Citrus Sinensis ID: 043397

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590------
MECAIAGKLSSTSSYLVNTRRNGMKRTKLMANHNMFYSSKSMISLPILAHTNPSLAVVTEKLGCPADFGFGELVWPTPGDEIPFWKNKFPSRYASLEAPAEIEKDSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIMENDNSWNNAAGKYMEIYNSIRVG
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHccccEEEEEcccccccHHHHccccEEEEEEEcccccEEEEEEEEEEEccEEEEEECccccccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHcccccccccEEEEEccccccccccHHHHHHcccccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHccccccHHHHHHccccEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHccccccccccEEEEEccccccccHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHcccEEEcccccccccHHHHHHccccccccccccccccccccccccccccccccCEEcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcc
*******************************NHNMFYSSKSMISLPILAHTNPSLAVVTEKLGCPADFGFGELVWPTPGDEIPFWKNKFP********PAEIEKDSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIMENDNSWNNAAGKYMEIYNSIRVG
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MECAIAGKLSSTSSYLVNTRRNGMKRTKLMANHNMFYSSKSMISLPILAHTNPSLAVVTEKLGCPADFGFGELVWPTPGDEIPFWKNKFPSRYASLEAPAEIEKDSNLMHIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSSIPVIFIEPSNQFFKGKNVYGGSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGHNPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLVVCITRLVAQKGLHLITHAIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAVPVVRKTGGLADTVFDVDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHFIDKPEEWNRIVQKIMENDNSWNNAAGKYMEIYNSIRVG

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Probable glycogen synthase 2 Synthesizes alpha-1,4-glucan chains using ADP-glucose.probableQ8Z0Q9
Glycogen synthase 1 Synthesizes alpha-1,4-glucan chains using ADP-glucose.probableQ3M9U1
Glycogen synthase Synthesizes alpha-1,4-glucan chains using ADP-glucose.probableQ6MAS9

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
2.-.-.-Transferases.probable
2.4.-.-Glycosyltransferases.probable
2.4.1.-Hexosyltransferases.probable
2.4.1.21Starch synthase.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1RZU, chain A
Confidence level:very confident
Coverage over the Query: 109-595
View the alignment between query and template
View the model in PyMOL
Template: 3VUE, chain A
Confidence level:very confident
Coverage over the Query: 107-594
View the alignment between query and template
View the model in PyMOL