc--chHHHHHHHHHcCCCCcEE-EEeccCHHHHHHHHHhCCEEEEcCC
Q 043397 416 VAQKGLHLITHAIKRAEELGGQMILLGNSPVHW--VQKDFEDLANLHNKGTSTR-ILLMYSEELSHMLYAAADIVLVPSI 492 (596)
Q Consensus 416 ~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~--~~~~l~~~~~~~~~~~~V~-~~g~~~~~~l~~~~a~aDi~l~PS~ 492 (596)
.++||++.+++|++.+.+++++|+|+|+ |+ +.+.+++++++++ ++|+ |.|. +++++..+|++||++|+||.
T Consensus 302 ~~~Kg~~~li~a~~~l~~~~~~l~ivG~---g~~~~~~~l~~~~~~~~--~~v~~~~g~-~~~~~~~~~~~adv~v~pS~ 375 (485)
T 2qzs_A 302 TSQKGLDLVLEALPGLLEQGGQLALLGA---GDPVLQEGFLAAAAEYP--GQVGVQIGY-HEAFSHRIMGGADVILVPSR 375 (485)
T ss_dssp SGGGCHHHHHHHHHHHHHTTCEEEEEEE---ECHHHHHHHHHHHHHST--TTEEEEESC-CHHHHHHHHHHCSEEEECCS
T ss_pred ccccCHHHHHHHHHHHhhCCcEEEEEeC---CchHHHHHHHHHHHhCC--CcEEEeCCC-CHHHHHHHHHhCCEEEECCc
Confidence 9999999999999999877999999999 64 6788999998875 5787 6677 88888999999999999999
Q ss_pred CCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCc---------cceEEEeCCCHHHHHHHHHHHHHhccCCHH
Q 043397 493 YEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEK---------ANGFVFEGIDEGSLNWALDRAFRHFIDKPE 563 (596)
Q Consensus 493 ~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~---------~~G~lv~~~d~~~la~~i~~ll~~~~~~~~ 563 (596)
+|+||++++|||+||+|||++++||++|++.+ + .+|+++++.|+++|+++|.++++++. |++
T Consensus 376 ~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~--------~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~-~~~ 446 (485)
T 2qzs_A 376 FEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD--------CSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWS-RPS 446 (485)
T ss_dssp CCSSCSHHHHHHHHTCEEEEESSHHHHHHCCB--------CCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHHHHT-SHH
T ss_pred cCCCcHHHHHHHHCCCCEEECCCCCccceecc--------CccccccccccceEEECCCCHHHHHHHHHHHHHHcC-CHH
Confidence 99999999999999999999999999999988 5 79999999999999999999994321 899
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 043397 564 EWNRIVQKIMENDNSWNNAAGKYMEIYNSIRV 595 (596)
Q Consensus 564 ~~~~~~~~~~~~~fs~~~~~~~~~~iy~~l~~ 595 (596)
.+.+|++++.+++|||+.++++|+++|++++.
T Consensus 447 ~~~~~~~~~~~~~fs~~~~~~~~~~ly~~~~~ 478 (485)
T 2qzs_A 447 LWRFVQRQAMAMDFSWQVAAKSYRELYYRLKL 478 (485)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHhhh
Confidence 99999998888899999999999999998853
No 4
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=1.9e-48 Score=416.50 Aligned_cols=419 Identities=24% Similarity=0.353 Sum_probs=331.4
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeee
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGV 186 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (596)
++|||++++.+++| ...||.++++.+|+++|+++||+|+|+++.+....... ...+.+ -+......++...
T Consensus 1 r~MkIl~v~~~~~p-~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~ 71 (439)
T 3fro_A 1 RHMKVLLLGFEFLP-VKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEE------IGKIRV--FGEEVQVKVSYEE 71 (439)
T ss_dssp CCCEEEEECSCCTT-SCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTCSCCEE------EEEEEE--TTEEEEEEEEEEE
T ss_pred CceEEEEEecccCC-cccCCHHHHHHHHHHHHHHCCCeEEEEecCCCCchhhh------hccccc--cCcccceeeeecc
Confidence 47999999999988 46799999999999999999999999998766543322 112222 1233455556667
Q ss_pred eCCeEEEEEcCCccccCCCcccCCChhh-HHHHHHHHHHHHHHHHhh---CCCCcEEEEcCCccchHHHHHHHHhhhccC
Q 043397 187 VSSIPVIFIEPSNQFFKGKNVYGGSYNE-LEAYLFFSRACLEWMQVT---GVQPDIIHVHEWQIGALPLLYWDMYQSLSL 262 (596)
Q Consensus 187 ~~gv~v~~~~~~~~~~~~~~~y~~~~~~-~~~~~~f~~~~~~~l~~~---~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~ 262 (596)
.+|++++.++. .++.+..+|....++ ..++..|.+.+..+++.. ..+|||||+|++..++++.++...
T Consensus 72 ~~gv~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~------ 143 (439)
T 3fro_A 72 RGNLRIYRIGG--GLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTVFAGALIKKY------ 143 (439)
T ss_dssp ETTEEEEEEES--GGGGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGGHHHHHHHHHH------
T ss_pred CCCceEEEecc--hhccccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchhhhhhHHHHhhc------
Confidence 89999999985 555666666644455 677778888888888866 679999999998877777665432
Q ss_pred CCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcc
Q 043397 263 KKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSG 342 (596)
Q Consensus 263 ~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g 342 (596)
.++|+|+++|+......... .+....+... .......+.+..++.+|.|+++|+.+++..
T Consensus 144 ~~~~~v~~~h~~~~~~~~~~-~~~~~~~~~~---------------~~~~~~~~~~~~~~~ad~ii~~S~~~~~~~---- 203 (439)
T 3fro_A 144 FKIPAVFTIHRLNKSKLPAF-YFHEAGLSEL---------------APYPDIDPEHTGGYIADIVTTVSRGYLIDE---- 203 (439)
T ss_dssp HCCCEEEEESCCCCCCEEHH-HHHHTTCGGG---------------CCSSEECHHHHHHHHCSEEEESCHHHHHHT----
T ss_pred cCCCEEEEecccccccCchH-HhCccccccc---------------cccceeeHhhhhhhhccEEEecCHHHHHHH----
Confidence 58999999999875322111 1111011000 011333567778889999999999888873
Q ss_pred hhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEeccc-ccCCH
Q 043397 343 WLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLV-AQKGL 421 (596)
Q Consensus 343 ~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~-~~KGi 421 (596)
...+..+..++.+||||+|.+.|.|...+ ..+...+..++++++++ ++ ++|+|+||+. ++||+
T Consensus 204 --~~~~~~~~~~i~vi~ngvd~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~--~~-~~i~~~G~~~~~~Kg~ 267 (439)
T 3fro_A 204 --WGFFRNFEGKITYVFNGIDCSFWNESYLT-----------GSRDERKKSLLSKFGMD--EG-VTFMFIGRFDRGQKGV 267 (439)
T ss_dssp --HHHHGGGTTSEEECCCCCCTTTSCGGGSC-----------SCHHHHHHHHHHHHTCC--SC-EEEEEECCSSCTTBCH
T ss_pred --hhhhhhcCCceeecCCCCCchhcCccccc-----------chhhhhHHHHHHHcCCC--CC-cEEEEEcccccccccH
Confidence 22344568899999999999988765211 12445678889999995 45 9999999999 99999
Q ss_pred HHHHHHHHHHHH----cCCEEEEEecCCCCcch--HHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCC
Q 043397 422 HLITHAIKRAEE----LGGQMILLGNSPVHWVQ--KDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEP 495 (596)
Q Consensus 422 ~~ll~A~~~l~~----~~~~lvIvG~~~~g~~~--~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~ 495 (596)
+.+++|++++.+ ++++|+|+|+ |+.. +.+++++++++ +.+.|.|+++.+++..+|++||++|+||.+|+
T Consensus 268 ~~li~a~~~l~~~~~~~~~~l~i~G~---g~~~~~~~l~~~~~~~~--~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e~ 342 (439)
T 3fro_A 268 DVLLKAIEILSSKKEFQEMRFIIIGK---GDPELEGWARSLEEKHG--NVKVITEMLSREFVRELYGSVDFVIIPSYFEP 342 (439)
T ss_dssp HHHHHHHHHHHTSGGGGGEEEEEECC---CCHHHHHHHHHHHHHCT--TEEEECSCCCHHHHHHHHTTCSEEEECBSCCS
T ss_pred HHHHHHHHHHHhcccCCCeEEEEEcC---CChhHHHHHHHHHhhcC--CEEEEcCCCCHHHHHHHHHHCCEEEeCCCCCC
Confidence 999999999977 6899999999 7655 88999999987 56788899999999999999999999999999
Q ss_pred CchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-
Q 043397 496 CGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME- 574 (596)
Q Consensus 496 ~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~- 574 (596)
+|++++|||+||+|||+++.||+.|++.+ + +|+++++.|+++++++|.++++. +++.++++++++.+
T Consensus 343 ~~~~~~EAma~G~Pvi~s~~~~~~e~~~~--------~-~g~~~~~~d~~~la~~i~~ll~~---~~~~~~~~~~~~~~~ 410 (439)
T 3fro_A 343 FGLVALEAMCLGAIPIASAVGGLRDIITN--------E-TGILVKAGDPGELANAILKALEL---SRSDLSKFRENCKKR 410 (439)
T ss_dssp SCHHHHHHHHTTCEEEEESSTHHHHHCCT--------T-TCEEECTTCHHHHHHHHHHHHHH---TTTTTHHHHHHHHHH
T ss_pred ccHHHHHHHHCCCCeEEcCCCCcceeEEc--------C-ceEEeCCCCHHHHHHHHHHHHhc---CHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987 4 99999999999999999999984 56777777766655
Q ss_pred -hcCCHHHHHHHHHHHHHHHhc
Q 043397 575 -NDNSWNNAAGKYMEIYNSIRV 595 (596)
Q Consensus 575 -~~fs~~~~~~~~~~iy~~l~~ 595 (596)
++|||+.++++|+++|++++.
T Consensus 411 ~~~~s~~~~~~~~~~~~~~~~~ 432 (439)
T 3fro_A 411 AMSFSWEKSAERYVKAYTGSID 432 (439)
T ss_dssp HHTSCHHHHHHHHHHHHHTCSC
T ss_pred HhhCcHHHHHHHHHHHHHHHHH
Confidence 689999999999999999864
No 5
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=4.8e-44 Score=383.10 Aligned_cols=402 Identities=19% Similarity=0.246 Sum_probs=288.8
Q ss_pred cccccCCCceeEEEEeecccccc-----cccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecC
Q 043397 100 AEIEKDSNLMHIIHITAEMAPIA-----KVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHD 174 (596)
Q Consensus 100 ~~~~~~~~~mkIl~is~~~~P~~-----~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~ 174 (596)
+.....+++||||+++..++|.. ..||.++++..|+++|.++||+|+|+++........ .
T Consensus 12 ~~~~~~~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~-~-------------- 76 (438)
T 3c48_A 12 SGLVPRGSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGE-I-------------- 76 (438)
T ss_dssp -------CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCS-E--------------
T ss_pred cCcccCcchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCcc-c--------------
Confidence 33556778899999999888742 359999999999999999999999999653321000 0
Q ss_pred CceEEEEEEeeeeCCeEEEEEcCCcccc-CCCcccCCChhhHHHHHHHHHHHHHH-HHhhCCCCcEEEEcCCccchHHHH
Q 043397 175 GNWVATNAYHGVVSSIPVIFIEPSNQFF-KGKNVYGGSYNELEAYLFFSRACLEW-MQVTGVQPDIIHVHEWQIGALPLL 252 (596)
Q Consensus 175 ~~~~~~~~~~~~~~gv~v~~~~~~~~~~-~~~~~y~~~~~~~~~~~~f~~~~~~~-l~~~~~~pDVIh~~~~~~~~~~~~ 252 (596)
.....|+.++.++...... ....+ ......|.+.+.+. ++.. .+|||||+|.+..+.++.+
T Consensus 77 ---------~~~~~~v~v~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~Div~~~~~~~~~~~~~ 139 (438)
T 3c48_A 77 ---------VRVAENLRVINIAAGPYEGLSKEEL-------PTQLAAFTGGMLSFTRREK-VTYDLIHSHYWLSGQVGWL 139 (438)
T ss_dssp ---------EEEETTEEEEEECCSCSSSCCGGGG-------GGGHHHHHHHHHHHHHHHT-CCCSEEEEEHHHHHHHHHH
T ss_pred ---------ccccCCeEEEEecCCCccccchhHH-------HHHHHHHHHHHHHHHHhcc-CCCCEEEeCCccHHHHHHH
Confidence 0113678888776321100 00000 01122233344444 3332 3499999997655544444
Q ss_pred HHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeCh
Q 043397 253 YWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSP 332 (596)
Q Consensus 253 ~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~ 332 (596)
+... .++|+|+++|+....... .+ ......... .+..+.+..++.+|.|+++|+
T Consensus 140 ~~~~------~~~p~v~~~h~~~~~~~~---~~---~~~~~~~~~--------------~~~~~~~~~~~~~d~ii~~s~ 193 (438)
T 3c48_A 140 LRDL------WRIPLIHTAHTLAAVKNS---YR---DDSDTPESE--------------ARRICEQQLVDNADVLAVNTQ 193 (438)
T ss_dssp HHHH------HTCCEEEECSSCHHHHSC---C-------CCHHHH--------------HHHHHHHHHHHHCSEEEESSH
T ss_pred HHHH------cCCCEEEEecCCcccccc---cc---cccCCcchH--------------HHHHHHHHHHhcCCEEEEcCH
Confidence 3322 388999999987531000 00 000000000 111234556778999999999
Q ss_pred hhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEE
Q 043397 333 TYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCI 412 (596)
Q Consensus 333 ~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~i 412 (596)
..++.+.+ .++.+..++.+||||+|.+.|.+.... .+..++++++++ ++.++|+|+
T Consensus 194 ~~~~~~~~------~~g~~~~k~~vi~ngvd~~~~~~~~~~----------------~~~~~r~~~~~~--~~~~~i~~~ 249 (438)
T 3c48_A 194 EEMQDLMH------HYDADPDRISVVSPGADVELYSPGNDR----------------ATERSRRELGIP--LHTKVVAFV 249 (438)
T ss_dssp HHHHHHHH------HHCCCGGGEEECCCCCCTTTSCCC--------------------CHHHHHHTTCC--SSSEEEEEE
T ss_pred HHHHHHHH------HhCCChhheEEecCCccccccCCcccc----------------hhhhhHHhcCCC--CCCcEEEEE
Confidence 99888643 234556789999999998887654211 123467788886 678899999
Q ss_pred ecccccCCHHHHHHHHHHHHHc----CCEEEEEecC-CCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEE
Q 043397 413 TRLVAQKGLHLITHAIKRAEEL----GGQMILLGNS-PVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIV 487 (596)
Q Consensus 413 Grl~~~KGi~~ll~A~~~l~~~----~~~lvIvG~~-~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~ 487 (596)
||+.++||++.+++|+..+.+. +++|+|+|+. .+|++.+.++++++++++.++|.|+|+++++++..+|+.||++
T Consensus 250 G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~adv~ 329 (438)
T 3c48_A 250 GRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIV 329 (438)
T ss_dssp SCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHHCSEE
T ss_pred eeecccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHhCCEE
Confidence 9999999999999999999763 6899999972 2256788999999999998999999999999999999999999
Q ss_pred EEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHH
Q 043397 488 LVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNR 567 (596)
Q Consensus 488 l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~ 567 (596)
|+||..|+||++++|||+||+|||+++.||+.|++.+ +.+|+++++.|+++|+++|.++++ |++.+.+
T Consensus 330 v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~--------~~~g~~~~~~d~~~la~~i~~l~~----~~~~~~~ 397 (438)
T 3c48_A 330 AVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAE--------GETGLLVDGHSPHAWADALATLLD----DDETRIR 397 (438)
T ss_dssp EECCSCCSSCHHHHHHHHTTCCEEEESCTTHHHHSCB--------TTTEEEESSCCHHHHHHHHHHHHH----CHHHHHH
T ss_pred EECccccCCchHHHHHHHcCCCEEecCCCChhHHhhC--------CCcEEECCCCCHHHHHHHHHHHHc----CHHHHHH
Confidence 9999999999999999999999999999999999988 689999999999999999999999 9999999
Q ss_pred HHHHHHH--hcCCHHHHHHHHHHHHHHHhc
Q 043397 568 IVQKIME--NDNSWNNAAGKYMEIYNSIRV 595 (596)
Q Consensus 568 ~~~~~~~--~~fs~~~~~~~~~~iy~~l~~ 595 (596)
|++++.+ .+|||+.++++++++|++++.
T Consensus 398 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 427 (438)
T 3c48_A 398 MGEDAVEHARTFSWAATAAQLSSLYNDAIA 427 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 9876654 349999999999999999874
No 6
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=3.4e-44 Score=391.26 Aligned_cols=413 Identities=17% Similarity=0.207 Sum_probs=295.3
Q ss_pred CceeEEEEeeccccc---------ccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCce
Q 043397 107 NLMHIIHITAEMAPI---------AKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNW 177 (596)
Q Consensus 107 ~~mkIl~is~~~~P~---------~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (596)
++|||++++..++|. ...||.++++.+|+++|.++||+|+|+++............. +..
T Consensus 6 ~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~-----~~~------ 74 (499)
T 2r60_A 6 RIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGE-----IDY------ 74 (499)
T ss_dssp -CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBGGGCCS-----EEE------
T ss_pred ccceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCCCcccccchhhh-----HHh------
Confidence 469999999988774 246999999999999999999999999965432110000000 000
Q ss_pred EEEEEEeeeeCCeEEEEEcCCcc-ccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHH
Q 043397 178 VATNAYHGVVSSIPVIFIEPSNQ-FFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDM 256 (596)
Q Consensus 178 ~~~~~~~~~~~gv~v~~~~~~~~-~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~ 256 (596)
.....|++++.++.... .+.....+ .....+...+.++++....+|||||+|.+..+.++.++...
T Consensus 75 ------~~~~~gv~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~l~~~~~~~Divh~~~~~~~~~~~~~~~~ 141 (499)
T 2r60_A 75 ------YQETNKVRIVRIPFGGDKFLPKEELW-------PYLHEYVNKIINFYREEGKFPQVVTTHYGDGGLAGVLLKNI 141 (499)
T ss_dssp ------CTTCSSEEEEEECCSCSSCCCGGGCG-------GGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHH
T ss_pred ------ccCCCCeEEEEecCCCcCCcCHHHHH-------HHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHh
Confidence 00026788888773211 11110111 01122334555566554468999999976555444443322
Q ss_pred hhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHH
Q 043397 257 YQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLK 336 (596)
Q Consensus 257 ~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~ 336 (596)
.++|+|+|+|+..+... ......+....... +.+. ......+.+..++.+|.|+++|+..++
T Consensus 142 ------~~~p~v~~~H~~~~~~~---~~~~~~~~~~~~~~---~~~~------~~~~~~~~~~~~~~ad~vi~~S~~~~~ 203 (499)
T 2r60_A 142 ------KGLPFTFTGHSLGAQKM---EKLNVNTSNFKEMD---ERFK------FHRRIIAERLTMSYADKIIVSTSQERF 203 (499)
T ss_dssp ------HCCCEEEECSSCHHHHH---HTTCCCSTTSHHHH---HHHC------HHHHHHHHHHHHHHCSEEEESSHHHHH
T ss_pred ------cCCcEEEEccCcccccc---hhhccCCCCcchhh---hhHH------HHHHHHHHHHHHhcCCEEEECCHHHHH
Confidence 48899999998753110 00000000000000 0000 001112345677889999999999988
Q ss_pred HHhhcchhhhhhh-c----cCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcC-----CCCCCCc
Q 043397 337 ETLCSGWLASVLI-T----HRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLG-----LKSEGTV 406 (596)
Q Consensus 337 ~~~~~g~l~~~~~-~----~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~-----l~~~~~~ 406 (596)
.+.... .++ . +..++.+||||+|.+.|.+... ...+..++++++ ++ ++.
T Consensus 204 ~~~~~~----~~g~~~~~~~~~ki~vi~ngvd~~~~~~~~~---------------~~~~~~~r~~~~~~~~~~~--~~~ 262 (499)
T 2r60_A 204 GQYSHD----LYRGAVNVEDDDKFSVIPPGVNTRVFDGEYG---------------DKIKAKITKYLERDLGSER--MEL 262 (499)
T ss_dssp HTTTSG----GGTTTCCTTCGGGEEECCCCBCTTTSSSCCC---------------HHHHHHHHHHHHHHSCGGG--TTS
T ss_pred HHHhhh----cccccccccCCCCeEEECCCcChhhcCccch---------------hhhHHHHHHHhcccccccC--CCC
Confidence 864320 022 2 4578999999999988866521 123456677777 64 678
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHH--c-CCEEEEEecCCCCc----------c---hHHHHHHHHHcCCCCcEEEEe
Q 043397 407 PLVVCITRLVAQKGLHLITHAIKRAEE--L-GGQMILLGNSPVHW----------V---QKDFEDLANLHNKGTSTRILL 470 (596)
Q Consensus 407 ~~il~iGrl~~~KGi~~ll~A~~~l~~--~-~~~lvIvG~~~~g~----------~---~~~l~~~~~~~~~~~~V~~~g 470 (596)
++|+|+||+.++||++.+++|++.+.+ + .++|+|+|+ .+|+ . .+.++++++++++.++|+|+|
T Consensus 263 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~-~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G 341 (499)
T 2r60_A 263 PAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRG-IENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFP 341 (499)
T ss_dssp CEEEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESS-CSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEE
T ss_pred cEEEEeecCccccCHHHHHHHHHHHHHhCCCceEEEEECC-CCCcccccccccccchHHHHHHHHHHHhcCCCceEEECC
Confidence 899999999999999999999998865 3 458999997 2232 1 788999999999999999999
Q ss_pred ccCHHHHHHHHHhC----CEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHH
Q 043397 471 MYSEELSHMLYAAA----DIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGS 546 (596)
Q Consensus 471 ~~~~~~l~~~~a~a----Di~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~ 546 (596)
+++++++..+|++| |++|+||.+|+||++++|||+||+|||+++.||+.|++.+ +.+|+++++.|+++
T Consensus 342 ~v~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v~~--------~~~g~l~~~~d~~~ 413 (499)
T 2r60_A 342 LNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDG--------GKYGVLVDPEDPED 413 (499)
T ss_dssp CCSHHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHTGG--------GTSSEEECTTCHHH
T ss_pred CCCHHHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecCCCHHHHhcC--------CceEEEeCCCCHHH
Confidence 99999999999999 9999999999999999999999999999999999999988 67999999999999
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHhc
Q 043397 547 LNWALDRAFRHFIDKPEEWNRIVQKIME---NDNSWNNAAGKYMEIYNSIRV 595 (596)
Q Consensus 547 la~~i~~ll~~~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~iy~~l~~ 595 (596)
|+++|.++++ |++.+.++++++.+ ++|||+.++++|.++|++++.
T Consensus 414 la~~i~~ll~----~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~~ 461 (499)
T 2r60_A 414 IARGLLKAFE----SEETWSAYQEKGKQRVEERYTWQETARGYLEVIQEIAD 461 (499)
T ss_dssp HHHHHHHHHS----CHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh----CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 9999999998 99999999876654 569999999999999999864
No 7
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=3e-42 Score=363.22 Aligned_cols=365 Identities=17% Similarity=0.179 Sum_probs=285.9
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeee
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGV 186 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (596)
++|||++++..++| ..||.++++..++++| +||+|+|+++............
T Consensus 3 ~~mkIl~v~~~~~p--~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~~~~------------------------ 54 (394)
T 3okp_A 3 ASRKTLVVTNDFPP--RIGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHAYDK------------------------ 54 (394)
T ss_dssp -CCCEEEEESCCTT--SCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHHHHT------------------------
T ss_pred CCceEEEEeCccCC--ccchHHHHHHHHHHHh--cCCeEEEEECCCCccchhhhcc------------------------
Confidence 47999999999887 5799999999999999 6999999997655431111110
Q ss_pred eCCeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccc-hHHHHHHHHhhhccCCCC
Q 043397 187 VSSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIG-ALPLLYWDMYQSLSLKKP 265 (596)
Q Consensus 187 ~~gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~-~~~~~~~~~~~~~~~~~~ 265 (596)
..++.++.++....+ . ...+...+.++++. .+||+||+|..... .+..+++. .++
T Consensus 55 ~~~~~~~~~~~~~~~-~--------------~~~~~~~l~~~~~~--~~~Dvv~~~~~~~~~~~~~~~~~-------~~~ 110 (394)
T 3okp_A 55 TLDYEVIRWPRSVML-P--------------TPTTAHAMAEIIRE--REIDNVWFGAAAPLALMAGTAKQ-------AGA 110 (394)
T ss_dssp TCSSEEEEESSSSCC-S--------------CHHHHHHHHHHHHH--TTCSEEEESSCTTGGGGHHHHHH-------TTC
T ss_pred ccceEEEEccccccc-c--------------chhhHHHHHHHHHh--cCCCEEEECCcchHHHHHHHHHh-------cCC
Confidence 256777777632111 1 01234455555554 58999999975543 23322221 355
Q ss_pred -cEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchh
Q 043397 266 -RIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWL 344 (596)
Q Consensus 266 -pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l 344 (596)
++|+++|+...... ... ....+++..++.+|.++++|+..++.+.+.+
T Consensus 111 ~~~i~~~h~~~~~~~-----------~~~------------------~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~-- 159 (394)
T 3okp_A 111 SKVIASTHGHEVGWS-----------MLP------------------GSRQSLRKIGTEVDVLTYISQYTLRRFKSAF-- 159 (394)
T ss_dssp SEEEEECCSTHHHHT-----------TSH------------------HHHHHHHHHHHHCSEEEESCHHHHHHHHHHH--
T ss_pred CcEEEEeccchhhhh-----------hcc------------------hhhHHHHHHHHhCCEEEEcCHHHHHHHHHhc--
Confidence 48999996542000 000 1122345566789999999999998865432
Q ss_pred hhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHH
Q 043397 345 ASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLI 424 (596)
Q Consensus 345 ~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~l 424 (596)
....++.+||||+|.+.+.+.. ...+..++++++++ ++.++|+|+||+.+.||++.+
T Consensus 160 -----~~~~~~~vi~ngv~~~~~~~~~----------------~~~~~~~~~~~~~~--~~~~~i~~~G~~~~~Kg~~~l 216 (394)
T 3okp_A 160 -----GSHPTFEHLPSGVDVKRFTPAT----------------PEDKSATRKKLGFT--DTTPVIACNSRLVPRKGQDSL 216 (394)
T ss_dssp -----CSSSEEEECCCCBCTTTSCCCC----------------HHHHHHHHHHTTCC--TTCCEEEEESCSCGGGCHHHH
T ss_pred -----CCCCCeEEecCCcCHHHcCCCC----------------chhhHHHHHhcCCC--cCceEEEEEeccccccCHHHH
Confidence 2357999999999998887631 12456788899986 677999999999999999999
Q ss_pred HHHHHHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCC-------CC
Q 043397 425 THAIKRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIY-------EP 495 (596)
Q Consensus 425 l~A~~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~-------E~ 495 (596)
++|++++.+ ++++|+|+|+ |++.+.+++++ .++.++|+|+|+++++++..+|+.||++|+||.+ |+
T Consensus 217 i~a~~~l~~~~~~~~l~i~G~---g~~~~~l~~~~--~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~ps~~~~~~~~~e~ 291 (394)
T 3okp_A 217 IKAMPQVIAARPDAQLLIVGS---GRYESTLRRLA--TDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVEG 291 (394)
T ss_dssp HHHHHHHHHHSTTCEEEEECC---CTTHHHHHHHT--GGGGGGEEEEESCCHHHHHHHHHHCSEEEECCCCBGGGTBCCS
T ss_pred HHHHHHHHhhCCCeEEEEEcC---chHHHHHHHHH--hcccCeEEEcCCCCHHHHHHHHHhCCEEEecCccccccccccc
Confidence 999999876 5899999999 88889999888 5556789999999999999999999999999999 99
Q ss_pred CchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-
Q 043397 496 CGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME- 574 (596)
Q Consensus 496 ~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~- 574 (596)
+|++++|||++|+|||+++.||..|++.+ + +|+++++.|+++++++|.++++ +++.++++++++.+
T Consensus 292 ~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~--------~-~g~~~~~~d~~~l~~~i~~l~~----~~~~~~~~~~~~~~~ 358 (394)
T 3okp_A 292 LGIVYLEAQACGVPVIAGTSGGAPETVTP--------A-TGLVVEGSDVDKLSELLIELLD----DPIRRAAMGAAGRAH 358 (394)
T ss_dssp SCHHHHHHHHTTCCEEECSSTTGGGGCCT--------T-TEEECCTTCHHHHHHHHHHHHT----CHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHcCCCEEEeCCCChHHHHhc--------C-CceEeCCCCHHHHHHHHHHHHh----CHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988 6 9999999999999999999998 99999999876654
Q ss_pred --hcCCHHHHHHHHHHHHHHHhc
Q 043397 575 --NDNSWNNAAGKYMEIYNSIRV 595 (596)
Q Consensus 575 --~~fs~~~~~~~~~~iy~~l~~ 595 (596)
++|||+.++++|.++|++++.
T Consensus 359 ~~~~~s~~~~~~~~~~~~~~~~r 381 (394)
T 3okp_A 359 VEAEWSWEIMGERLTNILQSEPR 381 (394)
T ss_dssp HHHHTBHHHHHHHHHHHHHSCCC
T ss_pred HHHhCCHHHHHHHHHHHHHHhcc
Confidence 579999999999999998763
No 8
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=3.4e-43 Score=396.30 Aligned_cols=429 Identities=12% Similarity=0.128 Sum_probs=296.3
Q ss_pred CCCceeEEEEeeccc---------ccccccCHHHHHhH--------HHHHHHhcCCeEE----EEeccccchhhhhhccc
Q 043397 105 DSNLMHIIHITAEMA---------PIAKVGGLGDVVTG--------LARACLSRGHTVD----IMLPFYECIQKQEISDL 163 (596)
Q Consensus 105 ~~~~mkIl~is~~~~---------P~~~~GG~~~~~~~--------La~aL~~~Gh~V~----vi~p~~~~~~~~~~~~~ 163 (596)
....|+|+++|...+ | .+||...++.+ |+++|+++||+|+ |+|.............
T Consensus 275 ~~~~~~i~~is~hg~~~~~~~lG~~--dtGGq~vyV~e~~~al~~ela~~L~~~G~~V~~~V~v~Tr~~~~~~g~~y~~- 351 (816)
T 3s28_A 275 VPMVFNVVILSPHGYFAQDNVLGYP--DTGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDAVGTTCGE- 351 (816)
T ss_dssp SCCCCEEEEECCSSCCCSSSCTTST--TCSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECCTTCTTSSTTS-
T ss_pred CCceeEEEEEcCCcccCccccCCCC--CCCCceeeHHHHHHHHHHHHHHHHHHCCCccceeeEEEeCCCCCCCCCccCC-
Confidence 345689999999887 6 57999999985 6666677999886 8885543211000000
Q ss_pred ceeeeEEeecCCceEEEEEEeeeeCCeEEEEEcCCc------cccCCCcccCCChhhHHHHHHHH-HHHHHHHHhhCCCC
Q 043397 164 ALITTYNSYHDGNWVATNAYHGVVSSIPVIFIEPSN------QFFKGKNVYGGSYNELEAYLFFS-RACLEWMQVTGVQP 236 (596)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~------~~~~~~~~y~~~~~~~~~~~~f~-~~~~~~l~~~~~~p 236 (596)
... .....+|+.|++++... .+..+..++.. ...|. ..+..++.....+|
T Consensus 352 ----~~e------------~i~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~-------L~~F~~~~l~~il~~~~~~P 408 (816)
T 3s28_A 352 ----RLE------------RVYDSEYCDILRVPFRTEKGIVRKWISRFEVWPY-------LETYTEDAAVELSKELNGKP 408 (816)
T ss_dssp ----SEE------------ECTTCSSEEEEEECEEETTEEECSCCCTTTCGGG-------HHHHHHHHHHHHHHHCSSCC
T ss_pred ----cce------------eecCcCCeEEEEecCCCccccccccccHHHHHHH-------HHHHHHHHHHHHHHhcCCCC
Confidence 000 00113588999887321 12223323321 12233 34445555555789
Q ss_pred cEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchh
Q 043397 237 DIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSL 316 (596)
Q Consensus 237 DVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (596)
||||+|.|.++.++.++... .++|+|+|.|+....... ..+..+. .....+. ...++..
T Consensus 409 DVIHsH~~~sglva~llar~------~gvP~V~T~Hsl~~~k~~------~~~~~~~---~~~~~y~------~~~r~~a 467 (816)
T 3s28_A 409 DLIIGNYSDGNLVASLLAHK------LGVTQCTIAHALEKTKYP------DSDIYWK---KLDDKYH------FSCQFTA 467 (816)
T ss_dssp SEEEEEHHHHHHHHHHHHHH------HTCCEEEECSCCHHHHST------TTTTTHH---HHHHHHC------HHHHHHH
T ss_pred eEEEeCCchHHHHHHHHHHH------cCCCEEEEEecccccccc------cccchhh---hHHHHHH------HHHHHHH
Confidence 99999988877777665543 489999999987531100 0011111 1111000 0012233
Q ss_pred hchhccccCeEEEeChhhHHHHhhc-chhhhh--------------hhccCCcEEEeeCCCCCCCcCCCCcCCC--cccc
Q 043397 317 LKGGIVYSNAVVTVSPTYLKETLCS-GWLASV--------------LITHRDKYFGILNGIDTVIWNPATDAFL--PAKF 379 (596)
Q Consensus 317 ~~~~~~~ad~vi~vS~~~~~~~~~~-g~l~~~--------------~~~~~~ki~vI~nGid~~~~~p~~~~~~--~~~~ 379 (596)
.+.+++.||.|+++|+..++.+.+. +-.... ......++.+||||+|.+.|.|..+... ...+
T Consensus 468 E~~~l~~AD~VIa~S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~ 547 (816)
T 3s28_A 468 DIFAMNHTDFIITSTFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFH 547 (816)
T ss_dssp HHHHHHHSSEEEESCHHHHHCCSSSCCTTGGGSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGH
T ss_pred HHHHHHhCCEEEECCHHHHHHHHHHHHHhhhhhccccchhhhcccccccCCCCEEEECCCcCHHHcCccchhhhhhhhcc
Confidence 4557888999999999888864321 000000 0112239999999999999987643210 0000
Q ss_pred CCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHH--cCCEEEEEecCCCCc---------
Q 043397 380 HAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--LGGQMILLGNSPVHW--------- 448 (596)
Q Consensus 380 ~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~~~~lvIvG~~~~g~--------- 448 (596)
. .++.........++.+|+..++++++|+|+||+.+.||++.+++|+.++.+ ++++|+|+|+ |+
T Consensus 548 ~--~i~~~l~~p~~~r~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~---g~~~~~~~~e~ 622 (816)
T 3s28_A 548 S--EIEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGG---DRRKESKDNEE 622 (816)
T ss_dssp H--HHHHHHHCSCCBTTEESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECC---CTTSCCCCHHH
T ss_pred c--cccccccchhhHHHHhcccCCCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeC---CCcccccchhh
Confidence 0 000000011233456676434788999999999999999999999999865 6899999999 66
Q ss_pred --chHHHHHHHHHcCCCCcEEEEec----cCHHHHHHHHH-hCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCcccc
Q 043397 449 --VQKDFEDLANLHNKGTSTRILLM----YSEELSHMLYA-AADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADT 521 (596)
Q Consensus 449 --~~~~l~~~~~~~~~~~~V~~~g~----~~~~~l~~~~a-~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~ 521 (596)
+.+.++++++++++.++|+|+|. ++.+++..+|+ +||++++||.+|+||++++||||||+|||+++.||+.|+
T Consensus 623 ~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~~Ei 702 (816)
T 3s28_A 623 KAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEI 702 (816)
T ss_dssp HHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEeCCCChHHH
Confidence 67888999999999999999994 45688999988 689999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHH
Q 043397 522 VFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME---NDNSWNNAAGKYMEIYNSI 593 (596)
Q Consensus 522 i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~iy~~l 593 (596)
+.+ +.+|+++++.|+++++++|.++++...+|++.+.+|++++.+ ++|||+.++++|+++|+.+
T Consensus 703 V~d--------g~~Gllv~p~D~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~ 769 (816)
T 3s28_A 703 IVH--------GKSGFHIDPYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVY 769 (816)
T ss_dssp CCB--------TTTBEEECTTSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred Hcc--------CCcEEEeCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 988 789999999999999999988873222299999999977665 7899999999999999865
No 9
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=7.7e-41 Score=353.40 Aligned_cols=368 Identities=20% Similarity=0.201 Sum_probs=270.2
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeC
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVS 188 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (596)
|+.-+.+..+ | ..||.+.++..|+++|.++||+|+|+++....... ....
T Consensus 14 ~~~~~~~~~~-p--~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~---------------------------~~~~ 63 (394)
T 2jjm_A 14 MKLKIGITCY-P--SVGGSGVVGTELGKQLAERGHEIHFITSGLPFRLN---------------------------KVYP 63 (394)
T ss_dssp -CCEEEEECC-C----CHHHHHHHHHHHHHHHTTCEEEEECSSCC-------------------------------CCCT
T ss_pred heeeeehhcC-C--CCCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCccc---------------------------ccCC
Confidence 5555554555 5 46999999999999999999999999964321100 0013
Q ss_pred CeEEEEEcCCc-cccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchH-HHHHHHHhhhccCCCCc
Q 043397 189 SIPVIFIEPSN-QFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGAL-PLLYWDMYQSLSLKKPR 266 (596)
Q Consensus 189 gv~v~~~~~~~-~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~-~~~~~~~~~~~~~~~~p 266 (596)
++.+..++... ..+.. . . . ...+...+.++++. .+|||||+|.+..... +.+..... ..++|
T Consensus 64 ~i~~~~~~~~~~~~~~~----~-~-~----~~~~~~~l~~~l~~--~~~Dvv~~~~~~~~~~~~~~~~~~~----~~~~p 127 (394)
T 2jjm_A 64 NIYFHEVTVNQYSVFQY----P-P-Y----DLALASKMAEVAQR--ENLDILHVHYAIPHAICAYLAKQMI----GERIK 127 (394)
T ss_dssp TEEEECCCCC----CCS----C-C-H----HHHHHHHHHHHHHH--HTCSEEEECSSTTHHHHHHHHHHHT----TTCSE
T ss_pred ceEEEeccccccccccc----c-c-c----cHHHHHHHHHHHHH--cCCCEEEEcchhHHHHHHHHHHHhh----cCCCC
Confidence 44443333110 00000 0 0 0 11233444455544 5899999996554322 22222210 12689
Q ss_pred EEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhh
Q 043397 267 IVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLAS 346 (596)
Q Consensus 267 vv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~ 346 (596)
+|+++|+..... .+.. . ....+.+..++.+|.++++|+..++.+...+
T Consensus 128 ~v~~~h~~~~~~---------~~~~-~------------------~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~---- 175 (394)
T 2jjm_A 128 IVTTLHGTDITV---------LGSD-P------------------SLNNLIRFGIEQSDVVTAVSHSLINETHELV---- 175 (394)
T ss_dssp EEEECCHHHHHT---------TTTC-T------------------TTHHHHHHHHHHSSEEEESCHHHHHHHHHHT----
T ss_pred EEEEEecCcccc---------cCCC-H------------------HHHHHHHHHHhhCCEEEECCHHHHHHHHHhh----
Confidence 999999753200 0000 0 1112345567789999999999988865432
Q ss_pred hhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHH
Q 043397 347 VLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITH 426 (596)
Q Consensus 347 ~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~ 426 (596)
. ...++.+||||+|.+.+.+.. +..++++++++ ++.++|+|+||+.++||++.+++
T Consensus 176 --~-~~~~~~vi~ngv~~~~~~~~~-------------------~~~~~~~~~~~--~~~~~i~~~G~~~~~Kg~~~li~ 231 (394)
T 2jjm_A 176 --K-PNKDIQTVYNFIDERVYFKRD-------------------MTQLKKEYGIS--ESEKILIHISNFRKVKRVQDVVQ 231 (394)
T ss_dssp --C-CSSCEEECCCCCCTTTCCCCC-------------------CHHHHHHTTCC-----CEEEEECCCCGGGTHHHHHH
T ss_pred --C-CcccEEEecCCccHHhcCCcc-------------------hHHHHHHcCCC--CCCeEEEEeeccccccCHHHHHH
Confidence 2 257899999999988876541 23466778875 67789999999999999999999
Q ss_pred HHHHHHH-cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHh
Q 043397 427 AIKRAEE-LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMR 505 (596)
Q Consensus 427 A~~~l~~-~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma 505 (596)
|++.+.+ .+++|+|+|+ |+..+.++++++++++.++|.|+|.. +++..+|+.||++++||..|++|++++|||+
T Consensus 232 a~~~l~~~~~~~l~i~G~---g~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~e~~~~~~~EAma 306 (394)
T 2jjm_A 232 AFAKIVTEVDAKLLLVGD---GPEFCTILQLVKNLHIEDRVLFLGKQ--DNVAELLAMSDLMLLLSEKESFGLVLLEAMA 306 (394)
T ss_dssp HHHHHHHSSCCEEEEECC---CTTHHHHHHHHHTTTCGGGBCCCBSC--SCTHHHHHTCSEEEECCSCCSCCHHHHHHHH
T ss_pred HHHHHHhhCCCEEEEECC---chHHHHHHHHHHHcCCCCeEEEeCch--hhHHHHHHhCCEEEeccccCCCchHHHHHHh
Confidence 9999976 4789999999 88889999999999988899999974 4599999999999999999999999999999
Q ss_pred cCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH---hcCCHHHH
Q 043397 506 YGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME---NDNSWNNA 582 (596)
Q Consensus 506 ~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~---~~fs~~~~ 582 (596)
+|+|||+++.||+.|++.+ +.+|+++++.|+++++++|.++++ |++.+.+|++++.+ ++|||+.+
T Consensus 307 ~G~PvI~~~~~~~~e~v~~--------~~~g~~~~~~d~~~la~~i~~l~~----~~~~~~~~~~~~~~~~~~~~s~~~~ 374 (394)
T 2jjm_A 307 CGVPCIGTRVGGIPEVIQH--------GDTGYLCEVGDTTGVADQAIQLLK----DEELHRNMGERARESVYEQFRSEKI 374 (394)
T ss_dssp TTCCEEEECCTTSTTTCCB--------TTTEEEECTTCHHHHHHHHHHHHH----CHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred cCCCEEEecCCChHHHhhc--------CCceEEeCCCCHHHHHHHHHHHHc----CHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 9999999999999999988 689999999999999999999999 99999988866554 78999999
Q ss_pred HHHHHHHHHHHhc
Q 043397 583 AGKYMEIYNSIRV 595 (596)
Q Consensus 583 ~~~~~~iy~~l~~ 595 (596)
+++|+++|++++.
T Consensus 375 ~~~~~~~~~~~~~ 387 (394)
T 2jjm_A 375 VSQYETIYYDVLR 387 (394)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999864
No 10
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=3.5e-40 Score=350.91 Aligned_cols=365 Identities=18% Similarity=0.174 Sum_probs=262.3
Q ss_pred CCCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEe
Q 043397 105 DSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYH 184 (596)
Q Consensus 105 ~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (596)
.-++|||++++... ..||.++++..|+++|.++||+|++++................
T Consensus 37 ~~~~mkIl~v~~~~----~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~------------------- 93 (416)
T 2x6q_A 37 KLKGRSFVHVNSTS----FGGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFFNVTKTFHN------------------- 93 (416)
T ss_dssp TTTTCEEEEEESCS----SSSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHHH-------------------
T ss_pred hhhccEEEEEeCCC----CCCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchhhhhcccce-------------------
Confidence 34679999998763 4699999999999999999999999885432110000000000
Q ss_pred eeeCCeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCC
Q 043397 185 GVVSSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKK 264 (596)
Q Consensus 185 ~~~~gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~ 264 (596)
...++..+.+. ......+..+.+.+.+.++ ..+|||||+|++....+..++ ..+
T Consensus 94 -~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~--~~~~Dvv~~~~~~~~~~~~~~--------~~~ 147 (416)
T 2x6q_A 94 -ALQGNESLKLT---------------EEMKELYLNVNRENSKFID--LSSFDYVLVHDPQPAALIEFY--------EKK 147 (416)
T ss_dssp -HHTTCCSCCCC---------------HHHHHHHHHHHHHHHHSSC--GGGSSEEEEESSTTGGGGGGS--------CCC
T ss_pred -eeccccccccc---------------HHHHHHHHHHHHHHHHHHh--hcCCCEEEEeccchhhHHHHH--------Hhc
Confidence 00111100000 0111111112222222222 248999999986654333221 124
Q ss_pred CcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEE-EeChhhHHHHhhcch
Q 043397 265 PRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVV-TVSPTYLKETLCSGW 343 (596)
Q Consensus 265 ~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi-~vS~~~~~~~~~~g~ 343 (596)
+|+|+++|+...... ...+ .+++..+..+|.++ ++|+...+.
T Consensus 148 ~p~v~~~h~~~~~~~------------~~~~-------------------~~~~~~~~~~~~~i~~~s~~~~~~------ 190 (416)
T 2x6q_A 148 SPWLWRCHIDLSSPN------------REFW-------------------EFLRRFVEKYDRYIFHLPEYVQPE------ 190 (416)
T ss_dssp SCEEEECCSCCSSCC------------HHHH-------------------HHHHHHHTTSSEEEESSGGGSCTT------
T ss_pred CCEEEEEccccCCcc------------HHHH-------------------HHHHHHHHhCCEEEEechHHHHhh------
Confidence 899999998653210 0011 11222344567666 555533332
Q ss_pred hhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHH
Q 043397 344 LASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHL 423 (596)
Q Consensus 344 l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ 423 (596)
.+..++.+||||+|...+.+... ....+..++++++++ ++.++|+|+||+.++||++.
T Consensus 191 ------~~~~~~~vi~ngvd~~~~~~~~~--------------~~~~~~~~r~~~~~~--~~~~~i~~vGrl~~~Kg~~~ 248 (416)
T 2x6q_A 191 ------LDRNKAVIMPPSIDPLSEKNVEL--------------KQTEILRILERFDVD--PEKPIITQVSRFDPWKGIFD 248 (416)
T ss_dssp ------SCTTTEEECCCCBCTTSTTTSCC--------------CHHHHHHHHHHTTCC--TTSCEEEEECCCCTTSCHHH
T ss_pred ------CCccceEEeCCCCChhhhccccc--------------ChhhHHHHHHHhCCC--CCCcEEEEEeccccccCHHH
Confidence 12478999999999866543211 012345678888886 67899999999999999999
Q ss_pred HHHHHHHHHH--cCCEEEEEecCCCCcc-----hHHHHHHHHHcCCCCcEEEEeccC---HHHHHHHHHhCCEEEEcCCC
Q 043397 424 ITHAIKRAEE--LGGQMILLGNSPVHWV-----QKDFEDLANLHNKGTSTRILLMYS---EELSHMLYAAADIVLVPSIY 493 (596)
Q Consensus 424 ll~A~~~l~~--~~~~lvIvG~~~~g~~-----~~~l~~~~~~~~~~~~V~~~g~~~---~~~l~~~~a~aDi~l~PS~~ 493 (596)
+++|++.+.+ ++++|+|+|+ |+. .+.++++++++++.++|+|+|+++ ++++..+|++||++|+||.+
T Consensus 249 li~a~~~l~~~~~~~~l~i~G~---g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~~ 325 (416)
T 2x6q_A 249 VIEIYRKVKEKIPGVQLLLVGV---MAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIR 325 (416)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEC---CCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCSS
T ss_pred HHHHHHHHHHhCCCeEEEEEec---CcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHhCCEEEECCCc
Confidence 9999999976 5899999999 643 567888999999989999999665 78899999999999999999
Q ss_pred CCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 043397 494 EPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIM 573 (596)
Q Consensus 494 E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~ 573 (596)
|+||++++|||+||+|||+++.||++|++.+ +.+|++++ |+++|+++|.++++ |++.++++++++.
T Consensus 326 E~~~~~~lEAma~G~PvI~~~~~g~~e~i~~--------~~~g~l~~--d~~~la~~i~~ll~----~~~~~~~~~~~a~ 391 (416)
T 2x6q_A 326 EGFGLTVTEAMWKGKPVIGRAVGGIKFQIVD--------GETGFLVR--DANEAVEVVLYLLK----HPEVSKEMGAKAK 391 (416)
T ss_dssp CSSCHHHHHHHHTTCCEEEESCHHHHHHCCB--------TTTEEEES--SHHHHHHHHHHHHH----CHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHcCCCEEEccCCCChhheec--------CCCeEEEC--CHHHHHHHHHHHHh----CHHHHHHHHHHHH
Confidence 9999999999999999999999999999988 68999997 99999999999999 9999999987665
Q ss_pred H---hcCCHHHHHHHHHHHHHHHh
Q 043397 574 E---NDNSWNNAAGKYMEIYNSIR 594 (596)
Q Consensus 574 ~---~~fs~~~~~~~~~~iy~~l~ 594 (596)
+ ++|||+.++++|.++|++++
T Consensus 392 ~~~~~~fs~~~~~~~~~~~~~~l~ 415 (416)
T 2x6q_A 392 ERVRKNFIITKHMERYLDILNSLG 415 (416)
T ss_dssp HHHHHHTBHHHHHHHHHHHHHTC-
T ss_pred HHHHHHcCHHHHHHHHHHHHHHhh
Confidence 4 58999999999999999875
No 11
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=2.6e-40 Score=349.97 Aligned_cols=367 Identities=17% Similarity=0.178 Sum_probs=266.1
Q ss_pred ccccCCCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEE
Q 043397 101 EIEKDSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVAT 180 (596)
Q Consensus 101 ~~~~~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (596)
++.+..++|||++++..++| ..||.+.++..++++|.++||+|+++++............
T Consensus 13 ~~~~~~~~MkIl~i~~~~~~--~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~------------------ 72 (406)
T 2gek_A 13 GLVPRGSHMRIGMVCPYSFD--VPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVV------------------ 72 (406)
T ss_dssp --------CEEEEECSSCTT--SCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTEE------------------
T ss_pred CcccCCCcceEEEEeccCCC--CCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCCcccc------------------
Confidence 35667788999999976655 4699999999999999999999999996543220000000
Q ss_pred EEEeeeeCCeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhc
Q 043397 181 NAYHGVVSSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSL 260 (596)
Q Consensus 181 ~~~~~~~~gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~ 260 (596)
..+ .++.++....... ..+ ...+...+.++++. .+||+||+|.+........+..
T Consensus 73 ------~~~-~~~~~~~~~~~~~--~~~---------~~~~~~~l~~~l~~--~~~Dii~~~~~~~~~~~~~~~~----- 127 (406)
T 2gek_A 73 ------SGG-KAVPIPYNGSVAR--LRF---------GPATHRKVKKWIAE--GDFDVLHIHEPNAPSLSMLALQ----- 127 (406)
T ss_dssp ------ECC-CCC--------------C---------CHHHHHHHHHHHHH--HCCSEEEEECCCSSSHHHHHHH-----
T ss_pred ------cCC-cEEeccccCCccc--ccc---------cHHHHHHHHHHHHh--cCCCEEEECCccchHHHHHHHH-----
Confidence 011 1111110000000 000 01122344455544 4899999998766544333322
Q ss_pred cCCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhh
Q 043397 261 SLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLC 340 (596)
Q Consensus 261 ~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~ 340 (596)
..++|+|+++|+..+... ..... ..+++..++.+|.++++|+..++.+.+
T Consensus 128 -~~~~~~i~~~h~~~~~~~--------------~~~~~---------------~~~~~~~~~~~d~ii~~s~~~~~~~~~ 177 (406)
T 2gek_A 128 -AAEGPIVATFHTSTTKSL--------------TLSVF---------------QGILRPYHEKIIGRIAVSDLARRWQME 177 (406)
T ss_dssp -HEESSEEEEECCCCCSHH--------------HHHHH---------------HSTTHHHHTTCSEEEESSHHHHHHHHH
T ss_pred -hcCCCEEEEEcCcchhhh--------------hHHHH---------------HHHHHHHHhhCCEEEECCHHHHHHHHH
Confidence 237899999998653210 00000 011224567799999999988888643
Q ss_pred cchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecc-cccC
Q 043397 341 SGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRL-VAQK 419 (596)
Q Consensus 341 ~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl-~~~K 419 (596)
. .+..++ +||||+|.+.+.+... ..+++ .+.++|+|+||+ .+.|
T Consensus 178 ~--------~~~~~~-vi~~~v~~~~~~~~~~------------------------~~~~~--~~~~~i~~~G~~~~~~K 222 (406)
T 2gek_A 178 A--------LGSDAV-EIPNGVDVASFADAPL------------------------LDGYP--REGRTVLFLGRYDEPRK 222 (406)
T ss_dssp H--------HSSCEE-ECCCCBCHHHHHTCCC------------------------CTTCS--CSSCEEEEESCTTSGGG
T ss_pred h--------cCCCcE-EecCCCChhhcCCCch------------------------hhhcc--CCCeEEEEEeeeCcccc
Confidence 1 235678 9999999876654321 01111 356899999999 9999
Q ss_pred CHHHHHHHHHHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCC-CCCC
Q 043397 420 GLHLITHAIKRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSI-YEPC 496 (596)
Q Consensus 420 Gi~~ll~A~~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~-~E~~ 496 (596)
|++.+++|+..+.+ ++++|+|+|+ |+. +.++++++++ .++|.|+|+++++++..+|+.||++|+||. .|++
T Consensus 223 g~~~li~a~~~l~~~~~~~~l~i~G~---~~~-~~l~~~~~~~--~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~e~~ 296 (406)
T 2gek_A 223 GMAVLLAALPKLVARFPDVEILIVGR---GDE-DELREQAGDL--AGHLRFLGQVDDATKASAMRSADVYCAPHLGGESF 296 (406)
T ss_dssp CHHHHHHHHHHHHTTSTTCEEEEESC---SCH-HHHHHHTGGG--GGGEEECCSCCHHHHHHHHHHSSEEEECCCSCCSS
T ss_pred CHHHHHHHHHHHHHHCCCeEEEEEcC---CcH-HHHHHHHHhc--cCcEEEEecCCHHHHHHHHHHCCEEEecCCCCCCC
Confidence 99999999999976 5899999999 777 8888888876 578999999999999999999999999996 8999
Q ss_pred chHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--
Q 043397 497 GLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME-- 574 (596)
Q Consensus 497 gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~-- 574 (596)
|++++|||++|+|||+++.||+.|++.+ +.+|+++++.|+++++++|.++++ +++.+.++++++.+
T Consensus 297 ~~~~~Ea~a~G~PvI~~~~~~~~e~i~~--------~~~g~~~~~~d~~~l~~~i~~l~~----~~~~~~~~~~~~~~~~ 364 (406)
T 2gek_A 297 GIVLVEAMAAGTAVVASDLDAFRRVLAD--------GDAGRLVPVDDADGMAAALIGILE----DDQLRAGYVARASERV 364 (406)
T ss_dssp CHHHHHHHHHTCEEEECCCHHHHHHHTT--------TTSSEECCTTCHHHHHHHHHHHHH----CHHHHHHHHHHHHHHG
T ss_pred chHHHHHHHcCCCEEEecCCcHHHHhcC--------CCceEEeCCCCHHHHHHHHHHHHc----CHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 689999999999999999999999 99999888866654
Q ss_pred hcCCHHHHHHHHHHHHHHHhc
Q 043397 575 NDNSWNNAAGKYMEIYNSIRV 595 (596)
Q Consensus 575 ~~fs~~~~~~~~~~iy~~l~~ 595 (596)
.+|+|+.+++++.++|++++.
T Consensus 365 ~~~s~~~~~~~~~~~~~~~~~ 385 (406)
T 2gek_A 365 HRYDWSVVSAQIMRVYETVSG 385 (406)
T ss_dssp GGGBHHHHHHHHHHHHHHHCC
T ss_pred HhCCHHHHHHHHHHHHHHHHh
Confidence 589999999999999999874
No 12
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=3.6e-41 Score=352.58 Aligned_cols=366 Identities=15% Similarity=0.118 Sum_probs=269.5
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeC
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVS 188 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (596)
|||++++..++| .||.++++.+++++|.++||+|+|+++..... ...
T Consensus 1 MkIl~i~~~~~~---~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~------------------------------~~~ 47 (374)
T 2iw1_A 1 MIVAFCLYKYFP---FGGLQRDFMRIASTVAARGHHVRVYTQSWEGD------------------------------CPK 47 (374)
T ss_dssp -CEEEECSEECT---TCHHHHHHHHHHHHHHHTTCCEEEEESEECSC------------------------------CCT
T ss_pred CeEEEEEeecCC---CcchhhHHHHHHHHHHhCCCeEEEEecCCCCC------------------------------CCC
Confidence 899999988766 49999999999999999999999999642211 013
Q ss_pred CeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEE
Q 043397 189 SIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIV 268 (596)
Q Consensus 189 gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv 268 (596)
|+.++.++... . ....+...+...+.++++. .+||+||+|++..+....... .....+.+
T Consensus 48 ~~~v~~~~~~~-~-----------~~~~~~~~~~~~l~~~i~~--~~~Dvv~~~~~~~~~~~~~~~------~~~~~~~~ 107 (374)
T 2iw1_A 48 AFELIQVPVKS-H-----------TNHGRNAEYYAWVQNHLKE--HPADRVVGFNKMPGLDVYFAA------DVCYAEKV 107 (374)
T ss_dssp TCEEEECCCCC-S-----------SHHHHHHHHHHHHHHHHHH--SCCSEEEESSCCTTCSEEECC------SCCHHHHH
T ss_pred CcEEEEEccCc-c-----------cchhhHHHHHHHHHHHHhc--cCCCEEEEecCCCCceeeecc------ccccceee
Confidence 56666665211 1 0112233344455555554 589999999754322111100 01112223
Q ss_pred EEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhc--cccCeEEEeChhhHHHHhhcchhhh
Q 043397 269 LTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGI--VYSNAVVTVSPTYLKETLCSGWLAS 346 (596)
Q Consensus 269 ~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ad~vi~vS~~~~~~~~~~g~l~~ 346 (596)
++.|+.... .......+. .+.+..+ +.+|.++++|+..++.+..
T Consensus 108 ~~~~~~~~~----------~~~~~~~~~------------------~~~~~~~~~~~~d~ii~~s~~~~~~~~~------ 153 (374)
T 2iw1_A 108 AQEKGFLYR----------LTSRYRHYA------------------AFERATFEQGKSTKLMMLTDKQIADFQK------ 153 (374)
T ss_dssp HHHCCHHHH----------TSHHHHHHH------------------HHHHHHHSTTCCCEEEESCHHHHHHHHH------
T ss_pred eecccchhh----------hcHHHHHHH------------------HHHHHHhhccCCcEEEEcCHHHHHHHHH------
Confidence 233321100 000000010 1112222 3589999999998888643
Q ss_pred hhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHH
Q 043397 347 VLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITH 426 (596)
Q Consensus 347 ~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~ 426 (596)
.++.+..++.+||||+|.+.+.+... ...+..++++++++ ++.++++|+||+.+.||++.+++
T Consensus 154 ~~~~~~~~~~vi~ngv~~~~~~~~~~---------------~~~~~~~~~~~~~~--~~~~~i~~~G~~~~~K~~~~li~ 216 (374)
T 2iw1_A 154 HYQTEPERFQILPPGIYPDRKYSEQI---------------PNSREIYRQKNGIK--EQQNLLLQVGSDFGRKGVDRSIE 216 (374)
T ss_dssp HHCCCGGGEEECCCCCCGGGSGGGSC---------------TTHHHHHHHHTTCC--TTCEEEEEECSCTTTTTHHHHHH
T ss_pred HhCCChhheEEecCCcCHHhcCcccc---------------hhHHHHHHHHhCCC--CCCeEEEEeccchhhcCHHHHHH
Confidence 34455679999999999887765421 12345678889886 67889999999999999999999
Q ss_pred HHHHHHH---cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHH
Q 043397 427 AIKRAEE---LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIG 503 (596)
Q Consensus 427 A~~~l~~---~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEA 503 (596)
|+..+.+ ++++|+|+|+ |+ .+.++++++++++.++|+|+|..+ ++..+|+.||++++||.+|++|++++||
T Consensus 217 a~~~l~~~~~~~~~l~i~G~---g~-~~~~~~~~~~~~~~~~v~~~g~~~--~~~~~~~~ad~~v~ps~~e~~~~~~~Ea 290 (374)
T 2iw1_A 217 ALASLPESLRHNTLLFVVGQ---DK-PRKFEALAEKLGVRSNVHFFSGRN--DVSELMAAADLLLHPAYQEAAGIVLLEA 290 (374)
T ss_dssp HHHTSCHHHHHTEEEEEESS---SC-CHHHHHHHHHHTCGGGEEEESCCS--CHHHHHHHCSEEEECCSCCSSCHHHHHH
T ss_pred HHHHhHhccCCceEEEEEcC---CC-HHHHHHHHHHcCCCCcEEECCCcc--cHHHHHHhcCEEEeccccCCcccHHHHH
Confidence 9998854 4899999999 66 478899999999888999999854 4999999999999999999999999999
Q ss_pred HhcCCceEEeCCCCccccccccCCCCCCCccceEEEe-CCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--hcCCHH
Q 043397 504 MRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFE-GIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME--NDNSWN 580 (596)
Q Consensus 504 ma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~-~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~--~~fs~~ 580 (596)
|++|+|||+++.||..|++.+ +.+|++++ +.|+++++++|.++++ |++.++++++++.+ .+|+|+
T Consensus 291 ~a~G~Pvi~~~~~~~~e~i~~--------~~~g~~~~~~~~~~~l~~~i~~l~~----~~~~~~~~~~~~~~~~~~~~~~ 358 (374)
T 2iw1_A 291 ITAGLPVLTTAVCGYAHYIAD--------ANCGTVIAEPFSQEQLNEVLRKALT----QSPLRMAWAENARHYADTQDLY 358 (374)
T ss_dssp HHHTCCEEEETTSTTTHHHHH--------HTCEEEECSSCCHHHHHHHHHHHHH----CHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHCCCCEEEecCCCchhhhcc--------CCceEEeCCCCCHHHHHHHHHHHHc----ChHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999988 78999998 8899999999999999 99999999977665 678999
Q ss_pred HHHHHHHHHHHHHhcC
Q 043397 581 NAAGKYMEIYNSIRVG 596 (596)
Q Consensus 581 ~~~~~~~~iy~~l~~~ 596 (596)
.+++++.++++..+.|
T Consensus 359 ~~~~~~~~~l~~~l~g 374 (374)
T 2iw1_A 359 SLPEKAADIITGGLDG 374 (374)
T ss_dssp CHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHhhcC
Confidence 9999999999988765
No 13
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=4.6e-39 Score=341.86 Aligned_cols=355 Identities=18% Similarity=0.189 Sum_probs=262.3
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeC
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVS 188 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (596)
|||+++++.+ | ..||.++++..|+++|+++ |+|+|++...... ... .
T Consensus 1 MkI~~v~~~~-p--~~gG~~~~~~~l~~~L~~~-~~V~v~~~~~~g~--~~~---------------------------~ 47 (413)
T 3oy2_A 1 MKLIIVGAHS-S--VPSGYGRVMRAIVPRISKA-HEVIVFGIHAFGR--SVH---------------------------A 47 (413)
T ss_dssp CEEEEEEECT-T--CCSHHHHHHHHHHHHHTTT-SEEEEEEESCCSC--CSC---------------------------S
T ss_pred CeEEEecCCC-C--CCCCHHHHHHHHHHHHHhc-CCeEEEeecCCCc--ccc---------------------------c
Confidence 8999998765 5 4599999999999999999 9999998542210 000 0
Q ss_pred CeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEE
Q 043397 189 SIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIV 268 (596)
Q Consensus 189 gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv 268 (596)
....+..... .......... .+...+.+.++. .+|||||+|.|.....+.+ ...... ....+++
T Consensus 48 ~~~~~~~~~~-~~~~~~~~~~----------~~~~~l~~~l~~--~~~Div~~~~~~~~~~~~~-~~~~~~--~~~~~~~ 111 (413)
T 3oy2_A 48 NIEEFDAQTA-EHVRGLNEQG----------FYYSGLSEFIDV--HKPDIVMIYNDPIVIGNYL-LAMGKC--SHRTKIV 111 (413)
T ss_dssp SSEEEEHHHH-HHHTTCCSTT----------CCHHHHHHHHHH--HCCSEEEEEECHHHHHHHH-HHGGGC--CSCCEEE
T ss_pred ccccCCcccc-cccccccccc----------chHHHHHHHHHh--cCCCEEEEcchHHHHHHHH-HHhccC--CCCCcee
Confidence 0010000000 0000000000 011122333332 5899999996544433322 221110 1135667
Q ss_pred EEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccC--eEEEeChhhHHHHhhcchhhh
Q 043397 269 LTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSN--AVVTVSPTYLKETLCSGWLAS 346 (596)
Q Consensus 269 ~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad--~vi~vS~~~~~~~~~~g~l~~ 346 (596)
...|+...... ...+..++.+| .++++|+..++.+...|
T Consensus 112 ~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~ii~~S~~~~~~~~~~~---- 152 (413)
T 3oy2_A 112 LYVDLVSKNIR-----------------------------------ENLWWIFSHPKVVGVMAMSKCWISDICNYG---- 152 (413)
T ss_dssp EEECCCSBSCC-----------------------------------GGGGGGGGCTTEEEEEESSTHHHHHHHHTT----
T ss_pred eeccccchhhH-----------------------------------HHHHHHHhccCCceEEEcCHHHHHHHHHcC----
Confidence 77775543110 00233456677 99999999999976543
Q ss_pred hhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHH
Q 043397 347 VLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITH 426 (596)
Q Consensus 347 ~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~ 426 (596)
. ..++.+||||+|.+.+. ..++.++++.+.+.++|+|+||+.++||++.+++
T Consensus 153 ---~-~~~~~vi~ngvd~~~~~------------------------~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~ 204 (413)
T 3oy2_A 153 ---C-KVPINIVSHFVDTKTIY------------------------DARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVL 204 (413)
T ss_dssp ---C-CSCEEECCCCCCCCCCT------------------------THHHHTTCGGGTTSEEEECCSCSSGGGTHHHHHH
T ss_pred ---C-CCceEEeCCCCCHHHHH------------------------HHHHhcCCCcccCceEEEEcCCCchhcCcHHHHH
Confidence 2 57999999999987761 2345667752237899999999999999999999
Q ss_pred HHHHHHH--cCCEEEEEecCCCCcch------HHHHHHHHHcCCCCc-------EEEEeccCHHHHHHHHHhCCEEEEcC
Q 043397 427 AIKRAEE--LGGQMILLGNSPVHWVQ------KDFEDLANLHNKGTS-------TRILLMYSEELSHMLYAAADIVLVPS 491 (596)
Q Consensus 427 A~~~l~~--~~~~lvIvG~~~~g~~~------~~l~~~~~~~~~~~~-------V~~~g~~~~~~l~~~~a~aDi~l~PS 491 (596)
|+.++.+ ++++|+|+|+ |+.. +.++++++++++.++ |.+.|+++++++..+|++||++|+||
T Consensus 205 a~~~l~~~~~~~~l~ivG~---g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS 281 (413)
T 3oy2_A 205 AAARFISKYPDAKVRFLCN---SHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCS 281 (413)
T ss_dssp HHHHHHHHCTTCCEEEEEE---CCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHHCSEEEECC
T ss_pred HHHHHHHhCCCcEEEEEeC---CcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHhCCEEEeCC
Confidence 9999865 6899999999 6543 889999999999887 88889999999999999999999999
Q ss_pred CCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccc---------------eE--EEeCCCHHHHHHHHHHH
Q 043397 492 IYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKAN---------------GF--VFEGIDEGSLNWALDRA 554 (596)
Q Consensus 492 ~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~---------------G~--lv~~~d~~~la~~i~~l 554 (596)
.+|+||++++|||+||+|||+++.||++|++.+ +.+ |+ ++++.|+++|+++| ++
T Consensus 282 ~~E~~~~~~lEAma~G~PvI~s~~~g~~e~v~~--------~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l 352 (413)
T 3oy2_A 282 SGEGFGLCSAEGAVLGKPLIISAVGGADDYFSG--------DCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TF 352 (413)
T ss_dssp SCCSSCHHHHHHHTTTCCEEEECCHHHHHHSCT--------TTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HH
T ss_pred CcCCCCcHHHHHHHcCCCEEEcCCCChHHHHcc--------CcccccccccccccccccCcceeeCCCCHHHHHHHH-HH
Confidence 999999999999999999999999999999987 455 99 99999999999999 99
Q ss_pred HHhccCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHhc
Q 043397 555 FRHFIDKPEEWNRIVQKIME---NDNSWNNAAGKYMEIYNSIRV 595 (596)
Q Consensus 555 l~~~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~iy~~l~~ 595 (596)
++ |++.+.+|++++.+ ++|||+.++++|+++|++++.
T Consensus 353 ~~----~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 392 (413)
T 3oy2_A 353 FK----DEKNRKEYGKRVQDFVKTKPTWDDISSDIIDFFNSLLR 392 (413)
T ss_dssp TT----SHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTC
T ss_pred hc----CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 98 99999999877665 689999999999999999874
No 14
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=3.1e-39 Score=334.44 Aligned_cols=314 Identities=17% Similarity=0.155 Sum_probs=249.2
Q ss_pred ceeEEEEeec--------c---cccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCc
Q 043397 108 LMHIIHITAE--------M---APIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGN 176 (596)
Q Consensus 108 ~mkIl~is~~--------~---~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (596)
+|||++++.. + +|. ..||.++++..++++|.++||+|+++++......
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~-~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~-------------------- 61 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQ-GYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAG-------------------- 61 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCS-SSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCC--------------------
T ss_pred ccEEEEEeccccccCcccccccCcc-cCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCC--------------------
Confidence 5999999988 3 342 4599999999999999999999999996533221
Q ss_pred eEEEEEEeeeeCCeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHH
Q 043397 177 WVATNAYHGVVSSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDM 256 (596)
Q Consensus 177 ~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~ 256 (596)
..++.++... . + ..+.++++. .+|||||+|.+......
T Consensus 62 ----------~~~~~~~~~~--------------~------~----~~l~~~l~~--~~~Dvi~~~~~~~~~~~------ 99 (342)
T 2iuy_A 62 ----------RPGLTVVPAG--------------E------P----EEIERWLRT--ADVDVVHDHSGGVIGPA------ 99 (342)
T ss_dssp ----------STTEEECSCC--------------S------H----HHHHHHHHH--CCCSEEEECSSSSSCST------
T ss_pred ----------CCcceeccCC--------------c------H----HHHHHHHHh--cCCCEEEECCchhhHHH------
Confidence 1233332111 0 0 133344443 58999999986654332
Q ss_pred hhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHH
Q 043397 257 YQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLK 336 (596)
Q Consensus 257 ~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~ 336 (596)
.+..++| |+++|+..... ..+|.++++|+..++
T Consensus 100 ---~~~~~~p-v~~~h~~~~~~-------------------------------------------~~~d~ii~~S~~~~~ 132 (342)
T 2iuy_A 100 ---GLPPGTA-FISSHHFTTRP-------------------------------------------VNPVGCTYSSRAQRA 132 (342)
T ss_dssp ---TCCTTCE-EEEEECSSSBC-------------------------------------------SCCTTEEESCHHHHH
T ss_pred ---HhhcCCC-EEEecCCCCCc-------------------------------------------ccceEEEEcCHHHHH
Confidence 1146889 99999876410 017899999998888
Q ss_pred HHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEeccc
Q 043397 337 ETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLV 416 (596)
Q Consensus 337 ~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~ 416 (596)
.+.. ..++.+||||+|.+.+.+... .. ++.++|+|+||+.
T Consensus 133 ~~~~-----------~~~~~vi~ngvd~~~~~~~~~--------------------------~~---~~~~~i~~vG~~~ 172 (342)
T 2iuy_A 133 HCGG-----------GDDAPVIPIPVDPARYRSAAD--------------------------QV---AKEDFLLFMGRVS 172 (342)
T ss_dssp HTTC-----------CTTSCBCCCCBCGGGSCCSTT--------------------------CC---CCCSCEEEESCCC
T ss_pred HHhc-----------CCceEEEcCCCChhhcCcccc--------------------------cC---CCCCEEEEEeccc
Confidence 8532 578999999999887765421 01 3567899999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCC----
Q 043397 417 AQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSI---- 492 (596)
Q Consensus 417 ~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~---- 492 (596)
+.||++.+++|++.+ +++|+|+|+ |+..+.+++++++++ ++|+|+|+++++++..+|++||++++||.
T Consensus 173 ~~Kg~~~li~a~~~~---~~~l~i~G~---g~~~~~l~~~~~~~~--~~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~ 244 (342)
T 2iuy_A 173 PHKGALEAAAFAHAC---GRRLVLAGP---AWEPEYFDEITRRYG--STVEPIGEVGGERRLDLLASAHAVLAMSQAVTG 244 (342)
T ss_dssp GGGTHHHHHHHHHHH---TCCEEEESC---CCCHHHHHHHHHHHT--TTEEECCCCCHHHHHHHHHHCSEEEECCCCCCC
T ss_pred cccCHHHHHHHHHhc---CcEEEEEeC---cccHHHHHHHHHHhC--CCEEEeccCCHHHHHHHHHhCCEEEECCccccc
Confidence 999999999999987 899999999 888999999999887 68999999999999999999999999999
Q ss_pred ------CCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHH
Q 043397 493 ------YEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWN 566 (596)
Q Consensus 493 ------~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~ 566 (596)
.|+||++++|||++|+|||+++.||+.|++.+. ++.+|+++++ |+++++++|.++++ .
T Consensus 245 ~~~~~~~E~~~~~~~EAma~G~PvI~s~~~~~~e~~~~~------~~~~g~~~~~-d~~~l~~~i~~l~~---------~ 308 (342)
T 2iuy_A 245 PWGGIWCEPGATVVSEAAVSGTPVVGTGNGCLAEIVPSV------GEVVGYGTDF-APDEARRTLAGLPA---------S 308 (342)
T ss_dssp TTCSCCCCCCCHHHHHHHHTTCCEEECCTTTHHHHGGGG------EEECCSSSCC-CHHHHHHHHHTSCC---------H
T ss_pred ccccccccCccHHHHHHHhcCCCEEEcCCCChHHHhccc------CCCceEEcCC-CHHHHHHHHHHHHH---------H
Confidence 799999999999999999999999999999650 0258999999 99999999998873 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 043397 567 RIVQKIMENDNSWNNAAGKYMEIYNSIRV 595 (596)
Q Consensus 567 ~~~~~~~~~~fs~~~~~~~~~~iy~~l~~ 595 (596)
+.+++.++++|||+.++++|.++|++++.
T Consensus 309 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 337 (342)
T 2iuy_A 309 DEVRRAAVRLWGHVTIAERYVEQYRRLLA 337 (342)
T ss_dssp HHHHHHHHHHHBHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHc
Confidence 23444455689999999999999999875
No 15
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=100.00 E-value=5.9e-38 Score=338.04 Aligned_cols=446 Identities=13% Similarity=0.096 Sum_probs=295.6
Q ss_pred EEEEeecccccccccCHHHHHhHHHHHHHhc-CCeEEEEeccccchhhhhhccccee-ee--------EE-----eecCC
Q 043397 111 IIHITAEMAPIAKVGGLGDVVTGLARACLSR-GHTVDIMLPFYECIQKQEISDLALI-TT--------YN-----SYHDG 175 (596)
Q Consensus 111 Il~is~~~~P~~~~GG~~~~~~~La~aL~~~-Gh~V~vi~p~~~~~~~~~~~~~~~~-~~--------~~-----~~~~~ 175 (596)
+.=++++-.. ++||+-+++..-|..+.+. |-+..++.|........+.+..... .. +. ....+
T Consensus 30 lfE~swEV~N--kVGGIyTVl~tka~~~~~~~gd~y~~iGP~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~G 107 (725)
T 3nb0_A 30 LFETATEVAN--RVGGIYSVLKSKAPITVAQYKDHYHLIGPLNKATYQNEVDILDWKKPEAFSDEMRPVQHALQTMESRG 107 (725)
T ss_dssp EEEEETTTTS--CSSHHHHHHHHHHHHHHHHHGGGEEEEEECCTTTHHHHEEECCSSSGGGSCSTTHHHHHHHHHHHTTT
T ss_pred EEeeehhhhc--ccCCeEEEEecchhHHHHHhCCeEEEECCCCCCcCCcceeecCCCCchhhcchhHHHHHHHHHHHHCC
Confidence 4557777777 8999999999988888875 8899999986433322222211100 00 01 01223
Q ss_pred ceEEEEEEeeeeCCeEEEEEcCCccccCC--------------Ccc-cCCChhhHHHHHHHHHHHHHHHHhhC-CCCcEE
Q 043397 176 NWVATNAYHGVVSSIPVIFIEPSNQFFKG--------------KNV-YGGSYNELEAYLFFSRACLEWMQVTG-VQPDII 239 (596)
Q Consensus 176 ~~~~~~~~~~~~~gv~v~~~~~~~~~~~~--------------~~~-y~~~~~~~~~~~~f~~~~~~~l~~~~-~~pDVI 239 (596)
-.+.++. ..+.|.|++.+-.-..++.. .++ ..+.+++.++|.+|+.++++.+.... ..|||+
T Consensus 108 ~~v~~Gr--W~i~G~P~viL~d~~~~~~~~~~~~~~lw~~~~i~s~~~yg~~dd~~~F~y~~~avl~~l~~~~~~~pdIi 185 (725)
T 3nb0_A 108 VHFVYGR--WLIEGAPKVILFDLDSVRGYSNEWKGDLWSLVGIPSPENDFETNDAILLGYTVAWFLGEVAHLDSQHAIVA 185 (725)
T ss_dssp CCEEEEE--ESSTTCCEEEEECSGGGGGGHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred CeEEEEE--EecCCCceEEEEeChHHHHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 3344443 35778777665422221111 111 11245788899999999988887665 679999
Q ss_pred EEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCC------CCcch-hhhhhhcCCCchhhhhhhhhccccccCCCcc
Q 043397 240 HVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEH------YGECR-QEQLSKCGLDGSIYASVEKAIDDRTIGHNPE 312 (596)
Q Consensus 240 h~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (596)
|+|+|+++.++.+++.. ..++|+|+|+|+... ++.+. ...+...+....... + ....
T Consensus 186 H~HDW~tg~~~~~Lk~~-----~~~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~--------~---~i~~ 249 (725)
T 3nb0_A 186 HFHEWLAGVALPLCRKR-----RIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGR--------F---GIYH 249 (725)
T ss_dssp EEESGGGCTHHHHHHHT-----TCSCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHH--------T---TCHH
T ss_pred EeCchhhhHHHHHHHHh-----CCCCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhh--------h---chhH
Confidence 99999999999988754 568999999999742 12111 000111111111000 0 1124
Q ss_pred cchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHH
Q 043397 313 RLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKY 392 (596)
Q Consensus 313 ~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~ 392 (596)
..++++.++.+||.|+|||+.+++|+.. ++..+.+.+ ||||||...|+|... ..+.+..+|.
T Consensus 250 ~~~~EKaga~~AD~ITTVS~~yA~Ei~~------Ll~r~~d~i--IpNGID~~~f~p~~~----------~~~~k~~aK~ 311 (725)
T 3nb0_A 250 RYCIERAAAHSADVFTTVSQITAFEAEH------LLKRKPDGI--LPNGLNVIKFQAFHE----------FQNLHALKKE 311 (725)
T ss_dssp HHHHHHHHHHHSSEEEESSHHHHHHHHH------HTSSCCSEE--CCCCBCCCCCSSTTH----------HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEECCHHHHHHHHH------HhcCCCCEE--EcCCccccccCcchh----------hHHHHHHHHH
Confidence 6788999999999999999999999753 344555544 999999999988511 1123445566
Q ss_pred HHHhhc------CCCCCCCc-cEEEEEeccc-ccCCHHHHHHHHHHHHHc---------CCEEEEEecCCCCc-------
Q 043397 393 YIQKGL------GLKSEGTV-PLVVCITRLV-AQKGLHLITHAIKRAEEL---------GGQMILLGNSPVHW------- 448 (596)
Q Consensus 393 ~~~~~l------~l~~~~~~-~~il~iGrl~-~~KGi~~ll~A~~~l~~~---------~~~lvIvG~~~~g~------- 448 (596)
.+++.+ +++.+.++ ++|..+||++ .+||+|++++|+.++... -+.|+|+.....+.
T Consensus 312 klq~~l~~~~~~~l~l~~dk~liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~ 391 (725)
T 3nb0_A 312 KINDFVRGHFHGCFDFDLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKG 391 (725)
T ss_dssp HHHHHHHHHTTTCCCSCGGGEEEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHH
T ss_pred HHHHHHHhhcccCCCCCCCceeEEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcc
Confidence 665433 33322344 5556689999 789999999999998641 24677775411110
Q ss_pred -------------------------------------------------------------------------------c
Q 043397 449 -------------------------------------------------------------------------------V 449 (596)
Q Consensus 449 -------------------------------------------------------------------------------~ 449 (596)
.
T Consensus 392 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~ 471 (725)
T 3nb0_A 392 QAEVRALENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDA 471 (725)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGG
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCC
Confidence 1
Q ss_pred hHHHHHHHHHcCCCCc------EEEE-eccCHH------HHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCC
Q 043397 450 QKDFEDLANLHNKGTS------TRIL-LMYSEE------LSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTG 516 (596)
Q Consensus 450 ~~~l~~~~~~~~~~~~------V~~~-g~~~~~------~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~g 516 (596)
.+.+...++++++.++ |+|+ ++++.. ++..+|++||++|+||.+|+||++++||||||+|||++++|
T Consensus 472 ~D~Il~~~r~l~L~N~~~drVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~g 551 (725)
T 3nb0_A 472 NDLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVS 551 (725)
T ss_dssp GCHHHHHHHHHTCCCCTTCSEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEETTB
T ss_pred ccHHHHHHHhcCCCCCcCCceeEEEeccccCCCCccchhHHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEEeCCC
Confidence 1122333345555444 5666 667665 48999999999999999999999999999999999999999
Q ss_pred CccccccccCCCCCCCccceEEEe---CCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 043397 517 GLADTVFDVDDPSNHEKANGFVFE---GIDEGSLNWALDRAFRHFI-DKPEEWNRIVQKIME--NDNSWNNAAGKYMEIY 590 (596)
Q Consensus 517 g~~e~i~~~~~~~~~~~~~G~lv~---~~d~~~la~~i~~ll~~~~-~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~iy 590 (596)
|+.|+|.++... ...+.+|+++. +.|+++++++|.+++..+. .++..+.+|++++.+ ++|||++++++|+++|
T Consensus 552 G~~d~V~dg~~~-~~~~~tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A~~FSWe~iA~~Yl~~Y 630 (725)
T 3nb0_A 552 GFGSYMEDLIET-NQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALSDLLDWKRMGLEYVKAR 630 (725)
T ss_dssp HHHHHHHTTSCH-HHHHHTTEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGGGGGBHHHHHHHHHHHH
T ss_pred Chhhhhhccccc-cCCCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999873100 00014799884 4577888888877775443 367777888876644 7899999999999999
Q ss_pred HHHhc
Q 043397 591 NSIRV 595 (596)
Q Consensus 591 ~~l~~ 595 (596)
++++.
T Consensus 631 e~aL~ 635 (725)
T 3nb0_A 631 QLALR 635 (725)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98863
No 16
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=100.00 E-value=1.8e-35 Score=313.85 Aligned_cols=357 Identities=13% Similarity=0.065 Sum_probs=233.6
Q ss_pred CCCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEe
Q 043397 105 DSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYH 184 (596)
Q Consensus 105 ~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (596)
..++|||++++..+.|....||. ..+.+++++|+++||+|+|+++..... ........... + .+...
T Consensus 43 ~~~~mrI~~v~~~~~p~~~~GG~-~~v~~la~~L~~~GheV~Vvt~~~~~~-~~~~~~~~~~~-~-~~~~~--------- 109 (413)
T 2x0d_A 43 SIKGKRLNLLVPSINQEHMFGGI-STALKLFEQFDNKKFKKRIILTDATPN-PKDLQSFKSFK-Y-VMPEE--------- 109 (413)
T ss_dssp CCCSCEEEEEESCCCGGGCSHHH-HHHHHHHTTSCTTTCEEEEEESSCCCC-HHHHGGGTTSE-E-CCTTC---------
T ss_pred CCCCceEEEEeCCCCccccccHH-HHHHHHHHHHHHcCCceEEEEecCCCC-hHHHHhhhccc-e-eeccC---------
Confidence 34679999999999884224665 568899999999999999999764221 11111110000 0 00000
Q ss_pred eeeCC--eEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHh-hhcc
Q 043397 185 GVVSS--IPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMY-QSLS 261 (596)
Q Consensus 185 ~~~~g--v~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~-~~~~ 261 (596)
... ..+..+.. . +.. .+. ..++|+||++.|.++.....+.... ....
T Consensus 110 --~~~~~~~i~~~~~--~-~~~-----------------------~~~--~~~~Dvv~a~~~~~~~~~~~~~~~~~~~~~ 159 (413)
T 2x0d_A 110 --DKDFALQIVPFND--R-YNR-----------------------TIP--VAKHDIFIATAWWTAYAAQRIVSWQSDTYG 159 (413)
T ss_dssp --CCCCSEEEEECSC--C-TTC-----------------------CEE--ECTTEEEEECSHHHHHHHHHHHHHHHHHHT
T ss_pred --Cccccceeeeccc--c-ccc-----------------------ccc--CCCCCEEEEehHHHHHHHHHhhhhhhhhcc
Confidence 000 01111000 0 000 000 1479999999877655443331111 1111
Q ss_pred CCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccC--eEEEeChhhHHHHh
Q 043397 262 LKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSN--AVVTVSPTYLKETL 339 (596)
Q Consensus 262 ~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad--~vi~vS~~~~~~~~ 339 (596)
..+.|.++.+|+..+... ... ..+ .+.+..+..++ .++++|+..++.+.
T Consensus 160 ~~~~~~~~~v~~~~~~~~---------~~~-~~~-------------------~~~~~~~~~~~~~~vi~~S~~~~~~l~ 210 (413)
T 2x0d_A 160 IPPNKILYIIQDFEPGFY---------QWS-SQY-------------------VLAESTYKYRGPQIAVFNSELLKQYFN 210 (413)
T ss_dssp CCCCCEEEEECSCGGGGS---------CSS-HHH-------------------HHHHHTTSCCSCEEEEEESHHHHHHHH
T ss_pred cccCcEEEEEeechhhcC---------ccC-hHH-------------------HHHHHHhccCCceEEEEcCHHHHHHHH
Confidence 246688888887653100 000 000 01122233344 58999999999976
Q ss_pred hcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecc-ccc
Q 043397 340 CSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRL-VAQ 418 (596)
Q Consensus 340 ~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl-~~~ 418 (596)
+.| .+..++.+++||+|.+.|.+.. .+. ++.+.++++||+ .+.
T Consensus 211 ~~g-------~~~~~~~~i~~g~d~~~~~~~~--------------------------~~~---~~~~~il~~gr~~~~~ 254 (413)
T 2x0d_A 211 NKG-------YNFTDEYFFQPKINTTLKNYIN--------------------------DKR---QKEKIILVYGRPSVKR 254 (413)
T ss_dssp HHT-------CCCSEEEEECCCCCHHHHTTTT--------------------------SCC---CCCSEEEEEECTTCGG
T ss_pred HcC-------CCCCceEEeCCCcCchhhcccc--------------------------ccc---CCCCEEEEEecCchhc
Confidence 554 2235789999999976443220 011 456788999997 689
Q ss_pred CCHHHHHHHHHHHHH--c---CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCC
Q 043397 419 KGLHLITHAIKRAEE--L---GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIY 493 (596)
Q Consensus 419 KGi~~ll~A~~~l~~--~---~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~ 493 (596)
||++.+++|++.+.+ + +++|+|+|+ |... .++++.++|+|+|.++++++..+|++||++++||..
T Consensus 255 Kg~~~li~A~~~l~~~~~~~~~~~l~ivG~---~~~~-------~~l~~~~~v~f~G~~~~~~l~~~~~~adv~v~pS~~ 324 (413)
T 2x0d_A 255 NAFTLIVEALKIFVQKYDRSNEWKIISVGE---KHKD-------IALGKGIHLNSLGKLTLEDYADLLKRSSIGISLMIS 324 (413)
T ss_dssp GCHHHHHHHHHHHHHHCTTGGGCEEEEEES---CCCC-------EEEETTEEEEEEESCCHHHHHHHHHHCCEEECCCSS
T ss_pred cCHHHHHHHHHHHHHhCCCCCceEEEEEcC---Cchh-------hhcCCcCcEEEcCCCCHHHHHHHHHhCCEEEEecCC
Confidence 999999999999865 3 389999998 6543 346667789999999999999999999999999999
Q ss_pred CCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 043397 494 EPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIM 573 (596)
Q Consensus 494 E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~ 573 (596)
|+||++++||||||+|||++ .+|..|++.+ +.+|+++++.|+++|+++|.++++ |++++++ ..+..
T Consensus 325 E~~g~~~lEAmA~G~PVV~~-~~g~~e~v~~--------~~~G~lv~~~d~~~la~ai~~ll~----~~~~~~~-~~~~~ 390 (413)
T 2x0d_A 325 PHPSYPPLEMAHFGLRVITN-KYENKDLSNW--------HSNIVSLEQLNPENIAETLVELCM----SFNNRDV-DKKES 390 (413)
T ss_dssp SSCCSHHHHHHHTTCEEEEE-CBTTBCGGGT--------BTTEEEESSCSHHHHHHHHHHHHH----HTC--------CC
T ss_pred CCCCcHHHHHHhCCCcEEEe-CCCcchhhhc--------CCCEEEeCCCCHHHHHHHHHHHHc----CHHHHHH-hHHHH
Confidence 99999999999999999995 5678899988 789999999999999999999998 6666555 21111
Q ss_pred HhcCCHHHHHHHHHHHHHHHh
Q 043397 574 ENDNSWNNAAGKYMEIYNSIR 594 (596)
Q Consensus 574 ~~~fs~~~~~~~~~~iy~~l~ 594 (596)
...|||+.++++ .++|+++.
