BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043399
(438 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 112/207 (54%), Gaps = 4/207 (1%)
Query: 63 LQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGV 122
LQ F SCP AE ++ V + SG+AP +R+ F DC + GCD+SVLLD
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 123 DSEKMSLPSE-SLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHT 181
+EK ++P+ SL F VI K +E CP VS +D LA AAR+ LAG Y + +
Sbjct: 62 TAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPS 121
Query: 182 GRRDSRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHCIFFKS 241
GRRD ++LA A ++P P + + + SFA++ E VT AH IGV HC F +
Sbjct: 122 GRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTN 181
Query: 242 HLCNLGR---INESLDPGFLNLLRSKC 265
L N I+ +L P + LLR+ C
Sbjct: 182 RLYNFNSGSGIDPTLSPSYAALLRNTC 208
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 138 bits (347), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 114/207 (55%), Gaps = 5/207 (2%)
Query: 63 LQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGV 122
L +F CP A I++ V + + + LRL F DC ++GCD+SVLLD+
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 123 DSEKMSLP-SESLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHT 181
EK + P + S+ F VI+ IK +E +CPGVVS +D LA+AAR+ VV GG + +
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 182 GRRDSRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHCIFFKS 241
GRRDS A A +LP P +L +++F+++GF +E VT AH IG C F++
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRT 181
Query: 242 HLCNLGRINESLDPGFLNLLRSKCRNV 268
+ N I DP + L++ C +V
Sbjct: 182 RIYNESNI----DPTYAKSLQANCPSV 204
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 125 bits (313), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 113/209 (54%), Gaps = 4/209 (1%)
Query: 67 FNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGVDSEK 126
F R++CP + +++ + + + +RL F DC ++GCD SVLL+ D ++SE+
Sbjct: 6 FYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTIESEQ 65
Query: 127 MSLPS-ESLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHTGRRD 185
+LP+ S+ V+N IK +E CP VS +D LA+AA VL GGP +P+ GRRD
Sbjct: 66 DALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPLGRRD 125
Query: 186 SRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHCIFFKSHL-- 243
S A +A LP P +L + ASFA +G + + VT H G C F + L
Sbjct: 126 SLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFINRLYN 185
Query: 244 -CNLGRINESLDPGFLNLLRSKCRNVHSG 271
N G + +L+ +L +LR++C +G
Sbjct: 186 FSNTGNPDPTLNTTYLEVLRARCPQNATG 214
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 124 bits (312), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 108/216 (50%), Gaps = 4/216 (1%)
Query: 63 LQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGV 122
L F +CP A +R+ + +S + + + +RL F DC + GCD+S+LLD+ +
Sbjct: 3 LNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSI 62
Query: 123 DSEKMSLPS-ESLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHT 181
SEK + P+ S F V++ IK LE CPGVVS SD LALA+ V LAGGP + +
Sbjct: 63 QSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLL 122
Query: 182 GRRDSRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHCIFFKS 241
GRRDS A A +P P L F++ G + + V AH G C F +
Sbjct: 123 GRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFNN 182
Query: 242 HLCNL---GRINESLDPGFLNLLRSKCRNVHSGSAV 274
L N G + +L+ L+ L+ C S S +
Sbjct: 183 RLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTI 218
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 116/207 (56%), Gaps = 6/207 (2%)
Query: 63 LQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGV 122
L +DF +CP+AE +R V + G+A LRL F DC ++GCD+SVLLD +
Sbjct: 9 LSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSATG 68
Query: 123 DSEKMSLPSESL--NRFYVINIIKEDLEEICPG-VVSYSDTLALAAREGVVLAGGPFYPL 179
E+ + P+ +L + F +N I++ LE C G VVS SD LALAAR+ VV++GGP Y +
Sbjct: 69 PGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDYRV 128
Query: 180 HTGRRDSR-LALADIATFELPLPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHCIF 238
GRRDSR A +LP P++++ LA G D + VT H IG+ HC
Sbjct: 129 PLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHCSS 188
Query: 239 FKSHLCNLGRINESLDPGFLNLLRSKC 265
F+ L R + ++ P FL+ L+ C
Sbjct: 189 FEDRL--FPRPDPTISPTFLSRLKRTC 213
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 99/186 (53%), Gaps = 1/186 (0%)
Query: 62 SLQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADG 121
SL F +CP A +R +V +S S + + +RL F DC + GCD+S+LLD +
Sbjct: 3 SLNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGS 62
Query: 122 VDSEKMSLPSESLNR-FYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLH 180
+ SEK + P+ + R F V++ IK LE CPGVVS +D LALA++ V L+GGP + +
Sbjct: 63 IISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVD 122
Query: 181 TGRRDSRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHCIFFK 240
GRRD+ A A +P P L + F++ G + + V AH G C F
