Citrus Sinensis ID: 043400

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
Protein Sequence
MSPKSNMIIKFTEHVVTTDKPIISTPGPQKLVRIILTDADATDSSSDDEQVINHVRRVKRHVKQINLNNHHRRQHQQQQRGQQSNKLQHNKKIKRHAHQPPPQSDVTHRKKFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNPVLTGDDVVSGQRQRTGVDSFDSSDISSLSSPTSVLRYDEFTPFDSCLCYGDGDGDVFGFGYEVPLSLPDLMLSGTSLSEDAFGEFDVNDFLVEV
Secondary Structure (PSIPRED)
ccccccccccccEEEEEcccccccccccccEEEEEEcccccccccccHHHHHcccccccccEEEEEccccccccccccccccccccccccHHccccccccccccccccccccccEEEcccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEEEEEEEEEccccccccEEEEEEEEcccccccccccccccccccHHEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEccccccEEEEEcccccHHHHHHHHHHHHHHHcccccEEcccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEc
Coil and Loop (DISEMBL)
mspksnmiIKFTEHvvttdkpiistpgpqKLVRIILtdadatdsssddeQVINHVRRVKRHVKQINLNNhhrrqhqqqqrgqqsnklqhnkkikrhahqpppqsdvthrkkfrgvrrrpwgrwaaeirdpnrrkrlwlgtfdtpeeaasVYDQAAVKLkganavtnfpnpvltgddvvsgqrqrtgvdsfdssdisslssptsvlrydeftpfdsclcygdgdgdvfgfgyevplslpdlmlsgtslsedafgefdvndFLVEV
Flexible Loop (DISEMBL)
MSPKSNMIIKFTehvvttdkpiistpgpqKLVRIILTDadatdsssddeqvinHVRRVKRHVKQINLNnhhrrqhqqqqrgqQSNKLQHNKKIkrhahqpppqsdvthrkkfrgvrrrpwgrwaaeirdpnrrkrlWLGTFDTPEEAASVYDQAAVKLKGAnavtnfpnpvltgddvvsgQRQRtgvdsfdssdisslssptsvlrYDEFTPFDSCLCYGDGDGDVFGFGYEVPLSLPDLMLSGTSLSEDAFGEFDVNDFLVEV
Low Complexity Region (SEG)
MSPKSNMIIKFTEHVVTTDKPIISTPGPQKLVRIILtdadatdsssddEQVINHVRRVKRHVKQINLNNhhrrqhqqqqrgqqSNKLQHNKKIKRHAHQPPPQSDVTHRKKFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNPVLTGDDVVSGQRQRTGVdsfdssdisslssptsVLRYDEFTPFDSCLCYgdgdgdvfgfgYEVPLSLPDLMLSGTSLSEDAFGEFDVNDFLVEV
Disordered region (IsUnstruct)
*******IIKFTEHVVTTDKPIISTPGPQKLVRIILTD***************************************************************************GVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNPVLTG*****************************VLRYDEFTPFDSCLCYGDGDGDVFGFGYEVPLSLPDLMLSGTSLSEDAFGEFDVNDFL***
Disordered Region (DISOPRED)
********************************RIILTDADAT************************************************************************VRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNF***********************************************SCLCYGDGDGDVFGFGYEVPLSLPDL***********FGEFDVNDFLVEV
Disordered Region (DISEMBL)
MSPKSNMIIKFTEHVVTTDKPIISTPGPQKLVRIILTDA*********EQVINHVRRVKRHVKQINLNN****************************************KKFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNPVLTGDDVVSGQR*******************TSVLRYDEFTPFDSCLCYGDGDGDVFGFGYEVPLSLPDLMLSGTSLSEDAFGEFDVNDFLVEV
Disordered Region (DISPRO)
****SNMIIKFTEHVVTTDKPIISTPGPQKLVRIILTDAD************NHVRRVKRHVKQINLNN***************************************RKKFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNP**************************************************************V**SLP***************EFDVNDFLVEV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSPKSNMIIKFTEHVVTTDKPIISTPGPQKLVRIILTDADATDSSSDDEQVINHVRRVKRHVKQINLNNHHRRQHQQQQRGQQSNKLQHNKKIKRHAHQPPPQSDVTHRKKFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNPVLTGDDVVSGQRQRTGVDSFDSSDISSLSSPTSVLRYDEFTPFDSCLCYGDGDGDVFGFGYEVPLSLPDLMLSGTSLSEDAFGEFDVNDFLVEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	264	2.2.26 [Sep-21-2011]
O04682	248	Pathogenesis-related gene	N/A	no	0.909	0.967	0.472	2e-46
Q9SUE3	335	Ethylene-responsive trans	yes	no	0.761	0.6	0.407	1e-33
O82503	287	Ethylene-responsive trans	no	no	0.617	0.567	0.445	3e-29
Q9M374	315	Ethylene-responsive trans	no	no	0.821	0.688	0.383	1e-28
Q9SUQ2	343	Ethylene-responsive trans	no	no	0.621	0.478	0.422	8e-28
O82339	294	Ethylene-responsive trans	no	no	0.678	0.608	0.432	1e-26
Q9FK12	354	Ethylene-responsive trans	no	no	0.602	0.449	0.426	6e-24
O65665	272	Ethylene-responsive trans	no	no	0.511	0.496	0.4	9e-20
Q9C995	161	Ethylene-responsive trans	no	no	0.511	0.838	0.412	1e-19
Q9LYU3	212	Ethylene-responsive trans	no	no	0.265	0.330	0.6	3e-19