T Consensus 391 ~~~~~W~~~~~~-~~~~~~l~ 410 (413)
T 2x0d_A 391 SNMMFYINEFNE-FSFIKEIE 410 (413)
T ss_dssp BSCGGGCCCC----TTHHHHH
T ss_pred HHhCCHHHHHHH-HHHHHHHH
Confidence 258999999877 77777664
No 17
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=100.00 E-value=2.5e-33 Score=297.14 Aligned_cols=200 Identities=12% Similarity=0.110 Sum_probs=163.6
Q ss_pred hhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHH
Q 043397 316 LLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQ 395 (596)
Q Consensus 316 ~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~ 395 (596)
+++..++.+|.|+++|+..++.+... . ++.+||||+|.+.|.+....
T Consensus 171 ~~~~~~~~ad~vi~~S~~~~~~~~~~----------~-~i~vipngvd~~~f~~~~~~---------------------- 217 (406)
T 2hy7_A 171 EFDRVAPTLDVIALVSPAMAAEVVSR----------D-NVFHVGHGVDHNLDQLGDPS---------------------- 217 (406)
T ss_dssp HHHHHGGGCSEEEESCGGGGGGCSCS----------T-TEEECCCCBCTTHHHHHCSC----------------------
T ss_pred HHHHHHHhCCEEEEcCHHHHHHHHhc----------C-CEEEEcCCcChHhcCccccc----------------------
Confidence 34556788999999999888875321 1 89999999998776432100
Q ss_pred hhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHH
Q 043397 396 KGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEE 475 (596)
Q Consensus 396 ~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~ 475 (596)
+ ..+.++|+|+||+.+.||+ ++++.+. .++++|+|+|+ |+ ++++++.++|+|+|.++++
T Consensus 218 -----~-~~~~~~i~~vGrl~~~Kg~---~~~l~~~-~~~~~l~ivG~---g~--------~~~~~l~~~V~f~G~~~~~ 276 (406)
T 2hy7_A 218 -----P-YAEGIHAVAVGSMLFDPEF---FVVASKA-FPQVTFHVIGS---GM--------GRHPGYGDNVIVYGEMKHA 276 (406)
T ss_dssp -----S-CCSSEEEEEECCTTBCHHH---HHHHHHH-CTTEEEEEESC---SS--------CCCTTCCTTEEEECCCCHH
T ss_pred -----c-cCCCcEEEEEeccccccCH---HHHHHHh-CCCeEEEEEeC---ch--------HHhcCCCCCEEEcCCCCHH
Confidence 1 0234789999999999999 4444322 26899999998 76 5667788899999999999
Q ss_pred HHHHHHHhCCEEEEcCCCCCCchHHHHHH-------hcCCceEEeCCCCccccccccCCCCCCCccceEE-EeCCCHHHH
Q 043397 476 LSHMLYAAADIVLVPSIYEPCGLAQMIGM-------RYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFV-FEGIDEGSL 547 (596)
Q Consensus 476 ~l~~~~a~aDi~l~PS~~E~~gl~~lEAm-------a~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~l-v~~~d~~~l 547 (596)
++..+|++||++++||..|++|++++||| |||+|||+++. +.+ +.+|++ ++++|+++|
T Consensus 277 ~l~~~~~~adv~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~------v~~--------~~~G~l~v~~~d~~~l 342 (406)
T 2hy7_A 277 QTIGYIKHARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA------VVG--------PYKSRFGYTPGNADSV 342 (406)
T ss_dssp HHHHHHHTCSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG------GTC--------SCSSEEEECTTCHHHH
T ss_pred HHHHHHHhcCEEEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh------ccc--------CcceEEEeCCCCHHHH
Confidence 99999999999999999999999999999 99999999987 555 578999 999999999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH--HHHHh
Q 043397 548 NWALDRAFRHFIDKPEEWNRIVQKIMENDNSWNNAAGKYMEI--YNSIR 594 (596)
Q Consensus 548 a~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~i--y~~l~ 594 (596)
+++|.++++ +++ . ...++|||+.++++++++ |+++.
T Consensus 343 a~ai~~ll~----~~~------~-~~~~~~sw~~~a~~~~~~~~y~~~~ 380 (406)
T 2hy7_A 343 IAAITQALE----APR------V-RYRQCLNWSDTTDRVLDPRAYPETR 380 (406)
T ss_dssp HHHHHHHHH----CCC------C-CCSCCCBHHHHHHHHHCGGGSGGGB
T ss_pred HHHHHHHHh----Ccc------h-hhhhcCCHHHHHHHHHHhhcccccC
Confidence 999999998 655 1 223689999999999999 88754
No 18
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.98 E-value=1.6e-30 Score=287.81 Aligned_cols=333 Identities=10% Similarity=0.032 Sum_probs=240.2
Q ss_pred CCCceeEEEEeecccccccccCHHHHHhHHHHH--HHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEE
Q 043397 105 DSNLMHIIHITAEMAPIAKVGGLGDVVTGLARA--CLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNA 182 (596)
Q Consensus 105 ~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~a--L~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (596)
..++|||++++..+.+ ||++.++..+++. +.+.||+|+++++........ ...+.
T Consensus 202 ~~~~~rI~~~~~~~~~----~g~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~-~~~~~------------------ 258 (568)
T 2vsy_A 202 SKGPLRVGFVSNGFGA----HPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTL-RTRLA------------------ 258 (568)
T ss_dssp SSSCEEEEEEESCSSS----SHHHHHHHHHHHHHHHHCTTEEEEEEESSCCCSCHH-HHHHH------------------
T ss_pred CCCCeEEEEECccccc----ChHHHHHHHHHhhccCCcccEEEEEEECCCCCccHH-HHHHH------------------
Confidence 4567999999988744 7899999999999 788899999998643211000 00000
Q ss_pred EeeeeCCeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCcc--chHHHHHHHHhhhc
Q 043397 183 YHGVVSSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQI--GALPLLYWDMYQSL 260 (596)
Q Consensus 183 ~~~~~~gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~--~~~~~~~~~~~~~~ 260 (596)
..+ .++.+.. . . ...+.+.++. .+|||||.++.++ ..++.+.
T Consensus 259 ----~~~-~~~~~~~---~---------~----------~~~l~~~i~~--~~~Div~~~~~~~~~~~~~~~~------- 302 (568)
T 2vsy_A 259 ----QAS-TLHDVTA---L---------G----------HLATAKHIRH--HGIDLLFDLRGWGGGGRPEVFA------- 302 (568)
T ss_dssp ----HTS-EEEECTT---C---------C----------HHHHHHHHHH--TTCSEEEECSSCTTCSSCHHHH-------
T ss_pred ----hcC-eEEECCC---C---------C----------HHHHHHHHHh--CCCCEEEECCCCCCcchHHHHh-------
Confidence 011 1111110 0 0 1223344443 6899999876443 2222221
Q ss_pred cCCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhh
Q 043397 261 SLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLC 340 (596)
Q Consensus 261 ~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~ 340 (596)
....|++++.|...... +.. .+ .+..+|.++++|+...+
T Consensus 303 -~~~~~~~~~~~~~~~~~----------~~~---------~~-----------------~~~~~d~~i~~s~~~~~---- 341 (568)
T 2vsy_A 303 -LRPAPVQVNWLAYPGTS----------GAP---------WM-----------------DYVLGDAFALPPALEPF---- 341 (568)
T ss_dssp -TCCSSEEEEESSSSSCC----------CCT---------TC-----------------CEEEECTTTSCTTTGGG----
T ss_pred -cCCCceeEeeecCCccc----------CCC---------Cc-----------------eEEEECCCcCCcccccC----
Confidence 23568888888542110 000 00 01237888899974332
Q ss_pred cchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCC
Q 043397 341 SGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKG 420 (596)
Q Consensus 341 ~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KG 420 (596)
+ .+++.+|||.++.....+... +...++++|++ +..+++++||+.+ ||
T Consensus 342 -------~---~~~i~~ipn~~~~~~~~~~~~------------------~~~~r~~~~~~---~~~~v~~~g~~~~-K~ 389 (568)
T 2vsy_A 342 -------Y---SEHVLRLQGAFQPSDTSRVVA------------------EPPSRTQCGLP---EQGVVLCCFNNSY-KL 389 (568)
T ss_dssp -------C---SSEEEECSSCSCCCCTTCCCC------------------CCCCTGGGTCC---TTSCEEEECCCGG-GC
T ss_pred -------C---cceeEcCCCcCCCCCCCCCCC------------------CCCCccccCCC---CCCEEEEeCCccc-cC
Confidence 1 378999999543321111000 11245677874 4455669999999 99
Q ss_pred HHHHHHHHHHHHH--cCCEEEEEe-cCCCCcchHHHHHHHHHcCCC-CcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCC
Q 043397 421 LHLITHAIKRAEE--LGGQMILLG-NSPVHWVQKDFEDLANLHNKG-TSTRILLMYSEELSHMLYAAADIVLVPSIYEPC 496 (596)
Q Consensus 421 i~~ll~A~~~l~~--~~~~lvIvG-~~~~g~~~~~l~~~~~~~~~~-~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~ 496 (596)
++.+++|+.++.+ ++++|+|+| + |+..+.++++++++++. ++|+|+|+++++++..+|+.||++|+||.+ ++
T Consensus 390 ~~~li~a~~~l~~~~~~~~l~i~G~~---g~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~-~~ 465 (568)
T 2vsy_A 390 NPQSMARMLAVLREVPDSVLWLLSGP---GEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPY-NA 465 (568)
T ss_dssp CHHHHHHHHHHHHHCTTCEEEEECCS---TTHHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECCSSS-CC
T ss_pred CHHHHHHHHHHHHhCCCcEEEEecCC---HHHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcCCEEeeCCCC-CC
Confidence 9999999999865 689999999 6 88899999999999998 899999999999999999999999999999 99
Q ss_pred chHHHHHHhcCCceEE-------eCCC-------CccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCH
Q 043397 497 GLAQMIGMRYGAVPVV-------RKTG-------GLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKP 562 (596)
Q Consensus 497 gl~~lEAma~G~pvI~-------s~~g-------g~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~ 562 (596)
|++++|||+||+|||+ +++| |++|+|.+ |+++++++|.++++ |+
T Consensus 466 g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~~------------------~~~~la~~i~~l~~----~~ 523 (568)
T 2vsy_A 466 HTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNVA------------------DDAAFVAKAVALAS----DP 523 (568)
T ss_dssp SHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBCS------------------SHHHHHHHHHHHHH----CH
T ss_pred cHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCChhhhcC------------------CHHHHHHHHHHHhc----CH
Confidence 9999999999999999 9999 99998843 89999999999999 99
Q ss_pred HHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHHhc
Q 043397 563 EEWNRIVQKIME-----NDNSWNNAAGKYMEIYNSIRV 595 (596)
Q Consensus 563 ~~~~~~~~~~~~-----~~fs~~~~~~~~~~iy~~l~~ 595 (596)
+.+.+|++++.+ ..|||+.+++++.++|++++.
T Consensus 524 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~~~ 561 (568)
T 2vsy_A 524 AALTALHARVDVLRRASGVFHMDGFADDFGALLQALAR 561 (568)
T ss_dssp HHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999865443 579999999999999998864
No 19
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.97 E-value=1.3e-30 Score=271.87 Aligned_cols=338 Identities=12% Similarity=-0.015 Sum_probs=233.0
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeeeeC
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVS 188 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (596)
|||++++. ..||....+..|+++|.++||+|+++++..... ..... ..
T Consensus 7 mkIl~~~~------~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~-~~~~~-------------------------~~ 54 (364)
T 1f0k_A 7 KRLMVMAG------GTGGHVFPGLAVAHHLMAQGWQVRWLGTADRME-ADLVP-------------------------KH 54 (364)
T ss_dssp CEEEEECC------SSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTH-HHHGG-------------------------GG
T ss_pred cEEEEEeC------CCccchhHHHHHHHHHHHcCCEEEEEecCCcch-hhhcc-------------------------cc
Confidence 89999972 347888889999999999999999999654221 11110 13
Q ss_pred CeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEE
Q 043397 189 SIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIV 268 (596)
Q Consensus 189 gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv 268 (596)
|++++.++.. .+... .... ..............+.++++. .+||+||+|.........++.. ..++|+|
T Consensus 55 g~~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~~l~~~l~~--~~pDvv~~~~~~~~~~~~~~~~------~~~~p~v 123 (364)
T 1f0k_A 55 GIEIDFIRIS-GLRGK-GIKA-LIAAPLRIFNAWRQARAIMKA--YKPDVVLGMGGYVSGPGGLAAW------SLGIPVV 123 (364)
T ss_dssp TCEEEECCCC-CCTTC-CHHH-HHTCHHHHHHHHHHHHHHHHH--HCCSEEEECSSTTHHHHHHHHH------HTTCCEE
T ss_pred CCceEEecCC-ccCcC-ccHH-HHHHHHHHHHHHHHHHHHHHh--cCCCEEEEeCCcCchHHHHHHH------HcCCCEE
Confidence 5555555421 11110 0000 000011111223334444443 4899999996543322222222 2589999
Q ss_pred EEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhh
Q 043397 269 LTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVL 348 (596)
Q Consensus 269 ~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~ 348 (596)
++.|+..+. . ..+ ...+.+|.+++.++.. +
T Consensus 124 ~~~~~~~~~---------------~----~~~------------------~~~~~~d~v~~~~~~~-------------~ 153 (364)
T 1f0k_A 124 LHEQNGIAG---------------L----TNK------------------WLAKIATKVMQAFPGA-------------F 153 (364)
T ss_dssp EEECSSSCC---------------H----HHH------------------HHTTTCSEEEESSTTS-------------S
T ss_pred EEecCCCCc---------------H----HHH------------------HHHHhCCEEEecChhh-------------c
Confidence 999975421 0 000 1123488899887632 1
Q ss_pred hccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCcc-EEEEEecccccCCHHHHHHH
Q 043397 349 ITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVP-LVVCITRLVAQKGLHLITHA 427 (596)
Q Consensus 349 ~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~-~il~iGrl~~~KGi~~ll~A 427 (596)
+ ++.+|+||+|.+.+.+.. .++.++++ ++.+ ++++.|++.+.||.+.+++|
T Consensus 154 ---~-~~~~i~n~v~~~~~~~~~----------------------~~~~~~~~--~~~~~il~~~g~~~~~k~~~~li~a 205 (364)
T 1f0k_A 154 ---P-NAEVVGNPVRTDVLALPL----------------------PQQRLAGR--EGPVRVLVVGGSQGARILNQTMPQV 205 (364)
T ss_dssp ---S-SCEECCCCCCHHHHTSCC----------------------HHHHHTTC--CSSEEEEEECTTTCCHHHHHHHHHH
T ss_pred ---C-CceEeCCccchhhcccch----------------------hhhhcccC--CCCcEEEEEcCchHhHHHHHHHHHH
Confidence 1 678999999976554321 12345553 4455 45566799999999999999
Q ss_pred HHHHHHcCCE-EEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhc
Q 043397 428 IKRAEELGGQ-MILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRY 506 (596)
Q Consensus 428 ~~~l~~~~~~-lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~ 506 (596)
++++.+ +++ ++|+|+ |+ .+.++++++++++ ++|+|+|+++ ++..+|+.||++|+||- |++++|||++
T Consensus 206 ~~~l~~-~~~~l~i~G~---~~-~~~l~~~~~~~~~-~~v~~~g~~~--~~~~~~~~ad~~v~~sg----~~~~~EAma~ 273 (364)
T 1f0k_A 206 AAKLGD-SVTIWHQSGK---GS-QQSVEQAYAEAGQ-PQHKVTEFID--DMAAAYAWADVVVCRSG----ALTVSEIAAA 273 (364)
T ss_dssp HHHHGG-GEEEEEECCT---TC-HHHHHHHHHHTTC-TTSEEESCCS--CHHHHHHHCSEEEECCC----HHHHHHHHHH
T ss_pred HHHhcC-CcEEEEEcCC---ch-HHHHHHHHhhcCC-CceEEecchh--hHHHHHHhCCEEEECCc----hHHHHHHHHh
Confidence 999865 788 567888 66 4778888888876 4799999994 48999999999999983 9999999999
Q ss_pred CCceEEeCCCCcc--------ccccccCCCCCCCccceEEEeCCC--HHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--
Q 043397 507 GAVPVVRKTGGLA--------DTVFDVDDPSNHEKANGFVFEGID--EGSLNWALDRAFRHFIDKPEEWNRIVQKIME-- 574 (596)
Q Consensus 507 G~pvI~s~~gg~~--------e~i~~~~~~~~~~~~~G~lv~~~d--~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~-- 574 (596)
|+|+|+++.+|.. +++.+ +.|+++++.| +++|+++|.++ |++.+++|++++.+
T Consensus 274 G~Pvi~~~~~g~~~~q~~~~~~~~~~---------g~g~~~~~~d~~~~~la~~i~~l------~~~~~~~~~~~~~~~~ 338 (364)
T 1f0k_A 274 GLPALFVPFQHKDRQQYWNALPLEKA---------GAAKIIEQPQLSVDAVANTLAGW------SRETLLTMAERARAAS 338 (364)
T ss_dssp TCCEEECCCCCTTCHHHHHHHHHHHT---------TSEEECCGGGCCHHHHHHHHHTC------CHHHHHHHHHHHHHTC
T ss_pred CCCEEEeeCCCCchhHHHHHHHHHhC---------CcEEEeccccCCHHHHHHHHHhc------CHHHHHHHHHHHHHhh
Confidence 9999999999875 35544 5699999888 99999999877 57888888877765
Q ss_pred hcCCHHHHHHHHHHHHHHHh
Q 043397 575 NDNSWNNAAGKYMEIYNSIR 594 (596)
Q Consensus 575 ~~fs~~~~~~~~~~iy~~l~ 594 (596)
..|+|+++++++.++|++..
T Consensus 339 ~~~~~~~~~~~~~~~y~~~~ 358 (364)
T 1f0k_A 339 IPDATERVANEVSRVARALE 358 (364)
T ss_dssp CTTHHHHHHHHHHHHHTTC-
T ss_pred ccCHHHHHHHHHHHHHHHHH
Confidence 68999999999999998753
No 20
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.97 E-value=5.2e-30 Score=275.51 Aligned_cols=316 Identities=15% Similarity=0.076 Sum_probs=220.5
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCch
Q 043397 214 ELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGS 293 (596)
Q Consensus 214 ~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~ 293 (596)
.+..|..+.+...+.+......+||||+|+++..+++..+... ..++|+++++|...+... .+.. ++.
T Consensus 102 ~w~~y~~vN~~fa~~l~~~~~~~DiV~vHdyhl~~l~~~lr~~-----~~~~~i~~~~H~pfp~~~----~~~~--lp~- 169 (482)
T 1uqt_A 102 AWDGYLRVNALLADKLLPLLQDDDIIWIHDYHLLPFAHELRKR-----GVNNRIGFFLHIPFPTPE----IFNA--LPT- 169 (482)
T ss_dssp HHHHHHHHHHHHHHHHGGGCCTTCEEEEESGGGTTHHHHHHHT-----TCCSCEEEECCSCCCCHH----HHTT--STT-
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEECchHHHHHHHHHHh-----CCCCcEEEEEcCCCCCHH----HHhh--Ccc-
Confidence 4444554555555555444456799999999988888776543 468999999998654211 1100 000
Q ss_pred hhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcc--h---------hhhhhhccCCcEEEeeCCC
Q 043397 294 IYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSG--W---------LASVLITHRDKYFGILNGI 362 (596)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g--~---------l~~~~~~~~~ki~vI~nGi 362 (596)
+ .-+..++..+|.+...+..+.+.++..- . ....+ ....++.+|||||
T Consensus 170 -------------------~-~~il~~ll~~d~i~f~~~~~~~~f~~~~~~~l~~~~~~~~~~~~~-g~~~~v~vip~GI 228 (482)
T 1uqt_A 170 -------------------Y-DTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAW-GKAFRTEVYPIGI 228 (482)
T ss_dssp -------------------H-HHHHHHHTTSSEEEESSHHHHHHHHHHHHHHSCEEEETTTEEEET-TEEEEEEECCCCC
T ss_pred -------------------H-HHHHHhhhccCeEEEECHHHHHHHHHHHHHHhCCccccCCeEEEC-CeEEEEEEEeccC
Confidence 0 0011123346777777777666654210 0 00111 1245799999999
Q ss_pred CCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHH--c----CC
Q 043397 363 DTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--L----GG 436 (596)
Q Consensus 363 d~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~----~~ 436 (596)
|.+.|.+.... .+. .. ...++++++ ++++|+++||+++.||++.+|+|++++.+ + ++
T Consensus 229 D~~~f~~~~~~----------~~~-~~-~~~lr~~~~-----~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v 291 (482)
T 1uqt_A 229 EPKEIAKQAAG----------PLP-PK-LAQLKAELK-----NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKI 291 (482)
T ss_dssp CHHHHHHHHHS----------CCC-HH-HHHHHHHTT-----TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTE
T ss_pred CHHHHHHHhcC----------cch-HH-HHHHHHHhC-----CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcE
Confidence 98877542100 000 11 345667764 46899999999999999999999999865 3 36
Q ss_pred EEEEEecCC--CCc----chHHHHHHHHHcC----CC--CcEEE-EeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHH
Q 043397 437 QMILLGNSP--VHW----VQKDFEDLANLHN----KG--TSTRI-LLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIG 503 (596)
Q Consensus 437 ~lvIvG~~~--~g~----~~~~l~~~~~~~~----~~--~~V~~-~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEA 503 (596)
+|+++|... +|+ ..+++++++.+++ .. ..|+| .|.++.+++..+|++||++++||..||||++++||
T Consensus 292 ~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~ADv~v~pS~~EGfgLv~lEA 371 (482)
T 1uqt_A 292 RYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEY 371 (482)
T ss_dssp EEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHH
T ss_pred EEEEEECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHHHccEEEECCCcccCCchHHHH
Confidence 799999621 243 2345555555432 21 24665 58999999999999999999999999999999999
Q ss_pred HhcCC-----ceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--hc
Q 043397 504 MRYGA-----VPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME--ND 576 (596)
Q Consensus 504 ma~G~-----pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~--~~ 576 (596)
||||+ |+|+|+.+|..+.+ + +|++++|.|+++++++|.+++++ ++++++++++++.+ .+
T Consensus 372 mA~g~~~~~gpvV~S~~~G~~~~l-~----------~g~lv~p~d~~~lA~ai~~lL~~---~~~~r~~~~~~~~~~v~~ 437 (482)
T 1uqt_A 372 VAAQDPANPGVLVLSQFAGAANEL-T----------SALIVNPYDRDEVAAALDRALTM---SLAERISRHAEMLDVIVK 437 (482)
T ss_dssp HHHSCTTSCCEEEEETTBGGGGTC-T----------TSEEECTTCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCCEEEECCCCCHHHh-C----------CeEEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHh
Confidence 99997 89999998888877 3 68999999999999999999972 45666677655544 57
Q ss_pred CCHHHHHHHHHHHHHHH
Q 043397 577 NSWNNAAGKYMEIYNSI 593 (596)
Q Consensus 577 fs~~~~~~~~~~iy~~l 593 (596)
|||+.+++++++.|+++
T Consensus 438 ~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 438 NDINHWQECFISDLKQI 454 (482)
T ss_dssp TCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999999876
No 21
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.97 E-value=3.8e-29 Score=261.65 Aligned_cols=218 Identities=13% Similarity=0.053 Sum_probs=168.1
Q ss_pred cccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCC-CCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCC
Q 043397 322 VYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNG-IDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGL 400 (596)
Q Consensus 322 ~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nG-id~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l 400 (596)
+.+|.++++|+..++.+...| .+.+++.+|+|| +|...+.+.... +..+++++
T Consensus 149 ~~~d~ii~~s~~~~~~~~~~g-------~~~~~i~vi~n~~~d~~~~~~~~~~-----------------~~~~~~~~-- 202 (375)
T 3beo_A 149 VMADLHFSPTAKSATNLQKEN-------KDESRIFITGNTAIDALKTTVKETY-----------------SHPVLEKL-- 202 (375)
T ss_dssp HHCSEEEESSHHHHHHHHHTT-------CCGGGEEECCCHHHHHHHHHCCSSC-----------------CCHHHHTT--
T ss_pred hhhheeeCCCHHHHHHHHHcC-------CCcccEEEECChhHhhhhhhhhhhh-----------------hHHHHHhc--
Confidence 348999999999888865443 345689999999 786544332100 01223333
Q ss_pred CCCCCccEEEEEeccccc-CCHHHHHHHHHHHHH--cCCEEEEEecCCCCcchHHHHHHHHHc-CCCCcEEEEeccCHHH
Q 043397 401 KSEGTVPLVVCITRLVAQ-KGLHLITHAIKRAEE--LGGQMILLGNSPVHWVQKDFEDLANLH-NKGTSTRILLMYSEEL 476 (596)
Q Consensus 401 ~~~~~~~~il~iGrl~~~-KGi~~ll~A~~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~-~~~~~V~~~g~~~~~~ 476 (596)
+ ++..+++++||+.+. ||++.+++|++++.+ +++++++ |. |+. ..+++.++++ +..++|+|+|.++..+
T Consensus 203 ~--~~~~vl~~~gr~~~~~K~~~~li~a~~~l~~~~~~~~~i~-~~---g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~ 275 (375)
T 3beo_A 203 G--NNRLVLMTAHRRENLGEPMRNMFRAIKRLVDKHEDVQVVY-PV---HMN-PVVRETANDILGDYGRIHLIEPLDVID 275 (375)
T ss_dssp T--TSEEEEEECCCGGGTTHHHHHHHHHHHHHHHHCTTEEEEE-EC---CSC-HHHHHHHHHHHTTCTTEEEECCCCHHH
T ss_pred c--CCCeEEEEecccccchhHHHHHHHHHHHHHhhCCCeEEEE-eC---CCC-HHHHHHHHHHhhccCCEEEeCCCCHHH
Confidence 2 445678899999886 999999999999865 4778655 55 433 2333333332 3346899999999989
Q ss_pred HHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeC-CCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHH
Q 043397 477 SHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRK-TGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAF 555 (596)
Q Consensus 477 l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~-~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll 555 (596)
+..+|++||++|+|| |.+++|||++|+|+|+++ .||.+|++.+ + +|+++++ |+++|+++|.+++
T Consensus 276 ~~~~~~~ad~~v~~s-----g~~~lEA~a~G~Pvi~~~~~~~~~e~v~~--------g-~g~~v~~-d~~~la~~i~~ll 340 (375)
T 3beo_A 276 FHNVAARSYLMLTDS-----GGVQEEAPSLGVPVLVLRDTTERPEGIEA--------G-TLKLAGT-DEETIFSLADELL 340 (375)
T ss_dssp HHHHHHTCSEEEECC-----HHHHHHHHHHTCCEEECSSCCSCHHHHHT--------T-SEEECCS-CHHHHHHHHHHHH
T ss_pred HHHHHHhCcEEEECC-----CChHHHHHhcCCCEEEecCCCCCceeecC--------C-ceEEcCC-CHHHHHHHHHHHH
Confidence 999999999999998 778999999999999996 4999999877 4 9999986 9999999999999
Q ss_pred HhccCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 043397 556 RHFIDKPEEWNRIVQKIME--NDNSWNNAAGKYMEIYN 591 (596)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~iy~ 591 (596)
+ |++.+++|++++.+ ..|+|+++++.+.++++
T Consensus 341 ~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 374 (375)
T 3beo_A 341 S----DKEAHDKMSKASNPYGDGRASERIVEAILKHFN 374 (375)
T ss_dssp H----CHHHHHHHCCCCCTTCCSCHHHHHHHHHHHHTT
T ss_pred h----ChHhHhhhhhcCCCCCCCcHHHHHHHHHHHHhh
Confidence 9 99999999865543 57999999999988764
No 22
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.96 E-value=5.7e-29 Score=261.23 Aligned_cols=290 Identities=11% Similarity=0.029 Sum_probs=202.4
Q ss_pred HHHHHHHHhhCCCCcEEEEcCC-ccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhh
Q 043397 223 RACLEWMQVTGVQPDIIHVHEW-QIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKA 301 (596)
Q Consensus 223 ~~~~~~l~~~~~~pDVIh~~~~-~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (596)
..+.++++. .+||+||+|+. ...+...+... ..++|++++.|+....... ......
T Consensus 76 ~~l~~~l~~--~~pDvv~~~~~~~~~~~~~~~a~------~~~ip~v~~~~~~~~~~~~-----------~~~~~~---- 132 (384)
T 1vgv_A 76 EGLKPILAE--FKPDVVLVHGDTTTTLATSLAAF------YQRIPVGHVEAGLRTGDLY-----------SPWPEE---- 132 (384)
T ss_dssp HHHHHHHHH--HCCSEEEEETTCHHHHHHHHHHH------TTTCCEEEESCCCCCSCTT-----------SSTTHH----
T ss_pred HHHHHHHHH--hCCCEEEEeCCchHHHHHHHHHH------HHCCCEEEEeccccccccc-----------CCCchH----
Confidence 344455554 58999999964 22222222221 4589999998875321000 000000
Q ss_pred ccccccCCCcccchhhchh-ccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCC-CCCCcCCCCcCCCcccc
Q 043397 302 IDDRTIGHNPERLSLLKGG-IVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGI-DTVIWNPATDAFLPAKF 379 (596)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~-~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGi-d~~~~~p~~~~~~~~~~ 379 (596)
..+.. .+.+|.++++|+..++.+...| .+.+++.+++||+ |...+.+....
T Consensus 133 --------------~~~~~~~~~~d~ii~~s~~~~~~l~~~g-------~~~~~i~vi~n~~~d~~~~~~~~~~------ 185 (384)
T 1vgv_A 133 --------------ANRTLTGHLAMYHFSPTETSRQNLLREN-------VADSRIFITGNTVIDALLWVRDQVM------ 185 (384)
T ss_dssp --------------HHHHHHHTTCSEEEESSHHHHHHHHHTT-------CCGGGEEECCCHHHHHHHHHHHHTT------
T ss_pred --------------hhHHHHHhhccEEEcCcHHHHHHHHHcC-------CChhhEEEeCChHHHHHHhhhhccc------
Confidence 01111 2448999999999888865443 3456899999995 42211110000
Q ss_pred CCCCchhhhhhHHHHHhhcC-CCCCCCccEEEEEeccccc-CCHHHHHHHHHHHHH--cCCEEEEE-ecCCCCc-chHHH
Q 043397 380 HAQKPEGKKICKYYIQKGLG-LKSEGTVPLVVCITRLVAQ-KGLHLITHAIKRAEE--LGGQMILL-GNSPVHW-VQKDF 453 (596)
Q Consensus 380 ~~~~~~~k~~~k~~~~~~l~-l~~~~~~~~il~iGrl~~~-KGi~~ll~A~~~l~~--~~~~lvIv-G~~~~g~-~~~~l 453 (596)
.....+..++++++ ++. .+..+++++||+.++ ||++.+++|+.++.+ ++++|+++ |. ++ ..+.+
T Consensus 186 ------~~~~~~~~~~~~~~~~~~-~~~~vl~~~gr~~~~~kg~~~li~a~~~l~~~~~~~~l~i~~g~---~~~~~~~l 255 (384)
T 1vgv_A 186 ------SSDKLRSELAANYPFIDP-DKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHL---NPNVREPV 255 (384)
T ss_dssp ------TCHHHHHHHHTTCTTCCT-TSEEEEEECCCBSSCCHHHHHHHHHHHHHHHHCTTEEEEEECCB---CHHHHHHH
T ss_pred ------cchhhhHHHHHhccccCC-CCCEEEEEeCCccccchHHHHHHHHHHHHHhhCCCeEEEEEcCC---CHHHHHHH
Confidence 00001134567777 631 234578899999887 999999999999866 57888886 43 33 44555
Q ss_pred HHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCC-CCccccccccCCCCCCC
Q 043397 454 EDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKT-GGLADTVFDVDDPSNHE 532 (596)
Q Consensus 454 ~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~-gg~~e~i~~~~~~~~~~ 532 (596)
++++. ..++|+|+|.++.+++..+|+.||++|+|| |.+++|||++|+|+|+++. ||..+++.+
T Consensus 256 ~~~~~---~~~~v~~~g~~~~~~~~~~~~~ad~~v~~S-----g~~~lEA~a~G~PvI~~~~~~~~~e~v~~-------- 319 (384)
T 1vgv_A 256 NRILG---HVKNVILIDPQEYLPFVWLMNHAWLILTDS-----GGIQEEAPSLGKPVLVMRDTTERPEAVTA-------- 319 (384)
T ss_dssp HHHHT---TCTTEEEECCCCHHHHHHHHHHCSEEEESS-----STGGGTGGGGTCCEEEESSCCSCHHHHHH--------
T ss_pred HHHhh---cCCCEEEeCCCCHHHHHHHHHhCcEEEECC-----cchHHHHHHcCCCEEEccCCCCcchhhhC--------
Confidence 55543 246899999988899999999999999999 4458999999999999986 999999977
Q ss_pred ccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHh
Q 043397 533 KANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME--NDNSWNNAAGKYMEIYNSIR 594 (596)
Q Consensus 533 ~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~iy~~l~ 594 (596)
+ +|+++++ |+++|+++|.++++ |++.+++|++++.+ ..|+|+++++.+.++|+++.
T Consensus 320 g-~g~lv~~-d~~~la~~i~~ll~----d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 377 (384)
T 1vgv_A 320 G-TVRLVGT-DKQRIVEEVTRLLK----DENEYQAMSRAHNPYGDGQACSRILEALKNNRISLG 377 (384)
T ss_dssp T-SEEEECS-SHHHHHHHHHHHHH----CHHHHHHHHSSCCTTCCSCHHHHHHHHHHHTCCCC-
T ss_pred C-ceEEeCC-CHHHHHHHHHHHHh----ChHHHhhhhhccCCCcCCCHHHHHHHHHHHHHHhhc
Confidence 4 9999987 99999999999999 99999999865543 67999999999999887654
No 23
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.96 E-value=1.7e-27 Score=253.06 Aligned_cols=312 Identities=15% Similarity=0.093 Sum_probs=224.4
Q ss_pred hHHHHHHHHHHHHHHHHhhC--CCCcEEEEcCCccchHHHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCC
Q 043397 214 ELEAYLFFSRACLEWMQVTG--VQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLD 291 (596)
Q Consensus 214 ~~~~~~~f~~~~~~~l~~~~--~~pDVIh~~~~~~~~~~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~ 291 (596)
.+..|....+...+.+.... ..-|+|.+|+++..++|..+... .++.++.+.+|...|...
T Consensus 126 ~w~~Y~~vN~~fA~~i~~~~~~~~~D~VwVhDYhL~llp~~lR~~-----~~~~~igfFlHiPfPs~e------------ 188 (496)
T 3t5t_A 126 GWADFGRFTRDFADAILKSSAQSADPVYLVHDYQLVGVPALLREQ-----RPDAPILLFVHIPWPSAD------------ 188 (496)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCSSCEEEEESGGGTTHHHHHHHH-----CTTSCEEEECCSCCCCHH------------
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCEEEEeCccHhHHHHHHHhh-----CCCCeEEEEEcCCCCCHH------------
Confidence 44455555555444443332 35789999999999999988765 678999999998765221
Q ss_pred chhhhhhhhhccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhh-h-------------ccCCcEEE
Q 043397 292 GSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVL-I-------------THRDKYFG 357 (596)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~-~-------------~~~~ki~v 357 (596)
+|+.+.. .+-.-+-.++..+|.|.+.++.+++.+++. ....+ + ....++.+
T Consensus 189 --~f~~Lp~-----------~~r~ell~gll~~DligF~t~~y~~~Fl~~--~~r~l~g~~~~~~~~~v~~~gr~v~v~v 253 (496)
T 3t5t_A 189 --YWRILPK-----------EIRTGILHGMLPATTIGFFADRWCRNFLES--VADLLPDARIDREAMTVEWRGHRTRLRT 253 (496)
T ss_dssp --HHTTSCH-----------HHHHHHHHHHTTSSEEEESSHHHHHHHHHH--HHHHCTTCEEETTTTEEEETTEEEEEEE
T ss_pred --HHhhCcH-----------hHHHHHHHHHHhCCEEEEecHHHHHHHHHH--HHHHhcCCcccccCCeEEECCEEEEEEE
Confidence 1111100 001122345667999999999999887643 11222 1 11247889
Q ss_pred eeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHH--cC
Q 043397 358 ILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--LG 435 (596)
Q Consensus 358 I~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~~ 435 (596)
+|+|||++.|.+.... .++.++++++ ++++|+++||+++.||++.+|+|+ ++.+ ++
T Consensus 254 iP~GID~~~f~~~~~~----------------~~~~lr~~~~-----~~~lIl~VgRLd~~KGi~~lL~Af-~ll~~~P~ 311 (496)
T 3t5t_A 254 MPLGYSPLTLDGRNPQ----------------LPEGIEEWAD-----GHRLVVHSGRTDPIKNAERAVRAF-VLAARGGG 311 (496)
T ss_dssp CCCCBCGGGC----CC----------------CCTTHHHHHT-----TSEEEEEEEESSGGGCHHHHHHHH-HHHHHTSS
T ss_pred eccEeCHHHhchhhHH----------------HHHHHHHHhC-----CceEEEEcccCccccCHHHHHHHH-HHHHhCcc
Confidence 9999999988765210 0134555553 578999999999999999999999 7765 33
Q ss_pred ---CEEEEEecC--CCCcc----hHHHHHHHHHcC----CCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHH
Q 043397 436 ---GQMILLGNS--PVHWV----QKDFEDLANLHN----KGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMI 502 (596)
Q Consensus 436 ---~~lvIvG~~--~~g~~----~~~l~~~~~~~~----~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lE 502 (596)
+.|+++|.. .+++. .+++++++.+.+ .. .|+|+|.++.+++..+|+.||++++||..||||++++|
T Consensus 312 ~~~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~-~V~f~g~v~~~el~aly~~ADv~vv~SlrEGfgLv~~E 390 (496)
T 3t5t_A 312 LEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSD-TVRIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFE 390 (496)
T ss_dssp CTTEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTT-SEEEEECCCHHHHHHHHHHCSEEEECCSSBSCCSHHHH
T ss_pred cceEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCc-CEEEeCCCCHHHHHHHHHhccEEEECcccccCChhHHH
Confidence 568888752 23433 344555554433 22 69999999999999999999999999999999999999
Q ss_pred HHhcC---CceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--hcC
Q 043397 503 GMRYG---AVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME--NDN 577 (596)
Q Consensus 503 Ama~G---~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~--~~f 577 (596)
||||| .|+|+|..+|..+.+.+ +|++++|.|+++++++|.+++++ .+++++++.++..+ .++
T Consensus 391 amA~~~~~g~lVlSe~aGa~~~l~~----------~allVnP~D~~~lA~AI~~aL~m---~~~er~~r~~~~~~~V~~~ 457 (496)
T 3t5t_A 391 APLVNERDADVILSETCGAAEVLGE----------YCRSVNPFDLVEQAEAISAALAA---GPRQRAEAAARRRDAARPW 457 (496)
T ss_dssp HHHHCSSCCEEEEETTBTTHHHHGG----------GSEEECTTBHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCCCCCEEEeCCCCCHHHhCC----------CEEEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHC
Confidence 99996 89999999999988843 79999999999999999999984 44556665555444 689
Q ss_pred CHHHHHHHHHHHHHHH
Q 043397 578 SWNNAAGKYMEIYNSI 593 (596)
Q Consensus 578 s~~~~~~~~~~iy~~l 593 (596)
+++..++.+++-.+..
T Consensus 458 d~~~W~~~fl~~L~~~ 473 (496)
T 3t5t_A 458 TLEAWVQAQLDGLAAD 473 (496)
T ss_dssp BHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999999998876653
No 24
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=99.95 E-value=2.2e-27 Score=259.99 Aligned_cols=461 Identities=15% Similarity=0.132 Sum_probs=306.3
Q ss_pred cccCHHHHHhHHHHHHHhcCCeEEEEeccccchhhh----------h----------hcccceeeeEEeecCCceEEEEE
Q 043397 123 KVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQ----------E----------ISDLALITTYNSYHDGNWVATNA 182 (596)
Q Consensus 123 ~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~~~~----------~----------~~~~~~~~~~~~~~~~~~~~~~~ 182 (596)
..||+|+.+....++++..|....-+.-.|...--. . ++..+....+.+..++..+..-.
T Consensus 112 gnGGLGrLAac~ldS~a~l~~p~~G~Gl~Y~~G~F~Q~i~dG~Q~E~~d~wl~~g~pwe~~r~~~~~~V~f~g~~v~a~~ 191 (796)
T 2c4m_A 112 GNGGLGRLAACFLDSAVTQDYPVTGYGLLYRFGLFRQSFNEGFQVEKPDPWREEEYPFTIRRASDQLVVCFDDMKTRAIP 191 (796)
T ss_dssp CCSHHHHHHHHHHHHHHHTTCCEEEEEECCSSCSCEEEEETTEEEEECCCSSSSCCTTSEECGGGCEEEEETTEEEEEEE
T ss_pred CCCcHHHHHHHHHHHHHhCCCCeEEEeecccCCCeEEEeeCCEEEeeCCccccCCCceeEecCCcEEEEEeCCEEEEEEE
Confidence 589999999999999999999988887554321100 0 01111122333444443332211
Q ss_pred EeeeeCC--------eEEEEEcCCccc----c-CC----------------CcccCCCh------hhHHHHHHHHHHHHH
Q 043397 183 YHGVVSS--------IPVIFIEPSNQF----F-KG----------------KNVYGGSY------NELEAYLFFSRACLE 227 (596)
Q Consensus 183 ~~~~~~g--------v~v~~~~~~~~~----~-~~----------------~~~y~~~~------~~~~~~~~f~~~~~~ 227 (596)
+...+.| .++....+...+ | .+ ..+|+++. -++.+..+|+.+.++
T Consensus 192 yd~pi~gy~~~~~n~lrlW~a~~~~~f~l~~fn~gdy~~a~~~~~~~~~It~~LYp~D~~~~Gk~lRL~Qe~ff~~a~lq 271 (796)
T 2c4m_A 192 YDMPITGYGTHNVGTLRLWKAEPWEEFDYDAFNAQRFTDAIIERERVSDICRVLYPNDTTYEGKKLRVRQQYFFTSASLQ 271 (796)
T ss_dssp EEEEECCTTCCCCEEEEEEEEEESSSSCHHHHHTTCHHHHHHHHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeccccCcCCCceEEEEEEecccccccchhhccCcchhhhhhchHhhhchhhcCcCCCCCcchHHHHHHhHHHHHHHHHH
Confidence 2222212 111122111111 0 11 23677652 244455667777776
Q ss_pred H-HHhh-----CC----CCcEEEEcCCccchHHH-HHHHHh--------hhccCCCCcEEEEEcCCCCCCc--chhhhhh
Q 043397 228 W-MQVT-----GV----QPDIIHVHEWQIGALPL-LYWDMY--------QSLSLKKPRIVLTIHNMEHYGE--CRQEQLS 286 (596)
Q Consensus 228 ~-l~~~-----~~----~pDVIh~~~~~~~~~~~-~~~~~~--------~~~~~~~~pvv~tiH~~~~~~~--~~~~~~~ 286 (596)
. ++.. .. +||+||+|+||+++++. +++..+ .+....+..+++|.|+..+++. ++...+.
T Consensus 272 ~ilr~~~~~~~~l~~l~~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~egle~wp~~l~~ 351 (796)
T 2c4m_A 272 AMIQDHLAHHKDLSNFAEFHSVQLNDTHPVLAIPELMRLLMDEHDMGWEESWAIVSKTFAYTNHTVLTEALEQWDEQIFQ 351 (796)
T ss_dssp HHHHHHHHHSSCSTTHHHHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHHHHEEEECCCSSSTTSCEEEHHHHH
T ss_pred HHHHHHHHhCCChhhcCCCeEEEeCCChHHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCchHHHhhhCCHHHHH
Confidence 4 4422 11 68999999999998877 443221 0111146789999999999875 4433332
Q ss_pred hcC---------CCchhhhhhhhh------ccccccCCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhcc
Q 043397 287 KCG---------LDGSIYASVEKA------IDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITH 351 (596)
Q Consensus 287 ~~~---------~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~ 351 (596)
+.- +....+..+... +..-.+ .....++|.+.++..|+.|.+||+.+.+++...- +...+...
T Consensus 352 ~~lpr~~~ii~~I~~~~~~~~~~~~~~~~~~~~~~i-~~~~~vnMa~lai~~S~~VNgVS~lHae~ik~~~-f~~~~~~~ 429 (796)
T 2c4m_A 352 QLFWRVWEIIAEIDRRFRLERAADGLDEETINRMAP-IQHGTVHMAWIACYAAYSINGVAALHTEIIKAET-LADWYALW 429 (796)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHCS-EETTEEEHHHHHHHHCSEEEESSHHHHHHHHHTT-THHHHHHC
T ss_pred HHhHHHHHHHcCcCHHHHHHHHhcCCcHhhhhcccc-eeCCcccHHHHHHHhcCceeeccHHHHHHhhhhh-hhhHHHcC
Confidence 210 011111100000 000000 1124789999999999999999999999987431 23445556
Q ss_pred CCcEEEeeCCCCCCCc----CCCCcCCCccccC-----------------CCC-------chhhhhhHHH----HHhhcC
Q 043397 352 RDKYFGILNGIDTVIW----NPATDAFLPAKFH-----------------AQK-------PEGKKICKYY----IQKGLG 399 (596)
Q Consensus 352 ~~ki~vI~nGid~~~~----~p~~~~~~~~~~~-----------------~~~-------~~~k~~~k~~----~~~~l~ 399 (596)
+.++..|.||||+..| +|..+..+...+. ..+ .+.|..+|.. +++++|
T Consensus 430 p~kf~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~G 509 (796)
T 2c4m_A 430 PEKFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDELKKLRSYADDKSVLEELRAIKAANKQDFAEWILERQG 509 (796)
T ss_dssp GGGEEECCCCBCTCCCCCTTCHHHHHHHHHHHSSSGGGGCGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccCCcchHHhhcccCHhHHHHHHHhcCchhhhhChHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7899999999999999 6766555544433 333 3567777877 589999
Q ss_pred CCCCCCccEEEEEecccccCCHHH-HHHHHHHHHH---------cCCEEEEEecCCCCcchHH------HHHHHH----H
Q 043397 400 LKSEGTVPLVVCITRLVAQKGLHL-ITHAIKRAEE---------LGGQMILLGNSPVHWVQKD------FEDLAN----L 459 (596)
Q Consensus 400 l~~~~~~~~il~iGrl~~~KGi~~-ll~A~~~l~~---------~~~~lvIvG~~~~g~~~~~------l~~~~~----~ 459 (596)
+..+++.+.++++.|+..+||.++ +++.+.++.+ .++++++.|+. +..+... +..+++ .
T Consensus 510 l~vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA-~P~y~~aK~iIk~i~~va~~in~d 588 (796)
T 2c4m_A 510 IEIDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKA-APGYVRAKAIIKLINSIADLVNND 588 (796)
T ss_dssp CCCCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCC-CTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecC-CHhHHHHHHHHHHHHHHHHHhccc
Confidence 988889999999999999999999 8998887753 36799999983 2223322 444444 1
Q ss_pred cCCCC--cEEEEeccCHHHHHHHHHhCCEEEEcCC--CCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccc
Q 043397 460 HNKGT--STRILLMYSEELSHMLYAAADIVLVPSI--YEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKAN 535 (596)
Q Consensus 460 ~~~~~--~V~~~g~~~~~~l~~~~a~aDi~l~PS~--~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~ 535 (596)
-...+ +|.|+..++.+....++++||+++.||. +|+||+..|-+|.+|+++|++-.|...|+.++.. .+|
T Consensus 589 p~~~~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG------~~N 662 (796)
T 2c4m_A 589 PEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDGANVEIVDSVG------EEN 662 (796)
T ss_dssp TTTTTTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEESSTHHHHHHHHHC------GGG
T ss_pred cccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEEeccCCeEeehhhhcC------CCc
Confidence 12344 7999999999999999999999999999 8999999999999999999888888777765421 479
Q ss_pred eEEEeC--CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 043397 536 GFVFEG--IDEGSLNWALDRAFRHFIDKPEEWNRIVQKIMENDNSWNNAAGKYMEIYNSIRV 595 (596)
Q Consensus 536 G~lv~~--~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~iy~~l~~ 595 (596)
||+|.. .++.++... .+..+.|..++ .++++..+.+...|||+.. +.|.++|++++.
T Consensus 663 gF~FG~~~~ev~~l~~~-y~a~~~y~~~~-~~~~vvd~~~~g~fs~~~~-~~y~~Ly~~L~~ 721 (796)
T 2c4m_A 663 AYIFGARVEELPALRES-YKPYELYETVP-GLKRALDALDNGTLNDNNS-GLFYDLKHSLIH 721 (796)
T ss_dssp SEEESCCTTTHHHHHHT-CCHHHHHHHST-THHHHHHTTTSSSSCCTTC-CHHHHHHHHHHS
T ss_pred EEEecCchhhHHHHHHh-hChHHHhhcCH-HHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHh
Confidence 999986 677777766 56666665566 5777777777789999887 789999998863
No 25
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.95 E-value=5.7e-27 Score=222.93 Aligned_cols=184 Identities=26% Similarity=0.440 Sum_probs=158.8
Q ss_pred EeeCCCCCCCcC--CCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEeccc-ccCCHHHHHHHHHHHH-
Q 043397 357 GILNGIDTVIWN--PATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLV-AQKGLHLITHAIKRAE- 432 (596)
Q Consensus 357 vI~nGid~~~~~--p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~-~~KGi~~ll~A~~~l~- 432 (596)
.||||+|.+.|. |... .....+..++++++++ +.++|+|+||+. +.||++.+++|+..+.
T Consensus 1 gipngvd~~~f~~~~~~~-------------~~~~~~~~~r~~~~~~---~~~~i~~~G~~~~~~K~~~~li~a~~~l~~ 64 (200)
T 2bfw_A 1 GSHNGIDCSFWNESYLTG-------------SRDERKKSLLSKFGMD---EGVTFMFIGRFDRGQKGVDVLLKAIEILSS 64 (200)
T ss_dssp ----CCCTTTSSGGGSCS-------------CHHHHHHHHHHHTTCC---SCEEEEEESCBCSSSSCHHHHHHHHHHHTT
T ss_pred CCCCccChhhcccccccc-------------chhhHHHHHHHHcCCC---CCCEEEEeeccccccCCHHHHHHHHHHHHh
Confidence 489999999987 6521 1122356788899984 556999999999 9999999999999995
Q ss_pred -H--cCCEEEEEecCCCCc--chHHHHHHHHHcCCCCcEEE-EeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhc
Q 043397 433 -E--LGGQMILLGNSPVHW--VQKDFEDLANLHNKGTSTRI-LLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRY 506 (596)
Q Consensus 433 -~--~~~~lvIvG~~~~g~--~~~~l~~~~~~~~~~~~V~~-~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~ 506 (596)
+ ++++|+|+|. +. +.+.+++++++++ +|+| +|+++.+++..+|+.||++++||..|++|++++|||++
T Consensus 65 ~~~~~~~~l~i~G~---~~~~~~~~l~~~~~~~~---~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~ 138 (200)
T 2bfw_A 65 KKEFQEMRFIIIGK---GDPELEGWARSLEEKHG---NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCL 138 (200)
T ss_dssp SGGGGGEEEEEECC---BCHHHHHHHHHHHHHCT---TEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHT
T ss_pred hccCCCeEEEEECC---CChHHHHHHHHHHHhcC---CEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHC
Confidence 3 5899999999 77 8889999998876 8999 99999999999999999999999999999999999999
Q ss_pred CCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043397 507 GAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIME 574 (596)
Q Consensus 507 G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~ 574 (596)
|+|||+++.||..+++ + +.+|+++++.|+++++++|.+++++ |++.+.+|++++.+
T Consensus 139 G~PvI~~~~~~~~e~~-~--------~~~g~~~~~~~~~~l~~~i~~l~~~---~~~~~~~~~~~a~~ 194 (200)
T 2bfw_A 139 GAIPIASAVGGLRDII-T--------NETGILVKAGDPGELANAILKALEL---SRSDLSKFRENCKK 194 (200)
T ss_dssp TCEEEEESCHHHHHHC-C--------TTTCEEECTTCHHHHHHHHHHHHHC---CHHHHHHHHHHHHH
T ss_pred CCCEEEeCCCChHHHc-C--------CCceEEecCCCHHHHHHHHHHHHhc---CHHHHHHHHHHHHH
Confidence 9999999999999999 6 6899999999999999999999974 78888888877654
No 26
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=99.95 E-value=1.6e-26 Score=253.22 Aligned_cols=378 Identities=16% Similarity=0.140 Sum_probs=266.9
Q ss_pred CcccCCCh------hhHHHHHHHHHHHHHH-HHhh-----CC----CCcEEEEcCCccchHHH-HHHHHhh--------h
Q 043397 205 KNVYGGSY------NELEAYLFFSRACLEW-MQVT-----GV----QPDIIHVHEWQIGALPL-LYWDMYQ--------S 259 (596)
Q Consensus 205 ~~~y~~~~------~~~~~~~~f~~~~~~~-l~~~-----~~----~pDVIh~~~~~~~~~~~-~~~~~~~--------~ 259 (596)
..+|+++. -.+.+..+|+.+.++. ++.. .. +||+||+|+||+++++. +++..+. +
T Consensus 253 ~~LYp~D~~~~Gk~lRL~Qe~ff~~a~lq~ilr~~~~~~~~~~~l~~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A 332 (796)
T 1l5w_A 253 KVLYPNDNAFEGKKLRLMQQYFQCACSVADILRRHHLAGRKLHELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDA 332 (796)
T ss_dssp TCSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGHHHHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHH
T ss_pred hcCcCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhcCCccEEEecCCccHhHHHHHHHHHhhhcCCCHHHH
Confidence 34777663 2444556677777765 4422 01 69999999999998877 4433211 1
Q ss_pred ccCCCCcEEEEEcCCCCCCc--chhhhhhhcCCCchhh----------hhhhhh-------ccccccCCCcccchhhchh
Q 043397 260 LSLKKPRIVLTIHNMEHYGE--CRQEQLSKCGLDGSIY----------ASVEKA-------IDDRTIGHNPERLSLLKGG 320 (596)
Q Consensus 260 ~~~~~~pvv~tiH~~~~~~~--~~~~~~~~~~~~~~~~----------~~~~~~-------~~~~~~~~~~~~~~~~~~~ 320 (596)
....+..+++|.|+..+++. ++...+.+.- +.... ...... +..-.+ .....++|.+.+
T Consensus 333 ~~i~~~~~vyT~HTl~~egle~wp~~l~~~~l-pr~~~ii~~I~~~f~~~~~~~~~~~~~~~~~~~i-~~~~~vnMa~la 410 (796)
T 1l5w_A 333 WAITSKTFAYTNHTLMPEALERWDVKLVKGLL-PRHMQIINEINTRFKTLVEKTWPGDEKVWAKLAV-VHDKQVHMANLC 410 (796)
T ss_dssp HHHHTTTEEEECCCCSGGGSCEEEHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHCS-EETTEEEHHHHH
T ss_pred HHHhhccEEEEecCCcHhhhhcCCHHHHHHHh-HHHHHHHhccCHHHHHHHHHhcCCcHHHHhhhhc-ccCCcccHHHHH
Confidence 11257899999999999774 4333322110 10000 000000 000000 112478999999
Q ss_pred ccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCc----CCCCcCCCccccC----------------
Q 043397 321 IVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIW----NPATDAFLPAKFH---------------- 380 (596)
Q Consensus 321 ~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~----~p~~~~~~~~~~~---------------- 380 (596)
+..|+.|.+||+.+.++++..- +...+...+.++..|.||||+..| +|..+..+...+.
T Consensus 411 i~~S~~VNgVS~lH~e~ik~~~-f~~~~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~w~~d~~~l~~l~~~ 489 (796)
T 1l5w_A 411 VVGGFAVNGVAALHSDLVVKDL-FPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKF 489 (796)
T ss_dssp HHHSSEEEESSHHHHHHHHHTT-SHHHHHHCGGGEEECCCCBCHHHHTTTTCHHHHHHHHHHCSSCCTTCGGGGGGGGGG
T ss_pred HHhcCccccccHHHHHHHHhHH-hhHHHHhCccccCCCcCCCcHHHhhcccCHhHHHHHHHhcCcccccCHHHHHHHHhc
Confidence 9999999999999999987432 234455567899999999999988 6766555544443
Q ss_pred CCC-------chhhhhhHHH----HHhhcCCCCCCCccEEEEEecccccCCHHH-HHHHHHHHHH---------cCCEEE
Q 043397 381 AQK-------PEGKKICKYY----IQKGLGLKSEGTVPLVVCITRLVAQKGLHL-ITHAIKRAEE---------LGGQMI 439 (596)
Q Consensus 381 ~~~-------~~~k~~~k~~----~~~~l~l~~~~~~~~il~iGrl~~~KGi~~-ll~A~~~l~~---------~~~~lv 439 (596)
..+ .+.|..+|.. +++++|+..+++.+.++++.|+..+||.++ ++..+.++.+ .+++++
T Consensus 490 ~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~I 569 (796)
T 1l5w_A 490 ADDAKFRQQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFL 569 (796)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEE
Confidence 222 3567777777 589999988899999999999999999999 8998888765 468999
Q ss_pred EEecCCCCcchHH------HHHHHHHc----CCCC--cEEEEeccCHHHHHHHHHhCCEEEEcCC--CCCCchHHHHHHh
Q 043397 440 LLGNSPVHWVQKD------FEDLANLH----NKGT--STRILLMYSEELSHMLYAAADIVLVPSI--YEPCGLAQMIGMR 505 (596)
Q Consensus 440 IvG~~~~g~~~~~------l~~~~~~~----~~~~--~V~~~g~~~~~~l~~~~a~aDi~l~PS~--~E~~gl~~lEAma 505 (596)
+.|+. +..+... +..+++.. ...+ +|.|+..++.+....++++||+++.||. +|+||+..|-+|.
T Consensus 570 f~GKA-~P~y~~aK~iIk~i~~va~~in~Dp~~~~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~ 648 (796)
T 1l5w_A 570 FGAKA-APGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLAL 648 (796)
T ss_dssp EECCC-CTTCHHHHHHHHHHHHHHHHHHTCTTTGGGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHH
T ss_pred EEecC-ChhHHHHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHH
Confidence 99983 2223322 44444411 2234 6999999999999999999999999999 8999999999999
Q ss_pred cCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHH---HHHHHHHHhccCCHHHHHHHHHHHHHhcCCHHHH
Q 043397 506 YGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLN---WALDRAFRHFIDKPEEWNRIVQKIMENDNSWNNA 582 (596)
Q Consensus 506 ~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la---~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~ 582 (596)
+|+++|++-.|...|+.++.. .+|||+|.. +++++. ....+..+.|..+| .++++..+.+...|||+..
T Consensus 649 NGaL~iGtLDGanvEi~e~vG------~~NgF~FG~-~~~ev~~l~~~~y~a~~~y~~~~-~~~~vvd~~~~g~fs~~~~ 720 (796)
T 1l5w_A 649 NGALTVGTLDGANVEIAEKVG------EENIFIFGH-TVEQVKAILAKGYDPVKWRKKDK-VLDAVLKELESGKYSDGDK 720 (796)
T ss_dssp TTCEEEECSCTTHHHHHHHHC------GGGSEECSC-CHHHHHHHHHHCCCHHHHHHHCH-HHHHHHHHHHHTTTTTTCT
T ss_pred cCCeeecCcCCeeeehhhccC------CCcEEEecC-CHHHHHHHHHcccCHHHHhhcCH-HHHHHHHHHHcCCCCCCcH
Confidence 999999888888777765421 479999976 777776 33333455555577 6888888888899999886
Q ss_pred HHHHHHHHHHHhc
Q 043397 583 AGKYMEIYNSIRV 595 (596)
Q Consensus 583 ~~~~~~iy~~l~~ 595 (596)
+.|.++|++++.
T Consensus 721 -~~y~~Ly~~L~~ 732 (796)
T 1l5w_A 721 -HAFDQMLHSIGK 732 (796)
T ss_dssp -TTTHHHHHHTST
T ss_pred -HHHHHHHHHHhc
Confidence 789999998863
No 27
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.94 E-value=1.9e-26 Score=212.49 Aligned_cols=160 Identities=12% Similarity=0.093 Sum_probs=139.8
Q ss_pred ccEEEEEecccccCCHHHHHHHHHHHHH-cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhC
Q 043397 406 VPLVVCITRLVAQKGLHLITHAIKRAEE-LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAA 484 (596)
Q Consensus 406 ~~~il~iGrl~~~KGi~~ll~A~~~l~~-~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~a 484 (596)
+++|+|+||+.++||++.+++|+..+.+ ++++|+|+|+ |+..+.++++++++++ +|+| |+++.+++..+|+.|
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~---g~~~~~~~~~~~~~~~--~v~~-g~~~~~~~~~~~~~a 75 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSKYKQDIVLLLKGK---GPDEKKIKLLAQKLGV--KAEF-GFVNSNELLEILKTC 75 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCTTGGGEEEEEECC---STTHHHHHHHHHHHTC--EEEC-CCCCHHHHHHHHTTC
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhccCCCeEEEEEeC---CccHHHHHHHHHHcCC--eEEE-eecCHHHHHHHHHhC
Confidence 4689999999999999999999999854 6899999999 8889999999999887 7999 999999999999999
Q ss_pred CEEEEcCCCCCCchHHHHHHhcCC-ceEE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCH
Q 043397 485 DIVLVPSIYEPCGLAQMIGMRYGA-VPVV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKP 562 (596)
Q Consensus 485 Di~l~PS~~E~~gl~~lEAma~G~-pvI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~ 562 (596)
|++++||..|++|++++|||++|+ |||+ ++.|+..+++.+ .+.++++.|+++++++|.++++ ++
T Consensus 76 dv~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~i~~l~~----~~ 141 (166)
T 3qhp_A 76 TLYVHAANVESEAIACLEAISVGIVPVIANSPLSATRQFALD----------ERSLFEPNNAKDLSAKIDWWLE----NK 141 (166)
T ss_dssp SEEEECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSS----------GGGEECTTCHHHHHHHHHHHHH----CH
T ss_pred CEEEECCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhccC----------CceEEcCCCHHHHHHHHHHHHh----CH
Confidence 999999999999999999999998 9999 578889999977 3448888999999999999999 99
Q ss_pred HHHHHHHHHHHH--hcCCHHHHHHH
Q 043397 563 EEWNRIVQKIME--NDNSWNNAAGK 585 (596)
Q Consensus 563 ~~~~~~~~~~~~--~~fs~~~~~~~ 585 (596)
+.++++++++.+ ++|||+.++++
T Consensus 142 ~~~~~~~~~~~~~~~~~s~~~~~~~ 166 (166)
T 3qhp_A 142 LERERMQNEYAKSALNYTLENSVIQ 166 (166)
T ss_dssp HHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHCChhhhhcC
Confidence 999999876654 78999998764
No 28
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.94 E-value=2.7e-25 Score=232.68 Aligned_cols=216 Identities=16% Similarity=0.035 Sum_probs=163.4
Q ss_pred cccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCC-CCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCC
Q 043397 322 VYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGI-DTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGL 400 (596)
Q Consensus 322 ~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGi-d~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l 400 (596)
+.+|.++++|+..++.+.+.| .+.+++.+++|++ |...+.+. +..+++++
T Consensus 145 ~~~~~~~~~s~~~~~~l~~~g-------~~~~ki~vi~n~~~d~~~~~~~--------------------~~~~~~~~-- 195 (376)
T 1v4v_A 145 VLTDLDFAPTPLAKANLLKEG-------KREEGILVTGQTGVDAVLLAAK--------------------LGRLPEGL-- 195 (376)
T ss_dssp HHCSEEEESSHHHHHHHHTTT-------CCGGGEEECCCHHHHHHHHHHH--------------------HCCCCTTC--
T ss_pred HHhceeeCCCHHHHHHHHHcC-------CCcceEEEECCchHHHHhhhhh--------------------hhHHHHhc--
Confidence 448999999999888876544 3457899999975 42111000 00111222
Q ss_pred CCCCCccEEEEEecccccCCHHHHHHHHHHHHH--cCCEEEEE-ecCCCCc-chHHHHHHHHHcCCCCcEEEEeccCHHH
Q 043397 401 KSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--LGGQMILL-GNSPVHW-VQKDFEDLANLHNKGTSTRILLMYSEEL 476 (596)
Q Consensus 401 ~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~~~~lvIv-G~~~~g~-~~~~l~~~~~~~~~~~~V~~~g~~~~~~ 476 (596)
. ++.++++++||+..+||++.+++|++++.+ ++++++++ |+ ++ ..+.++++++. .++|+|+|.++..+
T Consensus 196 ~--~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~lv~~~g~---~~~~~~~l~~~~~~---~~~v~~~g~~g~~~ 267 (376)
T 1v4v_A 196 P--EGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHL---NPVVREAVFPVLKG---VRNFVLLDPLEYGS 267 (376)
T ss_dssp C--SSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCS---CHHHHHHHHHHHTT---CTTEEEECCCCHHH
T ss_pred C--CCCEEEEEeCcccchHHHHHHHHHHHHHHhhCCCeEEEEECCC---CHHHHHHHHHHhcc---CCCEEEECCCCHHH
Confidence 1 344567889999888999999999999865 57898886 75 44 45666666532 46899999888888
Q ss_pred HHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEe-CCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHH
Q 043397 477 SHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVR-KTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAF 555 (596)
Q Consensus 477 l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s-~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll 555 (596)
+..+|+.||++|.|| + |+ ++|||++|+|+|++ +.||..+++.+ ++|++++. |+++|+++|.+++
T Consensus 268 ~~~~~~~ad~~v~~S--~--g~-~lEA~a~G~PvI~~~~~~~~~~~~~~---------g~g~lv~~-d~~~la~~i~~ll 332 (376)
T 1v4v_A 268 MAALMRASLLLVTDS--G--GL-QEEGAALGVPVVVLRNVTERPEGLKA---------GILKLAGT-DPEGVYRVVKGLL 332 (376)
T ss_dssp HHHHHHTEEEEEESC--H--HH-HHHHHHTTCCEEECSSSCSCHHHHHH---------TSEEECCS-CHHHHHHHHHHHH
T ss_pred HHHHHHhCcEEEECC--c--CH-HHHHHHcCCCEEeccCCCcchhhhcC---------CceEECCC-CHHHHHHHHHHHH
Confidence 999999999999998 2 44 88999999999997 67889998765 58999964 9999999999999
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 043397 556 RHFIDKPEEWNRIVQKIMENDNSWNNAAGKYMEIYNSIRV 595 (596)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~iy~~l~~ 595 (596)
+ |++.+++|++++ ..|.+...++++.+++.+++.
T Consensus 333 ~----d~~~~~~~~~~~--~~~~~~~~~~~i~~~i~~~~~ 366 (376)
T 1v4v_A 333 E----NPEELSRMRKAK--NPYGDGKAGLMVARGVAWRLG 366 (376)
T ss_dssp T----CHHHHHHHHHSC--CSSCCSCHHHHHHHHHHHHTT
T ss_pred h----ChHhhhhhcccC--CCCCCChHHHHHHHHHHHHhc
Confidence 8 999999988633 467777788888888877653
No 29
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.92 E-value=1.6e-24 Score=202.17 Aligned_cols=150 Identities=18% Similarity=0.259 Sum_probs=137.0
Q ss_pred CCccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHH--HcCCCCcEEEEeccCHHHHHHHH
Q 043397 404 GTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLAN--LHNKGTSTRILLMYSEELSHMLY 481 (596)
Q Consensus 404 ~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~--~~~~~~~V~~~g~~~~~~l~~~~ 481 (596)
.++++|+|+||+.+.||++.+++|+.++ ++++|+|+|. |...+.++++++ ++++.++|+|+|+++++++..+|
T Consensus 21 ~~~~~i~~~G~~~~~Kg~~~li~a~~~l--~~~~l~i~G~---~~~~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~ 95 (177)
T 2f9f_A 21 CYGDFWLSVNRIYPEKRIELQLEVFKKL--QDEKLYIVGW---FSKGDHAERYARKIMKIAPDNVKFLGSVSEEELIDLY 95 (177)
T ss_dssp CCCSCEEEECCSSGGGTHHHHHHHHHHC--TTSCEEEEBC---CCTTSTHHHHHHHHHHHSCTTEEEEESCCHHHHHHHH
T ss_pred CCCCEEEEEeccccccCHHHHHHHHHhC--CCcEEEEEec---CccHHHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHH
Confidence 6788999999999999999999999988 6899999999 777788888888 88888899999999999999999
Q ss_pred HhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCC
Q 043397 482 AAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDK 561 (596)
Q Consensus 482 a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~ 561 (596)
+.||++++||..|++|++++|||++|+|||+++.|+..+++.+ +.+|+++ +.|+++++++|.++++ +
T Consensus 96 ~~adi~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~--------~~~g~~~-~~d~~~l~~~i~~l~~----~ 162 (177)
T 2f9f_A 96 SRCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETVIN--------EKTGYLV-NADVNEIIDAMKKVSK----N 162 (177)
T ss_dssp HHCSEEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHCCB--------TTTEEEE-CSCHHHHHHHHHHHHH----C
T ss_pred HhCCEEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHhcC--------CCccEEe-CCCHHHHHHHHHHHHh----C
Confidence 9999999999999999999999999999999999999999988 6899999 8899999999999998 6
Q ss_pred HHH-HHHHHHH
Q 043397 562 PEE-WNRIVQK 571 (596)
Q Consensus 562 ~~~-~~~~~~~ 571 (596)
++. +++++++
T Consensus 163 ~~~~~~~~~~~ 173 (177)
T 2f9f_A 163 PDKFKKDCFRR 173 (177)
T ss_dssp TTTTHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 665 4444433
No 30
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.92 E-value=2.4e-23 Score=217.84 Aligned_cols=197 Identities=15% Similarity=0.075 Sum_probs=154.4
Q ss_pred hhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhc
Q 043397 319 GGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGL 398 (596)
Q Consensus 319 ~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l 398 (596)
..++.+|.++++|+..++.+.+.| .+ ++.+++|+. |.+...+ ++.
T Consensus 149 ~~~~~~d~ii~~S~~~~~~l~~~g-------~~--ki~vi~n~~----f~~~~~~---------------------~~~- 193 (374)
T 2xci_A 149 ILSKKFDLIIMRTQEDVEKFKTFG-------AK--RVFSCGNLK----FICQKGK---------------------GIK- 193 (374)
T ss_dssp HHHTTCSEEEESCHHHHHHHHTTT-------CC--SEEECCCGG----GCCCCCS---------------------CCC-
T ss_pred HHHHhCCEEEECCHHHHHHHHHcC-------CC--eEEEcCCCc----cCCCcCh---------------------hhh-
Confidence 345668999999999999876544 22 899999973 2211000 000
Q ss_pred CCCCCCCccEEEEEecccccCCHHHHHHHHHHHHH--cCCEEEEEecCCCCcch-HHHHHHHHHcCCC--------CcEE
Q 043397 399 GLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--LGGQMILLGNSPVHWVQ-KDFEDLANLHNKG--------TSTR 467 (596)
Q Consensus 399 ~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~~~~lvIvG~~~~g~~~-~~l~~~~~~~~~~--------~~V~ 467 (596)
-..+++++.|+ ..||++.+++|++++.+ ++++|+|+|+ |+.. +.++++++++++. .+|.
T Consensus 194 -----l~~~vi~~~~~--~~k~~~~ll~A~~~l~~~~p~~~lvivG~---g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~ 263 (374)
T 2xci_A 194 -----LKGEFIVAGSI--HTGEVEIILKAFKEIKKTYSSLKLILVPR---HIENAKIFEKKARDFGFKTSFFENLEGDVI 263 (374)
T ss_dssp -----CSSCEEEEEEE--CGGGHHHHHHHHHHHHTTCTTCEEEEEES---SGGGHHHHHHHHHHTTCCEEETTCCCSSEE
T ss_pred -----hcCCEEEEEeC--CCchHHHHHHHHHHHHhhCCCcEEEEECC---CHHHHHHHHHHHHHCCCceEEecCCCCcEE
Confidence 12256777765 46899999999999975 6899999998 8776 5899999988875 4688
Q ss_pred EEeccCHHHHHHHHHhCCEEEEcCCC-CCCchHHHHHHhcCCceEEe-CCCCccccccccCCCCCCCccceEEEeCCCHH
Q 043397 468 ILLMYSEELSHMLYAAADIVLVPSIY-EPCGLAQMIGMRYGAVPVVR-KTGGLADTVFDVDDPSNHEKANGFVFEGIDEG 545 (596)
Q Consensus 468 ~~g~~~~~~l~~~~a~aDi~l~PS~~-E~~gl~~lEAma~G~pvI~s-~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~ 545 (596)
+.|..++ +..+|+.||++++||.+ |++|++++||||||+|||++ +.++++|++++. ..+|+++.+.|++
T Consensus 264 ~~~~~~d--l~~~y~~aDv~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~~~~-------~~~G~l~~~~d~~ 334 (374)
T 2xci_A 264 LVDRFGI--LKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFL-------EKEGAGFEVKNET 334 (374)
T ss_dssp ECCSSSC--HHHHGGGEEEEEECSSSSSSCCCCCHHHHTTTCCEEECSCCTTSHHHHHHH-------HHTTCEEECCSHH
T ss_pred EECCHHH--HHHHHHhCCEEEECCcccCCCCcCHHHHHHhCCCEEECCCccChHHHHHHH-------HHCCCEEEeCCHH
Confidence 8787655 99999999999888765 67899999999999999985 889999988752 1478889889999
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043397 546 SLNWALDRAFRHFIDKPEEWNRIVQKIME 574 (596)
Q Consensus 546 ~la~~i~~ll~~~~~~~~~~~~~~~~~~~ 574 (596)
+|+++|.++++ | +.+++|++++.+
T Consensus 335 ~La~ai~~ll~----d-~~r~~mg~~ar~ 358 (374)
T 2xci_A 335 ELVTKLTELLS----V-KKEIKVEEKSRE 358 (374)
T ss_dssp HHHHHHHHHHH----S-CCCCCHHHHHHH
T ss_pred HHHHHHHHHHh----H-HHHHHHHHHHHH
Confidence 99999999999 8 888888877654
No 31
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=99.91 E-value=1.6e-24 Score=238.22 Aligned_cols=348 Identities=16% Similarity=0.141 Sum_probs=245.9
Q ss_pred CCcEEEEcCCccchHHH-HHHHHhh--------hccCCCCcEEEEEcCCCCCCc--chhhhhhhcC---------CCchh
Q 043397 235 QPDIIHVHEWQIGALPL-LYWDMYQ--------SLSLKKPRIVLTIHNMEHYGE--CRQEQLSKCG---------LDGSI 294 (596)
Q Consensus 235 ~pDVIh~~~~~~~~~~~-~~~~~~~--------~~~~~~~pvv~tiH~~~~~~~--~~~~~~~~~~---------~~~~~ 294 (596)
+||+||+|+||+++++. +++.++. +....+..+++|.|+..+++. ++...+...- +...+
T Consensus 320 ~p~viHlNDtHpal~i~ElmR~l~d~~~l~~d~A~~i~~~~~vfT~HTl~~eglE~wp~~l~~~lLPr~~~ii~~in~~f 399 (824)
T 2gj4_A 320 DKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPEALERWPVHLLETLLPRHLQIIYEINQRF 399 (824)
T ss_dssp HHEEEEEESSTTTTHHHHHHHHHHHTSCCCHHHHHHHHHHHEEEECCCCCGGGSCEEEHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCcEEEccCCchHhHHHHHHHHHHHhcCCCHHHHHHHhcCcEEEEeCCChHHHhhhchHHHHHHhCchHHHHHHHHHHHH
Confidence 58899999999998877 4433221 101134459999999999876 5544432210 00010
Q ss_pred hhhhhhhccc--------ccc-CCCcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCC
Q 043397 295 YASVEKAIDD--------RTI-GHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTV 365 (596)
Q Consensus 295 ~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~ 365 (596)
.......+.. ..+ ....+.++|.+.++..|+.|.+||+.+.+++...- +...+...+.++..|.||||+.
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~vnMa~lai~~S~~VNgVS~lH~e~ik~~~-f~~~~~~~p~k~~~iTNGI~~r 478 (824)
T 2gj4_A 400 LNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARIHSEILKKTI-FKDFYELEPHKFQNKTNGITPR 478 (824)
T ss_dssp HHHHHHHSTTCHHHHHHHCSEECSSSCEEEHHHHHHHTCSCEEESSHHHHHHHHHTT-THHHHHHCGGGEEECCCCBCTC
T ss_pred HHHHHHHcCCcHHHHHhhhhhhhcCCCcccHHHHHHHhcCceeeEcHHHHHHHhhHH-hHHHHHcChhhcccccCCcChh
Confidence 0000000000 000 11346789999999999999999999999986332 2344555678999999999999
Q ss_pred Cc----CCCCcCCCccc-----------------cCC-CCc-----hhhhhhHHH----HHhhcCCCCCCCccEEEEEec
Q 043397 366 IW----NPATDAFLPAK-----------------FHA-QKP-----EGKKICKYY----IQKGLGLKSEGTVPLVVCITR 414 (596)
Q Consensus 366 ~~----~p~~~~~~~~~-----------------~~~-~~~-----~~k~~~k~~----~~~~l~l~~~~~~~~il~iGr 414 (596)
.| +|..+..+... |.. ... +.|..+|.. +++++|+..+++.+.++++.|
T Consensus 479 rWl~~~NP~l~~lI~~~ig~~W~~~~~~l~~L~~y~~d~~~~~~~~~~K~~nK~~la~~l~~~~Gl~vdpd~l~~g~vkR 558 (824)
T 2gj4_A 479 RWLVLCNPGLAEIIAERIGEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKR 558 (824)
T ss_dssp CCCCCTCHHHHHHHHHHHCSGGGGCGGGGGGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESC
T ss_pred hhcccCCHhHHHHHHHhcCchhhhCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeec
Confidence 99 67655444422 443 222 456667776 888899988889999999999
Q ss_pred ccccCCHHHH-HHHHHHHH---H-c-----CCEEEEEecCCCCcchHH------HHHHHHHcCC----CC--cEEEEecc
Q 043397 415 LVAQKGLHLI-THAIKRAE---E-L-----GGQMILLGNSPVHWVQKD------FEDLANLHNK----GT--STRILLMY 472 (596)
Q Consensus 415 l~~~KGi~~l-l~A~~~l~---~-~-----~~~lvIvG~~~~g~~~~~------l~~~~~~~~~----~~--~V~~~g~~ 472 (596)
+..+||.+++ +..+.++. + + +++|++.|+. +..+... +..+++..+. .+ +|.|+..+
T Consensus 559 l~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~q~If~GKA-~P~y~~aK~iIkli~~va~~in~Dp~v~~~lKVvFl~nY 637 (824)
T 2gj4_A 559 IHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKA-APGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENY 637 (824)
T ss_dssp CCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEEEECCC-CTTCHHHHHHHHHHHHHHHHHTTCTTTGGGEEEEEETTC
T ss_pred chhhcchhhHHHHHHHHHHHHHhCCCCCCCCEEEEEEEeC-CHhHHHHHHHHHHHHHHHHHhccCcccCCceEEEEECCC
Confidence 9999999998 88888774 3 2 4699999983 2223333 5555655433 34 69999999
Q ss_pred CHHHHHHHHHhCCEEEEcCC--CCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHH
Q 043397 473 SEELSHMLYAAADIVLVPSI--YEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWA 550 (596)
Q Consensus 473 ~~~~l~~~~a~aDi~l~PS~--~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~ 550 (596)
+.+....++++||+++.||. +|+||+..|-||.+|+++|++--|.-.|+.+++. .+|||+|.. .++++ .+
T Consensus 638 dvslA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlDGanvEi~e~vG------~~Ngf~FG~-~~~ev-~~ 709 (824)
T 2gj4_A 638 RVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAG------EENFFIFGM-RVEDV-DR 709 (824)
T ss_dssp CHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTTHHHHHHHHC------GGGSEECSC-CHHHH-HH
T ss_pred CHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEecCccchhhhccC------CCCEEEeCC-cHHHH-HH
Confidence 99999999999999999999 8999999999999999999988787667664321 479999986 47777 55
Q ss_pred HH----HHHHhccCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 043397 551 LD----RAFRHFIDKPEEWNRIVQKIMENDNSWNNAAGKYMEIYNSIR 594 (596)
Q Consensus 551 i~----~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~iy~~l~ 594 (596)
+. +..+.|..++ .++++..+.+...|+|... +.|.++|++++
T Consensus 710 l~~~~~~a~~~Y~~~~-~l~~v~d~i~~g~fs~~~~-~~y~~ly~~l~ 755 (824)
T 2gj4_A 710 LDQRGYNAQEYYDRIP-ELRQIIEQLSSGFFSPKQP-DLFKDIVNMLM 755 (824)
T ss_dssp HHHHCCCHHHHHHHCH-HHHHHHHHHHHTTTCTTST-TTTHHHHHHHH
T ss_pred HHHcCCCHHHHhcCCH-HHHHHHHHHHhCCCCCCCh-HHHHHHHHHHH
Confidence 52 2344444344 5667677777789999887 78999999876
No 32
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.86 E-value=3.7e-20 Score=189.85 Aligned_cols=247 Identities=11% Similarity=-0.025 Sum_probs=170.1
Q ss_pred CCCCcEEEEcCCcc--chH-HHHHHHHhhhccCCCCcEEEEEcCCCCCCcchhhhhhhcCCCchhhhhhhhhccccccCC
Q 043397 233 GVQPDIIHVHEWQI--GAL-PLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGH 309 (596)
Q Consensus 233 ~~~pDVIh~~~~~~--~~~-~~~~~~~~~~~~~~~~pvv~tiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (596)
-.++|+|+++++.. ... ..++..+ +..++|+|+.+||.++.... ...
T Consensus 72 ~~~~DvIi~q~P~~~~~~~~~~~~~~l----k~~~~k~i~~ihDl~pl~~~----------~~~---------------- 121 (339)
T 3rhz_A 72 LRHGDVVIFQTPTWNTTEFDEKLMNKL----KLYDIKIVLFIHDVVPLMFS----------GNF---------------- 121 (339)
T ss_dssp CCTTCEEEEEECCSSCHHHHHHHHHHH----TTSSCEEEEEESCCHHHHCG----------GGG----------------
T ss_pred CCCCCEEEEeCCCcchhhHHHHHHHHH----HhcCCEEEEEecccHHhhCc----------cch----------------
Confidence 36899999986543 112 2223222 12489999999998752100 000
Q ss_pred CcccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhh
Q 043397 310 NPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKI 389 (596)
Q Consensus 310 ~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~ 389 (596)
-.+..++..++.||.|+++|+.+++.+.+.| .+..++.++++. |... +. +
T Consensus 122 --~~~~~E~~~y~~aD~Ii~~S~~~~~~l~~~G-------~~~~ki~~~~~~-~~~~--~~--~---------------- 171 (339)
T 3rhz_A 122 --YLMDRTIAYYNKADVVVAPSQKMIDKLRDFG-------MNVSKTVVQGMW-DHPT--QA--P---------------- 171 (339)
T ss_dssp --GGHHHHHHHHTTCSEEEESCHHHHHHHHHTT-------CCCSEEEECCSC-CCCC--CC--C----------------
T ss_pred --hhHHHHHHHHHHCCEEEECCHHHHHHHHHcC-------CCcCceeecCCC-CccC--cc--c----------------
Confidence 0112355668889999999999999987665 334566444332 2110 00 0
Q ss_pred hHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEE
Q 043397 390 CKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRIL 469 (596)
Q Consensus 390 ~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~ 469 (596)
...+ ..+++|+|+|+++....++.+ .++++|+|+|+ |+.. .+. ||+|+
T Consensus 172 --------~~~~--~~~~~i~yaG~l~k~~~L~~l--------~~~~~f~ivG~---G~~~----------~l~-nV~f~ 219 (339)
T 3rhz_A 172 --------MFPA--GLKREIHFPGNPERFSFVKEW--------KYDIPLKVYTW---QNVE----------LPQ-NVHKI 219 (339)
T ss_dssp --------CCCC--EEEEEEEECSCTTTCGGGGGC--------CCSSCEEEEES---CCCC----------CCT-TEEEE
T ss_pred --------cccc--CCCcEEEEeCCcchhhHHHhC--------CCCCeEEEEeC---Cccc----------CcC-CEEEe
Confidence 0011 356789999999854332221 36899999999 7654 133 89999
Q ss_pred eccCHHHHHHHHHhCCEEEEcCC-------CCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCC
Q 043397 470 LMYSEELSHMLYAAADIVLVPSI-------YEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGI 542 (596)
Q Consensus 470 g~~~~~~l~~~~a~aDi~l~PS~-------~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~ 542 (596)
|+++.++++.+++++|+.++... ...+|.+++||||+|+|||+++.+++.+++.+ +++|++++
T Consensus 220 G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~~~~~~v~~--------~~~G~~~~-- 289 (339)
T 3rhz_A 220 NYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIANQELIEN--------NGLGWIVK-- 289 (339)
T ss_dssp ECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTCTTTHHHHH--------HTCEEEES--
T ss_pred CCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccChhHHHHHHh--------CCeEEEeC--
Confidence 99999999999999999988621 13579999999999999999999999999998 78999997
Q ss_pred CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--hcCCHHHHHHHHH
Q 043397 543 DEGSLNWALDRAFRHFIDKPEEWNRIVQKIME--NDNSWNNAAGKYM 587 (596)
Q Consensus 543 d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~ 587 (596)
+.++++++|.++ .++.+++|++++.+ +.+++...+++.+
T Consensus 290 ~~~e~~~~i~~l------~~~~~~~m~~na~~~a~~~~~~~f~k~~l 330 (339)
T 3rhz_A 290 DVEEAIMKVKNV------NEDEYIELVKNVRSFNPILRKGFFTRRLL 330 (339)
T ss_dssp SHHHHHHHHHHC------CHHHHHHHHHHHHHHTHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHh------CHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 678888888765 34678889887765 4556665555544
No 33
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.84 E-value=1.8e-19 Score=189.82 Aligned_cols=221 Identities=15% Similarity=0.085 Sum_probs=157.6
Q ss_pred cccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCC-CCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcC-
Q 043397 322 VYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNG-IDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLG- 399 (596)
Q Consensus 322 ~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nG-id~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~- 399 (596)
+.+|.+++.|+..++.+...| .+++++.++.|+ +|...+.+.. .......+..+++++|
T Consensus 165 ~~a~~~~~~se~~~~~l~~~G-------~~~~ki~vvGn~~~d~~~~~~~~------------~~~~~~~~~~~r~~lg~ 225 (396)
T 3dzc_A 165 ALTQYHFAPTDTSRANLLQEN-------YNAENIFVTGNTVIDALLAVREK------------IHTDMDLQATLESQFPM 225 (396)
T ss_dssp HTCSEEEESSHHHHHHHHHTT-------CCGGGEEECCCHHHHHHHHHHHH------------HHHCHHHHHHHHHTCTT
T ss_pred HhcCEEECCCHHHHHHHHHcC-------CCcCcEEEECCcHHHHHHHhhhh------------cccchhhHHHHHHHhCc
Confidence 458999999999988876655 456789999985 4422111100 0000001356788888
Q ss_pred CCCCCCccE-EEEEeccc-ccCCHHHHHHHHHHHHH--cCCEEEEE-ecCCCCc-chHHHHHHHHHcCCCCcEEEEeccC
Q 043397 400 LKSEGTVPL-VVCITRLV-AQKGLHLITHAIKRAEE--LGGQMILL-GNSPVHW-VQKDFEDLANLHNKGTSTRILLMYS 473 (596)
Q Consensus 400 l~~~~~~~~-il~iGrl~-~~KGi~~ll~A~~~l~~--~~~~lvIv-G~~~~g~-~~~~l~~~~~~~~~~~~V~~~g~~~ 473 (596)
++ +++++ +++.+|.. ..|+++.+++|+.++.+ +++++++. |. ++ ..+.++++ .+..++|++.+.++
T Consensus 226 l~--~~~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~~~~~~v~~~g~---~~~~~~~l~~~---~~~~~~v~~~~~lg 297 (396)
T 3dzc_A 226 LD--ASKKLILVTGHRRESFGGGFERICQALITTAEQHPECQILYPVHL---NPNVREPVNKL---LKGVSNIVLIEPQQ 297 (396)
T ss_dssp CC--TTSEEEEEECSCBCCCTTHHHHHHHHHHHHHHHCTTEEEEEECCB---CHHHHHHHHHH---TTTCTTEEEECCCC
T ss_pred cC--CCCCEEEEEECCcccchhHHHHHHHHHHHHHHhCCCceEEEEeCC---ChHHHHHHHHH---HcCCCCEEEeCCCC
Confidence 44 34444 55565653 45889999999999876 67888885 54 32 23333332 34457899999999
Q ss_pred HHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEe-CCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHH
Q 043397 474 EELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVR-KTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALD 552 (596)
Q Consensus 474 ~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s-~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~ 552 (596)
..++..+|+.||++|.+| + |+ ++|||++|+|+|++ +.++.+|++++ +.++++.. |+++|+++|.
T Consensus 298 ~~~~~~l~~~ad~vv~~S---G-g~-~~EA~a~G~PvV~~~~~~~~~e~v~~---------G~~~lv~~-d~~~l~~ai~ 362 (396)
T 3dzc_A 298 YLPFVYLMDRAHIILTDS---G-GI-QEEAPSLGKPVLVMRETTERPEAVAA---------GTVKLVGT-NQQQICDALS 362 (396)
T ss_dssp HHHHHHHHHHCSEEEESC---S-GG-GTTGGGGTCCEEECCSSCSCHHHHHH---------TSEEECTT-CHHHHHHHHH
T ss_pred HHHHHHHHHhcCEEEECC---c-cH-HHHHHHcCCCEEEccCCCcchHHHHc---------CceEEcCC-CHHHHHHHHH
Confidence 888999999999999998 3 44 48999999999998 78888898876 46777765 8999999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043397 553 RAFRHFIDKPEEWNRIVQKIMENDNSWNNAAGKYMEIY 590 (596)
Q Consensus 553 ~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~iy 590 (596)
++++ |++.+++|++++. .|.....++++.++.