Sbjct: 123 LGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFS 182
Query: 241 SHLCNL 246
+ L N
Sbjct: 183 NRLFNF 188
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 110/207 (53%), Gaps = 8/207 (3%)
Query: 63 LQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGV 122
L D SCP +R V K+ +A + +RL F DC + GCD+S+LLD G
Sbjct: 2 LSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLD---GA 58
Query: 123 DSEKMSLPS-ESLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHT 181
DSEK+++P+ S F VI+ IK +E CPGVVS +D L LAAR+ VVL+GGP + +
Sbjct: 59 DSEKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVAL 118
Query: 182 GRRDSRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHCIFFKS 241
GR+D +A + A LP P L +A F + ++ + V AH G C F +
Sbjct: 119 GRKDGLVANQNSAN-NLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFSN 177
Query: 242 HLCNL---GRINESLDPGFLNLLRSKC 265
L N G + +L+ L+ L++ C
Sbjct: 178 RLFNFTGAGNPDATLETSLLSNLQTVC 204
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 102/204 (50%), Gaps = 5/204 (2%)
Query: 67 FNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGVDSEK 126
F +SCP +R + +S +A + LRL F DC + GCD+S+LLD +EK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 65
Query: 127 MSLPSESLNR-FYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHTGRRD 185
+ + + R F VI+ +K +E CP VS +D L +AA++ V LAGGP + + GRRD
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 125
Query: 186 SRLALADIATFELPLPNADLPETLASFASRGFDL-RETVTFLDAHGIGVIHCIFFKSHL- 243
S A D+A LP P LP+ SF + G + + V H G C F L
Sbjct: 126 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFIMDRLY 185
Query: 244 --CNLGRINESLDPGFLNLLRSKC 265
N G + +L+ +L LR C
Sbjct: 186 NFSNTGLPDPTLNTTYLQTLRGLC 209
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 102/204 (50%), Gaps = 5/204 (2%)
Query: 67 FNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGVDSEK 126
F +SCP +R + +S +A + LRL F DC + GCD+S+LLD +EK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 65
Query: 127 MSLPSESLNR-FYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHTGRRD 185
+ + + R F VI+ +K +E CP VS +D L +AA++ V LAGGP + + GRRD
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 125
Query: 186 SRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLD-AHGIGVIHCIFFKSHL- 243
S A D+A LP P LP+ SF + G + + L H G C F L
Sbjct: 126 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFIMDRLY 185
Query: 244 --CNLGRINESLDPGFLNLLRSKC 265
N G + +L+ +L LR C
Sbjct: 186 NFSNTGLPDPTLNTTYLQTLRGLC 209
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 102/204 (50%), Gaps = 5/204 (2%)
Query: 67 FNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGVDSEK 126
F +SCP +R + +S +A + LRL F DC + GCD+S+LLD +EK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 66
Query: 127 MSLPSESLNR-FYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHTGRRD 185
+ + + R F VI+ +K +E CP VS +D L +AA++ V LAGGP + + GRRD
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 126
Query: 186 SRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLD-AHGIGVIHCIFFKSHL- 243
S A D+A LP P LP+ SF + G + + L H G C F L
Sbjct: 127 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 186
Query: 244 --CNLGRINESLDPGFLNLLRSKC 265
N G + +L+ +L LR C
Sbjct: 187 NFSNTGLPDPTLNTTYLQTLRGLC 210
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 102/204 (50%), Gaps = 5/204 (2%)
Query: 67 FNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGVDSEK 126
F +SCP +R + +S +A + LRL F DC + GCD+S+LLD +EK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 66
Query: 127 MSLPSESLNR-FYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHTGRRD 185
+ + + R F VI+ +K +E CP VS +D L +AA++ V LAGGP + + GRRD
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 126
Query: 186 SRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLD-AHGIGVIHCIFFKSHL- 243
S A D+A LP P LP+ SF + G + + L H G C F L
Sbjct: 127 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 186
Query: 244 --CNLGRINESLDPGFLNLLRSKC 265
N G + +L+ +L LR C
Sbjct: 187 NFSNTGLPDPTLNTTYLQTLRGLC 210
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 102/204 (50%), Gaps = 5/204 (2%)
Query: 67 FNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGVDSEK 126
F +SCP +R + +S +A + LRL F DC + GCD+S+LLD +EK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 65
Query: 127 MSLPSESLNR-FYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHTGRRD 185
+ + + R F VI+ +K +E CP VS +D L +AA++ V LAGGP + + GRRD
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 125
Query: 186 SRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLD-AHGIGVIHCIFFKSHL- 243
S A D+A LP P LP+ SF + G + + L H G C F L
Sbjct: 126 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 185
Query: 244 --CNLGRINESLDPGFLNLLRSKC 265
N G + +L+ +L LR C
Sbjct: 186 NFSNTGLPDPTLNTTYLQTLRGLC 209
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 102/204 (50%), Gaps = 5/204 (2%)
Query: 67 FNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGVDSEK 126