>sp|O04682|PTI6_SOLLC Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1

 Score =  185 bits (470), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/271 (47%), Positives = 161/271 (59%), Gaps = 31/271 (11%)

Query: 1   MSPKSNMIIKFTEHVVTTDKPIISTPGP------QKLVRIILTDADATDSSSDDEQVINH 54
           M+  S  +IKFT+H+VTT+K + S          Q++VRIILTDADATDSS D+ +  N 
Sbjct: 1   MTENSVPVIKFTQHIVTTNKHVFSEHNEKSNSELQRVVRIILTDADATDSSDDEGR--NT 58

Query: 55  VRRVKRHVKQINLNNHHRRQHQQQQRGQQSNKLQHNKKIKRHAHQPPPQSDVTHRKKFRG 114
           VRRVKRHV +INL    +    +++R                     P SDVT RKKFRG
Sbjct: 59  VRRVKRHVTEINLMPSTKSIGDRKRRSVS------------------PDSDVTRRKKFRG 100

Query: 115 VRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFP-NPVLT 173
           VR+RPWGRWAAEIRDP R KR+WLGT+DTPEEAA VYD+AAVKLKG +AVTNFP +    
Sbjct: 101 VRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFPVSTTAE 160

Query: 174 GDDVVSGQRQRTGVDSFDSSDISSLSSPTSVLRYDEFTPFDSCLCYGDGDGDVFGFGYEV 233
               V+     +  D  D S+     SPTSVL  ++F PFD+    G  + D FGF  + 
Sbjct: 161 VTVTVTETETESVADGGDKSENDVALSPTSVLCDNDFAPFDNL---GFCEVDAFGFDVDS 217

Query: 234 PLSLPDLMLSGTSLSEDAFGEFDVNDFLVEV 264
              LPD  ++      D FGEFD +DF +E 
Sbjct: 218 LFRLPDFAMTEKYYG-DEFGEFDFDDFALEA 247

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants.
Solanum lycopersicum (taxid: 4081)

>sp|Q9SUE3|CRF4_ARATH Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=1 SV=2

 Score =  143 bits (360), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/226 (40%), Positives = 124/226 (54%), Gaps = 25/226 (11%)

Query: 9   IKFTEHVVTTDKPI--------ISTPGPQKLVRIILTDADATDSSSDDEQVINHVRRVKR 60
           +K+TEH     K           S     +LVR+ +TD DATDSSSD+E+ +   RRVKR
Sbjct: 12  VKYTEHKTVIRKYTKKSSMERKTSVRDSARLVRVSMTDRDATDSSSDEEEFLFPRRRVKR 71

Query: 61  HVKQINLNNHHRRQHQQQQRGQQS-NKLQHNKKIKRHAHQPPPQSDVTHRKKFRGVRRRP 119
            + +I      R +      G  S +  +  K+I   +    P     ++KK+RGVR+RP
Sbjct: 72  LINEI------RVEPSSSSTGDVSASPTKDRKRINVDSTVQKPSVSGQNQKKYRGVRQRP 125

Query: 120 WGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNF-----PNPVLTG 174
           WG+WAAEIRDP +R+R+WLGTF T EEAA VYD AA+KL+G +A+TNF     P PV   
Sbjct: 126 WGKWAAEIRDPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNFTVQPEPEPVQEQ 185

Query: 175 DDVVSGQRQRTGVDSFDSSDISSLSSPTSVLRYDEFT---PFDSCL 217
           +         +  +S D  D   LSSPTSVL Y  +    P DS +
Sbjct: 186 EQEPESNMSVSISESMD--DSQHLSSPTSVLNYQTYVSEEPIDSLI 229

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O82503|CRF1_ARATH Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=1 SV=1

 Score =  129 bits (323), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/182 (44%), Positives = 111/182 (60%), Gaps = 19/182 (10%)