T Consensus 363 ~ll~----d~~~~~~m~~~~~--~~~~~~aa~ri~~~l 394 (396)
T 3dzc_A 363 LLLT----DPQAYQAMSQAHN--PYGDGKACQRIADIL 394 (396)
T ss_dssp HHHH----CHHHHHHHHTSCC--TTCCSCHHHHHHHHH
T ss_pred HHHc----CHHHHHHHhhccC--CCcCChHHHHHHHHH
Confidence 9999 9999998886542 465566666666554
No 34
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.84 E-value=1.4e-19 Score=191.62 Aligned_cols=161 Identities=10% Similarity=0.015 Sum_probs=126.8
Q ss_pred CCccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh
Q 043397 404 GTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA 483 (596)
Q Consensus 404 ~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~ 483 (596)
+...++++.|++. .++.+.+.++++.+.+.+.+++++++. +...+.++ .+.++|++.|+++ +..+|+.
T Consensus 241 ~~~~vlv~~G~~~-~~~~~~~~~~~~~l~~~~~~~~~~~g~--~~~~~~l~------~~~~~v~~~~~~~---~~~~l~~ 308 (412)
T 3otg_A 241 ARPLVYLTLGTSS-GGTVEVLRAAIDGLAGLDADVLVASGP--SLDVSGLG------EVPANVRLESWVP---QAALLPH 308 (412)
T ss_dssp TSCEEEEECTTTT-CSCHHHHHHHHHHHHTSSSEEEEECCS--SCCCTTCC------CCCTTEEEESCCC---HHHHGGG
T ss_pred CCCEEEEEcCCCC-cCcHHHHHHHHHHHHcCCCEEEEEECC--CCChhhhc------cCCCcEEEeCCCC---HHHHHhc
Confidence 3445678889986 788888888888887667888877651 22123222 2356899999994 7789999
Q ss_pred CCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEeCC--CHHHHHHHHHHHHHh
Q 043397 484 ADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFEGI--DEGSLNWALDRAFRH 557 (596)
Q Consensus 484 aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~~~--d~~~la~~i~~ll~~ 557 (596)
||++|.++ .+.+++|||++|+|+|+...++ ..+.+.+ .++|+++.+. |+++|+++|.++++
T Consensus 309 ad~~v~~~----g~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~--------~g~g~~~~~~~~~~~~l~~ai~~ll~- 375 (412)
T 3otg_A 309 VDLVVHHG----GSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQ--------AGAGDHLLPDNISPDSVSGAAKRLLA- 375 (412)
T ss_dssp CSEEEESC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHH--------HTSEEECCGGGCCHHHHHHHHHHHHH-
T ss_pred CcEEEECC----chHHHHHHHHhCCCEEecCCchhHHHHHHHHHH--------cCCEEecCcccCCHHHHHHHHHHHHh-
Confidence 99999764 3489999999999999976654 5677776 6799999877 89999999999999
Q ss_pred ccCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHH
Q 043397 558 FIDKPEEWNRIVQKIME--NDNSWNNAAGKYMEIYNS 592 (596)
Q Consensus 558 ~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~iy~~ 592 (596)
|++.+++|++.+.+ ..++++++++.+.+++.+
T Consensus 376 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 409 (412)
T 3otg_A 376 ---EESYRAGARAVAAEIAAMPGPDEVVRLLPGFASR 409 (412)
T ss_dssp ---CHHHHHHHHHHHHHHHHSCCHHHHHTTHHHHHC-
T ss_pred ---CHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 99998888865544 678999999999998865
No 35
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.83 E-value=6.4e-19 Score=185.84 Aligned_cols=217 Identities=12% Similarity=0.049 Sum_probs=154.0
Q ss_pred ccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCC-CCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCC
Q 043397 323 YSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNG-IDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLK 401 (596)
Q Consensus 323 ~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nG-id~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~ 401 (596)
.+|.+++.|+..++.+.+.| .++++++++.|. +|...+.+... .+...++++ +
T Consensus 169 ~a~~~~~~se~~~~~l~~~G-------i~~~~i~vvGn~~~D~~~~~~~~~-----------------~~~~~~~~l--~ 222 (403)
T 3ot5_A 169 MADIHFSPTKQAKENLLAEG-------KDPATIFVTGNTAIDALKTTVQKD-----------------YHHPILENL--G 222 (403)
T ss_dssp HCSEEEESSHHHHHHHHHTT-------CCGGGEEECCCHHHHHHHHHSCTT-----------------CCCHHHHSC--T
T ss_pred hcCEEECCCHHHHHHHHHcC-------CCcccEEEeCCchHHHHHhhhhhh-----------------cchHHHHhc--c
Confidence 37999999999999987655 456789999884 55432222100 001223333 2
Q ss_pred CCCCccEEEEEecccc-cCCHHHHHHHHHHHHH--cCCEEEEEecCCCCc-chHHHHHHHHHcCCCCcEEEEeccCHHHH
Q 043397 402 SEGTVPLVVCITRLVA-QKGLHLITHAIKRAEE--LGGQMILLGNSPVHW-VQKDFEDLANLHNKGTSTRILLMYSEELS 477 (596)
Q Consensus 402 ~~~~~~~il~iGrl~~-~KGi~~ll~A~~~l~~--~~~~lvIvG~~~~g~-~~~~l~~~~~~~~~~~~V~~~g~~~~~~l 477 (596)
++..++++.||... .|+++.+++|+.++.+ +++++++.+.. ++ ..+.+++. ++..++|++++.++..++
T Consensus 223 --~~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~~~~~~~~v~~~~~--~~~~~~~l~~~---~~~~~~v~l~~~l~~~~~ 295 (403)
T 3ot5_A 223 --DNRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHL--NPAVREKAMAI---LGGHERIHLIEPLDAIDF 295 (403)
T ss_dssp --TCEEEEECCCCHHHHTTHHHHHHHHHHHHHHHCTTEEEEEECCS--CHHHHHHHHHH---HTTCTTEEEECCCCHHHH
T ss_pred --CCCEEEEEeCcccccCcHHHHHHHHHHHHHHhCCCceEEEecCC--CHHHHHHHHHH---hCCCCCEEEeCCCCHHHH
Confidence 44556677787644 4789999999999875 67888887431 32 23333332 344578999999998899
Q ss_pred HHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEe-CCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 478 HMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVR-KTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 478 ~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s-~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
..+|+.||+++.+| |.+.+||+++|+|+|+. +.|+.++.++. ++|+++.+ |++++++++.++++
T Consensus 296 ~~l~~~ad~vv~~S-----Gg~~~EA~a~g~PvV~~~~~~~~~e~v~~---------g~~~lv~~-d~~~l~~ai~~ll~ 360 (403)
T 3ot5_A 296 HNFLRKSYLVFTDS-----GGVQEEAPGMGVPVLVLRDTTERPEGIEA---------GTLKLIGT-NKENLIKEALDLLD 360 (403)
T ss_dssp HHHHHHEEEEEECC-----HHHHHHGGGTTCCEEECCSSCSCHHHHHH---------TSEEECCS-CHHHHHHHHHHHHH
T ss_pred HHHHHhcCEEEECC-----ccHHHHHHHhCCCEEEecCCCcchhheeC---------CcEEEcCC-CHHHHHHHHHHHHc
Confidence 99999999999887 44559999999999998 78888888865 58988876 99999999999999
Q ss_pred hccCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 043397 557 HFIDKPEEWNRIVQKIMENDNSWNNAAGKYMEIYNSI 593 (596)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~iy~~l 593 (596)
|++.+++|++++. .|.....+++..+++.+.
T Consensus 361 ----~~~~~~~m~~~~~--~~g~~~aa~rI~~~l~~~ 391 (403)
T 3ot5_A 361 ----NKESHDKMAQAAN--PYGDGFAANRILAAIKSH 391 (403)
T ss_dssp ----CHHHHHHHHHSCC--TTCCSCHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHhhcC--cccCCcHHHHHHHHHHHH
Confidence 9999988876432 344444444444444443
No 36
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.80 E-value=2.2e-17 Score=172.00 Aligned_cols=163 Identities=13% Similarity=0.097 Sum_probs=114.8
Q ss_pred CCcc-EEEEEecccccCCHHHHHHHHHHHHH-cCCEEEE-EecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHH
Q 043397 404 GTVP-LVVCITRLVAQKGLHLITHAIKRAEE-LGGQMIL-LGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHML 480 (596)
Q Consensus 404 ~~~~-~il~iGrl~~~KGi~~ll~A~~~l~~-~~~~lvI-vG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~ 480 (596)
++++ ++++.|++...+..+.+.+++..+.. .+.++++ +|. + ..+.+.+..++.+. ++.+.+++++ +.++
T Consensus 178 ~~~~~ilv~gGs~g~~~~~~~~~~al~~l~~~~~~~vi~~~G~---~-~~~~~~~~~~~~~~--~~~v~~f~~d--m~~~ 249 (365)
T 3s2u_A 178 GRRVNLLVLGGSLGAEPLNKLLPEALAQVPLEIRPAIRHQAGR---Q-HAEITAERYRTVAV--EADVAPFISD--MAAA 249 (365)
T ss_dssp TSCCEEEECCTTTTCSHHHHHHHHHHHTSCTTTCCEEEEECCT---T-THHHHHHHHHHTTC--CCEEESCCSC--HHHH
T ss_pred CCCcEEEEECCcCCccccchhhHHHHHhcccccceEEEEecCc---c-ccccccceeccccc--ccccccchhh--hhhh
Confidence 4444 45566788888888888999887754 3556554 444 3 34455555555543 6888999987 9999
Q ss_pred HHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCcc--------ccccccCCCCCCCccceEEEeCC--CHHHHHHH
Q 043397 481 YAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLA--------DTVFDVDDPSNHEKANGFVFEGI--DEGSLNWA 550 (596)
Q Consensus 481 ~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~--------e~i~~~~~~~~~~~~~G~lv~~~--d~~~la~~ 550 (596)
|++||++|.- +.++++.|+|++|+|+|....+... +.+.+ .+.|++++.. |++.|+++
T Consensus 250 l~~aDlvI~r----aG~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~--------~G~a~~l~~~~~~~~~L~~~ 317 (365)
T 3s2u_A 250 YAWADLVICR----AGALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVR--------SGAGRLLPQKSTGAAELAAQ 317 (365)
T ss_dssp HHHCSEEEEC----CCHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHT--------TTSEEECCTTTCCHHHHHHH
T ss_pred hccceEEEec----CCcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHH--------CCCEEEeecCCCCHHHHHHH
Confidence 9999999964 3478999999999999987655422 23444 4678888754 48899999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 043397 551 LDRAFRHFIDKPEEWNRIVQKIME--NDNSWNNAAGKYMEIY 590 (596)
Q Consensus 551 i~~ll~~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~iy 590 (596)
|.++++ ||+.+++|++++.+ .....+++++.++++.
T Consensus 318 i~~ll~----d~~~~~~m~~~a~~~~~~~aa~~ia~~i~~la 355 (365)
T 3s2u_A 318 LSEVLM----HPETLRSMADQARSLAKPEATRTVVDACLEVA 355 (365)
T ss_dssp HHHHHH----CTHHHHHHHHHHHHTCCTTHHHHHHHHHHHHC
T ss_pred HHHHHC----CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 999999 99999999988876 3344445555544443
No 37
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.76 E-value=2e-16 Score=168.41 Aligned_cols=160 Identities=10% Similarity=0.042 Sum_probs=118.4
Q ss_pred CCccEEEEEecccccCCHHHHHHHHHHHHH-cCCEE-EEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHH
Q 043397 404 GTVPLVVCITRLVAQKGLHLITHAIKRAEE-LGGQM-ILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLY 481 (596)
Q Consensus 404 ~~~~~il~iGrl~~~KGi~~ll~A~~~l~~-~~~~l-vIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~ 481 (596)
++.++++++|++. .++.+.+.++++.+.+ +++++ +++|+ +...+.++ .+.++|.+.|++++. .+|
T Consensus 231 ~~~~v~v~~Gs~~-~~~~~~~~~~~~~l~~~~~~~~~~~~G~---~~~~~~l~------~~~~~v~~~~~~~~~---~~l 297 (430)
T 2iyf_A 231 AEKVVLVSLGSAF-TKQPAFYRECVRAFGNLPGWHLVLQIGR---KVTPAELG------ELPDNVEVHDWVPQL---AIL 297 (430)
T ss_dssp CSEEEEEECTTTC-C-CHHHHHHHHHHHTTCTTEEEEEECC------CGGGGC------SCCTTEEEESSCCHH---HHH
T ss_pred CCCeEEEEcCCCC-CCcHHHHHHHHHHHhcCCCeEEEEEeCC---CCChHHhc------cCCCCeEEEecCCHH---HHh
Confidence 3456788999998 6666666666666655 47787 46787 54433332 234689999999984 689
Q ss_pred HhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEeCC--CHHHHHHHHHHHH
Q 043397 482 AAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFEGI--DEGSLNWALDRAF 555 (596)
Q Consensus 482 a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~~~--d~~~la~~i~~ll 555 (596)
+.||++|..+ .+.+++|||++|+|+|+...++ ..+.+.+ .+.|+.++.. |+++|+++|.+++
T Consensus 298 ~~ad~~v~~~----G~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~--------~g~g~~~~~~~~~~~~l~~~i~~ll 365 (430)
T 2iyf_A 298 RQADLFVTHA----GAGGSQEGLATATPMIAVPQAVDQFGNADMLQG--------LGVARKLATEEATADLLRETALALV 365 (430)
T ss_dssp TTCSEEEECC----CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHH--------TTSEEECCCC-CCHHHHHHHHHHHH
T ss_pred hccCEEEECC----CccHHHHHHHhCCCEEECCCccchHHHHHHHHH--------cCCEEEcCCCCCCHHHHHHHHHHHH
Confidence 9999999753 3479999999999999998765 3555655 5789999876 8899999999999
Q ss_pred HhccCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHH
Q 043397 556 RHFIDKPEEWNRIVQKIME--NDNSWNNAAGKYMEIYNS 592 (596)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~iy~~ 592 (596)
+ |++.++++++.+.+ ..++++++++.+.+++++
T Consensus 366 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 400 (430)
T 2iyf_A 366 D----DPEVARRLRRIQAEMAQEGGTRRAADLIEAELPA 400 (430)
T ss_dssp H----CHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSCC
T ss_pred c----CHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhc
Confidence 8 88888877754433 567999999988877654
No 38
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.75 E-value=1.8e-17 Score=174.67 Aligned_cols=153 Identities=10% Similarity=-0.003 Sum_probs=103.5
Q ss_pred CCccEEEEEecccccC----------CHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccC
Q 043397 404 GTVPLVVCITRLVAQK----------GLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYS 473 (596)
Q Consensus 404 ~~~~~il~iGrl~~~K----------Gi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~ 473 (596)
...++++++|++...| .++.+++++.+ .+++++++++ +...+.++ .+.++|++.|+++
T Consensus 226 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~~v~~~~---~~~~~~l~------~~~~~v~~~~~~~ 293 (398)
T 4fzr_A 226 KQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPK---LGFEVVVAVS---DKLAQTLQ------PLPEGVLAAGQFP 293 (398)
T ss_dssp SSCEEECC----------------CCSHHHHHHHGGG---GTCEEEECCC---C--------------CCTTEEEESCCC
T ss_pred CCCEEEEEccCcccccccccccchHHHHHHHHHHHHh---CCCEEEEEeC---Ccchhhhc------cCCCcEEEeCcCC
Confidence 3456778889996554 45555655544 4789999887 54333333 2356899999996
Q ss_pred HHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCC----CccccccccCCCCCCCccceEEEeCC--CHHHH
Q 043397 474 EELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTG----GLADTVFDVDDPSNHEKANGFVFEGI--DEGSL 547 (596)
Q Consensus 474 ~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~g----g~~e~i~~~~~~~~~~~~~G~lv~~~--d~~~l 547 (596)
...+++.||++|. .+.+.+++|||++|+|+|+...+ +..+.+.+ .+.|+++++. |+++|
T Consensus 294 ---~~~ll~~ad~~v~----~gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~--------~g~g~~~~~~~~~~~~l 358 (398)
T 4fzr_A 294 ---LSAIMPACDVVVH----HGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHA--------AGAGVEVPWEQAGVESV 358 (398)
T ss_dssp ---HHHHGGGCSEEEE----CCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHH--------TTSEEECC-------CH
T ss_pred ---HHHHHhhCCEEEe----cCCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHH--------cCCEEecCcccCCHHHH
Confidence 4678999999995 45678999999999999995443 56666766 6899999876 78999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH--hcCCHHHHHHHHH
Q 043397 548 NWALDRAFRHFIDKPEEWNRIVQKIME--NDNSWNNAAGKYM 587 (596)
Q Consensus 548 a~~i~~ll~~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~ 587 (596)
+++|.++++ |++.++++++.+.+ ...+++++++.+.
T Consensus 359 ~~ai~~ll~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 396 (398)
T 4fzr_A 359 LAACARIRD----DSSYVGNARRLAAEMATLPTPADIVRLIE 396 (398)
T ss_dssp HHHHHHHHH----CTHHHHHHHHHHHHHTTSCCHHHHHHHHT
T ss_pred HHHHHHHHh----CHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 999999999 88888888865544 7889999888764
No 39
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.72 E-value=5e-16 Score=163.58 Aligned_cols=154 Identities=14% Similarity=0.091 Sum_probs=115.2
Q ss_pred CccEEEEEeccccc-CCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh
Q 043397 405 TVPLVVCITRLVAQ-KGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA 483 (596)
Q Consensus 405 ~~~~il~iGrl~~~-KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~ 483 (596)
..++++++|++... ++.+.+.++++.+.+.+++++++|+ +...+.++ ++.++|++.|+++ ...+++.
T Consensus 232 ~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~g---~~~~~~l~------~~~~~v~~~~~~~---~~~ll~~ 299 (398)
T 3oti_A 232 RPEVAITMGTIELQAFGIGAVEPIIAAAGEVDADFVLALG---DLDISPLG------TLPRNVRAVGWTP---LHTLLRT 299 (398)
T ss_dssp SCEEEECCTTTHHHHHCGGGHHHHHHHHHTSSSEEEEECT---TSCCGGGC------SCCTTEEEESSCC---HHHHHTT
T ss_pred CCEEEEEcCCCccccCcHHHHHHHHHHHHcCCCEEEEEEC---CcChhhhc------cCCCcEEEEccCC---HHHHHhh
Confidence 45677889999665 4666666666666556889999987 44333222 3356899999995 4668999
Q ss_pred CCEEEEcCCCCCCchHHHHHHhcCCceEE----eCCCCcc--ccccccCCCCCCCccceEEEeCC--CHHHHHHHHHHHH
Q 043397 484 ADIVLVPSIYEPCGLAQMIGMRYGAVPVV----RKTGGLA--DTVFDVDDPSNHEKANGFVFEGI--DEGSLNWALDRAF 555 (596)
Q Consensus 484 aDi~l~PS~~E~~gl~~lEAma~G~pvI~----s~~gg~~--e~i~~~~~~~~~~~~~G~lv~~~--d~~~la~~i~~ll 555 (596)
||++|.. +.+.+++|||++|+|+|+ .+..+.. +.+.+ .+.|+.+++. +++.++ +++
T Consensus 300 ad~~v~~----~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~--------~g~g~~~~~~~~~~~~l~----~ll 363 (398)
T 3oti_A 300 CTAVVHH----GGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSR--------RGIGLVSTSDKVDADLLR----RLI 363 (398)
T ss_dssp CSEEEEC----CCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHH--------HTSEEECCGGGCCHHHHH----HHH
T ss_pred CCEEEEC----CCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHH--------CCCEEeeCCCCCCHHHHH----HHH
Confidence 9999953 566799999999999999 5556777 88877 6899999764 444444 788
Q ss_pred HhccCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 043397 556 RHFIDKPEEWNRIVQKIME--NDNSWNNAAGKYMEIY 590 (596)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~iy 590 (596)
+ |++.++++++.+.+ ...+++++++.+.++.
T Consensus 364 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 364 G----DESLRTAAREVREEMVALPTPAETVRRIVERI 396 (398)
T ss_dssp H----CHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred c----CHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 7 89888888755443 7899999998887764
No 40
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.70 E-value=4.5e-15 Score=156.07 Aligned_cols=161 Identities=12% Similarity=0.063 Sum_probs=115.5
Q ss_pred CCccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEE-EecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH
Q 043397 404 GTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMIL-LGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA 482 (596)
Q Consensus 404 ~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvI-vG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a 482 (596)
....++++.|+....+ .+.+..+++.+.+.++++++ +|+ +...+.++ .+.++|++.+++++. .+++
T Consensus 230 ~~~~v~v~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~------~~~~~v~~~~~~~~~---~ll~ 296 (402)
T 3ia7_A 230 DAPVLLVSLGNQFNEH-PEFFRACAQAFADTPWHVVMAIGG---FLDPAVLG------PLPPNVEAHQWIPFH---SVLA 296 (402)
T ss_dssp TCCEEEEECCSCSSCC-HHHHHHHHHHHTTSSCEEEEECCT---TSCGGGGC------SCCTTEEEESCCCHH---HHHT
T ss_pred CCCEEEEECCCCCcch-HHHHHHHHHHHhcCCcEEEEEeCC---cCChhhhC------CCCCcEEEecCCCHH---HHHh
Confidence 3456678889987655 23444444444444577766 555 43333222 135689999999984 8999
Q ss_pred hCCEEEEcCCCCCCchHHHHHHhcCCceEEeCC-----CCccccccccCCCCCCCccceEEEeCC--CHHHHHHHHHHHH
Q 043397 483 AADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKT-----GGLADTVFDVDDPSNHEKANGFVFEGI--DEGSLNWALDRAF 555 (596)
Q Consensus 483 ~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~-----gg~~e~i~~~~~~~~~~~~~G~lv~~~--d~~~la~~i~~ll 555 (596)
.||++|..+ ...+++|||++|+|+|+... .+..+.+.+ .+.|..+... |+++|+++|.+++
T Consensus 297 ~ad~~v~~~----G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~--------~g~g~~~~~~~~~~~~l~~~~~~ll 364 (402)
T 3ia7_A 297 HARACLTHG----TTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIE--------LGLGSVLRPDQLEPASIREAVERLA 364 (402)
T ss_dssp TEEEEEECC----CHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHH--------TTSEEECCGGGCSHHHHHHHHHHHH
T ss_pred hCCEEEECC----CHHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHH--------cCCEEEccCCCCCHHHHHHHHHHHH
Confidence 999999763 34788999999999997544 245555665 6789988765 8999999999999
Q ss_pred HhccCCHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHH
Q 043397 556 RHFIDKPEEWNRIVQKIM--ENDNSWNNAAGKYMEIYNSI 593 (596)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~--~~~fs~~~~~~~~~~iy~~l 593 (596)
+ |++.++++++.+. ....+++++++.+.+++++.
T Consensus 365 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 400 (402)
T 3ia7_A 365 A----DSAVRERVRRMQRDILSSGGPARAADEVEAYLGRV 400 (402)
T ss_dssp H----CHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred c----CHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhhc
Confidence 9 8888888775443 36789999999998887653
No 41
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.68 E-value=4.7e-16 Score=163.24 Aligned_cols=159 Identities=11% Similarity=0.071 Sum_probs=117.0
Q ss_pred CccEEEEEecccccCCH-HHHHHHHHHHHH-cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH
Q 043397 405 TVPLVVCITRLVAQKGL-HLITHAIKRAEE-LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA 482 (596)
Q Consensus 405 ~~~~il~iGrl~~~KGi-~~ll~A~~~l~~-~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a 482 (596)
...++++.|++...|+. ..+++++.+..+ ++++++++|+ +...+.++ +..++|++.++++..+ +++
T Consensus 218 ~~~vlv~~G~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~~---~~~~~~l~------~~~~~v~~~~~~~~~~---ll~ 285 (391)
T 3tsa_A 218 ARRVCICMGRMVLNATGPAPLLRAVAAATELPGVEAVIAVP---PEHRALLT------DLPDNARIAESVPLNL---FLR 285 (391)
T ss_dssp SEEEEEECCHHHHHHHCSHHHHHHHHHHHTSTTEEEEEECC---GGGGGGCT------TCCTTEEECCSCCGGG---TGG
T ss_pred CCEEEEEcCCCCCcccchHHHHHHHHHhccCCCeEEEEEEC---Ccchhhcc------cCCCCEEEeccCCHHH---HHh
Confidence 44567778998775544 666666655532 4789999987 54333332 2356899999998744 569
Q ss_pred hCCEEEEcCCCCCCchHHHHHHhcCCceEEeCC----CCccccccccCCCCCCCccceEEEeC----CCHHHHHHHHHHH
Q 043397 483 AADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKT----GGLADTVFDVDDPSNHEKANGFVFEG----IDEGSLNWALDRA 554 (596)
Q Consensus 483 ~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~----gg~~e~i~~~~~~~~~~~~~G~lv~~----~d~~~la~~i~~l 554 (596)
.||++|. ++.+.+++|||++|+|+|+... .+..+.+.+ .+.|+++.+ .|+++|+++|.++
T Consensus 286 ~ad~~v~----~~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~--------~g~g~~~~~~~~~~~~~~l~~ai~~l 353 (391)
T 3tsa_A 286 TCELVIC----AGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAA--------AGAGICLPDEQAQSDHEQFTDSIATV 353 (391)
T ss_dssp GCSEEEE----CCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHH--------TTSEEECCSHHHHTCHHHHHHHHHHH
T ss_pred hCCEEEe----CCCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHH--------cCCEEecCcccccCCHHHHHHHHHHH
Confidence 9999995 3556799999999999999544 334555666 678999987 6899999999999
Q ss_pred HHhccCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 043397 555 FRHFIDKPEEWNRIVQKIME--NDNSWNNAAGKYMEIYN 591 (596)
Q Consensus 555 l~~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~iy~ 591 (596)
++ |++.++++++.+.+ ...+++++++.+.++..
T Consensus 354 l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 354 LG----DTGFAAAAIKLSDEITAMPHPAALVRTLENTAA 388 (391)
T ss_dssp HT----CTHHHHHHHHHHHHHHTSCCHHHHHHHHHHC--
T ss_pred Hc----CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 98 88888888754433 67899999988877654
No 42
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.68 E-value=9.5e-15 Score=154.53 Aligned_cols=160 Identities=13% Similarity=0.067 Sum_probs=112.4
Q ss_pred CCccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEE-EecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH
Q 043397 404 GTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMIL-LGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA 482 (596)
Q Consensus 404 ~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvI-vG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a 482 (596)
....++++.|+...... +.+..+++.+.+.++++++ +|. +...+.++ .+.++|++.++++.. .+++
T Consensus 246 ~~~~v~v~~Gs~~~~~~-~~~~~~~~al~~~~~~~v~~~g~---~~~~~~l~------~~~~~v~~~~~~~~~---~ll~ 312 (415)
T 3rsc_A 246 DLPVVLVSLGTTFNDRP-GFFRDCARAFDGQPWHVVMTLGG---QVDPAALG------DLPPNVEAHRWVPHV---KVLE 312 (415)
T ss_dssp CCCEEEEECTTTSCCCH-HHHHHHHHHHTTSSCEEEEECTT---TSCGGGGC------CCCTTEEEESCCCHH---HHHH
T ss_pred CCCEEEEECCCCCCChH-HHHHHHHHHHhcCCcEEEEEeCC---CCChHHhc------CCCCcEEEEecCCHH---HHHh
Confidence 34566788898854432 3333333434334588877 565 43333322 235689999999984 7899
Q ss_pred hCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCC----CccccccccCCCCCCCccceEEEeCC--CHHHHHHHHHHHHH
Q 043397 483 AADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTG----GLADTVFDVDDPSNHEKANGFVFEGI--DEGSLNWALDRAFR 556 (596)
Q Consensus 483 ~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~g----g~~e~i~~~~~~~~~~~~~G~lv~~~--d~~~la~~i~~ll~ 556 (596)
.||++|.. +...+++|||++|+|+|+.... ...+.+.+ .+.|..+... ++++|+++|.++++
T Consensus 313 ~ad~~v~~----~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~--------~g~g~~~~~~~~~~~~l~~~i~~ll~ 380 (415)
T 3rsc_A 313 QATVCVTH----GGMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQ--------LGLGAVLPGEKADGDTLLAAVGAVAA 380 (415)
T ss_dssp HEEEEEES----CCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHH--------HTCEEECCGGGCCHHHHHHHHHHHHT
T ss_pred hCCEEEEC----CcHHHHHHHHHhCCCEEEeCCcchHHHHHHHHHH--------cCCEEEcccCCCCHHHHHHHHHHHHc
Confidence 99999976 3346899999999999995433 34555555 5788888765 78999999999998
Q ss_pred hccCCHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHH
Q 043397 557 HFIDKPEEWNRIVQKIM--ENDNSWNNAAGKYMEIYNS 592 (596)
Q Consensus 557 ~~~~~~~~~~~~~~~~~--~~~fs~~~~~~~~~~iy~~ 592 (596)
|++.++++.+.+. .....++++++.+.+++.+
T Consensus 381 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 414 (415)
T 3rsc_A 381 ----DPALLARVEAMRGHVRRAGGAARAADAVEAYLAR 414 (415)
T ss_dssp ----CHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Confidence 8888887765433 3678888999888887654
No 43
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.59 E-value=1.6e-13 Score=143.48 Aligned_cols=154 Identities=12% Similarity=0.072 Sum_probs=112.9
Q ss_pred CccEEEEEeccccc-------CCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHH
Q 043397 405 TVPLVVCITRLVAQ-------KGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELS 477 (596)
Q Consensus 405 ~~~~il~iGrl~~~-------KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l 477 (596)
...++++.|++... +.++.+++++.++ +++++++++ +...+.++. +.++|.+ |+++.
T Consensus 210 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~---~~~~~~~~g---~~~~~~l~~------~~~~v~~-~~~~~--- 273 (384)
T 2p6p_A 210 RQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRW---DVELIVAAP---DTVAEALRA------EVPQARV-GWTPL--- 273 (384)
T ss_dssp SCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTT---TCEEEEECC---HHHHHHHHH------HCTTSEE-ECCCH---
T ss_pred CCEEEEECCCCCccccccccHHHHHHHHHHHhcC---CcEEEEEeC---CCCHHhhCC------CCCceEE-cCCCH---
Confidence 35578899999875 5677777777653 788888765 333333322 2468999 99975
Q ss_pred HHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEeCC--CHHHHHHHH
Q 043397 478 HMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFEGI--DEGSLNWAL 551 (596)
Q Consensus 478 ~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~~~--d~~~la~~i 551 (596)
.++|++||++|.. +.+.+++|||++|+|+|+...++ ..+.+.+ .+.|+.+++. ++++++++|
T Consensus 274 ~~~l~~~d~~v~~----~G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~--------~g~g~~~~~~~~~~~~l~~~i 341 (384)
T 2p6p_A 274 DVVAPTCDLLVHH----AGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVAD--------YGAAIALLPGEDSTEAIADSC 341 (384)
T ss_dssp HHHGGGCSEEEEC----SCTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHH--------HTSEEECCTTCCCHHHHHHHH
T ss_pred HHHHhhCCEEEeC----CcHHHHHHHHHhCCCEEEccCcccchHHHHHHHH--------CCCeEecCcCCCCHHHHHHHH
Confidence 4578999999986 44579999999999999987754 5555655 5789988754 789999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 043397 552 DRAFRHFIDKPEEWNRIVQKIME--NDNSWNNAAGKYMEIY 590 (596)
Q Consensus 552 ~~ll~~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~~iy 590 (596)
.++++ |++.++++++.+.+ ..-..+++++.+.++.
T Consensus 342 ~~ll~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 378 (384)
T 2p6p_A 342 QELQA----KDTYARRAQDLSREISGMPLPATVVTALEQLA 378 (384)
T ss_dssp HHHHH----CHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHc----CHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 99998 88888777754433 4556777776665543
No 44
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.59 E-value=1.7e-14 Score=150.75 Aligned_cols=216 Identities=12% Similarity=-0.021 Sum_probs=148.5
Q ss_pred ccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCC-CCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCC
Q 043397 323 YSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNG-IDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLK 401 (596)
Q Consensus 323 ~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nG-id~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~ 401 (596)
.+|.+++.|+..++.+.+.| .++++++++.|. +|...+. .....+..+++++|++
T Consensus 146 ~a~~~~~~te~~~~~l~~~G-------~~~~~I~vtGnp~~D~~~~~-----------------~~~~~~~~~~~~lgl~ 201 (385)
T 4hwg_A 146 ISDVNITLTEHARRYLIAEG-------LPAELTFKSGSHMPEVLDRF-----------------MPKILKSDILDKLSLT 201 (385)
T ss_dssp HCSEEEESSHHHHHHHHHTT-------CCGGGEEECCCSHHHHHHHH-----------------HHHHHHCCHHHHTTCC
T ss_pred hhceeecCCHHHHHHHHHcC-------CCcCcEEEECCchHHHHHHh-----------------hhhcchhHHHHHcCCC
Confidence 47899999999999887655 456789999884 3421110 0012344567888885
Q ss_pred CCCCccEEEEEeccc---ccCCHHHHHHHHHHHHHc-CCEEEEEecCCCCcchHHHHHHHHHc-C---CCCcEEEEeccC
Q 043397 402 SEGTVPLVVCITRLV---AQKGLHLITHAIKRAEEL-GGQMILLGNSPVHWVQKDFEDLANLH-N---KGTSTRILLMYS 473 (596)
Q Consensus 402 ~~~~~~~il~iGrl~---~~KGi~~ll~A~~~l~~~-~~~lvIvG~~~~g~~~~~l~~~~~~~-~---~~~~V~~~g~~~ 473 (596)
+++.++++.+|.. ..|+++.+++|+.++.+. ++++++... . ..++.++++ + ..++|.+.+.++
T Consensus 202 --~~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~~~~vv~p~~---p----~~~~~l~~~~~~~~~~~~v~l~~~lg 272 (385)
T 4hwg_A 202 --PKQYFLISSHREENVDVKNNLKELLNSLQMLIKEYNFLIIFSTH---P----RTKKRLEDLEGFKELGDKIRFLPAFS 272 (385)
T ss_dssp --TTSEEEEEECCC-----CHHHHHHHHHHHHHHHHHCCEEEEEEC---H----HHHHHHHTSGGGGGTGGGEEECCCCC
T ss_pred --cCCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcCCeEEEEECC---h----HHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 4445566677643 447899999999998653 677776554 2 244444444 3 246899999999
Q ss_pred HHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCC-CCccccccccCCCCCCCccceEEEeCCCHHHHHHHHH
Q 043397 474 EELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKT-GGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALD 552 (596)
Q Consensus 474 ~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~-gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~ 552 (596)
..++..+|+.||+++.+| |.++.||+++|+|+|+... .+.+|.++. ++++++.. |++++.+++.
T Consensus 273 ~~~~~~l~~~adlvvt~S-----Ggv~~EA~alG~Pvv~~~~~ter~e~v~~---------G~~~lv~~-d~~~i~~ai~ 337 (385)
T 4hwg_A 273 FTDYVKLQMNAFCILSDS-----GTITEEASILNLPALNIREAHERPEGMDA---------GTLIMSGF-KAERVLQAVK 337 (385)
T ss_dssp HHHHHHHHHHCSEEEECC-----TTHHHHHHHTTCCEEECSSSCSCTHHHHH---------TCCEECCS-SHHHHHHHHH
T ss_pred HHHHHHHHHhCcEEEECC-----ccHHHHHHHcCCCEEEcCCCccchhhhhc---------CceEEcCC-CHHHHHHHHH
Confidence 888999999999999776 5578999999999999644 346777765 57777764 8999999999
Q ss_pred HHHHhccCCHHHHHHHHH--HHH-HhcCCHHHHHHHHHHHH
Q 043397 553 RAFRHFIDKPEEWNRIVQ--KIM-ENDNSWNNAAGKYMEIY 590 (596)
Q Consensus 553 ~ll~~~~~~~~~~~~~~~--~~~-~~~fs~~~~~~~~~~iy 590 (596)
++++ |+..+++|++ +.+ ....+-+++++.+.+.+
T Consensus 338 ~ll~----d~~~~~~m~~~~~~~~g~g~aa~rI~~~l~~~~ 374 (385)
T 4hwg_A 338 TITE----EHDNNKRTQGLVPDYNEAGLVSKKILRIVLSYV 374 (385)
T ss_dssp HHHT----TCBTTBCCSCCCHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHh----ChHHHHHhhccCCCCCCCChHHHHHHHHHHHHh
Confidence 9998 6666555542 222 33445555555555443
No 45
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.44 E-value=4.1e-12 Score=135.54 Aligned_cols=155 Identities=11% Similarity=0.025 Sum_probs=113.9
Q ss_pred ccEEEEEecccc-----cCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHH
Q 043397 406 VPLVVCITRLVA-----QKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHML 480 (596)
Q Consensus 406 ~~~il~iGrl~~-----~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~ 480 (596)
..++++.|++.. .|.+..+++++..+ +++++++++ +...+.++ ++.++|++.+++++. .+
T Consensus 268 ~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~---~~~~v~~~g---~~~~~~l~------~~~~~v~~~~~~~~~---~l 332 (441)
T 2yjn_A 268 RRVCLTLGISSRENSIGQVSIEELLGAVGDV---DAEIIATFD---AQQLEGVA------NIPDNVRTVGFVPMH---AL 332 (441)
T ss_dssp CEEEEEC----------CCSTTTTHHHHHTS---SSEEEECCC---TTTTSSCS------SCCSSEEECCSCCHH---HH
T ss_pred CEEEEECCCCcccccChHHHHHHHHHHHHcC---CCEEEEEEC---Ccchhhhc------cCCCCEEEecCCCHH---HH
Confidence 457788999875 48888888888654 788888776 33222121 235689999999974 46
Q ss_pred HHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEeCC--CHHHHHHHHHHH
Q 043397 481 YAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFEGI--DEGSLNWALDRA 554 (596)
Q Consensus 481 ~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~~~--d~~~la~~i~~l 554 (596)
|+.||++|.. +.+.+++|||++|+|+|+....+ ..+.+.+ .+.|+.++.. ++++|+++|.++
T Consensus 333 l~~ad~~V~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~--------~g~g~~~~~~~~~~~~l~~~i~~l 400 (441)
T 2yjn_A 333 LPTCAATVHH----GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQE--------FGAGIALPVPELTPDQLRESVKRV 400 (441)
T ss_dssp GGGCSEEEEC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHH--------HTSEEECCTTTCCHHHHHHHHHHH
T ss_pred HhhCCEEEEC----CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHH--------cCCEEEcccccCCHHHHHHHHHHH
Confidence 8999999973 55679999999999999987754 4555655 5789988765 789999999999
Q ss_pred HHhccCCHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHH
Q 043397 555 FRHFIDKPEEWNRIVQKIM--ENDNSWNNAAGKYMEIYN 591 (596)
Q Consensus 555 l~~~~~~~~~~~~~~~~~~--~~~fs~~~~~~~~~~iy~ 591 (596)
++ |++.++++++.+. ......+++++.+.++..
T Consensus 401 l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 401 LD----DPAHRAGAARMRDDMLAEPSPAEVVGICEELAA 435 (441)
T ss_dssp HH----CHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred hc----CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 98 8888888775433 367888898888877764
No 46
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.41 E-value=5.3e-10 Score=118.37 Aligned_cols=158 Identities=11% Similarity=0.050 Sum_probs=109.2
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHHcCCEEE-EEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh
Q 043397 405 TVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMI-LLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA 483 (596)
Q Consensus 405 ~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lv-IvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~ 483 (596)
...++++.|+.. .+..+.+.++++.+.+.+++++ ++|. +...+.+. .+.++|.+.+++++. .+|+.
T Consensus 255 ~~~v~v~~Gs~~-~~~~~~~~~~~~al~~~~~~~~~~~g~---~~~~~~~~------~~~~~v~~~~~~~~~---~~l~~ 321 (424)
T 2iya_A 255 RPVLLIALGSAF-TDHLDFYRTCLSAVDGLDWHVVLSVGR---FVDPADLG------EVPPNVEVHQWVPQL---DILTK 321 (424)
T ss_dssp CCEEEEECCSSS-CCCHHHHHHHHHHHTTCSSEEEEECCT---TSCGGGGC------SCCTTEEEESSCCHH---HHHTT
T ss_pred CCEEEEEcCCCC-cchHHHHHHHHHHHhcCCcEEEEEECC---cCChHHhc------cCCCCeEEecCCCHH---HHHhh
Confidence 456778889987 4444555555555544577874 4676 43222221 234689999999984 68999
Q ss_pred CCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEeCC--CHHHHHHHHHHHHHh
Q 043397 484 ADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFEGI--DEGSLNWALDRAFRH 557 (596)
Q Consensus 484 aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~~~--d~~~la~~i~~ll~~ 557 (596)
||++|.- +...+++||+++|+|+|+....+ ..+.+.+ .+.|+.++.. ++++++++|.++++
T Consensus 322 ~d~~v~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~--------~g~g~~~~~~~~~~~~l~~~i~~ll~- 388 (424)
T 2iya_A 322 ASAFITH----AGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVE--------LGLGRHIPRDQVTAEKLREAVLAVAS- 388 (424)
T ss_dssp CSEEEEC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHH--------TTSEEECCGGGCCHHHHHHHHHHHHH-
T ss_pred CCEEEEC----CchhHHHHHHHcCCCEEEecCccchHHHHHHHHH--------CCCEEEcCcCCCCHHHHHHHHHHHHc-
Confidence 9999864 33479999999999999987653 2344544 4678888654 78999999999998
Q ss_pred ccCCHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHH
Q 043397 558 FIDKPEEWNRIVQKI--MENDNSWNNAAGKYMEIYN 591 (596)
Q Consensus 558 ~~~~~~~~~~~~~~~--~~~~fs~~~~~~~~~~iy~ 591 (596)
|++.++++.+.+ +......+++++.+.++..
T Consensus 389 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 421 (424)
T 2iya_A 389 ---DPGVAERLAAVRQEIREAGGARAAADILEGILA 421 (424)
T ss_dssp ---CHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 887777666433 2345666777777666554
No 47
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.29 E-value=4e-10 Score=118.63 Aligned_cols=155 Identities=19% Similarity=0.151 Sum_probs=104.6
Q ss_pred CCccEEEEEeccc-ccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH
Q 043397 404 GTVPLVVCITRLV-AQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA 482 (596)
Q Consensus 404 ~~~~~il~iGrl~-~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a 482 (596)
...+++++.|++. +.+.++.+++++..+ ++++++.++ ....+ ..+..++|.+.++++.+ .++.
T Consensus 220 ~~~~Vlv~~Gs~~~~~~~~~~~~~al~~~---~~~vv~~~g---~~~~~-------~~~~~~~v~~~~~~~~~---~ll~ 283 (404)
T 3h4t_A 220 GSPPVYVGFGSGPAPAEAARVAIEAVRAQ---GRRVVLSSG---WAGLG-------RIDEGDDCLVVGEVNHQ---VLFG 283 (404)
T ss_dssp SSCCEEECCTTSCCCTTHHHHHHHHHHHT---TCCEEEECT---TTTCC-------CSSCCTTEEEESSCCHH---HHGG
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHHHhC---CCEEEEEeC---Ccccc-------cccCCCCEEEecCCCHH---HHHh
Confidence 3456788889987 666677777777654 678877754 21111 12335789999999874 4678
Q ss_pred hCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCc----cccccccCCCCCCCccceEEEeCC--CHHHHHHHHHHHHH
Q 043397 483 AADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGL----ADTVFDVDDPSNHEKANGFVFEGI--DEGSLNWALDRAFR 556 (596)
Q Consensus 483 ~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~----~e~i~~~~~~~~~~~~~G~lv~~~--d~~~la~~i~~ll~ 556 (596)
.||++|.. +-..++.||+++|+|+|+....+- .+.+.+ .+.|..+... ++++|.++|.+++
T Consensus 284 ~~d~~v~~----gG~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~--------~G~g~~l~~~~~~~~~l~~ai~~ll- 350 (404)
T 3h4t_A 284 RVAAVVHH----GGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVAD--------LGVGVAHDGPTPTVESLSAALATAL- 350 (404)
T ss_dssp GSSEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHH--------HTSEEECSSSSCCHHHHHHHHHHHT-
T ss_pred hCcEEEEC----CcHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHH--------CCCEeccCcCCCCHHHHHHHHHHHh-
Confidence 99999965 344789999999999999766542 233444 4678887643 6899999999998
Q ss_pred hccCCHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 043397 557 HFIDKPEEWNRIVQKIME-NDNSWNNAAGKYMEIYN 591 (596)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~-~~fs~~~~~~~~~~iy~ 591 (596)
+++.++++.+.+.+ .+...+++++.+.++++
T Consensus 351 ----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 382 (404)
T 3h4t_A 351 ----TPGIRARAAAVAGTIRTDGTTVAAKLLLEAIS 382 (404)
T ss_dssp ----SHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34555555443332 22456666666666554
No 48
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.28 E-value=2.5e-10 Score=123.31 Aligned_cols=184 Identities=11% Similarity=0.002 Sum_probs=127.5
Q ss_pred hcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHH--cCCEEE--EEecCCCCcchHHHHHHHHHcCCCCcEEEEecc
Q 043397 397 GLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--LGGQMI--LLGNSPVHWVQKDFEDLANLHNKGTSTRILLMY 472 (596)
Q Consensus 397 ~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~~~~lv--IvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~ 472 (596)
.++++.+.+.+++++.++ ..|..+.+++++.++.+ |+..+. ++|. ..|.....+ +.+.+.|+.++|+|.|..
T Consensus 432 ~~~lp~~~G~v~Fg~fn~--~~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~-~~g~~~~~~-~~~~~~GI~~Rv~F~g~~ 507 (631)
T 3q3e_A 432 DYLLRENPEVVNIGIAST--TMKLNPYFLEALKAIRDRAKVKVHFHFALGQ-SNGITHPYV-ERFIKSYLGDSATAHPHS 507 (631)
T ss_dssp CCCCCSCCSEEEEEEEEC--STTCCHHHHHHHHHHHHHCSSEEEEEEEESS-CCGGGHHHH-HHHHHHHHGGGEEEECCC
T ss_pred cccCCcCCCeEEEEECCc--cccCCHHHHHHHHHHHHhCCCcEEEEEecCC-CchhhHHHH-HHHHHcCCCccEEEcCCC
Confidence 455542123577778777 47999999999999876 554443 3674 224444444 445567888899999999
Q ss_pred CHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHH
Q 043397 473 SEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALD 552 (596)
Q Consensus 473 ~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~ 552 (596)
+.++....|+.||++|.|+.+.+ |++.+|||++|+|||+...+++...+...- ...-|-.++++.. |.+++.+...
T Consensus 508 p~~e~la~y~~aDIfLDpfpy~G-gtTtlEALwmGVPVVTl~G~~~asRvgaSl--L~~~GLpE~LIA~-d~eeYv~~Av 583 (631)
T 3q3e_A 508 PYHQYLRILHNCDMMVNPFPFGN-TNGIIDMVTLGLVGVCKTGAEVHEHIDEGL--FKRLGLPEWLIAN-TVDEYVERAV 583 (631)
T ss_dssp CHHHHHHHHHTCSEEECCSSSCC-SHHHHHHHHTTCCEEEECCSSHHHHHHHHH--HHHTTCCGGGEES-SHHHHHHHHH
T ss_pred CHHHHHHHHhcCcEEEeCCcccC-ChHHHHHHHcCCCEEeccCCcHHHHhHHHH--HHhcCCCcceecC-CHHHHHHHHH
Confidence 99999999999999999997755 999999999999999977665555442000 0000234432322 7999999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHh-----cCC--HHHHHHHHHHHHHH
Q 043397 553 RAFRHFIDKPEEWNRIVQKIMEN-----DNS--WNNAAGKYMEIYNS 592 (596)
Q Consensus 553 ~ll~~~~~~~~~~~~~~~~~~~~-----~fs--~~~~~~~~~~iy~~ 592 (596)
++.+ |++++.+++++..+. -|+ .+.+.+.|.++|++
T Consensus 584 ~La~----D~~~l~~LR~~Lr~~~~~spLFd~~~~~~e~~ye~~~~~ 626 (631)
T 3q3e_A 584 RLAE----NHQERLELRRYIIENNGLNTLFTGDPRPMGQVFLEKLNA 626 (631)
T ss_dssp HHHH----CHHHHHHHHHHHHHSCCHHHHTCSCCTHHHHHHHHHHHH
T ss_pred HHhC----CHHHHHHHHHHHHHHhhhCCCcchhHHHHHHHHHHHHHH
Confidence 9999 999999998776652 233 24445555555544
No 49
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.24 E-value=2.5e-10 Score=119.68 Aligned_cols=155 Identities=12% Similarity=0.074 Sum_probs=100.0
Q ss_pred CccEEEEEecccccCC-HHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh
Q 043397 405 TVPLVVCITRLVAQKG-LHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA 483 (596)
Q Consensus 405 ~~~~il~iGrl~~~KG-i~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~ 483 (596)
..+++++.|++...++ .+.+.++++.+.+.+.++++.+. +...+. ...+.+++.+.++++.. .+|+.
T Consensus 237 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~---~~~~~~------~~~~~~~v~~~~~~p~~---~lL~~ 304 (400)
T 4amg_A 237 RRRIAVTLGSIDALSGGIAKLAPLFSEVADVDAEFVLTLG---GGDLAL------LGELPANVRVVEWIPLG---ALLET 304 (400)
T ss_dssp CCEEEECCCSCC--CCSSSTTHHHHHHGGGSSSEEEEECC---TTCCCC------CCCCCTTEEEECCCCHH---HHHTT
T ss_pred CcEEEEeCCcccccCccHHHHHHHHHHhhccCceEEEEec---Cccccc------cccCCCCEEEEeecCHH---HHhhh
Confidence 4456677888765544 45555566666556788877765 221111 12335689999999874 57899
Q ss_pred CCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhcc
Q 043397 484 ADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFI 559 (596)
Q Consensus 484 aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~ 559 (596)
||++|. .+...+++|||++|+|+|+....+ ..+.+++ .+.|+.++ +.+.++++|+++++
T Consensus 305 ~~~~v~----h~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~--------~G~g~~l~--~~~~~~~al~~lL~--- 367 (400)
T 4amg_A 305 CDAIIH----HGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTG--------LGIGFDAE--AGSLGAEQCRRLLD--- 367 (400)
T ss_dssp CSEEEE----CCCHHHHHHHHHHTCCEEECCC---CHHHHHHHHH--------HTSEEECC--TTTCSHHHHHHHHH---
T ss_pred hhheec----cCCccHHHHHHHhCCCEEEecCcccHHHHHHHHHH--------CCCEEEcC--CCCchHHHHHHHHc---
Confidence 999884 355678999999999999965544 3344444 46777765 44557889999998
Q ss_pred CCHHHHHHHHH--HHHHhcCCHHHHHHHHHHH
Q 043397 560 DKPEEWNRIVQ--KIMENDNSWNNAAGKYMEI 589 (596)
Q Consensus 560 ~~~~~~~~~~~--~~~~~~fs~~~~~~~~~~i 589 (596)
|+..+++..+ +.++..-+..++++.+.++
T Consensus 368 -d~~~r~~a~~l~~~~~~~~~~~~~a~~le~l 398 (400)
T 4amg_A 368 -DAGLREAALRVRQEMSEMPPPAETAAXLVAL 398 (400)
T ss_dssp -CHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 8877665543 2233444666666665543
No 50
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.23 E-value=1.3e-09 Score=114.97 Aligned_cols=154 Identities=18% Similarity=0.184 Sum_probs=105.9
Q ss_pred CccEEEEEecc-cccCCHHHHHHHHHHHHHcCCEEEEE-ecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH
Q 043397 405 TVPLVVCITRL-VAQKGLHLITHAIKRAEELGGQMILL-GNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA 482 (596)
Q Consensus 405 ~~~~il~iGrl-~~~KGi~~ll~A~~~l~~~~~~lvIv-G~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a 482 (596)
+..++++.|++ .+.+.++.++++++.+ +.+++++ |. +... . ....++|.+.+++++.+ +++
T Consensus 238 ~~~v~v~~Gs~~~~~~~~~~~~~al~~~---~~~~v~~~g~---~~~~--~------~~~~~~v~~~~~~~~~~---~l~ 300 (415)
T 1iir_A 238 PPPVYLGFGSLGAPADAVRVAIDAIRAH---GRRVILSRGW---ADLV--L------PDDGADCFAIGEVNHQV---LFG 300 (415)
T ss_dssp SCCEEEECC---CCHHHHHHHHHHHHHT---TCCEEECTTC---TTCC--C------SSCGGGEEECSSCCHHH---HGG
T ss_pred CCeEEEeCCCCCCcHHHHHHHHHHHHHC---CCeEEEEeCC---Cccc--c------cCCCCCEEEeCcCChHH---HHh
Confidence 35678899999 5888888888888765 5677665 65 3221 0 12345899999999854 579
Q ss_pred hCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEeCC--CHHHHHHHHHHHHH
Q 043397 483 AADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFEGI--DEGSLNWALDRAFR 556 (596)
Q Consensus 483 ~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~~~--d~~~la~~i~~ll~ 556 (596)
+||++|.. +...+++|||++|+|+|+....+ ..+.+++ .+.|+.++.. +.++++++|.++ +
T Consensus 301 ~~d~~v~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~--------~g~g~~~~~~~~~~~~l~~~i~~l-~ 367 (415)
T 1iir_A 301 RVAAVIHH----GGAGTTHVAARAGAPQILLPQMADQPYYAGRVAE--------LGVGVAHDGPIPTFDSLSAALATA-L 367 (415)
T ss_dssp GSSEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHH--------HTSEEECSSSSCCHHHHHHHHHHH-T
T ss_pred hCCEEEeC----CChhHHHHHHHcCCCEEECCCCCccHHHHHHHHH--------CCCcccCCcCCCCHHHHHHHHHHH-c
Confidence 99999974 34479999999999999987655 3344555 5788888643 789999999999 7
Q ss_pred hccCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 043397 557 HFIDKPEEWNRIVQKIMENDNSWNNAAGKYMEIYNSIR 594 (596)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~iy~~l~ 594 (596)
|++.++++.+.+.+ +....-+++..+.+++++
T Consensus 368 ----~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~ 399 (415)
T 1iir_A 368 ----TPETHARATAVAGT--IRTDGAAVAARLLLDAVS 399 (415)
T ss_dssp ----SHHHHHHHHHHHHH--SCSCHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHH--HhhcChHHHHHHHHHHHH
Confidence 88877776654443 333444445555544443
No 51
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.13 E-value=5e-09 Score=110.59 Aligned_cols=134 Identities=17% Similarity=0.159 Sum_probs=95.5
Q ss_pred CccEEEEEeccc---ccCCHHHHHHHHHHHHHcCCEEEEE-ecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHH
Q 043397 405 TVPLVVCITRLV---AQKGLHLITHAIKRAEELGGQMILL-GNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHML 480 (596)
Q Consensus 405 ~~~~il~iGrl~---~~KGi~~ll~A~~~l~~~~~~lvIv-G~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~ 480 (596)
+..++++.|++. ..+.++.++++++.+ +.+++++ |. +... . ....+++.+.++++.. ++
T Consensus 237 ~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~---~~~~v~~~g~---~~~~--~------~~~~~~v~~~~~~~~~---~l 299 (416)
T 1rrv_A 237 SPPVHIGFGSSSGRGIADAAKVAVEAIRAQ---GRRVILSRGW---TELV--L------PDDRDDCFAIDEVNFQ---AL 299 (416)
T ss_dssp SCCEEECCTTCCSHHHHHHHHHHHHHHHHT---TCCEEEECTT---TTCC--C------SCCCTTEEEESSCCHH---HH
T ss_pred CCeEEEecCCCCccChHHHHHHHHHHHHHC---CCeEEEEeCC---cccc--c------cCCCCCEEEeccCChH---HH
Confidence 356778889985 456677777777654 6777765 65 3221 1 1234689999999864 46
Q ss_pred HHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEeC--CCHHHHHHHHHHH
Q 043397 481 YAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFEG--IDEGSLNWALDRA 554 (596)
Q Consensus 481 ~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~~--~d~~~la~~i~~l 554 (596)
|++||++|. .+...+++||+++|+|+|+....+ ..+.+++ .+.|+.++. .+.++++++|.++
T Consensus 300 l~~~d~~v~----~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~--------~g~g~~~~~~~~~~~~l~~~i~~l 367 (416)
T 1rrv_A 300 FRRVAAVIH----HGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAA--------LGIGVAHDGPTPTFESLSAALTTV 367 (416)
T ss_dssp GGGSSEEEE----CCCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHH--------HTSEEECSSSCCCHHHHHHHHHHH
T ss_pred hccCCEEEe----cCChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHH--------CCCccCCCCCCCCHHHHHHHHHHh
Confidence 799999997 344569999999999999976644 3334544 578888764 4789999999999
Q ss_pred HHhccCCHHHHHHHHHHH
Q 043397 555 FRHFIDKPEEWNRIVQKI 572 (596)
Q Consensus 555 l~~~~~~~~~~~~~~~~~ 572 (596)
+ |++.++++++.+
T Consensus 368 -~----~~~~~~~~~~~~ 380 (416)
T 1rrv_A 368 -L----APETRARAEAVA 380 (416)
T ss_dssp -T----SHHHHHHHHHHT
T ss_pred -h----CHHHHHHHHHHH
Confidence 7 887777766543
No 52
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.10 E-value=2.8e-10 Score=104.49 Aligned_cols=133 Identities=11% Similarity=0.015 Sum_probs=100.1
Q ss_pred CccEEEEEeccc---ccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHH
Q 043397 405 TVPLVVCITRLV---AQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLY 481 (596)
Q Consensus 405 ~~~~il~iGrl~---~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~ 481 (596)
...++++.|++. +.|+++.+++++.++ +.+++++++ +...+ .+.++|++.++++++++..+
T Consensus 21 ~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~---~~~~~~~~g---~~~~~---------~~~~~v~~~~~~~~~~~l~~- 84 (170)
T 2o6l_A 21 NGVVVFSLGSMVSNMTEERANVIASALAQI---PQKVLWRFD---GNKPD---------TLGLNTRLYKWIPQNDLLGH- 84 (170)
T ss_dssp TCEEEEECCSCCTTCCHHHHHHHHHHHTTS---SSEEEEECC---SSCCT---------TCCTTEEEESSCCHHHHHTS-
T ss_pred CCEEEEECCCCcccCCHHHHHHHHHHHHhC---CCeEEEEEC---CcCcc---------cCCCcEEEecCCCHHHHhcC-
Confidence 456788999985 677888888887554 578888776 33221 23468999999998654332
Q ss_pred HhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEeCC--CHHHHHHHHHHHH
Q 043397 482 AAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFEGI--DEGSLNWALDRAF 555 (596)
Q Consensus 482 a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~~~--d~~~la~~i~~ll 555 (596)
++||++|.. +.+.+++|||++|+|+|+....+ ..+.+.+ .+.|+++++. ++++|+++|.+++
T Consensus 85 ~~ad~~I~~----~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~--------~g~g~~~~~~~~~~~~l~~~i~~ll 152 (170)
T 2o6l_A 85 PKTRAFITH----GGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKA--------RGAAVRVDFNTMSSTDLLNALKRVI 152 (170)
T ss_dssp TTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHT--------TTSEEECCTTTCCHHHHHHHHHHHH
T ss_pred CCcCEEEEc----CCccHHHHHHHcCCCEEeccchhhHHHHHHHHHH--------cCCeEEeccccCCHHHHHHHHHHHH
Confidence 999999974 45699999999999999987753 3455555 5789998866 7899999999999
Q ss_pred HhccCCHHHHHHHH
Q 043397 556 RHFIDKPEEWNRIV 569 (596)
Q Consensus 556 ~~~~~~~~~~~~~~ 569 (596)
+ |++.++++.
T Consensus 153 ~----~~~~~~~a~ 162 (170)
T 2o6l_A 153 N----DPSYKENVM 162 (170)
T ss_dssp H----CHHHHHHHH
T ss_pred c----CHHHHHHHH
Confidence 8 876544433
No 53
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=99.02 E-value=2.9e-09 Score=116.84 Aligned_cols=222 Identities=18% Similarity=0.132 Sum_probs=153.7
Q ss_pred ccchhhchhccccCeEEEeChhhHHHHhhcchhhhhhhccCC-cEEEeeCCCCCCCcCCCCcCC--------Cc---c--
Q 043397 312 ERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRD-KYFGILNGIDTVIWNPATDAF--------LP---A-- 377 (596)
Q Consensus 312 ~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~-ki~vI~nGid~~~~~p~~~~~--------~~---~-- 377 (596)
+.++|...|+..|..|-.||.-+.+.++..- +..++..-+. |+.-+.|||....|.....+. ++ .
T Consensus 466 ~~v~MA~LAi~~S~~vNGVs~LH~ev~k~~~-f~df~~l~P~~kf~n~TNGVt~rrWl~~~Np~L~~Li~~~iG~~~~~W 544 (879)
T 1ygp_A 466 RQIRMAFLAIVGSHKVNGVVELHSELIKTTI-FKDFIKFYGPSKFVNVTNGITPRRWLKQANPSLAKLISETLNDPTEEY 544 (879)
T ss_dssp CEEEHHHHHHHHEEEEEESSHHHHHHHHHTT-THHHHHHHCGGGEEECCCCBCHHHHTTTTCHHHHHHHHHHTTCTTCGG
T ss_pred ceeehHHHHHHhcCceeEehHHHHHHHHHHH-hHHHHHhCCCCcccCcCCCcCCchhhhhcCHHHHHHHHHhcCCChhhh
Confidence 4688889999999999999987776654321 3333444456 999999999876664211111 11 0
Q ss_pred -----------ccCCC------Cchhhh----hhHHHHHhhc-CCCCC-----CCccEEEEEecccccCCHHH-HHHHHH
Q 043397 378 -----------KFHAQ------KPEGKK----ICKYYIQKGL-GLKSE-----GTVPLVVCITRLVAQKGLHL-ITHAIK 429 (596)
Q Consensus 378 -----------~~~~~------~~~~k~----~~k~~~~~~l-~l~~~-----~~~~~il~iGrl~~~KGi~~-ll~A~~ 429 (596)
+|... ..+.|. .-...++++. |...+ ++...++++-|+..+|+..+ ++..+.
T Consensus 545 ~~d~~~L~~l~~~~~D~~f~~~l~~iK~~nK~~La~~i~~~~~g~~ld~~~~~p~sLfdvq~KR~heYKRq~LniL~ii~ 624 (879)
T 1ygp_A 545 LLDMAKLTQLEKYVEDKEFLKKWNQVKLNNKIRLVDLIKKENDGVDIINREYLDDTLFDMQVKRIHEYKRQQLNVFGIIY 624 (879)
T ss_dssp GTCGGGGGGGGGGGGCTHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSCSTTGGGCEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred hhCHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEecCCCCCCCeeeeeeeehhhHhHHHHHHHHHHHH
Confidence 00000 012233 3334456677 87777 77889999999999999999 677665
Q ss_pred HHHH------------------cCCEEEEEecCCCCcch-HHHHHHHHHc--------CCCC--cEEEEeccCHHHHHHH
Q 043397 430 RAEE------------------LGGQMILLGNSPVHWVQ-KDFEDLANLH--------NKGT--STRILLMYSEELSHML 480 (596)
Q Consensus 430 ~l~~------------------~~~~lvIvG~~~~g~~~-~~l~~~~~~~--------~~~~--~V~~~g~~~~~~l~~~ 480 (596)
++.+ .+.++++.|++-.+... ..+.+++... .+.+ +|.|+..++-.....+
T Consensus 625 ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v~~~LKVVFlenY~VslAe~i 704 (879)
T 1ygp_A 625 RYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKLINCVADIVNNDESIEHLLKVVFVADYNVSKAEII 704 (879)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCGGGTTSEEEEEETTCCHHHHHHH
T ss_pred HHHHHHhCccccCCCcccccCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhhCCceEEEEeCCCCHHHHHHh
Confidence 5421 25688888885333322 2333333322 1334 6999999999999999
Q ss_pred HHhCCEEEEcCC--CCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEe
Q 043397 481 YAAADIVLVPSI--YEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFE 540 (596)
Q Consensus 481 ~a~aDi~l~PS~--~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~ 540 (596)
+.+||+...-|. .|.+|..-|-+|..|.+.|++--|...|+.+++. ..|+|+|-
T Consensus 705 ipaaDvseqistag~EASGTsnMKfalNGaLtlgtlDGanvEi~e~vG------~eN~fiFG 760 (879)
T 1ygp_A 705 IPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREIG------EDNVFLFG 760 (879)
T ss_dssp GGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEESCTHHHHHHHHHC------GGGSEEES
T ss_pred hhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecccchhHHHHHHcC------cccEEEcc
Confidence 999999998886 5999999999999999999999899888876532 35777774
No 54
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.43 E-value=1.1e-05 Score=90.68 Aligned_cols=180 Identities=11% Similarity=-0.035 Sum_probs=133.4
Q ss_pred HHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHH--cCCEEEEEecCCCCcchHHHHHHHHHcCCCC-cEEEEe
Q 043397 394 IQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEE--LGGQMILLGNSPVHWVQKDFEDLANLHNKGT-STRILL 470 (596)
Q Consensus 394 ~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~--~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~-~V~~~g 470 (596)
.|+.+|++ .+.+++++..++ .|=-+.+++++.++.+ |+.+|++.... ....+.+++.+++.|+.. +|+|.+
T Consensus 513 ~R~~~gLp--~~~v~f~~fN~~--~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~--~~~~~~l~~~~~~~gi~~~r~~f~~ 586 (723)
T 4gyw_A 513 TRSQYGLP--EDAIVYCNFNQL--YKIDPSTLQMWANILKRVPNSVLWLLRFP--AVGEPNIQQYAQNMGLPQNRIIFSP 586 (723)
T ss_dssp EGGGGTCC--TTSEEEECCSCG--GGCCHHHHHHHHHHHHHCSSEEEEEEETT--GGGHHHHHHHHHHTTCCGGGEEEEE
T ss_pred chhhcCCC--CCCEEEEeCCcc--ccCCHHHHHHHHHHHHhCCCCeEEEEeCc--HHHHHHHHHHHHhcCCCcCeEEECC
Confidence 46678887 667777777665 6667888888888766 78899888762 345677888888888864 699999
Q ss_pred ccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccccc-----cccCCCCCCCccceEEEeCCCHH
Q 043397 471 MYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTV-----FDVDDPSNHEKANGFVFEGIDEG 545 (596)
Q Consensus 471 ~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i-----~~~~~~~~~~~~~G~lv~~~d~~ 545 (596)
..+.++....|+.+||+|-|-.+ +-+.+.+||+.+|+|||+-.-..+..-+ ... |-..++. .|.+
T Consensus 587 ~~~~~~~l~~~~~~Di~LDt~p~-~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~-------gl~e~ia--~~~~ 656 (723)
T 4gyw_A 587 VAPKEEHVRRGQLADVCLDTPLC-NGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCL-------GCLELIA--KNRQ 656 (723)
T ss_dssp CCCHHHHHHHGGGCSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHH-------TCGGGBC--SSHH
T ss_pred CCCHHHHHHHhCCCeEEeCCCCc-CCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHc-------CCccccc--CCHH
Confidence 99999999999999999988666 5689999999999999984422222211 110 1112222 2788
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHH
Q 043397 546 SLNWALDRAFRHFIDKPEEWNRIVQKIME-----NDNSWNNAAGKYMEIYNSI 593 (596)
Q Consensus 546 ~la~~i~~ll~~~~~~~~~~~~~~~~~~~-----~~fs~~~~~~~~~~iy~~l 593 (596)
+..+.-.++.+ |++.+.+++++..+ .-|+-...++.+.+.|+++
T Consensus 657 ~Y~~~a~~la~----d~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~~ 705 (723)
T 4gyw_A 657 EYEDIAVKLGT----DLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQM 705 (723)
T ss_dssp HHHHHHHHHHH----CHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc----CHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHHHH
Confidence 88888888887 99888888754433 3589999999999988876
No 55
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=98.11 E-value=0.0051 Score=55.89 Aligned_cols=156 Identities=17% Similarity=0.115 Sum_probs=104.3
Q ss_pred EEEEecccccCCHHHHHHHHHHHHHcCC-EEEEEecCCCCcchHHHHHH--------------HHHcCCCCc--EEEEec
Q 043397 409 VVCITRLVAQKGLHLITHAIKRAEELGG-QMILLGNSPVHWVQKDFEDL--------------ANLHNKGTS--TRILLM 471 (596)
Q Consensus 409 il~iGrl~~~KGi~~ll~A~~~l~~~~~-~lvIvG~~~~g~~~~~l~~~--------------~~~~~~~~~--V~~~g~ 471 (596)
=-++||-..+||+-.+.+--+++.+|.. .-++-|- .. ...+... ++.+++.++ -.++.-
T Consensus 200 nrwigrtttwkgfyqmfdfhekflkpagkstvmegl---er-spafiaikekgipyeyygnreidkmnlapnqpaqildc 275 (401)
T 1xv5_A 200 NRWIGRTTTWKGFYQMFDFHEKFLKPAGKSTVMEGL---ER-SPAFIAIKEKGIPYEYYGNREIDKMNLAPNQPAQILDC 275 (401)
T ss_dssp EEEECCSCGGGCHHHHHHHHHHTTTTTTCEEEEECC---CC-SHHHHHHHHTTCCEEEECGGGGGGCCCSSSCCEEEESC
T ss_pred hhhhcccchhHhHHHHhhHHHHhcCccchhhhhhhh---hc-CCceEEEcccCCchhhcCcchhhhhcCCCCCcchhhhh
Confidence 3689999999999999998888877644 4444453 11 1222221 223444444 566676
Q ss_pred cCHHHHHHHHHhCCEEEEcCCC------CCCchHHHHHHhcCCceEEeCCCC--ccccccccCCCCCCCccceEEEeCCC
Q 043397 472 YSEELSHMLYAAADIVLVPSIY------EPCGLAQMIGMRYGAVPVVRKTGG--LADTVFDVDDPSNHEKANGFVFEGID 543 (596)
Q Consensus 472 ~~~~~l~~~~a~aDi~l~PS~~------E~~gl~~lEAma~G~pvI~s~~gg--~~e~i~~~~~~~~~~~~~G~lv~~~d 543 (596)
+-..++.+-++.+...-..|.. -..-.+-+|--|||+.+|--...| +.--+.+ +..++-...-++++..|
T Consensus 276 yinsemlermsksgfgyqlsklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdn--tpltshdsgiiwfdend 353 (401)
T 1xv5_A 276 YINSEMLERMSKSGFGYQLSKLNQKYLQRSLEYTHLELGACGTIPVFWKSTGENLKFRVDN--TPLTSHDSGIIWFDEND 353 (401)
T ss_dssp CCHHHHHHHHHTEEEEEECCCCCGGGCSSCCCHHHHHHHHHTSEEEEEHHHHHHSBCTTTC--CBGGGSCCSCEEECTTC
T ss_pred eecHHHHHHhhhcCcccchHHHHHHHHHhhhhhheeecccccceeeeecccCcceEEEecC--CcccccCCceEEecCCc
Confidence 7778888999999988877752 466778999999999888754333 2211211 11111123346778889
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043397 544 EGSLNWALDRAFRHFIDKPEEWNRIVQKIME 574 (596)
Q Consensus 544 ~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~ 574 (596)
.++--+.|.++.+ |++++.+-..++.+
T Consensus 354 mestferikelss----dralydrerekaye 380 (401)
T 1xv5_A 354 MESTFERIKELSS----DRALYDREREKAYE 380 (401)
T ss_dssp HHHHHHHHHHHHT----CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcc----chhhhhHHHHHHHH
Confidence 9999999999988 88888877776665
No 56
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=97.92 E-value=0.015 Score=61.29 Aligned_cols=134 Identities=12% Similarity=0.035 Sum_probs=83.1
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHH-HHHHHHcCCCCcEEEEeccCHHHHHHHHHh
Q 043397 405 TVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDF-EDLANLHNKGTSTRILLMYSEELSHMLYAA 483 (596)
Q Consensus 405 ~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l-~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~ 483 (596)
+..++++.|.+... ..+.+.+.+..+.+.+.+++++-. +...+.+ +...++. .+|+.+.+++++ ..+++.
T Consensus 273 ~~vVyvsfGS~~~~-~~~~~~el~~~l~~~~~~flw~~~---~~~~~~lp~~~~~~~--~~~~~vv~w~Pq---~~vL~h 343 (454)
T 3hbf_A 273 SSVVYISFGSVVTP-PPHELTALAESLEECGFPFIWSFR---GDPKEKLPKGFLERT--KTKGKIVAWAPQ---VEILKH 343 (454)
T ss_dssp TCEEEEECCSSCCC-CHHHHHHHHHHHHHHCCCEEEECC---SCHHHHSCTTHHHHT--TTTEEEESSCCH---HHHHHS
T ss_pred CceEEEecCCCCcC-CHHHHHHHHHHHHhCCCeEEEEeC---CcchhcCCHhHHhhc--CCceEEEeeCCH---HHHHhh
Confidence 44566788887543 344555555555555777776543 2211111 1111221 357888899998 368899
Q ss_pred CCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEeC--CCHHHHHHHHHHHHH
Q 043397 484 ADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFEG--IDEGSLNWALDRAFR 556 (596)
Q Consensus 484 aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~~--~d~~~la~~i~~ll~ 556 (596)
+++.++-++ +-..+++||+++|+|.|+-...+ ....+.+ ..+.|+.++. -+.+++.++|+++++
T Consensus 344 ~~v~~fvtH--~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~-------~~g~Gv~l~~~~~~~~~l~~av~~ll~ 413 (454)
T 3hbf_A 344 SSVGVFLTH--SGWNSVLECIVGGVPMISRPFFGDQGLNTILTES-------VLEIGVGVDNGVLTKESIKKALELTMS 413 (454)
T ss_dssp TTEEEEEEC--CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHT-------TSCSEEECGGGSCCHHHHHHHHHHHHS
T ss_pred cCcCeEEec--CCcchHHHHHHcCCCEecCcccccHHHHHHHHHH-------hhCeeEEecCCCCCHHHHHHHHHHHHC
Confidence 995444333 34568999999999999965533 1222333 0267877764 368999999999996
No 57
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=97.88 E-value=0.023 Score=60.58 Aligned_cols=134 Identities=7% Similarity=-0.052 Sum_probs=81.6
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCC--C---------------cchHHHHHHHHHcCCCCcEE
Q 043397 405 TVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPV--H---------------WVQKDFEDLANLHNKGTSTR 467 (596)
Q Consensus 405 ~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~--g---------------~~~~~l~~~~~~~~~~~~V~ 467 (596)
+..++++.|.+.. ...+.+.+.+..+.+.+.+++++-...+ | ...+.+.+ +.. ..++.
T Consensus 268 ~~vvyvs~GS~~~-~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~---~~~-~~g~~ 342 (480)
T 2vch_A 268 GSVLYVSFGSGGT-LTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLE---RTK-KRGFV 342 (480)
T ss_dssp TCEEEEECTTTCC-CCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTTTTTCC--CSCGGGGSCTTHHH---HTT-TTEEE
T ss_pred CceEEEecccccC-CCHHHHHHHHHHHHhcCCcEEEEECCccccccccccccccccchhhhcCHHHHH---HhC-CCeEE
Confidence 4566778888753 3456666666666556788776533111 0 01111221 111 12345
Q ss_pred EEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccc-cccCCCCCCCccceEEEeC-
Q 043397 468 ILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTV-FDVDDPSNHEKANGFVFEG- 541 (596)
Q Consensus 468 ~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i-~~~~~~~~~~~~~G~lv~~- 541 (596)
+.+++++. .+|+.+++.++-++ +-..+++||+++|+|.|+-...+ ....+ ++ .+.|+.+..
T Consensus 343 v~~w~Pq~---~vL~h~~v~~fvtH--gG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~--------~G~g~~l~~~ 409 (480)
T 2vch_A 343 IPFWAPQA---QVLAHPSTGGFLTH--CGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSED--------IRAALRPRAG 409 (480)
T ss_dssp EESCCCHH---HHHHSTTEEEEEEC--CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHT--------TCCEECCCCC
T ss_pred EeCccCHH---HHhCCCCcCeEEec--ccchhHHHHHHcCCCEEeccccccchHHHHHHHHH--------hCeEEEeecc
Confidence 55699873 78999996443322 34568999999999999965543 22222 33 467776653
Q ss_pred ----CCHHHHHHHHHHHHH
Q 043397 542 ----IDEGSLNWALDRAFR 556 (596)
Q Consensus 542 ----~d~~~la~~i~~ll~ 556 (596)
-+.+++.++|+++++
T Consensus 410 ~~~~~~~~~l~~av~~vl~ 428 (480)
T 2vch_A 410 DDGLVRREEVARVVKGLME 428 (480)
T ss_dssp TTSCCCHHHHHHHHHHHHT
T ss_pred cCCccCHHHHHHHHHHHhc
Confidence 368999999999995
No 58
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=97.82 E-value=0.0008 Score=66.32 Aligned_cols=94 Identities=11% Similarity=0.057 Sum_probs=65.3
Q ss_pred ccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCC
Q 043397 406 VPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAAD 485 (596)
Q Consensus 406 ~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aD 485 (596)
+.++++.|..++..-.+.+++++... .--.+|.|.. ....+.+++.+++ .+++.+.+++++ +.++|++||
T Consensus 158 ~~ILv~~GG~d~~~l~~~vl~~L~~~---~~i~vv~G~~--~~~~~~l~~~~~~---~~~v~v~~~~~~--m~~~m~~aD 227 (282)
T 3hbm_A 158 YDFFICMGGTDIKNLSLQIASELPKT---KIISIATSSS--NPNLKKLQKFAKL---HNNIRLFIDHEN--IAKLMNESN 227 (282)
T ss_dssp EEEEEECCSCCTTCHHHHHHHHSCTT---SCEEEEECTT--CTTHHHHHHHHHT---CSSEEEEESCSC--HHHHHHTEE
T ss_pred CeEEEEECCCchhhHHHHHHHHhhcC---CCEEEEECCC--chHHHHHHHHHhh---CCCEEEEeCHHH--HHHHHHHCC
Confidence 34567788766554344455554321 2233566761 2345666666554 347999999988 999999999
Q ss_pred EEEEcCCCCCCchHHHHHHhcCCceEEeC
Q 043397 486 IVLVPSIYEPCGLAQMIGMRYGAVPVVRK 514 (596)
Q Consensus 486 i~l~PS~~E~~gl~~lEAma~G~pvI~s~ 514 (596)
++|.+ .|+++.|++++|+|.|.-.
T Consensus 228 lvI~~-----gG~T~~E~~~~g~P~i~ip 251 (282)
T 3hbm_A 228 KLIIS-----ASSLVNEALLLKANFKAIC 251 (282)
T ss_dssp EEEEE-----SSHHHHHHHHTTCCEEEEC
T ss_pred EEEEC-----CcHHHHHHHHcCCCEEEEe
Confidence 99984 4689999999999999854
No 59
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=97.77 E-value=0.034 Score=58.92 Aligned_cols=134 Identities=11% Similarity=0.030 Sum_probs=82.9
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--
Q 043397 405 TVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA-- 482 (596)
Q Consensus 405 ~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a-- 482 (596)
...++++.|.+...-+.+.+.+++..+.+.+.+++++-........+.+.+.... .+++.+.+++++. .+|+
T Consensus 276 ~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~l~~~~~~~~~~---~~~~~v~~w~pq~---~vL~h~ 349 (463)
T 2acv_A 276 KSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMEL---EGKGMICGWAPQV---EVLAHK 349 (463)
T ss_dssp TCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCCGGGSCTTHHHHHHH---HCSEEEESSCCHH---HHHHST
T ss_pred CceEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEECCCcccCChhHHHhhcc---CCCEEEEccCCHH---HHhCCC
Confidence 4466778888763234444555555554557888765441101122333322210 2468888999884 4676
Q ss_pred hCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----cccc-ccccCCCCCCCccceEEE-e-------CCCHHHHHH
Q 043397 483 AADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADT-VFDVDDPSNHEKANGFVF-E-------GIDEGSLNW 549 (596)
Q Consensus 483 ~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~-i~~~~~~~~~~~~~G~lv-~-------~~d~~~la~ 549 (596)
++|++|. -+-..+++||+++|+|.|+-...+ .... +++ .+.|+.+ + .-+.+++.+
T Consensus 350 ~~~~fvt----h~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~--------~g~g~~l~~~~~~~~~~~~~~~l~~ 417 (463)
T 2acv_A 350 AIGGFVS----HCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKE--------WGVGLGLRVDYRKGSDVVAAEEIEK 417 (463)
T ss_dssp TEEEEEE----CCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHT--------SCCEEESCSSCCTTCCCCCHHHHHH
T ss_pred ccCeEEe----cCCchhHHHHHHcCCCeeeccchhhhHHHHHHHHHH--------cCeEEEEecccCCCCccccHHHHHH
Confidence 6777873 355679999999999999965543 1222 233 4678877 2 237899999
Q ss_pred HHHHHHH
Q 043397 550 ALDRAFR 556 (596)
Q Consensus 550 ~i~~ll~ 556 (596)
+|+++++
T Consensus 418 ai~~ll~ 424 (463)
T 2acv_A 418 GLKDLMD 424 (463)
T ss_dssp HHHHHTC
T ss_pred HHHHHHh
Confidence 9999984
No 60
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=97.50 E-value=0.044 Score=55.64 Aligned_cols=108 Identities=14% Similarity=0.112 Sum_probs=77.6
Q ss_pred hhcCCCCCCCccE-EEEEecccccCC--HHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEecc
Q 043397 396 KGLGLKSEGTVPL-VVCITRLVAQKG--LHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMY 472 (596)
Q Consensus 396 ~~l~l~~~~~~~~-il~iGrl~~~KG--i~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~ 472 (596)
+..|+. +++++ ++..|.-.+.|. .+.+.++++.+.+.+.+++++|+ ....+..++..+..+ ...+.+.|..
T Consensus 177 ~~~g~~--~~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g~~vvl~g~---~~e~~~~~~i~~~~~-~~~~~l~g~~ 250 (349)
T 3tov_A 177 SSHGLT--DTDILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGG---PMDLEMVQPVVEQME-TKPIVATGKF 250 (349)
T ss_dssp HHTTCC--TTCCEEEEECCCSSGGGCCCHHHHHHHHHHHHHHTCEEEECCC---TTTHHHHHHHHHTCS-SCCEECTTCC
T ss_pred HHcCCC--CCCCEEEEeCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEeC---cchHHHHHHHHHhcc-cccEEeeCCC
Confidence 445664 44444 456665445665 46788888888777899999998 555666666666554 2336667889
Q ss_pred CHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeC
Q 043397 473 SEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRK 514 (596)
Q Consensus 473 ~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~ 514 (596)
+-.++..+++.||++|.. ..|..-+ |.++|+|+|+--
T Consensus 251 sl~e~~ali~~a~~~i~~----DsG~~Hl-Aaa~g~P~v~lf 287 (349)
T 3tov_A 251 QLGPLAAAMNRCNLLITN----DSGPMHV-GISQGVPIVALY 287 (349)
T ss_dssp CHHHHHHHHHTCSEEEEE----SSHHHHH-HHTTTCCEEEEC
T ss_pred CHHHHHHHHHhCCEEEEC----CCCHHHH-HHhcCCCEEEEE
Confidence 999999999999999975 3455555 899999999943
No 61
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=97.04 E-value=0.0099 Score=60.24 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=77.5
Q ss_pred HHHHHhhcCCCCCCCc-cEEEEEec-ccccCCH--HHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCC--CC
Q 043397 391 KYYIQKGLGLKSEGTV-PLVVCITR-LVAQKGL--HLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNK--GT 464 (596)
Q Consensus 391 k~~~~~~l~l~~~~~~-~~il~iGr-l~~~KGi--~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~--~~ 464 (596)
++.+++.+++. .++ .+++..|. ..+.|.. +.+.++++.+.+.++++++.|. +...+..+++.+..+. ..
T Consensus 167 ~~~~~~~~~~~--~~~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~~~~vvl~g~---~~e~~~~~~i~~~~~~~~~~ 241 (348)
T 1psw_A 167 KSYTCNQFSLS--SERPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGS---AKDHEAGNEILAALNTEQQA 241 (348)
T ss_dssp HHHHHHHTTCC--SSSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHHTTCEEEECCC---GGGHHHHHHHHTTSCHHHHT
T ss_pred HHHHHHHhCCC--CCCcEEEEECCCCccccCCCCHHHHHHHHHHHHHCCCeEEEEeC---hhhHHHHHHHHHhhhhcccc
Confidence 34456677764 334 45566676 5566664 4888888888777899999997 5555555555543221 12
Q ss_pred c-EEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEe
Q 043397 465 S-TRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVR 513 (596)
Q Consensus 465 ~-V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s 513 (596)
+ +.+.|..+-.++..+++.||++|... .|..- .|.|+|+|+|+-
T Consensus 242 ~~~~l~g~~sl~e~~ali~~a~l~I~~D----sg~~H-lAaa~g~P~v~l 286 (348)
T 1psw_A 242 WCRNLAGETQLDQAVILIAACKAIVTND----SGLMH-VAAALNRPLVAL 286 (348)
T ss_dssp TEEECTTTSCHHHHHHHHHTSSEEEEES----SHHHH-HHHHTTCCEEEE
T ss_pred ceEeccCcCCHHHHHHHHHhCCEEEecC----CHHHH-HHHHcCCCEEEE
Confidence 3 45668899899999999999999764 33333 399999999983
No 62
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=96.82 E-value=0.012 Score=62.35 Aligned_cols=132 Identities=13% Similarity=0.052 Sum_probs=83.0
Q ss_pred CCccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEE-EecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH
Q 043397 404 GTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMIL-LGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA 482 (596)
Q Consensus 404 ~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvI-vG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a 482 (596)
++..+++..|.+... ..+.+.+.+..+.+.+.++++ +|........+.+.+. . .+++.+.+++++. .+|+
T Consensus 270 ~~~vv~vs~GS~~~~-~~~~~~~~~~~l~~~~~~~lw~~~~~~~~~l~~~~~~~---~--~~~~~v~~w~pq~---~vL~ 340 (456)
T 2c1x_A 270 PTSVVYISFGTVTTP-PPAEVVALSEALEASRVPFIWSLRDKARVHLPEGFLEK---T--RGYGMVVPWAPQA---EVLA 340 (456)
T ss_dssp TTCEEEEECCSSCCC-CHHHHHHHHHHHHHHTCCEEEECCGGGGGGSCTTHHHH---H--TTTEEEESCCCHH---HHHT
T ss_pred CcceEEEecCccccC-CHHHHHHHHHHHHhcCCeEEEEECCcchhhCCHHHHhh---c--CCceEEecCCCHH---HHhc
Confidence 345667778887643 345555555555445677665 4541000111222221 1 3578888999983 5788
Q ss_pred --hCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCC----ccccccccCCCCCCCc-cceEEEeC--CCHHHHHHHHHH
Q 043397 483 --AADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGG----LADTVFDVDDPSNHEK-ANGFVFEG--IDEGSLNWALDR 553 (596)
Q Consensus 483 --~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~i~~~~~~~~~~~-~~G~lv~~--~d~~~la~~i~~ 553 (596)
++|++|. -+-..+++||+++|+|.|+-...+ ....+.+ . +.|+.++. -+.+++.++|++
T Consensus 341 h~~~~~fvt----h~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~--------~~g~g~~l~~~~~~~~~l~~~i~~ 408 (456)
T 2c1x_A 341 HEAVGAFVT----HCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVED--------VLEIGVRIEGGVFTKSGLMSCFDQ 408 (456)
T ss_dssp STTEEEEEE----CCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHH--------TSCCEEECGGGSCCHHHHHHHHHH
T ss_pred CCcCCEEEe----cCCcchHHHHHHhCceEEecCChhhHHHHHHHHHH--------HhCeEEEecCCCcCHHHHHHHHHH
Confidence 6778883 355678999999999999965433 2223333 3 67777753 268999999999
Q ss_pred HHH
Q 043397 554 AFR 556 (596)
Q Consensus 554 ll~ 556 (596)
+++
T Consensus 409 ll~ 411 (456)
T 2c1x_A 409 ILS 411 (456)
T ss_dssp HHH
T ss_pred HHC
Confidence 998
No 63
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=96.52 E-value=0.046 Score=58.22 Aligned_cols=143 Identities=6% Similarity=-0.038 Sum_probs=86.9
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEE-ecCC-CCc---chHHHHHHHHHcCCCCcEEEEeccCHHHHHH
Q 043397 405 TVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILL-GNSP-VHW---VQKDFEDLANLHNKGTSTRILLMYSEELSHM 479 (596)
Q Consensus 405 ~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIv-G~~~-~g~---~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~ 479 (596)
...++++.|.+.. ...+.+.+.+..+.+.+.+++++ |... .|. ..+.+.+. . .+++.+.+++++. .