F +SCP +R + +S +A + LRL F DC + GCD+S+LLD +EK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTSFRTEK 66
Query: 127 MSLPSESLNR-FYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHTGRRD 185
+ + + R F VI+ +K +E CP VS +D L +AA++ V LAGGP + + GRRD
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 126
Query: 186 SRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLD-AHGIGVIHCIFFKSHL- 243
S A D+A LP P LP+ SF + G + + L H G C F L
Sbjct: 127 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 186
Query: 244 --CNLGRINESLDPGFLNLLRSKC 265
N G + +L+ +L LR C
Sbjct: 187 NFSNTGLPDPTLNTTYLQTLRGLC 210
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 111 bits (278), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 102/204 (50%), Gaps = 5/204 (2%)
Query: 67 FNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGVDSEK 126
F +SCP +R + +S +A + LRL F DC + GCD+S+LLD +EK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 66
Query: 127 MSLPSESLNR-FYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHTGRRD 185
+ + + R F VI+ +K +E CP VS +D L +AA++ V LAGGP + + GRRD
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 126
Query: 186 SRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLD-AHGIGVIHCIFFKSHL- 243
S A D+A LP P LP+ SF + G + + L H G C F L
Sbjct: 127 SLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 186
Query: 244 --CNLGRINESLDPGFLNLLRSKC 265
N G + +L+ +L LR C
Sbjct: 187 NFSNTGLPDPTLNTTYLQTLRGLC 210
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 111 bits (278), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 102/204 (50%), Gaps = 5/204 (2%)
Query: 67 FNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGVDSEK 126
F +SCP +R + +S +A + LRL F DC + GCD+S+LLD +EK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 65
Query: 127 MSLPSESLNR-FYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHTGRRD 185
+ + + R F VI+ +K +E CP VS +D L +AA++ V LAGGP + + GRRD
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 125
Query: 186 SRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLD-AHGIGVIHCIFFKSHL- 243
S A D+A LP P LP+ SF + G + + L H G C F L
Sbjct: 126 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 185
Query: 244 --CNLGRINESLDPGFLNLLRSKC 265
N G + +L+ +L LR C
Sbjct: 186 NFSNTGLPDPTLNTTYLQTLRGLC 209
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 102/204 (50%), Gaps = 5/204 (2%)
Query: 67 FNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGVDSEK 126
F +SCP +R + +S +A + LRL F DC + GCD+S+LLD +EK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 65
Query: 127 MSLPSESLNR-FYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHTGRRD 185
+ + + R F VI+ +K +E CP VS +D L +AA++ V LAGGP + + GRRD
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 125
Query: 186 SRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLD-AHGIGVIHCIFFKSHL- 243
S A D+A LP P LP+ SF + G + + L H G C F L
Sbjct: 126 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 185
Query: 244 --CNLGRINESLDPGFLNLLRSKC 265
N G + +L+ +L LR C
Sbjct: 186 NFSNTGLPDPTLNTTYLQTLRGLC 209
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 102/204 (50%), Gaps = 5/204 (2%)
Query: 67 FNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGVDSEK 126
F +SCP +R + +S +A + LRL F DC + GCD+S+LLD +EK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 66
Query: 127 MSLPSESLNR-FYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHTGRRD 185
+ + + R F VI+ +K +E CP VS +D L +AA++ V LAGGP + + GRRD
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 126
Query: 186 SRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLD-AHGIGVIHCIFFKSHL- 243
S A D+A LP P LP+ SF + G + + L H G C F L
Sbjct: 127 SLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 186
Query: 244 --CNLGRINESLDPGFLNLLRSKC 265
N G + +L+ +L LR C
Sbjct: 187 NFSNTGLPDPTLNTTYLQTLRGLC 210
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 101/204 (49%), Gaps = 5/204 (2%)
Query: 67 FNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGVDSEK 126
F +SCP +R + +S +A + L L F DC + GCD+S+LLD +EK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTSFRTEK 65
Query: 127 MSLPSESLNR-FYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHTGRRD 185
+ + + R F VI+ +K +E CP VS +D L +AA++ V LAGGP + + GRRD
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 125
Query: 186 SRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLD-AHGIGVIHCIFFKSHL- 243
S A D+A LP P LP+ SF + G + + L H G C F L
Sbjct: 126 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 185
Query: 244 --CNLGRINESLDPGFLNLLRSKC 265
N G + +L+ +L LR C
Sbjct: 186 NFSNTGLPDPTLNTTYLQTLRGLC 209
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 108 bits (269), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 101/204 (49%), Gaps = 5/204 (2%)
Query: 67 FNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGVDSEK 126