Query: 30  KLVRIILTDADATDSSSDDEQVINH------VRRVKRHVKQINLNNHHRRQHQQQQRGQQ 83
           +++RI +TD  ATDSSSD+E+ ++        RRVK++VK++ L++              
Sbjct: 11  RILRISVTDPYATDSSSDEEEEVDFDALSTKRRRVKKYVKEVVLDS------------VV 58

Query: 84  SNKLQHNKKIKRHAHQPPPQSDVTHRKKFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDT 143
           S+K +  KK ++      P    T  +KFRGVR+RPWG+WAAEIRDP+RR R+WLGTFDT
Sbjct: 59  SDKEKPMKKKRKKRVVTVPVVVTTATRKFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDT 118

Query: 144 PEEAASVYDQAAVKLKGANAVTNFPNPVLTGDDVVSGQRQRTGVDSFDSSDISSLSSPTS 203
            EEAA VYD AA++L+G NA  NFP P +T ++V     +  GV  F       L SP S
Sbjct: 119 AEEAAIVYDNAAIQLRGPNAELNFPPPPVT-ENVEEASTEVKGVSDFIIGGGECLRSPVS 177

Query: 204 VL 205
           VL
Sbjct: 178 VL 179

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M374|CRF6_ARATH Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=1 SV=1

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/258 (38%), Positives = 134/258 (51%), Gaps = 41/258 (15%)

Query: 9   IKFTEHVVTTDKPIISTPGPQKLVRIILTDADATDSSSDDEQV--INHVRRVKRHVKQIN 66
           +KFTE+   T+     + G  +LVRI +TD  ATDSSSDD+    +  V RVKR+VK+I 
Sbjct: 8   VKFTENRTVTNVAATPSNGSPRLVRITVTDPFATDSSSDDDDNNNVTVVPRVKRYVKEIR 67

Query: 67  LNNHHRRQHQQQQRGQQSNKLQHNKKIKRHAHQPPPQSDVTHR---KKFRGVRRRPWGRW 123
                        +G+ S+     K   +       + DV+     KK+RGVR+RPWG++
Sbjct: 68  FC-----------QGESSSSTAARKGKHKEEESVVVEDDVSTSVKPKKYRGVRQRPWGKF 116

Query: 124 AAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNF-----PNPVLTGDDVV 178
           AAEIRDP+ R R+WLGTF T EEAA  YD+AA+ LKG  A+TNF     P PV+   D+ 
Sbjct: 117 AAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNFLTPPTPTPVI---DLQ 173

Query: 179 SGQRQRTGVDSFDSSDISSLSSPTSVLRYD------------EFTPFDSCLCYGDGDGDV 226
           +      G DS       SL SPTSVLR++            E +P        + +   
Sbjct: 174 TVSACDYGRDSRQ-----SLHSPTSVLRFNVNEETEHEIEAIELSPERKSTVIKEEEESS 228

Query: 227 FGFGYEVPLSLPDLMLSG 244
            G  +  P  LPDL L+G
Sbjct: 229 AGLVFPDPYLLPDLSLAG 246

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUQ2|CRF2_ARATH Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=1 SV=1

 Score =  124 bits (310), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 110/180 (61%), Gaps = 16/180 (8%)

Query: 1   MSPKSNMI---IKFTEHVVTTDKPI--ISTPGPQKLVRIILTDADATDSSSDD-----EQ 50
           M  +  M+   IKFTEH   T   +  ++     +++RI +TD DATDSSSDD     ++
Sbjct: 1   MEAEKKMVLPRIKFTEHKTNTTTIVSELTNTHQTRILRISVTDPDATDSSSDDEEEEHQR 60

Query: 51  VINHVRRVKRHVKQINLNNHHRRQHQQQQRGQQSNKLQHNKKIKRHAHQPP---PQSDVT 107
            ++  RRVK+ V ++ L++           GQ  +K +  + +K  +   P     +  T
Sbjct: 61  FVSKRRRVKKFVNEVYLDSGAVVTGSC---GQMESKKRQKRAVKSESTVSPVVSATTTTT 117

Query: 108 HRKKFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNF 167
             KKFRGVR+RPWG+WAAEIRDP +R RLWLGT++T EEAA VYD AA++L+G +A+TNF
Sbjct: 118 GEKKFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNF 177

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O82339|CRF5_ARATH Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana GN=CRF5 PE=1 SV=1

 Score =  120 bits (301), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/201 (43%), Positives = 112/201 (55%), Gaps = 22/201 (10%)

Query: 17  TTDKPIISTP--GPQKLVRIILTDADATDSSSDDEQVINHVR-RVKRHVKQINLNNHHRR 73
           T  + I STP  G  K+V+II+TD  ATDSSSD+E     V  RVKR+V +I   +    
Sbjct: 11  TVHRKITSTPFDGFPKIVKIIVTDPCATDSSSDEENDNKSVAPRVKRYVDEIRFCDEDDE 70