T Consensus 295 ~~vv~vs~GS~~~-~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~---~--~~~~~v~~~~pq~---~ 365 (482)
T 2pq6_A 295 GSVVYVNFGSTTV-MTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNE---I--ADRGLIASWCPQD---K 365 (482)
T ss_dssp TCEEEEECCSSSC-CCHHHHHHHHHHHHHTTCEEEEECCGGGSTTTGGGSCHHHHHH---H--TTTEEEESCCCHH---H
T ss_pred CceEEEecCCccc-CCHHHHHHHHHHHHhcCCcEEEEEcCCccccccccCcHhHHHh---c--CCCEEEEeecCHH---H
Confidence 3456677787643 24455555555555567888765 4310 011 22333322 2 3579999999984 4
Q ss_pred HHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCc----ccccc-ccCCCCCCCccceEEEe-CCCHHHHHHHHHH
Q 043397 480 LYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGL----ADTVF-DVDDPSNHEKANGFVFE-GIDEGSLNWALDR 553 (596)
Q Consensus 480 ~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~----~e~i~-~~~~~~~~~~~~G~lv~-~~d~~~la~~i~~ 553 (596)
+|+.+++.++-+ -+-..+++||+++|+|.|+-...+- ...+. + .+.|+.++ .-+.+++.++|++
T Consensus 366 ~L~h~~~~~~vt--h~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~--------~G~g~~l~~~~~~~~l~~~i~~ 435 (482)
T 2pq6_A 366 VLNHPSIGGFLT--HCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNE--------WEIGMEIDTNVKREELAKLINE 435 (482)
T ss_dssp HHTSTTEEEEEE--CCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHT--------SCCEEECCSSCCHHHHHHHHHH
T ss_pred HhcCCCCCEEEe--cCCcchHHHHHHcCCCEEecCcccchHHHHHHHHHH--------hCEEEEECCCCCHHHHHHHHHH
Confidence 787766633222 2456789999999999999765431 12121 2 46777775 2378999999999
Q ss_pred HHHhccCCHHHHHHHHHH
Q 043397 554 AFRHFIDKPEEWNRIVQK 571 (596)
Q Consensus 554 ll~~~~~~~~~~~~~~~~ 571 (596)
+++ +++ .++++++
T Consensus 436 ll~----~~~-~~~~r~~ 448 (482)
T 2pq6_A 436 VIA----GDK-GKKMKQK 448 (482)
T ss_dssp HHT----SHH-HHHHHHH
T ss_pred HHc----CCc-HHHHHHH
Confidence 997 764 2344433
No 64
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=96.35 E-value=0.022 Score=64.07 Aligned_cols=189 Identities=10% Similarity=0.044 Sum_probs=107.1
Q ss_pred cccCeEEEeChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCC--CCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcC
Q 043397 322 VYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDT--VIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLG 399 (596)
Q Consensus 322 ~~ad~vi~vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~--~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~ 399 (596)
...|.+++.|+...+.+.+ .++.+..++. .-|..- ..+... .....++.+++.++
T Consensus 477 ~~~D~~~~~s~~~~~~~~~------~f~~~~~~i~--~~G~PR~D~l~~~~---------------~~~~~~~~~~~~~~ 533 (729)
T 3l7i_A 477 SRWDYLISPNRYSTEIFRS------AFWMDEERIL--EIGYPRNDVLVNRA---------------NDQEYLDEIRTHLN 533 (729)
T ss_dssp TTCSEEEESSHHHHHHHHH------HTCCCGGGEE--ESCCGGGHHHHHST---------------TCHHHHHHHHHHTT
T ss_pred ccCCEEEeCCHHHHHHHHH------HhCCCcceEE--EcCCCchHHHhccc---------------chHHHHHHHHHHhC
Confidence 4468999999877776432 2333334443 334321 111111 11234567888999
Q ss_pred CCCCCCccEEEEEeccccc----CC-----HHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEe
Q 043397 400 LKSEGTVPLVVCITRLVAQ----KG-----LHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILL 470 (596)
Q Consensus 400 l~~~~~~~~il~iGrl~~~----KG-----i~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g 470 (596)
++ +++++|+|+-..... +| +..-++.+.+....+..+++-.. +. +.......+..+.+.-..
T Consensus 534 ~~--~~kk~ILyaPT~r~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~li~r~H----p~---~~~~~~~~~~~~~~~~~~ 604 (729)
T 3l7i_A 534 LP--SDKKVIMYAPTWRDDEFVSKGKYLFELKIDLDNLYKELGDDYVILLRMH----YL---ISNALDLSGYENFAIDVS 604 (729)
T ss_dssp CC--SSCEEEEECCCCCGGGCCGGGSSCCCCTTCHHHHHHHHTTTEEEEECCC----HH---HHTTCCCTTCTTTEEECT
T ss_pred CC--CCCeEEEEeeeeeCCccccccccccchhhHHHHHHHHcCCCeEEEEecC----cc---hhccccccccCCcEEeCC
Confidence 87 788999999876443 11 11223444333334666666554 11 111111112233444444
Q ss_pred ccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeC--CCCc----cccccccCCCCCCCccceEEEeCCCH
Q 043397 471 MYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRK--TGGL----ADTVFDVDDPSNHEKANGFVFEGIDE 544 (596)
Q Consensus 471 ~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~--~gg~----~e~i~~~~~~~~~~~~~G~lv~~~d~ 544 (596)
..++ +.+++..||++|.= ++-+++|++..++|+|-.. ..-. +.+..++.. ...|-++. |.
T Consensus 605 ~~~d--i~~ll~~aD~lITD-----ySSv~fD~~~l~kPiif~~~D~~~Y~~~~rg~y~d~~~-----~~pg~~~~--~~ 670 (729)
T 3l7i_A 605 NYND--VSELFLISDCLITD-----YSSVMFDYGILKRPQFFFAYDIDKYDKGLRGFYMNYME-----DLPGPIYT--EP 670 (729)
T ss_dssp TCSC--HHHHHHTCSEEEES-----SCTHHHHHGGGCCCEEEECTTTTTTTSSCCSBSSCTTS-----SSSSCEES--SH
T ss_pred CCcC--HHHHHHHhCEEEee-----chHHHHhHHhhCCCEEEecCCHHHHhhccCCcccChhH-----hCCCCeEC--CH
Confidence 4444 88899999999953 7889999999999999852 1111 111111110 23466665 78
Q ss_pred HHHHHHHHHHHH
Q 043397 545 GSLNWALDRAFR 556 (596)
Q Consensus 545 ~~la~~i~~ll~ 556 (596)
++|.++|.....
T Consensus 671 ~eL~~~i~~~~~ 682 (729)
T 3l7i_A 671 YGLAKELKNLDK 682 (729)
T ss_dssp HHHHHHHTTHHH
T ss_pred HHHHHHHhhhhc
Confidence 999999988775
No 65
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=95.89 E-value=0.009 Score=56.49 Aligned_cols=74 Identities=9% Similarity=0.010 Sum_probs=52.6
Q ss_pred cEEEEeccCHHHHHHHHH-hCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCc--------cccccccCCCCCCCccc
Q 043397 465 STRILLMYSEELSHMLYA-AADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGL--------ADTVFDVDDPSNHEKAN 535 (596)
Q Consensus 465 ~V~~~g~~~~~~l~~~~a-~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~--------~e~i~~~~~~~~~~~~~ 535 (596)
++...++.++ +..+|+ .||++|.= +-..+++|++++|+|.|.-..... .+.+.+ .+.
T Consensus 115 ~v~v~~f~~~--m~~~l~~~AdlvIsh----aGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~--------~G~ 180 (224)
T 2jzc_A 115 KVIGFDFSTK--MQSIIRDYSDLVISH----AGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVE--------LGY 180 (224)
T ss_dssp EEEECCSSSS--HHHHHHHHCSCEEES----SCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHH--------HSC
T ss_pred eEEEeeccch--HHHHHHhcCCEEEEC----CcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHH--------CCC
Confidence 4666677776 889999 99999953 567899999999999999654431 222333 234
Q ss_pred eEEEeCCCHHHHHHHHHHHH
Q 043397 536 GFVFEGIDEGSLNWALDRAF 555 (596)
Q Consensus 536 G~lv~~~d~~~la~~i~~ll 555 (596)
++++ +++.|.++|.++.
T Consensus 181 ~~~~---~~~~L~~~i~~l~ 197 (224)
T 2jzc_A 181 VWSC---APTETGLIAGLRA 197 (224)
T ss_dssp CCEE---CSCTTTHHHHHHH
T ss_pred EEEc---CHHHHHHHHHHHH
Confidence 5554 5677888887764
No 66
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=94.07 E-value=0.2 Score=50.02 Aligned_cols=98 Identities=16% Similarity=0.055 Sum_probs=68.0
Q ss_pred CccEEEEEecccccCC--HHHHHHHHHHHHHcCCEEEEE-ecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHH
Q 043397 405 TVPLVVCITRLVAQKG--LHLITHAIKRAEELGGQMILL-GNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLY 481 (596)
Q Consensus 405 ~~~~il~iGrl~~~KG--i~~ll~A~~~l~~~~~~lvIv-G~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~ 481 (596)
+..+++..|.-.+.|. .+.+.+.++.+.+.+.++++. |. ..+.+..+++.+.. +++.+.|..+-.++..++
T Consensus 178 ~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~~~~~vvl~~g~---~~e~~~~~~i~~~~---~~~~l~g~~sl~el~ali 251 (326)
T 2gt1_A 178 GEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGA---PHEEERAKRLAEGF---AYVEVLPKMSLEGVARVL 251 (326)
T ss_dssp TSEEEEECCCSSGGGSCCHHHHHHHHHHTTTTCCEEEECCSS---HHHHHHHHHHHTTC---TTEEECCCCCHHHHHHHH
T ss_pred CCEEEEEeCCCCccccCCHHHHHHHHHHHHHCCCcEEEecCC---HHHHHHHHHHHhhC---CcccccCCCCHHHHHHHH
Confidence 3445566665455565 457788887776668898887 54 33344445554433 346777999999999999
Q ss_pred HhCCEEEEcCCCCCCchHHHHHHhcCCceEEe
Q 043397 482 AAADIVLVPSIYEPCGLAQMIGMRYGAVPVVR 513 (596)
Q Consensus 482 a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s 513 (596)
+.||++|.. ..|..=+ |.|.|+|+|+-
T Consensus 252 ~~a~l~I~~----DSG~~Hl-Aaa~g~P~v~l 278 (326)
T 2gt1_A 252 AGAKFVVSV----DTGLSHL-TAALDRPNITV 278 (326)
T ss_dssp HTCSEEEEE----SSHHHHH-HHHTTCCEEEE
T ss_pred HhCCEEEec----CCcHHHH-HHHcCCCEEEE
Confidence 999999965 3455555 77899999984
No 67
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=92.19 E-value=10 Score=39.68 Aligned_cols=96 Identities=16% Similarity=0.060 Sum_probs=59.4
Q ss_pred chHHHHHHHHHcCCCCcEEEEeccCHHHHHH--HHHhCCEEEEcCCC-CCCchHHHHHHhcCCceEEeC--CCCcccccc
Q 043397 449 VQKDFEDLANLHNKGTSTRILLMYSEELSHM--LYAAADIVLVPSIY-EPCGLAQMIGMRYGAVPVVRK--TGGLADTVF 523 (596)
Q Consensus 449 ~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~--~~a~aDi~l~PS~~-E~~gl~~lEAma~G~pvI~s~--~gg~~e~i~ 523 (596)
..+..+.+++++. +-+.+.|.-.+.++.. =+..+|+++..+.. |.-=++.+-|-.+|++-+.+. .....++++
T Consensus 266 d~~r~~~la~~l~--~~~Vi~GD~td~~~L~ee~i~~~D~~ia~T~~De~Ni~~~llAk~~gv~kvIa~vn~~~~~~l~~ 343 (461)
T 4g65_A 266 NLQRAEKLSEELE--NTIVFCGDAADQELLTEENIDQVDVFIALTNEDETNIMSAMLAKRMGAKKVMVLIQRGAYVDLVQ 343 (461)
T ss_dssp CHHHHHHHHHHCT--TSEEEESCTTCHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHC
T ss_pred CHHHHHHHHHHCC--CceEEeccccchhhHhhcCchhhcEEEEcccCcHHHHHHHHHHHHcCCccccccccccchhhhhh
Confidence 3466677777763 3467778777655543 24788999987765 555566778888998877753 334555555
Q ss_pred ccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 524 DVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 524 ~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
. .+-...+.| ....+..|.+.+.
T Consensus 344 ~--------~gid~visp--~~~~a~~I~~~i~ 366 (461)
T 4g65_A 344 G--------GVIDVAISP--QQATISALLTHVR 366 (461)
T ss_dssp S--------SSSCEEECH--HHHHHHHHHHHHH
T ss_pred c--------cccceeeCH--HHHHHHHHHHHhh
Confidence 4 234445543 3345566665554
No 68
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=85.18 E-value=15 Score=30.56 Aligned_cols=110 Identities=5% Similarity=-0.006 Sum_probs=69.2
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHhc-----
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMRY----- 506 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma~----- 506 (596)
..+++|+.+. ......+....++.|. .+...-+.++....+. ..|++++-... +.-|+.+++.+..
T Consensus 8 ~~~iLivd~~--~~~~~~l~~~L~~~g~----~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~ 81 (147)
T 2zay_A 8 WWRIMLVDTQ--LPALAASISALSQEGF----DIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTA 81 (147)
T ss_dssp CEEEEEECTT--GGGGHHHHHHHHHHTE----EEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTT
T ss_pred CceEEEEeCC--HHHHHHHHHHHHHcCC----eEEEeCCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccC
Confidence 4577777762 3445566666555442 3334444455555554 36888876543 4457777777764
Q ss_pred CCceEE-eCCCCcc---ccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhc
Q 043397 507 GAVPVV-RKTGGLA---DTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHF 558 (596)
Q Consensus 507 G~pvI~-s~~gg~~---e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~ 558 (596)
.+|+|+ +...... +.+.. |..+++..|.+.++|...|.+++...
T Consensus 82 ~~pii~ls~~~~~~~~~~~~~~--------g~~~~l~kp~~~~~L~~~i~~~~~~~ 129 (147)
T 2zay_A 82 SIPVIALSGRATAKEEAQLLDM--------GFIDFIAKPVNAIRLSARIKRVLKLL 129 (147)
T ss_dssp TSCEEEEESSCCHHHHHHHHHH--------TCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHhC--------CCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 567776 4443322 22333 67899999999999999999998744
No 69
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=83.83 E-value=17 Score=30.06 Aligned_cols=108 Identities=15% Similarity=0.198 Sum_probs=69.4
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh---CCEEEEcCCC-C-CCchHHHHHHh--cC
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA---ADIVLVPSIY-E-PCGLAQMIGMR--YG 507 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~---aDi~l~PS~~-E-~~gl~~lEAma--~G 507 (596)
+.+++|+.+. ......+....++.|. .+....+.++....+.. .|++++-... + .-|+.+++.+. ..
T Consensus 5 ~~~ilivdd~--~~~~~~l~~~L~~~g~----~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~ 78 (140)
T 3h5i_A 5 DKKILIVEDS--KFQAKTIANILNKYGY----TVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISE 78 (140)
T ss_dssp -CEEEEECSC--HHHHHHHHHHHHHTTC----EEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCC
T ss_pred CcEEEEEeCC--HHHHHHHHHHHHHcCC----EEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCC
Confidence 4577777761 3345556666666542 33345566666666643 5888876654 3 56777766654 36
Q ss_pred CceEE-eCCCC---ccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 508 AVPVV-RKTGG---LADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 508 ~pvI~-s~~gg---~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
+|+|+ +.... ..+.... |..+|+..|.+.++|..+|.+++.
T Consensus 79 ~~ii~ls~~~~~~~~~~~~~~--------g~~~~l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 79 LPVVFLTAHTEPAVVEKIRSV--------TAYGYVMKSATEQVLITIVEMALR 123 (140)
T ss_dssp CCEEEEESSSSCCCCGGGGGS--------CEEEEEETTCCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHhC--------CCcEEEeCCCCHHHHHHHHHHHHH
Confidence 77776 43333 2233333 688999999999999999999987
No 70
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=83.19 E-value=12 Score=31.30 Aligned_cols=111 Identities=7% Similarity=0.015 Sum_probs=70.9
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHhc-----
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMRY----- 506 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma~----- 506 (596)
..+++|+.+. ......++...++.+. .+.+...-+.++....+.. .|++++-... +.-|+.+++.+..
T Consensus 5 ~~~ILivdd~--~~~~~~l~~~L~~~~~--~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~ 80 (144)
T 3kht_A 5 SKRVLVVEDN--PDDIALIRRVLDRKDI--HCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQ 80 (144)
T ss_dssp CEEEEEECCC--HHHHHHHHHHHHHTTC--CEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTT
T ss_pred CCEEEEEeCC--HHHHHHHHHHHHhcCC--CeeEEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhccccc
Confidence 4567777761 3445566666666544 2334444555556666654 5788776543 4457777777754
Q ss_pred CCceEE-eCCCCcc---ccccccCCCCCCCccceEEEeCC-CHHHHHHHHHHHHHh
Q 043397 507 GAVPVV-RKTGGLA---DTVFDVDDPSNHEKANGFVFEGI-DEGSLNWALDRAFRH 557 (596)
Q Consensus 507 G~pvI~-s~~gg~~---e~i~~~~~~~~~~~~~G~lv~~~-d~~~la~~i~~ll~~ 557 (596)
.+|+|+ +...... +.+.. |..+++..|. +.++|.++|.++++.
T Consensus 81 ~~pii~~s~~~~~~~~~~~~~~--------ga~~~l~Kp~~~~~~l~~~i~~~l~~ 128 (144)
T 3kht_A 81 HTPIVILTDNVSDDRAKQCMAA--------GASSVVDKSSNNVTDFYGRIYAIFSY 128 (144)
T ss_dssp TCCEEEEETTCCHHHHHHHHHT--------TCSEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHc--------CCCEEEECCCCcHHHHHHHHHHHHHH
Confidence 577776 4333322 23333 6789999999 999999999999874
No 71
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=82.47 E-value=13 Score=30.47 Aligned_cols=110 Identities=7% Similarity=0.009 Sum_probs=69.6
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh---------CCEEEEcCCC-CCCchHHHHHH
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA---------ADIVLVPSIY-EPCGLAQMIGM 504 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~---------aDi~l~PS~~-E~~gl~~lEAm 504 (596)
+.+++|+.+. ......+....++.+.. ......-+.++....+.. .|++++-... +.-|+.+++.+
T Consensus 2 ~~~ilivdd~--~~~~~~l~~~L~~~~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 77 (140)
T 1k68_A 2 HKKIFLVEDN--KADIRLIQEALANSTVP--HEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEI 77 (140)
T ss_dssp CCEEEEECCC--HHHHHHHHHHHHTCSSC--CEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHH
T ss_pred CCeEEEEeCC--HHHHHHHHHHHHhcCCC--ceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHH
Confidence 3467777761 33455566666655432 233344455556666664 6888876543 44567777766
Q ss_pred h-----cCCceEE-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 505 R-----YGAVPVV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 505 a-----~G~pvI~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
. ..+|+|+ +..... .+.... |..+++..|.+.++|...|.+++.
T Consensus 78 ~~~~~~~~~pii~ls~~~~~~~~~~~~~~--------g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 78 KSDPTLKRIPVVVLSTSINEDDIFHSYDL--------HVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp HHSTTGGGSCEEEEESCCCHHHHHHHHHT--------TCSEEEECCSSHHHHHHHHHHHHH
T ss_pred HcCcccccccEEEEecCCcHHHHHHHHHh--------chhheecCCCCHHHHHHHHHHHHH
Confidence 5 4567776 443332 222333 678999999999999999999886
No 72
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=82.38 E-value=1.1 Score=43.77 Aligned_cols=32 Identities=31% Similarity=0.466 Sum_probs=28.1
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||||+. ||.|-.-..|++.|.++||+|++++.
T Consensus 1 MkILVT----------GatGfIG~~L~~~L~~~G~~V~~l~R 32 (298)
T 4b4o_A 1 MRVLVG----------GGTGFIGTALTQLLNARGHEVTLVSR 32 (298)
T ss_dssp CEEEEE----------TTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEE----------CCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 898765 88888888999999999999999974
No 73
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=81.93 E-value=20 Score=29.51 Aligned_cols=110 Identities=11% Similarity=0.073 Sum_probs=68.5
Q ss_pred cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHhc----
Q 043397 434 LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMRY---- 506 (596)
Q Consensus 434 ~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma~---- 506 (596)
...+++|+.+. ......+....++.+. .+...-+.++....+.. .|++++-... +.-|+.+++.+..
T Consensus 6 ~~~~iLivdd~--~~~~~~l~~~L~~~g~----~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~ 79 (142)
T 3cg4_A 6 HKGDVMIVDDD--AHVRIAVKTILSDAGF----HIISADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLE 79 (142)
T ss_dssp CCCEEEEECSC--HHHHHHHHHHHHHTTC----EEEEESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCC
T ss_pred CCCeEEEEcCC--HHHHHHHHHHHHHCCe----EEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhccc
Confidence 35677777761 3344556666655442 33344455556666654 4777765543 4457777777654
Q ss_pred -CCceEE-eCCCC---ccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 507 -GAVPVV-RKTGG---LADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 507 -G~pvI~-s~~gg---~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
.+|+|+ +.... ..+.+.. |..+++..|.+.++|...|.+++..
T Consensus 80 ~~~pii~~s~~~~~~~~~~~~~~--------g~~~~l~kp~~~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 80 QGIAIVMLTAKNAPDAKMIGLQE--------YVVDYITKPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp TTEEEEEEECTTCCCCSSTTGGG--------GEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHhc--------CccEEEeCCCCHHHHHHHHHHHHHH
Confidence 456666 43332 2223333 6789999999999999999998863
No 74
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=81.80 E-value=11 Score=31.24 Aligned_cols=107 Identities=10% Similarity=0.219 Sum_probs=67.7
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH----hCCEEEEcCCC-CCCchHHHHHHhc---C
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA----AADIVLVPSIY-EPCGLAQMIGMRY---G 507 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a----~aDi~l~PS~~-E~~gl~~lEAma~---G 507 (596)
.+++|+.+. ......++...++.+. .....-+.++....+. ..|++++-... +.-|+.+++.+.. .
T Consensus 4 ~~ilivdd~--~~~~~~l~~~l~~~g~----~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~ 77 (143)
T 3jte_A 4 AKILVIDDE--STILQNIKFLLEIDGN----EVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPH 77 (143)
T ss_dssp CEEEEECSC--HHHHHHHHHHHHHTTC----EEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTT
T ss_pred CEEEEEcCC--HHHHHHHHHHHHhCCc----eEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCC
Confidence 467777761 3345566666665442 2334445555656665 56888876543 4556666665543 5
Q ss_pred CceEE-eCCCC---ccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 508 AVPVV-RKTGG---LADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 508 ~pvI~-s~~gg---~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
+|+|+ +.... ..+.+.. |..+++..|.+.++|..+|.+++.
T Consensus 78 ~~ii~ls~~~~~~~~~~~~~~--------g~~~~l~kp~~~~~l~~~l~~~~~ 122 (143)
T 3jte_A 78 MAVIILTGHGDLDNAILAMKE--------GAFEYLRKPVTAQDLSIAINNAIN 122 (143)
T ss_dssp CEEEEEECTTCHHHHHHHHHT--------TCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCHHHHHHHHHh--------CcceeEeCCCCHHHHHHHHHHHHH
Confidence 67776 44333 2233333 678999999999999999999986
No 75
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=80.03 E-value=8.9 Score=32.47 Aligned_cols=113 Identities=11% Similarity=0.103 Sum_probs=70.8
Q ss_pred cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCC-CCCCchHHHHHHh-----
Q 043397 434 LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSI-YEPCGLAQMIGMR----- 505 (596)
Q Consensus 434 ~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~-~E~~gl~~lEAma----- 505 (596)
++.+++|+=+. ......++...++.|.. .|. -.-+.++....++. .|++++=-. -+.-|+-+++.+.
T Consensus 11 k~~rILiVDD~--~~~r~~l~~~L~~~G~~-~v~--~a~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~ 85 (134)
T 3to5_A 11 KNMKILIVDDF--STMRRIVKNLLRDLGFN-NTQ--EADDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEEL 85 (134)
T ss_dssp TTCCEEEECSC--HHHHHHHHHHHHHTTCC-CEE--EESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTT
T ss_pred CCCEEEEEeCC--HHHHHHHHHHHHHcCCc-EEE--EECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCC
Confidence 46788888761 34455566666666642 232 23344445555544 578776543 3556788887775
Q ss_pred cCCceEE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 506 YGAVPVV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 506 ~G~pvI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
..+|+|. |..+...+...-.. .|.++|+..|.++++|.++|.++++
T Consensus 86 ~~ipvI~lTa~~~~~~~~~~~~-----~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 86 KHLPVLMITAEAKREQIIEAAQ-----AGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp TTCCEEEEESSCCHHHHHHHHH-----TTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred CCCeEEEEECCCCHHHHHHHHH-----CCCCEEEECCCCHHHHHHHHHHHHh
Confidence 4578876 55554333332111 1789999999999999999998874
No 76
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=79.98 E-value=15 Score=30.95 Aligned_cols=112 Identities=10% Similarity=0.024 Sum_probs=71.4
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH-----------hCCEEEEcCCC-CCCchHHHH
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA-----------AADIVLVPSIY-EPCGLAQMI 502 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a-----------~aDi~l~PS~~-E~~gl~~lE 502 (596)
..+++|+.+. ......+++..++.+....|. ..-+.++....+. ..|++++-... +.-|+.+++
T Consensus 4 ~~~ILivddd--~~~~~~l~~~L~~~g~~~~v~--~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~ 79 (152)
T 3heb_A 4 SVTIVMIEDD--LGHARLIEKNIRRAGVNNEII--AFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILK 79 (152)
T ss_dssp -CEEEEECCC--HHHHHHHHHHHHHTTCCCCEE--EESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHH
T ss_pred CceEEEEeCC--HHHHHHHHHHHHhCCCcceEE--EeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHH
Confidence 4577778761 344566677777665432344 3445555666663 36888876543 556777777
Q ss_pred HHhc-----CCceEE-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhc
Q 043397 503 GMRY-----GAVPVV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHF 558 (596)
Q Consensus 503 Ama~-----G~pvI~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~ 558 (596)
.+.. .+|+|+ +..... .+.+.. |..+++..|.+.++|..+|+++...+
T Consensus 80 ~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~--------g~~~~l~KP~~~~~l~~~i~~~~~~~ 136 (152)
T 3heb_A 80 LVKENPHTRRSPVVILTTTDDQREIQRCYDL--------GANVYITKPVNYENFANAIRQLGLFF 136 (152)
T ss_dssp HHHHSTTTTTSCEEEEESCCCHHHHHHHHHT--------TCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred HHHhcccccCCCEEEEecCCCHHHHHHHHHC--------CCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 7664 567776 443332 223333 67899999999999999999987533
No 77
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=77.81 E-value=16 Score=29.73 Aligned_cols=109 Identities=11% Similarity=0.085 Sum_probs=67.1
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHH-H--hCCEEEEcCC-CCCCchHHHHHHhc----
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLY-A--AADIVLVPSI-YEPCGLAQMIGMRY---- 506 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~-a--~aDi~l~PS~-~E~~gl~~lEAma~---- 506 (596)
..+++|+.+. ......++...++.|.. .+. ...+..+....+ + ..|++++-.. -+.-|+.+++.+..
T Consensus 5 ~~~iLivdd~--~~~~~~l~~~L~~~g~~-~v~--~~~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~ 79 (129)
T 3h1g_A 5 SMKLLVVDDS--STMRRIIKNTLSRLGYE-DVL--EAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRF 79 (129)
T ss_dssp -CCEEEECSC--HHHHHHHHHHHHHTTCC-CEE--EESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTC
T ss_pred CcEEEEEeCC--HHHHHHHHHHHHHcCCc-EEE--EeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence 3567777761 33455666666665532 232 233444444444 2 3688886544 35567788887753
Q ss_pred -CCceEE-eCCCCcc---ccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 507 -GAVPVV-RKTGGLA---DTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 507 -G~pvI~-s~~gg~~---e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
.+|+|. |...... +.+.. |..+|+..|.++++|..+|+.++.
T Consensus 80 ~~~pii~~s~~~~~~~~~~~~~~--------g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 80 KEIPIIMITAEGGKAEVITALKA--------GVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp TTCCEEEEESCCSHHHHHHHHHH--------TCCEEEESCCCHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCChHHHHHHHHc--------CccEEEeCCCCHHHHHHHHHHHhc
Confidence 567776 4444322 23333 678999999999999999998875
No 78
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=77.56 E-value=25 Score=29.71 Aligned_cols=110 Identities=9% Similarity=0.099 Sum_probs=69.4
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHh-----c
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMR-----Y 506 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma-----~ 506 (596)
..+++|+.+. ......+.+..++.|. .+...-+.++....+.. .|++++-... +.-|+.+++.+. .
T Consensus 7 ~~~ILivdd~--~~~~~~l~~~L~~~g~----~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~ 80 (154)
T 3gt7_A 7 AGEILIVEDS--PTQAEHLKHILEETGY----QTEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLR 80 (154)
T ss_dssp CCEEEEECSC--HHHHHHHHHHHHTTTC----EEEEESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTT
T ss_pred CCcEEEEeCC--HHHHHHHHHHHHHCCC----EEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcC
Confidence 4677777761 3344555555555432 33344455556666654 5788776543 455777777765 3
Q ss_pred CCceEE-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhc
Q 043397 507 GAVPVV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHF 558 (596)
Q Consensus 507 G~pvI~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~ 558 (596)
.+|+|+ +..... .+.+.. |..+++..|.+.++|..+|.+++...
T Consensus 81 ~~pii~~s~~~~~~~~~~~~~~--------g~~~~l~KP~~~~~l~~~i~~~l~~~ 128 (154)
T 3gt7_A 81 TIPVILLTILSDPRDVVRSLEC--------GADDFITKPCKDVVLASHVKRLLSGV 128 (154)
T ss_dssp TSCEEEEECCCSHHHHHHHHHH--------CCSEEEESSCCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCChHHHHHHHHC--------CCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 567776 443332 223333 67899999999999999999999754
No 79
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=77.49 E-value=14 Score=30.43 Aligned_cols=109 Identities=13% Similarity=0.070 Sum_probs=67.1
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHhc-----
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMRY----- 506 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma~----- 506 (596)
..+++|+.+. ......++...++.|. .| ...-+.++....+.. .|++++-... +.-|+.+++.+..
T Consensus 6 ~~~iLivdd~--~~~~~~l~~~l~~~g~--~v--~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ 79 (140)
T 3grc_A 6 RPRILICEDD--PDIARLLNLMLEKGGF--DS--DMVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTR 79 (140)
T ss_dssp CSEEEEECSC--HHHHHHHHHHHHHTTC--EE--EEECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGT
T ss_pred CCCEEEEcCC--HHHHHHHHHHHHHCCC--eE--EEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccC
Confidence 3567777661 3344555565555443 23 333344455555543 4788776543 4567777777654
Q ss_pred CCceEEe-CCCCcc----ccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 507 GAVPVVR-KTGGLA----DTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 507 G~pvI~s-~~gg~~----e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
.+|+|+- ...... +.... |..+++..|.+.++|..+|.++++.
T Consensus 80 ~~~ii~~s~~~~~~~~~~~~~~~--------g~~~~l~kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 80 DLAIVVVSANAREGELEFNSQPL--------AVSTWLEKPIDENLLILSLHRAIDN 127 (140)
T ss_dssp TCEEEEECTTHHHHHHHHCCTTT--------CCCEEECSSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCChHHHHHHhhhc--------CCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 6777763 332222 22222 6789999999999999999999973
No 80
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=76.86 E-value=20 Score=33.50 Aligned_cols=99 Identities=12% Similarity=0.181 Sum_probs=54.8
Q ss_pred CCCceeEEEEeecccccccccCHHHHHhHHHHHHHhc--CCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEE
Q 043397 105 DSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSR--GHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNA 182 (596)
Q Consensus 105 ~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~--Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (596)
..++|||+++. .|.+.....+.+++.+. +++|..+....+.....+
T Consensus 19 ~~~~~rI~~l~---------SG~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~~~~----------------------- 66 (229)
T 3auf_A 19 QGHMIRIGVLI---------SGSGTNLQAILDGCREGRIPGRVAVVISDRADAYGLE----------------------- 66 (229)
T ss_dssp BTTCEEEEEEE---------SSCCHHHHHHHHHHHTTSSSEEEEEEEESSTTCHHHH-----------------------
T ss_pred cCCCcEEEEEE---------eCCcHHHHHHHHHHHhCCCCCeEEEEEcCCCchHHHH-----------------------
Confidence 34568999985 23356778888888876 577755543211111000
Q ss_pred EeeeeCCeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHH
Q 043397 183 YHGVVSSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLY 253 (596)
Q Consensus 183 ~~~~~~gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~ 253 (596)
.....|++++.+++. .+.. -..|...+.+.++. .+||+|.+-.|..-+-+.++
T Consensus 67 -~A~~~gIp~~~~~~~-~~~~--------------r~~~~~~~~~~l~~--~~~Dliv~agy~~IL~~~~l 119 (229)
T 3auf_A 67 -RARRAGVDALHMDPA-AYPS--------------RTAFDAALAERLQA--YGVDLVCLAGYMRLVRGPML 119 (229)
T ss_dssp -HHHHTTCEEEECCGG-GSSS--------------HHHHHHHHHHHHHH--TTCSEEEESSCCSCCCHHHH
T ss_pred -HHHHcCCCEEEECcc-cccc--------------hhhccHHHHHHHHh--cCCCEEEEcChhHhCCHHHH
Confidence 112468898876631 1110 01233444555554 69999998876544444443
No 81
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=76.70 E-value=24 Score=29.51 Aligned_cols=110 Identities=7% Similarity=0.048 Sum_probs=66.7
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH---------hCCEEEEcCCC-CCCchHHHHHH
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA---------AADIVLVPSIY-EPCGLAQMIGM 504 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a---------~aDi~l~PS~~-E~~gl~~lEAm 504 (596)
..+++|+.+. ......++...++.+. ...+...-+.++....+. ..|++++-... ..-|+.+++.+
T Consensus 8 ~~~ILivdd~--~~~~~~l~~~L~~~~~--~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l 83 (149)
T 1i3c_A 8 PKVILLVEDS--KADSRLVQEVLKTSTI--DHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEI 83 (149)
T ss_dssp CEEEEEECCC--HHHHHHHHHHHHSCCS--CEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHH
T ss_pred CCeEEEEECC--HHHHHHHHHHHHhcCC--CccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHH
Confidence 3567777761 2234445555554332 123334445555666665 36888876543 34567777776
Q ss_pred hc-----CCceEE-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 505 RY-----GAVPVV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 505 a~-----G~pvI~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
.. .+|+|. +..... .+.+.. |..+|+..|.+.++|..+|++++.
T Consensus 84 ~~~~~~~~~piiils~~~~~~~~~~~~~~--------ga~~~l~KP~~~~~L~~~i~~~~~ 136 (149)
T 1i3c_A 84 KQNPDLKRIPVVVLTTSHNEDDVIASYEL--------HVNCYLTKSRNLKDLFKMVQGIES 136 (149)
T ss_dssp HHCTTTTTSCEEEEESCCCHHHHHHHHHT--------TCSEEEECCSSHHHHHHHHHHHHH
T ss_pred HhCcCcCCCeEEEEECCCChHHHHHHHHc--------CCcEEEECCCCHHHHHHHHHHHHH
Confidence 53 467766 444332 223333 678999999999999999988875
No 82
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=75.88 E-value=19 Score=29.86 Aligned_cols=111 Identities=6% Similarity=0.036 Sum_probs=68.5
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh------------CCEEEEcCCC-CCCchHHH
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA------------ADIVLVPSIY-EPCGLAQM 501 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~------------aDi~l~PS~~-E~~gl~~l 501 (596)
..+++|+.+. ......++...++.+....|. ..-+.++....+.. .|++++-... +.-|+.++
T Consensus 6 ~~~iLivdd~--~~~~~~l~~~L~~~g~~~~v~--~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~ 81 (149)
T 1k66_A 6 TQPLLVVEDS--DEDFSTFQRLLQREGVVNPIY--RCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVL 81 (149)
T ss_dssp TSCEEEECCC--HHHHHHHHHHHHHTTBCSCEE--EECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHH
T ss_pred CccEEEEECC--HHHHHHHHHHHHHcCCCceEE--EECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHH
Confidence 4567777761 334455666666654321333 33444556666653 5888876543 44567777
Q ss_pred HHHh-----cCCceEE-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 502 IGMR-----YGAVPVV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 502 EAma-----~G~pvI~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
+.+. ..+|+|+ +..... .+.... |..+++..|.+.++|...|.+++..
T Consensus 82 ~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~--------g~~~~l~kP~~~~~l~~~i~~~~~~ 138 (149)
T 1k66_A 82 QEIKQDEVLKKIPVVIMTTSSNPKDIEICYSY--------SISSYIVKPLEIDRLTETVQTFIKY 138 (149)
T ss_dssp HHHTTSTTGGGSCEEEEESCCCHHHHHHHHHT--------TCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred HHHHhCcccCCCeEEEEeCCCCHHHHHHHHHC--------CCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 7765 4567776 443332 222333 6789999999999999999998863
No 83
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=75.39 E-value=32 Score=28.08 Aligned_cols=108 Identities=9% Similarity=0.085 Sum_probs=64.5
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEe-ccCHHHHHHHHH--hCCEEEEcCCC--CCCchHHHHHHh--cC
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILL-MYSEELSHMLYA--AADIVLVPSIY--EPCGLAQMIGMR--YG 507 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g-~~~~~~l~~~~a--~aDi~l~PS~~--E~~gl~~lEAma--~G 507 (596)
..+++|+.+. ......+....++.|. ...+ .-+.++....+. ..|++++-... +.-|+.+++.+. ..
T Consensus 9 ~~~iLivdd~--~~~~~~l~~~L~~~g~----~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~ 82 (140)
T 3cg0_A 9 LPGVLIVEDG--RLAAATLRIQLESLGY----DVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGCN 82 (140)
T ss_dssp CCEEEEECCB--HHHHHHHHHHHHHHTC----EEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSC
T ss_pred CceEEEEECC--HHHHHHHHHHHHHCCC----eeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCC
Confidence 4577777761 3334455555555432 3332 334444444443 36888876543 245666665554 47
Q ss_pred CceEE-eCCCCcc---ccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 508 AVPVV-RKTGGLA---DTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 508 ~pvI~-s~~gg~~---e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
+|+|+ +...... +.+.. |..+++..|.+.++|...|.+++.
T Consensus 83 ~~ii~ls~~~~~~~~~~~~~~--------g~~~~l~kp~~~~~l~~~i~~~~~ 127 (140)
T 3cg0_A 83 LPIIFITSSQDVETFQRAKRV--------NPFGYLAKPVAADTLHRSIEMAIH 127 (140)
T ss_dssp CCEEEEECCCCHHHHHHHHTT--------CCSEEEEESCCHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHhc--------CCCEEEeCCCCHHHHHHHHHHHHh
Confidence 78876 4433322 22333 678999999999999999999886
No 84
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=75.34 E-value=30 Score=27.75 Aligned_cols=109 Identities=9% Similarity=0.120 Sum_probs=64.8
Q ss_pred EEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHh-----cCC
Q 043397 437 QMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMR-----YGA 508 (596)
Q Consensus 437 ~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma-----~G~ 508 (596)
+++|+.+. ......+....++.|. .....-+.++....+.. .|++++-... +.-|+.+++.+. ..+
T Consensus 4 ~ILivdd~--~~~~~~l~~~l~~~g~----~v~~~~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~ 77 (122)
T 3gl9_A 4 KVLLVDDS--AVLRKIVSFNLKKEGY----EVIEAENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRI 77 (122)
T ss_dssp EEEEECSC--HHHHHHHHHHHHHTTC----EEEEESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTS
T ss_pred eEEEEeCC--HHHHHHHHHHHHHCCc----EEEEeCCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCC
Confidence 55666651 2334445555555432 22344455556666644 5787775443 455777777764 356
Q ss_pred ceEE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 509 VPVV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 509 pvI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
|+|. |..+.......-.. .|..+|+..|.++++|..+|.+++.
T Consensus 78 pii~~s~~~~~~~~~~~~~-----~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 78 PVIVLTAKGGEEDESLALS-----LGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp CEEEEESCCSHHHHHHHHH-----TTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CEEEEecCCchHHHHHHHh-----cChhhhccCCCCHHHHHHHHHHHhc
Confidence 7776 44444322221111 1678999999999999999998874
No 85
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=74.99 E-value=27 Score=28.70 Aligned_cols=107 Identities=10% Similarity=0.090 Sum_probs=65.3
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHhc-----C
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMRY-----G 507 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma~-----G 507 (596)
.+++|+.+. ......+....++.|. .....-+.++....+.. .|++++-... +.-|+.+++.+.. .
T Consensus 5 ~~iLivdd~--~~~~~~l~~~L~~~g~----~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~ 78 (136)
T 3t6k_A 5 HTLLIVDDD--DTVAEMLELVLRGAGY----EVRRAASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKT 78 (136)
T ss_dssp CEEEEECSC--HHHHHHHHHHHHHTTC----EEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTT
T ss_pred CEEEEEeCC--HHHHHHHHHHHHHCCC----EEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCC
Confidence 466677651 3334455555555432 22334455555555543 4888775543 4457777766643 5
Q ss_pred CceEE-eCCCCcc---ccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 508 AVPVV-RKTGGLA---DTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 508 ~pvI~-s~~gg~~---e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
+|+|. |..+... +.+.. |..+|+..|.+.++|..+|.+++.
T Consensus 79 ~pii~~t~~~~~~~~~~~~~~--------ga~~~l~KP~~~~~L~~~i~~~l~ 123 (136)
T 3t6k_A 79 LPILMLTAQGDISAKIAGFEA--------GANDYLAKPFEPQELVYRVKNILA 123 (136)
T ss_dssp CCEEEEECTTCHHHHHHHHHH--------TCSEEEETTCCHHHHHHHHHHHHH
T ss_pred ccEEEEecCCCHHHHHHHHhc--------CcceEEeCCCCHHHHHHHHHHHHh
Confidence 67776 4443322 22333 678999999999999999999987
No 86
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=74.67 E-value=22 Score=29.09 Aligned_cols=105 Identities=14% Similarity=0.152 Sum_probs=56.0
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCCCCCchHHHHHHhc---CCc
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIYEPCGLAQMIGMRY---GAV 509 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~E~~gl~~lEAma~---G~p 509 (596)
+.+++|+.+. ......+....++.+. .|. ..-+.++....+.. .|++++| +.-|+.+++.+.. .+|
T Consensus 18 ~~~ilivdd~--~~~~~~l~~~L~~~g~--~v~--~~~~~~~al~~l~~~~~dlvi~~---~~~g~~~~~~l~~~~~~~~ 88 (137)
T 2pln_A 18 SMRVLLIEKN--SVLGGEIEKGLNVKGF--MAD--VTESLEDGEYLMDIRNYDLVMVS---DKNALSFVSRIKEKHSSIV 88 (137)
T ss_dssp CSEEEEECSC--HHHHHHHHHHHHHTTC--EEE--EESCHHHHHHHHHHSCCSEEEEC---STTHHHHHHHHHHHSTTSE
T ss_pred CCeEEEEeCC--HHHHHHHHHHHHHcCc--EEE--EeCCHHHHHHHHHcCCCCEEEEc---CccHHHHHHHHHhcCCCcc
Confidence 3455555541 2233344444444332 122 23333334444432 4666622 3345555555542 667
Q ss_pred eEE-eCCCC---ccccccccCCCCCCCccceEEEeCC-CHHHHHHHHHHHHH
Q 043397 510 PVV-RKTGG---LADTVFDVDDPSNHEKANGFVFEGI-DEGSLNWALDRAFR 556 (596)
Q Consensus 510 vI~-s~~gg---~~e~i~~~~~~~~~~~~~G~lv~~~-d~~~la~~i~~ll~ 556 (596)
+|+ +.... ..+.+.. |..+++..|. +.++|..+|.+++.
T Consensus 89 ii~ls~~~~~~~~~~~~~~--------g~~~~l~kP~~~~~~l~~~i~~~~~ 132 (137)
T 2pln_A 89 VLVSSDNPTSEEEVHAFEQ--------GADDYIAKPYRSIKALVARIEARLR 132 (137)
T ss_dssp EEEEESSCCHHHHHHHHHT--------TCSEEEESSCSCHHHHHHHHHHHTC
T ss_pred EEEEeCCCCHHHHHHHHHc--------CCceeeeCCCCCHHHHHHHHHHHHh
Confidence 766 44333 2222333 6789999999 99999999998875
No 87
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=73.75 E-value=23 Score=30.06 Aligned_cols=65 Identities=17% Similarity=0.227 Sum_probs=40.8
Q ss_pred CCEEEEcCCC-CCCchHHHHHHh---cCCceEE-eCCCCcc---ccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHH
Q 043397 484 ADIVLVPSIY-EPCGLAQMIGMR---YGAVPVV-RKTGGLA---DTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAF 555 (596)
Q Consensus 484 aDi~l~PS~~-E~~gl~~lEAma---~G~pvI~-s~~gg~~---e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll 555 (596)
.|++++-... +.-|+.+++.+. ..+|+|+ +...... +.+.. |..+++..|.+.++|.++|.+++
T Consensus 84 ~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~--------g~~~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 84 IDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCLIK--------GAKTFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp CCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHHHT--------TCSEEEESSCCHHHHHHHHHHTT
T ss_pred CCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEeccCcHHHHHHHHHc--------CCCEEEeCCCCHHHHHHHHHHHh
Confidence 4777665443 344555555543 3566666 3333322 22333 67899999999999999998876
Q ss_pred H
Q 043397 556 R 556 (596)
Q Consensus 556 ~ 556 (596)
.
T Consensus 156 ~ 156 (157)
T 3hzh_A 156 V 156 (157)
T ss_dssp C
T ss_pred c
Confidence 3
No 88
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=72.13 E-value=36 Score=27.95 Aligned_cols=113 Identities=11% Similarity=0.008 Sum_probs=67.6
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--------CCEEEEcCCC-CCCchHHHHHHh
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--------ADIVLVPSIY-EPCGLAQMIGMR 505 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--------aDi~l~PS~~-E~~gl~~lEAma 505 (596)
..+++|+.+. ......+....++.+....|... -+.++....+.. .|++++-... +.-|+.+++.+.
T Consensus 7 ~~~ILivdd~--~~~~~~l~~~L~~~g~~~~v~~~--~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~ 82 (143)
T 2qvg_A 7 KVDILYLEDD--EVDIQSVERVFHKISSLIKIEIA--KSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELR 82 (143)
T ss_dssp CCSEEEECCC--HHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHT
T ss_pred CCeEEEEeCC--HHHHHHHHHHHHHhCCCceEEEE--CCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHH
Confidence 4567777761 33445566666665542234433 344556666653 6888876543 445677777765
Q ss_pred -----cCCceEE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 506 -----YGAVPVV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 506 -----~G~pvI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
..+|+|+ +..........-. ..|..+++..|.+.++|.+++.....
T Consensus 83 ~~~~~~~~~ii~ls~~~~~~~~~~~~-----~~g~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 83 DDSSFTDIEVFVLTAAYTSKDKLAFE-----SLNIRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp TSGGGTTCEEEEEESCCCHHHHHHHT-----TTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred cCccccCCcEEEEeCCCCHHHHHHHH-----hcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 4567776 4433322222111 11678999999999999999776554
No 89
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=71.90 E-value=29 Score=28.44 Aligned_cols=110 Identities=8% Similarity=0.043 Sum_probs=65.7
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHH-cCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHhc----
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANL-HNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMRY---- 506 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~-~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma~---- 506 (596)
..+++|+.+. ......+....++ .+. .+ +...-+.++....+.. .|++++-... +.-|+.+++.+..
T Consensus 8 ~~~iLivdd~--~~~~~~l~~~L~~~~~~--~~-v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~ 82 (143)
T 3cnb_A 8 DFSILIIEDD--KEFADMLTQFLENLFPY--AK-IKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPAT 82 (143)
T ss_dssp -CEEEEECSC--HHHHHHHHHHHHHHCTT--CE-EEEECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTT
T ss_pred CceEEEEECC--HHHHHHHHHHHHhccCc--cE-EEEECCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccc
Confidence 4577777761 3344455555555 333 21 2223334445555543 5888776543 4456777777654
Q ss_pred -CCceEE-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 507 -GAVPVV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 507 -G~pvI~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
.+|+|+ +..... .+.+.. |..+++..|.+.++|..+|.+++..
T Consensus 83 ~~~~ii~~s~~~~~~~~~~~~~~--------g~~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 83 ANIIVIAMTGALTDDNVSRIVAL--------GAETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp TTSEEEEEESSCCHHHHHHHHHT--------TCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred cCCcEEEEeCCCCHHHHHHHHhc--------CCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 566666 444332 223333 6789999999999999999999874
No 90
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=71.86 E-value=43 Score=27.94 Aligned_cols=107 Identities=8% Similarity=0.057 Sum_probs=63.9
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh---CCEEEEcCCC-CCCchHHHHHHh---cC
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA---ADIVLVPSIY-EPCGLAQMIGMR---YG 507 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~---aDi~l~PS~~-E~~gl~~lEAma---~G 507 (596)
..+++|+.+. ......+....+ . ...+...-+.++....+.. .|++++-... +.-|+.+++.+. ..
T Consensus 4 ~~~ILivdd~--~~~~~~l~~~L~---~--~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~ 76 (151)
T 3kcn_A 4 NERILLVDDD--YSLLNTLKRNLS---F--DFEVTTCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLISPN 76 (151)
T ss_dssp CCEEEEECSC--HHHHHHHHHHHT---T--TSEEEEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSS
T ss_pred CCeEEEEeCC--HHHHHHHHHHhc---c--CceEEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCC
Confidence 3567777761 222333444332 1 2334444555556666653 3888876543 455666666554 35
Q ss_pred CceEE-eCCCC---ccccccccCCCCCCCc-cceEEEeCCCHHHHHHHHHHHHH
Q 043397 508 AVPVV-RKTGG---LADTVFDVDDPSNHEK-ANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 508 ~pvI~-s~~gg---~~e~i~~~~~~~~~~~-~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
+|+|+ +.... ..+.+.. | ..+++..|.+.++|..+|..++.
T Consensus 77 ~~ii~~s~~~~~~~~~~~~~~--------g~~~~~l~KP~~~~~L~~~i~~~l~ 122 (151)
T 3kcn_A 77 SVYLMLTGNQDLTTAMEAVNE--------GQVFRFLNKPCQMSDIKAAINAGIK 122 (151)
T ss_dssp CEEEEEECGGGHHHHHHHHHH--------TCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHc--------CCeeEEEcCCCCHHHHHHHHHHHHH
Confidence 66665 33332 2233333 4 67999999999999999999997
No 91
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=71.59 E-value=35 Score=28.48 Aligned_cols=78 Identities=15% Similarity=0.132 Sum_probs=48.3
Q ss_pred ccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHhc---CCceEE-eCCCC---ccccccccCCCCCCCccceEEEe
Q 043397 471 MYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMRY---GAVPVV-RKTGG---LADTVFDVDDPSNHEKANGFVFE 540 (596)
Q Consensus 471 ~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma~---G~pvI~-s~~gg---~~e~i~~~~~~~~~~~~~G~lv~ 540 (596)
.-+.++....+.. .|++++-... +.-|+.+++.+.. .+|+|+ +.... ..+.+.. |..+++..
T Consensus 52 ~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~--------g~~~~l~K 123 (150)
T 4e7p_A 52 AKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKA--------GVDAYVLK 123 (150)
T ss_dssp ESSHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHT--------TCSEEEET
T ss_pred ECCHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHC--------CCcEEEec
Confidence 3344445444433 4676665442 4456666665543 566665 43333 2233333 67899999
Q ss_pred CCCHHHHHHHHHHHHH
Q 043397 541 GIDEGSLNWALDRAFR 556 (596)
Q Consensus 541 ~~d~~~la~~i~~ll~ 556 (596)
|.+.++|..+|.+++.
T Consensus 124 p~~~~~l~~~i~~~~~ 139 (150)
T 4e7p_A 124 ERSIADLMQTLHTVLE 139 (150)
T ss_dssp TSCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHc
Confidence 9999999999999986
No 92
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=71.02 E-value=21 Score=30.04 Aligned_cols=66 Identities=12% Similarity=0.093 Sum_probs=42.6
Q ss_pred hCCEEEEcCCC-CCCchHHHHHHhc---CCceEE-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHH
Q 043397 483 AADIVLVPSIY-EPCGLAQMIGMRY---GAVPVV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRA 554 (596)
Q Consensus 483 ~aDi~l~PS~~-E~~gl~~lEAma~---G~pvI~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~l 554 (596)
..|++++-... +.-|+.+++.+.. .+|+|+ +..... .+.+.. |..+++..|.+.++|..+|.++
T Consensus 61 ~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~--------g~~~~l~Kp~~~~~l~~~i~~~ 132 (152)
T 3eul_A 61 LPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQ--------GAAGFLLKDSTRTEIVKAVLDC 132 (152)
T ss_dssp CCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHT--------TCSEEEETTCCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEccCCHHHHHHHHHc--------CCCEEEecCCCHHHHHHHHHHH
Confidence 35676665432 4456666655543 456665 443332 223333 6789999999999999999999
Q ss_pred HH
Q 043397 555 FR 556 (596)
Q Consensus 555 l~ 556 (596)
+.
T Consensus 133 ~~ 134 (152)
T 3eul_A 133 AK 134 (152)
T ss_dssp HH
T ss_pred Hc
Confidence 87
No 93
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=70.45 E-value=29 Score=28.41 Aligned_cols=109 Identities=14% Similarity=0.125 Sum_probs=64.3
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh-------CCEEEEcCCC-CCCchHHHHHHhc-
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA-------ADIVLVPSIY-EPCGLAQMIGMRY- 506 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~-------aDi~l~PS~~-E~~gl~~lEAma~- 506 (596)
.+++|+.+. ......++...+..+.. .|. ...+.++....+.. .|++++-... +.-|+.+++.+..
T Consensus 3 ~~ILivdD~--~~~~~~l~~~L~~~g~~-~v~--~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~ 77 (133)
T 2r25_B 3 VKILVVEDN--HVNQEVIKRMLNLEGIE-NIE--LACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRD 77 (133)
T ss_dssp SCEEEECSC--HHHHHHHHHHHHHTTCC-CEE--EESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHH
T ss_pred ceEEEEcCC--HHHHHHHHHHHHHcCCc-eEE--EECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhh
Confidence 456677661 23344555555544321 222 23344445555543 5888875543 4457777776642
Q ss_pred ---CCceEE-eCCCCcc---ccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 507 ---GAVPVV-RKTGGLA---DTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 507 ---G~pvI~-s~~gg~~---e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
.+|+|. |...... +.... |..+|+..|.+.++|..+|.+++..
T Consensus 78 ~~~~~~ii~lt~~~~~~~~~~~~~~--------ga~~~l~KP~~~~~L~~~l~~~~~~ 127 (133)
T 2r25_B 78 LGYTSPIVALTAFADDSNIKECLES--------GMNGFLSKPIKRPKLKTILTEFCAA 127 (133)
T ss_dssp SCCCSCEEEEESCCSHHHHHHHHHT--------TCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHc--------CCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 456665 4444432 23333 6789999999999999999988763
No 94
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=70.36 E-value=40 Score=26.98 Aligned_cols=108 Identities=11% Similarity=0.158 Sum_probs=64.8
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHh---cCC
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMR---YGA 508 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma---~G~ 508 (596)
+.+++|+.+. ......+....+..+. .+. ..-+.++....+.. .|++++-... ..-|+.+++.+. ..+
T Consensus 3 ~~~ilivdd~--~~~~~~l~~~l~~~~~--~v~--~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ 76 (126)
T 1dbw_A 3 DYTVHIVDDE--EPVRKSLAFMLTMNGF--AVK--MHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINI 76 (126)
T ss_dssp CCEEEEEESS--HHHHHHHHHHHHHTTC--EEE--EESCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCC
T ss_pred CCEEEEEcCC--HHHHHHHHHHHHhCCc--EEE--EeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCC
Confidence 3467777761 2334455555555432 233 34455555555544 5777765443 345666666654 356
Q ss_pred ceEE-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 509 VPVV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 509 pvI~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
|+|. |..... .+.+.. |..+++..|.+.++|..+|.+++.
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~--------ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 77 PSIVITGHGDVPMAVEAMKA--------GAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp CEEEEECTTCHHHHHHHHHT--------TCSEEEESSCCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCHHHHHHHHHh--------CHHHheeCCCCHHHHHHHHHHHHH
Confidence 7776 444332 223333 678999999999999999998875
No 95
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=69.33 E-value=23 Score=32.61 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=23.3
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCC--eEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGH--TVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh--~V~vi~ 149 (596)
+|||+++. .|.+..+..+.+++.+.+| +|..+.
T Consensus 1 m~rI~vl~---------SG~g~~~~~~l~~l~~~~~~~~i~~Vv 35 (216)
T 2ywr_A 1 MLKIGVLV---------SGRGSNLQAIIDAIESGKVNASIELVI 35 (216)
T ss_dssp CEEEEEEE---------CSCCHHHHHHHHHHHTTSSCEEEEEEE
T ss_pred CCEEEEEE---------eCCcHHHHHHHHHHHhCCCCCeEEEEE
Confidence 47898884 3335677888999988888 654443
No 96
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=69.32 E-value=30 Score=28.15 Aligned_cols=108 Identities=9% Similarity=0.097 Sum_probs=67.6
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh---CCEEEEcCC-CCCCchHHHHHHhc----
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA---ADIVLVPSI-YEPCGLAQMIGMRY---- 506 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~---aDi~l~PS~-~E~~gl~~lEAma~---- 506 (596)
..+++|+.+. ......++...++.+. .|. ...+.++....+.. .|++++-.. .+.-|+.+++.+..
T Consensus 7 ~~~ilivdd~--~~~~~~l~~~L~~~g~--~v~--~~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~ 80 (136)
T 3hdv_A 7 RPLVLVVDDN--AVNREALILYLKSRGI--DAV--GADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERA 80 (136)
T ss_dssp CCEEEEECSC--HHHHHHHHHHHHHTTC--CEE--EESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTT
T ss_pred CCeEEEECCC--HHHHHHHHHHHHHcCc--eEE--EeCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCC
Confidence 4577788761 3344556666666543 233 34455555555543 577776554 35567777777653
Q ss_pred CCceEE-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 507 GAVPVV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 507 G~pvI~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
.+|+|+ +..... .+.+.. |..+++..|.+.++|..+|+++..
T Consensus 81 ~~~ii~~s~~~~~~~~~~~~~~--------g~~~~l~KP~~~~~l~~~i~~~~~ 126 (136)
T 3hdv_A 81 ALSIIVVSGDTDVEEAVDVMHL--------GVVDFLLKPVDLGKLLELVNKELK 126 (136)
T ss_dssp TCEEEEEESSCCHHHHHHHHHT--------TCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCChHHHHHHHhC--------CcceEEeCCCCHHHHHHHHHHHhc
Confidence 356666 443332 223333 678999999999999999999885
No 97
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=68.72 E-value=35 Score=28.06 Aligned_cols=109 Identities=8% Similarity=0.060 Sum_probs=66.3
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh-------CCEEEEcCCC-CCCchHHHHHHhc-
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA-------ADIVLVPSIY-EPCGLAQMIGMRY- 506 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~-------aDi~l~PS~~-E~~gl~~lEAma~- 506 (596)
.+++|+.+. ......+....++.+.. ......-+.++....+.. .|++++-... +.-|+.+++.+..
T Consensus 10 ~~iLivdd~--~~~~~~l~~~l~~~~~~--~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 85 (146)
T 3ilh_A 10 DSVLLIDDD--DIVNFLNTTIIRMTHRV--EEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQH 85 (146)
T ss_dssp EEEEEECSC--HHHHHHHHHHHHTTCCE--EEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHH
T ss_pred ceEEEEeCC--HHHHHHHHHHHHhcCCC--eeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 467777761 23344455555543321 133344555566666655 6888876543 5567777776554
Q ss_pred ------CCceEEe-CCCCcc---ccccccCCCCCCCc-cceEEEeCCCHHHHHHHHHHHHH
Q 043397 507 ------GAVPVVR-KTGGLA---DTVFDVDDPSNHEK-ANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 507 ------G~pvI~s-~~gg~~---e~i~~~~~~~~~~~-~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
.+|+|.. ...... +.... + ..+++..|.+.++|..+|.+...
T Consensus 86 ~~~~~~~~~ii~~t~~~~~~~~~~~~~~--------g~~~~~l~KP~~~~~L~~~i~~~~~ 138 (146)
T 3ilh_A 86 FQPMKNKSIVCLLSSSLDPRDQAKAEAS--------DWVDYYVSKPLTANALNNLYNKVLN 138 (146)
T ss_dssp CGGGTTTCEEEEECSSCCHHHHHHHHHC--------SSCCEEECSSCCHHHHHHHHHHHHC
T ss_pred hhhccCCCeEEEEeCCCChHHHHHHHhc--------CCcceeeeCCCCHHHHHHHHHHHHH
Confidence 5666663 333222 22222 4 68899999999999999998885
No 98
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=68.16 E-value=4.8 Score=37.45 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=26.0
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFY 152 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~ 152 (596)
.|+|+++ ||.+..-..+++.|.++||+|.++....
T Consensus 21 ~~~ilVt----------GatG~iG~~l~~~L~~~G~~V~~~~R~~ 55 (236)
T 3e8x_A 21 GMRVLVV----------GANGKVARYLLSELKNKGHEPVAMVRNE 55 (236)
T ss_dssp CCEEEEE----------TTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CCeEEEE----------CCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence 4677766 4445555578999999999999998543
No 99
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=67.86 E-value=44 Score=26.70 Aligned_cols=109 Identities=11% Similarity=0.067 Sum_probs=64.1
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHhc-----
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMRY----- 506 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma~----- 506 (596)
..+++|+.+. ......+....++.+.. .|. ..-+.++....+.. .|++++-... +.-|+.+++.+..
T Consensus 4 ~~~ilivdd~--~~~~~~l~~~l~~~~~~-~v~--~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~ 78 (128)
T 1jbe_A 4 ELKFLVVDDF--STMRRIVRNLLKELGFN-NVE--EAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMS 78 (128)
T ss_dssp TCCEEEECSC--HHHHHHHHHHHHHTTCC-CEE--EESSHHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCT
T ss_pred ccEEEEECCC--HHHHHHHHHHHHHcCCc-EEE--eeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccC
Confidence 3566777761 23344555555554421 222 23334445555543 5888765443 3457777777754
Q ss_pred CCceEE-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 507 GAVPVV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 507 G~pvI~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
.+|+|. +..... .+.+.. |..+++..|.+.++|..+|.+++.
T Consensus 79 ~~~ii~~s~~~~~~~~~~~~~~--------ga~~~l~KP~~~~~l~~~i~~~~~ 124 (128)
T 1jbe_A 79 ALPVLMVTAEAKKENIIAAAQA--------GASGYVVKPFTAATLEEKLNKIFE 124 (128)
T ss_dssp TCCEEEEESSCCHHHHHHHHHT--------TCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCcEEEEecCccHHHHHHHHHh--------CcCceeecCCCHHHHHHHHHHHHH
Confidence 456665 443332 223333 678999999999999999998875
No 100
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=67.21 E-value=53 Score=30.37 Aligned_cols=112 Identities=9% Similarity=0.084 Sum_probs=62.6
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHhc---CC
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMRY---GA 508 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma~---G~ 508 (596)
..+++|+.+. ......+....+..+. .....-+.++....+. ..|++++-... +.-|+.+++.+.. .+
T Consensus 23 ~~~ILivdd~--~~~~~~l~~~L~~~g~----~v~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~ 96 (250)
T 3r0j_A 23 EARVLVVDDE--ANIVELLSVSLKFQGF----EVYTATNGAQALDRARETRPDAVILDVXMPGMDGFGVLRRLRADGIDA 96 (250)
T ss_dssp SCEEEEECSC--HHHHHHHHHHHHHTTC----EEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTTCCC
T ss_pred CceEEEEECC--HHHHHHHHHHHHHCCC----EEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCC
Confidence 3466666651 2233344444444332 2223344444444443 35777765432 4456666666543 46
Q ss_pred ceEE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 509 VPVV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 509 pvI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
|+|. |......+.+.-.. .|..+|+..|.+.++|..+|..++..
T Consensus 97 ~ii~lt~~~~~~~~~~~~~-----~Ga~~yl~Kp~~~~~L~~~i~~~~~~ 141 (250)
T 3r0j_A 97 PALFLTARDSLQDKIAGLT-----LGGDDYVTKPFSLEEVVARLRVILRR 141 (250)
T ss_dssp CEEEEECSTTHHHHHHHHT-----STTCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHH-----cCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 7776 44443333222111 16899999999999999999999863
No 101
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=67.12 E-value=16 Score=30.47 Aligned_cols=66 Identities=18% Similarity=0.190 Sum_probs=40.0
Q ss_pred hCCEEEEcCCC-CCCchHHHHHHh---cCCceEE-eCCCCcc---ccccccCCCCCCCccceEEEeCCCHHHHHHHHHHH
Q 043397 483 AADIVLVPSIY-EPCGLAQMIGMR---YGAVPVV-RKTGGLA---DTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRA 554 (596)
Q Consensus 483 ~aDi~l~PS~~-E~~gl~~lEAma---~G~pvI~-s~~gg~~---e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~l 554 (596)
..|++++-... +.-|+.+++.+. ..+|+|+ +...... +.+.. |..+|+..|.+.++|..+|.++
T Consensus 67 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~--------ga~~~l~Kp~~~~~L~~~i~~~ 138 (146)
T 4dad_A 67 AFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRA--------GVRDVLRWPLEPRALDDALKRA 138 (146)
T ss_dssp TCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTT--------TEEEEEESSCCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHh--------CCceeEcCCCCHHHHHHHHHHH
Confidence 35666654332 223444444443 2556665 3333322 22333 6789999999999999999999
Q ss_pred HH
Q 043397 555 FR 556 (596)
Q Consensus 555 l~ 556 (596)
+.
T Consensus 139 ~~ 140 (146)
T 4dad_A 139 AA 140 (146)
T ss_dssp HH
T ss_pred Hh
Confidence 86
No 102
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=66.93 E-value=54 Score=29.11 Aligned_cols=107 Identities=10% Similarity=0.089 Sum_probs=63.9
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHh---cCCc
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMR---YGAV 509 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma---~G~p 509 (596)
.+++|+.+. ......+....+..| ......-+.++....+.. .|++++-... +.-|+.+++.+. .++|
T Consensus 5 ~~ilivdd~--~~~~~~l~~~L~~~g----~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ 78 (208)
T 1yio_A 5 PTVFVVDDD--MSVREGLRNLLRSAG----FEVETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIP 78 (208)
T ss_dssp CEEEEECSC--HHHHHHHHHHHHTTT----CEEEEESSHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCC
T ss_pred CEEEEEcCC--HHHHHHHHHHHHhCC----ceEEEcCCHHHHHHhhhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCC
Confidence 466777661 233444555554433 223334455555555433 4777765433 445777776664 3677
Q ss_pred eEE-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 510 PVV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 510 vI~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
+|. +..... .+.+.. |..+|+..|.+.++|..+|..++.
T Consensus 79 ii~ls~~~~~~~~~~a~~~--------Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (208)
T 1yio_A 79 IVFITAHGDIPMTVRAMKA--------GAIEFLPKPFEEQALLDAIEQGLQ 121 (208)
T ss_dssp EEEEESCTTSCCCHHHHHT--------TEEEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHC--------CCcEEEeCCCCHHHHHHHHHHHHh
Confidence 776 444332 223333 678999999999999999998886
No 103
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=66.82 E-value=46 Score=26.40 Aligned_cols=107 Identities=9% Similarity=0.080 Sum_probs=62.1
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHh--cCCce
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMR--YGAVP 510 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma--~G~pv 510 (596)
.+++|+.+. ......+....++.|. .|. ...+.++....+.. .|++++-... +.-|+.+++.+. ..+|+
T Consensus 3 ~~ilivdd~--~~~~~~l~~~L~~~g~--~v~--~~~~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~i 76 (120)
T 3f6p_A 3 KKILVVDDE--KPIADILEFNLRKEGY--EVH--CAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPI 76 (120)
T ss_dssp CEEEEECSC--HHHHHHHHHHHHHTTC--EEE--EESSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCE
T ss_pred CeEEEEECC--HHHHHHHHHHHHhCCE--EEE--EeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCE
Confidence 356666651 2334445555555432 232 34455555555543 5777765433 344566665553 35677
Q ss_pred EE-eCCCCcc---ccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 511 VV-RKTGGLA---DTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 511 I~-s~~gg~~---e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
|. +...... +.+.. |..+|+..|.+.++|..+|.+++.
T Consensus 77 i~~t~~~~~~~~~~~~~~--------ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 77 IMLTAKDSEIDKVIGLEI--------GADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp EEEEESSCHHHHHHHHHT--------TCCEEEEESCCHHHHHHHHHHHHT
T ss_pred EEEECCCChHHHHHHHhC--------CcceeEcCCCCHHHHHHHHHHHHh
Confidence 76 3333322 22333 678999999999999999988764
No 104
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=66.82 E-value=34 Score=28.67 Aligned_cols=108 Identities=16% Similarity=0.106 Sum_probs=64.1
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHh---cCC
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMR---YGA 508 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma---~G~ 508 (596)
..+++|+.+. ......+.....+.|. .+...-+.++....+. ..|++++-... +.-|+.+++.+. ..+
T Consensus 3 ~~~ILivdd~--~~~~~~l~~~L~~~g~----~v~~~~~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~ 76 (155)
T 1qkk_A 3 APSVFLIDDD--RDLRKAMQQTLELAGF----TVSSFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDL 76 (155)
T ss_dssp -CEEEEECSC--HHHHHHHHHHHHHTTC----EEEEESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTS
T ss_pred CCEEEEEeCC--HHHHHHHHHHHHHcCc----EEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCC
Confidence 3466777661 3344555555555443 2333444444555443 35887775543 345666666553 367
Q ss_pred ceEE-eCCCC---ccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 509 VPVV-RKTGG---LADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 509 pvI~-s~~gg---~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
|+|+ +.... ..+.+.. |..+++..|.+.++|...|.+++.
T Consensus 77 pii~ls~~~~~~~~~~~~~~--------g~~~~l~kP~~~~~L~~~i~~~~~ 120 (155)
T 1qkk_A 77 PMILVTGHGDIPMAVQAIQD--------GAYDFIAKPFAADRLVQSARRAEE 120 (155)
T ss_dssp CEEEEECGGGHHHHHHHHHT--------TCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHhc--------CCCeEEeCCCCHHHHHHHHHHHHH
Confidence 7776 33333 2222333 678999999999999999999987
No 105
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=66.54 E-value=26 Score=29.41 Aligned_cols=110 Identities=11% Similarity=0.164 Sum_probs=63.4
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh---CCEEEEcCCC-CCCchHHHHHHh---cCC
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA---ADIVLVPSIY-EPCGLAQMIGMR---YGA 508 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~---aDi~l~PS~~-E~~gl~~lEAma---~G~ 508 (596)
.+++|+.+. ......++...++.. +...+...-+.++....+.. .|++++-... +.-|+.+++.+. ..+
T Consensus 4 ~~iLivdd~--~~~~~~l~~~L~~~~--g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ 79 (154)
T 2qsj_A 4 TVVLIVDDH--HLIRAGAKNLLEGAF--SGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSN 79 (154)
T ss_dssp EEEEEECSC--HHHHHHHHHHHHHHC--TTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTS
T ss_pred cEEEEEcCC--HHHHHHHHHHHHhCC--CceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCC
Confidence 467777761 334455566555541 12233344555566666655 6888876543 334666666654 367
Q ss_pred ceEE-eCCCC---ccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 509 VPVV-RKTGG---LADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 509 pvI~-s~~gg---~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
|+|+ +.... ..+.+.. |..+++..|.+.++|..+|.+++..
T Consensus 80 ~ii~ls~~~~~~~~~~~~~~--------g~~~~l~kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 80 AVALISGETDHELIRAALEA--------GADGFIPKSADPQVLIHAVSLILEG 124 (154)
T ss_dssp EEEEC-----CHHHHHHHHT--------TCCBBCCTTSCHHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCHHHHHHHHHc--------cCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 7776 33322 2222333 6789999999999999999999863
No 106
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=66.33 E-value=38 Score=28.32 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=47.0
Q ss_pred cCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHh---cCCceEE-eCCCCcc---ccccccCCCCCCCc-cceEEEe
Q 043397 472 YSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMR---YGAVPVV-RKTGGLA---DTVFDVDDPSNHEK-ANGFVFE 540 (596)
Q Consensus 472 ~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma---~G~pvI~-s~~gg~~---e~i~~~~~~~~~~~-~~G~lv~ 540 (596)
-+.++....+.. .|++++-... +.-|+.+++.+. ..+|+|+ +...... +.+.. | ..+|+..
T Consensus 45 ~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~--------g~~~~~l~K 116 (153)
T 3hv2_A 45 RDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDPDLKLIAKAINE--------GEIYRYLSK 116 (153)
T ss_dssp SSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECCCCCHHHHHHHHHT--------TCCSEEECS
T ss_pred CCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEECCCCHHHHHHHHhC--------CCcceEEeC
Confidence 344444444433 4777665443 445666665554 3567766 3333222 22333 4 6889999
Q ss_pred CCCHHHHHHHHHHHHH
Q 043397 541 GIDEGSLNWALDRAFR 556 (596)
Q Consensus 541 ~~d~~~la~~i~~ll~ 556 (596)
|.+.++|..+|.+++.
T Consensus 117 P~~~~~l~~~i~~~l~ 132 (153)
T 3hv2_A 117 PWDDQELLLALRQALE 132 (153)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999999987
No 107
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=66.11 E-value=5.5 Score=36.33 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=25.5
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
|||+++ ||.+..-..++++|.++||+|.++...
T Consensus 1 MkvlVt----------GatG~iG~~l~~~L~~~g~~V~~~~R~ 33 (221)
T 3ew7_A 1 MKIGII----------GATGRAGSRILEEAKNRGHEVTAIVRN 33 (221)
T ss_dssp CEEEEE----------TTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CeEEEE----------cCCchhHHHHHHHHHhCCCEEEEEEcC
Confidence 787766 444555568899999999999999854
No 108
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=65.93 E-value=37 Score=27.63 Aligned_cols=108 Identities=12% Similarity=0.112 Sum_probs=64.9
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHhc---CC
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMRY---GA 508 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma~---G~ 508 (596)
..+++|+.+. ......++...++.+. .|.. .-+.++....++ ..|++++-... +.-|+.+++.+.. .+
T Consensus 7 ~~~ilivdd~--~~~~~~l~~~L~~~~~--~v~~--~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ 80 (137)
T 3hdg_A 7 ALKILIVEDD--TDAREWLSTIISNHFP--EVWS--AGDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKP 80 (137)
T ss_dssp CCCEEEECSC--HHHHHHHHHHHHTTCS--CEEE--ESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCC
T ss_pred ccEEEEEeCC--HHHHHHHHHHHHhcCc--EEEE--ECCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCC
Confidence 4677777761 3344455555554221 2333 334444555443 46888876543 4556667666543 56
Q ss_pred ceEE-eCCCC---ccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 509 VPVV-RKTGG---LADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 509 pvI~-s~~gg---~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
|+|+ +.... ..+.+.. |..+++..|.+.++|..+|.++++
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~--------g~~~~l~kP~~~~~l~~~i~~~~~ 124 (137)
T 3hdg_A 81 YVIVISAFSEMKYFIKAIEL--------GVHLFLPKPIEPGRLMETLEDFRH 124 (137)
T ss_dssp EEEECCCCCCHHHHHHHHHH--------CCSEECCSSCCHHHHHHHHHHHHH
T ss_pred cEEEEecCcChHHHHHHHhC--------CcceeEcCCCCHHHHHHHHHHHHH
Confidence 6666 33332 2223333 678999999999999999999986
No 109
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=65.61 E-value=42 Score=30.79 Aligned_cols=96 Identities=15% Similarity=0.151 Sum_probs=53.1
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhc--CCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEee
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSR--GHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHG 185 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~--Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (596)
+|||.++. .|.+.....+.+++.+. +++|.++.+..+..+-.+ ..
T Consensus 3 m~ki~vl~---------sG~g~~~~~~l~~l~~~~l~~~I~~Vit~~~~~~v~~------------------------~A 49 (212)
T 3av3_A 3 MKRLAVFA---------SGSGTNFQAIVDAAKRGDLPARVALLVCDRPGAKVIE------------------------RA 49 (212)
T ss_dssp CEEEEEEC---------CSSCHHHHHHHHHHHTTCCCEEEEEEEESSTTCHHHH------------------------HH
T ss_pred CcEEEEEE---------ECCcHHHHHHHHHHHhCCCCCeEEEEEeCCCCcHHHH------------------------HH
Confidence 57888873 23356777888888876 678865554321111100 11
Q ss_pred eeCCeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHH
Q 043397 186 VVSSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLY 253 (596)
Q Consensus 186 ~~~gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~ 253 (596)
...|++++.+++. .+.. -..|...+.+.++. .+||+|.+-.|..-+-+.++
T Consensus 50 ~~~gIp~~~~~~~-~~~~--------------~~~~~~~~~~~l~~--~~~Dliv~a~y~~il~~~~l 100 (212)
T 3av3_A 50 ARENVPAFVFSPK-DYPS--------------KAAFESEILRELKG--RQIDWIALAGYMRLIGPTLL 100 (212)
T ss_dssp HHTTCCEEECCGG-GSSS--------------HHHHHHHHHHHHHH--TTCCEEEESSCCSCCCHHHH
T ss_pred HHcCCCEEEeCcc-cccc--------------hhhhHHHHHHHHHh--cCCCEEEEchhhhhCCHHHH
Confidence 2368888876631 1110 11233444555554 69999998866544444443
No 110
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=65.42 E-value=5.8 Score=36.37 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=25.6
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
|||+++ ||.+..-..++++|.++||+|.++...
T Consensus 1 MkilVt----------GatG~iG~~l~~~L~~~g~~V~~~~R~ 33 (224)
T 3h2s_A 1 MKIAVL----------GATGRAGSAIVAEARRRGHEVLAVVRD 33 (224)
T ss_dssp CEEEEE----------TTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEE----------cCCCHHHHHHHHHHHHCCCEEEEEEec
Confidence 787765 555555568899999999999999744
No 111
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=64.72 E-value=50 Score=27.53 Aligned_cols=108 Identities=11% Similarity=0.100 Sum_probs=63.6
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHh---cCC
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMR---YGA 508 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma---~G~ 508 (596)
+.+++|+.+. ......+....++.| +.+...-+.++....+.. .|++++-... +.-|+.+++.+. ..+
T Consensus 7 ~~~iLivdd~--~~~~~~l~~~L~~~g----~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ 80 (154)
T 2rjn_A 7 NYTVMLVDDE--QPILNSLKRLIKRLG----CNIITFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDI 80 (154)
T ss_dssp CCEEEEECSC--HHHHHHHHHHHHTTT----CEEEEESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTS
T ss_pred CCeEEEEcCC--HHHHHHHHHHHHHcC----CeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCC
Confidence 4567777761 233444555554433 233344455555566543 5787775543 345666666553 366
Q ss_pred ceEE-eCCCCcc---ccccccCCCCCCCc-cceEEEeCCCHHHHHHHHHHHHH
Q 043397 509 VPVV-RKTGGLA---DTVFDVDDPSNHEK-ANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 509 pvI~-s~~gg~~---e~i~~~~~~~~~~~-~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
|+|+ +...... +.+.. + ..+++..|.+.++|..+|.+++.
T Consensus 81 ~ii~ls~~~~~~~~~~~~~~--------g~~~~~l~kP~~~~~L~~~i~~~~~ 125 (154)
T 2rjn_A 81 ERVVISGYADAQATIDAVNR--------GKISRFLLKPWEDEDVFKVVEKGLQ 125 (154)
T ss_dssp EEEEEECGGGHHHHHHHHHT--------TCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cEEEEecCCCHHHHHHHHhc--------cchheeeeCCCCHHHHHHHHHHHHH
Confidence 7766 3333322 22222 3 68999999999999999999986
No 112
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=64.47 E-value=57 Score=26.59 Aligned_cols=106 Identities=6% Similarity=0.128 Sum_probs=59.9
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHh-----cC
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMR-----YG 507 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma-----~G 507 (596)
.+++|+.+. ......+....++. ......-+.++....+. ..|++++-... +.-|+.+++.+. ..
T Consensus 4 ~~iLivdd~--~~~~~~l~~~l~~~-----~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ 76 (140)
T 3n53_A 4 KKILIIDQQ--DFSRIELKNFLDSE-----YLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKN 76 (140)
T ss_dssp CEEEEECSC--HHHHHHHHHHHTTT-----SEEEEESSHHHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTT
T ss_pred CEEEEEeCC--HHHHHHHHHHHHhc-----ceEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCC
Confidence 466777761 23334444444332 23333445555555553 45888876543 444666666654 46
Q ss_pred CceEE-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 508 AVPVV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 508 ~pvI~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
+|+|+ +..... .+.+.. |..+++..|.+.++|..+|.+++.
T Consensus 77 ~~ii~~s~~~~~~~~~~~~~~--------g~~~~l~KP~~~~~l~~~i~~~~~ 121 (140)
T 3n53_A 77 VPLILLFSSEHKEAIVNGLHS--------GADDYLTKPFNRNDLLSRIEIHLR 121 (140)
T ss_dssp CCEEEEECC----CTTTTTTC--------CCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHhc--------CCCeeeeCCCCHHHHHHHHHHHHh
Confidence 77776 433322 222333 678999999999999999999986
No 113
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=64.29 E-value=38 Score=27.70 Aligned_cols=108 Identities=10% Similarity=0.089 Sum_probs=63.6
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHhc--CCc
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMRY--GAV 509 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma~--G~p 509 (596)
..+++|+.+. ......+....+..+. .| ...-+.++....+.. .|++++-... ..-|+.+++.+.. .+|
T Consensus 4 ~~~Ilivdd~--~~~~~~l~~~L~~~g~--~v--~~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ 77 (136)
T 2qzj_A 4 QTKILIIDGD--KDNCQKLKGFLEEKGI--SI--DLAYNCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCP 77 (136)
T ss_dssp CCEEEEECSC--HHHHHHHHHHHHTTTC--EE--EEESSHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCC
T ss_pred CCeEEEEcCC--HHHHHHHHHHHHHCCC--EE--EEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCC
Confidence 4567777761 2233445555544332 23 334444555555543 5887765433 3346666666643 567
Q ss_pred eEE-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 510 PVV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 510 vI~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
+|. +..... .+.+.. |..+++..|.+.++|..+|.+++.
T Consensus 78 ii~ls~~~~~~~~~~~~~~--------ga~~~l~KP~~~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 78 IVYMTYINEDQSILNALNS--------GGDDYLIKPLNLEILYAKVKAILR 120 (136)
T ss_dssp EEEEESCCCHHHHHHHHHT--------TCCEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHc--------CCcEEEECCCCHHHHHHHHHHHHH
Confidence 766 443332 223333 678999999999999999998886
No 114
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=63.94 E-value=11 Score=32.15 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=31.3
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeE-EEEe
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTV-DIML 149 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V-~vi~ 149 (596)
..||++++...- |+ ..-....+..+|.++.+.||+| .|+.
T Consensus 11 ~~~~~~ivv~~~-Py--g~~~a~~Al~~A~aala~g~eV~~VFf 51 (140)
T 2d1p_A 11 GSMRFAIVVTGP-AY--GTQQASSAFQFAQALIADGHELSSVFF 51 (140)
T ss_dssp CCCEEEEEECSC-SS--SSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CceEEEEEEcCC-CC--CcHHHHHHHHHHHHHHHCCCccCEEEE
Confidence 469999987654 53 3455777889999999999999 8876
No 115
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=63.51 E-value=47 Score=26.96 Aligned_cols=107 Identities=17% Similarity=0.180 Sum_probs=63.6
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC------CCCchHHHHHHh--
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY------EPCGLAQMIGMR-- 505 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~------E~~gl~~lEAma-- 505 (596)
.+++|+.+. ......+....++.+ ..+...-+.++....+.. .|++++-... +.-|+.+++.+.
T Consensus 4 ~~ilivdd~--~~~~~~l~~~L~~~g----~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~ 77 (140)
T 2qr3_A 4 GTIIIVDDN--KGVLTAVQLLLKNHF----SKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQ 77 (140)
T ss_dssp CEEEEECSC--HHHHHHHHHHHTTTS----SEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHH
T ss_pred ceEEEEeCC--HHHHHHHHHHHHhCC----cEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhh
Confidence 467777761 333444555554433 233344455556666654 4777765433 345666666554
Q ss_pred -cCCceEE-eCCCC---ccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 506 -YGAVPVV-RKTGG---LADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 506 -~G~pvI~-s~~gg---~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
..+|+|+ +.... ..+.+.. |..+++..|.+.++|..+|.+++.
T Consensus 78 ~~~~~ii~ls~~~~~~~~~~~~~~--------g~~~~l~kp~~~~~l~~~l~~~~~ 125 (140)
T 2qr3_A 78 YRDLPVVLFTAYADIDLAVRGIKE--------GASDFVVKPWDNQKLLETLLNAAS 125 (140)
T ss_dssp CTTCCEEEEEEGGGHHHHHHHHHT--------TCCEEEEESCCHHHHHHHHHHHHT
T ss_pred CcCCCEEEEECCCCHHHHHHHHHc--------CchheeeCCCCHHHHHHHHHHHHH
Confidence 3677776 33332 2223333 678999999999999999999886
No 116
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=63.29 E-value=25 Score=27.40 Aligned_cols=106 Identities=10% Similarity=0.032 Sum_probs=62.8
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHh-----cC
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMR-----YG 507 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma-----~G 507 (596)
.+++|+.+. ......+....++.|. +|. ..-+.++....+. ..|++++-... +.-|+.+++.+. ..
T Consensus 2 ~~iliv~~~--~~~~~~l~~~l~~~g~--~v~--~~~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~ 75 (119)
T 2j48_A 2 GHILLLEEE--DEAATVVCEMLTAAGF--KVI--WLVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPH 75 (119)
T ss_dssp CEEEEECCC--HHHHHHHHHHHHHTTC--EEE--EESCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSS
T ss_pred CEEEEEeCC--HHHHHHHHHHHHhCCc--EEE--EecCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCC
Confidence 356667651 3344555555555443 233 3334444555444 35888776543 445677777765 45
Q ss_pred CceEE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHH
Q 043397 508 AVPVV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAF 555 (596)
Q Consensus 508 ~pvI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll 555 (596)
+|+|+ +......+.... |..+++..|.+.++|...|.+++
T Consensus 76 ~~ii~~~~~~~~~~~~~~--------g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 76 PPLVLFLGEPPVDPLLTA--------QASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp CCCEEEESSCCSSHHHHH--------HCSEECSSCSTTHHHHHHHHTTC
T ss_pred CCEEEEeCCCCchhhhhc--------CHHHhccCCCCHHHHHHHHHHHh
Confidence 67776 443332233433 67889999999999999887664
No 117
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=63.18 E-value=7 Score=35.89 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=27.0
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+|||+++ ||.+..-..+++.|.++||+|.++...
T Consensus 4 m~~ilIt----------GatG~iG~~l~~~L~~~g~~V~~~~r~ 37 (227)
T 3dhn_A 4 VKKIVLI----------GASGFVGSALLNEALNRGFEVTAVVRH 37 (227)
T ss_dssp CCEEEEE----------TCCHHHHHHHHHHHHTTTCEEEEECSC
T ss_pred CCEEEEE----------cCCchHHHHHHHHHHHCCCEEEEEEcC
Confidence 4677765 666666678999999999999999754
No 118
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=63.14 E-value=57 Score=26.17 Aligned_cols=109 Identities=9% Similarity=0.006 Sum_probs=62.7
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHhc-----C
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMRY-----G 507 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma~-----G 507 (596)
.+++|+.+. ......++...+ ....+...-+.++....+.. .|++++-... +.-|+.+++.+.. .
T Consensus 5 ~~ilivdd~--~~~~~~l~~~l~-----~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 77 (133)
T 3nhm_A 5 PKVLIVENS--WTMRETLRLLLS-----GEFDCTTAADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKH 77 (133)
T ss_dssp CEEEEECSC--HHHHHHHHHHHT-----TTSEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTT
T ss_pred CEEEEEcCC--HHHHHHHHHHHh-----CCcEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCC
Confidence 467777761 223333333332 12333344455555555543 5787775543 4567777776654 6
Q ss_pred CceEE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 508 AVPVV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 508 ~pvI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
+|+|+ +..... +...- ...|..+++..|.+.++|..+|.+++..
T Consensus 78 ~pii~~s~~~~~-~~~~~-----~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 78 IPVIFVSGYAPR-TEGPA-----DQPVPDAYLVKPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp CCEEEEESCCC------T-----TSCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcH-hHHHH-----hhcCCceEEeccCCHHHHHHHHHHHHhh
Confidence 77776 333221 11111 1226789999999999999999999973
No 119
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=63.02 E-value=40 Score=30.45 Aligned_cols=99 Identities=18% Similarity=0.219 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh-----CCEEEEcCCCCC
Q 043397 421 LHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA-----ADIVLVPSIYEP 495 (596)
Q Consensus 421 i~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~-----aDi~l~PS~~E~ 495 (596)
...+++|+.+.++.+-++-++|. +.....++.+.+-++. ++...-..+.+++...+.. +++++ |
T Consensus 80 ~~Dil~al~~a~~~~~kIavvg~---~~~~~~~~~~~~ll~~--~i~~~~~~~~~e~~~~i~~l~~~G~~vvV------G 148 (196)
T 2q5c_A 80 RFDTMRAVYNAKRFGNELALIAY---KHSIVDKHEIEAMLGV--KIKEFLFSSEDEITTLISKVKTENIKIVV------S 148 (196)
T ss_dssp HHHHHHHHHHHGGGCSEEEEEEE---SSCSSCHHHHHHHHTC--EEEEEEECSGGGHHHHHHHHHHTTCCEEE------E
T ss_pred HhHHHHHHHHHHhhCCcEEEEeC---cchhhHHHHHHHHhCC--ceEEEEeCCHHHHHHHHHHHHHCCCeEEE------C
Confidence 35788899888776668888898 5555566666666666 4777777777666655442 24444 2
Q ss_pred CchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 496 CGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 496 ~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
-+++.--|-.+| -+++++.. +.+++.+++++++..
T Consensus 149 ~~~~~~~A~~~G--------------------------l~~vli~s-g~eSI~~Ai~eA~~l 183 (196)
T 2q5c_A 149 GKTVTDEAIKQG--------------------------LYGETINS-GEESLRRAIEEALNL 183 (196)
T ss_dssp CHHHHHHHHHTT--------------------------CEEEECCC-CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcC--------------------------CcEEEEec-CHHHHHHHHHHHHHH
Confidence 233333333444 35556653 688999999888764
No 120
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=62.84 E-value=8 Score=37.28 Aligned_cols=44 Identities=18% Similarity=0.059 Sum_probs=31.4
Q ss_pred HHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccc
Q 043397 477 SHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLAD 520 (596)
Q Consensus 477 l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e 520 (596)
+.++++.+|+++--+..+..--.+..++..|+|+|+..+|--.+
T Consensus 67 l~~ll~~~DVVIDfT~p~a~~~~~~~al~~G~~vVigTTG~s~~ 110 (272)
T 4f3y_A 67 IERVCAEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFSEP 110 (272)
T ss_dssp HHHHHHHCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCHH
T ss_pred HHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHH
Confidence 56677899999976654433334567899999999977765333
No 121
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=62.65 E-value=66 Score=26.71 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=64.4
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEE-eccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHh---cC
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRIL-LMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMR---YG 507 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~-g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma---~G 507 (596)
..+++|+.+. ......+....++ ...+... ..-+.++....+.. .|++++-... +.-|+.+++.+. ..