F +SCP +R + +S +A + LRL F DC + GCD+S+LLD +EK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 66
Query: 127 MSLPSESLNR-FYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHTGRRD 185
+ + + R F VI+ +K +E CP VS +D L +AA++ V LAGGP + + GRRD
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 126
Query: 186 SRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLD-AHGIGVIHCIFFKSHL- 243
S A D+A LP P LP+ SF + G + + L H G C L
Sbjct: 127 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSIMDRLY 186
Query: 244 --CNLGRINESLDPGFLNLLRSKC 265
N G + +L+ +L LR C
Sbjct: 187 NFSNTGLPDPTLNTTYLQTLRGLC 210
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 12/169 (7%)
Query: 79 IRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGVDSEKMSLPSESL---N 135
+RA + + + + P+ +RL + + + C + +S M E L N
Sbjct: 12 LRADIEDMISEKLELGPSLIRLAWHEAASYDC-----FKKDGSPNSASMRFKPECLYAGN 66
Query: 136 RFYVINIIKEDLEEICPGV--VSYSDTLALAAREGVVLAGGPFYPLHTGRRDSRLALADI 193
+ ++I ++ LE + +SY+D LAA + GGP P GR D++
Sbjct: 67 K--GLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCG 124
Query: 194 ATFELPLPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHCIFFKSH 242
LP + F GF+ +ETV + AH G H F H
Sbjct: 125 PDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGETHIEFSGYH 173
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 36/88 (40%)
Query: 155 VSYSDTLALAAREGVVLAGGPFYPLHTGRRDSRLALADIATFELPLPNADLPETLASFAS 214
+SY+D LAA + GGP P GR D++ LP + F
Sbjct: 85 ISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFRR 144
Query: 215 RGFDLRETVTFLDAHGIGVIHCIFFKSH 242
GF+ +ETV + AH G H F H
Sbjct: 145 LGFNDQETVALIGAHTCGECHIEFSGYH 172
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 36/88 (40%)
Query: 155 VSYSDTLALAAREGVVLAGGPFYPLHTGRRDSRLALADIATFELPLPNADLPETLASFAS 214
+SY+D LAA + GGP P GR D++ LP + F
Sbjct: 86 ISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFRR 145
Query: 215 RGFDLRETVTFLDAHGIGVIHCIFFKSH 242
GF+ +ETV + AH G H F H
Sbjct: 146 LGFNDQETVALIGAHTCGECHIEFSGYH 173
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 69/187 (36%), Gaps = 27/187 (14%)
Query: 57 GEPYDSLQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLL 116
G+ Y ++ D+ + + +A+ ++R + + AP LRL + DS
Sbjct: 1 GKSYPTVSPDYQK-AIEKAKRKLRGFI-----AEKKCAPLILRLAWHSAGT--FDSKTKT 52
Query: 117 DEADGVDSEKMSLPSESLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPF 176
G + L + N + + E ++E P +VSY+D LA V + GGP
Sbjct: 53 GGPFGTIKHQAELAHGANNGLDIAVRLLEPIKEQFP-IVSYADFYQLAGVVAVEITGGPE 111
Query: 177 YPLHTGRRDSRLALADIATFELPLPNADLPETLASF--------ASRGFDLRETVTFLDA 228
P H GR D P P LP+ + G ++ V
Sbjct: 112 VPFHPGREDK----------PEPPPEGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGG 161
Query: 229 HGIGVIH 235
H IG H
Sbjct: 162 HTIGAAH 168
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 65/184 (35%), Gaps = 27/184 (14%)
Query: 60 YDSLQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEA 119
Y ++ D+ + + +A+ ++R + R AP LRL CS D
Sbjct: 16 YPTVSADYQK-AVEKAKKKLRGFIAEKR-----CAPLMLRLAA--CSAGTFDKGTKTGGP 67
Query: 120 DGVDSEKMSLPSESLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPL 179
G L + N + + E L+ P ++SY+D LA V + GGP P
Sbjct: 68 FGTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPF 126
Query: 180 HTGRRDSRLALADIATFELPLPNADLPETLASF--------ASRGFDLRETVTFLDAHGI 231
H GR D P P LP+ + G ++ V H I
Sbjct: 127 HPGREDK----------PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTI 176
Query: 232 GVIH 235
G H
Sbjct: 177 GAAH 180
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 66/187 (35%), Gaps = 27/187 (14%)
Query: 57 GEPYDSLQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLL 116
G+ Y ++ D+ + + +A+ ++R + R AP LRL + D
Sbjct: 1 GKSYPTVSADYQK-AVEKAKKKLRGFIAEKR-----CAPLMLRLAWHSAGT--FDKGTKT 52
Query: 117 DEADGVDSEKMSLPSESLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPF 176
G L + N + + E L+ P ++SY+D LA V + GGP
Sbjct: 53 GGPFGTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPE 111
Query: 177 YPLHTGRRDSRLALADIATFELPLPNADLPETLASF--------ASRGFDLRETVTFLDA 228
P H GR D P P LP+ + G ++ V
Sbjct: 112 VPFHPGREDK----------PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGG 161
Query: 229 HGIGVIH 235
H IG H
Sbjct: 162 HTIGAAH 168
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 66/187 (35%), Gaps = 27/187 (14%)
Query: 57 GEPYDSLQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLL 116
G+ Y ++ D+ + + +A+ ++R + R AP L+L + D
Sbjct: 1 GKSYPTVSADYQK-AVEKAKKKLRGFIAEKR-----CAPLMLKLAWHSAGT--FDKGTKT 52
Query: 117 DEADGVDSEKMSLPSESLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPF 176
G L + N + + E L+ P ++SY+D LA V + GGP
Sbjct: 53 GGPFGTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPE 111
Query: 177 YPLHTGRRDSRLALADIATFELPLPNADLPETLASF--------ASRGFDLRETVTFLDA 228
P H GR D P P LP+ + G ++ V
Sbjct: 112 VPFHPGREDK----------PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGG 161
Query: 229 HGIGVIH 235
H IG H
Sbjct: 162 HTIGAAH 168