Query: 74  QHQQQQRGQQSNKLQHNKKIKRHAHQPPPQSDVTHRKKFRGVRRRPWGRWAAEIRDPNRR 133
               ++  ++S                     V    K+RGVR+RPWG++AAEIRDP+ R
Sbjct: 71  PKPARKAKKKSPAAAAENGGDL----------VKSVVKYRGVRQRPWGKFAAEIRDPSSR 120

Query: 134 KRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNP-------VLTGDDVVSGQRQRTG 186
            RLWLGTF T EEAA  YD+AA+++KG NA TNF  P       VL    V+  +   +G
Sbjct: 121 TRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNFLTPPPSPTTEVLPETPVIDLE-TVSG 179

Query: 187 VDSFDSSDISSLSSPTSVLRY 207
            DS   S I SL SPTSVLR+
Sbjct: 180 CDSARESQI-SLCSPTSVLRF 199

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FK12|CRF3_ARATH Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=1 SV=1

 Score =  111 bits (277), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/171 (42%), Positives = 103/171 (60%), Gaps = 12/171 (7%)

Query: 9   IKFTEHVVTTDKPI------ISTPGPQKLVRIILTDADATDSSSDDEQ--VINHVRRVKR 60
           +K+TEH  +  K        +S     K V I  TD DATDSSSD+++   +   RRVKR
Sbjct: 10  LKYTEHKTSMTKYTKKSSEKLSGGKSLKKVSICYTDPDATDSSSDEDEEDFLFPRRRVKR 69

Query: 61  HVKQINLN---NHHRRQHQQQQRGQQSNKLQHNKKIKRHAHQPPPQSDVTHR-KKFRGVR 116
            V +I +    N+       + R + S+     +       +P  +  V+ + KKFRGVR
Sbjct: 70  FVNEITVEPSCNNVVTGVSMKDRKRLSSSSDETQSPASSRQRPNNKVSVSGQIKKFRGVR 129

Query: 117 RRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNF 167
           +RPWG+WAAEIRDP +R+R+WLGTF+T EEAA VYD AA++L+G +A+TNF
Sbjct: 130 QRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNF 180

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O65665|ERF60_ARATH Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana GN=ERF060 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 58/145 (40%), Positives = 76/145 (52%), Gaps = 10/145 (6%)

Query: 26  PGPQKLVRIILTDADATDSSSD--DEQVINHVRRVKRHVKQINLNNHHRRQHQQQQRGQQ 83
           P  ++L++ +      TDSSS      V    +     + Q+     H+ Q+Q  QR   
Sbjct: 13  PFQEELMKALQPYTTNTDSSSPTYSNTVFGFNQTTSLGLNQLTPYQIHQIQNQLNQR--- 69

Query: 84  SNKLQHNKKIKRHAHQPPPQSDVTHRKKFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDT 143
                 N      A +P P  ++T +K +RGVR+R WG+W AEIR P  R RLWLGTFDT
Sbjct: 70  -----RNIISPNLAPKPVPMKNMTAQKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDT 124

Query: 144 PEEAASVYDQAAVKLKGANAVTNFP 168
            EEAA  YD AA KL+G  A  NFP
Sbjct: 125 AEEAAMAYDLAAYKLRGEFARLNFP 149

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C995|ERF70_ARATH Ethylene-responsive transcription factor ERF070 OS=Arabidopsis thaliana GN=ERF070 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 89/160 (55%), Gaps = 25/160 (15%)

Query: 29  QKLVRIILTDADATDSSSDDEQ-----VINHVRRVKRHVKQINLNNHHRRQHQQQQRGQQ 83
           ++++RI  TDA+ATDSSSD++           RR KR VK+I ++               
Sbjct: 2   KRIIRISFTDAEATDSSSDEDTEERGGASQTRRRGKRLVKEIVIDPSD-----------S 50

Query: 84  SNKLQHNKKIKRHAHQPPPQSDVTHR--KKFRGVRRRPWGRWAAEIRD-----PNRRKRL 136
           ++KL   K   R   + P +   T +  KK+RGVR+RPWG+W AEIR        RR RL
Sbjct: 51  ADKLDVCKT--RFKIRIPAEFLKTAKTEKKYRGVRQRPWGKWVAEIRCGRGACKGRRDRL 108

Query: 137 WLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNPVLTGDD 176
           WLGTF+T EEAA  YD A++KL G +A TNF  P    +D
Sbjct: 109 WLGTFNTAEEAALAYDNASIKLIGPHAPTNFGLPAENQED 148

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYU3|EF113_ARATH Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 51/70 (72%)

Query: 102 PQSDVTHRKKFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGA 161
           P  D   R+ +RGVR+RPWG+WAAEIRDP +  R+WLGTF+T EEAA  YD+AA+K KG 
Sbjct: 29  PDQDQPRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGT 88