T Consensus 5 ~~~ILivdd~--~~~~~~l~~~L~~---~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~ 79 (153)
T 3cz5_A 5 TARIMLVDDH--PIVREGYRRLIER---RPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGA 79 (153)
T ss_dssp CEEEEEECSC--HHHHHHHHHHHTT---STTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTT
T ss_pred ccEEEEECCc--HHHHHHHHHHHhh---CCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCC
Confidence 3567777761 2233344444432 1234444 34455555566554 5888775543 345666666554 35
Q ss_pred CceEE-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 508 AVPVV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 508 ~pvI~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
+|+|+ +..... .+.+.. |..+++..|.+.++|..+|.+++.
T Consensus 80 ~~ii~ls~~~~~~~~~~~~~~--------g~~~~l~kp~~~~~L~~~i~~~~~ 124 (153)
T 3cz5_A 80 ARILIFTMHQGSAFALKAFEA--------GASGYVTKSSDPAELVQAIEAILA 124 (153)
T ss_dssp CCEEEEESCCSHHHHHHHHHT--------TCSEEEETTSCTTHHHHHHHHHTT
T ss_pred CeEEEEECCCCHHHHHHHHHC--------CCcEEEecCCCHHHHHHHHHHHHh
Confidence 67776 443332 222333 678999999999999999999886
No 122
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=62.23 E-value=25 Score=28.93 Aligned_cols=108 Identities=7% Similarity=0.165 Sum_probs=65.3
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHH-cCCCCcEEEEeccCHHHHHHHHHh---CCEEEEcCCCC--CCchHHHHHHhc--
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANL-HNKGTSTRILLMYSEELSHMLYAA---ADIVLVPSIYE--PCGLAQMIGMRY-- 506 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~-~~~~~~V~~~g~~~~~~l~~~~a~---aDi~l~PS~~E--~~gl~~lEAma~-- 506 (596)
..+++|+.+. ......++...++ .+ +.+...-+.++....+.. .|++++-.... .-|+.+++.+..
T Consensus 4 ~~~ilivdd~--~~~~~~l~~~L~~~~~----~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~ 77 (140)
T 3lua_A 4 DGTVLLIDYF--EYEREKTKIIFDNIGE----YDFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNS 77 (140)
T ss_dssp CCEEEEECSC--HHHHHHHHHHHHHHCC----CEEEEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSG
T ss_pred CCeEEEEeCC--HHHHHHHHHHHHhccC----ccEEEECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCc
Confidence 3466777651 2334455555554 33 233344455556566554 57877765433 345666665544
Q ss_pred ---CCceEE-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 507 ---GAVPVV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 507 ---G~pvI~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
.+|+|. +..... .+.+.. |..+++..|.+.++|..+|.+++.
T Consensus 78 ~~~~~~ii~ls~~~~~~~~~~~~~~--------g~~~~l~KP~~~~~l~~~i~~~~~ 126 (140)
T 3lua_A 78 RTANTPVIIATKSDNPGYRHAALKF--------KVSDYILKPYPTKRLENSVRSVLK 126 (140)
T ss_dssp GGTTCCEEEEESCCCHHHHHHHHHS--------CCSEEEESSCCTTHHHHHHHHHHC
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHc--------CCCEEEECCCCHHHHHHHHHHHHH
Confidence 677776 443332 223333 678999999999999999999986
No 123
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=61.74 E-value=8.3 Score=32.14 Aligned_cols=33 Identities=30% Similarity=0.251 Sum_probs=25.2
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
.|||+++ |+ +..-..+++.|.+.||+|.++...
T Consensus 4 ~m~i~Ii----------G~-G~iG~~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 4 GMYIIIA----------GI-GRVGYTLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp -CEEEEE----------CC-SHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEE----------CC-CHHHHHHHHHHHhCCCeEEEEECC
Confidence 4899887 32 556667899999999999998743
No 124
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=61.48 E-value=12 Score=31.32 Aligned_cols=38 Identities=24% Similarity=0.374 Sum_probs=29.1
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeE-EEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTV-DIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V-~vi~ 149 (596)
||++++...- |+ ..-....+..++.++.+.||+| .|+.
T Consensus 1 mk~~iiv~~~-p~--~~~~~~~al~~a~a~~~~g~~v~~vff 39 (130)
T 2hy5_A 1 MKFALQINEG-PY--QHQASDSAYQFAKAALEKGHEIFRVFF 39 (130)
T ss_dssp CEEEEEECSC-TT--TSTHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEEEeCC-CC--CcHHHHHHHHHHHHHHhcCCeeCEEEE
Confidence 7888887553 53 2345677889999999999999 8886
No 125
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=61.26 E-value=66 Score=26.99 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=22.6
Q ss_pred CCCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEE
Q 043397 105 DSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVD 146 (596)
Q Consensus 105 ~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~ 146 (596)
...+|||+++... ......+...|.+.|++|.
T Consensus 33 ~~~~~~Ilivdd~----------~~~~~~l~~~L~~~g~~v~ 64 (157)
T 3hzh_A 33 TGIPFNVLIVDDS----------VFTVKQLTQIFTSEGFNII 64 (157)
T ss_dssp TTEECEEEEECSC----------HHHHHHHHHHHHHTTCEEE
T ss_pred CCCceEEEEEeCC----------HHHHHHHHHHHHhCCCeEE
Confidence 3445789998532 4556677888888899885
No 126
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=60.07 E-value=66 Score=25.90 Aligned_cols=107 Identities=6% Similarity=0.106 Sum_probs=62.7
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHh---cCCc
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMR---YGAV 509 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma---~G~p 509 (596)
.+++|+.+. ......++...+..+. .|. ..-+.++....+.. .|++++-... ..-|+.+++.+. .++|
T Consensus 4 ~~Ilivdd~--~~~~~~l~~~L~~~g~--~v~--~~~~~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ 77 (132)
T 3crn_A 4 KRILIVDDD--TAILDSTKQILEFEGY--EVE--IAATAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMK 77 (132)
T ss_dssp CEEEEECSC--HHHHHHHHHHHHHTTC--EEE--EESSHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSE
T ss_pred cEEEEEeCC--HHHHHHHHHHHHHCCc--eEE--EeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCc
Confidence 456677661 2334445555554332 233 34444445555543 5888765433 335666666553 3567
Q ss_pred eEE-eCCCCcc---ccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 510 PVV-RKTGGLA---DTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 510 vI~-s~~gg~~---e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
+|. +...... +.+.. |..+++..|.+.++|..+|.+++.
T Consensus 78 ii~~s~~~~~~~~~~~~~~--------ga~~~l~KP~~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 78 KIMVTGYASLENSVFSLNA--------GADAYIMKPVNPRDLLEKIKEKLD 120 (132)
T ss_dssp EEEEESCCCHHHHHHHHHT--------TCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEeccccHHHHHHHHhc--------cchhhccCCCCHHHHHHHHHHHHh
Confidence 765 4443322 22333 678999999999999999998876
No 127
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=60.07 E-value=69 Score=26.09 Aligned_cols=106 Identities=8% Similarity=0.142 Sum_probs=61.9
Q ss_pred EEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHh---cCCce
Q 043397 437 QMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMR---YGAVP 510 (596)
Q Consensus 437 ~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma---~G~pv 510 (596)
+++|+.+. ......+....+..+ ..+...-+.++....+. ..|++++-... +.-|+.+++.+. ..+|+
T Consensus 6 ~ILivdd~--~~~~~~l~~~L~~~g----~~v~~~~~~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~i 79 (137)
T 3cfy_A 6 RVLLVEDS--TSLAILYKQYVKDEP----YDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSV 79 (137)
T ss_dssp EEEEECSC--TTHHHHHHHHTTTSS----SEEEEESSHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEE
T ss_pred eEEEEeCC--HHHHHHHHHHHHhcC----ceEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCE
Confidence 56777761 233344444443322 22333444445555543 36888876543 345666666654 35666
Q ss_pred EE-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 511 VV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 511 I~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
|. +..... .+.+.. |..+++..|.+.++|...|.+++.
T Consensus 80 i~ls~~~~~~~~~~~~~~--------ga~~~l~KP~~~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 80 IIATAHGSVDLAVNLIQK--------GAEDFLEKPINADRLKTSVALHLK 121 (137)
T ss_dssp EEEESSCCHHHHHHHHHT--------TCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEecCcHHHHHHHHHC--------CccEEEeCCCCHHHHHHHHHHHHH
Confidence 65 443332 222333 678999999999999999998876
No 128
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=60.05 E-value=9.8 Score=36.79 Aligned_cols=39 Identities=26% Similarity=0.288 Sum_probs=27.5
Q ss_pred CceeEEEEeecccccccccCH-HHHHhHHHHHHHhcCCeEEEEe
Q 043397 107 NLMHIIHITAEMAPIAKVGGL-GDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~-~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
++||||+|... |. .++. ...+...+++|.+.||+|+++-
T Consensus 21 ~~MKiLII~aH--P~--~~S~n~aL~~~~~~~l~~~G~eV~v~D 60 (280)
T 4gi5_A 21 QSMKVLLIYAH--PE--PRSLNGALKNFAIRHLQQAGHEVQVSD 60 (280)
T ss_dssp -CCEEEEEECC--SC--TTSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hCCeEEEEEeC--CC--CccHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45999999764 42 2443 3445567788889999999984
No 129
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=59.61 E-value=66 Score=25.71 Aligned_cols=108 Identities=13% Similarity=0.129 Sum_probs=62.4
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHhc---CC
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMRY---GA 508 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma~---G~ 508 (596)
+.+++|+.+. ......+....++.|. .+. ..-+.++....+.. .|++++-... +.-|+.+++.+.. .+
T Consensus 7 ~~~ilivdd~--~~~~~~l~~~L~~~g~--~v~--~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ 80 (130)
T 3eod_A 7 GKQILIVEDE--QVFRSLLDSWFSSLGA--TTV--LAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQT 80 (130)
T ss_dssp TCEEEEECSC--HHHHHHHHHHHHHTTC--EEE--EESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCC
T ss_pred CCeEEEEeCC--HHHHHHHHHHHHhCCc--eEE--EeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCC
Confidence 4567777761 3344555666665543 233 34455556666643 5777775543 4456777666543 46
Q ss_pred ceEE-eCCCCc---cccccccCCCCCCCccceEEEeCC-CHHHHHHHHHHHHH
Q 043397 509 VPVV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGI-DEGSLNWALDRAFR 556 (596)
Q Consensus 509 pvI~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~-d~~~la~~i~~ll~ 556 (596)
|+|+ +..... .+.+.. |..+++..|. +.+.|.+.|.+++.
T Consensus 81 ~ii~~t~~~~~~~~~~~~~~--------g~~~~l~KP~~~~~~l~~~i~~~l~ 125 (130)
T 3eod_A 81 PVLVISATENMADIAKALRL--------GVEDVLLKPVKDLNRLREMVFACLY 125 (130)
T ss_dssp CEEEEECCCCHHHHHHHHHH--------CCSEEEESCC---CHHHHHHHHHHC
T ss_pred CEEEEEcCCCHHHHHHHHHc--------CCCEEEeCCCCcHHHHHHHHHHHhc
Confidence 7766 443332 233333 6789999998 89999999999885
No 130
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=59.29 E-value=7 Score=35.78 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=25.6
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
|||+++ ||.+..-..++++|.++||+|.++...
T Consensus 1 M~ilIt----------GatG~iG~~l~~~L~~~g~~V~~~~R~ 33 (219)
T 3dqp_A 1 MKIFIV----------GSTGRVGKSLLKSLSTTDYQIYAGARK 33 (219)
T ss_dssp CEEEEE----------STTSHHHHHHHHHHTTSSCEEEEEESS
T ss_pred CeEEEE----------CCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 787766 555555568899999999999999744
No 131
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=59.25 E-value=45 Score=27.28 Aligned_cols=108 Identities=10% Similarity=0.070 Sum_probs=60.2
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCCCCCchHHHHHHh---cCCc
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIYEPCGLAQMIGMR---YGAV 509 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~E~~gl~~lEAma---~G~p 509 (596)
..+++|+.+. ......++...++.|. .+...-+.++....+.. .|++++-...+.-|+.+++.+. ..+|
T Consensus 4 ~~~iLivdd~--~~~~~~l~~~L~~~g~----~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~~~~p 77 (142)
T 2qxy_A 4 TPTVMVVDES--RITFLAVKNALEKDGF----NVIWAKNEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEFPDTK 77 (142)
T ss_dssp CCEEEEECSC--HHHHHHHHHHHGGGTC----EEEEESSHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHCTTCE
T ss_pred CCeEEEEeCC--HHHHHHHHHHHHhCCC----EEEEECCHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHCCCCC
Confidence 3456666651 2334445555544332 22333444445555543 4777765411223444444443 3567
Q ss_pred eEE-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 510 PVV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 510 vI~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
+|+ +..... .+.... |..+++..|.+.++|...|.+++.
T Consensus 78 ii~ls~~~~~~~~~~~~~~--------g~~~~l~kP~~~~~l~~~i~~~~~ 120 (142)
T 2qxy_A 78 VAVLSAYVDKDLIINSVKA--------GAVDYILKPFRLDYLLERVKKIIS 120 (142)
T ss_dssp EEEEESCCCHHHHHHHHHH--------TCSCEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHC--------CcceeEeCCCCHHHHHHHHHHHHh
Confidence 766 443332 222333 578999999999999999999987
No 132
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=58.87 E-value=64 Score=25.91 Aligned_cols=107 Identities=15% Similarity=0.128 Sum_probs=61.3
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEE-eccCHHHHHHHH--HhCCEEEEcCCC-CCCchHHHHHHhc---CC
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRIL-LMYSEELSHMLY--AAADIVLVPSIY-EPCGLAQMIGMRY---GA 508 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~-g~~~~~~l~~~~--a~aDi~l~PS~~-E~~gl~~lEAma~---G~ 508 (596)
++++|+.+. ......++...++.+ .... -.-+.++....+ ...|++++-... +.-|+.+++.+.. .+
T Consensus 2 ~~ilivdd~--~~~~~~l~~~L~~~g----~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~ 75 (134)
T 3f6c_A 2 LNAIIIDDH--PLAIAAIRNLLIKND----IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSG 75 (134)
T ss_dssp EEEEEECCC--HHHHHHHHHHHHHTT----EEEEEEESSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCS
T ss_pred eEEEEEcCC--HHHHHHHHHHHhhCC----cEEEEEcCCHHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCC
Confidence 356666651 334455666655543 2222 122222233333 346888776543 4556666666543 45
Q ss_pred ceEE-eCCCC---ccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 509 VPVV-RKTGG---LADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 509 pvI~-s~~gg---~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
|+|. +.... ..+.... |..+++..|.+.++|.++|.+++.
T Consensus 76 ~ii~~s~~~~~~~~~~~~~~--------g~~~~l~kp~~~~~l~~~i~~~~~ 119 (134)
T 3f6c_A 76 IIIIVSAKNDHFYGKHCADA--------GANGFVSKKEGMNNIIAAIEAAKN 119 (134)
T ss_dssp EEEEEECC---CTHHHHHHT--------TCSEEEEGGGCTHHHHHHHHHHHT
T ss_pred eEEEEeCCCChHHHHHHHHh--------CCCEEEeCCCCHHHHHHHHHHHHC
Confidence 6665 33332 2223333 678999999999999999999886
No 133
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=58.40 E-value=77 Score=26.08 Aligned_cols=108 Identities=15% Similarity=0.017 Sum_probs=63.4
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHh------
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMR------ 505 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma------ 505 (596)
..+++|+.+. ......+....++.|. .+. ..-+.++....+.. .|++++-... +.-|+.+++.+.
T Consensus 14 ~~~iLivdd~--~~~~~~l~~~L~~~g~--~v~--~~~~~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~ 87 (143)
T 3m6m_D 14 SMRMLVADDH--EANRMVLQRLLEKAGH--KVL--CVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASG 87 (143)
T ss_dssp -CEEEEECSS--HHHHHHHHHHHHC--C--EEE--EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTT
T ss_pred cceEEEEeCC--HHHHHHHHHHHHHcCC--eEE--EeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhcc
Confidence 4677888761 2334455555554432 233 33455555555543 5888775443 455777777664
Q ss_pred -cCCceEE-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 506 -YGAVPVV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 506 -~G~pvI~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
..+|+|+ +..... .+.... |..+|+..|.+.++|.++|.++..
T Consensus 88 ~~~~pii~~s~~~~~~~~~~~~~~--------Ga~~~l~KP~~~~~L~~~l~~~~~ 135 (143)
T 3m6m_D 88 MRYTPVVVLSADVTPEAIRACEQA--------GARAFLAKPVVAAKLLDTLADLAV 135 (143)
T ss_dssp CCCCCEEEEESCCCHHHHHHHHHT--------TCSEEEESSCCHHHHHHHHHHHC-
T ss_pred CCCCeEEEEeCCCCHHHHHHHHHc--------ChhheeeCCCCHHHHHHHHHHHHH
Confidence 1257776 333332 222333 678999999999999999988865
No 134
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=58.29 E-value=8.6 Score=36.60 Aligned_cols=42 Identities=12% Similarity=0.057 Sum_probs=29.1
Q ss_pred CCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccch
Q 043397 106 SNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECI 155 (596)
Q Consensus 106 ~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~ 155 (596)
+++||||+....- =.+.-+..|+++|.+ +|+|.|++|..++.
T Consensus 9 ~~~m~ILlTNDDG-------i~apGi~aL~~~l~~-~~~V~VVAP~~~~S 50 (261)
T 3ty2_A 9 TPKLRLLLSNDDG-------VYAKGLAILAKTLAD-LGEVDVVAPDRNRS 50 (261)
T ss_dssp --CCEEEEECSSC-------TTCHHHHHHHHHHTT-TSEEEEEEESSCCT
T ss_pred CCCCeEEEEcCCC-------CCCHHHHHHHHHHHh-cCCEEEEecCCCCc
Confidence 3569998875432 225566788898877 79999999875544
No 135
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=57.32 E-value=1.1e+02 Score=27.52 Aligned_cols=112 Identities=11% Similarity=0.091 Sum_probs=66.8
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHh---cCC
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMR---YGA 508 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma---~G~ 508 (596)
..+++|+.+. ......+....+..+. .| ...-+.++....+.. .|++++-... +.-|+.+++.+. ..+
T Consensus 7 ~~~ilivdd~--~~~~~~l~~~L~~~g~--~v--~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ 80 (233)
T 1ys7_A 7 SPRVLVVDDD--SDVLASLERGLRLSGF--EV--ATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDV 80 (233)
T ss_dssp CCEEEEECSC--HHHHHHHHHHHHHTTC--EE--EEESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCC
T ss_pred CCeEEEEeCC--HHHHHHHHHHHHhCCC--EE--EEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCC
Confidence 3567777761 2334455555555432 23 344455555555543 5888775543 445777776664 467
Q ss_pred ceEE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 509 VPVV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 509 pvI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
|+|. +..........-. ..|..|++..|.+.++|..+|..++..
T Consensus 81 ~ii~lt~~~~~~~~~~~~-----~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (233)
T 1ys7_A 81 PVCVLSARSSVDDRVAGL-----EAGADDYLVKPFVLAELVARVKALLRR 125 (233)
T ss_dssp CEEEEECCCTTTCCCTTT-----TTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHH-----HcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 7776 4333322222211 127889999999999999999998863
No 136
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=57.27 E-value=96 Score=26.87 Aligned_cols=108 Identities=12% Similarity=0.105 Sum_probs=65.2
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHh---cCC
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMR---YGA 508 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma---~G~ 508 (596)
..+++|+.+. ......+....++.|. ...-.-+.++....+.. .|++++-... +.-|+.+++.+. ..+
T Consensus 7 ~~~iLivdd~--~~~~~~l~~~L~~~g~----~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~ 80 (184)
T 3rqi_A 7 DKNFLVIDDN--EVFAGTLARGLERRGY----AVRQAHNKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDA 80 (184)
T ss_dssp CCEEEEECSC--HHHHHHHHHHHHHTTC----EEEEECSHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTC
T ss_pred CCeEEEEcCC--HHHHHHHHHHHHHCCC----EEEEeCCHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCC
Confidence 4567777761 2334455555555432 22334455555555544 4777765432 445677766654 366
Q ss_pred ceEE-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 509 VPVV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 509 pvI~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
|+|. |..... .+.+.. |..+|+..|.+.++|..+|..++.
T Consensus 81 ~ii~lt~~~~~~~~~~a~~~--------Ga~~~l~KP~~~~~L~~~i~~~~~ 124 (184)
T 3rqi_A 81 RILVLTGYASIATAVQAVKD--------GADNYLAKPANVESILAALQTNAS 124 (184)
T ss_dssp EEEEEESSCCHHHHHHHHHH--------TCSEEEESSCCHHHHHHHTSTTHH
T ss_pred CEEEEeCCCCHHHHHHHHHh--------CHHHheeCCCCHHHHHHHHHHHHH
Confidence 7776 444332 233334 678999999999999999988776
No 137
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=56.84 E-value=9.9 Score=37.38 Aligned_cols=35 Identities=20% Similarity=0.194 Sum_probs=27.1
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
++|||++. ||.+..-..+++.|.++||+|.++...
T Consensus 12 ~~M~ilVt----------GatG~iG~~l~~~L~~~g~~V~~~~r~ 46 (342)
T 2x4g_A 12 AHVKYAVL----------GATGLLGHHAARAIRAAGHDLVLIHRP 46 (342)
T ss_dssp CCCEEEEE----------STTSHHHHHHHHHHHHTTCEEEEEECT
T ss_pred cCCEEEEE----------CCCcHHHHHHHHHHHHCCCEEEEEecC
Confidence 45788766 555666668899999999999998743
No 138
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=55.71 E-value=73 Score=25.01 Aligned_cols=107 Identities=9% Similarity=0.080 Sum_probs=63.0
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHh--cCCce
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMR--YGAVP 510 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma--~G~pv 510 (596)
.+++|+.+. ......+....+..+. .+. ..-+.++....+.. .|++++-... +.-|+.+++.+. ..+|+
T Consensus 3 ~~ilivdd~--~~~~~~l~~~L~~~~~--~v~--~~~~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~i 76 (122)
T 1zgz_A 3 HHIVIVEDE--PVTQARLQSYFTQEGY--TVS--VTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGI 76 (122)
T ss_dssp CEEEEECSS--HHHHHHHHHHHHHTTC--EEE--EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEE
T ss_pred cEEEEEECC--HHHHHHHHHHHHHCCC--eEE--EecCHHHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCE
Confidence 356667651 2334455555554432 233 33344555555543 5888765443 345666776664 35666
Q ss_pred EE-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 511 VV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 511 I~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
|. +..... .+.+.. |..+++..|.+.+++...|.+++.
T Consensus 77 i~~s~~~~~~~~~~~~~~--------ga~~~l~Kp~~~~~l~~~i~~~~~ 118 (122)
T 1zgz_A 77 ILVTGRSDRIDRIVGLEM--------GADDYVTKPLELRELVVRVKNLLW 118 (122)
T ss_dssp EEEESSCCHHHHHHHHHH--------TCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEECCCChhhHHHHHHh--------CHHHHccCCCCHHHHHHHHHHHHH
Confidence 65 443332 222333 678999999999999999988875
No 139
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=55.69 E-value=79 Score=28.81 Aligned_cols=107 Identities=10% Similarity=0.099 Sum_probs=62.2
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHhc--CCce
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMRY--GAVP 510 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma~--G~pv 510 (596)
.+++|+.+. ....+.+....++.+. .|... -+.++....+. ..|++++-... +.-|+.+++.+.. .+|+
T Consensus 6 ~~ILivdd~--~~~~~~l~~~L~~~g~--~v~~~--~~~~~al~~l~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~i 79 (238)
T 2gwr_A 6 QRILVVDDD--ASLAEMLTIVLRGEGF--DTAVI--GDGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRADSGVPI 79 (238)
T ss_dssp CEEEEECSC--HHHHHHHHHHHHHTTC--EEEEE--CCGGGHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHTTCCCCE
T ss_pred CeEEEEeCC--HHHHHHHHHHHHHCCC--EEEEE--CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCcE
Confidence 456666651 2334445555544332 23322 23333444443 46888765443 4456666666643 6777
Q ss_pred EE-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 511 VV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 511 I~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
|. +..... .+.+.. |..|++..|.++++|..+|..++.
T Consensus 80 i~lt~~~~~~~~~~~~~~--------Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (238)
T 2gwr_A 80 VMLTAKTDTVDVVLGLES--------GADDYIMKPFKPKELVARVRARLR 121 (238)
T ss_dssp EEEEETTCCSCHHHHHHT--------TCCEEEEESCCHHHHHHHHHHHCC
T ss_pred EEEeCCCCHHHHHHHHHC--------CCCEEEeCCCCHHHHHHHHHHHHh
Confidence 76 433332 223333 678999999999999999998875
No 140
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=55.69 E-value=12 Score=34.16 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=25.2
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHH-hcCCeEEEEecc
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACL-SRGHTVDIMLPF 151 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~-~~Gh~V~vi~p~ 151 (596)
.+||.++|+ ||.+..-..+++.|. +.||+|.++...
T Consensus 3 ~mmk~vlVt---------Gasg~iG~~~~~~l~~~~g~~V~~~~r~ 39 (221)
T 3r6d_A 3 AMYXYITIL---------GAAGQIAQXLTATLLTYTDMHITLYGRQ 39 (221)
T ss_dssp CSCSEEEEE---------STTSHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred ceEEEEEEE---------eCCcHHHHHHHHHHHhcCCceEEEEecC
Confidence 457844454 444455557889999 899999998743
No 141
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=55.65 E-value=1.2e+02 Score=27.65 Aligned_cols=97 Identities=11% Similarity=0.102 Sum_probs=53.9
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHh-cCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEee
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLS-RGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHG 185 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~-~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (596)
++|||+++. .|.+.-...|..++.+ .+++|..+.+........+ ..
T Consensus 4 ~~~riavl~---------SG~Gsnl~all~~~~~~~~~eI~~Vis~~~~a~~~~------------------------~A 50 (215)
T 3tqr_A 4 EPLPIVVLI---------SGNGTNLQAIIGAIQKGLAIEIRAVISNRADAYGLK------------------------RA 50 (215)
T ss_dssp CCEEEEEEE---------SSCCHHHHHHHHHHHTTCSEEEEEEEESCTTCHHHH------------------------HH
T ss_pred CCcEEEEEE---------eCCcHHHHHHHHHHHcCCCCEEEEEEeCCcchHHHH------------------------HH
Confidence 568998874 3446777788888765 3577776554322111100 11
Q ss_pred eeCCeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHH
Q 043397 186 VVSSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLY 253 (596)
Q Consensus 186 ~~~gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~ 253 (596)
...|++++.+++. .+.. -..+...+.+.++. .+||+|.+-.|..-+-+.++
T Consensus 51 ~~~gIp~~~~~~~-~~~~--------------r~~~d~~~~~~l~~--~~~Dliv~agy~~il~~~~l 101 (215)
T 3tqr_A 51 QQADIPTHIIPHE-EFPS--------------RTDFESTLQKTIDH--YDPKLIVLAGFMRKLGKAFV 101 (215)
T ss_dssp HHTTCCEEECCGG-GSSS--------------HHHHHHHHHHHHHT--TCCSEEEESSCCSCCCHHHH
T ss_pred HHcCCCEEEeCcc-ccCc--------------hhHhHHHHHHHHHh--cCCCEEEEccchhhCCHHHH
Confidence 2368898887631 1110 01233445555553 69999998876544444443
No 142
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=55.56 E-value=69 Score=29.65 Aligned_cols=104 Identities=12% Similarity=0.007 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHH
Q 043397 421 LHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQ 500 (596)
Q Consensus 421 i~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~ 500 (596)
...+++|+.+.++.+-++-++|. +.....++.+.+-++. ++......+.+++...+.
T Consensus 92 ~~Dil~aL~~a~~~~~kIavVg~---~~~~~~~~~i~~ll~~--~i~~~~~~~~ee~~~~i~------------------ 148 (225)
T 2pju_A 92 GYDVLQFLAKAGKLTSSIGVVTY---QETIPALVAFQKTFNL--RLDQRSYITEEDARGQIN------------------ 148 (225)
T ss_dssp HHHHHHHHHHTTCTTSCEEEEEE---SSCCHHHHHHHHHHTC--CEEEEEESSHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHhhCCcEEEEeC---chhhhHHHHHHHHhCC--ceEEEEeCCHHHHHHHHH------------------
Confidence 35788888888765558888898 6667777888887776 488888888888776554
Q ss_pred HHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhc
Q 043397 501 MIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHF 558 (596)
Q Consensus 501 lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~ 558 (596)
++..-|+-+|+.+.. ..++.+.. |-+++++. +.+++.+++++++...
T Consensus 149 -~l~~~G~~vVVG~~~-~~~~A~~~-------Gl~~vlI~--s~eSI~~Ai~eA~~l~ 195 (225)
T 2pju_A 149 -ELKANGTEAVVGAGL-ITDLAEEA-------GMTGIFIY--SAATVRQAFSDALDMT 195 (225)
T ss_dssp -HHHHTTCCEEEESHH-HHHHHHHT-------TSEEEESS--CHHHHHHHHHHHHHHH
T ss_pred -HHHHCCCCEEECCHH-HHHHHHHc-------CCcEEEEC--CHHHHHHHHHHHHHHH
Confidence 333444444443211 12222221 34666666 3688999998888654
No 143
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=55.29 E-value=14 Score=31.45 Aligned_cols=37 Identities=14% Similarity=0.311 Sum_probs=29.1
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
+|||+++-.. ..|....++..+++.+.+.|++|.++-
T Consensus 1 M~ki~I~y~S-----~tGnT~~~A~~ia~~l~~~g~~v~~~~ 37 (148)
T 3f6r_A 1 MSKVLIVFGS-----STGNTESIAQKLEELIAAGGHEVTLLN 37 (148)
T ss_dssp -CEEEEEEEC-----SSSHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCeEEEEEEC-----CCchHHHHHHHHHHHHHhCCCeEEEEe
Confidence 4688777432 357888999999999999999999885
No 144
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=55.00 E-value=9 Score=37.85 Aligned_cols=37 Identities=22% Similarity=0.150 Sum_probs=24.8
Q ss_pred cCCCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 104 KDSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 104 ~~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
+..+.|+||+. ||.+..-..+++.|.++||+|.++..
T Consensus 15 ~~~~~~~vlVt----------GatG~iG~~l~~~L~~~G~~V~~~~r 51 (347)
T 4id9_A 15 VPRGSHMILVT----------GSAGRVGRAVVAALRTQGRTVRGFDL 51 (347)
T ss_dssp ------CEEEE----------TTTSHHHHHHHHHHHHTTCCEEEEES
T ss_pred cccCCCEEEEE----------CCCChHHHHHHHHHHhCCCEEEEEeC
Confidence 34456777765 66566666889999999999999863
No 145
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=54.63 E-value=43 Score=26.68 Aligned_cols=109 Identities=10% Similarity=0.084 Sum_probs=61.3
Q ss_pred EEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHh-----cCC
Q 043397 437 QMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMR-----YGA 508 (596)
Q Consensus 437 ~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma-----~G~ 508 (596)
+++|+.+. ......+....++.+. .+. ..-+.++....+. ..|++++-... +.-|+.+++.+. ..+
T Consensus 4 ~ilivdd~--~~~~~~l~~~l~~~g~--~v~--~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ 77 (127)
T 2jba_A 4 RILVVEDE--APIREMVCFVLEQNGF--QPV--EAEDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDI 77 (127)
T ss_dssp EEEEECSC--HHHHHHHHHHHHHTTC--EEE--EECSHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTS
T ss_pred EEEEEcCC--HHHHHHHHHHHHHCCc--eEE--EeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhCcccCCC
Confidence 56666661 2333445555554432 232 3334444444443 24777765433 334666777665 356
Q ss_pred ceEE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 509 VPVV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 509 pvI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
|+|. +..........-. ..|..+++..|.+.++|..+|.+++.
T Consensus 78 ~ii~~s~~~~~~~~~~~~-----~~ga~~~l~Kp~~~~~l~~~i~~~~~ 121 (127)
T 2jba_A 78 PVVMLTARGEEEDRVRGL-----ETGADDCITKPFSPKELVARIKAVMR 121 (127)
T ss_dssp CEEEEEETTHHHHHHTTC-----CCSCSEEEEESCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHH-----hcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 7776 4333322222111 12678999999999999999998876
No 146
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}
Probab=54.36 E-value=11 Score=33.93 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=23.7
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
++|||++. ||.+..-..+++.|. +|++|.++.
T Consensus 2 ~kM~vlVt----------Gasg~iG~~~~~~l~-~g~~V~~~~ 33 (202)
T 3d7l_A 2 NAMKILLI----------GASGTLGSAVKERLE-KKAEVITAG 33 (202)
T ss_dssp CSCEEEEE----------TTTSHHHHHHHHHHT-TTSEEEEEE
T ss_pred CCcEEEEE----------cCCcHHHHHHHHHHH-CCCeEEEEe
Confidence 45887665 444555557899999 999998886
No 147
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=54.11 E-value=84 Score=28.15 Aligned_cols=111 Identities=11% Similarity=0.111 Sum_probs=65.1
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHh---cCCc
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMR---YGAV 509 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma---~G~p 509 (596)
.+++|+.+. ......+....+..+. .|. ...+.++....+. ..|++++-... +.-|+.+++.+. ..+|
T Consensus 3 ~~ilivdd~--~~~~~~l~~~L~~~g~--~v~--~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ 76 (225)
T 1kgs_A 3 VRVLVVEDE--RDLADLITEALKKEMF--TVD--VCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTP 76 (225)
T ss_dssp CEEEEECSS--HHHHHHHHHHHHHTTC--EEE--EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCC
T ss_pred ceEEEEeCC--HHHHHHHHHHHHHCCC--EEE--EECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCC
Confidence 456677661 2334455555555332 233 3344455555554 35888775543 445677766664 3677
Q ss_pred eEE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 510 PVV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 510 vI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
+|. +..........-. ..|..|++..|.++++|..+|..++..
T Consensus 77 ii~ls~~~~~~~~~~~~-----~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 120 (225)
T 1kgs_A 77 VLMLTALSDVEYRVKGL-----NMGADDYLPKPFDLRELIARVRALIRR 120 (225)
T ss_dssp EEEEESSCHHHHHHHTC-----CCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHH-----hCCccEEEeCCCCHHHHHHHHHHHHhh
Confidence 776 4433322222211 126789999999999999999998863
No 148
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=54.07 E-value=84 Score=25.23 Aligned_cols=107 Identities=7% Similarity=0.039 Sum_probs=62.7
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHh---cCCc
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMR---YGAV 509 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma---~G~p 509 (596)
.+++|+.+. ......+....+..+. .|. ..-+.++....+. ..|++++-... ..-|+.+++.+. ..+|
T Consensus 4 ~~ilivdd~--~~~~~~l~~~L~~~g~--~v~--~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ 77 (136)
T 1mvo_A 4 KKILVVDDE--ESIVTLLQYNLERSGY--DVI--TASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFP 77 (136)
T ss_dssp CEEEEECSC--HHHHHHHHHHHHHTTC--EEE--EESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCC
T ss_pred CEEEEEECC--HHHHHHHHHHHHHCCc--EEE--EecCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCC
Confidence 466777761 2333445555554432 233 3334444444443 46888775443 334666666654 3567
Q ss_pred eEE-eCCCCccc---cccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 510 PVV-RKTGGLAD---TVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 510 vI~-s~~gg~~e---~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
+|. +..+.... .+.. |..+++..|.+.++|...|..++.
T Consensus 78 ii~~s~~~~~~~~~~~~~~--------g~~~~l~KP~~~~~l~~~i~~~~~ 120 (136)
T 1mvo_A 78 ILMLTAKDEEFDKVLGLEL--------GADDYMTKPFSPREVNARVKAILR 120 (136)
T ss_dssp EEEEECTTCCCCHHHHHHT--------TCCEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhC--------CCCEEEECCCCHHHHHHHHHHHHH
Confidence 765 44333222 2233 678999999999999999999886
No 149
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=53.71 E-value=10 Score=36.76 Aligned_cols=43 Identities=12% Similarity=0.042 Sum_probs=29.3
Q ss_pred HHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCcc
Q 043397 477 SHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLA 519 (596)
Q Consensus 477 l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~ 519 (596)
+.++++.+|+++--+..+..--.+..++..|+|+|+..+|-..
T Consensus 82 l~~ll~~aDVvIDFT~p~a~~~~~~~~l~~Gv~vViGTTG~~~ 124 (288)
T 3ijp_A 82 PESAFSNTEGILDFSQPQASVLYANYAAQKSLIHIIGTTGFSK 124 (288)
T ss_dssp HHHHTTSCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCH
T ss_pred HHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCH
Confidence 5567789999996554333222345678999999997776433
No 150
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=52.91 E-value=91 Score=25.27 Aligned_cols=110 Identities=10% Similarity=0.110 Sum_probs=63.9
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHhc-----C
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMRY-----G 507 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma~-----G 507 (596)
.+++|+.+. ......+....++.+. .|. ...+.++....+.. .|++++-... +.-|+.+++.+.. .
T Consensus 4 ~~ILivdd~--~~~~~~l~~~L~~~g~--~v~--~~~~~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ 77 (138)
T 3c3m_A 4 YTILVVDDS--PMIVDVFVTMLERGGY--RPI--TAFSGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRD 77 (138)
T ss_dssp CEEEEECSC--HHHHHHHHHHHHHTTC--EEE--EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTT
T ss_pred ceEEEEeCC--HHHHHHHHHHHHHcCc--eEE--EeCCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCcccCC
Confidence 356677661 2334455555555432 233 34455555555544 5888775543 4457777777753 5
Q ss_pred CceEE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 508 AVPVV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 508 ~pvI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
+|+|. +............. .+..+|+..|.+.++|..+|..++.
T Consensus 78 ~~ii~ls~~~~~~~~~~~~~-----~~~~~~l~KP~~~~~L~~~i~~~~~ 122 (138)
T 3c3m_A 78 IPVLMLTAKPLTPEEANEYG-----SYIEDYILKPTTHHQLYEAIEHVLA 122 (138)
T ss_dssp SCEEEEESSCCCHHHHHHTT-----TTCSEEEECCCHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCChHHHHHHhh-----cCHhheEeCCCCHHHHHHHHHHHHH
Confidence 67765 44332222221110 1347999999999999999998885
No 151
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=52.47 E-value=13 Score=34.13 Aligned_cols=32 Identities=41% Similarity=0.388 Sum_probs=26.8
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
|||+++ |+ +.+...+++.|.+.||+|.++...
T Consensus 1 M~iiIi----------G~-G~~G~~la~~L~~~g~~v~vid~~ 32 (218)
T 3l4b_C 1 MKVIII----------GG-ETTAYYLARSMLSRKYGVVIINKD 32 (218)
T ss_dssp CCEEEE----------CC-HHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CEEEEE----------CC-CHHHHHHHHHHHhCCCeEEEEECC
Confidence 778777 43 788889999999999999999754
No 152
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=52.33 E-value=88 Score=24.93 Aligned_cols=108 Identities=9% Similarity=0.098 Sum_probs=61.6
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHhc----C
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMRY----G 507 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma~----G 507 (596)
..+++|+.+. ......+....++.+. .| ...-+.++....+. ..|++++-... +.-|+.+++.+.. .
T Consensus 6 ~~~ilivdd~--~~~~~~l~~~L~~~g~--~v--~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~ 79 (132)
T 3lte_A 6 SKRILVVDDD--QAMAAAIERVLKRDHW--QV--EIAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVAN 79 (132)
T ss_dssp -CEEEEECSC--HHHHHHHHHHHHHTTC--EE--EEESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSS
T ss_pred CccEEEEECC--HHHHHHHHHHHHHCCc--EE--EEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccC
Confidence 4566777651 3344455555555332 23 33344444555543 35777765543 4456777777653 2
Q ss_pred CceEE-eCCCC---ccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 508 AVPVV-RKTGG---LADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 508 ~pvI~-s~~gg---~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
.|+|. +.... ..+.+.. |..+++..|.+.++|.++|.+...
T Consensus 80 ~~~ii~~~~~~~~~~~~~~~~--------g~~~~l~kP~~~~~l~~~i~~~~~ 124 (132)
T 3lte_A 80 QPKILVVSGLDKAKLQQAVTE--------GADDYLEKPFDNDALLDRIHDLVN 124 (132)
T ss_dssp CCEEEEECCSCSHHHHHHHHH--------TCCEEECSSCCHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCChHHHHHHHHh--------ChHHHhhCCCCHHHHHHHHHHHcC
Confidence 34443 32222 1222333 678999999999999999998875
No 153
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=52.27 E-value=23 Score=28.75 Aligned_cols=40 Identities=10% Similarity=0.035 Sum_probs=27.3
Q ss_pred CCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 106 SNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 106 ~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
.++|||++++..- ...+..+..+-++..++|.+|.+....
T Consensus 4 ~~~mkIlL~C~aG------mSTsllv~km~~~a~~~gi~v~i~a~~ 43 (108)
T 3nbm_A 4 SKELKVLVLCAGS------GTSAQLANAINEGANLTEVRVIANSGA 43 (108)
T ss_dssp -CCEEEEEEESSS------SHHHHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred ccCceEEEECCCC------CCHHHHHHHHHHHHHHCCCceEEEEcc
Confidence 4579999998421 233456666777777789999997633
No 154
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=52.24 E-value=95 Score=25.33 Aligned_cols=78 Identities=10% Similarity=0.026 Sum_probs=48.1
Q ss_pred ccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHh---cCCceEE-eCCCCc---cccccccCCCCCCCccceEEEe
Q 043397 471 MYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMR---YGAVPVV-RKTGGL---ADTVFDVDDPSNHEKANGFVFE 540 (596)
Q Consensus 471 ~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma---~G~pvI~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~ 540 (596)
.-+.++....+.. .|++++-... +.-|+.+++.+. ..+|+|. +..... .+.+.. |..+++..
T Consensus 35 ~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~--------ga~~~l~K 106 (141)
T 3cu5_A 35 ADDGINAIQIALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKF--------RAIRYVEK 106 (141)
T ss_dssp ESSHHHHHHHHTTSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECCSTTTCCC--------------CCCEEECS
T ss_pred cccHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCCCcHHHHHHHHhC--------CccEEEeC
Confidence 3444455555543 5888875543 345676666654 4667776 333322 222323 67899999
Q ss_pred CCCHHHHHHHHHHHHH
Q 043397 541 GIDEGSLNWALDRAFR 556 (596)
Q Consensus 541 ~~d~~~la~~i~~ll~ 556 (596)
|.+.++|.++|.+++.
T Consensus 107 P~~~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 107 PIDPSEIMDALKQSIQ 122 (141)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998886
No 155
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=52.16 E-value=82 Score=24.57 Aligned_cols=106 Identities=9% Similarity=0.088 Sum_probs=62.0
Q ss_pred EEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHh---cCCce
Q 043397 437 QMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMR---YGAVP 510 (596)
Q Consensus 437 ~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma---~G~pv 510 (596)
+++|+.+. ......+....++.|. .| ...-+.++....+.. .|++++-... ..-|+.+++.+. ..+|+
T Consensus 2 ~ilivdd~--~~~~~~l~~~l~~~g~--~v--~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~i 75 (121)
T 2pl1_A 2 RVLVVEDN--ALLRHHLKVQIQDAGH--QV--DDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPI 75 (121)
T ss_dssp EEEEECSC--HHHHHHHHHHHHHTTC--EE--EEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCE
T ss_pred eEEEEeCc--HHHHHHHHHHHhhcCC--EE--EEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCE
Confidence 45566651 2334445555554432 23 333444455555543 5888765433 345666777664 35666
Q ss_pred EE-eCCCCcc---ccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 511 VV-RKTGGLA---DTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 511 I~-s~~gg~~---e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
|. +..+... +.+.. |..+++..|.+.++|...|.+++.
T Consensus 76 i~~s~~~~~~~~~~~~~~--------g~~~~l~kp~~~~~l~~~i~~~~~ 117 (121)
T 2pl1_A 76 LVLTARESWQDKVEVLSA--------GADDYVTKPFHIEEVMARMQALMR 117 (121)
T ss_dssp EEEESCCCHHHHHHHHHT--------TCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHc--------CccceEECCCCHHHHHHHHHHHHH
Confidence 66 4443322 22333 678999999999999999988875
No 156
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=51.89 E-value=1.3e+02 Score=26.69 Aligned_cols=108 Identities=16% Similarity=0.223 Sum_probs=62.5
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEE-eccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHhc---CC
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRIL-LMYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMRY---GA 508 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~-g~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma~---G~ 508 (596)
.+++|+.+. ......+....+. .+.+... ..-+.++....+. ..|++++-... +.-|+.+++.+.. .+
T Consensus 6 ~~ilivdd~--~~~~~~l~~~L~~---~~~~~vv~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~ 80 (215)
T 1a04_A 6 ATILLIDDH--PMLRTGVKQLISM---APDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSG 80 (215)
T ss_dssp EEEEEECSC--HHHHHHHHHHHTT---CTTEEEEEEESSHHHHHHHHHHHCCSEEEEETTSTTSCHHHHHHHHHHSCCCS
T ss_pred eEEEEECCC--HHHHHHHHHHHhc---CCCcEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHHhCCCC
Confidence 466777761 2223333443332 2234443 3344444545443 35888775443 4457777766643 45
Q ss_pred ceEE-eCCCCcc---ccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 509 VPVV-RKTGGLA---DTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 509 pvI~-s~~gg~~---e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
|+|. +...... +.+.. |..||+..|.++++|..+|..++.
T Consensus 81 ~ii~ls~~~~~~~~~~~~~~--------Ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (215)
T 1a04_A 81 RIVVFSVSNHEEDVVTALKR--------GADGYLLKDMEPEDLLKALHQAAA 124 (215)
T ss_dssp EEEEEECCCCHHHHHHHHHT--------TCSEEEETTCCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCHHHHHHHHHc--------CCcEEEeCCCCHHHHHHHHHHHHc
Confidence 6665 4433322 22233 678999999999999999999886
No 157
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=51.87 E-value=83 Score=24.54 Aligned_cols=107 Identities=14% Similarity=0.173 Sum_probs=58.8
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHh---cCCc
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMR---YGAV 509 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma---~G~p 509 (596)
.+++|+.+. ......++...+..|. .+ ....-+.++....+. ..|++++-... +.-|+.+++.+. ..+|
T Consensus 3 ~~ilivdd~--~~~~~~l~~~l~~~g~--~v-v~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ 77 (120)
T 1tmy_A 3 KRVLIVDDA--AFMRMMLKDIITKAGY--EV-AGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAK 77 (120)
T ss_dssp CEEEEECSC--HHHHHHHHHHHHHTTC--EE-EEEESSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCC
T ss_pred ceEEEEcCc--HHHHHHHHHHHhhcCc--EE-EEEECCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCe
Confidence 356666651 2233444555444332 12 222333344444443 35877765433 334666666553 3567
Q ss_pred eEE-eCCCCcc---ccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHH
Q 043397 510 PVV-RKTGGLA---DTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAF 555 (596)
Q Consensus 510 vI~-s~~gg~~---e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll 555 (596)
+|. +...... +.... |..+++..|.+.++|...|.+++
T Consensus 78 ii~~s~~~~~~~~~~~~~~--------g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 78 IIVCSAMGQQAMVIEAIKA--------GAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EEEEECTTCHHHHHHHHHT--------TCCEEEESSCCHHHHHHHHHHHC
T ss_pred EEEEeCCCCHHHHHHHHHh--------CcceeEeCCCCHHHHHHHHHHHh
Confidence 766 4443322 22333 67899999999999999988764
No 158
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=51.44 E-value=97 Score=25.81 Aligned_cols=31 Identities=10% Similarity=-0.003 Sum_probs=20.8
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEE
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDI 147 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~v 147 (596)
+.||||+|=.+ .....-+.+.|.+.|+++..
T Consensus 11 k~~rILiVDD~----------~~~r~~l~~~L~~~G~~~v~ 41 (134)
T 3to5_A 11 KNMKILIVDDF----------STMRRIVKNLLRDLGFNNTQ 41 (134)
T ss_dssp TTCCEEEECSC----------HHHHHHHHHHHHHTTCCCEE
T ss_pred CCCEEEEEeCC----------HHHHHHHHHHHHHcCCcEEE
Confidence 46899999321 34445677778889987543
No 159
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=51.08 E-value=27 Score=33.67 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=29.0
Q ss_pred CCceeEEEEeecccccccccCHH-HHHhHHHHHHHhcCCeEEEEe
Q 043397 106 SNLMHIIHITAEMAPIAKVGGLG-DVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 106 ~~~mkIl~is~~~~P~~~~GG~~-~~~~~La~aL~~~Gh~V~vi~ 149 (596)
..+|||++|.... +.+|.. ..+..+++.+.+.|++|.++-
T Consensus 56 ~~~mKILiI~GS~----R~~S~T~~La~~~~~~l~~~G~eveiid 96 (279)
T 2fzv_A 56 APPVRILLLYGSL----RARSFSRLAVEEAARLLQFFGAETRIFD 96 (279)
T ss_dssp CSCCEEEEEESCC----SSSCHHHHHHHHHHHHHHHTTCEEEEBC
T ss_pred CCCCEEEEEEeCC----CCCCHHHHHHHHHHHHHhhCCCEEEEEe
Confidence 4579999998654 335544 555667788888899999885
No 160
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=50.97 E-value=77 Score=25.18 Aligned_cols=108 Identities=13% Similarity=0.087 Sum_probs=63.3
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHhc-----C
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMRY-----G 507 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma~-----G 507 (596)
.+++|+.+. ......+....++.+. . .....-+.++....+.. .|++++-... +.-|+.+++.+.. .
T Consensus 7 ~~ilivdd~--~~~~~~l~~~L~~~g~-~--~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ 81 (129)
T 1p6q_A 7 IKVLIVDDQ--VTSRLLLGDALQQLGF-K--QITAAGDGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKK 81 (129)
T ss_dssp CCEEEECSS--HHHHHHHHHHHHTTTC-S--CEECCSSHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTT
T ss_pred CeEEEEcCC--HHHHHHHHHHHHHCCC-c--EEEecCCHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHhcCccccC
Confidence 466777761 2233445555554332 1 22233344555555553 5888775443 3456777777643 4
Q ss_pred CceEE-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 508 AVPVV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 508 ~pvI~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
+|+|. +..+.. .+.+.. |..+++..|.+.++|..+|.+++.
T Consensus 82 ~~ii~~s~~~~~~~~~~~~~~--------g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 82 AAFIILTAQGDRALVQKAAAL--------GANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp CEEEECCSCCCHHHHHHHHHH--------TCSCEECCCSSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHc--------CCCEEEECCCCHHHHHHHHHHHHH
Confidence 56666 333332 222333 678999999999999999998875
No 161
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=50.77 E-value=17 Score=28.96 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=24.7
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcC-CeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRG-HTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~G-h~V~vi~p~ 151 (596)
+|+|+++ |+ +..-..+++.|.+.| ++|.++...
T Consensus 5 ~~~v~I~----------G~-G~iG~~~~~~l~~~g~~~v~~~~r~ 38 (118)
T 3ic5_A 5 RWNICVV----------GA-GKIGQMIAALLKTSSNYSVTVADHD 38 (118)
T ss_dssp CEEEEEE----------CC-SHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred cCeEEEE----------CC-CHHHHHHHHHHHhCCCceEEEEeCC
Confidence 4678876 44 555567889999999 999888643
No 162
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=50.63 E-value=99 Score=25.07 Aligned_cols=109 Identities=11% Similarity=0.072 Sum_probs=64.0
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEE-eccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHhc---C
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRIL-LMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMRY---G 507 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~-g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma~---G 507 (596)
..+++|+.+. ......+....++.+ .+... ..-+.++....+.. .|++++-... +.-|+.+++.+.. .
T Consensus 9 ~~~iLivdd~--~~~~~~l~~~L~~~~---~~~~v~~~~~~~~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~ 83 (143)
T 2qv0_A 9 KMKVIIVEDE--FLAQQELSWLINTHS---QMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHK 83 (143)
T ss_dssp -CEEEEECSC--HHHHHHHHHHHHHHS---CCEEEEEESCHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTSTTC
T ss_pred ceEEEEEcCC--HHHHHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHccCCC
Confidence 4677777761 233445555555432 23323 33445555555543 5888876543 4456777777654 3
Q ss_pred CceEE-eCCCC-ccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 508 AVPVV-RKTGG-LADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 508 ~pvI~-s~~gg-~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
.|+|. +.... ..+.+.. |..+++..|.+.++|...|.+++.
T Consensus 84 ~~ii~~s~~~~~~~~~~~~--------g~~~~l~KP~~~~~l~~~i~~~~~ 126 (143)
T 2qv0_A 84 PFIVFITAWKEHAVEAFEL--------EAFDYILKPYQESRIINMLQKLTT 126 (143)
T ss_dssp CEEEEEESCCTTHHHHHHT--------TCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHhC--------CcceEEeCCCCHHHHHHHHHHHHH
Confidence 33443 43322 2222333 678999999999999999999887
No 163
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=50.42 E-value=90 Score=24.48 Aligned_cols=106 Identities=13% Similarity=0.091 Sum_probs=60.7
Q ss_pred EEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHhc-----CC
Q 043397 437 QMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMRY-----GA 508 (596)
Q Consensus 437 ~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma~-----G~ 508 (596)
+++|+.+. ......+....+..+. .+ ...-+.++....+. ..|++++-... +.-|+.+++.+.. .+
T Consensus 3 ~ilivdd~--~~~~~~l~~~L~~~~~--~v--~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ 76 (124)
T 1mb3_A 3 KVLIVEDN--ELNMKLFHDLLEAQGY--ET--LQTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHI 76 (124)
T ss_dssp EEEEECSC--HHHHHHHHHHHHHTTC--EE--EEESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTS
T ss_pred EEEEEcCC--HHHHHHHHHHHHHcCc--EE--EEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCC
Confidence 45666651 2334445555555432 23 33344444544443 36888765443 4456777776653 56
Q ss_pred ceEE-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 509 VPVV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 509 pvI~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
|+|. +..... .+.... |..+++..|.+.++|..+|.+++.
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~--------g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 77 PVVAVTAFAMKGDEERIREG--------GCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp CEEEEC------CHHHHHHH--------TCSEEECSSCCHHHHHHHHHHHHS
T ss_pred cEEEEECCCCHHHHHHHHhC--------CCCEEEeCCCCHHHHHHHHHHHHh
Confidence 7776 332222 222333 678999999999999999988874
No 164
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=50.22 E-value=15 Score=32.70 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=25.6
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
|+|+++ ||.+..-..++++|.++||+|.++...
T Consensus 4 ~~ilVt----------GatG~iG~~l~~~l~~~g~~V~~~~r~ 36 (206)
T 1hdo_A 4 KKIAIF----------GATGQTGLTTLAQAVQAGYEVTVLVRD 36 (206)
T ss_dssp CEEEEE----------STTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEE----------cCCcHHHHHHHHHHHHCCCeEEEEEeC
Confidence 677765 555566668899999999999998743
No 165
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.04 E-value=74 Score=30.30 Aligned_cols=57 Identities=5% Similarity=0.041 Sum_probs=38.3
Q ss_pred CCccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcC
Q 043397 404 GTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHN 461 (596)
Q Consensus 404 ~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~ 461 (596)
....+|+|++.-.. -.-..++++++++++.++.+.|+|-..+....+.++++++..+
T Consensus 106 ~~~rIIlf~ds~~~-~~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~N 162 (268)
T 4b4t_W 106 QHQRIVAFVCSPIS-DSRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVN 162 (268)
T ss_dssp SEEEEEEEECSCCS-SCHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHC
T ss_pred CceEEEEEECCCCC-CCHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhc
Confidence 34456777765432 2567788999999888999988887212234566778777654
No 166
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=49.70 E-value=14 Score=38.67 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=28.9
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
++||+++.. | . .|--.-...|++.|+++||+|+++++.
T Consensus 8 ~~~vl~~p~---p--~-~GHi~P~l~La~~L~~rG~~VT~v~t~ 45 (482)
T 2pq6_A 8 KPHVVMIPY---P--V-QGHINPLFKLAKLLHLRGFHITFVNTE 45 (482)
T ss_dssp CCEEEEECC---S--S-HHHHHHHHHHHHHHHHTTCEEEEEEEH
T ss_pred CCEEEEecC---c--c-chhHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 479999852 2 2 444555678999999999999999854
No 167
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=49.26 E-value=20 Score=31.19 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=28.9
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
|||+++-.+ ..|....++..+++.|.+.|++|.++-
T Consensus 1 Mkv~IvY~S-----~tGnT~~~A~~ia~~l~~~g~~v~~~~ 36 (161)
T 3hly_A 1 MSVLIGYLS-----DYGYSDRLSQAIGRGLVKTGVAVEMVD 36 (161)
T ss_dssp -CEEEEECT-----TSTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEEEC-----CChHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 788877322 359999999999999999999998875
No 168
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}
Probab=49.23 E-value=14 Score=38.99 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=27.7
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+||||++ ||.|..-..++++|.++||+|.++...
T Consensus 147 ~m~VLVT----------GatG~IG~~l~~~L~~~G~~V~~l~R~ 180 (516)
T 3oh8_A 147 PLTVAIT----------GSRGLVGRALTAQLQTGGHEVIQLVRK 180 (516)
T ss_dssp CCEEEEE----------STTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEE----------CCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 7888876 666666678999999999999999854
No 169
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=49.17 E-value=1e+02 Score=24.75 Aligned_cols=107 Identities=13% Similarity=0.198 Sum_probs=62.2
Q ss_pred EEEEEecCCCCcchHHHHHHHHHcCCCCcEEEE-eccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHh---cCCc
Q 043397 437 QMILLGNSPVHWVQKDFEDLANLHNKGTSTRIL-LMYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMR---YGAV 509 (596)
Q Consensus 437 ~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~-g~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma---~G~p 509 (596)
+++|+.+ +......+....+..+ .+... ..-+.++....+. ..|++++-... ..-|+.+++.+. ..+|
T Consensus 5 ~Ilivdd--~~~~~~~l~~~l~~~~---~~~~v~~~~~~~~al~~~~~~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ 79 (133)
T 3b2n_A 5 SLIIAED--QNMLRQAMVQLIKLHG---DFEILADTDNGLDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIK 79 (133)
T ss_dssp EEEEECS--CHHHHHHHHHHHHHHS---SEEEEEEESCHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCE
T ss_pred EEEEECC--CHHHHHHHHHHHhhCC---CcEEEEEcCCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHHHCCCCc
Confidence 5566665 1233344555554433 22222 2334444545443 36888876543 345666666664 3566
Q ss_pred eEE-eCCCC---ccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 510 PVV-RKTGG---LADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 510 vI~-s~~gg---~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
+|. +.... ..+.+.. |..+++..|.+.++|...|.+++.
T Consensus 80 ii~ls~~~~~~~~~~~~~~--------ga~~~l~Kp~~~~~L~~~i~~~~~ 122 (133)
T 3b2n_A 80 VIIVTTFKRPGYFEKAVVN--------DVDAYVLKERSIEELVETINKVNN 122 (133)
T ss_dssp EEEEESCCCHHHHHHHHHT--------TCSEEEETTSCHHHHHHHHHHHHC
T ss_pred EEEEecCCCHHHHHHHHHc--------CCcEEEECCCCHHHHHHHHHHHHc
Confidence 666 44433 2233333 678999999999999999998875
No 170
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=49.00 E-value=57 Score=29.29 Aligned_cols=106 Identities=9% Similarity=0.047 Sum_probs=62.6
Q ss_pred EEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCC-CCCchHHHHHHh---cCCceEE
Q 043397 437 QMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIY-EPCGLAQMIGMR---YGAVPVV 512 (596)
Q Consensus 437 ~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~-E~~gl~~lEAma---~G~pvI~ 512 (596)
+++|+.+. ....+.+....+..+ ......+.++....+...|++++-... +.-|+.+++.+. ..+|+|.
T Consensus 4 ~ilivdd~--~~~~~~l~~~L~~~~-----~v~~~~~~~~al~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~ 76 (220)
T 1p2f_A 4 KIAVVDDD--KNILKKVSEKLQQLG-----RVKTFLTGEDFLNDEEAFHVVVLDVMLPDYSGYEICRMIKETRPETWVIL 76 (220)
T ss_dssp EEEEECSC--HHHHHHHHHHHTTTE-----EEEEESSHHHHHHCCSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred eEEEEeCC--HHHHHHHHHHHHhCC-----CEEEECCHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 55666651 223334444444322 223333444444444667888875443 445666666654 4677776
Q ss_pred -eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 513 -RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 513 -s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
+..... .+.+.. |..|++..|.+.++|..+|..++..
T Consensus 77 lt~~~~~~~~~~~~~~--------ga~~~l~Kp~~~~~L~~~i~~~~~~ 117 (220)
T 1p2f_A 77 LTLLSDDESVLKGFEA--------GADDYVTKPFNPEILLARVKRFLER 117 (220)
T ss_dssp EESCCSHHHHHHHHHH--------TCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHc--------CCCEEEECCCCHHHHHHHHHHHHcc
Confidence 443332 223333 6789999999999999999999864
No 171
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}
Probab=48.46 E-value=15 Score=35.77 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=21.2
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+..-..+++.|.++||+|.++..
T Consensus 8 GatG~iG~~l~~~L~~~g~~V~~~~r 33 (330)
T 2c20_A 8 GGAGYIGSHAVKKLVDEGLSVVVVDN 33 (330)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCcHHHHHHHHHHHhCCCEEEEEeC
Confidence 66666667899999999999999863
No 172
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=48.45 E-value=89 Score=27.87 Aligned_cols=107 Identities=11% Similarity=0.109 Sum_probs=59.3
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH---------------hCCEEEEcCCC-CCCch
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA---------------AADIVLVPSIY-EPCGL 498 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a---------------~aDi~l~PS~~-E~~gl 498 (596)
+.+++|+-+. ......+..+.++.|.. .+.-.-+.++...++. ..|++|+-... +.-|+
T Consensus 61 ~~~ILiVdDd--~~~~~~l~~~L~~~g~~---~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~ 135 (206)
T 3mm4_A 61 GKRVLVVDDN--FISRKVATGKLKKMGVS---EVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGY 135 (206)
T ss_dssp TCEEEEECSC--HHHHHHHHHHHHHTTCS---EEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHH
T ss_pred CCEEEEEeCC--HHHHHHHHHHHHHcCCC---eeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHH
Confidence 3466666651 23334445555544321 2223334444545544 36777765443 44566
Q ss_pred HHHHHHh-------cCCceEE-eCCC-C---ccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 499 AQMIGMR-------YGAVPVV-RKTG-G---LADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 499 ~~lEAma-------~G~pvI~-s~~g-g---~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
.+++.+. ..+|+|+ |... . ..+.+.. |..+|+..|.+ +|..+|.+++.
T Consensus 136 el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~--------Ga~~~l~KP~~--~L~~~i~~~l~ 195 (206)
T 3mm4_A 136 EATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQA--------GMDAFLDKSLN--QLANVIREIES 195 (206)
T ss_dssp HHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHH--------TCSEEEETTCT--THHHHHHHHC-
T ss_pred HHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhC--------CCCEEEcCcHH--HHHHHHHHHHh
Confidence 6666654 3567776 4333 2 1223333 67899999877 89999988886
No 173
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=48.21 E-value=1e+02 Score=24.47 Aligned_cols=110 Identities=14% Similarity=0.041 Sum_probs=65.7
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh---CCEEEEcCCC-C-CCchHHHHHHh---c
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA---ADIVLVPSIY-E-PCGLAQMIGMR---Y 506 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~---aDi~l~PS~~-E-~~gl~~lEAma---~ 506 (596)
..+++|+.+. ......+....+..|. .+...-+.++....+.. .|++++-... + .-|+.+++.+. .
T Consensus 5 ~~~ilivdd~--~~~~~~l~~~L~~~g~----~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~ 78 (132)
T 2rdm_A 5 AVTILLADDE--AILLLDFESTLTDAGF----LVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDP 78 (132)
T ss_dssp SCEEEEECSS--HHHHHHHHHHHHHTTC----EEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCT
T ss_pred CceEEEEcCc--HHHHHHHHHHHHHcCC----EEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCC
Confidence 4577777761 3344455555555443 33345555556666653 5888876544 3 45666666654 3
Q ss_pred CCceEE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 507 GAVPVV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 507 G~pvI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
.+|+|. +..........-. ...+++..|.+.++|..+|++++..
T Consensus 79 ~~~ii~~s~~~~~~~~~~~~-------~~~~~l~kP~~~~~l~~~i~~~~~~ 123 (132)
T 2rdm_A 79 NMPIVYISGHAALEWASNGV-------PDSIILEKPFTSAQLITAVSQLLNA 123 (132)
T ss_dssp TCCEEEEESSCCTTHHHHSC-------TTCEEEESSCCHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCccHHHHHhhc-------CCcceEeCCCCHHHHHHHHHHHHhc
Confidence 677776 4433332222211 1137999999999999999999874
No 174
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=48.17 E-value=25 Score=28.31 Aligned_cols=39 Identities=15% Similarity=0.059 Sum_probs=28.6
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhc-CC-eEEEEec
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSR-GH-TVDIMLP 150 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~-Gh-~V~vi~p 150 (596)
||++++...- |+ .......+..++.++.+. || +|.|+..
T Consensus 2 ~k~~ii~~~~-p~--~~~~~~~al~~a~~~~~~~g~~~v~vff~ 42 (117)
T 1jx7_A 2 QKIVIVANGA-PY--GSESLFNSLRLAIALREQESNLDLRLFLM 42 (117)
T ss_dssp CEEEEEECCC-TT--TCSHHHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred cEEEEEEcCC-CC--CcHHHHHHHHHHHHHHhcCCCccEEEEEE
Confidence 4788886544 43 234466678899999999 99 9988873
No 175
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=47.76 E-value=16 Score=34.24 Aligned_cols=37 Identities=16% Similarity=0.115 Sum_probs=25.5
Q ss_pred CCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 106 SNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 106 ~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
..+.|+++|| ||.+-.-..+++.|+++|++|.++...
T Consensus 19 ~~m~k~vlIT---------Gas~gIG~~la~~l~~~G~~V~~~~r~ 55 (251)
T 3orf_A 19 SHMSKNILVL---------GGSGALGAEVVKFFKSKSWNTISIDFR 55 (251)
T ss_dssp ---CCEEEEE---------TTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred cccCCEEEEE---------CCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3445777776 444555568999999999999888643
No 176
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=47.61 E-value=15 Score=35.50 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=26.3
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+|+|+++ ||.+..-..++++|.++||+|.++...
T Consensus 7 ~~~vlVt----------GatG~iG~~l~~~L~~~g~~V~~~~r~ 40 (321)
T 3vps_A 7 KHRILIT----------GGAGFIGGHLARALVASGEEVTVLDDL 40 (321)
T ss_dssp CCEEEEE----------TTTSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred CCeEEEE----------CCCChHHHHHHHHHHHCCCEEEEEecC
Confidence 4567665 666666678999999999999999743
No 177
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=47.29 E-value=98 Score=24.01 Aligned_cols=106 Identities=9% Similarity=0.087 Sum_probs=60.4
Q ss_pred EEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHh--cCCceE
Q 043397 437 QMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMR--YGAVPV 511 (596)
Q Consensus 437 ~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma--~G~pvI 511 (596)
+++|+.+. ......+....+..+. .+. ...+.++....+. ..|++++-... +.-|+.+++.+. ..+|+|
T Consensus 3 ~ilivdd~--~~~~~~l~~~l~~~~~--~v~--~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii 76 (120)
T 2a9o_A 3 KILIVDDE--KPISDIIKFNMTKEGY--EVV--TAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPIL 76 (120)
T ss_dssp EEEEECSC--HHHHHHHHHHHHHTTC--EEE--EESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEE
T ss_pred eEEEEcCC--HHHHHHHHHHHHhcCc--EEE--EecCHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEE
Confidence 45666651 2233445555544332 232 3334444444443 46888775443 334666665553 467777
Q ss_pred E-eCCCCcc---ccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 512 V-RKTGGLA---DTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 512 ~-s~~gg~~---e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
. +...... +.+.. |..+++..|.+.++|...|.+++.
T Consensus 77 ~~s~~~~~~~~~~~~~~--------g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (120)
T 2a9o_A 77 MLSAKDSEFDKVIGLEL--------GADDYVTKPFSNRELQARVKALLR 117 (120)
T ss_dssp EEESCCSHHHHHHHHHH--------TCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEecCCchHHHHHHHhC--------CHhheEeCCCCHHHHHHHHHHHHc
Confidence 6 4333322 22233 678999999999999999988875
No 178
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*
Probab=47.20 E-value=16 Score=35.26 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=25.0
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
|||++. ||.+..-..+++.|.++||+|.++..
T Consensus 1 m~vlVt----------GatG~iG~~l~~~L~~~g~~V~~~~r 32 (312)
T 3ko8_A 1 MRIVVT----------GGAGFIGSHLVDKLVELGYEVVVVDN 32 (312)
T ss_dssp CEEEEE----------TTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred CEEEEE----------CCCChHHHHHHHHHHhCCCEEEEEeC
Confidence 677655 55566666889999999999999874
No 179
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=47.10 E-value=16 Score=36.69 Aligned_cols=30 Identities=37% Similarity=0.454 Sum_probs=22.9
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEE
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIM 148 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi 148 (596)
.|||++|. ||..- ..+|..|+++|++|+|+
T Consensus 1 sm~V~IVG---------aGpaG--l~~A~~L~~~G~~v~v~ 30 (412)
T 4hb9_A 1 SMHVGIIG---------AGIGG--TCLAHGLRKHGIKVTIY 30 (412)
T ss_dssp CCEEEEEC---------CSHHH--HHHHHHHHHTTCEEEEE
T ss_pred CCEEEEEC---------cCHHH--HHHHHHHHhCCCCEEEE
Confidence 38999994 33333 45788899999999998
No 180
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=47.08 E-value=1.1e+02 Score=25.05 Aligned_cols=29 Identities=3% Similarity=0.050 Sum_probs=17.8
Q ss_pred cCCCceeEEEEeecccccccccCHHHHHhHHHHHHHhcC
Q 043397 104 KDSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRG 142 (596)
Q Consensus 104 ~~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~G 142 (596)
....+|||+++... ......+...|...|
T Consensus 16 ~~~~m~~iLivdd~----------~~~~~~l~~~L~~~~ 44 (150)
T 4e7p_A 16 PRGSHMKVLVAEDQ----------SMLRDAMCQLLTLQP 44 (150)
T ss_dssp ----CEEEEEECSC----------HHHHHHHHHHHHTST
T ss_pred CCCCccEEEEEcCC----------HHHHHHHHHHHHhCC
Confidence 44567899999532 445567777787777
No 181
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}
Probab=47.02 E-value=17 Score=33.79 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=20.2
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+-.-..+++.|.++|++|.++..
T Consensus 8 Gasg~iG~~l~~~L~~~g~~V~~~~r 33 (255)
T 2dkn_A 8 GSASGIGAALKELLARAGHTVIGIDR 33 (255)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCcHHHHHHHHHHHhCCCEEEEEeC
Confidence 55555556789999999999998863
No 182
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=47.01 E-value=17 Score=35.61 Aligned_cols=35 Identities=20% Similarity=0.109 Sum_probs=25.9
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
..||||+. ||.+..-..++++|.++||+|.++...
T Consensus 13 ~~~~vlVT----------GatG~iG~~l~~~L~~~g~~V~~~~r~ 47 (335)
T 1rpn_A 13 MTRSALVT----------GITGQDGAYLAKLLLEKGYRVHGLVAR 47 (335)
T ss_dssp --CEEEEE----------TTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cCCeEEEE----------CCCChHHHHHHHHHHHCCCeEEEEeCC
Confidence 45788765 555666668899999999999998743
No 183
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=46.64 E-value=1.1e+02 Score=24.35 Aligned_cols=108 Identities=14% Similarity=0.169 Sum_probs=62.1
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEe-ccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHhc----C
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILL-MYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMRY----G 507 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g-~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma~----G 507 (596)
.+++|+.+. ......++...++ .......+ .-+.++....+. ..|++++-... +.-|+.+++.+.. .
T Consensus 3 ~~ilivdd~--~~~~~~l~~~l~~---~~~~~~~~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ 77 (130)
T 1dz3_A 3 IKVCIADDN--RELVSLLDEYISS---QPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIRAGFEHQ 77 (130)
T ss_dssp EEEEEECSC--HHHHHHHHHHHHT---STTEEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHHCSSC
T ss_pred eEEEEEcCC--HHHHHHHHHHHHh---CCCceEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCC
Confidence 356677661 2233344444443 22344332 344455555554 36888875543 3456666666642 3
Q ss_pred CceEE-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 508 AVPVV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 508 ~pvI~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
.|+|. +..+.. .+.+.. |..+|+..|.+.++|..+|.+++.
T Consensus 78 ~~ii~ls~~~~~~~~~~~~~~--------ga~~~l~KP~~~~~l~~~i~~~~~ 122 (130)
T 1dz3_A 78 PNVIMLTAFGQEDVTKKAVEL--------GASYFILKPFDMENLAHHIRQVYG 122 (130)
T ss_dssp CEEEEEEETTCHHHHHHHHHT--------TCEEEEECSSCCTTHHHHHHHHHH
T ss_pred CcEEEEecCCCHHHHHHHHHc--------CCCEEEeCCCCHHHHHHHHHHHhc
Confidence 45554 443332 223333 678999999999999999999886
No 184
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=46.54 E-value=23 Score=32.17 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=30.4
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
.+|||++|... | .|-...++..+++.+.+.|++|.++-
T Consensus 5 ~mmkilii~~S--~---~g~T~~la~~i~~~l~~~g~~v~~~~ 42 (211)
T 1ydg_A 5 APVKLAIVFYS--S---TGTGYAMAQEAAEAGRAAGAEVRLLK 42 (211)
T ss_dssp CCCEEEEEECC--S---SSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCeEEEEEEC--C---CChHHHHHHHHHHHHhcCCCEEEEEe
Confidence 46899999543 3 36678888889999999999998885
No 185
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=46.39 E-value=1e+02 Score=24.07 Aligned_cols=107 Identities=7% Similarity=0.076 Sum_probs=61.3
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHh--cCCce
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMR--YGAVP 510 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma--~G~pv 510 (596)
.+++|+.+. ......+....++.+. .| ...-+.++....+.. .|++++-... +.-|+.+++.+. ..+|+
T Consensus 4 ~~ilivdd~--~~~~~~l~~~l~~~~~--~v--~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~i 77 (123)
T 1xhf_A 4 PHILIVEDE--LVTRNTLKSIFEAEGY--DV--FEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVAL 77 (123)
T ss_dssp CEEEEECSC--HHHHHHHHHHHHTTTC--EE--EEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEE
T ss_pred ceEEEEeCC--HHHHHHHHHHHhhCCc--EE--EEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcE
Confidence 356666651 2233444555444332 23 233444445555543 5888765443 334666665553 45666
Q ss_pred EE-eCCCCcc---ccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 511 VV-RKTGGLA---DTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 511 I~-s~~gg~~---e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
|. +...... +.+.. |..+++..|.+.++|...|..++.
T Consensus 78 i~~s~~~~~~~~~~~~~~--------g~~~~l~KP~~~~~l~~~i~~~~~ 119 (123)
T 1xhf_A 78 MFLTGRDNEVDKILGLEI--------GADDYITKPFNPRELTIRARNLLS 119 (123)
T ss_dssp EEEESCCSHHHHHHHHHH--------TCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEECCCChHHHHHHHhc--------CcceEEeCCCCHHHHHHHHHHHHH
Confidence 65 4433322 22333 678999999999999999988875
No 186
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=46.36 E-value=76 Score=24.76 Aligned_cols=106 Identities=11% Similarity=0.147 Sum_probs=57.8
Q ss_pred EEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHh--cCCceE
Q 043397 437 QMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMR--YGAVPV 511 (596)
Q Consensus 437 ~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma--~G~pvI 511 (596)
+++|+.+. ......+....+..+. ......+..+....+. ..|++++-... +.-|+.+++.+. ..+|+|
T Consensus 3 ~ilivdd~--~~~~~~l~~~l~~~~~----~v~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii 76 (121)
T 1zh2_A 3 NVLIVEDE--QAIRRFLRTALEGDGM----RVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVI 76 (121)
T ss_dssp EEEEECSC--HHHHHHHHHHHHTTTC----EEEEESSHHHHHHHHHHHCCSEEEEESEETTEEHHHHHHHHHTTCCCCEE
T ss_pred EEEEEeCC--HHHHHHHHHHHhcCCC----EEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhCCCCcEE
Confidence 45666651 2233444444443332 2223333333333332 46877764432 334666666664 345666
Q ss_pred E-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 512 V-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 512 ~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
. +..... .+.+.. |..+++..|.+.+++...|..++.
T Consensus 77 ~~s~~~~~~~~~~~~~~--------g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (121)
T 1zh2_A 77 VLSARSEESDKIAALDA--------GADDYLSKPFGIGELQARLRVALR 117 (121)
T ss_dssp EEESCCSHHHHHHHHHH--------TCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHhc--------CCCeEEeCCcCHHHHHHHHHHHHH
Confidence 5 443332 222333 678999999999999999988875
No 187
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=46.19 E-value=1.4e+02 Score=27.25 Aligned_cols=98 Identities=16% Similarity=0.146 Sum_probs=51.8
Q ss_pred CCCceeEEEEeecccccccccCHHHHHhHHHHHHHh-cCCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEE
Q 043397 105 DSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLS-RGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAY 183 (596)
Q Consensus 105 ~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~-~Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (596)
+..+|||+++. +|.+.....|..++.+ .+++|..+.+..+.. ..+
T Consensus 9 ~~~~~ri~vl~---------SG~gsnl~all~~~~~~~~~eI~~Vis~~~a~-~~~------------------------ 54 (215)
T 3da8_A 9 PSAPARLVVLA---------SGTGSLLRSLLDAAVGDYPARVVAVGVDRECR-AAE------------------------ 54 (215)
T ss_dssp CCSSEEEEEEE---------SSCCHHHHHHHHHSSTTCSEEEEEEEESSCCH-HHH------------------------
T ss_pred CCCCcEEEEEE---------eCChHHHHHHHHHHhccCCCeEEEEEeCCchH-HHH------------------------
Confidence 34678998874 3346666777777643 234776555433211 100
Q ss_pred eeeeCCeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHH
Q 043397 184 HGVVSSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLY 253 (596)
Q Consensus 184 ~~~~~gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~ 253 (596)
.....|++++.++. ..+.. -..|...+.+.++. .+||+|.+-.|..-+-+.++
T Consensus 55 ~A~~~gIp~~~~~~-~~~~~--------------r~~~d~~~~~~l~~--~~~Dlivlagy~~iL~~~~l 107 (215)
T 3da8_A 55 IAAEASVPVFTVRL-ADHPS--------------RDAWDVAITAATAA--HEPDLVVSAGFMRILGPQFL 107 (215)
T ss_dssp HHHHTTCCEEECCG-GGSSS--------------HHHHHHHHHHHHHT--TCCSEEEEEECCSCCCHHHH
T ss_pred HHHHcCCCEEEeCc-ccccc--------------hhhhhHHHHHHHHh--hCCCEEEEcCchhhCCHHHH
Confidence 11236788877642 11100 01233445555553 69999998766544444444
No 188
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=46.17 E-value=1.3e+02 Score=25.26 Aligned_cols=110 Identities=7% Similarity=0.045 Sum_probs=61.8
Q ss_pred cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEe-ccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHhc--C
Q 043397 434 LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILL-MYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMRY--G 507 (596)
Q Consensus 434 ~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g-~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma~--G 507 (596)
...+++|+.+. ......++...++.+ .....+ .-+.++....+. ..|++++-... +.-|+.+++.+.. .
T Consensus 24 ~~~~ILivdd~--~~~~~~l~~~L~~~~---~~~~v~~~~~~~~al~~l~~~~~dlvilD~~l~~~~g~~l~~~lr~~~~ 98 (164)
T 3t8y_A 24 RVIRVLVVDDS--AFMRMVLKDIIDSQP---DMKVVGFAKDGLEAVEKAIELKPDVITMDIEMPNLNGIEALKLIMKKAP 98 (164)
T ss_dssp CCEEEEEECSC--HHHHHHHHHHHHTST---TEEEEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHSC
T ss_pred CccEEEEEcCC--HHHHHHHHHHHhcCC---CeEEEEecCCHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 35678888871 233445555555432 333333 334444555543 46888876543 4556666665542 3
Q ss_pred CceEE-eCCCCc-----cccccccCCCCCCCccceEEEeCCC---------HHHHHHHHHHHHH
Q 043397 508 AVPVV-RKTGGL-----ADTVFDVDDPSNHEKANGFVFEGID---------EGSLNWALDRAFR 556 (596)
Q Consensus 508 ~pvI~-s~~gg~-----~e~i~~~~~~~~~~~~~G~lv~~~d---------~~~la~~i~~ll~ 556 (596)
+|+|. +..... .+.+.. |..+|+..|.+ .+++.++|.+++.
T Consensus 99 ~~ii~~s~~~~~~~~~~~~~~~~--------ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~ 154 (164)
T 3t8y_A 99 TRVIMVSSLTEEGAAITIEALRN--------GAVDFITKPHGSISLTFRQVAPELLEKIRQAMN 154 (164)
T ss_dssp CEEEEEESSCCTTCHHHHHHHHT--------TCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTT
T ss_pred ceEEEEecCCccchHHHHHHHHc--------CcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhC
Confidence 56655 332221 133434 68899999988 5666666666664
No 189
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=46.11 E-value=20 Score=32.11 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=30.0
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
++|||++|... .|-...++..+++.+.+.|++|.++-
T Consensus 3 ~mmkilii~~S------~g~T~~la~~i~~~l~~~g~~v~~~~ 39 (199)
T 2zki_A 3 CKPNILVLFYG------YGSIVELAKEIGKGAEEAGAEVKIRR 39 (199)
T ss_dssp CCCEEEEEECC------SSHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred CCcEEEEEEeC------ccHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 35899999654 26678888889999998999999885
No 190
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=46.06 E-value=18 Score=33.87 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=24.1
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||+++|| ||.+-.-..+++.|+++|++|.++..
T Consensus 1 mk~vlVT---------Gas~gIG~~~a~~l~~~G~~V~~~~r 33 (257)
T 1fjh_A 1 MSIIVIS---------GCATGIGAATRKVLEAAGHQIVGIDI 33 (257)
T ss_dssp CCEEEEE---------TTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEe---------CCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 6666665 44444455789999999999988863
No 191
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=45.98 E-value=23 Score=32.70 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=26.7
Q ss_pred CCCceeEEEEeecccccccccCHH-HHHhHHHHHHHhcCCeEEEEec
Q 043397 105 DSNLMHIIHITAEMAPIAKVGGLG-DVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 105 ~~~~mkIl~is~~~~P~~~~GG~~-~~~~~La~aL~~~Gh~V~vi~p 150 (596)
.+.+||||+|...-.+....++.. ..+..+++.+.+.||+|.++-.
T Consensus 22 ~~~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL 68 (218)
T 3rpe_A 22 SNAMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTV 68 (218)
T ss_dssp --CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred cccCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEEC
Confidence 445789999975432100123333 3444556666778999998853
No 192
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=45.92 E-value=18 Score=34.94 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=22.3
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||.+..-..++++|.++||+|.++...
T Consensus 9 GatG~iG~~l~~~L~~~g~~V~~~~r~ 35 (311)
T 3m2p_A 9 GGTGFLGQYVVESIKNDGNTPIILTRS 35 (311)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCcHHHHHHHHHHHhCCCEEEEEeCC
Confidence 666667778999999999999998743
No 193
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=45.79 E-value=21 Score=33.65 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=28.1
Q ss_pred CceeEEEEeecccccccccCHH--HHHhHHHHHHHhcCCeEEEEe
Q 043397 107 NLMHIIHITAEMAPIAKVGGLG--DVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~--~~~~~La~aL~~~Gh~V~vi~ 149 (596)
++|||+.|+. ..||.| +.+.+||.+|+++|++|.++=
T Consensus 4 ~~~~vI~v~s------~kGGvGKTt~a~~LA~~la~~g~~VlliD 42 (257)
T 1wcv_1 4 AKVRRIALAN------QKGGVGKTTTAINLAAYLARLGKRVLLVD 42 (257)
T ss_dssp -CCCEEEECC------SSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEEe------CCCCchHHHHHHHHHHHHHHCCCCEEEEE
Confidence 4678777753 236655 678889999999999999985
No 194
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=45.74 E-value=19 Score=30.21 Aligned_cols=33 Identities=24% Similarity=0.196 Sum_probs=25.2
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+++|+++ |+ +..-..+++.|.+.||+|.++-..
T Consensus 6 ~~~v~I~----------G~-G~iG~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 6 RYEYIVI----------GS-EAAGVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CCSEEEE----------CC-SHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEE----------CC-CHHHHHHHHHHHHCCCeEEEEECC
Confidence 3467776 33 556678999999999999998743
No 195
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=45.62 E-value=12 Score=36.53 Aligned_cols=35 Identities=29% Similarity=0.244 Sum_probs=24.3
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
.+|+|+++. ..|++| ..++++|.++||+|.+++..
T Consensus 3 ~~~~ilVtG-------atG~iG---~~l~~~L~~~g~~V~~~~R~ 37 (321)
T 3c1o_A 3 HMEKIIIYG-------GTGYIG---KFMVRASLSFSHPTFIYARP 37 (321)
T ss_dssp -CCCEEEET-------TTSTTH---HHHHHHHHHTTCCEEEEECC
T ss_pred cccEEEEEc-------CCchhH---HHHHHHHHhCCCcEEEEECC
Confidence 356777662 234444 47888899999999998854
No 196
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=45.52 E-value=19 Score=35.45 Aligned_cols=34 Identities=18% Similarity=0.050 Sum_probs=26.5
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+|+||++ ||.+..-..+++.|.++||+|.++...
T Consensus 25 ~~~vlVt----------GatG~iG~~l~~~L~~~g~~V~~~~r~ 58 (351)
T 3ruf_A 25 PKTWLIT----------GVAGFIGSNLLEKLLKLNQVVIGLDNF 58 (351)
T ss_dssp CCEEEEE----------TTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCeEEEE----------CCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4677765 666666678999999999999999743
No 197
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Probab=45.36 E-value=18 Score=32.76 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=26.0
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
|||+++ ||.+..-..+++.|.+.||+|.++...
T Consensus 1 m~i~ii----------Ga~G~~G~~ia~~l~~~g~~V~~~~r~ 33 (212)
T 1jay_A 1 MRVALL----------GGTGNLGKGLALRLATLGHEIVVGSRR 33 (212)
T ss_dssp CEEEEE----------TTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CeEEEE----------cCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 677776 545677778999999999999988643
No 198
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=45.21 E-value=29 Score=32.19 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=32.2
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
.+||.++|+..-. .-|=..++..|+++|.++|++|..+=|
T Consensus 2 ~~mk~i~Itgt~t----~vGKT~vt~~L~~~l~~~G~~V~~~KP 41 (228)
T 3of5_A 2 NAMKKFFIIGTDT----EVGKTYISTKLIEVCEHQNIKSLCLKP 41 (228)
T ss_dssp TTCEEEEEEESSS----SSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred CCCcEEEEEeCCC----CCCHHHHHHHHHHHHHHCCCeeEEecc
Confidence 4689999986552 356677888999999999999998754
No 199
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=45.15 E-value=1.5e+02 Score=27.03 Aligned_cols=95 Identities=17% Similarity=0.211 Sum_probs=50.1
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhc--CCeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEeee
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSR--GHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGV 186 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~--Gh~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (596)
|||+++. .|.+.....|..++.+. +|+|..+.+..+.....+ ...
T Consensus 1 ~ri~vl~---------Sg~gsnl~ali~~~~~~~~~~~i~~Vis~~~~~~~~~------------------------~A~ 47 (212)
T 1jkx_A 1 MNIVVLI---------SGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLE------------------------RAR 47 (212)
T ss_dssp CEEEEEE---------SSCCHHHHHHHHHHHTTSSSSEEEEEEESCTTCHHHH------------------------HHH
T ss_pred CEEEEEE---------ECCcHHHHHHHHHHHcCCCCceEEEEEeCCCchHHHH------------------------HHH
Confidence 5787774 22245567778877765 577765553321111000 112
Q ss_pred eCCeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHH
Q 043397 187 VSSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLY 253 (596)
Q Consensus 187 ~~gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~ 253 (596)
..|++++.+++. .+.. -..|...+.+.++. .+||+|.+-.|..-+-+.++
T Consensus 48 ~~gIp~~~~~~~-~~~~--------------r~~~~~~~~~~l~~--~~~Dliv~agy~~il~~~~l 97 (212)
T 1jkx_A 48 QAGIATHTLIAS-AFDS--------------REAYDRELIHEIDM--YAPDVVVLAGFMRILSPAFV 97 (212)
T ss_dssp HTTCEEEECCGG-GCSS--------------HHHHHHHHHHHHGG--GCCSEEEESSCCSCCCHHHH
T ss_pred HcCCcEEEeCcc-cccc--------------hhhccHHHHHHHHh--cCCCEEEEeChhhhCCHHHH
Confidence 468888876531 1110 01233445555554 69999998866544333333
No 200
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=45.14 E-value=18 Score=34.22 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=29.1
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccch
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECI 155 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~ 155 (596)
+||||+....- =.+.-+..|+++|.+.| +|.|++|..++.
T Consensus 1 ~M~ILlTNDDG-------i~apGi~aL~~~l~~~g-~V~VVAP~~~~S 40 (251)
T 2phj_A 1 MPTFLLVNDDG-------YFSPGINALREALKSLG-RVVVVAPDRNLS 40 (251)
T ss_dssp -CEEEEECSSC-------TTCHHHHHHHHHHTTTS-EEEEEEESSCCT
T ss_pred CCEEEEECCCC-------CCCHHHHHHHHHHHhcC-CEEEEecCCCcc
Confidence 48998875432 22556778999999988 999999875543
No 201
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=44.66 E-value=20 Score=35.14 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=25.5
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
+.|+|++. ||.+..-..++++|.++||+|.++..