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 64/184 (34%), Gaps = 27/184 (14%)
Query: 60 YDSLQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEA 119
Y ++ D+ + + +A+ ++R + R AP LRL + D
Sbjct: 16 YPTVSADYQK-AVEKAKKKLRGFIAEKR-----CAPLMLRLAWHSAGT--FDKGTKTGGP 67
Query: 120 DGVDSEKMSLPSESLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPL 179
G L + N + + E L+ P ++SY+D LA V + GGP P
Sbjct: 68 FGTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPF 126
Query: 180 HTGRRDSRLALADIATFELPLPNADLPETLASF--------ASRGFDLRETVTFLDAHGI 231
H GR D P P LP+ + G ++ V H I
Sbjct: 127 HPGREDK----------PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTI 176
Query: 232 GVIH 235
G H
Sbjct: 177 GAAH 180
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 64/184 (34%), Gaps = 27/184 (14%)
Query: 60 YDSLQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEA 119
Y ++ D+ + + +A+ ++R + R AP LRL + D
Sbjct: 16 YPTVSADYQK-AVEKAKKKLRGFIAEKR-----CAPLMLRLAWHSAGT--FDKGTKTGGP 67
Query: 120 DGVDSEKMSLPSESLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPL 179
G L + N + + E L+ P ++SY+D LA V + GGP P
Sbjct: 68 FGTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPF 126
Query: 180 HTGRRDSRLALADIATFELPLPNADLPETLASF--------ASRGFDLRETVTFLDAHGI 231
H GR D P P LP+ + G ++ V H I
Sbjct: 127 HPGREDK----------PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTI 176
Query: 232 GVIH 235
G H
Sbjct: 177 GAAH 180
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 64/184 (34%), Gaps = 27/184 (14%)
Query: 60 YDSLQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEA 119
Y ++ D+ + + +A+ ++R + R AP LRL + D
Sbjct: 16 YPTVSADYQK-AVEKAKKKLRGFIAEKR-----CAPLMLRLAWHSAGT--FDKGTKTGGP 67
Query: 120 DGVDSEKMSLPSESLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPL 179
G L + N + + E L+ P ++SY+D LA V + GGP P
Sbjct: 68 FGTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPF 126
Query: 180 HTGRRDSRLALADIATFELPLPNADLPETLASF--------ASRGFDLRETVTFLDAHGI 231
H GR D P P LP+ + G ++ V H I
Sbjct: 127 HPGREDK----------PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTI 176
Query: 232 GVIH 235
G H
Sbjct: 177 GAAH 180
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 65/184 (35%), Gaps = 27/184 (14%)
Query: 60 YDSLQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEA 119
Y ++ D+ + + +A+ ++R + R AP LRL + S D
Sbjct: 16 YPTVSADYQK-AVEKAKKKLRGFIAEKR-----CAPLMLRLAW--ASAGTFDKGTKTGGP 67
Query: 120 DGVDSEKMSLPSESLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPL 179
G L + N + + E L+ P ++SY+D LA V + GGP P
Sbjct: 68 FGTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPF 126
Query: 180 HTGRRDSRLALADIATFELPLPNADLPETLASF--------ASRGFDLRETVTFLDAHGI 231
H GR D P P LP+ + G ++ V H I
Sbjct: 127 HPGREDK----------PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTI 176
Query: 232 GVIH 235
G H
Sbjct: 177 GAAH 180
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 65/187 (34%), Gaps = 27/187 (14%)
Query: 57 GEPYDSLQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLL 116
G+ Y ++ D+ + + +A+ ++R + R AP LRL D
Sbjct: 1 GKSYPTVSADYQK-AVEKAKKKLRGFIAEKR-----CAPLMLRLAAYSAGT--FDKGTKT 52
Query: 117 DEADGVDSEKMSLPSESLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPF 176
G L + N + + E L+ P ++SY+D LA V + GGP
Sbjct: 53 GGPFGTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPE 111
Query: 177 YPLHTGRRDSRLALADIATFELPLPNADLPETLASF--------ASRGFDLRETVTFLDA 228
P H GR D P P LP+ + G ++ V
Sbjct: 112 VPFHPGREDK----------PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGG 161
Query: 229 HGIGVIH 235
H IG H
Sbjct: 162 HTIGAAH 168
>pdb|1L8K|A Chain A, T Cell Protein-Tyrosine Phosphatase Structure
Length = 314
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 200 LPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHC 236
P+ +PE+ ASF + F +RE+ + HG VIHC
Sbjct: 180 WPDFGVPESPASFLNFLFKVRESGSLNPDHGPAVIHC 216
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 65/187 (34%), Gaps = 27/187 (14%)
Query: 57 GEPYDSLQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLL 116
G+ Y ++ D+ + + +A+ ++R + R AP L L + D
Sbjct: 1 GKSYPTVSADYQK-AVEKAKKKLRGFIAEKR-----CAPLMLALAWHSAGT--FDKGTKT 52
Query: 117 DEADGVDSEKMSLPSESLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPF 176
G L + N + + E L+ P ++SY+D LA V + GGP
Sbjct: 53 GGPFGTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPE 111
Query: 177 YPLHTGRRDSRLALADIATFELPLPNADLPETLASF--------ASRGFDLRETVTFLDA 228
P H GR D P P LP+ + G ++ V
Sbjct: 112 VPFHPGREDK----------PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGG 161
Query: 229 HGIGVIH 235
H IG H
Sbjct: 162 HTIGAAH 168
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 63/184 (34%), Gaps = 27/184 (14%)
Query: 60 YDSLQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEA 119
Y ++ D+ + + +A+ ++R + R AP LRL D
Sbjct: 16 YPTVSADYQK-AVEKAKKKLRGFIAEKR-----CAPLMLRLAAHSAGT--FDKGTKTGGP 67
Query: 120 DGVDSEKMSLPSESLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPL 179