Query: 162 NAVTNFPNPV 171
            A  NFP  V
Sbjct: 89  KAKLNFPERV 98

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
225434321	285	PREDICTED: pathogenesis-related genes tr	0.848	0.785	0.518	3e-55
224145414	313	AP2/ERF domain-containing transcription	0.946	0.798	0.446	1e-50
224126985	313	AP2/ERF domain-containing transcription	0.939	0.792	0.431	2e-45
350536443	248	pathogenesis-related genes transcription	0.909	0.967	0.472	1e-44
3065895	251	TSI1 [Nicotiana tabacum]	0.856	0.900	0.490	7e-43
356551956	282	PREDICTED: pathogenesis-related genes tr	0.840	0.787	0.463	4e-40
356500950	282	PREDICTED: pathogenesis-related genes tr	0.856	0.801	0.462	5e-40
255586369	259	AP2 domain transcription factor RAP2.3,	0.647	0.660	0.543	7e-40
307136351	276	AP2/ERF domain-containing transcription	0.765	0.731	0.433	5e-34
225462703	341	PREDICTED: ethylene-responsive transcrip	0.712	0.551	0.435	8e-34

>gi|225434321|ref|XP_002265739.1| PREDICTED: pathogenesis-related genes transcriptional activator PTI6 [Vitis vinifera]

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 141/272 (51%), Positives = 168/272 (61%), Gaps = 48/272 (17%)

Query: 9   IKFTEHVVTTDK---PIISTPGPQKL----------VRIILTDADATDSSSDDEQVINHV 55
           +KF+EHVVTT K    + S    + L          VRII TD DATDSSSDDE  +  V
Sbjct: 21  VKFSEHVVTTSKHMQELESVSASECLSGRRRVRHRVVRIIHTDGDATDSSSDDE--VELV 78

Query: 56  RRVKRHVKQINLNNHHRRQHQQQQRGQQSNKLQHNKKIKRHAHQPPPQSDVTHRKKFRGV 115
           +RVKRHV +I+L          Q   +   K    K++ R      P+S+ T RKKFRGV
Sbjct: 79  QRVKRHVTEISL----------QPSVESPQKEPTKKRVLRL-----PESESTRRKKFRGV 123

Query: 116 RRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNPVLTGD 175
           R+RPWGRWAAEIRDP RRKRLWLGT+DTPEEAA VYD+AAV LKG NAVTNFP+ V T  
Sbjct: 124 RQRPWGRWAAEIRDPTRRKRLWLGTYDTPEEAARVYDKAAVSLKGPNAVTNFPSVVKTES 183

Query: 176 DVVSGQRQRTGVDSFDSSDISSL-----SSPTSVLRYDEFTPFDSCLCYGDGDGDVFGFG 230
              +GQ Q         S+  SL     SSPTSVLRY+E  PF+    +G  D D FGF 
Sbjct: 184 VATAGQSQ---------SETCSLPSVTASSPTSVLRYNEEAPFNG---FGYCDVDAFGFD 231

Query: 231 YEVPLSLPDLMLSGTSLSEDAFGEFDVNDFLV 262
           ++VPL+LPD+  S   L ED FGEFD +DFLV
Sbjct: 232 FDVPLTLPDI-FSNKHLEEDEFGEFDPDDFLV 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145414|ref|XP_002325634.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222862509|gb|EEF00016.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 139/311 (44%), Positives = 165/311 (53%), Gaps = 61/311 (19%)

Query: 9   IKFTEHVVTTDKPI--------ISTPGPQKLVRIILTDADATDSSSDDEQVIN----HVR 56
           +KFTEHV  T K I         S    Q+LVRII TD DATDSSSD+ +        VR
Sbjct: 7   VKFTEHVFATKKLIKNQQQQHPSSRIRGQRLVRIIHTDPDATDSSSDEGEEQEQERRFVR 66

Query: 57  RVKRHVKQINLNNHHRRQHQQQQRGQQSNKLQHNKKIKRHAHQPPPQSDVTHRKKFRGVR 116
           RVKR V +I L               +++   H    ++      P SDVT RK FRGVR
Sbjct: 67  RVKRQVSEIRLLEQE--TTAPAAPSSRTSNDDHRDPTRKRPSSRLPVSDVTRRKNFRGVR 124

Query: 117 RRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPN-PVLTGD 175
           +RPWG+WAAEIRDP RRKR+WLGTF+T EEAA+VYD+AAVKLKG +AVTNFP   VLT  
Sbjct: 125 QRPWGKWAAEIRDPTRRKRVWLGTFNTAEEAATVYDRAAVKLKGPDAVTNFPTKSVLTVR 184