T Consensus 19 ~~~~vlVT----------GasG~iG~~l~~~L~~~g~~V~~~~r 52 (330)
T 2pzm_A 19 SHMRILIT----------GGAGCLGSNLIEHWLPQGHEILVIDN 52 (330)
T ss_dssp TCCEEEEE----------TTTSHHHHHHHHHHGGGTCEEEEEEC
T ss_pred CCCEEEEE----------CCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 44787765 45455556789999999999999874
No 202
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=44.47 E-value=1.5e+02 Score=25.43 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=42.1
Q ss_pred HHHHHhCCEEEEcCCCCCCchHHHH---HHhcCCceEE-eC--CC-CccccccccCCCCCCCccceEEEeCCCHHHHHHH
Q 043397 478 HMLYAAADIVLVPSIYEPCGLAQMI---GMRYGAVPVV-RK--TG-GLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWA 550 (596)
Q Consensus 478 ~~~~a~aDi~l~PS~~E~~gl~~lE---Ama~G~pvI~-s~--~g-g~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~ 550 (596)
...+..||+++.--. ++-.-+.+| |.+.|+||++ +. .+ .++-++.... .+..=-+.+..+ +++.+.
T Consensus 63 ~~~i~~aD~vvA~l~-~~d~Gt~~EiG~A~algkPV~~l~~~~~~~~ls~mi~G~~-----~~~~~~~~~Y~~-~el~~i 135 (152)
T 4fyk_A 63 LNWLQQADVVVAEVT-QPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAA-----DGSRFQVWDYAE-GEVETM 135 (152)
T ss_dssp HHHHHHCSEEEEECS-SCCHHHHHHHHHHHHTTCCEEEEECGGGSCCCCHHHHHHC-----CSSSEEEEECCT-TCHHHH
T ss_pred HHHHHHCCEEEEeCC-CCCCCHHHHHHHHHHcCCeEEEEEeCCccchhHHHHcCCC-----CCCeEEEEEecH-HHHHHH
Confidence 356899999987433 444444444 6789999999 33 22 2333443210 012233444545 788888
Q ss_pred HHHHHH
Q 043397 551 LDRAFR 556 (596)
Q Consensus 551 i~~ll~ 556 (596)
|.+.++
T Consensus 136 l~~f~~ 141 (152)
T 4fyk_A 136 LDRYFE 141 (152)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 888775
No 203
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=44.21 E-value=16 Score=33.63 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=23.8
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||+++|| ||.+-.-..+++.|+++|++|.++...
T Consensus 1 Mk~vlVT---------Gas~gIG~~~a~~l~~~G~~V~~~~r~ 34 (230)
T 3guy_A 1 MSLIVIT---------GASSGLGAELAKLYDAEGKATYLTGRS 34 (230)
T ss_dssp --CEEEE---------STTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEe---------cCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 6766775 444445558899999999999888643
No 204
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=43.83 E-value=24 Score=31.49 Aligned_cols=37 Identities=11% Similarity=0.184 Sum_probs=29.2
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHh-cCCeEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLS-RGHTVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~-~Gh~V~vi~ 149 (596)
+|||++|... + .|-...++..+++.+.+ .|++|.++-
T Consensus 1 Mmkilii~~S--~---~g~t~~la~~i~~~l~~~~g~~v~~~~ 38 (198)
T 3b6i_A 1 MAKVLVLYYS--M---YGHIETMARAVAEGASKVDGAEVVVKR 38 (198)
T ss_dssp -CEEEEEECC--S---SSHHHHHHHHHHHHHHTSTTCEEEEEE
T ss_pred CCeEEEEEeC--C---CcHHHHHHHHHHHHHhhcCCCEEEEEE
Confidence 4799998644 3 36678888889999988 899999885
No 205
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=43.78 E-value=18 Score=34.34 Aligned_cols=33 Identities=18% Similarity=0.123 Sum_probs=25.6
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+|||+++ |+ |..-..++++|.++||+|.+++..
T Consensus 5 ~~~ilVt----------Ga-G~iG~~l~~~L~~~g~~V~~~~r~ 37 (286)
T 3ius_A 5 TGTLLSF----------GH-GYTARVLSRALAPQGWRIIGTSRN 37 (286)
T ss_dssp CCEEEEE----------TC-CHHHHHHHHHHGGGTCEEEEEESC
T ss_pred cCcEEEE----------CC-cHHHHHHHHHHHHCCCEEEEEEcC
Confidence 4677766 44 555668899999999999999854
No 206
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=43.56 E-value=24 Score=31.73 Aligned_cols=39 Identities=5% Similarity=-0.043 Sum_probs=28.5
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHH-HHhcCCeEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARA-CLSRGHTVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~a-L~~~Gh~V~vi~ 149 (596)
+|||++|..... ..|-...++..+++. +.+.|++|.++-
T Consensus 2 Mmkilii~gS~r---~~g~t~~la~~i~~~~l~~~g~~v~~~d 41 (197)
T 2vzf_A 2 TYSIVAISGSPS---RNSTTAKLAEYALAHVLARSDSQGRHIH 41 (197)
T ss_dssp CEEEEEEECCSS---TTCHHHHHHHHHHHHHHHHSSEEEEEEE
T ss_pred CceEEEEECCCC---CCChHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 579999975432 234466777778888 888899999885
No 207
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=43.09 E-value=34 Score=28.75 Aligned_cols=42 Identities=10% Similarity=-0.060 Sum_probs=29.9
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
.++|++++...- |+ ...-...+..+|.+.++.||+|.|+...
T Consensus 14 ~~~kl~ii~~sg-P~--~~~~~~~al~lA~~A~a~g~eV~vFf~~ 55 (134)
T 3mc3_A 14 QXXXILIVVTHG-PE--DLDRTYAPLFMASISASMEYETSVFFMI 55 (134)
T ss_dssp CCCEEEEEECCC-GG--GTHHHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred ccceEEEEEccC-CC--CHHHHHHHHHHHHHHHHCCCCEEEEEEe
Confidence 356888886553 43 2344666777888888999999988743
No 208
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=43.01 E-value=37 Score=28.94 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=25.9
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
..++|+++ |+ +.+-..+++.|.+.|++|.++...
T Consensus 18 ~~~~v~Ii----------G~-G~iG~~la~~L~~~g~~V~vid~~ 51 (155)
T 2g1u_A 18 KSKYIVIF----------GC-GRLGSLIANLASSSGHSVVVVDKN 51 (155)
T ss_dssp CCCEEEEE----------CC-SHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCcEEEE----------CC-CHHHHHHHHHHHhCCCeEEEEECC
Confidence 45788887 32 555567888999999999998754
No 209
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=42.51 E-value=20 Score=35.05 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=20.7
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+..-..+++.|.++||+|.++..
T Consensus 8 GatG~iG~~l~~~L~~~g~~V~~~~r 33 (347)
T 1orr_A 8 GGCGFLGSNLASFALSQGIDLIVFDN 33 (347)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCchhHHHHHHHHHhCCCEEEEEeC
Confidence 55566666889999999999999863
No 210
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=42.35 E-value=71 Score=28.70 Aligned_cols=104 Identities=14% Similarity=0.155 Sum_probs=60.6
Q ss_pred EEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCCCCCchHHHHHHhc---CCceE
Q 043397 437 QMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIYEPCGLAQMIGMRY---GAVPV 511 (596)
Q Consensus 437 ~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~E~~gl~~lEAma~---G~pvI 511 (596)
+++|+.+ +......+....+..+. .|. ..-+.++....+.. .|++++| +.-|+.+++.+.. .+|+|
T Consensus 2 ~ilivdd--~~~~~~~l~~~L~~~g~--~v~--~~~~~~~al~~l~~~~~dlvilp---~~~g~~~~~~lr~~~~~~~ii 72 (223)
T 2hqr_A 2 RVLLIEK--NSVLGGEIEKGLNVKGF--MAD--VTESLEDGEYLMDIRNYDLVMVS---DKNALSFVSRIKEKHSSIVVL 72 (223)
T ss_dssp CEEEECS--CHHHHHHHHHHHGGGTC--CEE--EESSHHHHHHHHTTSCCSEEEEC---CTTHHHHHHHHHHHCTTSEEE
T ss_pred EEEEEcC--CHHHHHHHHHHHHHCCc--EEE--EECCHHHHHHHHhcCCCCEEEeC---CCCHHHHHHHHHhCCCCCcEE
Confidence 3455554 12334445555554333 233 34445555555543 5888833 3446666665542 67777
Q ss_pred E-eCCCCc---cccccccCCCCCCCccceEEEeCC-CHHHHHHHHHHHHHh
Q 043397 512 V-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGI-DEGSLNWALDRAFRH 557 (596)
Q Consensus 512 ~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~-d~~~la~~i~~ll~~ 557 (596)
. +..... .+.+.. |..|++..|. +.++|..+|..++..
T Consensus 73 ~lt~~~~~~~~~~~~~~--------Ga~~~l~Kp~~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 73 VSSDNPTSEEEVHAFEQ--------GADDYIAKPYRSIKALVARIEARLRF 115 (223)
T ss_dssp EEESSCCHHHHHHHHHH--------TCSEEEETTCSCTHHHHHHHHHHTSS
T ss_pred EEECCCCHHHHHHHHHc--------CCCEEEECCCCCHHHHHHHHHHHhcc
Confidence 6 443332 222333 6789999999 999999999998763
No 211
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=42.33 E-value=1.9e+02 Score=26.72 Aligned_cols=24 Identities=4% Similarity=-0.036 Sum_probs=21.8
Q ss_pred ccceEEEeCCCHHHHHHHHHHHHH
Q 043397 533 KANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 533 ~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
|.++|+..|.+.++|.+.|.+++.
T Consensus 223 G~~~~l~KP~~~~~L~~~l~~~~~ 246 (254)
T 2ayx_A 223 GMDSCLSKPVTLDVIKQTLTLYAE 246 (254)
T ss_dssp CCEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCHHHHHHHHHHHHH
Confidence 678999999999999999998886
No 212
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=42.10 E-value=80 Score=25.93 Aligned_cols=107 Identities=7% Similarity=-0.093 Sum_probs=64.1
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEe-ccCHHHHHHHHHh--CCEEEEcCC-CCCCchHHHHHHh-cCCc
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILL-MYSEELSHMLYAA--ADIVLVPSI-YEPCGLAQMIGMR-YGAV 509 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g-~~~~~~l~~~~a~--aDi~l~PS~-~E~~gl~~lEAma-~G~p 509 (596)
..+++|+=+. ......++...++.|.. | .+ .-+.++..++++. .|++++--. -+.-|+.+++.+. .++|
T Consensus 8 ~~rILiVdD~--~~~~~~l~~~L~~~G~~--v--~~~a~~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ip 81 (123)
T 2lpm_A 8 RLRVLVVEDE--SMIAMLIEDTLCELGHE--V--AATASRMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNVP 81 (123)
T ss_dssp CCCEEEESSS--TTTSHHHHHHHHHHCCC--C--CBCSCCHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCS
T ss_pred CCEEEEEeCC--HHHHHHHHHHHHHCCCE--E--EEEECCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCC
Confidence 4566777662 34455666666666542 2 22 2345555555554 477776543 2456777776663 5778
Q ss_pred eEE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHH
Q 043397 510 PVV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAF 555 (596)
Q Consensus 510 vI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll 555 (596)
+|. |..+.. +.... .+..+|+..|.++++|..+|.+++
T Consensus 82 vI~lTa~~~~-~~~~~-------~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 82 FIFATGYGSK-GLDTR-------YSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp SCCBCTTCTT-SCCSS-------SCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred EEEEecCccH-HHHHh-------CCCCcEEECCCCHHHHHHHHHHHH
Confidence 776 433321 22111 156789999999999999887664
No 213
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=41.94 E-value=28 Score=29.37 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=28.2
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
|||+++-.. ..|-...++..+++.+.+.|++|.++-
T Consensus 1 mki~iiy~S-----~~Gnt~~~a~~i~~~l~~~g~~v~~~~ 36 (147)
T 1f4p_A 1 PKALIVYGS-----TTGNTEYTAETIARELADAGYEVDSRD 36 (147)
T ss_dssp CEEEEEEEC-----SSSHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CeEEEEEEC-----CcCHHHHHHHHHHHHHHhcCCeeEEEe
Confidence 788777322 247778899999999999999998874
No 214
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=41.81 E-value=25 Score=35.22 Aligned_cols=35 Identities=23% Similarity=0.102 Sum_probs=26.1
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
.+|+|++. ||.+..-..+++.|.++||+|.++...
T Consensus 28 ~~~~vlVt----------GatG~iG~~l~~~L~~~g~~V~~~~r~ 62 (379)
T 2c5a_A 28 ENLKISIT----------GAGGFIASHIARRLKHEGHYVIASDWK 62 (379)
T ss_dssp SCCEEEEE----------TTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred cCCeEEEE----------CCccHHHHHHHHHHHHCCCeEEEEECC
Confidence 34677655 555666668899999999999998743
No 215
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=41.70 E-value=20 Score=34.65 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=25.0
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
++|||++|. .|.+-..++..|.+.||+|+++...
T Consensus 2 ~~m~i~iiG-----------~G~~G~~~a~~l~~~g~~V~~~~r~ 35 (316)
T 2ew2_A 2 NAMKIAIAG-----------AGAMGSRLGIMLHQGGNDVTLIDQW 35 (316)
T ss_dssp --CEEEEEC-----------CSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCeEEEEC-----------cCHHHHHHHHHHHhCCCcEEEEECC
Confidence 458999882 2455567889999999999998743
No 216
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=41.51 E-value=34 Score=32.11 Aligned_cols=47 Identities=21% Similarity=0.196 Sum_probs=32.8
Q ss_pred cccccCCCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 100 AEIEKDSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 100 ~~~~~~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
++...-+++||.++|+..- ..-|=..++..|+++|.++|.+|..+=|
T Consensus 12 ~~~~~~~~m~k~i~ItgT~----t~vGKT~vs~gL~~~L~~~G~~V~~fKP 58 (242)
T 3qxc_A 12 SGRENLYFQGHMLFISATN----TNAGKTTCARLLAQYCNACGVKTILLKP 58 (242)
T ss_dssp -------CCCEEEEEEESS----TTSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred chhhHHhhcCcEEEEEeCC----CCCcHHHHHHHHHHHHHhCCCceEEEee
Confidence 3344556678999998654 2356677889999999999999999865
No 217
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=41.34 E-value=22 Score=31.99 Aligned_cols=37 Identities=14% Similarity=0.248 Sum_probs=28.9
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
.|||+++-.. ..|..+.++..+++.|.+.|++|.++.
T Consensus 21 ~~kv~IvY~S-----~tGnTe~~A~~ia~~l~~~g~~v~v~~ 57 (191)
T 1bvy_F 21 NTPLLVLYGS-----NMGTAEGTARDLADIAMSKGFAPQVAT 57 (191)
T ss_dssp CCCEEEEEEC-----SSSHHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred CCeEEEEEEC-----CChHHHHHHHHHHHHHHhCCCceEEee
Confidence 4666665221 468899999999999999999998875
No 218
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=41.19 E-value=18 Score=33.42 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=25.1
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcC-CeEEEEecc
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRG-HTVDIMLPF 151 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~G-h~V~vi~p~ 151 (596)
.+||.++|| ||.+..-..+++.|.++| ++|.++...
T Consensus 21 ~~mk~vlVt---------GatG~iG~~l~~~L~~~G~~~V~~~~R~ 57 (236)
T 3qvo_A 21 GHMKNVLIL---------GAGGQIARHVINQLADKQTIKQTLFARQ 57 (236)
T ss_dssp -CCEEEEEE---------TTTSHHHHHHHHHHTTCTTEEEEEEESS
T ss_pred CcccEEEEE---------eCCcHHHHHHHHHHHhCCCceEEEEEcC
Confidence 346655554 554555568899999999 899998743
No 219
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=41.11 E-value=25 Score=29.98 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=21.0
Q ss_pred HHHHhHHHHHHHhcCCeEEEEecc
Q 043397 128 GDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 128 ~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+.+...+++.|.+.||+|+++...
T Consensus 12 G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 12 SILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CHHHHHHHHHHHHCCCCEEEEECC
Confidence 777789999999999999999754
No 220
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=40.96 E-value=29 Score=30.98 Aligned_cols=40 Identities=3% Similarity=0.107 Sum_probs=27.9
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcC--CeEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRG--HTVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~G--h~V~vi~ 149 (596)
+||||+|.....+ ..|-...++..+++.+.++| ++|.++-
T Consensus 1 Mmkilii~~S~~~--~~s~t~~la~~~~~~l~~~g~~~~v~~~d 42 (201)
T 1t5b_A 1 MSKVLVLKSSILA--GYSQSGQLTDYFIEQWREKHVADEITVRD 42 (201)
T ss_dssp CCEEEEEECCSSG--GGCHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CCeEEEEEeCCCC--CCChHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 4799999754321 12445667777888888876 8988875
No 221
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=40.94 E-value=24 Score=32.48 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=25.3
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||+++|| ||.+-.-..+++.|+++|++|.++...
T Consensus 2 ~k~vlIT---------Gas~gIG~~ia~~l~~~G~~V~~~~r~ 35 (235)
T 3l77_A 2 MKVAVIT---------GASRGIGEAIARALARDGYALALGARS 35 (235)
T ss_dssp CCEEEEE---------SCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEE---------CCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 6777776 444445558899999999999888643
No 222
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Probab=40.87 E-value=22 Score=34.34 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=20.0
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
||.+-.-..++++|.++||+|.++.
T Consensus 7 GatG~iG~~l~~~L~~~G~~V~~~~ 31 (311)
T 2p5y_A 7 GGAGFIGSHIVEDLLARGLEVAVLD 31 (311)
T ss_dssp TTTSHHHHHHHHHHHTTTCEEEEEC
T ss_pred eCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 5555555678999999999998875
No 223
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=40.81 E-value=21 Score=34.37 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=28.4
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFY 152 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~ 152 (596)
.++||++ || |.++...++.|.+.|++|+|+.|..
T Consensus 13 ~k~VLVV----------Gg-G~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 13 DKRILLI----------GG-GEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp TCEEEEE----------EE-SHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred CCEEEEE----------CC-cHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 3688887 44 6788899999999999999998754
No 224
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=40.74 E-value=31 Score=30.79 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=29.5
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
+|||++|... | .|-...++..+++.+.+.|++|.++-
T Consensus 5 M~kilii~~S--~---~g~T~~la~~i~~~l~~~g~~v~~~~ 41 (200)
T 2a5l_A 5 SPYILVLYYS--R---HGATAEMARQIARGVEQGGFEARVRT 41 (200)
T ss_dssp CCEEEEEECC--S---SSHHHHHHHHHHHHHHHTTCEEEEEB
T ss_pred cceEEEEEeC--C---CChHHHHHHHHHHHHhhCCCEEEEEE
Confidence 4599998644 3 36678888889999999999999885
No 225
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=40.68 E-value=29 Score=33.76 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=28.1
Q ss_pred CCCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 105 DSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 105 ~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
..++|||.+|. .|.+-..+++.|.+.||+|.++-..
T Consensus 18 ~~~m~~I~iIG-----------~G~mG~~~A~~l~~~G~~V~~~dr~ 53 (310)
T 3doj_A 18 GSHMMEVGFLG-----------LGIMGKAMSMNLLKNGFKVTVWNRT 53 (310)
T ss_dssp CCCSCEEEEEC-----------CSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cccCCEEEEEC-----------ccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34568999982 3566678999999999999988644
No 226
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=40.67 E-value=24 Score=34.48 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=20.8
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+..-..+++.|.++||+|.++..
T Consensus 28 GatG~iG~~l~~~L~~~g~~V~~~~r 53 (333)
T 2q1w_A 28 GICGQIGSHIAELLLERGDKVVGIDN 53 (333)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCccHHHHHHHHHHHHCCCEEEEEEC
Confidence 55555666889999999999999874
No 227
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=40.58 E-value=27 Score=33.11 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=24.6
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
.|+++|| ||.+-.-..+++.|+++|++|.++...
T Consensus 21 ~k~~lVT---------Gas~gIG~~ia~~l~~~G~~V~~~~r~ 54 (267)
T 1vl8_A 21 GRVALVT---------GGSRGLGFGIAQGLAEAGCSVVVASRN 54 (267)
T ss_dssp TCEEEEE---------TTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEE---------CCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3667775 444444458899999999999888643
No 228
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=40.56 E-value=1.1e+02 Score=28.33 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=21.8
Q ss_pred ccceEEEeCCCHHHHHHHHHHHHH
Q 043397 533 KANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 533 ~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
|..||+..|.+.++|..+|..++.
T Consensus 130 Ga~~yl~Kp~~~~~L~~~i~~~l~ 153 (249)
T 3q9s_A 130 GADDYLIKPFHPDELLARVKVQLR 153 (249)
T ss_dssp TCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCcEEEECCCCHHHHHHHHHHHHh
Confidence 578999999999999999998885
No 229
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=40.35 E-value=47 Score=27.07 Aligned_cols=108 Identities=11% Similarity=0.078 Sum_probs=61.9
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC-C--CCchHHHHHHhc---C
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY-E--PCGLAQMIGMRY---G 507 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~-E--~~gl~~lEAma~---G 507 (596)
.+++|+.+. ......+....++.| +.+...-+.++....+.. .|++++-... + .-|+.+++.+.. .
T Consensus 7 ~~ilivdd~--~~~~~~l~~~L~~~g----~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~ 80 (136)
T 3kto_A 7 PIIYLVDHQ--KDARAALSKLLSPLD----VTIQCFASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFH 80 (136)
T ss_dssp CEEEEECSC--HHHHHHHHHHHTTSS----SEEEEESSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCC
T ss_pred CeEEEEcCC--HHHHHHHHHHHHHCC----cEEEEeCCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCC
Confidence 466777651 223344444444432 233333344444444432 4666665443 3 456666665543 5
Q ss_pred CceEE-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 508 AVPVV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 508 ~pvI~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
+|+|. +..... .+.+.. |..+++..|.+.++|..+|.+++..
T Consensus 81 ~~ii~~s~~~~~~~~~~~~~~--------ga~~~l~KP~~~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 81 LPTIVMASSSDIPTAVRAMRA--------SAADFIEKPFIEHVLVHDVQQIING 126 (136)
T ss_dssp CCEEEEESSCCHHHHHHHHHT--------TCSEEEESSBCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHc--------ChHHheeCCCCHHHHHHHHHHHHhc
Confidence 67776 443332 223333 6789999999999999999999873
No 230
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=40.24 E-value=1.4e+02 Score=23.97 Aligned_cols=108 Identities=8% Similarity=0.023 Sum_probs=62.1
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHh------
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMR------ 505 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma------ 505 (596)
..+++|+.+. ......+....+..+. .+.. .-+.++....+.. .|++++-... +.-|+.+++.+.
T Consensus 10 ~~~iLivdd~--~~~~~~l~~~L~~~~~--~v~~--~~~~~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~ 83 (140)
T 3c97_A 10 PLSVLIAEDN--DICRLVAAKALEKCTN--DITV--VTNGLQALQAYQNRQFDVIIMDIQMPVMDGLEAVSEIRNYERTH 83 (140)
T ss_dssp CCEEEEECCC--HHHHHHHHHHHTTTCS--EEEE--ESSHHHHHHHHHHSCCSEEEECTTCCSSCHHHHHHHHHHHHHHH
T ss_pred CceEEEEcCC--HHHHHHHHHHHHHcCC--ceEE--ECCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhhhhhc
Confidence 3567777761 2233344444443321 2333 2344555555543 5888876543 345676776664
Q ss_pred --cCCceEE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 506 --YGAVPVV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 506 --~G~pvI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
..+|+|. +........... +..+|+..|.+.++|..+|.+++.
T Consensus 84 ~~~~~~ii~~s~~~~~~~~~~~--------g~~~~l~KP~~~~~L~~~i~~~~~ 129 (140)
T 3c97_A 84 NTKRASIIAITADTIDDDRPGA--------ELDEYVSKPLNPNQLRDVVLTCHS 129 (140)
T ss_dssp TCCCCCCEEEESSCCSCCCCCS--------SCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCCceEEEEEeCccchhHHHhC--------ChhheEeCCCCHHHHHHHHHHHhC
Confidence 2456665 332222222222 568999999999999999998874
No 231
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=39.80 E-value=2.3e+02 Score=26.19 Aligned_cols=109 Identities=9% Similarity=0.022 Sum_probs=67.5
Q ss_pred cCCEEEEEecCCCCc-chHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh---CCEEEEcCC-CCCCchHHHHHHhc--
Q 043397 434 LGGQMILLGNSPVHW-VQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA---ADIVLVPSI-YEPCGLAQMIGMRY-- 506 (596)
Q Consensus 434 ~~~~lvIvG~~~~g~-~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~---aDi~l~PS~-~E~~gl~~lEAma~-- 506 (596)
...+++|+-+ .+ ....+....+..+ ......-+.++....+.. .|++++--. -+.-|+.+++.+..
T Consensus 123 ~~~~ILivDD---~~~~~~~l~~~L~~~~----~~v~~a~~~~eal~~l~~~~~~dlvllD~~mP~~dG~~l~~~lr~~~ 195 (259)
T 3luf_A 123 QQIEVLVVDD---SRTSRHRTMAQLRKQL----LQVHEASHAREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLRERY 195 (259)
T ss_dssp TTCEEEEECS---CHHHHHHHHHHHHTTT----CEEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHHHC
T ss_pred CCCcEEEEeC---CHHHHHHHHHHHHHcC----cEEEEeCCHHHHHHHHhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcc
Confidence 5678888887 32 2333333333322 333445566666666654 377776543 34567777776643
Q ss_pred ---CCceEE-eCCCCcccc---ccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 507 ---GAVPVV-RKTGGLADT---VFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 507 ---G~pvI~-s~~gg~~e~---i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
.+|+|+ |........ +.. |.++|+..|.++++|...|.++++.
T Consensus 196 ~~~~~~ii~~s~~~~~~~~~~a~~~--------Ga~~yl~KP~~~~~L~~~i~~~l~~ 245 (259)
T 3luf_A 196 SKQQLAIIGISVSDKRGLSARYLKQ--------GANDFLNQPFEPEELQCRVSHNLEA 245 (259)
T ss_dssp CTTTSEEEEEECSSSSSHHHHHHHT--------TCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEccCCHHHHHHHHhc--------ChhheEcCCCCHHHHHHHHHHHHHh
Confidence 456665 443332222 333 7899999999999999999998863
No 232
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=39.69 E-value=13 Score=35.36 Aligned_cols=32 Identities=13% Similarity=0.047 Sum_probs=25.0
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
|||+++ ||.+..-..+++.|.++||+|.++..
T Consensus 6 m~ilVt----------GatG~iG~~l~~~L~~~g~~V~~~~r 37 (287)
T 3sc6_A 6 ERVIIT----------GANGQLGKQLQEELNPEEYDIYPFDK 37 (287)
T ss_dssp EEEEEE----------STTSHHHHHHHHHSCTTTEEEEEECT
T ss_pred eEEEEE----------CCCCHHHHHHHHHHHhCCCEEEEecc
Confidence 567765 55566666889999999999999874
No 233
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=39.67 E-value=27 Score=34.44 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=21.4
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||.+..-..++++|.++||+|.++...
T Consensus 34 GatG~iG~~l~~~L~~~g~~V~~~~r~ 60 (352)
T 1sb8_A 34 GVAGFIGSNLLETLLKLDQKVVGLDNF 60 (352)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 555666668899999999999998743
No 234
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Probab=39.63 E-value=23 Score=35.57 Aligned_cols=33 Identities=21% Similarity=0.078 Sum_probs=26.1
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
++|+||+. ||.|-.-..++++|.++||+|.++.
T Consensus 10 ~~~~vlVT----------G~tGfIG~~l~~~L~~~G~~V~~~~ 42 (404)
T 1i24_A 10 HGSRVMVI----------GGDGYCGWATALHLSKKNYEVCIVD 42 (404)
T ss_dssp --CEEEEE----------TTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCeEEEe----------CCCcHHHHHHHHHHHhCCCeEEEEE
Confidence 45677765 7777777889999999999999985
No 235
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=39.57 E-value=65 Score=31.37 Aligned_cols=95 Identities=16% Similarity=0.089 Sum_probs=58.2
Q ss_pred hhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCc-chHHHHHHHHHcCCCCcEE
Q 043397 389 ICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHW-VQKDFEDLANLHNKGTSTR 467 (596)
Q Consensus 389 ~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~-~~~~l~~~~~~~~~~~~V~ 467 (596)
.+--.+++.+|- -+...|+|+|-+....=...++.++.++ +++++.+++.. +. ..+.+.+.+++.|. .+.
T Consensus 137 aDl~Ti~e~~g~---l~glkva~vGD~~~~rva~Sl~~~~~~~--~G~~v~~~~P~--~~~~~~~~~~~~~~~g~--~~~ 207 (306)
T 4ekn_B 137 LDLYTIMREIGR---IDGIKIAFVGDLKYGRTVHSLVYALSLF--ENVEMYFVSPK--ELRLPKDIIEDLKAKNI--KFY 207 (306)
T ss_dssp HHHHHHHHHHSC---STTCEEEEESCTTTCHHHHHHHHHHHTS--SSCEEEEECCG--GGCCCHHHHHHHHHTTC--CEE
T ss_pred HHHHHHHHHhCC---cCCCEEEEEcCCCCCcHHHHHHHHHHhc--CCCEEEEECCc--ccccCHHHHHHHHHcCC--EEE
Confidence 345667778774 4678899999753322245666666554 48899999972 21 23455555666543 354
Q ss_pred EEeccCHHHHHHHHHhCCEEEEcCCC-CCCc
Q 043397 468 ILLMYSEELSHMLYAAADIVLVPSIY-EPCG 497 (596)
Q Consensus 468 ~~g~~~~~~l~~~~a~aDi~l~PS~~-E~~g 497 (596)
..... .+.++.||++...... |.++
T Consensus 208 ~~~d~-----~eav~~aDvvy~~~~q~er~~ 233 (306)
T 4ekn_B 208 EKESL-----DDLDDDIDVLYVTRIQKERFP 233 (306)
T ss_dssp EESCG-----GGCCTTCSEEEECCCCGGGCC
T ss_pred EEcCH-----HHHhcCCCEEEeCCcccccCC
Confidence 44332 3467899998876543 4443
No 236
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=39.56 E-value=1.5e+02 Score=23.83 Aligned_cols=108 Identities=8% Similarity=-0.018 Sum_probs=62.0
Q ss_pred cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh---CCEEEEcCCC-CCCchHHHHHHhc---
Q 043397 434 LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA---ADIVLVPSIY-EPCGLAQMIGMRY--- 506 (596)
Q Consensus 434 ~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~---aDi~l~PS~~-E~~gl~~lEAma~--- 506 (596)
+..+++|+.+. ......+....++.|. .| ...-+.++....+.. .|++++-... +.-|+.+++.+..
T Consensus 14 ~~~~ilivdd~--~~~~~~l~~~L~~~g~--~v--~~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~ 87 (138)
T 2b4a_A 14 QPFRVTLVEDE--PSHATLIQYHLNQLGA--EV--TVHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTK 87 (138)
T ss_dssp CCCEEEEECSC--HHHHHHHHHHHHHTTC--EE--EEESSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSS
T ss_pred CCCeEEEECCC--HHHHHHHHHHHHHcCC--EE--EEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCC
Confidence 34566777651 2334445555554432 23 333344445555543 6888775543 3456777777653
Q ss_pred CCceEE-e-CCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 507 GAVPVV-R-KTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 507 G~pvI~-s-~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
.+|+|. + ....... ..- -..+++..|.+.++|...|.+++.
T Consensus 88 ~~~ii~ls~~~~~~~~-~~~--------~~~~~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 88 QPSVLILTTGRHELIE-SSE--------HNLSYLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp CCEEEEEESCC--CCC-CSS--------SCEEEEESSCCHHHHHHHHHHTCC
T ss_pred CCCEEEEECCCCCHHH-HHH--------HHHheeeCCCCHHHHHHHHHHHHH
Confidence 566666 4 4333322 221 157899999999999999988765
No 237
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Probab=39.39 E-value=26 Score=34.37 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=25.3
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
+|+|+++ ||.+..-..++++|.++||+|.++..
T Consensus 27 ~~~vlVt----------GatG~iG~~l~~~L~~~g~~V~~~~r 59 (343)
T 2b69_A 27 RKRILIT----------GGAGFVGSHLTDKLMMDGHEVTVVDN 59 (343)
T ss_dssp CCEEEEE----------TTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEE----------cCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 4667655 55566666889999999999999874
No 238
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Probab=39.13 E-value=26 Score=33.86 Aligned_cols=26 Identities=23% Similarity=-0.070 Sum_probs=20.9
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+..-..++++|.++||+|.++..
T Consensus 19 GatG~iG~~l~~~L~~~G~~V~~~~r 44 (321)
T 2pk3_A 19 GVAGFVGKYLANHLTEQNVEVFGTSR 44 (321)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEec
Confidence 55566666889999999999999863
No 239
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=39.11 E-value=27 Score=31.73 Aligned_cols=39 Identities=10% Similarity=-0.039 Sum_probs=26.9
Q ss_pred ceeEEEEeecccccccccC-HHHHHhHHHHHHHhc--CCeEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGG-LGDVVTGLARACLSR--GHTVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG-~~~~~~~La~aL~~~--Gh~V~vi~ 149 (596)
+||||+|.....+ .+| ....+..+++.+.+. |++|.++-
T Consensus 1 MmkiLii~gSpr~---~~s~t~~l~~~~~~~~~~~~~g~~v~~~d 42 (212)
T 3r6w_A 1 MSRILAVHASPRG---ERSQSRRLAEVFLAAYREAHPQARVARRE 42 (212)
T ss_dssp CCCEEEEECCSCS---TTCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred CCEEEEEEeCCCC---CCCHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 5899999755321 133 355666677778777 99999885
No 240
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=39.09 E-value=1.6e+02 Score=24.25 Aligned_cols=32 Identities=9% Similarity=0.050 Sum_probs=22.7
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEE
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIM 148 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi 148 (596)
+++||+++... ......+.+.|.+.|++|..+
T Consensus 6 ~~~~ILivdd~----------~~~~~~l~~~L~~~g~~v~~~ 37 (154)
T 3gt7_A 6 RAGEILIVEDS----------PTQAEHLKHILEETGYQTEHV 37 (154)
T ss_dssp -CCEEEEECSC----------HHHHHHHHHHHHTTTCEEEEE
T ss_pred CCCcEEEEeCC----------HHHHHHHHHHHHHCCCEEEEe
Confidence 46899998532 455667888888889988655
No 241
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=38.50 E-value=24 Score=35.09 Aligned_cols=27 Identities=22% Similarity=-0.004 Sum_probs=21.8
Q ss_pred cCHHHHHhHHHHHHHhc-CCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSR-GHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~-Gh~V~vi~p~ 151 (596)
||.+..-..++++|.++ ||+|.++...
T Consensus 31 GatG~iG~~l~~~L~~~~g~~V~~~~r~ 58 (372)
T 3slg_A 31 GVNGFIGHHLSKRILETTDWEVFGMDMQ 58 (372)
T ss_dssp SCSSHHHHHHHHHHHHHSSCEEEEEESC
T ss_pred CCCChHHHHHHHHHHhCCCCEEEEEeCC
Confidence 66666667889999998 9999999854
No 242
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=38.49 E-value=1.4e+02 Score=23.24 Aligned_cols=110 Identities=8% Similarity=-0.012 Sum_probs=62.4
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--hCCEEEEcCCC--CCCchHHHHHHh-----c
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--AADIVLVPSIY--EPCGLAQMIGMR-----Y 506 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~aDi~l~PS~~--E~~gl~~lEAma-----~ 506 (596)
.+++|+.+. ......+....++.|. +|. ..-+.++....+. ..|++++-... ..-|+.+++.+. .
T Consensus 6 ~~ilivdd~--~~~~~~l~~~L~~~g~--~v~--~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~ 79 (127)
T 2gkg_A 6 KKILIVESD--TALSATLRSALEGRGF--TVD--ETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLK 79 (127)
T ss_dssp CEEEEECSC--HHHHHHHHHHHHHHTC--EEE--EECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTT
T ss_pred CeEEEEeCC--HHHHHHHHHHHHhcCc--eEE--EecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCcccc
Confidence 356666651 3334455555555443 233 3334444444443 35777765432 345666666664 3
Q ss_pred CCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 507 GAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 507 G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
.+|+|+. ...-.+..... ...|..+++..|.+.++|...|.+++.
T Consensus 80 ~~~ii~~-~~~~~~~~~~~----~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 80 NVPIVII-GNPDGFAQHRK----LKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp TSCEEEE-ECGGGHHHHHH----STTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCCEEEE-ecCCchhHHHH----HHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 5777776 32222221110 112678999999999999999998875
No 243
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=38.34 E-value=29 Score=33.83 Aligned_cols=27 Identities=30% Similarity=0.301 Sum_probs=20.7
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||.+-.-..+++.|.++||+|.++...
T Consensus 12 GatG~iG~~l~~~L~~~G~~V~~~~r~ 38 (341)
T 3enk_A 12 GGAGYIGSHTAVELLAHGYDVVIADNL 38 (341)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCcHHHHHHHHHHHHCCCcEEEEecC
Confidence 444555568899999999999998743
No 244
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=38.31 E-value=38 Score=28.63 Aligned_cols=39 Identities=8% Similarity=0.037 Sum_probs=28.8
Q ss_pred ce-eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 108 LM-HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 108 ~m-kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
.| |++|+... +|+ ..-..+-+.+++.++.+.||+|.|+.
T Consensus 4 ~Mkk~~ivv~~-~P~--g~~~~~~al~~a~a~~a~~~~v~Vff 43 (136)
T 2hy5_B 4 VVKKFMYLNRK-APY--GTIYAWEALEVVLIGAAFDQDVCVLF 43 (136)
T ss_dssp -CCEEEEEECS-CTT--TSSHHHHHHHHHHHHGGGCCEEEEEE
T ss_pred chhEEEEEEeC-CCC--CcHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 37 58888754 453 23356777889999999999999887
No 245
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=38.30 E-value=1.4e+02 Score=23.30 Aligned_cols=107 Identities=11% Similarity=0.094 Sum_probs=61.5
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHh---cCCc
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMR---YGAV 509 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma---~G~p 509 (596)
.+++|+.+. ......++...+..+. .| ...-+.++....+. ..|++++-... ..-|+.+++.+. ..+|
T Consensus 4 ~~ilivdd~--~~~~~~l~~~l~~~~~--~v--~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ 77 (124)
T 1srr_A 4 EKILIVDDQ--SGIRILLNEVFNKEGY--QT--FQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIR 77 (124)
T ss_dssp CEEEEECSC--HHHHHHHHHHHHTTTC--EE--EEESSHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCE
T ss_pred ceEEEEeCC--HHHHHHHHHHHHHCCc--EE--EEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCC
Confidence 456777761 2233445555544332 23 33344444544443 46888875443 334666666554 3667
Q ss_pred eEE-eCCCCcc---ccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 510 PVV-RKTGGLA---DTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 510 vI~-s~~gg~~---e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
+|. +...... +.... |..+++..|.+.++|..+|++++.
T Consensus 78 ii~~s~~~~~~~~~~~~~~--------g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 78 VIIMTAYGELDMIQESKEL--------GALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp EEEEESSCCHHHHHHHHHH--------TCCCEEESSCCHHHHHHHHHHHSC
T ss_pred EEEEEccCchHHHHHHHhc--------ChHhhccCCCCHHHHHHHHHHHhc
Confidence 766 4433322 22333 678999999999999999988764
No 246
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=38.20 E-value=59 Score=30.52 Aligned_cols=41 Identities=10% Similarity=0.022 Sum_probs=29.2
Q ss_pred CCCceeEEEEeecccccccccCH-HHHHhHHHHHHHhcCCeEEEEe
Q 043397 105 DSNLMHIIHITAEMAPIAKVGGL-GDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 105 ~~~~mkIl~is~~~~P~~~~GG~-~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
...+|||++|+.... .+|. ...+..+++.+.+.|++|.++-
T Consensus 31 ~~~~mkIliI~GS~r----~~s~t~~La~~~~~~l~~~g~eve~id 72 (247)
T 2q62_A 31 STHRPRILILYGSLR----TVSYSRLLAEEARRLLEFFGAEVKVFD 72 (247)
T ss_dssp CCSCCEEEEEECCCC----SSCHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred cCCCCeEEEEEccCC----CCCHHHHHHHHHHHHHhhCCCEEEEEE
Confidence 445789999986543 3454 4556667788888899999874
No 247
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=38.11 E-value=32 Score=32.09 Aligned_cols=39 Identities=10% Similarity=0.011 Sum_probs=28.5
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhc-CCeEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSR-GHTVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~-Gh~V~vi~ 149 (596)
+|||++|..... ..|-...++..+++.+.+. |++|.++-
T Consensus 1 MmkIliI~gS~r---~~s~T~~la~~i~~~l~~~~g~~v~~~d 40 (242)
T 1sqs_A 1 MNKIFIYAGVRN---HNSKTLEYTKRLSSIISSRNNVDISFRT 40 (242)
T ss_dssp CCEEEEEECCCC---TTCHHHHHHHHHHHHHHHHSCCEEEEEC
T ss_pred CCeEEEEECCCC---CCChHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 479999975432 1244566777788888888 99999885
No 248
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*
Probab=38.07 E-value=27 Score=34.16 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=19.8
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
||.+..-..++++|.++||+|.++.
T Consensus 7 GatG~iG~~l~~~L~~~G~~V~~~~ 31 (338)
T 1udb_A 7 GGSGYIGSHTCVQLLQNGHDVIILD 31 (338)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 5555555678999999999999875
No 249
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=38.02 E-value=1.5e+02 Score=26.86 Aligned_cols=29 Identities=10% Similarity=-0.088 Sum_probs=17.0
Q ss_pred HHHHHHHHhhCCCCcEEEEcCCccchHHHHH
Q 043397 223 RACLEWMQVTGVQPDIIHVHEWQIGALPLLY 253 (596)
Q Consensus 223 ~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~ 253 (596)
..+.+.++. .+||+|.+-.|..-+-+.++
T Consensus 69 ~~~~~~l~~--~~~Dliv~a~y~~il~~~~l 97 (209)
T 1meo_A 69 SAIDLVLEE--FSIDIVCLAGFMRILSGPFV 97 (209)
T ss_dssp HHHHHHHHH--TTCCEEEEESCCSCCCHHHH
T ss_pred HHHHHHHHh--cCCCEEEEcchhhhCCHHHH
Confidence 344455544 68999998766544333333
No 250
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=38.00 E-value=17 Score=32.86 Aligned_cols=37 Identities=11% Similarity=0.057 Sum_probs=27.2
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
+||||+|...-. .++ +.+...+++++.+.|++|.++-
T Consensus 1 MmkiLiI~gsp~----~~~-s~l~~~l~~~~~~~g~ev~~~d 37 (192)
T 3f2v_A 1 MPKTLIILAHPN----ISQ-STVHKHWSDAVRQHTDRFTVHE 37 (192)
T ss_dssp -CCEEEEECCTT----GGG-CSHHHHHHHHHTTCTTTEEEEE
T ss_pred CCEEEEEEeCCC----ccH-HHHHHHHHHHHHhCCCeEEEEE
Confidence 589999975432 232 4678888888888899999885
No 251
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=38.00 E-value=35 Score=30.31 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=30.1
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHh-cCCeEEEEe
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLS-RGHTVDIML 149 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~-~Gh~V~vi~ 149 (596)
.+|||+++... + .|....++..+++.+.+ .|++|.++-
T Consensus 3 ~M~kiliiy~S--~---~GnT~~~a~~i~~~l~~~~g~~v~~~~ 41 (188)
T 2ark_A 3 AMGKVLVIYDT--R---TGNTKKMAELVAEGARSLEGTEVRLKH 41 (188)
T ss_dssp CCEEEEEEECC--S---SSHHHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred CCCEEEEEEEC--C---CcHHHHHHHHHHHHHhhcCCCeEEEEE
Confidence 35799998543 2 47778888999999998 899998885
No 252
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=37.75 E-value=27 Score=33.69 Aligned_cols=25 Identities=8% Similarity=-0.055 Sum_probs=20.3
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
||.+..-..++++|.++||+|.++.
T Consensus 9 GatG~iG~~l~~~L~~~g~~V~~~~ 33 (315)
T 2ydy_A 9 GATGLLGRAVHKEFQQNNWHAVGCG 33 (315)
T ss_dssp TTTSHHHHHHHHHHHTTTCEEEEEC
T ss_pred CCCcHHHHHHHHHHHhCCCeEEEEc
Confidence 5555566688999999999999886
No 253
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=37.71 E-value=26 Score=33.04 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=25.9
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
|||+.|+ . - ..-|=.+.+.+||.+|+++|++|.++=
T Consensus 1 M~vI~vs-~-K---GGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 1 MRQVAIY-G-K---GGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp CEEEEEE-E-C---TTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CcEEEEe-c-C---CCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 6766664 1 1 112445778899999999999999885
No 254
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=37.54 E-value=25 Score=34.64 Aligned_cols=34 Identities=18% Similarity=0.083 Sum_probs=25.7
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+|+|+++ ||.|..-..++++|.+.||+|.+++..
T Consensus 10 ~~~IlVt----------GatG~iG~~l~~~L~~~g~~V~~l~R~ 43 (346)
T 3i6i_A 10 KGRVLIA----------GATGFIGQFVATASLDAHRPTYILARP 43 (346)
T ss_dssp -CCEEEE----------CTTSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred CCeEEEE----------CCCcHHHHHHHHHHHHCCCCEEEEECC
Confidence 3677776 555555567899999999999999854
No 255
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=37.39 E-value=32 Score=28.81 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=26.6
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFY 152 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~ 152 (596)
+.+|+++ | .+.+-..+++.|.+.||+|.++....
T Consensus 7 ~~~viIi----------G-~G~~G~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 7 CNHALLV----------G-YGRVGSLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp CSCEEEE----------C-CSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEE----------C-cCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 3578877 2 26777789999999999999998543
No 256
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=37.38 E-value=28 Score=31.72 Aligned_cols=35 Identities=14% Similarity=0.049 Sum_probs=27.5
Q ss_pred eeEEEEeecccccccccCHHHH--HhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDV--VTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~--~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+||++- -+|+.+.+ +..+.+.|.+.|++|+++.+.
T Consensus 8 k~I~lg--------iTGs~aa~~k~~~ll~~L~~~g~eV~vv~T~ 44 (201)
T 3lqk_A 8 KHVGFG--------LTGSHCTYHEVLPQMERLVELGAKVTPFVTH 44 (201)
T ss_dssp CEEEEE--------CCSCGGGGGGTHHHHHHHHHTTCEEEEECSS
T ss_pred CEEEEE--------EEChHHHHHHHHHHHHHHhhCCCEEEEEECh
Confidence 477765 34666666 889999999999999998743
No 257
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=37.34 E-value=2.1e+02 Score=24.98 Aligned_cols=108 Identities=12% Similarity=0.081 Sum_probs=59.2
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEE-eccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHhc--CCc
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRIL-LMYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMRY--GAV 509 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~-g~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma~--G~p 509 (596)
.+++|+.+. ......+.......| .... ..-+.++....+. ..|++++-... +.-|+.+++.+.. ..|
T Consensus 14 ~~iLivdd~--~~~~~~l~~~L~~~g----~~v~~~~~~~~~al~~~~~~~~dlvi~D~~~p~~~g~~~~~~l~~~~~~p 87 (205)
T 1s8n_A 14 RRVLIAEDE--ALIRMDLAEMLREEG----YEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASKRIAP 87 (205)
T ss_dssp CEEEEECSS--HHHHHHHHHHHHHTT----CEEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCSC
T ss_pred ccEEEEECC--HHHHHHHHHHHHHCC----CEEEEEeCCHHHHHHHHhhcCCCEEEEeCCCCCCChHHHHHHHHhcCCCC
Confidence 466666651 223334444444432 2222 2233333444443 35777765443 3456666665542 346
Q ss_pred eEE-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 510 PVV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 510 vI~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
+|. +..... .+.+.. |..+|+..|.+.++|...|..++..
T Consensus 88 ii~lt~~~~~~~~~~~~~~--------ga~~~l~KP~~~~~L~~~i~~~~~~ 131 (205)
T 1s8n_A 88 IVVLTAFSQRDLVERARDA--------GAMAYLVKPFSISDLIPAIELAVSR 131 (205)
T ss_dssp EEEEEEGGGHHHHHTTGGG--------SCEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHhc--------CCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 665 333332 223333 6789999999999999999988863
No 258
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=37.29 E-value=1.1e+02 Score=30.13 Aligned_cols=95 Identities=15% Similarity=0.047 Sum_probs=55.7
Q ss_pred ccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--h
Q 043397 406 VPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--A 483 (596)
Q Consensus 406 ~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~ 483 (596)
...++.+|-=.- | ..+++++... ++++++.+-+ ...+..++++++++....+... ++ +.++++ .
T Consensus 6 ~~~vgiiG~G~i--g-~~~~~~l~~~--~~~~lv~v~d----~~~~~~~~~a~~~~~~~~~~~~---~~--~~~ll~~~~ 71 (362)
T 1ydw_A 6 QIRIGVMGCADI--A-RKVSRAIHLA--PNATISGVAS----RSLEKAKAFATANNYPESTKIH---GS--YESLLEDPE 71 (362)
T ss_dssp CEEEEEESCCTT--H-HHHHHHHHHC--TTEEEEEEEC----SSHHHHHHHHHHTTCCTTCEEE---SS--HHHHHHCTT
T ss_pred ceEEEEECchHH--H-HHHHHHHhhC--CCcEEEEEEc----CCHHHHHHHHHHhCCCCCCeee---CC--HHHHhcCCC
Confidence 455677764111 1 2345555432 5677765555 2345667778887753223322 22 445666 5
Q ss_pred CCEEEEcCCCCCCchHHHHHHhcCCceEEeC
Q 043397 484 ADIVLVPSIYEPCGLAQMIGMRYGAVPVVRK 514 (596)
Q Consensus 484 aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~ 514 (596)
+|++++.+....-.-.+.+|+..|++|++-+
T Consensus 72 ~D~V~i~tp~~~h~~~~~~al~aGk~V~~EK 102 (362)
T 1ydw_A 72 IDALYVPLPTSLHVEWAIKAAEKGKHILLEK 102 (362)
T ss_dssp CCEEEECCCGGGHHHHHHHHHTTTCEEEECS
T ss_pred CCEEEEcCChHHHHHHHHHHHHCCCeEEEec
Confidence 8999987755443445678899999988844
No 259
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=37.05 E-value=20 Score=34.66 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=24.3
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+|+|+++ ||.+..-..++++|.++||+|.+++..
T Consensus 4 ~~~ilVt----------GatG~iG~~l~~~L~~~g~~V~~~~R~ 37 (313)
T 1qyd_A 4 KSRVLIV----------GGTGYIGKRIVNASISLGHPTYVLFRP 37 (313)
T ss_dssp CCCEEEE----------STTSTTHHHHHHHHHHTTCCEEEECCS
T ss_pred CCEEEEE----------cCCcHHHHHHHHHHHhCCCcEEEEECC
Confidence 4677766 333444447788899999999998854
No 260
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=37.05 E-value=28 Score=32.69 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=26.5
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+||+++|| ||.+-.-..+++.|+++|++|.++...
T Consensus 6 ~~k~vlVT---------Gas~gIG~~~a~~l~~~G~~v~~~~~~ 40 (264)
T 3i4f_A 6 FVRHALIT---------AGTKGLGKQVTEKLLAKGYSVTVTYHS 40 (264)
T ss_dssp CCCEEEET---------TTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred ccCEEEEe---------CCCchhHHHHHHHHHHCCCEEEEEcCC
Confidence 47878776 554555568999999999999988643
No 261
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=36.90 E-value=34 Score=31.73 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=27.4
Q ss_pred eeEEEEeecccccccccC-HHHHHhHHHHHHHhcCCeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGG-LGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG-~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
||||+|...- +.++ ...++...++.+.+.||+|.++-
T Consensus 2 mkiLiI~gsp----r~~S~t~~l~~~~~~~l~~~g~ev~~~d 39 (228)
T 3tem_A 2 KKVLIVYAHQ----EPKSFNGSLKNVAVDELSRQGCTVTVSD 39 (228)
T ss_dssp CEEEEEECCS----CTTSHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CEEEEEEeCC----CCCCHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 8999997654 3344 35566667788888899999986
No 262
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=36.89 E-value=48 Score=31.26 Aligned_cols=41 Identities=27% Similarity=0.251 Sum_probs=33.1
Q ss_pred CCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 106 SNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 106 ~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
.+.||.++|+..- ..-|=..++..|+++|.++|++|..+=|
T Consensus 23 ~~~m~~i~Itgt~----t~vGKT~vt~gL~~~l~~~G~~V~~fKP 63 (251)
T 3fgn_A 23 QSHMTILVVTGTG----TGVGKTVVCAALASAARQAGIDVAVCKP 63 (251)
T ss_dssp CSSCEEEEEEESS----TTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCCEEEEEeCC----CCCcHHHHHHHHHHHHHHCCCeEEEEee
Confidence 3568999998655 2357778889999999999999998865
No 263
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=36.74 E-value=18 Score=34.75 Aligned_cols=34 Identities=15% Similarity=0.266 Sum_probs=23.6
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+|+|+++. ..|++| ..++++|.++||+|.+++..
T Consensus 2 ~~~vlVtG-------atG~iG---~~l~~~L~~~g~~V~~~~R~ 35 (307)
T 2gas_A 2 ENKILILG-------PTGAIG---RHIVWASIKAGNPTYALVRK 35 (307)
T ss_dssp CCCEEEES-------TTSTTH---HHHHHHHHHHTCCEEEEECC
T ss_pred CcEEEEEC-------CCchHH---HHHHHHHHhCCCcEEEEECC
Confidence 35676652 234444 47788899999999998754
No 264
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=36.52 E-value=90 Score=30.74 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=31.7
Q ss_pred HHHHHHhCCEEEE--cCCCCCCc---hHHHHHHhcCCceEEeCCCCcc
Q 043397 477 SHMLYAAADIVLV--PSIYEPCG---LAQMIGMRYGAVPVVRKTGGLA 519 (596)
Q Consensus 477 l~~~~a~aDi~l~--PS~~E~~g---l~~lEAma~G~pvI~s~~gg~~ 519 (596)
+.++++.||++++ |...|+.+ -..+..|--|.-.|-+..|++-
T Consensus 188 l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iV 235 (334)
T 3kb6_A 188 LDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVV 235 (334)
T ss_dssp HHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGB
T ss_pred HHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccc
Confidence 5678999999875 55556655 4678888888777778888743
No 265
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=36.39 E-value=3e+02 Score=27.80 Aligned_cols=106 Identities=13% Similarity=0.102 Sum_probs=62.6
Q ss_pred EEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHhc-----CC
Q 043397 437 QMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMRY-----GA 508 (596)
Q Consensus 437 ~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma~-----G~ 508 (596)
+++|+-+. ......+....+..+. .....-+.++....+. ..|++++-... +.-|+-+++.+.. .+
T Consensus 3 ~iLivdD~--~~~~~~l~~~L~~~~~----~v~~a~~~~~al~~~~~~~~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~ 76 (459)
T 1w25_A 3 RILVVDDI--EANVRLLEAKLTAEYY----EVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHI 76 (459)
T ss_dssp EEEEECSS--TTHHHHHHHHHHHTTC----EEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTS
T ss_pred eEEEEeCC--HHHHHHHHHHHHHcCC----EEEEECCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHhcCcccCCC
Confidence 45566651 3334445555544332 2223344444545443 35887765433 3456777776653 46
Q ss_pred ceEE-eCCCCcc---ccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 509 VPVV-RKTGGLA---DTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 509 pvI~-s~~gg~~---e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
|+|. |..+... +.+.. |..+|+..|.+.++|...|.+++.
T Consensus 77 pii~lt~~~~~~~~~~a~~~--------Ga~~~l~KP~~~~~l~~~i~~~~~ 120 (459)
T 1w25_A 77 PVVLITALDGRGDRIQGLES--------GASDFLTKPIDDVMLFARVRSLTR 120 (459)
T ss_dssp CEEEEECSSCHHHHHHHHHH--------TCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHc--------CCCEEEeCCCCHHHHHHHHHHHHH
Confidence 7776 4444432 22333 678999999999999999999886
No 266
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=36.36 E-value=2.8e+02 Score=26.18 Aligned_cols=117 Identities=9% Similarity=0.138 Sum_probs=67.7
Q ss_pred HHHHHHH-cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEE-eccCHHHHHHHHHh--CCEEEEcCCC--CCCchH-
Q 043397 427 AIKRAEE-LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRIL-LMYSEELSHMLYAA--ADIVLVPSIY--EPCGLA- 499 (596)
Q Consensus 427 A~~~l~~-~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~-g~~~~~~l~~~~a~--aDi~l~PS~~--E~~gl~- 499 (596)
+...+.. ...+++++-+. ......+....++.| ..+. -.-+.++....++. .|++++--.- +.-|+.
T Consensus 151 A~~~Lr~~l~~rILvVdD~--~~~~~~l~~~L~~~g----~~v~~~a~~g~eAl~~~~~~~~dlvl~D~~MPd~mdG~e~ 224 (286)
T 3n0r_A 151 AQAEIDAELATEVLIIEDE--PVIAADIEALVRELG----HDVTDIAATRGEALEAVTRRTPGLVLADIQLADGSSGIDA 224 (286)
T ss_dssp HHHHHHTSCCCEEEEECCS--HHHHHHHHHHHHHTT----CEEEEEESSHHHHHHHHHHCCCSEEEEESCCTTSCCTTTT
T ss_pred HHhhhhccCCCcEEEEcCC--HHHHHHHHHHhhccC----ceEEEEeCCHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHH
Confidence 3344433 24567777761 334455555565544 3444 34555666666654 5888764322 122332
Q ss_pred --HHHHHhcCCceEE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 500 --QMIGMRYGAVPVV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 500 --~lEAma~G~pvI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
.+-... .+|+|+ |..+. +...- ...|.++|+..|.++++|...|.+++..
T Consensus 225 ~~~ir~~~-~~piI~lT~~~~--~~~~~-----~~~G~~~~l~KP~~~~~L~~~i~~~l~~ 277 (286)
T 3n0r_A 225 VKDILGRM-DVPVIFITAFPE--RLLTG-----ERPEPTFLITKPFQPETVKAAIGQALFF 277 (286)
T ss_dssp THHHHHHT-TCCEEEEESCGG--GGCCS-----SSCCCSSEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCEEEEeCCHH--HHHHH-----HhCCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 233334 889888 44332 11111 1227889999999999999999999974
No 267
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=36.34 E-value=2.7e+02 Score=27.73 Aligned_cols=109 Identities=11% Similarity=0.159 Sum_probs=62.4
Q ss_pred EEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHh---cCCce
Q 043397 437 QMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMR---YGAVP 510 (596)
Q Consensus 437 ~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma---~G~pv 510 (596)
+++|+.+ +......+....+..+. .....-+.++....+.. .|++++-... +.-|+.+++.+. ..+|+
T Consensus 2 ~ILIVDD--d~~~~~~l~~~L~~~g~----~v~~a~~~~eal~~l~~~~~DlvllD~~mp~~dG~ell~~lr~~~~~~pv 75 (387)
T 1ny5_A 2 NVLVIED--DKVFRGLLEEYLSMKGI----KVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEV 75 (387)
T ss_dssp EEEEECC--CHHHHHHHHHHHHHHTC----EEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEE
T ss_pred EEEEEEC--CHHHHHHHHHHHHHCCC----EEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcE
Confidence 3555555 12333444444444332 22334455555555543 5777765432 445666666654 35666
Q ss_pred EE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 511 VV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 511 I~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
|. |..+.....+.-.. .|..+|+..|.+.++|...|.+++.
T Consensus 76 IvlT~~~~~~~~~~a~~-----~Ga~dyl~KP~~~~~L~~~i~~~l~ 117 (387)
T 1ny5_A 76 IVITGHGTIKTAVEAMK-----MGAYDFLTKPCMLEEIELTINKAIE 117 (387)
T ss_dssp EEEEETTCHHHHHHHHT-----TTCCEEEEESCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHh-----cCceEEecCCCCHHHHHHHHHHHHH
Confidence 66 44444333322211 1678999999999999999999986
No 268
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=36.14 E-value=41 Score=29.90 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=28.6
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
|||+.|+..- ..-|-.+.+.+||.+|+++|++|.++-..
T Consensus 1 M~vi~v~s~k----gG~GKTt~a~~la~~la~~g~~vlliD~D 39 (206)
T 4dzz_A 1 MKVISFLNPK----GGSGKTTAVINIATALSRSGYNIAVVDTD 39 (206)
T ss_dssp CEEEEECCSS----TTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEEeCC----CCccHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 7777775422 12355678889999999999999998644
No 269
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=36.02 E-value=29 Score=31.77 Aligned_cols=35 Identities=14% Similarity=0.086 Sum_probs=27.3
Q ss_pred eeEEEEeecccccccccCHHHH--HhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDV--VTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~--~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+||++. -+||...+ +..+.+.|.+.|++|.++.+.
T Consensus 6 k~Illg--------iTGsiaayk~~~~ll~~L~~~g~eV~vv~T~ 42 (207)
T 3mcu_A 6 KRIGFG--------FTGSHCTYEEVMPHLEKLIAEGAEVRPVVSY 42 (207)
T ss_dssp CEEEEE--------ECSCGGGGTTSHHHHHHHHHTTCEEEEEECC
T ss_pred CEEEEE--------EEChHHHHHHHHHHHHHHHhCCCEEEEEEeh
Confidence 477765 24676777 789999999999999988743
No 270
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Probab=36.02 E-value=33 Score=33.83 Aligned_cols=33 Identities=18% Similarity=-0.063 Sum_probs=25.3
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
|+|++. ||.+..-..++++|.++||+|.++...
T Consensus 10 ~~vlVt----------GatG~iG~~l~~~L~~~g~~V~~~~r~ 42 (357)
T 1rkx_A 10 KRVFVT----------GHTGFKGGWLSLWLQTMGATVKGYSLT 42 (357)
T ss_dssp CEEEEE----------TTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEE----------CCCchHHHHHHHHHHhCCCeEEEEeCC
Confidence 677655 555666668899999999999998743
No 271
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=35.81 E-value=31 Score=32.65 Aligned_cols=40 Identities=18% Similarity=0.085 Sum_probs=28.5
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccch
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECI 155 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~ 155 (596)
.||||+....- =.+.-+..|+++|.+.| +|.|++|..++.
T Consensus 1 ~M~ILlTNDDG-------i~apGi~aL~~~L~~~g-~V~VVAP~~~~S 40 (254)
T 2v4n_A 1 SMRILLSNDDG-------VHAPGIQTLAKALREFA-DVQVVAPDRNRS 40 (254)
T ss_dssp CCEEEEECSSC-------TTCHHHHHHHHHHTTTS-EEEEEEESSCCT
T ss_pred CCeEEEEcCCC-------CCCHHHHHHHHHHHhCC-cEEEEeeCCCCc
Confidence 48988775332 22456678889998876 999999876543
No 272
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=35.72 E-value=21 Score=34.30 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=24.0
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+|+|+++ ||.+..-..++++|.++||+|.+++..
T Consensus 4 ~~~ilVt----------GatG~iG~~l~~~L~~~g~~V~~l~R~ 37 (308)
T 1qyc_A 4 RSRILLI----------GATGYIGRHVAKASLDLGHPTFLLVRE 37 (308)
T ss_dssp CCCEEEE----------STTSTTHHHHHHHHHHTTCCEEEECCC
T ss_pred CCEEEEE----------cCCcHHHHHHHHHHHhCCCCEEEEECC
Confidence 4577766 333444447888999999999998754
No 273
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=35.55 E-value=32 Score=33.54 Aligned_cols=27 Identities=26% Similarity=0.036 Sum_probs=21.2
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||.+-.-..+++.|.++||+|.++...
T Consensus 10 GatG~iG~~l~~~L~~~G~~V~~~~r~ 36 (345)
T 2z1m_A 10 GIRGQDGAYLAKLLLEKGYEVYGADRR 36 (345)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEECC
Confidence 555555568899999999999998743
No 274
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=35.48 E-value=41 Score=32.12 Aligned_cols=38 Identities=13% Similarity=-0.047 Sum_probs=26.7
Q ss_pred ceeEEEEeecccccccccCH-HHHHhHHHHHHHhcCCeEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGGL-GDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~-~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
+||||+|.... ..+|. ..++..+++.+.+.||+|.++-
T Consensus 2 MmkiLiI~gSp----r~~s~t~~la~~~~~~l~~~g~eV~~~d 40 (273)
T 1d4a_A 2 GRRALIVLAHS----ERTSFNYAMKEAAAAALKKKGWEVVESD 40 (273)
T ss_dssp CCEEEEEECCS----CTTSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEEeCC----CCccHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 68999997543 22443 4455556777888899999885
No 275
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=35.44 E-value=31 Score=32.43 Aligned_cols=39 Identities=23% Similarity=0.096 Sum_probs=28.2
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccch
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECI 155 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~ 155 (596)
||||+....- =.+.-+..|+++|.+.| +|+|++|..++.
T Consensus 1 M~ILlTNDDG-------i~apGi~aL~~~l~~~g-~V~VVAP~~~~S 39 (244)
T 2e6c_A 1 MRILVTNDDG-------IYSPGLWALAEAASQFG-EVFVAAPDTEQS 39 (244)
T ss_dssp CEEEEECSSC-------TTCHHHHHHHHHHTTTS-EEEEEEECSSCC
T ss_pred CeEEEEcCCC-------CCcHhHHHHHHHHHhCC-CEEEEecCCCCc
Confidence 7888765332 22456778999998888 999999875543
No 276
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=34.96 E-value=1.5e+02 Score=29.11 Aligned_cols=105 Identities=13% Similarity=0.049 Sum_probs=0.0
Q ss_pred eeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHHcCCE
Q 043397 358 ILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQ 437 (596)
Q Consensus 358 I~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~ 437 (596)
|-||-| +...|. .-..+--.+++.+|- -+...|+|+|-+ ..=...++.++..+ +++
T Consensus 128 VINag~-~~~HPt---------------QaLaDl~Ti~e~~g~---l~glkva~vGD~--~rva~Sl~~~~~~~---G~~ 183 (323)
T 3gd5_A 128 VINALT-DHEHPC---------------QVVADLLTIRENFGR---LAGLKLAYVGDG--NNVAHSLLLGCAKV---GMS 183 (323)
T ss_dssp EEEEEC-SSCCHH---------------HHHHHHHHHHHHHSC---CTTCEEEEESCC--CHHHHHHHHHHHHH---TCE
T ss_pred EEeCCC-CCCCcH---------------HHHHHHHHHHHHhCC---CCCCEEEEECCC--CcHHHHHHHHHHHc---CCE
Q ss_pred EEEEecC---CCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCC
Q 043397 438 MILLGNS---PVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIY 493 (596)
Q Consensus 438 lvIvG~~---~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~ 493 (596)
+.+++.. .+....+..++.+++.|.. +.+.....+ .++.||++......
T Consensus 184 v~~~~P~~~~~~~~~~~~~~~~a~~~g~~--v~~~~d~~e-----av~~aDvvyt~~wq 235 (323)
T 3gd5_A 184 IAVATPEGFTPDPAVSARASEIAGRTGAE--VQILRDPFE-----AARGAHILYTDVWT 235 (323)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHHHHHTCC--EEEESCHHH-----HHTTCSEEEECCCC
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHcCCe--EEEECCHHH-----HhcCCCEEEEecee
No 277
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=34.73 E-value=1.6e+02 Score=23.01 Aligned_cols=107 Identities=15% Similarity=0.090 Sum_probs=65.4
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCC-CCCCchHHHHHHhc-----C
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSI-YEPCGLAQMIGMRY-----G 507 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~-~E~~gl~~lEAma~-----G 507 (596)
.+++|+.+. ......++...++.|. .+...-+.++....+.. .|++++-.. .+.-|+.+++.+.. .
T Consensus 4 ~~ilivdd~--~~~~~~l~~~L~~~g~----~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ 77 (127)
T 3i42_A 4 QQALIVEDY--QAAAETFKELLEMLGF----QADYVMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKT 77 (127)
T ss_dssp EEEEEECSC--HHHHHHHHHHHHHTTE----EEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSC
T ss_pred ceEEEEcCC--HHHHHHHHHHHHHcCC----CEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCC
Confidence 466777761 3345556666665442 33344455556666643 577776544 35567777776653 4
Q ss_pred CceEE-eCCCCc--cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 508 AVPVV-RKTGGL--ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 508 ~pvI~-s~~gg~--~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
+|+|+ +..... .+.+.. +..+++..|.+.++|.+++.....
T Consensus 78 ~~ii~~s~~~~~~~~~~~~~--------g~~~~l~KP~~~~~L~~~i~~~~~ 121 (127)
T 3i42_A 78 SKFVAVSGFAKNDLGKEACE--------LFDFYLEKPIDIASLEPILQSIEG 121 (127)
T ss_dssp CEEEEEECC-CTTCCHHHHH--------HCSEEEESSCCHHHHHHHHHHHC-
T ss_pred CCEEEEECCcchhHHHHHHH--------hhHHheeCCCCHHHHHHHHHHhhc
Confidence 67766 333322 223333 678999999999999999988775
No 278
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=34.60 E-value=42 Score=30.61 Aligned_cols=41 Identities=10% Similarity=0.155 Sum_probs=26.8
Q ss_pred CceeEEEEeecccccccccCHH-HHHhHHHHHHHhc--CCeEEEEe
Q 043397 107 NLMHIIHITAEMAPIAKVGGLG-DVVTGLARACLSR--GHTVDIML 149 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~-~~~~~La~aL~~~--Gh~V~vi~ 149 (596)
.+||||+|.....| ..++.. ..+..+++.+.+. |++|.++-
T Consensus 3 mM~kiLiI~gSpr~--~~~S~s~~l~~~~~~~~~~~~~g~ev~~~d 46 (211)
T 3p0r_A 3 AMTKVLFVKANNRP--AEQAVSVKLYEAFLASYKEAHPNDTVVELD 46 (211)
T ss_dssp -CCEEEEEECCCSC--TTTCHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred ccCEEEEEEeCCCC--CCCCHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 36799999865432 135544 4455567777766 89999885
No 279
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}
Probab=34.44 E-value=26 Score=33.99 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=24.4
Q ss_pred CCCceeEEEEeecccccccccCHHHHHhHHHHHHHhc-----C-CeEEEEec
Q 043397 105 DSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSR-----G-HTVDIMLP 150 (596)
Q Consensus 105 ~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~-----G-h~V~vi~p 150 (596)
++.+|||++|. .| .+-..++..|.+. | |+|+++..
T Consensus 5 ~~~~m~I~iiG--------~G---~mG~~~a~~L~~~~~~~~g~~~V~~~~r 45 (317)
T 2qyt_A 5 NQQPIKIAVFG--------LG---GVGGYYGAMLALRAAATDGLLEVSWIAR 45 (317)
T ss_dssp --CCEEEEEEC--------CS---HHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred CCCCCEEEEEC--------cC---HHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence 34569999983 23 3345678888888 9 99999864
No 280
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=34.35 E-value=35 Score=31.79 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=18.2
Q ss_pred HHHhHHHHHHHhcCCeEEEEec
Q 043397 129 DVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 129 ~~~~~La~aL~~~Gh~V~vi~p 150 (596)
..-..+|+++.++|++|+++..
T Consensus 30 ~mG~aiA~~~~~~Ga~V~lv~~ 51 (232)
T 2gk4_A 30 HLGKIITETLLSAGYEVCLITT 51 (232)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEEeC
Confidence 3445789999999999999973
No 281
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=34.26 E-value=40 Score=28.43 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=28.6
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEE
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIM 148 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi 148 (596)
+|||+++- +. .+|....++..+++.|.+.|++|.++
T Consensus 1 M~ki~I~Y--~S---~tGnT~~~A~~ia~~l~~~g~~v~~~ 36 (147)
T 2hna_A 1 MADITLIS--GS---TLGGAEYVAEHLAEKLEEAGFTTETL 36 (147)
T ss_dssp CCSEEEEC--CT---TSCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEE--EC---CchHHHHHHHHHHHHHHHCCCceEEe
Confidence 35777662 22 46899999999999999999999876
No 282
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=34.19 E-value=77 Score=31.11 Aligned_cols=93 Identities=13% Similarity=0.056 Sum_probs=57.5
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh-
Q 043397 405 TVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA- 483 (596)
Q Consensus 405 ~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~- 483 (596)
+-..++.+|-=. =|-...+.++... ++++++-+.+ ...+..++.+++++.. ++ +++ +.++++.
T Consensus 22 ~mirigiIG~G~--ig~~~~~~~~~~~--~~~~lvav~d----~~~~~a~~~a~~~g~~-~~-----y~d--~~ell~~~ 85 (350)
T 4had_A 22 SMLRFGIISTAK--IGRDNVVPAIQDA--ENCVVTAIAS----RDLTRAREMADRFSVP-HA-----FGS--YEEMLASD 85 (350)
T ss_dssp CCEEEEEESCCH--HHHHTHHHHHHHC--SSEEEEEEEC----SSHHHHHHHHHHHTCS-EE-----ESS--HHHHHHCS
T ss_pred CccEEEEEcChH--HHHHHHHHHHHhC--CCeEEEEEEC----CCHHHHHHHHHHcCCC-ee-----eCC--HHHHhcCC
Confidence 345677777411 0112234555443 6788876665 3456778888888763 21 233 4556654
Q ss_pred -CCEEEEcCCCCCCchHHHHHHhcCCceEEe
Q 043397 484 -ADIVLVPSIYEPCGLAQMIGMRYGAVPVVR 513 (596)
Q Consensus 484 -aDi~l~PS~~E~~gl~~lEAma~G~pvI~s 513 (596)
.|++++.+....=.-.+++|+.+|++|++=
T Consensus 86 ~iDaV~I~tP~~~H~~~~~~al~aGkhVl~E 116 (350)
T 4had_A 86 VIDAVYIPLPTSQHIEWSIKAADAGKHVVCE 116 (350)
T ss_dssp SCSEEEECSCGGGHHHHHHHHHHTTCEEEEC
T ss_pred CCCEEEEeCCCchhHHHHHHHHhcCCEEEEe
Confidence 689888776543344678999999999983
No 283
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=33.93 E-value=37 Score=32.96 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=20.7
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+..-..+++.|.++||+|.++..
T Consensus 18 GatG~iG~~l~~~L~~~g~~V~~~~r 43 (342)
T 1y1p_A 18 GANGFVASHVVEQLLEHGYKVRGTAR 43 (342)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 55555666889999999999998874
No 284
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=33.91 E-value=34 Score=32.23 Aligned_cols=39 Identities=18% Similarity=0.031 Sum_probs=28.2
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccch
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECI 155 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~ 155 (596)
||||+....- =.+.-+..|+++|.+.| +|+|++|..++.
T Consensus 1 M~ILlTNDDG-------i~apGi~aL~~~l~~~g-~V~VVAP~~~~S 39 (247)
T 1j9j_A 1 MRILVTNDDG-------IQSKGIIVLAELLSEEH-EVFVVAPDKERS 39 (247)
T ss_dssp CEEEEECSSC-------TTCHHHHHHHHHHTTTS-EEEEEEESSCCT
T ss_pred CeEEEEcCCC-------CCcHhHHHHHHHHHhCC-CEEEEecCCCCc
Confidence 7888765332 22455778899998888 999999876543
No 285
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=33.82 E-value=35 Score=34.42 Aligned_cols=35 Identities=26% Similarity=0.198 Sum_probs=23.6
Q ss_pred cCCCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 104 KDSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 104 ~~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
+..+.++|++|. ||.. -..+|.+|+++|++|.|+=
T Consensus 19 ~~~~~~dV~IVG---------aG~a--Gl~~A~~La~~G~~V~v~E 53 (407)
T 3rp8_A 19 YFQGHMKAIVIG---------AGIG--GLSAAVALKQSGIDCDVYE 53 (407)
T ss_dssp ----CCEEEEEC---------CSHH--HHHHHHHHHHTTCEEEEEE
T ss_pred cCCCCCEEEEEC---------CCHH--HHHHHHHHHhCCCCEEEEe
Confidence 344568999984 3333 3467888999999999984
No 286
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=33.65 E-value=26 Score=33.32 Aligned_cols=34 Identities=15% Similarity=0.108 Sum_probs=26.3
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
..|+|++. ||.+..-..+++.|.++||+|.++..
T Consensus 11 ~~~~vlVt----------GatG~iG~~l~~~L~~~g~~V~~~~r 44 (292)
T 1vl0_A 11 HHMKILIT----------GANGQLGREIQKQLKGKNVEVIPTDV 44 (292)
T ss_dssp -CEEEEEE----------STTSHHHHHHHHHHTTSSEEEEEECT
T ss_pred ccceEEEE----------CCCChHHHHHHHHHHhCCCeEEeccC
Confidence 45788866 66666667899999999999998863
No 287
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=33.64 E-value=30 Score=33.86 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=23.2
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
++||||++ ||.+..-..++++|.++|+++.|++
T Consensus 23 ~~~~vlVt----------GatG~iG~~l~~~L~~~g~~~~v~~ 55 (346)
T 4egb_A 23 NAMNILVT----------GGAGFIGSNFVHYMLQSYETYKIIN 55 (346)
T ss_dssp -CEEEEEE----------TTTSHHHHHHHHHHHHHCTTEEEEE
T ss_pred CCCeEEEE----------CCccHHHHHHHHHHHhhCCCcEEEE
Confidence 34677765 6666666789999999996655554
No 288
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=33.53 E-value=1.8e+02 Score=23.14 Aligned_cols=108 Identities=7% Similarity=0.044 Sum_probs=61.5
Q ss_pred CCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh-CCEEEEcCCC-CCCchHHHHHHh--c----
Q 043397 435 GGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA-ADIVLVPSIY-EPCGLAQMIGMR--Y---- 506 (596)
Q Consensus 435 ~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~-aDi~l~PS~~-E~~gl~~lEAma--~---- 506 (596)
+.+++|+.+. ......+....+..+. .| ...-+.++....+.. .|++++-... ..-|+.+++.+. .
T Consensus 7 ~~~ILivdd~--~~~~~~l~~~L~~~g~--~v--~~~~~~~~a~~~~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~ 80 (136)
T 1dcf_A 7 GLKVLVMDEN--GVSRMVTKGLLVHLGC--EV--TTVSSNEECLRVVSHEHKVVFMDVCMPGVENYQIALRIHEKFTKQR 80 (136)
T ss_dssp TCEEEEECSC--HHHHHHHHHHHHHTTC--EE--EEESSHHHHHHHCCTTCSEEEEECCSSTTTTTHHHHHHHHHHC-CC
T ss_pred CCeEEEEeCC--HHHHHHHHHHHHHcCC--eE--EEeCCHHHHHHHHhccCCEEEEeCCCCCCcHHHHHHHHHHhhhhcc
Confidence 4567777761 2234445555554432 23 333444445444432 3888775443 344666666664 1
Q ss_pred -CCc-eE-EeCCCCccc---cccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHH
Q 043397 507 -GAV-PV-VRKTGGLAD---TVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFR 556 (596)
Q Consensus 507 -G~p-vI-~s~~gg~~e---~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 556 (596)
..| +| .+....... .... |..+|+..|.+.++|.+.|.+++.
T Consensus 81 ~~~~~ii~~s~~~~~~~~~~~~~~--------ga~~~l~KP~~~~~L~~~l~~~~~ 128 (136)
T 1dcf_A 81 HQRPLLVALSGNTDKSTKEKCMSF--------GLDGVLLKPVSLDNIRDVLSDLLE 128 (136)
T ss_dssp SCCCEEEEEESCCSHHHHHHHHHT--------TCCEEEESSCCHHHHHHHHHHHHS
T ss_pred CCCceEEEEeCCCCHHHHHHHHHc--------CCCeEEECCCCHHHHHHHHHHHhc
Confidence 234 44 354444222 2333 678999999999999999998875
No 289
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*
Probab=33.53 E-value=20 Score=33.61 Aligned_cols=34 Identities=26% Similarity=0.038 Sum_probs=24.0
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||+++||- ..||++. .+++.|+++|++|.++...
T Consensus 1 Mk~vlVTG------as~gIG~---~ia~~l~~~G~~V~~~~r~ 34 (254)
T 1zmt_A 1 MSTAIVTN------VKHFGGM---GSALRLSEAGHTVACHDES 34 (254)
T ss_dssp -CEEEESS------TTSTTHH---HHHHHHHHTTCEEEECCGG
T ss_pred CeEEEEeC------CCchHHH---HHHHHHHHCCCEEEEEeCC
Confidence 67777762 2355555 7899999999999887643
No 290
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A
Probab=33.44 E-value=37 Score=33.05 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=20.6
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+-.-..++++|.++||+|.++..
T Consensus 16 GatGfIG~~l~~~Ll~~G~~V~~~~r 41 (338)
T 2rh8_A 16 GGTGFVASLLVKLLLQKGYAVNTTVR 41 (338)
T ss_dssp CTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCchHHHHHHHHHHHHCCCEEEEEEc
Confidence 55566666889999999999988763
No 291
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=33.21 E-value=30 Score=31.70 Aligned_cols=31 Identities=19% Similarity=0.150 Sum_probs=25.2
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
+|||.+| | .|.+-..+++.|.+.||+|.+++
T Consensus 23 mmkI~II----------G-~G~mG~~la~~l~~~g~~V~~v~ 53 (220)
T 4huj_A 23 MTTYAII----------G-AGAIGSALAERFTAAQIPAIIAN 53 (220)
T ss_dssp SCCEEEE----------E-CHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCEEEEE----------C-CCHHHHHHHHHHHhCCCEEEEEE
Confidence 5799988 2 36777789999999999999844
No 292
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*
Probab=33.20 E-value=36 Score=33.90 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=25.5
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcC-CeEEEEec
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRG-HTVDIMLP 150 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~G-h~V~vi~p 150 (596)
.|+|+++ ||.+..-..++++|.++| |+|.++..
T Consensus 32 ~~~ilVt----------GatG~iG~~l~~~L~~~g~~~V~~~~r 65 (377)
T 2q1s_A 32 NTNVMVV----------GGAGFVGSNLVKRLLELGVNQVHVVDN 65 (377)
T ss_dssp TCEEEEE----------TTTSHHHHHHHHHHHHTTCSEEEEECC
T ss_pred CCEEEEE----------CCccHHHHHHHHHHHHcCCceEEEEEC
Confidence 4677655 555666678899999999 99999874
No 293
>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Probab=33.07 E-value=46 Score=30.51 Aligned_cols=27 Identities=7% Similarity=-0.037 Sum_probs=20.8
Q ss_pred cCHHHHHhHHHHHHHhc--CCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSR--GHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~--Gh~V~vi~p~ 151 (596)
||.+..-..++++|.++ ||+|.++...
T Consensus 11 GasG~iG~~l~~~l~~~~~g~~V~~~~r~ 39 (253)
T 1xq6_A 11 GASGRTGQIVYKKLKEGSDKFVAKGLVRS 39 (253)
T ss_dssp STTSHHHHHHHHHHHHTTTTCEEEEEESC
T ss_pred cCCcHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence 55555556889999999 8999998743
No 294
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=32.94 E-value=63 Score=27.68 Aligned_cols=39 Identities=8% Similarity=0.005 Sum_probs=28.2
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
..||+|++-.- | ..--.-..+..++..|.++||+|+|-.
T Consensus 5 ~~m~~LilLGC--P--E~Pvq~p~~lYl~~~Lk~~G~~v~VA~ 43 (157)
T 1kjn_A 5 STGKALMVLGC--P--ESPVQIPLAIYTSHKLKKKGFRVTVTA 43 (157)
T ss_dssp -CCEEEEECCC--S--CSTTHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cceeeeEEecC--C--CCcchhhHHHHHHHHHHhcCCeeEEec
Confidence 46998888432 2 112346677789999999999999987
No 295
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=32.60 E-value=32 Score=32.65 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=24.2
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhc-CCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSR-GHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~-Gh~V~vi~p~ 151 (596)
|||+++ ||.+..-..+++.|.+. |++|.+++..
T Consensus 1 M~ilVt----------GatG~iG~~l~~~L~~~~g~~V~~~~R~ 34 (289)
T 3e48_A 1 MNIMLT----------GATGHLGTHITNQAIANHIDHFHIGVRN 34 (289)
T ss_dssp CCEEEE----------TTTSHHHHHHHHHHHHTTCTTEEEEESS
T ss_pred CEEEEE----------cCCchHHHHHHHHHhhCCCCcEEEEECC
Confidence 677766 44455555777888888 9999999854
No 296
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=32.57 E-value=36 Score=32.96 Aligned_cols=34 Identities=26% Similarity=0.257 Sum_probs=26.0
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
.+|||.+|. .+.+-..+++.|.+.||+|.++...
T Consensus 6 ~~~~I~iIG-----------~G~mG~~~a~~l~~~G~~V~~~dr~ 39 (303)
T 3g0o_A 6 TDFHVGIVG-----------LGSMGMGAARSCLRAGLSTWGADLN 39 (303)
T ss_dssp -CCEEEEEC-----------CSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCeEEEEC-----------CCHHHHHHHHHHHHCCCeEEEEECC
Confidence 458999882 3556668999999999999998643
No 297
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=32.56 E-value=56 Score=26.66 Aligned_cols=37 Identities=11% Similarity=0.063 Sum_probs=27.3
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
|++|+.... |+ ..-..+-+.+++.++.+.||+|.|+.
T Consensus 3 k~~~vv~~~-P~--g~~~~~~al~~a~a~~a~~~~v~vff 39 (119)
T 2d1p_B 3 RIAFVFSTA-PH--GTAAGREGLDALLATSALTDDLAVFF 39 (119)
T ss_dssp CEEEEECSC-TT--TSTHHHHHHHHHHHHHTTCSCEEEEE
T ss_pred EEEEEEcCC-CC--CcHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 588886554 53 22345667789999999999999887
No 298
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Probab=32.55 E-value=36 Score=33.90 Aligned_cols=27 Identities=22% Similarity=0.162 Sum_probs=21.4
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||.+..-..+++.|.++||+|.++...
T Consensus 35 GatG~IG~~l~~~L~~~g~~V~~~~r~ 61 (381)
T 1n7h_A 35 GITGQDGSYLTEFLLGKGYEVHGLIRR 61 (381)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cCCchHHHHHHHHHHHCCCEEEEEecC
Confidence 555666668899999999999998743
No 299
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=32.43 E-value=35 Score=31.14 Aligned_cols=34 Identities=18% Similarity=0.123 Sum_probs=24.7
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
++|||+++. .|.....+++.|.+.||+|.++...
T Consensus 27 ~~~~I~iiG-----------~G~~G~~la~~l~~~g~~V~~~~r~ 60 (215)
T 2vns_A 27 EAPKVGILG-----------SGDFARSLATRLVGSGFKVVVGSRN 60 (215)
T ss_dssp --CCEEEEC-----------CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCEEEEEc-----------cCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 468999882 2555567889999999999887643
No 300
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=32.36 E-value=38 Score=31.64 Aligned_cols=34 Identities=29% Similarity=0.199 Sum_probs=26.3
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
..|||.+|. .+.+-..+++.|.+.||+|.++...
T Consensus 18 ~~~kIgiIG-----------~G~mG~alA~~L~~~G~~V~~~~r~ 51 (245)
T 3dtt_A 18 QGMKIAVLG-----------TGTVGRTMAGALADLGHEVTIGTRD 51 (245)
T ss_dssp -CCEEEEEC-----------CSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCeEEEEC-----------CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 458999982 3566678999999999999988643
No 301
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=32.32 E-value=39 Score=32.49 Aligned_cols=39 Identities=23% Similarity=0.150 Sum_probs=28.3
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccch
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECI 155 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~ 155 (596)
||||+....- =.+.-+..|+++|.+.| +|+|++|..++.
T Consensus 1 M~ILlTNDDG-------i~ApGi~aL~~aL~~~g-~V~VVAP~~~qS 39 (280)
T 1l5x_A 1 MKILVTNDDG-------VHSPGLRLLYQFALSLG-DVDVVAPESPKS 39 (280)
T ss_dssp CEEEEECSSC-------TTCHHHHHHHHHHGGGS-EEEEEEESSCTT
T ss_pred CeEEEEcCCC-------CCcHhHHHHHHHHHhCC-CEEEEecCCCCc
Confidence 7888765332 22455778899998888 999999876543
No 302
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=32.23 E-value=39 Score=32.05 Aligned_cols=33 Identities=33% Similarity=0.389 Sum_probs=23.9
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+|||+++ | .|..-..++++|.++||+|.++...
T Consensus 3 ~~~ilVt----------G-aG~iG~~l~~~L~~~g~~V~~~~r~ 35 (286)
T 3gpi_A 3 LSKILIA----------G-CGDLGLELARRLTAQGHEVTGLRRS 35 (286)
T ss_dssp CCCEEEE----------C-CSHHHHHHHHHHHHTTCCEEEEECT
T ss_pred CCcEEEE----------C-CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3677766 3 1344457889999999999999743
No 303
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=32.19 E-value=93 Score=29.14 Aligned_cols=79 Identities=14% Similarity=0.045 Sum_probs=44.6
Q ss_pred EEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCH-HHHHHHHH-hCCEEEEcCCCCCCchHHHHHHhcCCceEEeC
Q 043397 437 QMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSE-ELSHMLYA-AADIVLVPSIYEPCGLAQMIGMRYGAVPVVRK 514 (596)
Q Consensus 437 ~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~-~~l~~~~a-~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~ 514 (596)
++.|+|-+ |.+-..+.+.+.+. +.+.+.+.++. +.+..++. .+|+++--+.-+..--.+..+...|+|+|+..