G L + N + + E L+ P ++SY+D LA V + GGP P
Sbjct: 68 FGTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPF 126
Query: 180 HTGRRDSRLALADIATFELPLPNADLPETLASF--------ASRGFDLRETVTFLDAHGI 231
H GR D P P LP+ + G ++ V H I
Sbjct: 127 HPGREDK----------PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTI 176
Query: 232 GVIH 235
G H
Sbjct: 177 GAAH 180
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 155 VSYSDTLALAAREGVVLAGGPFYPLHTGRRDSRLALADIATFELPLPNADLPETLAS--- 211
V+Y+D LA+ + AGGP P+ GR D + + E LP+A P
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVD--VTEPEQCPEEGRLPDAGPPSPAQHLRD 144
Query: 212 -FASRGFDLRETVTFLDAHGIG 232
F G + +E V AH +G
Sbjct: 145 VFYRMGLNDKEIVALSGAHTLG 166
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 32/90 (35%), Gaps = 18/90 (20%)
Query: 154 VVSYSDTLALAAREGVVLAGGPFYPLHTGRRDSRLALADIATFELPLPNADLPETLASF- 212
++SY+D LA V + GGP P H GR D P P LP+
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK----------PEPPPEGRLPDATKGSD 150
Query: 213 -------ASRGFDLRETVTFLDAHGIGVIH 235
+ G ++ V H IG H
Sbjct: 151 HLRDVFGKAMGLTDQDIVALSGGHTIGAAH 180
>pdb|3QKP|A Chain A, Protein Tyrosine Phosphatase 1b - Apo W179f Mutant With
Open Wpd-Loop
pdb|3QKQ|A Chain A, Protein Tyrosine Phosphatase 1b - W179f Mutant Bound With
Vanadate
Length = 321
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 200 LPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHC 236
P+ +PE+ ASF + F +RE+ + HG V+HC
Sbjct: 179 FPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHC 215
>pdb|3A5K|A Chain A, Crystal Structure Of Protein-Tyrosine Phosphatase 1b
Length = 304
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 200 LPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHC 236
P+ +PE+ ASF + F +RE+ + HG V+HC
Sbjct: 185 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHC 221
>pdb|4I8N|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b In
Complex With An Inhibitor
[(4-{(2s)-2-(1,3-Benzoxazol-2-Yl)-2-[(4-Fluorophenyl)
Sulfamoyl]ethyl}phenyl)amino](Oxo)acetic Acid
Length = 354
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 200 LPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHC 236
P+ +PE+ ASF + F +RE+ + HG V+HC
Sbjct: 213 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHC 249
>pdb|2AZR|A Chain A, Crystal Structure Of Ptp1b With Bicyclic Thiophene
Inhibitor
pdb|2B07|A Chain A, Crystal Structure Of Ptp1b With Tricyclic Thiophene
Inhibitor.
pdb|2H4G|A Chain A, Crystal Structure Of Ptp1b With Monocyclic Thiophene
Inhibitor
pdb|2H4K|A Chain A, Crystal Structure Of Ptp1b With A Monocyclic Thiophene
Inhibitor
pdb|2HB1|A Chain A, Crystal Structure Of Ptp1b With Monocyclic Thiophene
Inhibitor
pdb|2QBP|A Chain A, Crystal Structure Of Ptp1b-inhibitor Complex
pdb|2QBQ|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2QBR|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2QBS|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2ZMM|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2ZN7|A Chain A, Crystal Structures Of Ptp1b-Inhibitor Complexes
Length = 299
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 200 LPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHC 236
P+ +PE+ ASF + F +RE+ + HG V+HC
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHC 215
>pdb|1BZH|A Chain A, Cyclic Peptide Inhibitor Of Human Ptp1b
Length = 298
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 200 LPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHC 236
P+ +PE+ ASF + F +RE+ + HG V+HC
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHC 215
>pdb|1G7G|A Chain A, Human Ptp1b Catalytic Domain Complexes With Pnu179326
pdb|1JF7|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1JF7|B Chain B, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1KAK|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1KAV|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1T48|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|1T49|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|1T4J|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|2F6T|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6V|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6W|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6Y|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6Z|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F70|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F71|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
Length = 298
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 200 LPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHC 236
P+ +PE+ ASF + F +RE+ + HG V+HC
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHC 215
>pdb|2CM2|A Chain A, Structure Of Protein Tyrosine Phosphatase 1b (P212121)
pdb|2CM3|A Chain A, Structure Of Protein Tyrosine Phosphatase 1b (C2)
pdb|2CM3|B Chain B, Structure Of Protein Tyrosine Phosphatase 1b (C2)