Query: 176 DVVSGQR--QRTGVDSFDSSDISSLSSPTSVLRYDEFTPFD---------------SC-- 216
             V G    Q    DS  SS ++ + SPTSVLRY+E TPFD               SC  
Sbjct: 185 ANVDGPSDFQCESCDSPSSSGVNVMPSPTSVLRYEELTPFDPVLTEKAKVIDDHRESCES 244

Query: 217 -----------------------LCYGDGDGDVFGFGYEVPLSLPDLMLSGTSLSEDAFG 253
                                  L YGD D   FGF  +VP  LPDLM  G  + E+ F 
Sbjct: 245 PLRLSMTSPTSVLRYEELTPFDSLAYGDVDA--FGFKIDVPFGLPDLMFPGKFVDEEEF- 301

Query: 254 EFDVNDFLVEV 264
             D++DFLVE 
Sbjct: 302 -VDLDDFLVEA 311

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126985|ref|XP_002319978.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222858354|gb|EEE95901.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 135/313 (43%), Positives = 174/313 (55%), Gaps = 65/313 (20%)

Query: 9   IKFTEHVVTTDKPI------ISTPGPQKLVRIILTDADATDSSSDDEQVI---NHVRRVK 59
           +KFTEHV  T K I       S+   Q+LVRII TD DATDSSSD+E+      +V+RVK
Sbjct: 7   VKFTEHVFITSKLIENQQLHPSSRTRQRLVRIIHTDPDATDSSSDEEEEEQERKYVKRVK 66

Query: 60  RHVKQINLNNHHRRQHQQQQRGQQSNKLQHNKKIKRHAHQPPPQSDVTHRKKFRGVRRRP 119
           R V +I+L                SN  Q  ++ +  +  P P  DV+ +KKFRGVR+RP
Sbjct: 67  RQVSEISLLEQETTAPAAPS-STTSNDDQEPRRKRPSSRLPLP--DVSRQKKFRGVRQRP 123

Query: 120 WGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFP-NPVLT----- 173
           WG+W+AEIRDP RRKR+WLGTFDT EEAA+VYD+AA+KLKG +AVTNFP N V+T     
Sbjct: 124 WGKWSAEIRDPTRRKRVWLGTFDTAEEAATVYDRAALKLKGPDAVTNFPTNSVITEKAHV 183

Query: 174 ---GDDVVSGQRQRTGV-------------------------------------DSFDS- 192
                DV    R+   +                                     +S +S 
Sbjct: 184 NSGSSDVKCESRESPSIRGTANVMASPALVLRYVDLTPSDAVLTEKAKVVDGQRESCESP 243

Query: 193 -SDISSLSSPTSVLRYDEFTPFDSCLCYGDGDGDVFGFGYEVPLSLPDLMLSGTSLSEDA 251
            S +  +SSPTSVL Y+E +PFDS    G GD D FGF  +VPLSLP+ MLSG    ++ 
Sbjct: 244 LSGVHDMSSPTSVLPYEELSPFDS---LGYGDVDAFGFEIDVPLSLPNSMLSGNFFDKEE 300

Query: 252 FGEFDVNDFLVEV 264
           F   D++DFLV+ 
Sbjct: 301 F--VDLDDFLVDA 311

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350536443|ref|NP_001233991.1| pathogenesis-related genes transcriptional activator PTI6 [Solanum lycopersicum] gi|7531181|sp|O04682.1|PTI6_SOLLC RecName: Full=Pathogenesis-related genes transcriptional activator PTI6; AltName: Full=PTO-interacting protein 6 gi|2213785|gb|AAC49741.1| Pti6 [Solanum lycopersicum]

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 128/271 (47%), Positives = 161/271 (59%), Gaps = 31/271 (11%)

Query: 1   MSPKSNMIIKFTEHVVTTDKPIISTPGP------QKLVRIILTDADATDSSSDDEQVINH 54
           M+  S  +IKFT+H+VTT+K + S          Q++VRIILTDADATDSS D+ +  N 
Sbjct: 1   MTENSVPVIKFTQHIVTTNKHVFSEHNEKSNSELQRVVRIILTDADATDSSDDEGR--NT 58

Query: 55  VRRVKRHVKQINLNNHHRRQHQQQQRGQQSNKLQHNKKIKRHAHQPPPQSDVTHRKKFRG 114
           VRRVKRHV +INL    +    +++R                     P SDVT RKKFRG
Sbjct: 59  VRRVKRHVTEINLMPSTKSIGDRKRRSVS------------------PDSDVTRRKKFRG 100

Query: 115 VRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFP-NPVLT 173
           VR+RPWGRWAAEIRDP R KR+WLGT+DTPEEAA VYD+AAVKLKG +AVTNFP +    
Sbjct: 101 VRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFPVSTTAE 160