T Consensus 2 kV~V~Ga~--G~mG~~i~~~~~~~---~~~elva~~d~~~dl~~~~~~~~DvvIDfT~p~a~~~~~~~a~~~g~~~VigT 76 (245)
T 1p9l_A 2 RVGVLGAK--GKVGTTMVRAVAAA---DDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGT 76 (245)
T ss_dssp EEEEETTT--SHHHHHHHHHHHHC---TTCEEEEEECTTCCTHHHHHTTCCEEEECSCTTTHHHHHHHHHHTTCEEEECC
T ss_pred EEEEECCC--CHHHHHHHHHHHhC---CCCEEEEEEccCCCHHHHhccCCcEEEEccChHHHHHHHHHHHHcCCCEEEcC
Confidence 56777721 66666666655442 23444433321 12334444 79999955544443333456688999999977
Q ss_pred CCCccc
Q 043397 515 TGGLAD 520 (596)
Q Consensus 515 ~gg~~e 520 (596)
+|-..+
T Consensus 77 TG~~~e 82 (245)
T 1p9l_A 77 TGFTAE 82 (245)
T ss_dssp CCCCHH
T ss_pred CCCCHH
Confidence 664333
No 304
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=32.14 E-value=29 Score=33.55 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=24.4
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
|||+++ ||.+..-..+++.|.++||+|.++.
T Consensus 4 ~~ilVt----------GatG~iG~~l~~~L~~~g~~v~~~~ 34 (321)
T 1e6u_A 4 QRVFIA----------GHRGMVGSAIRRQLEQRGDVELVLR 34 (321)
T ss_dssp EEEEEE----------TTTSHHHHHHHHHHTTCTTEEEECC
T ss_pred CEEEEE----------CCCcHHHHHHHHHHHhCCCeEEEEe
Confidence 677765 6666666788999999999988865
No 305
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=32.03 E-value=36 Score=32.33 Aligned_cols=32 Identities=25% Similarity=0.208 Sum_probs=24.5
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
|||.++. . |.+-..++..|.+.||+|+++...
T Consensus 1 m~i~iiG----------~-G~~G~~~a~~l~~~g~~V~~~~r~ 32 (291)
T 1ks9_A 1 MKITVLG----------C-GALGQLWLTALCKQGHEVQGWLRV 32 (291)
T ss_dssp CEEEEEC----------C-SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CeEEEEC----------c-CHHHHHHHHHHHhCCCCEEEEEcC
Confidence 6888872 2 555568899999999999998643
No 306
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}
Probab=31.72 E-value=37 Score=33.39 Aligned_cols=34 Identities=18% Similarity=0.062 Sum_probs=25.5
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
.+|||.+|. .|.+-..++..|.+.||+|+++...
T Consensus 13 ~~~kI~iIG-----------~G~mG~ala~~L~~~G~~V~~~~r~ 46 (335)
T 1z82_A 13 MEMRFFVLG-----------AGSWGTVFAQMLHENGEEVILWARR 46 (335)
T ss_dssp -CCEEEEEC-----------CSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cCCcEEEEC-----------cCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 358888882 2555568899999999999998743
No 307
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=31.70 E-value=27 Score=33.87 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=19.7
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||.+..-..++++|.++||+|.+++..
T Consensus 18 GatG~iG~~l~~~L~~~g~~V~~l~R~ 44 (318)
T 2r6j_A 18 GGTGYIGNHMVKGSLKLGHPTYVFTRP 44 (318)
T ss_dssp TTTSTTHHHHHHHHHHTTCCEEEEECT
T ss_pred CCCchHHHHHHHHHHHCCCcEEEEECC
Confidence 333344447888999999999998854
No 308
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=31.66 E-value=42 Score=30.94 Aligned_cols=34 Identities=26% Similarity=0.308 Sum_probs=24.6
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||+++|| ||.+-.-..+++.|+++|++|.++...
T Consensus 3 ~k~vlVT---------Gas~GIG~a~a~~l~~~G~~V~~~~r~ 36 (235)
T 3l6e_A 3 LGHIIVT---------GAGSGLGRALTIGLVERGHQVSMMGRR 36 (235)
T ss_dssp CCEEEEE---------STTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEE---------CCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 4666665 444444458899999999999888643
No 309
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=31.65 E-value=37 Score=31.49 Aligned_cols=34 Identities=21% Similarity=0.457 Sum_probs=27.8
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFY 152 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~ 152 (596)
.++||+| || |.++...++.|.+.|.+|+|+.|..
T Consensus 31 gk~VLVV----------Gg-G~va~~ka~~Ll~~GA~VtVvap~~ 64 (223)
T 3dfz_A 31 GRSVLVV----------GG-GTIATRRIKGFLQEGAAITVVAPTV 64 (223)
T ss_dssp TCCEEEE----------CC-SHHHHHHHHHHGGGCCCEEEECSSC
T ss_pred CCEEEEE----------CC-CHHHHHHHHHHHHCCCEEEEECCCC
Confidence 3577777 55 6788899999999999999998753
No 310
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=31.45 E-value=57 Score=31.03 Aligned_cols=41 Identities=27% Similarity=0.268 Sum_probs=31.0
Q ss_pred CCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 106 SNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 106 ~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
.++||++.|+..- | .-|-...+.+||.+|++.|.+|.++=.
T Consensus 79 ~~~~kvI~vts~k-g---G~GKTt~a~nLA~~lA~~G~rVLLID~ 119 (271)
T 3bfv_A 79 DSAVQSIVITSEA-P---GAGKSTIAANLAVAYAQAGYKTLIVDG 119 (271)
T ss_dssp TCCCCEEEEECSS-T---TSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEECCC-C---CCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 4567888887533 1 235677889999999999999999863
No 311
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A
Probab=31.34 E-value=40 Score=32.86 Aligned_cols=27 Identities=19% Similarity=-0.098 Sum_probs=21.4
Q ss_pred cCHHHHHhHHHHHHHhc-CCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSR-GHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~-Gh~V~vi~p~ 151 (596)
||.+..-..+++.|.++ ||+|.++...
T Consensus 7 GatG~iG~~l~~~L~~~~g~~V~~~~r~ 34 (345)
T 2bll_A 7 GVNGFIGNHLTERLLREDHYEVYGLDIG 34 (345)
T ss_dssp TCSSHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred CCCcHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 66666667889999998 8999998743
No 312
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=31.22 E-value=54 Score=30.40 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=28.4
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+|||+.|+..- ..-|-.+.+.+||.+|+++|++|.++=..
T Consensus 1 M~~vi~v~s~k----gGvGKTt~a~~LA~~la~~g~~VlliD~D 40 (260)
T 3q9l_A 1 MARIIVVTSGK----GGVGKTTSSAAIATGLAQKGKKTVVIDFA 40 (260)
T ss_dssp -CEEEEEECSS----TTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCC----CCCcHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 35777665422 11255778899999999999999998644
No 313
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Probab=31.19 E-value=43 Score=33.45 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=24.7
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHH-hcCCeEEEEec
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACL-SRGHTVDIMLP 150 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~-~~Gh~V~vi~p 150 (596)
|+||+. ||.+..-..+++.|. ++||+|.++..
T Consensus 3 m~vlVT----------GatG~iG~~l~~~L~~~~g~~V~~~~r 35 (397)
T 1gy8_A 3 MRVLVC----------GGAGYIGSHFVRALLRDTNHSVVIVDS 35 (397)
T ss_dssp CEEEEE----------TTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred CEEEEE----------CCCCHHHHHHHHHHHHhCCCEEEEEec
Confidence 777765 555556668899999 99999999864
No 314
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*
Probab=31.13 E-value=29 Score=33.17 Aligned_cols=30 Identities=23% Similarity=0.188 Sum_probs=23.4
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
|||+++ ||.+..-..++++|. +||+|.++.
T Consensus 1 m~ilVt----------GatG~iG~~l~~~L~-~g~~V~~~~ 30 (299)
T 1n2s_A 1 MNILLF----------GKTGQVGWELQRSLA-PVGNLIALD 30 (299)
T ss_dssp CEEEEE----------CTTSHHHHHHHHHTT-TTSEEEEEC
T ss_pred CeEEEE----------CCCCHHHHHHHHHhh-cCCeEEEec
Confidence 677665 565666668889999 899999986
No 315
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}
Probab=31.13 E-value=36 Score=31.32 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=19.6
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
||.+-.-..+++.|+++|++|.++.
T Consensus 8 GasggiG~~~a~~l~~~G~~v~~~~ 32 (245)
T 2ph3_A 8 GASRGIGRAIALRLAEDGFALAIHY 32 (245)
T ss_dssp TTTSHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEc
Confidence 5555555589999999999999883
No 316
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=31.12 E-value=48 Score=29.79 Aligned_cols=41 Identities=5% Similarity=0.064 Sum_probs=27.0
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcC--CeEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRG--HTVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~G--h~V~vi~ 149 (596)
+||||+|.....+. ..|=....+..+++.+.+.| ++|.++-
T Consensus 1 M~kilii~gS~r~~-~~s~t~~la~~~~~~~~~~g~~~~v~~~d 43 (208)
T 2hpv_A 1 MSKLLVVKAHPLTK-EESRSVRALETFLASYRETNPSDEIEILD 43 (208)
T ss_dssp -CEEEEEECCSSCT-TTCHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred CCeEEEEEecCCCC-CCCHHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 47999997654320 12334556667788888887 9998884
No 317
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=31.09 E-value=40 Score=33.50 Aligned_cols=27 Identities=26% Similarity=0.166 Sum_probs=21.4
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||.+..-..++++|.++||+|.++...
T Consensus 31 GatG~iG~~l~~~L~~~g~~V~~~~r~ 57 (375)
T 1t2a_A 31 GITGQDGSYLAEFLLEKGYEVHGIVRR 57 (375)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 555566668899999999999998743
No 318
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=31.07 E-value=3e+02 Score=24.98 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=22.6
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcC--CeEEEEec
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRG--HTVDIMLP 150 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~G--h~V~vi~p 150 (596)
+++||+++. .|.+.....+..++.+.+ ++|.++.+
T Consensus 7 ~~~ri~vl~---------SG~gsnl~all~~~~~~~~~~~I~~Vis 43 (215)
T 3kcq_A 7 KELRVGVLI---------SGRGSNLEALAKAFSTEESSVVISCVIS 43 (215)
T ss_dssp CCEEEEEEE---------SSCCHHHHHHHHHTCCC-CSEEEEEEEE
T ss_pred CCCEEEEEE---------ECCcHHHHHHHHHHHcCCCCcEEEEEEe
Confidence 457888874 344677778888876543 57765554
No 319
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*
Probab=30.98 E-value=43 Score=32.52 Aligned_cols=35 Identities=23% Similarity=0.134 Sum_probs=24.7
Q ss_pred CCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCC--eEEEEecc
Q 043397 106 SNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGH--TVDIMLPF 151 (596)
Q Consensus 106 ~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh--~V~vi~p~ 151 (596)
.++|||+++. + |.+-..++..|+..|| +|.++...
T Consensus 5 ~~~mkI~IiG----------a-G~vG~~~a~~l~~~g~~~~V~l~d~~ 41 (319)
T 1lld_A 5 VKPTKLAVIG----------A-GAVGSTLAFAAAQRGIAREIVLEDIA 41 (319)
T ss_dssp --CCEEEEEC----------C-SHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred CCCCEEEEEC----------C-CHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 4568999983 2 4444468888999999 99988654
No 320
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*
Probab=30.95 E-value=40 Score=32.93 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=20.7
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+..-..+++.|.++||+|.++..
T Consensus 9 GatG~iG~~l~~~L~~~g~~V~~~~r 34 (348)
T 1ek6_A 9 GGAGYIGSHTVLELLEAGYLPVVIDN 34 (348)
T ss_dssp TTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEec
Confidence 55555666889999999999999863
No 321
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=30.94 E-value=44 Score=33.03 Aligned_cols=26 Identities=27% Similarity=0.199 Sum_probs=21.4
Q ss_pred cCHHHHHhHHHHHHHh--cCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLS--RGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~--~Gh~V~vi~p 150 (596)
||.+-.-..++++|.+ .||+|.++..
T Consensus 17 GatG~IG~~l~~~L~~~~~g~~V~~~~r 44 (362)
T 3sxp_A 17 GGAGFVGSNLAFHFQENHPKAKVVVLDK 44 (362)
T ss_dssp TTTSHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred CCCCHHHHHHHHHHHhhCCCCeEEEEEC
Confidence 6666666689999999 9999999874
No 322
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=30.93 E-value=41 Score=32.25 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=27.7
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
|||++++...... ... ......+++++.++||+|.++.+.
T Consensus 2 m~i~il~~~~~~~-~~~--~~s~~~l~~a~~~~G~~v~~~d~~ 41 (316)
T 1gsa_A 2 IKLGIVMDPIANI-NIK--KDSSFAMLLEAQRRGYELHYMEMG 41 (316)
T ss_dssp CEEEEECSCGGGC-CTT--TCHHHHHHHHHHHTTCEEEEECGG
T ss_pred ceEEEEeCcHHhC-CcC--CChHHHHHHHHHHCCCEEEEEchh
Confidence 6999997544221 111 123457999999999999999754
No 323
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=30.86 E-value=36 Score=32.92 Aligned_cols=31 Identities=26% Similarity=0.384 Sum_probs=27.0
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
+||.+| ||.|.+-..+++.|.+.||+|.++.
T Consensus 22 ~~I~iI----------Gg~G~mG~~la~~l~~~G~~V~~~~ 52 (298)
T 2pv7_A 22 HKIVIV----------GGYGKLGGLFARYLRASGYPISILD 52 (298)
T ss_dssp CCEEEE----------TTTSHHHHHHHHHHHTTTCCEEEEC
T ss_pred CEEEEE----------cCCCHHHHHHHHHHHhCCCeEEEEE
Confidence 588887 7678888899999999999999885
No 324
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}
Probab=30.82 E-value=20 Score=34.51 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=22.0
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
++|||.+|. .| .+-..+++.|.+.||+|.++.
T Consensus 2 ~~m~i~iiG--------~G---~~G~~~a~~l~~~g~~V~~~~ 33 (295)
T 1yb4_A 2 NAMKLGFIG--------LG---IMGSPMAINLARAGHQLHVTT 33 (295)
T ss_dssp --CEEEECC--------CS---TTHHHHHHHHHHTTCEEEECC
T ss_pred CCCEEEEEc--------cC---HHHHHHHHHHHhCCCEEEEEc
Confidence 568999883 23 334467888889999997764
No 325
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=30.80 E-value=3.7e+02 Score=27.49 Aligned_cols=78 Identities=13% Similarity=0.067 Sum_probs=46.0
Q ss_pred HhcCCceEEeCCC-CccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCHHHH
Q 043397 504 MRYGAVPVVRKTG-GLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIMENDNSWNNA 582 (596)
Q Consensus 504 ma~G~pvI~s~~g-g~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~ 582 (596)
...|+|+.-..+| ++ +-++..++. .-..-++..+|..+|.+.+++.++ +.+...++.++..+.+|+.+.+
T Consensus 263 ~~~g~PI~fig~Ge~v-ddL~~f~~~----~~~~~llg~gd~~~l~e~~~~~~~----~~~~~~~~~~k~~~~~f~l~d~ 333 (443)
T 3dm5_A 263 AATGAPIKFIGTGEKI-DDIEPFDPP----RFVSRLLGLGDIQGLLEKFKELEK----EVEIKEEDIERFLRGKFTLKDM 333 (443)
T ss_dssp HTTCCCEEEEECSSST-TCEEECCHH----HHHHHHTTTTCHHHHHHHHHHHHT----THHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHCCCEEEEEcCCCh-HHhhhCCHH----HHHHHHcCCCcHHHHHHHHHHhhh----hhHHHHHHHHHHhhCCcCHHHH
Confidence 3679888754444 23 222221110 111223345688889988888875 4431123666666678999999
Q ss_pred HHHHHHHH
Q 043397 583 AGKYMEIY 590 (596)
Q Consensus 583 ~~~~~~iy 590 (596)
.+++.++-
T Consensus 334 ~~q~~~~~ 341 (443)
T 3dm5_A 334 YAQLEAMR 341 (443)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987763
No 326
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=30.72 E-value=59 Score=29.67 Aligned_cols=39 Identities=26% Similarity=0.107 Sum_probs=28.0
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+|++.|+..- ..-|-.+.+..||.+|+++|++|.++=..
T Consensus 2 ~~~i~v~s~k----gGvGKTt~a~~LA~~la~~g~~VlliD~D 40 (237)
T 1g3q_A 2 GRIISIVSGK----GGTGKTTVTANLSVALGDRGRKVLAVDGD 40 (237)
T ss_dssp CEEEEEECSS----TTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ceEEEEecCC----CCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 4666665322 12355678899999999999999998643
No 327
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=30.66 E-value=49 Score=30.39 Aligned_cols=41 Identities=12% Similarity=-0.050 Sum_probs=28.9
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhc-CCeEEEEecc
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSR-GHTVDIMLPF 151 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~-Gh~V~vi~p~ 151 (596)
++|||+.++..- ..-|-.+.+.+||.+|+++ |++|.++=..
T Consensus 2 ~~~~vI~v~s~k----GGvGKTt~a~~LA~~la~~~g~~VlliD~D 43 (245)
T 3ea0_A 2 NAKRVFGFVSAK----GGDGGSCIAANFAFALSQEPDIHVLAVDIS 43 (245)
T ss_dssp -CCEEEEEEESS----TTSSHHHHHHHHHHHHTTSTTCCEEEEECC
T ss_pred CCCeEEEEECCC----CCcchHHHHHHHHHHHHhCcCCCEEEEECC
Confidence 457877665432 1235567888999999999 9999998643
No 328
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}
Probab=30.52 E-value=46 Score=30.72 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=20.5
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||.+-.-..+++.|+++|++|.++...
T Consensus 9 GasggiG~~~a~~l~~~G~~V~~~~r~ 35 (250)
T 2cfc_A 9 GASSGNGLAIATRFLARGDRVAALDLS 35 (250)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 444455557899999999999988743
No 329
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=30.48 E-value=2.1e+02 Score=27.67 Aligned_cols=105 Identities=15% Similarity=0.064 Sum_probs=0.0
Q ss_pred eeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHHcCCE
Q 043397 358 ILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQ 437 (596)
Q Consensus 358 I~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~ 437 (596)
|-||-+ +...|. .-..+--.+++.+|- -+...|.|+|-. ...=.+.++.++.++ +++
T Consensus 119 VINa~~-~~~HPt---------------QaLaDl~Ti~e~~g~---l~gl~va~vGD~-~~rva~Sl~~~~~~~---g~~ 175 (307)
T 2i6u_A 119 VINALS-DEFHPC---------------QVLADLQTIAERKGA---LRGLRLSYFGDG-ANNMAHSLLLGGVTA---GIH 175 (307)
T ss_dssp EEESCC-SSCCHH---------------HHHHHHHHHHHHHSC---CTTCEEEEESCT-TSHHHHHHHHHHHHT---TCE
T ss_pred EEcCCC-CCcCcc---------------HHHHHHHHHHHHhCC---cCCeEEEEECCC-CcCcHHHHHHHHHHC---CCE
Q ss_pred EEEEecC---CCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCC
Q 043397 438 MILLGNS---PVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSI 492 (596)
Q Consensus 438 lvIvG~~---~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~ 492 (596)
+.++|.. .+....+..++.+++.|.. +.+. +++.+.++.||++.....
T Consensus 176 v~~~~P~~~~~~~~~~~~~~~~a~~~G~~--~~~~-----~d~~eav~~aDvvy~~~w 226 (307)
T 2i6u_A 176 VTVAAPEGFLPDPSVRAAAERRAQDTGAS--VTVT-----ADAHAAAAGADVLVTDTW 226 (307)
T ss_dssp EEEECCTTSCCCHHHHHHHHHHHHHHTCC--EEEE-----SCHHHHHTTCSEEEECCS
T ss_pred EEEECCccccCCHHHHHHHHHHHHHcCCe--EEEE-----ECHHHHhcCCCEEEecce
No 330
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*
Probab=30.41 E-value=27 Score=32.93 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=23.8
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.++|| ||.+-.-..+++.|.++||+|.++..
T Consensus 3 ~k~vlVT---------Gasg~IG~~la~~L~~~G~~V~~~~r 35 (267)
T 3rft_A 3 MKRLLVT---------GAAGQLGRVMRERLAPMAEILRLADL 35 (267)
T ss_dssp EEEEEEE---------STTSHHHHHHHHHTGGGEEEEEEEES
T ss_pred CCEEEEE---------CCCCHHHHHHHHHHHhcCCEEEEEec
Confidence 5666665 44444445789999999999988863
No 331
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=30.37 E-value=23 Score=29.03 Aligned_cols=65 Identities=14% Similarity=0.012 Sum_probs=38.7
Q ss_pred CCEEEEcCCC-CCCchHHHHHHh---cCCceEE-eCCCCcc---ccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHH
Q 043397 484 ADIVLVPSIY-EPCGLAQMIGMR---YGAVPVV-RKTGGLA---DTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAF 555 (596)
Q Consensus 484 aDi~l~PS~~-E~~gl~~lEAma---~G~pvI~-s~~gg~~---e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll 555 (596)
.|++++-... +.-|+.+++.+. ..+|+|. +...... +.+.. |..+|+..|.++++|..+|.+++
T Consensus 60 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~--------g~~~~l~KP~~~~~L~~~i~~~~ 131 (135)
T 3snk_A 60 PGIVILDLGGGDLLGKPGIVEARALWATVPLIAVSDELTSEQTRVLVRM--------NASDWLHKPLDGKELLNAVTFHD 131 (135)
T ss_dssp CSEEEEEEETTGGGGSTTHHHHHGGGTTCCEEEEESCCCHHHHHHHHHT--------TCSEEEESSCCHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCCchHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHc--------CcHhhccCCCCHHHHHHHHHHHh
Confidence 4666654322 233444444433 2567776 4433322 22333 67899999999999999998876
Q ss_pred H
Q 043397 556 R 556 (596)
Q Consensus 556 ~ 556 (596)
.
T Consensus 132 ~ 132 (135)
T 3snk_A 132 T 132 (135)
T ss_dssp -
T ss_pred c
Confidence 5
No 332
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=30.33 E-value=35 Score=30.57 Aligned_cols=33 Identities=18% Similarity=0.039 Sum_probs=24.5
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCC--eEEEEec
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGH--TVDIMLP 150 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh--~V~vi~p 150 (596)
.|+|+++ ||.+..-..+++.|.++|+ +|.++..
T Consensus 5 ~~~vlVt----------GatG~iG~~l~~~l~~~g~~~~V~~~~r 39 (215)
T 2a35_A 5 PKRVLLA----------GATGLTGEHLLDRILSEPTLAKVIAPAR 39 (215)
T ss_dssp CCEEEEE----------CTTSHHHHHHHHHHHHCTTCCEEECCBS
T ss_pred CceEEEE----------CCCcHHHHHHHHHHHhCCCCCeEEEEeC
Confidence 3677765 5555566688999999999 8888763
No 333
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=30.27 E-value=79 Score=27.17 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=28.8
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
.||+++-. . ..|....++..+++.|.+.|++|.++-
T Consensus 5 ~kv~IvY~--S---~~GnT~~iA~~ia~~l~~~g~~v~~~~ 40 (159)
T 3fni_A 5 TSIGVFYV--S---EYGYSDRLAQAIINGITKTGVGVDVVD 40 (159)
T ss_dssp CEEEEEEC--T---TSTTHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEEE--C---CChHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 46776632 2 359999999999999999999998875
No 334
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=30.25 E-value=37 Score=33.02 Aligned_cols=32 Identities=6% Similarity=-0.004 Sum_probs=25.9
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+|||+++. || ....+++++.++||+|.++.+.
T Consensus 2 ~m~Ililg---------~g---~~~~l~~a~~~~G~~v~~~~~~ 33 (334)
T 2r85_A 2 KVRIATYA---------SH---SALQILKGAKDEGFETIAFGSS 33 (334)
T ss_dssp CSEEEEES---------ST---THHHHHHHHHHTTCCEEEESCG
T ss_pred ceEEEEEC---------Ch---hHHHHHHHHHhCCCEEEEEECC
Confidence 48999984 33 5568999999999999999865
No 335
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=30.22 E-value=1.3e+02 Score=27.98 Aligned_cols=38 Identities=21% Similarity=0.133 Sum_probs=27.5
Q ss_pred CCEEEEcCCCCCCchHHHHHHhcCCceEE-eCCCCccccc
Q 043397 484 ADIVLVPSIYEPCGLAQMIGMRYGAVPVV-RKTGGLADTV 522 (596)
Q Consensus 484 aDi~l~PS~~E~~gl~~lEAma~G~pvI~-s~~gg~~e~i 522 (596)
-|++++....+. ...+.||...|+|+|+ .|+-.-++.|
T Consensus 158 Pdll~v~Dp~~e-~~ai~EA~~l~IPvIaivDTn~dp~~V 196 (231)
T 3bbn_B 158 PDIVIIVDQQEE-YTALRECITLGIPTICLIDTNCNPDLA 196 (231)
T ss_dssp CSEEEESCTTTT-HHHHHHHHTTTCCEEECCCSSSCCSSC
T ss_pred CCEEEEeCCccc-cHHHHHHHHhCCCEEEEecCCCCccce
Confidence 577776654322 4789999999999999 4665556655
No 336
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=30.17 E-value=47 Score=32.06 Aligned_cols=34 Identities=26% Similarity=0.308 Sum_probs=25.4
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
.++||.+|. .|.+-..+|..|++.||+|.++-..
T Consensus 14 ~~~~I~VIG-----------~G~mG~~iA~~la~~G~~V~~~d~~ 47 (302)
T 1f0y_A 14 IVKHVTVIG-----------GGLMGAGIAQVAAATGHTVVLVDQT 47 (302)
T ss_dssp CCCEEEEEC-----------CSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred cCCEEEEEC-----------CCHHHHHHHHHHHhCCCeEEEEECC
Confidence 346788882 2555567899999999999988643
No 337
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=30.08 E-value=67 Score=28.35 Aligned_cols=38 Identities=8% Similarity=0.050 Sum_probs=27.2
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhc------CCeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSR------GHTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~------Gh~V~vi~ 149 (596)
|||++|.....+ .|-...++..+++.+.+. |++|.++-
T Consensus 1 Mkilii~gS~r~---~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~d 44 (191)
T 1t0i_A 1 MKVGIIMGSVRA---KRVCPEIAAYVKRTIENSEELIDQKLKIQVVD 44 (191)
T ss_dssp CEEEEEECCCCS---SCSHHHHHHHHHHHHHTCTTTTTTTCEEEEEC
T ss_pred CeEEEEeCCCCC---CCchHHHHHHHHHHHHHhhccCCCCceEEEEe
Confidence 799999765432 244566677777778776 79999885
No 338
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=29.76 E-value=50 Score=31.22 Aligned_cols=34 Identities=21% Similarity=0.169 Sum_probs=25.1
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+|+++|| ||.+-.-..+++.|+++|++|.++...
T Consensus 5 ~k~vlVT---------Gas~gIG~~~a~~l~~~G~~V~~~~r~ 38 (281)
T 3m1a_A 5 AKVWLVT---------GASSGFGRAIAEAAVAAGDTVIGTARR 38 (281)
T ss_dssp CCEEEET---------TTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CcEEEEE---------CCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4677775 444455557899999999999888744
No 339
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=29.53 E-value=1.8e+02 Score=28.17 Aligned_cols=92 Identities=10% Similarity=0.101 Sum_probs=55.1
Q ss_pred ccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--h
Q 043397 406 VPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--A 483 (596)
Q Consensus 406 ~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~ 483 (596)
...++.+|-=.- -..+++++.+. ++++++-+-+ ...+..++++++++.. ..+++ +.++++ .
T Consensus 5 ~~~igiiG~G~~---g~~~~~~l~~~--~~~~l~av~d----~~~~~~~~~~~~~~~~------~~~~~--~~~ll~~~~ 67 (330)
T 3e9m_A 5 KIRYGIMSTAQI---VPRFVAGLRES--AQAEVRGIAS----RRLENAQKMAKELAIP------VAYGS--YEELCKDET 67 (330)
T ss_dssp CEEEEECSCCTT---HHHHHHHHHHS--SSEEEEEEBC----SSSHHHHHHHHHTTCC------CCBSS--HHHHHHCTT
T ss_pred eEEEEEECchHH---HHHHHHHHHhC--CCcEEEEEEe----CCHHHHHHHHHHcCCC------ceeCC--HHHHhcCCC
Confidence 345666664111 12345555443 5677765554 2345667777777652 11233 556777 7
Q ss_pred CCEEEEcCCCCCCchHHHHHHhcCCceEEeC
Q 043397 484 ADIVLVPSIYEPCGLAQMIGMRYGAVPVVRK 514 (596)
Q Consensus 484 aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~ 514 (596)
+|++++.+....-.-.+.+|+..|++|++-+
T Consensus 68 ~D~V~i~tp~~~h~~~~~~al~~gk~vl~EK 98 (330)
T 3e9m_A 68 IDIIYIPTYNQGHYSAAKLALSQGKPVLLEK 98 (330)
T ss_dssp CSEEEECCCGGGHHHHHHHHHHTTCCEEECS
T ss_pred CCEEEEcCCCHHHHHHHHHHHHCCCeEEEeC
Confidence 8999887665443445678999999999854
No 340
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=29.52 E-value=2e+02 Score=28.62 Aligned_cols=91 Identities=7% Similarity=-0.076 Sum_probs=56.9
Q ss_pred hhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCc---chHHHHHHHHHcCCCC
Q 043397 388 KICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHW---VQKDFEDLANLHNKGT 464 (596)
Q Consensus 388 ~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~---~~~~l~~~~~~~~~~~ 464 (596)
..+--.+++.+|- -+...|.|+|-. ...=...++.++.++ ++++.++|...-.+ ..+..++.+++.|.
T Consensus 161 LaDl~Ti~E~~g~---l~gl~va~vGD~-~~rva~Sl~~~~~~l---G~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~-- 231 (359)
T 2w37_A 161 LADFMTVKENFGK---LQGLTLTFMGDG-RNNVANSLLVTGAIL---GVNIHIVAPKALFPTEETQNIAKGFAEKSGA-- 231 (359)
T ss_dssp HHHHHHHHHHHSC---CTTCEEEEESCT-TSHHHHHHHHHHHHH---TCEEEEECCGGGSCCHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHhCC---cCCeEEEEECCC-ccchHHHHHHHHHHc---CCEEEEECCccccCCHHHHHHHHHHHHHcCC--
Confidence 3455667777763 356789999986 222356677777666 89999999721111 11223445556553
Q ss_pred cEEEEeccCHHHHHHHHHhCCEEEEcCC
Q 043397 465 STRILLMYSEELSHMLYAAADIVLVPSI 492 (596)
Q Consensus 465 ~V~~~g~~~~~~l~~~~a~aDi~l~PS~ 492 (596)
.+.+.. + +.+.++.||++....+
T Consensus 232 ~v~~~~---d--~~eav~~aDvvytd~w 254 (359)
T 2w37_A 232 KLVITD---D--LDEGLKGSNVVYTDVW 254 (359)
T ss_dssp CEEEES---C--HHHHHTTCSEEEECCS
T ss_pred eEEEEe---C--HHHHhcCCCEEEEccc
Confidence 465552 2 4567899999987655
No 341
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=29.48 E-value=60 Score=30.41 Aligned_cols=41 Identities=22% Similarity=0.226 Sum_probs=29.5
Q ss_pred CCCceeEEEEeecccccccccCH--HHHHhHHHHHHHhcCCeEEEEecc
Q 043397 105 DSNLMHIIHITAEMAPIAKVGGL--GDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 105 ~~~~mkIl~is~~~~P~~~~GG~--~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
-++++||+.|+. ..||. .+.+.+||.+|+++|++|.++=..
T Consensus 14 l~~~~~vI~v~s------~kGGvGKTT~a~nLA~~la~~G~~VlliD~D 56 (262)
T 2ph1_A 14 LGKIKSRIAVMS------GKGGVGKSTVTALLAVHYARQGKKVGILDAD 56 (262)
T ss_dssp HTTCSCEEEEEC------SSSCTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred hccCCeEEEEEc------CCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 334567776653 23544 568889999999999999988643
No 342
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=29.42 E-value=34 Score=32.93 Aligned_cols=43 Identities=9% Similarity=-0.188 Sum_probs=27.0
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
.+|||+++....... ..-.-.-...++++|.++||+|..+.+.
T Consensus 2 ~~m~v~vl~gg~s~e--~~vs~~s~~~v~~al~~~g~~v~~i~~~ 44 (307)
T 3r5x_A 2 NAMRIGVIMGGVSSE--KQVSIMTGNEMIANLDKNKYEIVPITLN 44 (307)
T ss_dssp CCEEEEEEECCSHHH--HHHHHHHHHHHHHHSCTTTEEEEEEECS
T ss_pred CCcEEEEEeCCCCcc--hHhHHHHHHHHHHHHHHCCCEEEEEccc
Confidence 469999996211110 0001233567889999999999998743
No 343
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=29.41 E-value=41 Score=32.18 Aligned_cols=39 Identities=8% Similarity=-0.128 Sum_probs=26.4
Q ss_pred ceeEEEEeecccccccccCHHH---HHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGD---VVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~---~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+|||+++.....+. -.. ....+++++.++||+|.++.+.
T Consensus 2 ~~~i~il~gg~s~e-----~~~s~~~~~~l~~al~~~G~~v~~~~~~ 43 (306)
T 1iow_A 2 TDKIAVLLGGTSAE-----REVSLNSGAAVLAGLREGGIDAYPVDPK 43 (306)
T ss_dssp CCEEEEECCCSSTT-----HHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CcEEEEEeCCCCcc-----ceEcHHhHHHHHHHHHHCCCeEEEEecC
Confidence 47899986322110 011 3467999999999999999754
No 344
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=29.25 E-value=3.6e+02 Score=25.28 Aligned_cols=100 Identities=7% Similarity=0.046 Sum_probs=63.8
Q ss_pred EEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCC--------CC---cchHHHHHHHHHcCCCCcEEEEeccCHHHH
Q 043397 409 VVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSP--------VH---WVQKDFEDLANLHNKGTSTRILLMYSEELS 477 (596)
Q Consensus 409 il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~--------~g---~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l 477 (596)
++..|- ......+..++.++++++.+..++-.+.-. .| .....+.+.+++.|+ -.+....+.+.+
T Consensus 25 ~vIAgp-c~~~~~e~a~~~a~~l~~~Ga~~vk~~~fkprts~~~~~g~~~egl~~l~~~~~~~Gl---~~~te~~d~~~~ 100 (262)
T 1zco_A 25 TIIAGP-CSIESREQIMKVAEFLAEVGIKVLRGGAFKPRTSPYSFQGYGEKALRWMREAADEYGL---VTVTEVMDTRHV 100 (262)
T ss_dssp EEEEEC-SBCCCHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTC---EEEEECCCGGGH
T ss_pred EEEEeC-CCCCCHHHHHHHHHHHHHcCCCEEEEEecccCCCcccccCccHHHHHHHHHHHHHcCC---cEEEeeCCHHhH
Confidence 333344 667779999999999988777776665410 11 122345566667776 445555666555
Q ss_pred HHHHHhCCEEEEcCCC-CCCchHHHHHH-hcCCceEEeC
Q 043397 478 HMLYAAADIVLVPSIY-EPCGLAQMIGM-RYGAVPVVRK 514 (596)
Q Consensus 478 ~~~~a~aDi~l~PS~~-E~~gl~~lEAm-a~G~pvI~s~ 514 (596)
..+...+|++-++|+. +. ..+++++ ..|+||+.+.
T Consensus 101 ~~l~~~vd~~kIga~~~~n--~~ll~~~a~~~kPV~lk~ 137 (262)
T 1zco_A 101 ELVAKYSDILQIGARNSQN--FELLKEVGKVENPVLLKR 137 (262)
T ss_dssp HHHHHHCSEEEECGGGTTC--HHHHHHHTTSSSCEEEEC
T ss_pred HHHHhhCCEEEECcccccC--HHHHHHHHhcCCcEEEec
Confidence 5555558999999975 44 3344444 4799999864
No 345
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Probab=29.23 E-value=36 Score=31.89 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=24.6
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
++|||.+|. .+.+-..+++.|.+.||+|.++..
T Consensus 2 ~~m~i~iiG-----------~G~mG~~~a~~l~~~g~~v~~~~~ 34 (259)
T 2ahr_A 2 NAMKIGIIG-----------VGKMASAIIKGLKQTPHELIISGS 34 (259)
T ss_dssp -CCEEEEEC-----------CSHHHHHHHHHHTTSSCEEEEECS
T ss_pred CccEEEEEC-----------CCHHHHHHHHHHHhCCCeEEEECC
Confidence 468999883 255556788999999999987754
No 346
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=29.22 E-value=1.9e+02 Score=22.07 Aligned_cols=105 Identities=10% Similarity=0.102 Sum_probs=60.2
Q ss_pred EEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCC-CCCchHHHHHHh---cCCce
Q 043397 437 QMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIY-EPCGLAQMIGMR---YGAVP 510 (596)
Q Consensus 437 ~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~-E~~gl~~lEAma---~G~pv 510 (596)
+++|+.+. ......+....++.+. .|. ..-+.++....+.. .|++++-... +.-|+.+++.+. ..+|+
T Consensus 3 ~ilivdd~--~~~~~~l~~~l~~~~~--~v~--~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~i 76 (116)
T 3a10_A 3 RILVVDDE--PNIRELLKEELQEEGY--EID--TAENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKI 76 (116)
T ss_dssp EEEEECSC--HHHHHHHHHHHHHTTC--EEE--EESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCE
T ss_pred EEEEEeCC--HHHHHHHHHHHHHCCC--EEE--EeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeE
Confidence 45666651 2334455555555432 233 33444555555543 5787765443 345666666653 35666
Q ss_pred EE-eCCCCc-cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHH
Q 043397 511 VV-RKTGGL-ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAF 555 (596)
Q Consensus 511 I~-s~~gg~-~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll 555 (596)
|. +..... .+.... +..+++..|.+.++|..+|.+++
T Consensus 77 i~~s~~~~~~~~~~~~--------g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 77 ILLTAYSHYRSDMSSW--------AADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp EEEESCGGGGGCGGGG--------GSSEEEECCSSTHHHHHHHHHHT
T ss_pred EEEECCcchHHHHHhc--------cccceEECCCCHHHHHHHHHHHh
Confidence 65 443322 222222 67899999999999999988764
No 347
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=29.19 E-value=1.9e+02 Score=28.59 Aligned_cols=93 Identities=6% Similarity=0.037 Sum_probs=57.8
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh-
Q 043397 405 TVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA- 483 (596)
Q Consensus 405 ~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~- 483 (596)
++..|+.+|-= .-+...++.++. .++++++-+-+ ...+..++.+++++.. .. +++ +.++++.
T Consensus 25 ~~irvgiiG~G--~~~~~~~~~~~~---~~~~~lvav~d----~~~~~a~~~a~~~~~~---~~---~~~--~~~ll~~~ 87 (361)
T 3u3x_A 25 DELRFAAVGLN--HNHIYGQVNCLL---RAGARLAGFHE----KDDALAAEFSAVYADA---RR---IAT--AEEILEDE 87 (361)
T ss_dssp -CCEEEEECCC--STTHHHHHHHHH---HTTCEEEEEEC----SCHHHHHHHHHHSSSC---CE---ESC--HHHHHTCT
T ss_pred cCcEEEEECcC--HHHHHHHHHHhh---cCCcEEEEEEc----CCHHHHHHHHHHcCCC---cc---cCC--HHHHhcCC
Confidence 35677888841 224444555553 37888887776 3456677788887631 11 223 4556665
Q ss_pred -CCEEEEcCCCCCCchHHHHHHhcCCceEEeC
Q 043397 484 -ADIVLVPSIYEPCGLAQMIGMRYGAVPVVRK 514 (596)
Q Consensus 484 -aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~ 514 (596)
.|++++.+....-.-.+.+|+..|++|++=+
T Consensus 88 ~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EK 119 (361)
T 3u3x_A 88 NIGLIVSAAVSSERAELAIRAMQHGKDVLVDK 119 (361)
T ss_dssp TCCEEEECCCHHHHHHHHHHHHHTTCEEEEES
T ss_pred CCCEEEEeCChHHHHHHHHHHHHCCCeEEEeC
Confidence 7999887654332335678999999999843
No 348
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=29.14 E-value=43 Score=31.58 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=24.4
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
.|+++|| ||.+-.-..+++.|+++|++|.++.
T Consensus 25 ~k~vlIT---------Gas~gIG~~~a~~l~~~G~~v~~~~ 56 (269)
T 3gk3_A 25 KRVAFVT---------GGMGGLGAAISRRLHDAGMAVAVSH 56 (269)
T ss_dssp CCEEEET---------TTTSHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCEEEEE---------CCCchHHHHHHHHHHHCCCEEEEEc
Confidence 4677776 4444455588999999999998886
No 349
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=29.07 E-value=43 Score=32.67 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=23.0
Q ss_pred CCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEE
Q 043397 106 SNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIM 148 (596)
Q Consensus 106 ~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi 148 (596)
..+|||+++. . |.+-..++..|++.||+|+++
T Consensus 17 ~~~~kI~IiG--------a---Ga~G~~~a~~L~~~G~~V~l~ 48 (318)
T 3hwr_A 17 FQGMKVAIMG--------A---GAVGCYYGGMLARAGHEVILI 48 (318)
T ss_dssp ---CEEEEES--------C---SHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCcEEEEC--------c---CHHHHHHHHHHHHCCCeEEEE
Confidence 3568999983 2 444457888899999999998
No 350
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=29.01 E-value=32 Score=33.17 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=25.0
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
++|||.+|. .+.+-..+++.|.+.||+|.++...
T Consensus 2 ~m~~I~iiG-----------~G~mG~~~a~~l~~~G~~V~~~d~~ 35 (302)
T 2h78_A 2 HMKQIAFIG-----------LGHMGAPMATNLLKAGYLLNVFDLV 35 (302)
T ss_dssp -CCEEEEEC-----------CSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCEEEEEe-----------ecHHHHHHHHHHHhCCCeEEEEcCC
Confidence 468999983 2344457889999999999988643
No 351
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=28.93 E-value=44 Score=32.64 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=24.3
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+|||+++. .|.++ ..++..|++.||+|+++...
T Consensus 2 ~mkI~IiG--------aGaiG---~~~a~~L~~~g~~V~~~~r~ 34 (320)
T 3i83_A 2 SLNILVIG--------TGAIG---SFYGALLAKTGHCVSVVSRS 34 (320)
T ss_dssp -CEEEEES--------CCHHH---HHHHHHHHHTTCEEEEECST
T ss_pred CCEEEEEC--------cCHHH---HHHHHHHHhCCCeEEEEeCC
Confidence 48999983 24444 46788889999999999854
No 352
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=28.71 E-value=49 Score=30.18 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=20.8
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||.+..-..+++.|.++|++|.++...
T Consensus 12 GasggiG~~~a~~l~~~G~~V~~~~r~ 38 (234)
T 2ehd_A 12 GASRGIGEATARLLHAKGYRVGLMARD 38 (234)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 555555568999999999999888643
No 353
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=28.70 E-value=54 Score=31.26 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=25.3
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
|||.+|. .+.+-..+++.|.+.||+|.++...
T Consensus 2 ~~i~iIG-----------~G~mG~~~a~~l~~~G~~V~~~dr~ 33 (287)
T 3pef_A 2 QKFGFIG-----------LGIMGSAMAKNLVKAGCSVTIWNRS 33 (287)
T ss_dssp CEEEEEC-----------CSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CEEEEEe-----------ecHHHHHHHHHHHHCCCeEEEEcCC
Confidence 7888882 3566678899999999999988644
No 354
>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2
Probab=28.64 E-value=45 Score=32.92 Aligned_cols=26 Identities=27% Similarity=0.179 Sum_probs=20.8
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+..-..+++.|.++||+|.++..
T Consensus 8 GatG~iG~~l~~~L~~~g~~V~~~~r 33 (372)
T 1db3_A 8 GVTGQDGSYLAEFLLEKGYEVHGIKR 33 (372)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEEC
Confidence 55556666889999999999998864
No 355
>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A
Probab=28.61 E-value=47 Score=31.67 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=21.0
Q ss_pred cCHHHHHhHHHHHHHhcC-CeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRG-HTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~G-h~V~vi~p~ 151 (596)
||.+..-..++++|.++| |+|.+++..
T Consensus 12 GatG~iG~~l~~~L~~~g~~~V~~~~R~ 39 (299)
T 2wm3_A 12 GGTGAQGGSVARTLLEDGTFKVRVVTRN 39 (299)
T ss_dssp TTTSHHHHHHHHHHHHHCSSEEEEEESC
T ss_pred CCCchHHHHHHHHHHhcCCceEEEEEcC
Confidence 555555567889999999 999999854
No 356
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Probab=28.59 E-value=74 Score=30.13 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=24.1
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
|+++|| ||.+-.-..+++.|+++|++|.++...
T Consensus 30 k~vlVT---------Gas~gIG~~ia~~l~~~G~~V~~~~r~ 62 (283)
T 1g0o_A 30 KVALVT---------GAGRGIGREMAMELGRRGCKVIVNYAN 62 (283)
T ss_dssp CEEEET---------TTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEe---------CCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 566775 444444457899999999999887643
No 357
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=28.51 E-value=66 Score=29.96 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=27.7
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||++.|+..- ..-|-.+.+.+||.+|+++|++|.++=..
T Consensus 2 ~~~I~v~s~k----gGvGKTt~a~~LA~~la~~g~~VlliD~D 40 (263)
T 1hyq_A 2 VRTITVASGK----GGTGKTTITANLGVALAQLGHDVTIVDAD 40 (263)
T ss_dssp CEEEEEEESS----SCSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCC----CCCCHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 4666665321 11255678899999999999999998643
No 358
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=28.11 E-value=2.1e+02 Score=28.15 Aligned_cols=104 Identities=14% Similarity=0.037 Sum_probs=0.0
Q ss_pred eeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHHcCCE
Q 043397 358 ILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQ 437 (596)
Q Consensus 358 I~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~ 437 (596)
|-||-| ....|. .-..+--.+++.+|- -+...|+|+|-+ ..=...++.++.++ +++
T Consensus 150 VINag~-~~~HPt---------------QaLaDl~TI~E~~G~---l~glkva~vGD~--~nva~Sl~~~~~~~---G~~ 205 (340)
T 4ep1_A 150 VINGLT-DDHHPC---------------QALADLMTIYEETNT---FKGIKLAYVGDG--NNVCHSLLLASAKV---GMH 205 (340)
T ss_dssp EEEEEC-SSCCHH---------------HHHHHHHHHHHHHSC---CTTCEEEEESCC--CHHHHHHHHHHHHH---TCE
T ss_pred EEeCCC-CCCCcH---------------HHHHHHHHHHHHhCC---CCCCEEEEECCC--chhHHHHHHHHHHc---CCE
Q ss_pred EEEEecC---CCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCC
Q 043397 438 MILLGNS---PVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSI 492 (596)
Q Consensus 438 lvIvG~~---~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~ 492 (596)
+.++|.. .+....+..++.+++.|.. +.+.....+ .++.||++.....
T Consensus 206 v~~~~P~~~~~~~~~~~~~~~~a~~~G~~--v~~~~d~~e-----av~~aDVvyt~~w 256 (340)
T 4ep1_A 206 MTVATPVGYRPNEEIVKKALAIAKETGAE--IEILHNPEL-----AVNEADFIYTDVW 256 (340)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHHHHHCCC--EEEESCHHH-----HHTTCSEEEECCC
T ss_pred EEEECCcccCCCHHHHHHHHHHHHHcCCe--EEEECCHHH-----HhCCCCEEEecCc
No 359
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*
Probab=28.07 E-value=46 Score=32.52 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=20.4
Q ss_pred cCHHHHHhHHHHHHHhc--CCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSR--GHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~--Gh~V~vi~p 150 (596)
||.+..-..++++|.++ ||+|.++..
T Consensus 11 GatG~iG~~l~~~L~~~~~g~~V~~~~r 38 (348)
T 1oc2_A 11 GGAGFIGSNFVHYVYNNHPDVHVTVLDK 38 (348)
T ss_dssp TTTSHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred CCccHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 55566666889999998 899998864
No 360
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=28.03 E-value=51 Score=30.61 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=19.6
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+-.-..+++.|+++|++|.++..
T Consensus 9 Gas~gIG~~ia~~l~~~G~~V~~~~r 34 (247)
T 3dii_A 9 GGGHGIGKQICLDFLEAGDKVCFIDI 34 (247)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 44444445789999999999988764
No 361
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=27.83 E-value=53 Score=30.82 Aligned_cols=40 Identities=23% Similarity=0.140 Sum_probs=27.7
Q ss_pred CCCceeEEEEeecccccccccC--HHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 105 DSNLMHIIHITAEMAPIAKVGG--LGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 105 ~~~~mkIl~is~~~~P~~~~GG--~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
..++|||+.|+.. .|| -.+.+.+||.+|+ +|++|.++=..
T Consensus 23 ~~~~~~vI~v~s~------kGGvGKTT~a~~LA~~la-~g~~VlliD~D 64 (267)
T 3k9g_A 23 DNKKPKIITIASI------KGGVGKSTSAIILATLLS-KNNKVLLIDMD 64 (267)
T ss_dssp ---CCEEEEECCS------SSSSCHHHHHHHHHHHHT-TTSCEEEEEEC
T ss_pred CCCCCeEEEEEeC------CCCchHHHHHHHHHHHHH-CCCCEEEEECC
Confidence 3456787777532 354 4578889999999 99999998643
No 362
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=27.77 E-value=76 Score=32.59 Aligned_cols=45 Identities=9% Similarity=0.048 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 043397 541 GIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIMEN--DNSWNNAAGKYMEIY 590 (596)
Q Consensus 541 ~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~--~fs~~~~~~~~~~iy 590 (596)
.+|..+|.+.+.+.++ .+.-+++.++..+. .|+.+.+.+++.++=
T Consensus 295 ~gd~~~l~e~~~~~~~-----~~~~~~~~~k~~~g~~~f~~~d~~~q~~~~~ 341 (433)
T 3kl4_A 295 MGDIESILEKVKGLEE-----YDKIQKKMEDVMEGKGKLTLRDVYAQIIALR 341 (433)
T ss_dssp SSHHHHHHHHHHHC------------------------CCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhhh-----HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 3455566666665553 23334555555554 899999999887764
No 363
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=27.77 E-value=22 Score=19.72 Aligned_cols=18 Identities=50% Similarity=0.728 Sum_probs=10.9
Q ss_pred cccccccccccceeeceecccC
Q 043397 31 ANHNMFYSSKSMISLPILAHTN 52 (596)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~ 52 (596)
|.|||| |.---||.-+.|
T Consensus 5 ahhnmf----svppppi~gr~n 22 (26)
T 2bn5_B 5 AHHNMF----SVPPPPILGRGX 22 (26)
T ss_dssp CCCCCC----SCCCCSCCCCC-
T ss_pred ccCcee----cCCCCCcccCCc
Confidence 679998 444455655544
No 364
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=27.77 E-value=2.1e+02 Score=27.42 Aligned_cols=110 Identities=5% Similarity=0.022 Sum_probs=64.3
Q ss_pred ccEEEEEecccccCCHHHHHHHH-HHHHHcCCEEEEEecCCCC--cchHHHHHHHHHcCCCCcEEEEec-----cCHHHH
Q 043397 406 VPLVVCITRLVAQKGLHLITHAI-KRAEELGGQMILLGNSPVH--WVQKDFEDLANLHNKGTSTRILLM-----YSEELS 477 (596)
Q Consensus 406 ~~~il~iGrl~~~KGi~~ll~A~-~~l~~~~~~lvIvG~~~~g--~~~~~l~~~~~~~~~~~~V~~~g~-----~~~~~l 477 (596)
..+++.-|..... +-..+++.+ +....++.+++++..+... .+.+.+.+..+++|.. .|..+.- .+++++
T Consensus 27 g~l~iiGGgedk~-~~~~i~~~~v~lagg~~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~-~v~~L~i~~r~~a~~~~~ 104 (291)
T 3en0_A 27 PAILIIGGAEDKV-HGREILQTFWSRSGGNDAIIGIIPSASREPLLIGERYQTIFSDMGVK-ELKVLDIRDRAQGDDSGY 104 (291)
T ss_dssp CCEEEECSSCCSS-SCCHHHHHHHHHTTGGGCEEEEECTTCSSHHHHHHHHHHHHHHHCCS-EEEECCCCSGGGGGCHHH
T ss_pred ceEEEEECCCCcc-ChHHHHHHHHHHcCCCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCC-eeEEEEecCccccCCHHH
Confidence 3444444444432 333444444 3333345688888763211 2345566666777762 4555533 456677
Q ss_pred HHHHHhCCEEEEcC--------CCCCCch--HHHHHHhcC-CceEEeCCCC
Q 043397 478 HMLYAAADIVLVPS--------IYEPCGL--AQMIGMRYG-AVPVVRKTGG 517 (596)
Q Consensus 478 ~~~~a~aDi~l~PS--------~~E~~gl--~~lEAma~G-~pvI~s~~gg 517 (596)
.+.+..||+++++- .+...++ .+-|+...| +|++.+..|.
T Consensus 105 ~~~l~~ad~I~v~GGnt~~l~~~l~~t~l~~~L~~~~~~G~~~~~GtSAGA 155 (291)
T 3en0_A 105 RLFVEQCTGIFMTGGDQLRLCGLLADTPLMDRIRQRVHNGEISLAGTSAGA 155 (291)
T ss_dssp HHHHHHCSEEEECCSCHHHHHHHHTTCHHHHHHHHHHHTTSSEEEEETHHH
T ss_pred HHHHhcCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCeEEEEeCHHH
Confidence 88999999999873 1233343 466778899 8888777664
No 365
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=27.74 E-value=2e+02 Score=24.93 Aligned_cols=66 Identities=12% Similarity=0.022 Sum_probs=41.5
Q ss_pred hCCEEEEcCCCCCC-chHHHHHHh---cCCceEE-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHH
Q 043397 483 AADIVLVPSIYEPC-GLAQMIGMR---YGAVPVV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRA 554 (596)
Q Consensus 483 ~aDi~l~PS~~E~~-gl~~lEAma---~G~pvI~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~l 554 (596)
..|++++-....+. |+ +.+.+. ..+|+|. |..+.. .+.+.. |..+|+..|.+.++|...|..+
T Consensus 52 ~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii~lt~~~~~~~~~~a~~~--------ga~~~l~KP~~~~~L~~~l~~~ 122 (196)
T 1qo0_D 52 PVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLVALVEYESPAVLSQIIEL--------ECHGVITQPLDAHRVLPVLVSA 122 (196)
T ss_dssp CCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEEEEECCCSHHHHHHHHHH--------TCSEEEESSCCGGGHHHHHHHH
T ss_pred CCCEEEEeCCCCccchH-HHHHHhccCCCCCEEEEEcCCChHHHHHHHHc--------CCCeeEecCcCHHHHHHHHHHH
Confidence 46777765443222 44 444443 4567775 444332 222333 6789999999999999999888
Q ss_pred HHh
Q 043397 555 FRH 557 (596)
Q Consensus 555 l~~ 557 (596)
+..
T Consensus 123 ~~~ 125 (196)
T 1qo0_D 123 RRI 125 (196)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 366
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*
Probab=27.64 E-value=49 Score=32.79 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=25.1
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
.|+|+++ ||.+..-..++++|.++||+|.+++..
T Consensus 5 ~~~ilVt----------GatG~iG~~l~~~L~~~g~~V~~~~R~ 38 (352)
T 1xgk_A 5 KKTIAVV----------GATGRQGASLIRVAAAVGHHVRAQVHS 38 (352)
T ss_dssp CCCEEEE----------STTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEE----------CCCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 3677665 555555567889999999999998743
No 367
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=27.58 E-value=48 Score=33.11 Aligned_cols=33 Identities=27% Similarity=0.274 Sum_probs=26.2
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
.|||.+| |.+.+-..+++.|.+.||+|.++...
T Consensus 22 ~mkIgiI-----------GlG~mG~~~A~~L~~~G~~V~v~dr~ 54 (358)
T 4e21_A 22 SMQIGMI-----------GLGRMGADMVRRLRKGGHECVVYDLN 54 (358)
T ss_dssp CCEEEEE-----------CCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCEEEEE-----------CchHHHHHHHHHHHhCCCEEEEEeCC
Confidence 3789988 23666678999999999999998643
No 368
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=27.49 E-value=1.1e+02 Score=27.60 Aligned_cols=108 Identities=11% Similarity=0.097 Sum_probs=63.9
Q ss_pred CEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--hCCEEEEcCCC-CCCchHHHHHHh--cCCce
Q 043397 436 GQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--AADIVLVPSIY-EPCGLAQMIGMR--YGAVP 510 (596)
Q Consensus 436 ~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~aDi~l~PS~~-E~~gl~~lEAma--~G~pv 510 (596)
.+++|+.+. ....+.+....+..+. .|. ..-+.++....+. ..|++++-... +.-|+.+++.+. ..+|+
T Consensus 5 ~~ilivdd~--~~~~~~l~~~L~~~g~--~v~--~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~i 78 (230)
T 2oqr_A 5 TSVLIVEDE--ESLADPLAFLLRKEGF--EAT--VVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPV 78 (230)
T ss_dssp CEEEEECSC--HHHHHHHHHHHHHTTC--EEE--EECSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHHCSCSE
T ss_pred CeEEEEeCC--HHHHHHHHHHHHHCCC--EEE--EECCHHHHHHHHhccCCCEEEEECCCCCCCHHHHHHHHHcCCCCCE
Confidence 466777661 2334455555554432 233 3344444555543 46888775443 445666666554 36777
Q ss_pred EE-eCCCCc---cccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHh
Q 043397 511 VV-RKTGGL---ADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRH 557 (596)
Q Consensus 511 I~-s~~gg~---~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 557 (596)
|. +..... .+.+.. |..|++..|.++++|..+|..++..
T Consensus 79 i~lt~~~~~~~~~~~~~~--------ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 79 IMVTARDSEIDKVVGLEL--------GADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp EEEECCHHHHHHHHHHHH--------CCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred EEEeCCCcHHHHHHHHHc--------CCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 76 333322 222333 6789999999999999999998863
No 369
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=27.44 E-value=2.4e+02 Score=27.65 Aligned_cols=105 Identities=14% Similarity=0.073 Sum_probs=0.0
Q ss_pred eeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhh-cC-CCCCCCccEEEEEecccccCCHHHHHHHHHHHHHcC
Q 043397 358 ILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKG-LG-LKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELG 435 (596)
Q Consensus 358 I~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~-l~-l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~ 435 (596)
|-||-+ +...|. .-..+--.+++. +| - -+...|.|+|-. ...=...++.++.++ +
T Consensus 124 VINa~~-~~~HPt---------------Q~LaDl~Ti~e~~~g~~---l~gl~ia~vGD~-~~~va~Sl~~~~~~~---G 180 (333)
T 1duv_G 124 VWNGLT-NEFHPT---------------QLLADLLTMQEHLPGKA---FNEMTLVYAGDA-RNNMGNSMLEAAALT---G 180 (333)
T ss_dssp EEESCC-SSCCHH---------------HHHHHHHHHHHHSTTCC---GGGCEEEEESCT-TSHHHHHHHHHHHHH---C
T ss_pred eEcCCC-CCCCch---------------HHHHHHHHHHHHhcCCC---CCCcEEEEECCC-ccchHHHHHHHHHHc---C
Q ss_pred CEEEEEecC---CCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCC
Q 043397 436 GQMILLGNS---PVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSI 492 (596)
Q Consensus 436 ~~lvIvG~~---~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~ 492 (596)
+++.++|.. .+....+..++.+++.|. ++.+. +++.+.++.||++....+
T Consensus 181 ~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~--~v~~~-----~d~~eav~~aDvvytd~w 233 (333)
T 1duv_G 181 LDLRLVAPQACWPEAALVTECRALAQQNGG--NITLT-----EDVAKGVEGADFIYTDVW 233 (333)
T ss_dssp CEEEEECCGGGCCCHHHHHHHHHHHHHTTC--EEEEE-----SCHHHHHTTCSEEEECCS
T ss_pred CEEEEECCcccCCCHHHHHHHHHHHHHcCC--eEEEE-----ECHHHHhCCCCEEEeCCc
No 370
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=27.42 E-value=83 Score=28.73 Aligned_cols=35 Identities=11% Similarity=0.102 Sum_probs=25.5
Q ss_pred ceeEEEEeecccccccccCH-HHHHhHHHHHHHhcCCeEEEEec
Q 043397 108 LMHIIHITAEMAPIAKVGGL-GDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~-~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
++||++-. +|++ ...+.+|++.|.+.|++|.|+.+
T Consensus 4 ~k~Illgv--------TGaiaa~k~~~ll~~L~~~g~eV~vv~T 39 (209)
T 3zqu_A 4 PERITLAM--------TGASGAQYGLRLLDCLVQEEREVHFLIS 39 (209)
T ss_dssp CSEEEEEE--------CSSSCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEEE--------ECHHHHHHHHHHHHHHHHCCCEEEEEEC
Confidence 35776653 2332 45577899999999999998874
No 371
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=27.38 E-value=58 Score=29.50 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=24.9
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
..|||.++. .+.+-..++..|.+.||+|.++..
T Consensus 18 ~~~~I~iiG-----------~G~mG~~la~~l~~~g~~V~~~~~ 50 (209)
T 2raf_A 18 QGMEITIFG-----------KGNMGQAIGHNFEIAGHEVTYYGS 50 (209)
T ss_dssp --CEEEEEC-----------CSHHHHHHHHHHHHTTCEEEEECT
T ss_pred CCCEEEEEC-----------CCHHHHHHHHHHHHCCCEEEEEcC
Confidence 458999882 356667889999999999998853
No 372
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Probab=27.16 E-value=51 Score=30.71 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=24.6
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHh-cCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLS-RGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~-~Gh~V~vi~p~ 151 (596)
+|+++|| ||.+-.-..+++.|++ .|++|.++...
T Consensus 4 ~k~vlIT---------GasggIG~~~a~~L~~~~g~~V~~~~r~ 38 (276)
T 1wma_A 4 IHVALVT---------GGNKGIGLAIVRDLCRLFSGDVVLTARD 38 (276)
T ss_dssp CCEEEES---------SCSSHHHHHHHHHHHHHSSSEEEEEESS
T ss_pred CCEEEEe---------CCCcHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 4666665 4445555578999999 99999988743
No 373
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=27.14 E-value=57 Score=30.10 Aligned_cols=27 Identities=22% Similarity=0.152 Sum_probs=20.5
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||.+-.-..+++.|+++|++|.++...
T Consensus 21 Gas~gIG~~~a~~l~~~G~~V~~~~r~ 47 (249)
T 3f9i_A 21 GASSGIGSAIARLLHKLGSKVIISGSN 47 (249)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEcCC
Confidence 444445558899999999999988743
No 374
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=27.10 E-value=68 Score=29.50 Aligned_cols=42 Identities=10% Similarity=0.057 Sum_probs=26.3
Q ss_pred CceeEEEEeecccccccccCHHH-HHhHHHHHHHhc--CC-eEEEEe
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGD-VVTGLARACLSR--GH-TVDIML 149 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~-~~~~La~aL~~~--Gh-~V~vi~ 149 (596)
.+||||+|....-|. ..++... .+..+++.+.++ |+ +|+++-
T Consensus 3 ~MmkIL~I~gSpr~~-~~~S~s~~L~~~~~~~l~~~~~~~~ev~~id 48 (223)
T 3u7i_A 3 AMNKTLIINAHPKVD-DTSSVSIKVFKHFLESYKELISNNETIEQIN 48 (223)
T ss_dssp CCCEEEEEECCTTTT-CTTSHHHHHHHHHHHHHHHHCCSSCEEEEEE
T ss_pred ccCEEEEEEeCCCCC-CCCChHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 468999998654311 1355444 444566666665 68 898875
No 375
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=27.10 E-value=42 Score=33.49 Aligned_cols=34 Identities=21% Similarity=0.060 Sum_probs=26.8
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
.+|||.+|. .|.+-..++..|++.||+|.++...
T Consensus 28 ~~mkI~VIG-----------aG~mG~alA~~La~~G~~V~l~~r~ 61 (356)
T 3k96_A 28 FKHPIAILG-----------AGSWGTALALVLARKGQKVRLWSYE 61 (356)
T ss_dssp CCSCEEEEC-----------CSHHHHHHHHHHHTTTCCEEEECSC
T ss_pred cCCeEEEEC-----------ccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 468999983 2555668899999999999998753
No 376
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=27.03 E-value=50 Score=30.18 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=19.9
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+-.-..+++.|+++|++|.++..
T Consensus 9 GasggiG~~la~~l~~~G~~V~~~~r 34 (242)
T 1uay_A 9 GGASGLGRAAALALKARGYRVVVLDL 34 (242)
T ss_dssp TTTSHHHHHHHHHHHHHTCEEEEEES
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEcc
Confidence 44444555889999999999998863
No 377
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=27.00 E-value=48 Score=28.75 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=26.5
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
+|||+++- +. .+|....++..+++.|.+.|++|.++-
T Consensus 9 ~~ki~I~Y--~S---~tGnT~~~A~~ia~~l~~~g~~v~~~~ 45 (167)
T 1ykg_A 9 MPGITIIS--AS---QTGNARRVAEALRDDLLAAKLNVKLVN 45 (167)
T ss_dssp ---CEEEE--EC---SSSHHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred CCeEEEEE--EC---CchHHHHHHHHHHHHHHHCCCceEEee
Confidence 45666652 11 458889999999999999999988874
No 378
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=26.91 E-value=41 Score=30.95 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=26.3
Q ss_pred eeEEEEeecccccccccCH--HHHHhHHHHHHHhcCCeEEEEec
Q 043397 109 MHIIHITAEMAPIAKVGGL--GDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~--~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
|||++ +. .||. .+.+.+||.+|+++|++|.++=.
T Consensus 1 mkI~v-s~-------kGGvGKTt~a~~LA~~la~~g~~VlliD~ 36 (254)
T 3kjh_A 1 MKLAV-AG-------KGGVGKTTVAAGLIKIMASDYDKIYAVDG 36 (254)
T ss_dssp CEEEE-EC-------SSSHHHHHHHHHHHHHHTTTCSCEEEEEE
T ss_pred CEEEE-ec-------CCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 78887 52 3554 56778899999999999998853
No 379
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=26.87 E-value=49 Score=27.20 Aligned_cols=24 Identities=17% Similarity=0.082 Sum_probs=19.1
Q ss_pred HHHHhHHHHHHHhcCCeEEEEecc
Q 043397 128 GDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 128 ~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+..-..+++.|.+.|++|.++...
T Consensus 15 G~iG~~~a~~l~~~g~~v~~~d~~ 38 (144)
T 2hmt_A 15 GRFGGSIVKELHRMGHEVLAVDIN 38 (144)
T ss_dssp SHHHHHHHHHHHHTTCCCEEEESC
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 556667889999999999988643
No 380
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=26.83 E-value=55 Score=31.20 Aligned_cols=33 Identities=12% Similarity=0.160 Sum_probs=25.6
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
+|||.+| |..|.+-..+++.|.+.||+|.++..
T Consensus 11 mm~I~iI----------G~tG~mG~~la~~l~~~g~~V~~~~r 43 (286)
T 3c24_A 11 PKTVAIL----------GAGGKMGARITRKIHDSAHHLAAIEI 43 (286)
T ss_dssp CCEEEEE----------TTTSHHHHHHHHHHHHSSSEEEEECC
T ss_pred CCEEEEE----------CCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 4799988 33266667899999999999998764
No 381
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=26.82 E-value=58 Score=32.77 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=27.7
Q ss_pred ceeEEEEeecccccccccCHHH--HHhHHHHHHHhcCCeEEEEec
Q 043397 108 LMHIIHITAEMAPIAKVGGLGD--VVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~--~~~~La~aL~~~Gh~V~vi~p 150 (596)
+|+|++++ ..||.|. .+..+|.+++++|++|.++..
T Consensus 1 M~~i~~~~-------gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 1 MALILTFL-------GKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp -CEEEEEE-------CSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CcEEEEEe-------CCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 47888886 3466654 567799999999999999876
No 382
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=26.78 E-value=2.3e+02 Score=22.11 Aligned_cols=31 Identities=10% Similarity=0.075 Sum_probs=22.0
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEE
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIM 148 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi 148 (596)
++||+++... ......+.+.|.+.|++|..+
T Consensus 3 ~~~ilivdd~----------~~~~~~l~~~L~~~g~~v~~~ 33 (127)
T 3i42_A 3 LQQALIVEDY----------QAAAETFKELLEMLGFQADYV 33 (127)
T ss_dssp CEEEEEECSC----------HHHHHHHHHHHHHTTEEEEEE
T ss_pred cceEEEEcCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 4789988422 445567788888889877665
No 383
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A
Probab=26.64 E-value=57 Score=29.83 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=20.2
Q ss_pred cCHHHHHhHHHHHHHhcCC--eEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGH--TVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh--~V~vi~p~ 151 (596)
||.+..-..++++|.++|+ +|.++...
T Consensus 25 Gasg~iG~~l~~~L~~~G~~~~V~~~~r~ 53 (242)
T 2bka_A 25 GASGETGRVLLKEILEQGLFSKVTLIGRR 53 (242)
T ss_dssp CTTSHHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred CCCcHHHHHHHHHHHcCCCCCEEEEEEcC
Confidence 4444445578999999999 99988743
No 384
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=26.51 E-value=50 Score=29.84 Aligned_cols=75 Identities=13% Similarity=0.078 Sum_probs=43.5
Q ss_pred HHHHHHhCCEEEEcCCCCCCch--HHHHHHhcCCceEEeCCCC-ccccccccCC-C-CC-CCccceEEEeCCCHHHHHHH
Q 043397 477 SHMLYAAADIVLVPSIYEPCGL--AQMIGMRYGAVPVVRKTGG-LADTVFDVDD-P-SN-HEKANGFVFEGIDEGSLNWA 550 (596)
Q Consensus 477 l~~~~a~aDi~l~PS~~E~~gl--~~lEAma~G~pvI~s~~gg-~~e~i~~~~~-~-~~-~~~~~G~lv~~~d~~~la~~ 550 (596)
-..+...||.+|+-. -++|. .+.||+..|+|+++-+..| ..+.+...-. + .. .+...-+.+. .|++++.+.
T Consensus 112 k~~m~~~sda~Ivlp--GG~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~-~~~ee~~~~ 188 (195)
T 1rcu_A 112 SFVLLRNADVVVSIG--GEIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQA-WTVEEAVQI 188 (195)
T ss_dssp HHHHHTTCSEEEEES--CCHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEE-SSHHHHHHH
T ss_pred HHHHHHhCCEEEEec--CCCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEe-CCHHHHHHH
Confidence 445677889887542 23443 4788999999999986544 3333322111 0 11 1122334444 489998888
Q ss_pred HHHH
Q 043397 551 LDRA 554 (596)
Q Consensus 551 i~~l 554 (596)
|.++
T Consensus 189 l~~~ 192 (195)
T 1rcu_A 189 IEQI 192 (195)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 7654
No 385
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=26.33 E-value=32 Score=33.41 Aligned_cols=29 Identities=24% Similarity=0.309 Sum_probs=22.4
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
||.||. ++.+=..||+.|.+.||+|+++-
T Consensus 7 kIgfIG-----------LG~MG~~mA~~L~~~G~~V~v~d 35 (297)
T 4gbj_A 7 KIAFLG-----------LGNLGTPIAEILLEAGYELVVWN 35 (297)
T ss_dssp EEEEEC-----------CSTTHHHHHHHHHHTTCEEEEC-
T ss_pred cEEEEe-----------cHHHHHHHHHHHHHCCCeEEEEe
Confidence 788883 34555689999999999999874
No 386
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=26.28 E-value=41 Score=33.37 Aligned_cols=31 Identities=23% Similarity=0.153 Sum_probs=24.1
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCC-eEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGH-TVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh-~V~vi~ 149 (596)
|||+++ ||.+..-..+++.|.++|| +|..+.
T Consensus 1 M~VlVt----------GatG~iG~~l~~~L~~~g~~~v~~~d 32 (369)
T 3st7_A 1 MNIVIT----------GAKGFVGKNLKADLTSTTDHHIFEVH 32 (369)
T ss_dssp CEEEEE----------TTTSHHHHHHHHHHHHHCCCEEEECC
T ss_pred CEEEEE----------CCCCHHHHHHHHHHHhCCCCEEEEEC
Confidence 787765 6666666788999999999 887764
No 387
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=26.17 E-value=61 Score=30.33 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=24.6
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
|+++|| ||.+-.-..+++.|+++|++|.++...
T Consensus 30 k~vlIT---------Gas~gIG~~la~~l~~~G~~V~~~~r~ 62 (262)
T 3rkr_A 30 QVAVVT---------GASRGIGAAIARKLGSLGARVVLTARD 62 (262)
T ss_dssp CEEEES---------STTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEE---------CCCChHHHHHHHHHHHCCCEEEEEECC
Confidence 567775 554555568899999999999888643
No 388
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Probab=26.01 E-value=47 Score=32.41 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=23.9
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
|||.+|. .|.+-..++..|.+.||+|+++..
T Consensus 1 m~I~iiG-----------~G~mG~~~a~~L~~~g~~V~~~~r 31 (335)
T 1txg_A 1 MIVSILG-----------AGAMGSALSVPLVDNGNEVRIWGT 31 (335)
T ss_dssp CEEEEES-----------CCHHHHHHHHHHHHHCCEEEEECC
T ss_pred CEEEEEC-----------cCHHHHHHHHHHHhCCCeEEEEEc
Confidence 6888872 245556788999999999999875
No 389
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=25.88 E-value=3.9e+02 Score=24.58 Aligned_cols=60 Identities=10% Similarity=0.065 Sum_probs=33.1
Q ss_pred EEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCC--CcEEEEeccCH
Q 043397 410 VCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKG--TSTRILLMYSE 474 (596)
Q Consensus 410 l~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~--~~V~~~g~~~~ 474 (596)
+..+......+.+.+.+.+.+ .++...+++.+ ......+.+.+++.|+. ++|.+.|+-+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~l~~--~~~~~ai~~~~---d~~a~g~~~al~~~g~~vP~di~vvg~d~~ 224 (291)
T 3egc_A 163 IAAGGVRADNGRDGAIKVLTG--ADRPTALLTSS---HRITEGAMQALNVLGLRYGPDVEIVSFDNL 224 (291)
T ss_dssp EEC------CCHHHHHHHHTC---CCCSEEEESS---HHHHHHHHHHHHHHTCCBTTTBEEEEESCC
T ss_pred eEeCCCChhHHHHHHHHHHhC--CCCCcEEEECC---cHHHHHHHHHHHHcCCCCCCceEEEEecCc
Confidence 334666777777666555532 25677777776 44444555666677765 57888887554
No 390
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=25.72 E-value=1.1e+02 Score=28.25 Aligned_cols=92 Identities=11% Similarity=0.051 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecCC-CC---cchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCC--
Q 043397 421 LHLITHAIKRAEELGGQMILLGNSP-VH---WVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYE-- 494 (596)
Q Consensus 421 i~~ll~A~~~l~~~~~~lvIvG~~~-~g---~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E-- 494 (596)
++.+.++++.+.+.+.+++|+-... .+ .+...+.+..+++|. .+..+...++ ..+.+..||.+++|- -+
T Consensus 17 l~~~~~~l~~~~~~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~--~~~~v~~~~d--~~~~l~~ad~I~lpG-G~~~ 91 (229)
T 1fy2_A 17 LEHALPLIANQLNGRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGV--NVTGIHRVAD--PLAAIEKAEIIIVGG-GNTF 91 (229)
T ss_dssp TTTTHHHHHHHHTTCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTC--EEEETTSSSC--HHHHHHHCSEEEECC-SCHH
T ss_pred HHHHHHHHHHHhcCCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCC--EEEEEecccc--HHHHHhcCCEEEECC-CcHH
Confidence 4444666666655557888886521 12 233344555556664 3444332233 446788999999994 21
Q ss_pred -------CCch--HHHHHHhcCCceEEeCCCC
Q 043397 495 -------PCGL--AQMIGMRYGAVPVVRKTGG 517 (596)
Q Consensus 495 -------~~gl--~~lEAma~G~pvI~s~~gg 517 (596)
..|+ .+-|+...|+|++.+..|.
T Consensus 92 ~~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG~ 123 (229)
T 1fy2_A 92 QLLKESRERGLLAPMADRVKRGALYIGWSAGA 123 (229)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCEEEEETHHH
T ss_pred HHHHHHHHCChHHHHHHHHHcCCEEEEECHHH
Confidence 1222 4567778899999877664
No 391
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=25.70 E-value=82 Score=30.35 Aligned_cols=42 Identities=21% Similarity=0.124 Sum_probs=31.3
Q ss_pred CCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 106 SNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 106 ~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
.+.+||+.|+..- | .-|-...+.+||.+|++.|.+|.++-..
T Consensus 101 ~~~~kvI~vts~k-g---G~GKTtva~nLA~~lA~~G~rVLLID~D 142 (299)
T 3cio_A 101 ETENNILMITGAT-P---DSGKTFVSSTLAAVIAQSDQKVLFIDAD 142 (299)
T ss_dssp SCSCCEEEEEESS-S---SSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCeEEEEECCC-C---CCChHHHHHHHHHHHHhCCCcEEEEECC
Confidence 3457888876533 1 2356788999999999999999998643
No 392
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=25.70 E-value=4.1e+02 Score=26.54 Aligned_cols=100 Identities=8% Similarity=-0.000 Sum_probs=66.9
Q ss_pred EEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecC--------CCC---cchHHHHHHHHHcCCCCcEEEEeccCHHHH
Q 043397 409 VVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNS--------PVH---WVQKDFEDLANLHNKGTSTRILLMYSEELS 477 (596)
Q Consensus 409 il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~--------~~g---~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l 477 (596)
++.+|-.+.. ..+..++.++.+++.+..++..|.- ..| .....+.+.+++.|+ ..+....+.+.+
T Consensus 144 ~~Iigpcsve-s~e~a~~~a~~~k~aGa~~vk~q~fkprts~~~f~gl~~egl~~L~~~~~~~Gl---~~~te~~d~~~~ 219 (385)
T 3nvt_A 144 VFVFGPCSVE-SYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSDEYGL---GVISEIVTPADI 219 (385)
T ss_dssp EEEEECSBCC-CHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTC---EEEEECCSGGGH
T ss_pred EEEEEeCCcC-CHHHHHHHHHHHHHcCCCeEEcccccCCCChHhhcCCCHHHHHHHHHHHHHcCC---EEEEecCCHHHH
Confidence 4556655544 8888999998888878888777741 001 123455566667776 455566666666
Q ss_pred HHHHHhCCEEEEcCCC-CCCchHHH-HHHhcCCceEEeC
Q 043397 478 HMLYAAADIVLVPSIY-EPCGLAQM-IGMRYGAVPVVRK 514 (596)
Q Consensus 478 ~~~~a~aDi~l~PS~~-E~~gl~~l-EAma~G~pvI~s~ 514 (596)
..+...+|++=+||.. ..+ .++ ++-..|+||+.+.
T Consensus 220 ~~l~~~vd~lkIgs~~~~n~--~LL~~~a~~gkPVilk~ 256 (385)
T 3nvt_A 220 EVALDYVDVIQIGARNMQNF--ELLKAAGRVDKPILLKR 256 (385)
T ss_dssp HHHTTTCSEEEECGGGTTCH--HHHHHHHTSSSCEEEEC
T ss_pred HHHHhhCCEEEECcccccCH--HHHHHHHccCCcEEEec
Confidence 6666669999999975 554 444 3557899999865
No 393
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=25.55 E-value=77 Score=31.62 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=26.3
Q ss_pred CCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 106 SNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 106 ~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+++|||+++. +| .....+++++.++|++|.++.+.
T Consensus 9 ~~~~~ili~g---------~g--~~~~~~~~a~~~~G~~v~~~~~~ 43 (391)
T 1kjq_A 9 PAATRVMLLG---------SG--ELGKEVAIECQRLGVEVIAVDRY 43 (391)
T ss_dssp TTCCEEEEES---------CS--HHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCEEEEEC---------CC--HHHHHHHHHHHHcCCEEEEEECC
Confidence 4568999983 22 34567899999999999888754
No 394
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}
Probab=25.54 E-value=55 Score=31.68 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=23.9
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcC--CeEEEEec
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRG--HTVDIMLP 150 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~G--h~V~vi~p 150 (596)
.|||++. ||.+..-..+++.|.++| |+|.++..
T Consensus 3 ~m~vlVT----------GatG~iG~~l~~~L~~~g~~~~V~~~~r 37 (336)
T 2hun_A 3 SMKLLVT----------GGMGFIGSNFIRYILEKHPDWEVINIDK 37 (336)
T ss_dssp CCEEEEE----------TTTSHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred CCeEEEE----------CCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 3787655 555555667889999987 88888763
No 395
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=25.52 E-value=47 Score=32.28 Aligned_cols=41 Identities=2% Similarity=-0.209 Sum_probs=27.3
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
.+|||+++....... ..-.-.....++++|.+.||+|.++-
T Consensus 12 ~~~~v~vl~gg~s~E--~~vsl~s~~~v~~al~~~g~~v~~i~ 52 (317)
T 4eg0_A 12 RFGKVAVLFGGESAE--REVSLTSGRLVLQGLRDAGIDAHPFD 52 (317)
T ss_dssp GGCEEEEECCCSSTT--HHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred hcceEEEEECCCCCc--ceeeHHHHHHHHHHHHHCCCEEEEEe
Confidence 467899996432221 00111246789999999999999986
No 396
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*
Probab=25.51 E-value=61 Score=29.84 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=19.6
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+-.-..+++.|+++|++|.++..
T Consensus 14 Gas~gIG~~ia~~l~~~G~~V~~~~r 39 (241)
T 1dhr_A 14 GGRGALGSRCVQAFRARNWWVASIDV 39 (241)
T ss_dssp TTTSHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCcHHHHHHHHHHHhCCCEEEEEeC
Confidence 44444445789999999999988863
No 397
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=25.50 E-value=52 Score=32.25 Aligned_cols=34 Identities=12% Similarity=0.238 Sum_probs=23.4
Q ss_pred CCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 106 SNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 106 ~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
+++|||+|+.+ ..++....++|.+.||+|..+..
T Consensus 2 ~~mmrIvf~Gt-----------p~fa~~~L~~L~~~~~~v~~Vvt 35 (317)
T 3rfo_A 2 NAMIKVVFMGT-----------PDFSVPVLRRLIEDGYDVIGVVT 35 (317)
T ss_dssp CTTSEEEEECC-----------STTHHHHHHHHHHTTCEEEEEEC
T ss_pred CCceEEEEEeC-----------CHHHHHHHHHHHHCCCcEEEEEe
Confidence 46799999953 22344556778888999875553
No 398
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=25.45 E-value=2.2e+02 Score=27.63 Aligned_cols=94 Identities=11% Similarity=-0.003 Sum_probs=53.6
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--
Q 043397 405 TVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA-- 482 (596)
Q Consensus 405 ~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a-- 482 (596)
+...|+.+|-=. =| ..+++++.. ..++++++.+-+ ...+..++++++++.. .. +++ +.++++
T Consensus 7 ~~~~v~iiG~G~--ig-~~~~~~l~~-~~~~~~~vav~d----~~~~~~~~~a~~~g~~---~~---~~~--~~~~l~~~ 70 (346)
T 3cea_A 7 KPLRAAIIGLGR--LG-ERHARHLVN-KIQGVKLVAACA----LDSNQLEWAKNELGVE---TT---YTN--YKDMIDTE 70 (346)
T ss_dssp CCEEEEEECCST--TH-HHHHHHHHH-TCSSEEEEEEEC----SCHHHHHHHHHTTCCS---EE---ESC--HHHHHTTS
T ss_pred CcceEEEEcCCH--HH-HHHHHHHHh-cCCCcEEEEEec----CCHHHHHHHHHHhCCC---cc---cCC--HHHHhcCC
Confidence 445677777411 12 233444431 115677765555 2345666777776642 11 122 455665
Q ss_pred hCCEEEEcCCCCCCchHHHHHHhcCCceEEeC
Q 043397 483 AADIVLVPSIYEPCGLAQMIGMRYGAVPVVRK 514 (596)
Q Consensus 483 ~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~ 514 (596)
.+|+++..+....-.-.+.+|+..|++|++-+
T Consensus 71 ~~D~V~i~tp~~~h~~~~~~al~~G~~v~~eK 102 (346)
T 3cea_A 71 NIDAIFIVAPTPFHPEMTIYAMNAGLNVFCEK 102 (346)
T ss_dssp CCSEEEECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred CCCEEEEeCChHhHHHHHHHHHHCCCEEEEcC
Confidence 68999987765433445678899999998843
No 399
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=25.40 E-value=2.6e+02 Score=22.33 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=22.6
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
++||+++... ......+...|...|++|....
T Consensus 3 ~~~ilivdd~----------~~~~~~l~~~l~~~g~~v~~~~ 34 (143)
T 3jte_A 3 LAKILVIDDE----------STILQNIKFLLEIDGNEVLTAS 34 (143)
T ss_dssp CCEEEEECSC----------HHHHHHHHHHHHHTTCEEEEES
T ss_pred CCEEEEEcCC----------HHHHHHHHHHHHhCCceEEEeC
Confidence 4689988422 4556678888888998877553
No 400
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=25.31 E-value=73 Score=31.14 Aligned_cols=33 Identities=30% Similarity=0.240 Sum_probs=25.4
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
.++||.++ ..||.+.. .+|+.|.++|++|++.=
T Consensus 3 ~~~~i~~i--------GiGg~Gms--~~A~~L~~~G~~V~~~D 35 (326)
T 3eag_A 3 AMKHIHII--------GIGGTFMG--GLAAIAKEAGFEVSGCD 35 (326)
T ss_dssp CCCEEEEE--------SCCSHHHH--HHHHHHHHTTCEEEEEE
T ss_pred CCcEEEEE--------EECHHHHH--HHHHHHHhCCCEEEEEc
Confidence 35788888 45777753 57888999999999874
No 401
>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*
Probab=25.29 E-value=58 Score=30.54 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=24.5
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
|+++|| ||.+-.-..+++.|+++|++|.+++..
T Consensus 27 k~vlVT---------Gas~gIG~~la~~l~~~G~~v~i~~~r 59 (267)
T 4iiu_A 27 RSVLVT---------GASKGIGRAIARQLAADGFNIGVHYHR 59 (267)
T ss_dssp CEEEET---------TTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEE---------CCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 667775 554555568999999999999887643
No 402
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A
Probab=25.28 E-value=64 Score=29.66 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=20.2
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||.+-.-..+++.|+++|++|.++...
T Consensus 9 Gas~giG~~~a~~l~~~G~~V~~~~r~ 35 (239)
T 2ekp_A 9 GGSRGIGRAIAEALVARGYRVAIASRN 35 (239)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 444444458899999999999888643
No 403
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=25.27 E-value=70 Score=27.90 Aligned_cols=35 Identities=11% Similarity=-0.157 Sum_probs=23.8
Q ss_pred HHHHhCCEEEEcCC-CCCCchHHHH---HHhcCCceEEe
Q 043397 479 MLYAAADIVLVPSI-YEPCGLAQMI---GMRYGAVPVVR 513 (596)
Q Consensus 479 ~~~a~aDi~l~PS~-~E~~gl~~lE---Ama~G~pvI~s 513 (596)
..+..||++|.--. .+.-.-+.+| |.+.|+||++-
T Consensus 65 ~~i~~aD~viA~ldg~~~D~Gt~~EiG~A~a~gkPVi~~ 103 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVAL 103 (162)
T ss_dssp HHHHTCSEEEEECCSSSCCHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 46799999886432 2333445554 67999999983
No 404
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=25.18 E-value=4.1e+02 Score=24.59 Aligned_cols=72 Identities=10% Similarity=-0.044 Sum_probs=42.3
Q ss_pred EEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCC
Q 043397 409 VVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAAD 485 (596)
Q Consensus 409 il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aD 485 (596)
..+.+.....++...+.+.+.+ .++...+++.+ .....-+.+.+++.|+.+.|.+.|+=+.++....+..-.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~l~~--~~~~~ai~~~~---d~~a~g~~~al~~~g~~~di~vig~d~~~~~~~~~~~~~ 234 (305)
T 3g1w_A 163 AVEDGRGDSLHSRRVAHQLLED--YPNLAGIFATE---ANGGVGVGDAVRLESRAGEIQIISFDTDKGTLDLVDEGI 234 (305)
T ss_dssp EEEECTTCHHHHHHHHHHHHHH--CTTEEEEEESS---HHHHHHHHHHHHHTTCTTTSEEEEESCCHHHHHHHHTTS
T ss_pred EEecCCCCHHHHHHHHHHHHHh--CCCceEEEECC---CcchhhHHHHHHhcCCCCCeEEEEeCCCHHHHHHHHcCc
Confidence 3445555555444444333322 14678888776 444445556667788777799999876655455555443
No 405
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=25.12 E-value=83 Score=28.17 Aligned_cols=23 Identities=13% Similarity=0.033 Sum_probs=19.3
Q ss_pred HHHHhHHHHHHHhcCCeEEEEec
Q 043397 128 GDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 128 ~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
...+.++++.|.+.|++|.++.+
T Consensus 14 a~k~~~l~~~L~~~g~~V~vv~T 36 (189)
T 2ejb_A 14 VIYGIKLLQVLEELDFSVDLVIS 36 (189)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHCCCEEEEEEC
Confidence 34678899999999999998874
No 406
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=25.03 E-value=45 Score=32.59 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=25.5
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+.|||.+|. . |.+-..+++.|.+.||+|.++...
T Consensus 30 ~~~~I~iIG--------~---G~mG~~~a~~l~~~G~~V~~~dr~ 63 (320)
T 4dll_A 30 YARKITFLG--------T---GSMGLPMARRLCEAGYALQVWNRT 63 (320)
T ss_dssp CCSEEEEEC--------C---TTTHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCEEEEEC--------c---cHHHHHHHHHHHhCCCeEEEEcCC
Confidence 468999983 2 334457889999999999988643
No 407
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=25.00 E-value=84 Score=28.38 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=25.0
Q ss_pred eeEEEEeecccccccccCH-HHHHhHHHHHHHhc-CCeEEEEec
Q 043397 109 MHIIHITAEMAPIAKVGGL-GDVVTGLARACLSR-GHTVDIMLP 150 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~-~~~~~~La~aL~~~-Gh~V~vi~p 150 (596)
|||++-. +|++ ...+.++.+.|.+. |++|.|+.+
T Consensus 1 ~~Illgv--------TGsiaa~k~~~ll~~L~~~~g~~V~vv~T 36 (197)
T 1sbz_A 1 MKLIVGM--------TGATGAPLGVALLQALREMPNVETHLVMS 36 (197)
T ss_dssp CEEEEEE--------CSSSCHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred CEEEEEE--------eChHHHHHHHHHHHHHHhccCCEEEEEEC
Confidence 6776653 2332 34678899999999 999998874
No 408
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=24.99 E-value=2.6e+02 Score=22.21 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=22.5
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEE
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIM 148 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi 148 (596)
.++||+++... ......+...|.+.|++|..+
T Consensus 5 ~~~~iLivdd~----------~~~~~~l~~~l~~~g~~v~~~ 36 (140)
T 3grc_A 5 PRPRILICEDD----------PDIARLLNLMLEKGGFDSDMV 36 (140)
T ss_dssp CCSEEEEECSC----------HHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEcCC----------HHHHHHHHHHHHHCCCeEEEE
Confidence 35789998422 455567788888889987655
No 409
>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*
Probab=24.97 E-value=55 Score=32.11 Aligned_cols=32 Identities=25% Similarity=0.316 Sum_probs=23.1
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhc-CCeEEEEec
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSR-GHTVDIMLP 150 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~-Gh~V~vi~p 150 (596)
|||++. ||.+-.-..+++.|.+. ||+|.++..