pdb|2CMB|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CMC|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CNE|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
Length = 304
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 200 LPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHC 236
P+ +PE+ ASF + F +RE+ + HG V+HC
Sbjct: 185 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHC 221
>pdb|1BZJ|A Chain A, Human Ptp1b Complexed With Tpicooh
Length = 297
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 200 LPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHC 236
P+ +PE+ ASF + F +RE+ + HG V+HC
Sbjct: 178 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHC 214
>pdb|1NWL|A Chain A, Crystal Structure Of The Ptp1b Complexed With
Sp7343-Sp7964, A Ptyr Mimetic
pdb|1NWE|A Chain A, Ptp1b R47c Modified At C47 With N-[4-(2-{2-[3-(2-Bromo-
Acetylamino)-Propionylamino]-3-Hydroxy-Propionylamino}-
Ethyl)-Phenyl]-Oxalamic Acid
Length = 298
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 200 LPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHC 236
P+ +PE+ ASF + F +RE+ + HG V+HC
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHC 215
>pdb|1GFY|A Chain A, Residue 259 Is A Key Determinant Of Substrate Specificity
Of Protein-Tyrosine Phosphatase 1b And Alpha
Length = 298
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 200 LPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHC 236
P+ +PE+ ASF + F +RE+ + HG V+HC
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHC 215
>pdb|1C86|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
(R47v, D48n) Complexed With
2-(Oxalyl-Amino-4,7-Dihydro-5h-
Thieno[2,3-C]pyran-3-Carboxylic Acid
Length = 298
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 200 LPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHC 236
P+ +PE+ ASF + F +RE+ + HG V+HC
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHC 215
>pdb|3CWE|A Chain A, Ptp1b In Complex With A Phosphonic Acid Inhibitor
Length = 290
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 200 LPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHC 236
P+ +PE+ ASF + F +RE+ + HG V+HC
Sbjct: 186 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHC 222
>pdb|3SME|A Chain A, Structure Of Ptp1b Inactivated By H2o2BICARBONATE
Length = 300
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 200 LPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHC 236
P+ +PE+ ASF + F +RE+ + HG V+HC
Sbjct: 181 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHC 217
>pdb|2F6F|A Chain A, The Structure Of The S295f Mutant Of Human Ptp1b
Length = 302
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 200 LPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHC 236
P+ +PE+ ASF + F +RE+ + HG V+HC
Sbjct: 183 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHC 219
>pdb|1ECV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 5-Iodo-2-(Oxalyl-Amino)-Benzoic Acid
pdb|1C83|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 6-(Oxalyl-Amino)-1h-Indole-5-Carboxylic
Acid
pdb|1C84|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 3-(Oxalyl-Amino)-Naphthalene-2-Carboxlic
Acid
pdb|1C85|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino)-Benzoic Acid
pdb|1C87|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With
2-(Oxalyl-Amino-4,7-Dihydro-5h-Thieno[2,3-
C]pyran-3-Carboxylic Acid
pdb|1C88|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino)-4,5,6,7-Tetrahydro-
Thieno[2,3-C]pyridine-3-Carboxylic Acid
Length = 298
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 200 LPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHC 236
P+ +PE+ ASF + F +RE+ + HG V+HC
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHC 215
>pdb|1BZC|A Chain A, Human Ptp1b Catalytic Domain Complexed With Tpi
Length = 321
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 200 LPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHC 236
P+ +PE+ ASF + F +RE+ + HG V+HC
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHC 215
>pdb|2CMA|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|3A5J|A Chain A, Crystal Structure Of Protein-Tyrosine Phosphatase 1b
Length = 327
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 200 LPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHC 236
P+ +PE+ ASF + F +RE+ + HG V+HC
Sbjct: 185 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHC 221
>pdb|1NL9|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 12 Using A Linked-Fragment Strategy
pdb|1NNY|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 23 Using A Linked-fragment Strategy
pdb|1NO6|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 5 Using A Linked-fragment Strategy
pdb|1NZ7|A Chain A, Potent, Selective Inhibitors Of Protein Tyrosine
Phosphatase 1b Using A Second Phosphotyrosine Binding
Site, Complexed With Compound 19.