Query: 174 GDDVVSGQRQRTGVDSFDSSDISSLSSPTSVLRYDEFTPFDSCLCYGDGDGDVFGFGYEV 233
               V+     +  D  D S+     SPTSVL  ++F PFD+    G  + D FGF  + 
Sbjct: 161 VTVTVTETETESVADGGDKSENDVALSPTSVLCDNDFAPFDNL---GFCEVDAFGFDVDS 217

Query: 234 PLSLPDLMLSGTSLSEDAFGEFDVNDFLVEV 264
              LPD  ++      D FGEFD +DF +E 
Sbjct: 218 LFRLPDFAMTEKYYG-DEFGEFDFDDFALEA 247

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3065895|gb|AAC14323.1| TSI1 [Nicotiana tabacum]

 Score =  179 bits (455), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 129/263 (49%), Positives = 157/263 (59%), Gaps = 37/263 (14%)

Query: 9   IKFTEHVVTTDKPI--------ISTPGPQKLVRIILTDADATDSSSDDEQVINHVRRVKR 60
           +KF++H+VT +K +          +   Q++VRIILTDADATDSS D+ Q  + VRRVKR
Sbjct: 16  VKFSQHIVTKNKHVPEQNENSNFHSKFLQRVVRIILTDADATDSSDDEGQ--DTVRRVKR 73

Query: 61  HVKQINLNNHHRRQHQQQQRGQQSNKLQHNKKIKRHAHQPPPQSDVTHRKKFRGVRRRPW 120
           HV +INL                S  L   KK +  +    P +DVT RKKFRGVR+RPW
Sbjct: 74  HVTEINL--------------MPSPNLICEKKRRLVS----PDTDVTRRKKFRGVRQRPW 115

Query: 121 GRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNPVLTGDDVVSG 180
           GRWAAEIRDP R KR+WLGT+DTPEEAA VYD AAVKLKG +AVTNFP  VLT D     
Sbjct: 116 GRWAAEIRDPTRGKRVWLGTYDTPEEAAIVYDAAAVKLKGPDAVTNFPK-VLTADIT--- 171

Query: 181 QRQRTGVDSFDSSDISSLSSPTSVLRYDEFTPFDSCLCYGDGDGDVFGFGYEVPLSLPDL 240
               +  D  + S+     SPTSVLR D+FTP D     G  + D FGF  +    LP+ 
Sbjct: 172 -EMESVTDRGEKSENDFALSPTSVLRNDDFTPSDDL---GFCEVDAFGFDVDSLFRLPEF 227

Query: 241 MLSGTSLSEDAFGEFDVNDFLVE 263
            LS      D FGEFD +DF +E
Sbjct: 228 GLSEKYYG-DEFGEFDFDDFALE 249

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551956|ref|XP_003544338.1| PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like [Glycine max]

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 119/257 (46%), Positives = 151/257 (58%), Gaps = 35/257 (13%)

Query: 29  QKLVRIILTDADATDSSSDDEQVIN---HVRRVKRHVKQIN----LNNHHRRQHQQQQRG 81
           ++L+RII+TD DATDS S DE+        RRV R + QIN    L+++           
Sbjct: 35  RRLLRIIITDHDATDSDSSDEEQQQQQQKTRRVNREITQINMQLPLSHNSSFSPSSSYYS 94

Query: 82  QQSNKLQHNKKIKRHAHQPPPQS-DVTHRKKFRGVRRRPWGRWAAEIRDPNRRKRLWLGT 140
             S   + N K KR   +PPP S +   R KFRGVR+R WGRWAAEIRDP RRKRLWLGT
Sbjct: 95  SASTSSEQNLKCKRPNKKPPPSSAEARRRNKFRGVRQRQWGRWAAEIRDPTRRKRLWLGT 154

Query: 141 FDTPEEAASVYDQAAVKLKGANAVTNFP--------NPVLTGDDVVSGQRQRTGVDSFDS 192
           FDT EEAA+ YD+AAVKLKG NAVTNFP        +P L  D++ S      G  S+  
Sbjct: 155 FDTAEEAATEYDRAAVKLKGPNAVTNFPLAPEATAQSPPLAADNLSSD-----GGASY-- 207

Query: 193 SDISSLSSPTSVLRYD-EFTPFDSCLCYGDGDGDVFGFGYEVPLSLPD------LMLSGT 245
           SD+  ++SPTSVL Y+ + TPFD    +   D D FGF  + PLSLP+      L     
Sbjct: 208 SDL--VASPTSVLAYECDSTPFDG---FRYLDVDAFGFHIDAPLSLPEVNVNVALTCHHG 262

Query: 246 SLSEDAFGEFDVNDFLV 262
              E+AF EFD+++F+ 
Sbjct: 263 KKQEEAFDEFDLDEFMT 279

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500950|ref|XP_003519293.1| PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like [Glycine max]