T Consensus 1 MkvlVT----------GasG~iG~~l~~~L~~~~g~~V~~~~r 33 (361)
T 1kew_A 1 MKILIT----------GGAGFIGSAVVRHIIKNTQDTVVNIDK 33 (361)
T ss_dssp CEEEEE----------STTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred CEEEEE----------CCCchHhHHHHHHHHhcCCCeEEEEec
Confidence 676655 55555555788888888 799998863
No 410
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=24.93 E-value=55 Score=30.88 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=24.0
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
|+++|| ||.+-.-..+++.|+++|++|.++..
T Consensus 29 k~vlVT---------Gas~gIG~aia~~la~~G~~V~~~~~ 60 (269)
T 4dmm_A 29 RIALVT---------GASRGIGRAIALELAAAGAKVAVNYA 60 (269)
T ss_dssp CEEEET---------TCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEE---------CCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 677776 44444445789999999999988764
No 411
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=24.92 E-value=70 Score=30.27 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=23.5
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
|+++|| ||.+-.-..+++.|+++|++|.++...
T Consensus 23 k~vlVT---------Gas~gIG~~ia~~l~~~G~~V~~~~r~ 55 (277)
T 2rhc_B 23 EVALVT---------GATSGIGLEIARRLGKEGLRVFVCARG 55 (277)
T ss_dssp CEEEEE---------TCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEE---------CCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 566665 443444457899999999999888643
No 412
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=24.87 E-value=57 Score=32.11 Aligned_cols=33 Identities=12% Similarity=-0.059 Sum_probs=24.4
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+|||+++. . |.+-..++..|.+.||+|+++...
T Consensus 4 ~mki~iiG--------~---G~~G~~~a~~L~~~g~~V~~~~r~ 36 (359)
T 1bg6_A 4 SKTYAVLG--------L---GNGGHAFAAYLALKGQSVLAWDID 36 (359)
T ss_dssp CCEEEEEC--------C---SHHHHHHHHHHHHTTCEEEEECSC
T ss_pred cCeEEEEC--------C---CHHHHHHHHHHHhCCCEEEEEeCC
Confidence 48999883 1 344456788899999999988643
No 413
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A*
Probab=24.86 E-value=87 Score=31.35 Aligned_cols=78 Identities=6% Similarity=-0.046 Sum_probs=50.4
Q ss_pred HHHHHhCCEEEEc--CCCCCC-chHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEE-E-eCCCHHHHHHHHH
Q 043397 478 HMLYAAADIVLVP--SIYEPC-GLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFV-F-EGIDEGSLNWALD 552 (596)
Q Consensus 478 ~~~~a~aDi~l~P--S~~E~~-gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~l-v-~~~d~~~la~~i~ 552 (596)
.++++..-..|.- |..+.+ -=++.+|+.+|+.||.-..+.+.+.+.. +.++ + +-.++++|++-|.
T Consensus 226 ~~~l~~YKFyLafENs~c~dYvTEK~~~al~~g~VPI~~G~~~~~~~~Pp----------~SfI~~~dF~s~~~La~yL~ 295 (371)
T 2nzw_A 226 NEFLSQYKFNLCFENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFNP----------KSFVNVHDFKNFDEAIDYIK 295 (371)
T ss_dssp HHHHTTEEEEEEECSSCCTTCCCTHHHHHHHTTCEEEEESCTTGGGTSCG----------GGSEEGGGSSSHHHHHHHHH
T ss_pred HHHHhcCcEEEEEeccCCCCcccHHHHHHHhCCeEEEEECCCchhhhCCC----------CceEEcccCCCHHHHHHHHH
Confidence 4556666555542 222222 2267899999999998765555555532 3333 3 3347899999999
Q ss_pred HHHHhccCCHHHHHHHH
Q 043397 553 RAFRHFIDKPEEWNRIV 569 (596)
Q Consensus 553 ~ll~~~~~~~~~~~~~~ 569 (596)
.|-+ |++++.+.-
T Consensus 296 ~L~~----n~~~Y~~y~ 308 (371)
T 2nzw_A 296 YLHT----HKNAYLDML 308 (371)
T ss_dssp HHHT----CHHHHHHHH
T ss_pred HHhc----CHHHHHHHH
Confidence 9987 888877765
No 414
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*
Probab=24.84 E-value=54 Score=32.18 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=24.6
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcC-CeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRG-HTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~G-h~V~vi~p~ 151 (596)
|+|+++ ||.+..-..++++|.++| ++|.++...
T Consensus 47 ~~vlVt----------GatG~iG~~l~~~L~~~g~~~V~~~~r~ 80 (357)
T 2x6t_A 47 RMIIVT----------GGAGFIGSNIVKALNDKGITDILVVDNL 80 (357)
T ss_dssp -CEEEE----------TTTSHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CEEEEE----------CCCcHHHHHHHHHHHHCCCcEEEEEecC
Confidence 677665 555666668899999999 999988743
No 415
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=24.83 E-value=53 Score=32.26 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=24.6
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
.|||++|. . |.+-..++..|++.||+|+++..
T Consensus 3 ~mkI~IiG--------a---G~~G~~~a~~L~~~g~~V~~~~r 34 (335)
T 3ghy_A 3 LTRICIVG--------A---GAVGGYLGARLALAGEAINVLAR 34 (335)
T ss_dssp CCCEEEES--------C---CHHHHHHHHHHHHTTCCEEEECC
T ss_pred CCEEEEEC--------c---CHHHHHHHHHHHHCCCEEEEEEC
Confidence 48999983 2 34445778889999999999985
No 416
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=24.71 E-value=49 Score=33.79 Aligned_cols=35 Identities=23% Similarity=0.162 Sum_probs=27.5
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccc
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFY 152 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~ 152 (596)
..|+|+++ | .+++-..+++.|.+.|++|+++-...
T Consensus 3 ~~~~viIi----------G-~Gr~G~~va~~L~~~g~~vvvId~d~ 37 (413)
T 3l9w_A 3 HGMRVIIA----------G-FGRFGQITGRLLLSSGVKMVVLDHDP 37 (413)
T ss_dssp -CCSEEEE----------C-CSHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred CCCeEEEE----------C-CCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 45788887 3 37777889999999999999997543
No 417
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=24.68 E-value=49 Score=31.38 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=23.5
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
|+++||--. ..+|++ ..+++.|+++|++|.++...
T Consensus 27 k~vlVTGas----g~~GIG---~~ia~~l~~~G~~V~~~~r~ 61 (280)
T 3nrc_A 27 KKILITGLL----SNKSIA---YGIAKAMHREGAELAFTYVG 61 (280)
T ss_dssp CEEEECCCC----STTCHH---HHHHHHHHHTTCEEEEEECT
T ss_pred CEEEEECCC----CCCCHH---HHHHHHHHHcCCEEEEeeCc
Confidence 677776211 013455 47899999999999888644
No 418
>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0
Probab=24.58 E-value=3e+02 Score=26.97 Aligned_cols=142 Identities=8% Similarity=-0.019 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHcCCEEEE-EecCCCCcchHHHHHHHHHcCCCCcEEEEec-cC-HHHHHHHHHhCCEE--EEcCCC---
Q 043397 422 HLITHAIKRAEELGGQMIL-LGNSPVHWVQKDFEDLANLHNKGTSTRILLM-YS-EELSHMLYAAADIV--LVPSIY--- 493 (596)
Q Consensus 422 ~~ll~A~~~l~~~~~~lvI-vG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~-~~-~~~l~~~~a~aDi~--l~PS~~--- 493 (596)
+.+.++++..++.++.+.+ +|.. ...+.+.+....++. .-.=+|. +. ++++..+++...+. ++|+..
T Consensus 180 ~~~~~~~~~A~~~gl~~~~HagE~---~~~~~i~~al~~lg~--~rIgHgv~l~~d~~l~~~l~~~~i~le~cP~SN~~l 254 (343)
T 3rys_A 180 SKFERLYQRAAEAGLRRIAHAGEE---GPASYITEALDVLHV--ERIDHGIRCMEDTDVVQRLVAEQVPLTVCPLSNVRL 254 (343)
T ss_dssp GGGHHHHHHHHHTTCEEEEEESSS---SCHHHHHHHHHTSCC--SEEEECGGGGGCHHHHHHHHHHTCCEEECHHHHHHT
T ss_pred HHHHHHHHHHHHCCCeEEEeeCCC---CCHHHHHHHHhcCCc--ceeeeeeeecCChHHHHHHHhcCCCeeEchhHHHHh
Confidence 4566777776667777765 4542 223444444444443 2333443 33 35677788777654 566421
Q ss_pred ---CCCch-HHHHHHhcCCceEE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHH
Q 043397 494 ---EPCGL-AQMIGMRYGAVPVV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRI 568 (596)
Q Consensus 494 ---E~~gl-~~lEAma~G~pvI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~ 568 (596)
.+++. .+-+.+..|+||.. ||.++.... .|.+.+..+...+.-+++.+.++
T Consensus 255 ~~~~~~~~hPi~~ll~~Gv~V~l~TDdp~~~~~------------------------~l~~E~~~a~~~~~l~~~~l~~l 310 (343)
T 3rys_A 255 RAVDKLADHPLPEMLAIGLNVCVNSDDPAYFGG------------------------YVDDNFEQLVKVLEFSVPEQATL 310 (343)
T ss_dssp TSSSCGGGCSHHHHHHTTCCEEECCBSTTTTTC------------------------CHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CCCCCcccchHHHHHHCCCeEEEeCCCccccCC------------------------CHHHHHHHHHHHcCCCHHHHHHH
Confidence 22221 35666788988765 565443211 12222222222222377888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHH
Q 043397 569 VQKIMENDNSWNNAAGKYMEIYNS 592 (596)
Q Consensus 569 ~~~~~~~~fs~~~~~~~~~~iy~~ 592 (596)
.+++++..|--+..-+++++-+++
T Consensus 311 ~~nsi~~sf~~~~~K~~l~~~~~~ 334 (343)
T 3rys_A 311 AANSIRSSFASDARKAVLLDEVTE 334 (343)
T ss_dssp HHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999988666666666666655444
No 419
>2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural genomics, medical ST genomics of pathogenic protozoa consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A
Probab=24.56 E-value=2e+02 Score=28.55 Aligned_cols=147 Identities=11% Similarity=0.016 Sum_probs=79.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCEEEE-EecCCCCcchHHHHHHHHHcCCCCcEEEEe-cc-CHHHHHHHHHhCCEEE--EcC
Q 043397 417 AQKGLHLITHAIKRAEELGGQMIL-LGNSPVHWVQKDFEDLANLHNKGTSTRILL-MY-SEELSHMLYAAADIVL--VPS 491 (596)
Q Consensus 417 ~~KGi~~ll~A~~~l~~~~~~lvI-vG~~~~g~~~~~l~~~~~~~~~~~~V~~~g-~~-~~~~l~~~~a~aDi~l--~PS 491 (596)
+..+.+.+.++++..++.++.+.+ +|...+|.....+......+|. ...-+| .+ +++++..+++..++.+ +|+
T Consensus 210 ~e~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~~~~i~~al~~lg~--~ri~Hgv~l~~~~~l~~~l~~~~i~v~~cP~ 287 (371)
T 2pgf_A 210 HEVDLKEYKEIFDYVRESGVPLSVHAGEDVTLPNLNTLYSAIQVLKV--ERIGHGIRVAESQELIDMVKEKNILLEVCPI 287 (371)
T ss_dssp SCCCGGGGHHHHHHHHHTTCCBEEEESCCTTSSSSHHHHHHHHTSCC--SEEEECGGGGGCHHHHHHHHHTTCEEEECHH
T ss_pred CcccHHHHHHHHHHHHHcCCcEEEeeCCCCCCCchHHHHHHHhccCC--CEEecchhccccHHHHHHHHHcCCeEEECcc
Confidence 334466777777777666665544 4542111111334444444453 233444 33 3456788999988876 664
Q ss_pred CC------CCCc-hHHHHHHhcCCceEE-eCCCCccccccccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhccCCHH
Q 043397 492 IY------EPCG-LAQMIGMRYGAVPVV-RKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPE 563 (596)
Q Consensus 492 ~~------E~~g-l~~lEAma~G~pvI~-s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~ 563 (596)
.. .+++ -.+-+.+..|+||.. ||.++.. + .++.+.+..+...+.-+++
T Consensus 288 SN~~l~~~~~~~~~pi~~ll~~Gv~V~lgTD~~~~~----------------~--------~~l~~e~~~a~~~~~l~~~ 343 (371)
T 2pgf_A 288 SNVLLKNAKSMDTHPIRQLYDAGVKVSVNSDDPGMF----------------L--------TNINDDYEELYTHLNFTLE 343 (371)
T ss_dssp HHHHTTSSSCGGGCTHHHHHHTTCEEEECCBCHHHH----------------T--------CCHHHHHHHHHHHHCCCHH
T ss_pred hhHHhCCCCccccChHHHHHHCCCeEEEeCCCCccc----------------C--------CCHHHHHHHHHHHhCCCHH
Confidence 31 1111 146777889987766 4432210 0 1222223222222222677
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043397 564 EWNRIVQKIMENDNSWNNAAGKYMEI 589 (596)
Q Consensus 564 ~~~~~~~~~~~~~fs~~~~~~~~~~i 589 (596)
...++.+++++.-|-.+..-+++++.
T Consensus 344 ~l~~lt~ns~~asf~~~~~K~~l~~~ 369 (371)
T 2pgf_A 344 DFMKMNEWALEKSFMDSNIKDKIKNL 369 (371)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77888888888677767666666654
No 420
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=24.48 E-value=64 Score=28.87 Aligned_cols=36 Identities=19% Similarity=0.382 Sum_probs=22.9
Q ss_pred eeEEEEeecccccccccCH-HHHHhHHHHHHHhcCCeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGL-GDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~-~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
||||+|... | +.++. ...+..+++.+ +.|++|.++-
T Consensus 1 MkiLiI~gs--p--r~~s~t~~l~~~~~~~~-~~g~~v~~~d 37 (196)
T 3lcm_A 1 MKILIVYTH--P--NPTSFNAEILKQVQTNL-SKEHTVSTLD 37 (196)
T ss_dssp CEEEEEECC--S--CTTSHHHHHHHHHHHHS-CTTSEEEEEE
T ss_pred CEEEEEEeC--C--CCCChHHHHHHHHHHHh-cCCCeEEEEE
Confidence 899999765 3 33443 33344444455 5799999885
No 421
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=24.48 E-value=63 Score=29.91 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=18.6
Q ss_pred ccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 124 VGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 124 ~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
.||+|. .+|++++++|++|+++.
T Consensus 33 Sg~iG~---aiA~~~~~~Ga~V~l~~ 55 (226)
T 1u7z_A 33 SGKMGF---AIAAAAARRGANVTLVS 55 (226)
T ss_dssp CSHHHH---HHHHHHHHTTCEEEEEE
T ss_pred ccHHHH---HHHHHHHHCCCEEEEEE
Confidence 355554 78999999999999985
No 422
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=24.39 E-value=61 Score=31.37 Aligned_cols=33 Identities=27% Similarity=0.254 Sum_probs=26.0
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
..|||.+|. .+.+-..+++.|.+.||+|.++-.
T Consensus 8 ~~~~IgiIG-----------~G~mG~~~A~~l~~~G~~V~~~dr 40 (306)
T 3l6d_A 8 FEFDVSVIG-----------LGAMGTIMAQVLLKQGKRVAIWNR 40 (306)
T ss_dssp CSCSEEEEC-----------CSHHHHHHHHHHHHTTCCEEEECS
T ss_pred CCCeEEEEC-----------CCHHHHHHHHHHHHCCCEEEEEeC
Confidence 457899882 356667899999999999998853
No 423
>4egs_A Ribose 5-phosphate isomerase RPIB; tyrosine phosphatase, dephosphorylation, hydrolase; 2.30A {Thermoanaerobacter tengcongensis}
Probab=24.34 E-value=76 Score=28.16 Aligned_cols=42 Identities=10% Similarity=0.076 Sum_probs=23.8
Q ss_pred cccCCCceeEEEEeecccccccccCHHHHHhHHHHHHHh-cCCeEEEEe
Q 043397 102 IEKDSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLS-RGHTVDIML 149 (596)
Q Consensus 102 ~~~~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~-~Gh~V~vi~ 149 (596)
....+.+||||||+..- -.-+.++..+.+.+.+ .|.++.|..
T Consensus 28 ~~m~~~~mkVLFVC~GN------iCRSpmAE~l~r~~~~~~g~~~~v~S 70 (180)
T 4egs_A 28 QQMGRGSMRVLFVCTGN------TCRSPMAEGIFNAKSKALGKDWEAKS 70 (180)
T ss_dssp ------CCEEEEEESSS------SSHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CcCCCCCeEEEEEeCCC------cccCHHHHHHHHHHHHhcCCceEEEE
Confidence 34466789999998543 2335666666665543 577777765
No 424
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Probab=24.31 E-value=78 Score=31.05 Aligned_cols=41 Identities=15% Similarity=-0.051 Sum_probs=32.9
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFY 152 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~ 152 (596)
..+ +-|+..+.| +.|. .+++..++.++.+.|.+|.+++|..
T Consensus 166 ~l~-l~ia~a~~~--~vGD-~rva~Sl~~~~~~~G~~v~~~~P~~ 206 (324)
T 1js1_X 166 RPK-VVMTWAPHP--RPLP-QAVPNSFAEWMNATDYEFVITHPEG 206 (324)
T ss_dssp SCE-EEEECCCCS--SCCC-SHHHHHHHHHHHTSSSEEEEECCTT
T ss_pred Cee-EEEEEEccc--ccCC-cchHHHHHHHHHHCCCEEEEeCCcc
Confidence 456 555554555 7788 9999999999999999999999853
No 425
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=24.29 E-value=67 Score=29.86 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=19.5
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+-.-..+++.|+++|++|.++..
T Consensus 9 Gas~gIG~~ia~~l~~~G~~V~~~~r 34 (256)
T 1geg_A 9 GAGQGIGKAIALRLVKDGFAVAIADY 34 (256)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 44444445789999999999988864
No 426
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Probab=24.28 E-value=60 Score=26.54 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=27.4
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcC--CeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRG--HTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~G--h~V~vi~ 149 (596)
||++++.....|. -...++...|....++| |+|.|+.
T Consensus 8 ~K~~ivi~s~d~~----~~~~~al~~A~~a~~~G~~~eV~i~~ 46 (117)
T 2fb6_A 8 DKLTILWTTDNKD----TVFNMLAMYALNSKNRGWWKHINIIL 46 (117)
T ss_dssp SEEEEEECCCCHH----HHHHTHHHHHHHHHHHTSCSEEEEEE
T ss_pred CeEEEEEEcCChH----HHHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 8988887665442 11245778899999999 7999997
No 427
>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*
Probab=24.21 E-value=65 Score=31.22 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=24.1
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhc---C---CeEEEEec
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSR---G---HTVDIMLP 150 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~---G---h~V~vi~p 150 (596)
|||++. ||.+..-..+++.|.++ | |+|.++..
T Consensus 1 M~vlVT----------GatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r 38 (337)
T 1r6d_A 1 MRLLVT----------GGAGFIGSHFVRQLLAGAYPDVPADEVIVLDS 38 (337)
T ss_dssp CEEEEE----------TTTSHHHHHHHHHHHHTSCTTSCCSEEEEEEC
T ss_pred CeEEEE----------CCccHHHHHHHHHHHhhhcCCCCceEEEEEEC
Confidence 677655 55566666889999996 8 99998864
No 428
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=24.18 E-value=23 Score=33.14 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=24.5
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
..|||.+|.. |.+-..|++.|.+.||+|..+..
T Consensus 5 ~~mkI~IIG~-----------G~~G~sLA~~L~~~G~~V~~~~~ 37 (232)
T 3dfu_A 5 PRLRVGIFDD-----------GSSTVNMAEKLDSVGHYVTVLHA 37 (232)
T ss_dssp CCCEEEEECC-----------SCCCSCHHHHHHHTTCEEEECSS
T ss_pred CCcEEEEEee-----------CHHHHHHHHHHHHCCCEEEEecC
Confidence 3589999942 22224799999999999988763
No 429
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=24.18 E-value=59 Score=30.58 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=24.7
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
+|+++|| ||.+-.-..+++.|+++|++|.++..
T Consensus 26 ~k~vlIT---------Gas~gIG~a~a~~l~~~G~~V~~~~~ 58 (272)
T 4e3z_A 26 TPVVLVT---------GGSRGIGAAVCRLAARQGWRVGVNYA 58 (272)
T ss_dssp SCEEEET---------TTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEE---------CCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 4677775 55455556899999999999988753
No 430
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=23.99 E-value=1.1e+02 Score=29.45 Aligned_cols=68 Identities=15% Similarity=-0.077 Sum_probs=45.8
Q ss_pred cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEe
Q 043397 434 LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVR 513 (596)
Q Consensus 434 ~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s 513 (596)
++++++-+-+ ...+..++++++++... +-+ +.++++.+|++++.+....-.-.+.+|+..|++|++-
T Consensus 30 ~~~~l~av~d----~~~~~~~~~a~~~~~~~------~~~---~~~ll~~~D~V~i~tp~~~h~~~~~~al~~gk~vl~E 96 (308)
T 3uuw_A 30 ERFEFVGAFT----PNKVKREKICSDYRIMP------FDS---IESLAKKCDCIFLHSSTETHYEIIKILLNLGVHVYVD 96 (308)
T ss_dssp SSSEEEEEEC----SCHHHHHHHHHHHTCCB------CSC---HHHHHTTCSEEEECCCGGGHHHHHHHHHHTTCEEEEC
T ss_pred CCeEEEEEEC----CCHHHHHHHHHHcCCCC------cCC---HHHHHhcCCEEEEeCCcHhHHHHHHHHHHCCCcEEEc
Confidence 5778775554 34566777777777531 223 3445559999998776554444577899999998885
Q ss_pred C
Q 043397 514 K 514 (596)
Q Consensus 514 ~ 514 (596)
+
T Consensus 97 K 97 (308)
T 3uuw_A 97 K 97 (308)
T ss_dssp S
T ss_pred C
Confidence 3
No 431
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Probab=23.96 E-value=59 Score=31.55 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=20.8
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+-.-..+++.|.++||+|.++..
T Consensus 12 GatGfIG~~l~~~L~~~G~~V~~~~r 37 (337)
T 2c29_D 12 GASGFIGSWLVMRLLERGYTVRATVR 37 (337)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCchHHHHHHHHHHHHCCCEEEEEEC
Confidence 66666666889999999999987764
No 432
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2
Probab=23.94 E-value=70 Score=29.88 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=20.2
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+-.-..+++.|.++|++|.++..
T Consensus 28 GasggiG~~la~~l~~~G~~v~~~~r 53 (274)
T 1ja9_A 28 GAGRGIGRGIAIELGRRGASVVVNYG 53 (274)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 55555556889999999999988764
No 433
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=23.84 E-value=42 Score=32.30 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=24.3
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+|||+++. .|.++ ..++..|.+.||+|+++...
T Consensus 2 ~mkI~iiG--------aGa~G---~~~a~~L~~~g~~V~~~~r~ 34 (294)
T 3g17_A 2 SLSVAIIG--------PGAVG---TTIAYELQQSLPHTTLIGRH 34 (294)
T ss_dssp -CCEEEEC--------CSHHH---HHHHHHHHHHCTTCEEEESS
T ss_pred CcEEEEEC--------CCHHH---HHHHHHHHHCCCeEEEEEec
Confidence 48999983 24444 36788888899999999854
No 434
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2
Probab=23.78 E-value=58 Score=30.37 Aligned_cols=35 Identities=26% Similarity=0.147 Sum_probs=25.7
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcC---CeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRG---HTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~G---h~V~vi~p~ 151 (596)
.||+++|| ||.+-.-..+++.|+++| ++|.++...
T Consensus 20 ~~k~vlIT---------GasggIG~~la~~L~~~G~~~~~V~~~~r~ 57 (267)
T 1sny_A 20 HMNSILIT---------GCNRGLGLGLVKALLNLPQPPQHLFTTCRN 57 (267)
T ss_dssp CCSEEEES---------CCSSHHHHHHHHHHHTSSSCCSEEEEEESC
T ss_pred CCCEEEEE---------CCCCcHHHHHHHHHHhcCCCCcEEEEEecC
Confidence 45666775 444445558999999999 999998754
No 435
>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=23.77 E-value=59 Score=31.24 Aligned_cols=33 Identities=21% Similarity=0.130 Sum_probs=24.1
Q ss_pred eEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 110 HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 110 kIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
|+++|| ||.+-.-..+++.|+++|++|.++...
T Consensus 27 k~vlVT---------Gas~gIG~aia~~L~~~G~~V~~~~r~ 59 (297)
T 1xhl_A 27 KSVIIT---------GSSNGIGRSAAVIFAKEGAQVTITGRN 59 (297)
T ss_dssp CEEEET---------TCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEe---------CCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 566665 444444457899999999999988643
No 436
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=23.75 E-value=2.2e+02 Score=27.74 Aligned_cols=122 Identities=11% Similarity=-0.031 Sum_probs=0.0
Q ss_pred cccCeEEE--eChhhHHHHhhcchhhhhhhccCCcEEEeeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcC
Q 043397 322 VYSNAVVT--VSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLG 399 (596)
Q Consensus 322 ~~ad~vi~--vS~~~~~~~~~~g~l~~~~~~~~~ki~vI~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~ 399 (596)
+++|.|+. .++...+++.+ ...+-||.-| + +...|. .-..+--.+++.+|
T Consensus 100 ~~~D~iviR~~~~~~~~~lA~-----------~~~vPVINa~-~-~~~HPt---------------QaLaDl~Ti~e~~g 151 (321)
T 1oth_A 100 SMADAVLARVYKQSDLDTLAK-----------EASIPIINGL-S-DLYHPI---------------QILADYLTLQEHYS 151 (321)
T ss_dssp HHCSEEEEECSCHHHHHHHHH-----------HCSSCEEESC-C-SSCCHH---------------HHHHHHHHHHHHHS
T ss_pred HhCCEEEEeCCChhHHHHHHH-----------hCCCCEEcCC-C-CCCCcH---------------HHHHHHHHHHHHhC
Q ss_pred CCCCCCccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcch------HHHHHHHHHcCCCCcEEEEeccC
Q 043397 400 LKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQ------KDFEDLANLHNKGTSTRILLMYS 473 (596)
Q Consensus 400 l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~------~~l~~~~~~~~~~~~V~~~g~~~ 473 (596)
- -+...|.|+|-.. .=.+.++.++.++ ++++.++|. ..+. +..++.+++.|.. +.+.
T Consensus 152 ~---l~gl~va~vGD~~--~va~Sl~~~~~~~---G~~v~~~~P---~~~~~~~~~~~~~~~~a~~~G~~--~~~~---- 214 (321)
T 1oth_A 152 S---LKGLTLSWIGDGN--NILHSIMMSAAKF---GMHLQAATP---KGYEPDASVTKLAEQYAKENGTK--LLLT---- 214 (321)
T ss_dssp C---CTTCEEEEESCSS--HHHHHHHTTTGGG---TCEEEEECC---TTCCCCHHHHHHHHHHHHHHTCC--EEEE----
T ss_pred C---cCCcEEEEECCch--hhHHHHHHHHHHc---CCeEEEECC---ccccCCHHHHHHHHHHHHHcCCe--EEEE----
Q ss_pred HHHHHHHHHhCCEEEE
Q 043397 474 EELSHMLYAAADIVLV 489 (596)
Q Consensus 474 ~~~l~~~~a~aDi~l~ 489 (596)
.++.+.++.||++..
T Consensus 215 -~d~~eav~~aDvvy~ 229 (321)
T 1oth_A 215 -NDPLEAAHGGNVLIT 229 (321)
T ss_dssp -SCHHHHHTTCSEEEE
T ss_pred -ECHHHHhccCCEEEE
No 437
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=23.71 E-value=68 Score=30.21 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=24.6
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
.|+++|| ||.+-.-..+++.|+++|++|.++...
T Consensus 16 ~k~vlVT---------Gas~gIG~aia~~l~~~G~~V~~~~r~ 49 (266)
T 3p19_A 16 KKLVVIT---------GASSGIGEAIARRFSEEGHPLLLLARR 49 (266)
T ss_dssp CCEEEEE---------STTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEE---------CCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 3677776 444444458899999999999988643
No 438
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=23.69 E-value=64 Score=29.12 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=19.3
Q ss_pred CHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 126 GLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 126 G~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
|-.+.+.+||.+|+++| +|.++=
T Consensus 13 GKTT~a~~LA~~la~~g-~VlliD 35 (209)
T 3cwq_A 13 GKTTTAVHLSAYLALQG-ETLLID 35 (209)
T ss_dssp SHHHHHHHHHHHHHTTS-CEEEEE
T ss_pred cHHHHHHHHHHHHHhcC-CEEEEE
Confidence 44578889999999999 998875
No 439
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=23.67 E-value=2.9e+02 Score=24.37 Aligned_cols=59 Identities=7% Similarity=0.080 Sum_probs=35.1
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEE
Q 043397 408 LVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRIL 469 (596)
Q Consensus 408 ~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~ 469 (596)
+|+..+-+ .-+...+.++++.+++.++++.++|-..+....+ ++.+++..+..++-+|.
T Consensus 110 iil~~~~~--~~~~~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~-l~~la~~~n~~~~s~~~ 168 (192)
T 2x5n_A 110 VAFVGSPI--VEDEKNLIRLAKRMKKNNVAIDIIHIGELQNESA-LQHFIDAANSSDSCHLV 168 (192)
T ss_dssp EEEECSCC--SSCHHHHHHHHHHHHHTTEEEEEEEESCC---CH-HHHHHHHHCSTTCCEEE
T ss_pred EEEEECCC--CCCchhHHHHHHHHHHCCCEEEEEEeCCCCccHH-HHHHHHhccCCCceEEE
Confidence 33444544 2346678888888888899998888611111224 88888875533343333
No 440
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=23.66 E-value=1.5e+02 Score=28.13 Aligned_cols=33 Identities=24% Similarity=0.167 Sum_probs=24.2
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
.|+++|| ||.+-.-..+++.|+++|++|.++..
T Consensus 49 ~k~vlVT---------Gas~GIG~aia~~la~~G~~V~~~~~ 81 (294)
T 3r3s_A 49 DRKALVT---------GGDSGIGRAAAIAYAREGADVAINYL 81 (294)
T ss_dssp TCEEEEE---------TTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred CCEEEEe---------CCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 3677776 44444445899999999999988764
No 441
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=23.65 E-value=78 Score=28.91 Aligned_cols=27 Identities=15% Similarity=0.071 Sum_probs=20.4
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||.+-.-..+++.|+++|++|.++...
T Consensus 14 GasggiG~~~a~~l~~~G~~V~~~~r~ 40 (244)
T 1cyd_A 14 GAGKGIGRDTVKALHASGAKVVAVTRT 40 (244)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 444455557899999999999888643
No 442
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=23.65 E-value=67 Score=26.52 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=24.0
Q ss_pred cccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 123 KVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 123 ~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
..|....++..+++.|.+.|++|.++-
T Consensus 8 ~tGnT~~iA~~ia~~l~~~g~~v~~~~ 34 (138)
T 5nul_A 8 GTGNTEKMAELIAKGIIESGKDVNTIN 34 (138)
T ss_dssp SSSHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCchHHHHHHHHHHHHHHCCCeEEEEE
Confidence 458889999999999999999999885
No 443
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}
Probab=23.56 E-value=46 Score=31.84 Aligned_cols=26 Identities=19% Similarity=0.068 Sum_probs=20.8
Q ss_pred cCHHHHHhHHHHHHHhc--CCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSR--GHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~--Gh~V~vi~p 150 (596)
||.+..-..++++|.++ ||+|.++..
T Consensus 9 GatG~iG~~l~~~L~~~~~g~~V~~~~r 36 (312)
T 2yy7_A 9 GACGQIGTELTQKLRKLYGTENVIASDI 36 (312)
T ss_dssp TTTSHHHHHHHHHHHHHHCGGGEEEEES
T ss_pred CCccHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 55566666889999998 999999874
No 444
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}
Probab=23.54 E-value=25 Score=33.12 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=19.9
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+..-..+++.|.++||+|.++..
T Consensus 9 GatG~iG~~l~~~L~~~g~~V~~~~r 34 (267)
T 3ay3_A 9 GAAGGVGSAIRPHLGTLAHEVRLSDI 34 (267)
T ss_dssp STTSHHHHHHGGGGGGTEEEEEECCS
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEEeC
Confidence 55555556788889999999988863
No 445
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=23.53 E-value=66 Score=30.32 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=26.7
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccch
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECI 155 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~ 155 (596)
+|||+.. .-.. .+.-...|+++|.+.| +|+|++|..++.
T Consensus 2 p~ILlTN-DDGi------~apGi~~L~~~l~~~g-~V~VvAP~~~~S 40 (251)
T 2wqk_A 2 PTFLLVN-DDGY------FSPGINALREALKSLG-RVVVVAPDRNLS 40 (251)
T ss_dssp CEEEEEC-SSCT------TCHHHHHHHHHHTTTS-EEEEEEESSCCT
T ss_pred CEEEEEc-CCCC------CcHHHHHHHHHHHhCC-CEEEEeeCCCCc
Confidence 4677664 3322 2455678899999998 699999875543
No 446
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=23.50 E-value=56 Score=31.78 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=25.0
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCC-eEEEEec
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGH-TVDIMLP 150 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh-~V~vi~p 150 (596)
.+|||.+|. .|.+-..+++.|.+.|| +|.++..
T Consensus 23 ~~~~I~iIG-----------~G~mG~~~A~~L~~~G~~~V~~~dr 56 (312)
T 3qsg_A 23 NAMKLGFIG-----------FGEAASAIASGLRQAGAIDMAAYDA 56 (312)
T ss_dssp --CEEEEEC-----------CSHHHHHHHHHHHHHSCCEEEEECS
T ss_pred CCCEEEEEC-----------ccHHHHHHHHHHHHCCCCeEEEEcC
Confidence 468999983 35666689999999999 9998864
No 447
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}
Probab=23.43 E-value=69 Score=30.72 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=20.6
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+-.-..++++|.++||+|.++..
T Consensus 8 GatG~iG~~l~~~L~~~G~~V~~~~r 33 (322)
T 2p4h_X 8 GGTGFLGSWIIKSLLENGYSVNTTIR 33 (322)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred CChhHHHHHHHHHHHHCCCEEEEEEe
Confidence 55566666889999999999998763
No 448
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=23.28 E-value=3e+02 Score=22.35 Aligned_cols=33 Identities=9% Similarity=0.088 Sum_probs=23.2
Q ss_pred CCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEE
Q 043397 106 SNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIM 148 (596)
Q Consensus 106 ~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi 148 (596)
.++++|+++... ......+...|.+.|++|..+
T Consensus 12 ~~~~~ILivdd~----------~~~~~~l~~~L~~~g~~v~~~ 44 (153)
T 3hv2_A 12 TRRPEILLVDSQ----------EVILQRLQQLLSPLPYTLHFA 44 (153)
T ss_dssp CSCCEEEEECSC----------HHHHHHHHHHHTTSSCEEEEE
T ss_pred cCCceEEEECCC----------HHHHHHHHHHhcccCcEEEEE
Confidence 346799998532 445567788888889887755
No 449
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=23.27 E-value=2e+02 Score=27.80 Aligned_cols=92 Identities=9% Similarity=0.025 Sum_probs=52.5
Q ss_pred ccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--h
Q 043397 406 VPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--A 483 (596)
Q Consensus 406 ~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~ 483 (596)
...|+.+|-- .-|...++.++ ..++++++-+-+ ...+..++.+++++. +. .+++ +.++++ .
T Consensus 4 ~~rvgiiG~G--~~~~~~~~~~l---~~~~~~lvav~d----~~~~~~~~~a~~~~~---~~---~~~~--~~~ll~~~~ 66 (336)
T 2p2s_A 4 KIRFAAIGLA--HNHIYDMCQQL---IDAGAELAGVFE----SDSDNRAKFTSLFPS---VP---FAAS--AEQLITDAS 66 (336)
T ss_dssp CCEEEEECCS--STHHHHHHHHH---HHTTCEEEEEEC----SCTTSCHHHHHHSTT---CC---BCSC--HHHHHTCTT
T ss_pred ccEEEEECCC--hHHHHHhhhhh---cCCCcEEEEEeC----CCHHHHHHHHHhcCC---Cc---ccCC--HHHHhhCCC
Confidence 3467777741 11222344444 236788876655 122334556666642 11 1333 456676 5
Q ss_pred CCEEEEcCCCCCCchHHHHHHhcCCceEEeC
Q 043397 484 ADIVLVPSIYEPCGLAQMIGMRYGAVPVVRK 514 (596)
Q Consensus 484 aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~ 514 (596)
.|++++.+....-.-.+++|+..|++|++-+
T Consensus 67 ~D~V~i~tp~~~h~~~~~~al~aGkhVl~EK 97 (336)
T 2p2s_A 67 IDLIACAVIPCDRAELALRTLDAGKDFFTAK 97 (336)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred CCEEEEeCChhhHHHHHHHHHHCCCcEEEeC
Confidence 8999887754333445678999999999843
No 450
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=23.19 E-value=82 Score=30.18 Aligned_cols=33 Identities=15% Similarity=0.037 Sum_probs=24.1
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
.|+++|| ||.+-.-..+++.|++.|++|.++..
T Consensus 28 gk~~lVT---------Gas~GIG~aia~~la~~G~~V~~~~~ 60 (299)
T 3t7c_A 28 GKVAFIT---------GAARGQGRSHAITLAREGADIIAIDV 60 (299)
T ss_dssp TCEEEEE---------STTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEE---------CCCCHHHHHHHHHHHHCCCEEEEEec
Confidence 3677776 44444445789999999999988753
No 451
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=23.16 E-value=70 Score=29.26 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=19.6
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+-.-..+++.|+++|++|.++..
T Consensus 10 Gas~gIG~~~a~~l~~~G~~V~~~~r 35 (236)
T 1ooe_A 10 GGKGALGSAILEFFKKNGYTVLNIDL 35 (236)
T ss_dssp TTTSHHHHHHHHHHHHTTEEEEEEES
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEec
Confidence 44444445889999999999988863
No 452
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=23.12 E-value=1.3e+02 Score=29.79 Aligned_cols=95 Identities=13% Similarity=-0.060 Sum_probs=55.6
Q ss_pred CCccEEEEEecccccCCHHHHHHHHHHHHH-----cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHH
Q 043397 404 GTVPLVVCITRLVAQKGLHLITHAIKRAEE-----LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSH 478 (596)
Q Consensus 404 ~~~~~il~iGrl~~~KGi~~ll~A~~~l~~-----~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~ 478 (596)
.++..|+.+|-=.-.+ .-++++..+.. ++++++-+-+ ...+..++.+++++.. + . +++ +.
T Consensus 23 MkkirvgiIG~G~ig~---~H~~a~~~~~~~~~~~~~~~lvav~d----~~~~~a~~~a~~~g~~-~--~---y~d--~~ 87 (393)
T 4fb5_A 23 MKPLGIGLIGTGYMGK---CHALAWNAVKTVFGDVERPRLVHLAE----ANAGLAEARAGEFGFE-K--A---TAD--WR 87 (393)
T ss_dssp -CCCEEEEECCSHHHH---HHHHHHTTHHHHHCSSCCCEEEEEEC----C--TTHHHHHHHHTCS-E--E---ESC--HH
T ss_pred CCCccEEEEcCCHHHH---HHHHHHHhhhhhhccCCCcEEEEEEC----CCHHHHHHHHHHhCCC-e--e---cCC--HH
Confidence 3556788887421111 22334433322 4678876666 3345567788888763 1 1 233 45
Q ss_pred HHHH--hCCEEEEcCCCCCCchHHHHHHhcCCceEEe
Q 043397 479 MLYA--AADIVLVPSIYEPCGLAQMIGMRYGAVPVVR 513 (596)
Q Consensus 479 ~~~a--~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s 513 (596)
++++ ..|++++.+....=.-.+++|+.+|++|++=
T Consensus 88 ell~~~~iDaV~IatP~~~H~~~a~~al~aGkhVl~E 124 (393)
T 4fb5_A 88 ALIADPEVDVVSVTTPNQFHAEMAIAALEAGKHVWCE 124 (393)
T ss_dssp HHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEC
T ss_pred HHhcCCCCcEEEECCChHHHHHHHHHHHhcCCeEEEc
Confidence 5665 4688888776544444678999999999983
No 453
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=23.08 E-value=90 Score=29.28 Aligned_cols=27 Identities=7% Similarity=-0.224 Sum_probs=20.3
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||.+-.-..+++.|+++|++|.++...
T Consensus 38 GasggIG~~la~~L~~~G~~V~~~~r~ 64 (272)
T 1yb1_A 38 GAGHGIGRLTAYEFAKLKSKLVLWDIN 64 (272)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEEcC
Confidence 444445558899999999999888643
No 454
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=23.08 E-value=62 Score=31.36 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=23.6
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+|||+++. .|.++. .++..|++.||+|+++...
T Consensus 2 ~mkI~IiG--------aGaiG~---~~a~~L~~~g~~V~~~~r~ 34 (312)
T 3hn2_A 2 SLRIAIVG--------AGALGL---YYGALLQRSGEDVHFLLRR 34 (312)
T ss_dssp --CEEEEC--------CSTTHH---HHHHHHHHTSCCEEEECST
T ss_pred CCEEEEEC--------cCHHHH---HHHHHHHHCCCeEEEEEcC
Confidence 47999983 355554 5678888899999999854
No 455
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=23.04 E-value=72 Score=29.49 Aligned_cols=34 Identities=21% Similarity=0.123 Sum_probs=24.9
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
.|+++|| ||.+-.-..+++.|+++|++|.++...
T Consensus 9 ~k~vlIT---------Gas~giG~~~a~~l~~~G~~V~~~~r~ 42 (253)
T 3qiv_A 9 NKVGIVT---------GSGGGIGQAYAEALAREGAAVVVADIN 42 (253)
T ss_dssp TCEEEEE---------TTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEE---------CCCChHHHHHHHHHHHCCCEEEEEcCC
Confidence 3666675 444555558999999999999887643
No 456
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=23.02 E-value=1.7e+02 Score=28.36 Aligned_cols=75 Identities=12% Similarity=0.041 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--hCCEEEEcCCCCCCchHHH
Q 043397 424 ITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--AADIVLVPSIYEPCGLAQM 501 (596)
Q Consensus 424 ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~aDi~l~PS~~E~~gl~~l 501 (596)
+++++.+. ++++++-+-+ ...+..++++++++. . +++ +.++++ .+|++++.+....-.-.+.
T Consensus 18 ~~~~l~~~--~~~~l~av~d----~~~~~~~~~~~~~~~----~----~~~--~~~~l~~~~~D~V~i~tp~~~h~~~~~ 81 (331)
T 4hkt_A 18 HAKAVSGN--ADARLVAVAD----AFPAAAEAIAGAYGC----E----VRT--IDAIEAAADIDAVVICTPTDTHADLIE 81 (331)
T ss_dssp HHHHHHHC--TTEEEEEEEC----SSHHHHHHHHHHTTC----E----ECC--HHHHHHCTTCCEEEECSCGGGHHHHHH
T ss_pred HHHHHhhC--CCcEEEEEEC----CCHHHHHHHHHHhCC----C----cCC--HHHHhcCCCCCEEEEeCCchhHHHHHH
Confidence 44444332 5777775554 345666777777654 2 233 456677 7899988775544444677
Q ss_pred HHHhcCCceEEeC
Q 043397 502 IGMRYGAVPVVRK 514 (596)
Q Consensus 502 EAma~G~pvI~s~ 514 (596)
+|+..|++|++-+
T Consensus 82 ~al~~gk~v~~EK 94 (331)
T 4hkt_A 82 RFARAGKAIFCEK 94 (331)
T ss_dssp HHHHTTCEEEECS
T ss_pred HHHHcCCcEEEec
Confidence 8999999999844
No 457
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=23.02 E-value=4.5e+02 Score=24.21 Aligned_cols=73 Identities=5% Similarity=-0.078 Sum_probs=46.7
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCE
Q 043397 407 PLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADI 486 (596)
Q Consensus 407 ~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi 486 (596)
....+.+.....++...+.+.+.+- ++...+++.+ .. ...+.+.+++.|+ +.|.+.|+=+.+....++...-.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~ai~~~~---d~-a~g~~~al~~~g~-~di~vig~d~~~~~~~~~~~~~~ 246 (304)
T 3gbv_A 174 ILELNLHADLNIEDSRMLDDFFREH--PDVKHGITFN---SK-VYIIGEYLQQRRK-SDFSLIGYDLLERNVTCLKEGTV 246 (304)
T ss_dssp EEEEEEESSCSSCHHHHHHHHHHHC--TTCCEEEESS---SC-THHHHHHHHHTTC-CSCEEEEESCCHHHHHHHHHTSE
T ss_pred EEEeeecCCCHHHHHHHHHHHHHhC--CCeEEEEEcC---cc-hHHHHHHHHHcCC-CCcEEEEeCCCHHHHHHHHcCce
Confidence 3445567777777766665555432 5677788776 33 3445566677888 78999998776664556655433
No 458
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Probab=22.94 E-value=48 Score=31.76 Aligned_cols=33 Identities=24% Similarity=0.179 Sum_probs=23.2
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
++|||.+|. .|. +-..+++.|.+.||+|.++..
T Consensus 3 ~~~~i~iiG--------~G~---~G~~~a~~l~~~g~~V~~~~~ 35 (301)
T 3cky_A 3 KSIKIGFIG--------LGA---MGKPMAINLLKEGVTVYAFDL 35 (301)
T ss_dssp -CCEEEEEC--------CCT---THHHHHHHHHHTTCEEEEECS
T ss_pred CCCEEEEEC--------ccH---HHHHHHHHHHHCCCeEEEEeC
Confidence 458999983 233 334678888899999987753
No 459
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=22.92 E-value=62 Score=33.27 Aligned_cols=38 Identities=18% Similarity=0.081 Sum_probs=24.4
Q ss_pred cccCCCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 102 IEKDSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 102 ~~~~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
..+....|||.+|. +|.+-..+|..|++ ||+|.++-..
T Consensus 30 ~~r~~~~mkIaVIG-----------lG~mG~~lA~~La~-G~~V~~~D~~ 67 (432)
T 3pid_A 30 MGRGSEFMKITISG-----------TGYVGLSNGVLIAQ-NHEVVALDIV 67 (432)
T ss_dssp -----CCCEEEEEC-----------CSHHHHHHHHHHHT-TSEEEEECSC
T ss_pred cccccCCCEEEEEC-----------cCHHHHHHHHHHHc-CCeEEEEecC
Confidence 44566779999983 23444567888887 9999998644
No 460
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}
Probab=22.71 E-value=78 Score=29.52 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=23.6
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
.|+++|| ||.+-.-..++++|+++|++|.++..
T Consensus 21 ~k~vlVT---------Gas~gIG~aia~~l~~~G~~V~~~~r 53 (253)
T 2nm0_A 21 SRSVLVT---------GGNRGIGLAIARAFADAGDKVAITYR 53 (253)
T ss_dssp CCEEEEE---------TTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEe---------CCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 3566665 44444445789999999999988763
No 461
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=22.65 E-value=5.1e+02 Score=24.72 Aligned_cols=105 Identities=10% Similarity=0.068 Sum_probs=65.3
Q ss_pred CccEEEEEecccccCCHHHHHHHHHHHHHc----CCEEEEEecC----------CCC----cchHHHHHHHHHcCCCCcE
Q 043397 405 TVPLVVCITRLVAQKGLHLITHAIKRAEEL----GGQMILLGNS----------PVH----WVQKDFEDLANLHNKGTST 466 (596)
Q Consensus 405 ~~~~il~iGrl~~~KGi~~ll~A~~~l~~~----~~~lvIvG~~----------~~g----~~~~~l~~~~~~~~~~~~V 466 (596)
+.+.++.+|--. ....+.+++.++++++- ++.+++-+.- -.| .-...+.+.++++|+ .
T Consensus 15 ~~~~~vIaGPCs-ie~~~~~~e~A~~lk~~~~~~~~~~v~k~~f~KapRTs~~sf~Glg~~~GL~~L~~~~~e~Gl---p 90 (288)
T 3tml_A 15 DQPFFLIAGTCV-VESEQMTIDTAGRLKEICEKLNVPFIYKSSYDKANRSSGKSFRGLGMDEGLRILSEVKRQLGL---P 90 (288)
T ss_dssp TSCCEEEEECSB-CCCHHHHHHHHHHHHHHHHHHTCCEEEECBC--------------CHHHHHHHHHHHHHHHCC---C
T ss_pred CCceEEEEeCCc-CCCHHHHHHHHHHHHHHHHHcCCCEEEecccccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCC---e
Confidence 345556666433 33678888888888652 5555554310 011 123456667778776 3
Q ss_pred EEEeccCHHHHHHHHHhCCEEEEcCCC-CCCchHHHHHHhcCCceEEeC
Q 043397 467 RILLMYSEELSHMLYAAADIVLVPSIY-EPCGLAQMIGMRYGAVPVVRK 514 (596)
Q Consensus 467 ~~~g~~~~~~l~~~~a~aDi~l~PS~~-E~~gl~~lEAma~G~pvI~s~ 514 (596)
.+....+.+.+..+...+|++-++|.. .++++ +-++-..|+||+.++
T Consensus 91 ~~tev~d~~~v~~l~~~vd~lkIgA~~~~n~~L-Lr~~a~~gkPVilK~ 138 (288)
T 3tml_A 91 VLTDVHSIDEIEQVASVVDVLQTPAFLCRQTDF-IHACARSGKPVNIKK 138 (288)
T ss_dssp EEEECCSGGGHHHHHHHCSEEEECGGGTTCHHH-HHHHHTSSSCEEEEC
T ss_pred EEEEeCCHHHHHHHHHhCCEEEECcccccCHHH-HHHHHccCCcEEEeC
Confidence 555666666666665669999999963 55664 556678899999865
No 462
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6
Probab=22.63 E-value=64 Score=30.17 Aligned_cols=30 Identities=37% Similarity=0.468 Sum_probs=23.0
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEe
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIML 149 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~ 149 (596)
|||.+| |.+.+-..+++.|.+.||+|.++.
T Consensus 1 M~I~iI-----------G~G~mG~~la~~l~~~g~~V~~~~ 30 (264)
T 1i36_A 1 LRVGFI-----------GFGEVAQTLASRLRSRGVEVVTSL 30 (264)
T ss_dssp CEEEEE-----------SCSHHHHHHHHHHHHTTCEEEECC
T ss_pred CeEEEE-----------echHHHHHHHHHHHHCCCeEEEeC
Confidence 678877 235666688999999999998853
No 463
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=22.58 E-value=46 Score=31.77 Aligned_cols=34 Identities=15% Similarity=0.065 Sum_probs=24.7
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFY 152 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~ 152 (596)
+|||.+|. .+.+-..+++.|.+.||+|.++....
T Consensus 1 M~~I~iiG-----------~G~mG~~~a~~l~~~G~~V~~~dr~~ 34 (287)
T 3pdu_A 1 MTTYGFLG-----------LGIMGGPMAANLVRAGFDVTVWNRNP 34 (287)
T ss_dssp CCCEEEEC-----------CSTTHHHHHHHHHHHTCCEEEECSSG
T ss_pred CCeEEEEc-----------cCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 36788873 24444578899999999999986543
No 464
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=22.56 E-value=75 Score=30.10 Aligned_cols=34 Identities=21% Similarity=0.098 Sum_probs=24.1
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
.|+++|| ||.+-.-..+++.|+++|++|.++...
T Consensus 24 ~k~~lVT---------Gas~GIG~aia~~la~~G~~V~~~~r~ 57 (279)
T 3sju_A 24 PQTAFVT---------GVSSGIGLAVARTLAARGIAVYGCARD 57 (279)
T ss_dssp -CEEEEE---------STTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEe---------CCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3677776 444444457899999999999887643
No 465
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=22.55 E-value=27 Score=31.46 Aligned_cols=38 Identities=8% Similarity=0.243 Sum_probs=21.1
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEE-EE
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVD-IM 148 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~-vi 148 (596)
++|||++|+... +.++....+.+.+.++...|++|. ++
T Consensus 3 ~~mkil~I~GS~----r~~s~t~~l~~~~~~~~~~g~~v~~~i 41 (193)
T 3svl_A 3 EKLQVVTLLGSL----RKGSFNGMVARTLPKIAPASMEVNALP 41 (193)
T ss_dssp -CEEEEEEECCC----STTCHHHHHHHHGGGTSCTTEEEEECC
T ss_pred CCCEEEEEEccC----CCCCHHHHHHHHHHHHccCCCEEEEEE
Confidence 469999998654 345554433222222233577887 54
No 466
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A
Probab=22.51 E-value=48 Score=32.55 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=21.7
Q ss_pred CCCceeEEEEeecccccccccCHHHHHhHHHHHHHhcC--CeEEEEe
Q 043397 105 DSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRG--HTVDIML 149 (596)
Q Consensus 105 ~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~G--h~V~vi~ 149 (596)
.+++|||+++ ||.|.+-..++..|...| ++|.++-
T Consensus 5 ~~~~mKI~Vi----------GAaG~VG~~la~~L~~~g~~~ev~l~D 41 (326)
T 1smk_A 5 GAPGFKVAIL----------GAAGGIGQPLAMLMKMNPLVSVLHLYD 41 (326)
T ss_dssp ---CEEEEEE----------TTTSTTHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCCCCEEEEE----------CCCChHHHHHHHHHHhCCCCCEEEEEe
Confidence 3467999988 333333345677788888 7777764
No 467
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2
Probab=22.46 E-value=88 Score=28.94 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=19.2
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
||.+-.-..+++.|+++|++|.++..
T Consensus 26 Gas~gIG~~~a~~l~~~G~~V~~~~r 51 (249)
T 1o5i_A 26 AASRGIGRAVADVLSQEGAEVTICAR 51 (249)
T ss_dssp SCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 33344444789999999999988864
No 468
>3mst_A Putative nitrate transport protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.35A {Thermoplasma volcanium}
Probab=22.44 E-value=2.1e+02 Score=26.42 Aligned_cols=55 Identities=13% Similarity=0.091 Sum_probs=37.2
Q ss_pred ccceEEEeCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043397 533 KANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIMENDNSWNNAAGKYMEIY 590 (596)
Q Consensus 533 ~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~iy 590 (596)
+.||..+.. |++++.++=++-+++.++||+.-.+...... .+--.++.++.+.+|
T Consensus 158 gSCGi~V~~-~~~~Fl~AYeeGIelIR~DPe~aAeiVAsk~--~~~d~~~m~~~i~~y 212 (244)
T 3mst_A 158 PSCAMASTR-RIDEVIEAYEQGIDFIKNNHERAAEIISKKS--GYYSEEVMKKIIGIY 212 (244)
T ss_dssp CCEEEEESS-CCHHHHHHHHHHHHHHHHCHHHHHHHHHHHH--SSSCHHHHHHHGGGC
T ss_pred CCcEEEEcC-ChHHHHHHHHHHHHHHHHCHHHHHHHHHhcc--CCCCHHHHHHHHHHh
Confidence 468888865 6789999999999988889988766553332 333344444444444
No 469
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*
Probab=22.36 E-value=77 Score=29.18 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=20.4
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||.+-.-..+++.|+++|++|.++...
T Consensus 18 GasggiG~~la~~l~~~G~~V~~~~r~ 44 (254)
T 2wsb_A 18 GAGSGIGLEICRAFAASGARLILIDRE 44 (254)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 444445558899999999999988743
No 470
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=22.34 E-value=4.8e+02 Score=25.12 Aligned_cols=95 Identities=13% Similarity=0.018 Sum_probs=50.0
Q ss_pred ccEEEEEecccccCCHHHHHHHHHHHHHcCCEEEEEecCCCCc-------chHHHHHHHHHcCCCCcEEEEeccCHHHHH
Q 043397 406 VPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHW-------VQKDFEDLANLHNKGTSTRILLMYSEELSH 478 (596)
Q Consensus 406 ~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~lvIvG~~~~g~-------~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~ 478 (596)
+..|+|+|.- +.-...++.+.+.+.+++.+=...|.+ ....+.++|+++|+. +.-...+.++++.
T Consensus 3 ~mrIvf~Gt~------~fa~~~L~~L~~~~~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIp--v~~~~~~~~~~~~ 74 (314)
T 1fmt_A 3 SLRIIFAGTP------DFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLP--VFQPVSLRPQENQ 74 (314)
T ss_dssp CCEEEEEECS------HHHHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHHHTTCC--EECCSCSCSHHHH
T ss_pred CCEEEEEecC------HHHHHHHHHHHHCCCcEEEEEeCCCCccccccccCcCHHHHHHHHcCCc--EEecCCCCCHHHH
Confidence 3568888862 344455555544445544332211111 124577788888774 4333344455565
Q ss_pred HHHH--hCCEEEEcCCCCCCchHHHHHHhcCC
Q 043397 479 MLYA--AADIVLVPSIYEPCGLAQMIGMRYGA 508 (596)
Q Consensus 479 ~~~a--~aDi~l~PS~~E~~gl~~lEAma~G~ 508 (596)
+.++ ..|++|+..+---.+-.+++....|+
T Consensus 75 ~~l~~~~~Dliv~~~y~~ilp~~il~~~~~g~ 106 (314)
T 1fmt_A 75 QLVAELQADVMVVVAYGLILPKAVLEMPRLGC 106 (314)
T ss_dssp HHHHHTTCSEEEEESCCSCCCHHHHHSSTTCE
T ss_pred HHHHhcCCCEEEEeeccccCCHHHHhhccCCE
Confidence 6655 46888776654444445555444444
No 471
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=22.33 E-value=74 Score=29.25 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=24.6
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
.|+++|| ||.+-.-..+++.|+++|++|.++...
T Consensus 14 ~k~vlIT---------Gas~gIG~~ia~~l~~~G~~V~~~~r~ 47 (247)
T 3i1j_A 14 GRVILVT---------GAARGIGAAAARAYAAHGASVVLLGRT 47 (247)
T ss_dssp TCEEEES---------STTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEe---------CCCChHHHHHHHHHHHCCCEEEEEecC
Confidence 3667775 444444457899999999999888643
No 472
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=22.32 E-value=1.1e+02 Score=24.39 Aligned_cols=42 Identities=12% Similarity=0.036 Sum_probs=29.8
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEeccccch
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECI 155 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~~~~~ 155 (596)
.|||++++..- -|.+..+..+-+++.+.|.++.+-+......
T Consensus 4 ~mkIlvvC~~G------~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~ 45 (109)
T 2l2q_A 4 SMNILLVCGAG------MSTSMLVQRIEKYAKSKNINATIEAIAETRL 45 (109)
T ss_dssp CEEEEEESSSS------CSSCHHHHHHHHHHHHHTCSEEEEEECSTTH
T ss_pred ceEEEEECCCh------HhHHHHHHHHHHHHHHCCCCeEEEEecHHHH
Confidence 49999997532 2334777788889999999888766544444
No 473
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=22.32 E-value=1.2e+02 Score=29.52 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHH--hCCEEEEcCCCCCCchHHH
Q 043397 424 ITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYA--AADIVLVPSIYEPCGLAQM 501 (596)
Q Consensus 424 ll~A~~~l~~~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a--~aDi~l~PS~~E~~gl~~l 501 (596)
.++++..+...+++++-+.+ ...+..++++++++.. ++ +++ +.++++ ..|++++.+....-.-.+.
T Consensus 17 ~~~~l~~~~~~~~~l~av~d----~~~~~a~~~a~~~~~~-~~-----~~~--~~~ll~~~~vD~V~i~tp~~~H~~~~~ 84 (334)
T 3ohs_X 17 FTAVLQTLPRSEHQVVAVAA----RDLSRAKEFAQKHDIP-KA-----YGS--YEELAKDPNVEVAYVGTQHPQHKAAVM 84 (334)
T ss_dssp HHHHHTTSCTTTEEEEEEEC----SSHHHHHHHHHHHTCS-CE-----ESS--HHHHHHCTTCCEEEECCCGGGHHHHHH
T ss_pred HHHHHHhCCCCCeEEEEEEc----CCHHHHHHHHHHcCCC-cc-----cCC--HHHHhcCCCCCEEEECCCcHHHHHHHH
Confidence 34444433112356665555 3456677788887753 11 232 456676 6899998775443344577
Q ss_pred HHHhcCCceEEeC
Q 043397 502 IGMRYGAVPVVRK 514 (596)
Q Consensus 502 EAma~G~pvI~s~ 514 (596)
+|+..|++|++-+
T Consensus 85 ~al~~GkhVl~EK 97 (334)
T 3ohs_X 85 LCLAAGKAVLCEK 97 (334)
T ss_dssp HHHHTTCEEEEES
T ss_pred HHHhcCCEEEEEC
Confidence 8999999999854
No 474
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=22.28 E-value=2.1e+02 Score=24.73 Aligned_cols=74 Identities=18% Similarity=0.177 Sum_probs=43.2
Q ss_pred HHHHHhCCEEEEcCCCCCCchHHHH---HHhcCCceEEeCCCC----ccccccccCCCCCCCccceEEEeCCCHHHHHHH
Q 043397 478 HMLYAAADIVLVPSIYEPCGLAQMI---GMRYGAVPVVRKTGG----LADTVFDVDDPSNHEKANGFVFEGIDEGSLNWA 550 (596)
Q Consensus 478 ~~~~a~aDi~l~PS~~E~~gl~~lE---Ama~G~pvI~s~~gg----~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la~~ 550 (596)
...+..||++|.--- +.-.-+.+| |.+.|+|||+-.... +.-++.... ...-+-+...|.+++...
T Consensus 72 ~~~i~~aD~vva~~~-~~d~Gt~~EiGyA~algKPVi~l~~~~~~~~~n~M~~g~~------~~~~~~~~~y~~~el~~~ 144 (165)
T 2khz_A 72 LNWLQQADVVVAEVT-QPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAA------DGSRFQVWDYAEGEVETM 144 (165)
T ss_dssp HHHHHHCSEEEEECS-SCCHHHHHHHHHHHHTCSSEEEEECTTTTCCCCHHHHHTC------CSSSEEEEECCTTTHHHH
T ss_pred HHHHHhCCEEEEECC-CCCCCHHHHHHHHHHCCCEEEEEEcCCCCCcchhhhcccC------ccceeEEEecCHHHHHHH
Confidence 367899999886322 444445555 578999999942221 222222100 001233322388899999
Q ss_pred HHHHHHhc
Q 043397 551 LDRAFRHF 558 (596)
Q Consensus 551 i~~ll~~~ 558 (596)
|.+++..+
T Consensus 145 l~~~~~~~ 152 (165)
T 2khz_A 145 LDRYFEAY 152 (165)
T ss_dssp HHHHHHTS
T ss_pred HHHHHHhc
Confidence 98888744
No 475
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=22.25 E-value=89 Score=29.01 Aligned_cols=34 Identities=15% Similarity=0.053 Sum_probs=24.3
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
.|+++|| ||.+-.-..+++.|+++|++|.++...
T Consensus 7 ~k~vlVT---------Gas~GIG~aia~~l~~~G~~V~~~~r~ 40 (252)
T 3h7a_A 7 NATVAVI---------GAGDYIGAEIAKKFAAEGFTVFAGRRN 40 (252)
T ss_dssp SCEEEEE---------CCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEE---------CCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3566665 444444458899999999999888744
No 476
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=22.20 E-value=98 Score=29.66 Aligned_cols=40 Identities=13% Similarity=-0.048 Sum_probs=28.6
Q ss_pred CCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 106 SNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 106 ~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
.++|||+.|+ . - ..-|-.+.+.+||.+|+++|++|.++=.
T Consensus 38 ~~~~~vI~v~-~-K---GGvGKTT~a~nLA~~La~~G~~VlliD~ 77 (307)
T 3end_A 38 ITGAKVFAVY-G-K---GGIGKSTTSSNLSAAFSILGKRVLQIGC 77 (307)
T ss_dssp --CCEEEEEE-C-S---TTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCceEEEEE-C-C---CCccHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3457877776 2 1 1235567889999999999999999853
No 477
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1
Probab=22.20 E-value=76 Score=31.01 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=20.1
Q ss_pred HHHHhHHHHHHHhcCCeEEEEec
Q 043397 128 GDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 128 ~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
|.+-..+|+++.++|++|++++.
T Consensus 65 GkmG~aiAe~~~~~Ga~V~lv~g 87 (313)
T 1p9o_A 65 GRRGATSAEAFLAAGYGVLFLYR 87 (313)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cHHHHHHHHHHHHCCCEEEEEec
Confidence 56667899999999999999984
No 478
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=22.14 E-value=1.7e+02 Score=29.15 Aligned_cols=68 Identities=12% Similarity=0.016 Sum_probs=44.5
Q ss_pred cCCEEEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCCCCCCchHHHHHHhcCCceE
Q 043397 434 LGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSIYEPCGLAQMIGMRYGAVPV 511 (596)
Q Consensus 434 ~~~~lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~~E~~gl~~lEAma~G~pvI 511 (596)
++++++-+-+ ...+..++.+++++.. . +++ +.++++. .|++++.+....-.-.+.+|+..|++|+
T Consensus 26 ~~~~l~av~d----~~~~~~~~~a~~~g~~----~---~~~--~~ell~~~~vD~V~i~tp~~~H~~~~~~al~aGk~Vl 92 (387)
T 3moi_A 26 PDAQIVAACD----PNEDVRERFGKEYGIP----V---FAT--LAEMMQHVQMDAVYIASPHQFHCEHVVQASEQGLHII 92 (387)
T ss_dssp TTEEEEEEEC----SCHHHHHHHHHHHTCC----E---ESS--HHHHHHHSCCSEEEECSCGGGHHHHHHHHHHTTCEEE
T ss_pred CCeEEEEEEe----CCHHHHHHHHHHcCCC----e---ECC--HHHHHcCCCCCEEEEcCCcHHHHHHHHHHHHCCCcee
Confidence 5677765555 2345666777777642 1 222 4556664 8999987765433446779999999999
Q ss_pred EeC
Q 043397 512 VRK 514 (596)
Q Consensus 512 ~s~ 514 (596)
+-+
T Consensus 93 ~EK 95 (387)
T 3moi_A 93 VEK 95 (387)
T ss_dssp ECS
T ss_pred eeC
Confidence 854
No 479
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=22.13 E-value=71 Score=30.92 Aligned_cols=32 Identities=22% Similarity=0.013 Sum_probs=23.9
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+|||+++. .|.++. .++..|. .||+|+++...
T Consensus 2 ~mkI~IiG--------aGa~G~---~~a~~L~-~g~~V~~~~r~ 33 (307)
T 3ego_A 2 SLKIGIIG--------GGSVGL---LCAYYLS-LYHDVTVVTRR 33 (307)
T ss_dssp CCEEEEEC--------CSHHHH---HHHHHHH-TTSEEEEECSC
T ss_pred CCEEEEEC--------CCHHHH---HHHHHHh-cCCceEEEECC
Confidence 48999983 244444 6777888 89999999854
No 480
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=22.10 E-value=71 Score=31.29 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=27.8
Q ss_pred ceeEEEEeecccccccccCH--HHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGL--GDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~--~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
..+|++++. .||. .+.+..||.+|+++|++|.++...
T Consensus 18 ~~~i~v~sg-------kGGvGKTTva~~LA~~lA~~G~rVllvD~D 56 (329)
T 2woo_A 18 SLKWIFVGG-------KGGVGKTTTSCSLAIQMSKVRSSVLLISTD 56 (329)
T ss_dssp TCCEEEEEC-------SSSSSHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred CCEEEEEeC-------CCCCcHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 456777752 3444 557889999999999999998744
No 481
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Probab=21.98 E-value=84 Score=30.89 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=25.5
Q ss_pred CCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCC-eEEEEecc
Q 043397 106 SNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGH-TVDIMLPF 151 (596)
Q Consensus 106 ~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh-~V~vi~p~ 151 (596)
.++|||.++ |+ |.+-..++..|+..|| +|.++-..
T Consensus 7 ~~~~kI~VI----------Ga-G~vG~~lA~~la~~g~~~V~L~D~~ 42 (331)
T 1pzg_A 7 QRRKKVAMI----------GS-GMIGGTMGYLCALRELADVVLYDVV 42 (331)
T ss_dssp SCCCEEEEE----------CC-SHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred CCCCEEEEE----------CC-CHHHHHHHHHHHhCCCCeEEEEECC
Confidence 346899988 33 5555669999999999 87776543
No 482
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}
Probab=21.95 E-value=73 Score=29.81 Aligned_cols=33 Identities=27% Similarity=0.296 Sum_probs=24.0
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
.|+++|| ||.+-.-..+++.|+++|++|.++..
T Consensus 28 ~k~vlVT---------Gas~gIG~aia~~l~~~G~~V~~~~r 60 (260)
T 3un1_A 28 QKVVVIT---------GASQGIGAGLVRAYRDRNYRVVATSR 60 (260)
T ss_dssp CCEEEES---------SCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEe---------CCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 3677776 44444445889999999999998863
No 483
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=21.90 E-value=4.4e+02 Score=23.74 Aligned_cols=96 Identities=16% Similarity=0.139 Sum_probs=51.8
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcC--CeEEEEeccccchhhhhhcccceeeeEEeecCCceEEEEEEee
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRG--HTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHG 185 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~G--h~V~vi~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (596)
++||+++. .|.+.....+..++.+.+ ++|..+.+..+.....+ ..
T Consensus 7 ~~ri~vl~---------SG~gsnl~all~~~~~~~l~~~I~~Visn~~~a~~l~------------------------~A 53 (209)
T 4ds3_A 7 RNRVVIFI---------SGGGSNMEALIRAAQAPGFPAEIVAVFSDKAEAGGLA------------------------KA 53 (209)
T ss_dssp CEEEEEEE---------SSCCHHHHHHHHHHTSTTCSEEEEEEEESCTTCTHHH------------------------HH
T ss_pred CccEEEEE---------ECCcHHHHHHHHHHHcCCCCcEEEEEEECCcccHHHH------------------------HH
Confidence 36788774 344677788888886643 57665554321111100 11
Q ss_pred eeCCeEEEEEcCCccccCCCcccCCChhhHHHHHHHHHHHHHHHHhhCCCCcEEEEcCCccchHHHHH
Q 043397 186 VVSSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLY 253 (596)
Q Consensus 186 ~~~gv~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~f~~~~~~~l~~~~~~pDVIh~~~~~~~~~~~~~ 253 (596)
...|++++.+++. .+.. -..|-..+.+.++. .+||+|.+-.|..-+-+.++
T Consensus 54 ~~~gIp~~~~~~~-~~~~--------------r~~~d~~~~~~l~~--~~~Dliv~agy~~il~~~~l 104 (209)
T 4ds3_A 54 EAAGIATQVFKRK-DFAS--------------KEAHEDAILAALDV--LKPDIICLAGYMRLLSGRFI 104 (209)
T ss_dssp HHTTCCEEECCGG-GSSS--------------HHHHHHHHHHHHHH--HCCSEEEESSCCSCCCHHHH
T ss_pred HHcCCCEEEeCcc-ccCC--------------HHHHHHHHHHHHHh--cCCCEEEEeccccCcCHHHH
Confidence 2368888877631 1110 01133445555554 58999998876554444443
No 484
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=21.85 E-value=1.1e+02 Score=29.40 Aligned_cols=42 Identities=14% Similarity=0.032 Sum_probs=31.3
Q ss_pred CCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 106 SNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 106 ~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
.++.||+.|+..-+ .-|-...+.+||.+|++.|.+|.++=..
T Consensus 89 ~~~~kvI~vts~kg----G~GKTtva~nLA~~lA~~G~rVLLID~D 130 (286)
T 3la6_A 89 QAQNNVLMMTGVSP----SIGMTFVCANLAAVISQTNKRVLLIDCD 130 (286)
T ss_dssp TTTCCEEEEEESSS----SSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCCCeEEEEECCCC----CCcHHHHHHHHHHHHHhCCCCEEEEecc
Confidence 34568777765431 2466788899999999999999998643
No 485
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=21.85 E-value=2e+02 Score=28.27 Aligned_cols=105 Identities=9% Similarity=-0.009 Sum_probs=0.0
Q ss_pred eeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcC-CCCCCCccEEEEEecccccCCHHHHHHHHHHHHHcCC
Q 043397 358 ILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLG-LKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGG 436 (596)
Q Consensus 358 I~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~-l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~ 436 (596)
|-||-+ +...|. .-..+--.+++.+| - -+...|.|+|-. ...=...++.++.++ ++
T Consensus 125 VINa~~-~~~HPt---------------Q~LaDl~Ti~e~~g~~---l~gl~va~vGD~-~~~va~Sl~~~~~~~---G~ 181 (335)
T 1dxh_A 125 VFNGLT-DEYHPT---------------QMLADVLTMREHSDKP---LHDISYAYLGDA-RNNMGNSLLLIGAKL---GM 181 (335)
T ss_dssp EEEEEC-SSCCHH---------------HHHHHHHHHHHTCSSC---GGGCEEEEESCC-SSHHHHHHHHHHHHT---TC
T ss_pred EEcCCC-CCCCcH---------------HHHHHHHHHHHHcCCC---cCCeEEEEecCC-ccchHHHHHHHHHHc---CC
Q ss_pred EEEEEecC---CCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCC
Q 043397 437 QMILLGNS---PVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSI 492 (596)
Q Consensus 437 ~lvIvG~~---~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~ 492 (596)
++.+++.. .+....+..++.+++.|. ++.+. +++.+.++.||++....+
T Consensus 182 ~v~~~~P~~~~p~~~~~~~~~~~a~~~G~--~v~~~-----~d~~eav~~aDvvytd~w 233 (335)
T 1dxh_A 182 DVRIAAPKALWPHDEFVAQCKKFAEESGA--KLTLT-----EDPKEAVKGVDFVHTDVW 233 (335)
T ss_dssp EEEEECCGGGSCCHHHHHHHHHHHHHHTC--EEEEE-----SCHHHHTTTCSEEEECCC
T ss_pred EEEEECCcccCCCHHHHHHHHHHHHHcCC--eEEEE-----eCHHHHhCCCCEEEeCCc
No 486
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=21.82 E-value=2.1e+02 Score=23.12 Aligned_cols=68 Identities=18% Similarity=0.208 Sum_probs=37.8
Q ss_pred EeccCHHHHHHHHHhCCEEEEcCCCCCCchHHHHHHhcCCceEEeCCCCccccccccCCCCCCCccceEEEeCCCHHHHH
Q 043397 469 LLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLN 548 (596)
Q Consensus 469 ~g~~~~~~l~~~~a~aDi~l~PS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~i~~~~~~~~~~~~~G~lv~~~d~~~la 548 (596)
+-.+|.+.+..+++.++.++..-..-..++.-.-.+..|..+ ...+. +-+|. +-.++++.
T Consensus 50 ~~P~d~~~l~~~~~~~~~vvvvE~~~~G~l~~~i~~~~~~~~--------~~~i~---------~~~G~---~~~~~ei~ 109 (118)
T 3ju3_A 50 FSPFPTEFVKNVLSSANLVIDVESNYTAQAAQMIKLYTGIDI--------KNKIL---------KYNGR---HMTEDEIL 109 (118)
T ss_dssp SCSCCHHHHHHHHTTCSCCCCCCCCCCCCHHHHHHHHHCCCC--------CCCCC---------CBTTB---CCCHHHHH
T ss_pred EecCCHHHHHHHHcCCCEEEEEECCCCCcHHHHHHHHcCCCc--------eeEEe---------eeCCe---eCCHHHHH
Confidence 345677888888888876665533322344433334445321 11111 12443 34788999
Q ss_pred HHHHHHHH
Q 043397 549 WALDRAFR 556 (596)
Q Consensus 549 ~~i~~ll~ 556 (596)
+.+.+++.
T Consensus 110 ~~i~~~~~ 117 (118)
T 3ju3_A 110 KSAKEILN 117 (118)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 88888763
No 487
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=21.75 E-value=80 Score=29.18 Aligned_cols=27 Identities=22% Similarity=0.096 Sum_probs=20.5
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||.+-.-..+++.|+++|++|.++...
T Consensus 20 GasggiG~~la~~l~~~G~~V~~~~r~ 46 (260)
T 3awd_A 20 GGAQNIGLACVTALAEAGARVIIADLD 46 (260)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 444555558999999999999988743
No 488
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=21.68 E-value=96 Score=29.45 Aligned_cols=40 Identities=20% Similarity=0.158 Sum_probs=27.3
Q ss_pred ceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 108 LMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 108 ~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
+|||+.|+..- ..-|-.+.+.+||.+|+++|++|.++=..
T Consensus 3 M~kvI~v~s~K----GGvGKTT~a~nLA~~La~~G~~VlliD~D 42 (286)
T 2xj4_A 3 ETRVIVVGNEK----GGAGKSTIAVHLVTALLYGGAKVAVIDLD 42 (286)
T ss_dssp -CEEEEECCSS----SCTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEEcCC----CCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 45676665322 11244578889999999999999888543
No 489
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Probab=21.57 E-value=74 Score=30.03 Aligned_cols=32 Identities=28% Similarity=0.188 Sum_probs=24.3
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
|||.+|. .|.+-..+++.|.+.||+|.++...
T Consensus 1 m~i~iiG-----------~G~~G~~~a~~l~~~g~~V~~~~~~ 32 (279)
T 2f1k_A 1 MKIGVVG-----------LGLIGASLAGDLRRRGHYLIGVSRQ 32 (279)
T ss_dssp CEEEEEC-----------CSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEEc-----------CcHHHHHHHHHHHHCCCEEEEEECC
Confidence 6788772 3556668899999999999888643
No 490
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*
Probab=21.56 E-value=67 Score=31.41 Aligned_cols=33 Identities=9% Similarity=0.109 Sum_probs=25.2
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCC-------eEEEEe
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGH-------TVDIML 149 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh-------~V~vi~ 149 (596)
++|||+++ ||.|..-..++..|.++|+ +|.++-
T Consensus 3 ~~mkVlVt----------GaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D 42 (327)
T 1y7t_A 3 APVRVAVT----------GAAGQIGYSLLFRIAAGEMLGKDQPVILQLLE 42 (327)
T ss_dssp CCEEEEES----------STTSHHHHHHHHHHHTTTTTCTTCCEEEEEEC
T ss_pred CCCEEEEE----------CCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEe
Confidence 45898765 6667777788999999997 777764
No 491
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Probab=21.55 E-value=73 Score=33.21 Aligned_cols=33 Identities=21% Similarity=0.094 Sum_probs=25.3
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
..|||.+|. +|.+-..+|..|++.||+|+++-.
T Consensus 7 ~~~~I~VIG-----------~G~vG~~lA~~la~~G~~V~~~d~ 39 (478)
T 2y0c_A 7 GSMNLTIIG-----------SGSVGLVTGACLADIGHDVFCLDV 39 (478)
T ss_dssp CCCEEEEEC-----------CSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCceEEEEC-----------cCHHHHHHHHHHHhCCCEEEEEEC
Confidence 469999983 244445788899999999999864
No 492
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=21.50 E-value=75 Score=29.92 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=22.5
Q ss_pred cccCCCceeEEEEeeccc---------c-c---ccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 102 IEKDSNLMHIIHITAEMA---------P-I---AKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 102 ~~~~~~~mkIl~is~~~~---------P-~---~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
....+++||||++..... . + ...+|. ..+.++|...|++|+++++
T Consensus 4 ~~~~~~~~~vll~~~sw~~~~~~~~~~~~~~~~~~~~~~----~~l~~aL~~~~~~v~~~~~ 61 (256)
T 2gk3_A 4 MNNTQKKLKVLFIGESWHIHMIHSKGYDSFTSSKYEEGA----TWLLECLRKGGVDIDYMPA 61 (256)
T ss_dssp -------CEEEEEECEEEEEEEEEETTEEEEEEEEEESC----HHHHHHHHHTTCEEEEECH
T ss_pred chhhhhhcEEEEecCccceeeEeecccccccccCccccH----HHHHHHHHhcCceEEEEec
Confidence 344566799999944310 0 0 001232 2466667778999999963
No 493
>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*
Probab=21.48 E-value=67 Score=29.97 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=24.2
Q ss_pred eeEEEEeecccccccccCHHHHHhHHHHHHHhcC-CeEEEEecc
Q 043397 109 MHIIHITAEMAPIAKVGGLGDVVTGLARACLSRG-HTVDIMLPF 151 (596)
Q Consensus 109 mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~G-h~V~vi~p~ 151 (596)
|||.+|. .|.+-..++..|.+.| |+|.++...
T Consensus 1 m~i~iiG-----------~G~mG~~~a~~l~~~g~~~v~~~~r~ 33 (263)
T 1yqg_A 1 MNVYFLG-----------GGNMAAAVAGGLVKQGGYRIYIANRG 33 (263)
T ss_dssp CEEEEEC-----------CSHHHHHHHHHHHHHCSCEEEEECSS
T ss_pred CEEEEEC-----------chHHHHHHHHHHHHCCCCeEEEECCC
Confidence 6788772 2556667889999999 999888643
No 494
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=21.46 E-value=71 Score=31.74 Aligned_cols=39 Identities=10% Similarity=0.052 Sum_probs=29.5
Q ss_pred CceeEEEEeecccccccccCH--HHHHhHHHHHHH--hcCCeEEEEeccc
Q 043397 107 NLMHIIHITAEMAPIAKVGGL--GDVVTGLARACL--SRGHTVDIMLPFY 152 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~--~~~~~~La~aL~--~~Gh~V~vi~p~~ 152 (596)
+.++|++++. .||. .+.+.+||.+|+ ++|++|.++....
T Consensus 16 ~~~~i~v~sg-------KGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~ 58 (354)
T 2woj_A 16 TTHKWIFVGG-------KGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP 58 (354)
T ss_dssp SSCCEEEEEE-------STTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred CCcEEEEEeC-------CCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 3467888763 3444 557888999999 9999999998554
No 495
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=21.45 E-value=90 Score=30.47 Aligned_cols=33 Identities=27% Similarity=0.284 Sum_probs=22.9
Q ss_pred CceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 107 NLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 107 ~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
++|||+|+.+ ..++....++|.+.||+|..+..
T Consensus 2 ~~mrIvf~Gt-----------~~fa~~~L~~L~~~~~~i~~Vvt 34 (314)
T 1fmt_A 2 ESLRIIFAGT-----------PDFAARHLDALLSSGHNVVGVFT 34 (314)
T ss_dssp CCCEEEEEEC-----------SHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCEEEEEec-----------CHHHHHHHHHHHHCCCcEEEEEe
Confidence 5699999852 23445566778888999875543
No 496
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}
Probab=21.37 E-value=93 Score=28.78 Aligned_cols=27 Identities=15% Similarity=0.010 Sum_probs=20.6
Q ss_pred cCHHHHHhHHHHHHHhcCCeEEEEecc
Q 043397 125 GGLGDVVTGLARACLSRGHTVDIMLPF 151 (596)
Q Consensus 125 GG~~~~~~~La~aL~~~Gh~V~vi~p~ 151 (596)
||.+-.-..+++.|+++|++|.++...
T Consensus 14 GasggiG~~la~~l~~~G~~V~~~~r~ 40 (264)
T 2pd6_A 14 GAGSGIGRAVSVRLAGEGATVAACDLD 40 (264)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 444555558899999999999988643
No 497
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=21.34 E-value=1e+02 Score=26.97 Aligned_cols=41 Identities=20% Similarity=0.085 Sum_probs=25.4
Q ss_pred cccCCCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 102 IEKDSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 102 ~~~~~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
...-.++|||.+-+. .+|.+ +-..+.+.|.+.||+|.=+.+
T Consensus 14 ~~~~~~~MkIaIgsD-------haG~~-lK~~i~~~L~~~G~eV~D~G~ 54 (169)
T 3ph3_A 14 LVPRGSHMKIGIGSD-------HGGYN-LKREIADFLKKRGYEVIDFGT 54 (169)
T ss_dssp -------CEEEEEEC-------GGGHH-HHHHHHHHHHHTTCEEEECCC
T ss_pred CcccCCCCEEEEEeC-------chHHH-HHHHHHHHHHHCCCEEEEcCC
Confidence 344456799998873 35533 455788889999999987754
No 498
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=21.24 E-value=2.9e+02 Score=27.28 Aligned_cols=100 Identities=9% Similarity=0.092 Sum_probs=54.5
Q ss_pred hHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHh--CCEEEEcCC-CCCCchHHHHHHh---cCCceEE-eCCCCccccc
Q 043397 450 QKDFEDLANLHNKGTSTRILLMYSEELSHMLYAA--ADIVLVPSI-YEPCGLAQMIGMR---YGAVPVV-RKTGGLADTV 522 (596)
Q Consensus 450 ~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~--aDi~l~PS~-~E~~gl~~lEAma---~G~pvI~-s~~gg~~e~i 522 (596)
...+....++.|. .| ...-+.++....+.. .|++++--. -+.-|+.+++.+. ..+|+|. |..+.....+
T Consensus 13 ~~~l~~~L~~~g~--~v--~~a~~~~eal~~l~~~~~DlvllDi~mP~~dG~ell~~lr~~~~~~pvI~lT~~~~~~~~~ 88 (368)
T 3dzd_A 13 TSSLSAILEEEGY--HP--DTAKTLREAEKKIKELFFPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVITGHGSVDTAV 88 (368)
T ss_dssp HHHHHHHHHHTTC--EE--EEESSHHHHHHHHHHBCCSEEEEESEETTEETTTHHHHHHHHCTTCEEEEEECSSCCHHHH
T ss_pred HHHHHHHHHHcCC--EE--EEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEEeCCCCHHHHH
Confidence 3444444444332 12 233344444444443 466665332 2334555555443 4566665 4444332222
Q ss_pred cccCCCCCCCccceEEEeCCCHHHHHHHHHHHHHhc
Q 043397 523 FDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHF 558 (596)
Q Consensus 523 ~~~~~~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~ 558 (596)
.-.. .|..+|+..|.+.++|...|.+++...
T Consensus 89 ~a~~-----~Ga~~yl~KP~~~~~L~~~i~~~l~~~ 119 (368)
T 3dzd_A 89 KAIK-----KGAYEFLEKPFSVERFLLTIKHAFEEY 119 (368)
T ss_dssp HHHH-----HTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHh-----cCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 2111 167899999999999999999998743
No 499
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=21.20 E-value=72 Score=30.66 Aligned_cols=34 Identities=9% Similarity=-0.154 Sum_probs=24.0
Q ss_pred CCceeEEEEeecccccccccCHHHHHhHHHHHHHhcCCeEEEEec
Q 043397 106 SNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLP 150 (596)
Q Consensus 106 ~~~mkIl~is~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi~p 150 (596)
..+++|++|. ||.+ -...|..|+++|++|+|+-.
T Consensus 20 ~~~~~vvIIG---------~G~a--Gl~aA~~l~~~g~~v~vie~ 53 (338)
T 3itj_A 20 HVHNKVTIIG---------SGPA--AHTAAIYLARAEIKPILYEG 53 (338)
T ss_dssp -CEEEEEEEC---------CSHH--HHHHHHHHHHTTCCCEEECC
T ss_pred CCCCCEEEEC---------cCHH--HHHHHHHHHHCCCCEEEEec
Confidence 3457899984 3322 24678888899999999964
No 500
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=21.14 E-value=1.5e+02 Score=28.82 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=0.0
Q ss_pred eeCCCCCCCcCCCCcCCCccccCCCCchhhhhhHHHHHhhcCCCCCCCccEEEEEecccccCCHHHHHHHHHHHHHcCCE
Q 043397 358 ILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQ 437 (596)
Q Consensus 358 I~nGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~~~~~l~l~~~~~~~~il~iGrl~~~KGi~~ll~A~~~l~~~~~~ 437 (596)
|-||-|-+...|. .-..+--.+++.+|- -+...|.|+|-+....=.+.++.++.++ ++++
T Consensus 124 VINag~G~~~HPt---------------QaLaDl~Ti~e~~g~---l~gl~va~vGD~~~~rva~Sl~~~~~~~--~g~~ 183 (310)
T 3csu_A 124 VLNAGDGSNQHPT---------------QTLLDLFTIQETQGR---LDNLHVAMVGDLKYGRTVHSLTQALAKF--DGNR 183 (310)
T ss_dssp EEEEEETTSCCHH---------------HHHHHHHHHHHHHSC---SSSCEEEEESCTTTCHHHHHHHHHHHTS--SSCE
T ss_pred EEcCccCCCCCch---------------HHHHHHHHHHHHhCC---cCCcEEEEECCCCCCchHHHHHHHHHhC--CCCE
Q ss_pred EEEEecCCCCcchHHHHHHHHHcCCCCcEEEEeccCHHHHHHHHHhCCEEEEcCCCC
Q 043397 438 MILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYE 494 (596)
Q Consensus 438 lvIvG~~~~g~~~~~l~~~~~~~~~~~~V~~~g~~~~~~l~~~~a~aDi~l~PS~~E 494 (596)
+.+++. ..=...+.+.+.+++.|.. +.+.....+ .++.||++......+
T Consensus 184 v~~~~P-~~~~~~~~~~~~~~~~g~~--~~~~~d~~e-----av~~aDvvyt~~~q~ 232 (310)
T 3csu_A 184 FYFIAP-DALAMPQYILDMLDEKGIA--WSLHSSIEE-----VMAEVDILYMTRVQK 232 (310)
T ss_dssp EEEECC-GGGCCCHHHHHHHHHTTCC--EEECSCGGG-----TTTTCSEEEECC---
T ss_pred EEEECC-cccccCHHHHHHHHHcCCe--EEEEcCHHH-----HhcCCCEEEECCccc
Done!