pdb|1ONY|A Chain A, Oxalyl-aryl-amino Benzoic Acid Inhibitors Of Ptp1b,
Compound 17
pdb|1ONZ|A Chain A, Oxalyl-Aryl-Amino Benzoic Acid Inhibitors Of Ptp1b,
Compound 8b
pdb|1OEM|X Chain X, Ptp1b With The Catalytic Cysteine Oxidized To A
Sulfenyl-Amide Bond
pdb|1OES|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1PXH|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b With
Potent And Selective Bidentate Inhibitor Compound 2
pdb|1PH0|A Chain A, Non-Carboxylic Acid-Containing Inhibitor Of Ptp1b
Targeting The Second Phosphotyrosine Site
pdb|1PYN|A Chain A, Dual-Site Potent, Selective Protein Tyrosine Phosphatase
1b Inhibitor Using A Linked Fragment Strategy And A
Malonate Head On The First Site
pdb|1Q1M|A Chain A, A Highly Efficient Approach To A Selective And Cell Active
Ptp1b Inhibitors
pdb|1QXK|A Chain A, Monoacid-Based, Cell Permeable, Selective Inhibitors Of
Protein Tyrosine Phosphatase 1b
pdb|1SUG|A Chain A, 1.95 A Structure Of Apo Protein Tyrosine Phosphatase 1b
pdb|1XBO|A Chain A, Ptp1b Complexed With Isoxazole Carboxylic Acid
pdb|1WAX|A Chain A, Protein Tyrosine Phosphatase 1b With Active Site Inhibitor
pdb|2BGD|A Chain A, Structure-Based Design Of Protein Tyrosine Phosphatase-1b
Inhibitors
pdb|2BGE|A Chain A, Structure-Based Design Of Protein Tyrosine Phosphatase-1b
Inhibitors
pdb|2CM7|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CM8|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CNF|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNG|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNH|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNI|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2HNP|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 1b
pdb|2HNQ|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 1b
pdb|2VEU|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEV|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEW|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEX|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEY|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|3D9C|A Chain A, Crystal Structure Ptp1b Complex With Aryl Seleninic Acid
pdb|3EAX|A Chain A, Crystal Structure Ptp1b Complex With Small Molecule
Compound Lzp-6
pdb|3EB1|A Chain A, Crystal Structure Ptp1b Complex With Small Molecule
Inhibitor Lzp-25
pdb|3I7Z|A Chain A, Protein Tyrosine Phosphatase 1b - Transition State Analog
Fo First Catalytic Step
pdb|3I80|A Chain A, Protein Tyrosine Phosphatase 1b - Transition State Analog
Fo Second Catalytic Step
Length = 321
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 200 LPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHC 236
P+ +PE+ ASF + F +RE+ + HG V+HC
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHC 215
>pdb|1G7F|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177496
Length = 298
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 200 LPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHC 236
P+ +PE+ ASF + F +RE+ + HG V+HC
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHC 215
>pdb|1L8G|A Chain A, Crystal Structure Of Ptp1b Complexed With 7-(1,1-dioxo-1h-
Benzo[d]isothiazol-3-yloxymethyl)-2-(oxalyl-amino)-4,7-
Dihydro-5h-thieno[2,3-c]pyran-3-carboxylic Acid
Length = 321
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 200 LPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHC 236
P+ +PE+ ASF + F +RE+ + HG V+HC
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHC 215
>pdb|2NT7|A Chain A, Crystal Structure Of Ptp1b-inhibitor Complex
pdb|2NTA|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
Length = 299
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 200 LPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHC 236
P+ +PE+ ASF + F +RE+ + HG V+HC
Sbjct: 179 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHC 215
>pdb|1LQF|A Chain A, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|B Chain B, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|C Chain C, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|D Chain D, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
Length = 295
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 200 LPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHC 236
P+ +PE+ ASF + F +RE+ + HG V+HC
Sbjct: 191 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHC 227
>pdb|2FJM|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|2FJM|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
Length = 310
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 200 LPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHC 236
P+ +PE+ ASF + F +RE+ + HG V+HC
Sbjct: 191 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHC 227
>pdb|1Q6J|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|1Q6M|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 3
pdb|1Q6N|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 4
pdb|1Q6N|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 4
pdb|1Q6P|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 6
pdb|1Q6P|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 6
pdb|1Q6S|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 9
pdb|1Q6S|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 9
pdb|1Q6T|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 11
pdb|1Q6T|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 11
pdb|2FJN|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|2FJN|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
Length = 310
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 200 LPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHC 236
P+ +PE+ ASF + F +RE+ + HG V+HC
Sbjct: 191 WPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHC 227
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 44/121 (36%), Gaps = 19/121 (15%)
Query: 155 VSYSDTLALAAREGVVLAGGPFYPLHTGRRDSRLALADIATFELPLPNADLPETLAS--F 212
+S D +L V GP P GR D+ D LP+AD F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP---EDTTPDNGRLPDADKDAGYVRTFF 158
Query: 213 ASRGFDLRETVTFLDAHGIGVIHCIFFKSHLCNLG-------RINESLDPGFLNLLRSKC 265
+ RE V + AH +G K+HL N G N + G+LNLL
Sbjct: 159 QRLNMNDREVVALMGAHALG-------KTHLKNSGYEGPWGAANNVFTNEGYLNLLNEDW 211
Query: 266 R 266
+
Sbjct: 212 K 212
>pdb|2Q5T|A Chain A, Full-Length Cholix Toxin From Vibrio Cholerae
pdb|3Q9O|A Chain A, Full-Length Cholix Toxin From Vibrio Cholerae In Complex
With Nad
Length = 642
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 126 KMSLPSESLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGG 174
++ +P SL RFY N E+ EE V+ +S L A G AGG
Sbjct: 538 RVYIPRASLERFYRTNTPLENAEEHITQVIGHSLPLRNEAFTGPESAGG 586
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,463,585
Number of Sequences: 62578
Number of extensions: 518224
Number of successful extensions: 1186
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1099
Number of HSP's gapped (non-prelim): 70
length of query: 438
length of database: 14,973,337
effective HSP length: 102
effective length of query: 336
effective length of database: 8,590,381
effective search space: 2886368016
effective search space used: 2886368016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)