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 117/253 (46%), Positives = 149/253 (58%), Gaps = 27/253 (10%)

Query: 29  QKLVRIILTDADATDSSSDDEQVINHVR-RVKRHVKQINLN------NHHRRQHQQQQRG 81
           ++L+RII+TD DATDS SD+E+       RVKR + QIN+       +            
Sbjct: 35  RRLLRIIVTDHDATDSDSDEEEEQQQQTTRVKREITQINMQLPLSYNSSFPSSSSYYSSA 94

Query: 82  QQSNKLQHNKKIKRHAHQPPPQSDVTHRK--KFRGVRRRPWGRWAAEIRDPNRRKRLWLG 139
                 + N K KR   +PPP S V  R+  KFRGVR+RPWGRWAAEIRDP RRKRLWLG
Sbjct: 95  SACTSSEQNLKCKRPNKKPPPFSAVVRRRNNKFRGVRQRPWGRWAAEIRDPTRRKRLWLG 154

Query: 140 TFDTPEEAASVYDQAAVKLKGANAVTNFPNPVLTGDDVVSGQRQRTGVDSFDSSDISSLS 199
           TFDT EEAA+ YD+AAVKLKG NAVTNFP   LT +   + +     VD+  S   +S S
Sbjct: 155 TFDTAEEAATEYDRAAVKLKGPNAVTNFP---LTPE--AAAEAPVVSVDNLSSDGGASYS 209

Query: 200 ----SPTSVLRYD-EFTPFDSCLCYGDGDGDVFGFGYEVPLSLPDLMLS-----GTSLSE 249
               SPTSVL Y+ + TPFD    +   D + F F  + PLSLPD+ ++     G    E
Sbjct: 210 DLVASPTSVLAYECDSTPFDG---FRYLDVEAFEFHIDAPLSLPDVNVALTCHHGKKEEE 266

Query: 250 DAFGEFDVNDFLV 262
            AF EFD+++F+ 
Sbjct: 267 VAFDEFDIDEFMT 279

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586369|ref|XP_002533832.1| AP2 domain transcription factor RAP2.3, putative [Ricinus communis] gi|223526224|gb|EEF28546.1| AP2 domain transcription factor RAP2.3, putative [Ricinus communis]

 Score =  170 bits (430), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 100/184 (54%), Positives = 123/184 (66%), Gaps = 13/184 (7%)

Query: 85  NKLQHNKKIKRHAHQPPPQSDVTHRKK-FRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDT 143
           ++ +H + + R      P SDV HRKK FRGVR+RPWGRWAAEIRDP RRKR+WLGTFDT
Sbjct: 83  DEYKHREILTRRRPPTAPGSDVAHRKKKFRGVRQRPWGRWAAEIRDPARRKRVWLGTFDT 142

Query: 144 PEEAASVYDQAAVKLKGANAVTNFPNPVLTGDDVVSGQRQRTGVDSFDSSDISSL-SSPT 202
            EEAA+VYD+AAVKLKG NAVTNFPN V+T   ++          S   S  S++ SSPT
Sbjct: 143 AEEAATVYDRAAVKLKGVNAVTNFPNTVITEKVLLRDNSSNICDSSSCDSPPSAVTSSPT 202

Query: 203 SVLRYDEFTPFDSCLCYGDGDGDVFGFGYEVPLSL--PDLMLSGTSLSEDAFGEFDVNDF 260
           SVLR+DE TPFD   C+G    D FG   E+P+ L   D +LSG   S + F   D++DF
Sbjct: 203 SVLRFDELTPFD---CFG---YDTFGLE-ELPMPLHPADFILSGKQFSGEEF--VDLDDF 253

Query: 261 LVEV 264
           LV+V
Sbjct: 254 LVDV 257

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136351|gb|ADN34165.1| AP2/ERF domain-containing transcription factor [Cucumis melo subsp. melo]

 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 101/233 (43%), Positives = 130/233 (55%), Gaps = 31/233 (13%)

Query: 9   IKFTEHVVTTDKPIISTPGPQKLVRIILTDADATDSSSDDEQVINHVRRVKRHVKQINLN 68
           IKF E    T KP   T    KLVRI  TDADATDSSS +++    VR VKRHV +I L 
Sbjct: 9   IKFRETRTVTHKPAAET----KLVRISYTDADATDSSSGEDEEPILVRHVKRHVTEIRLL 64

Query: 69  NHHRRQHQQQQRGQQSNKLQHNKKIKRHAHQPPPQSDVTHRKKFRGVRRRPWGRWAAEIR 128
                                +KK    +   PP++  +HRK FRGVRRRPWG+WAAEIR
Sbjct: 65  T-----------------TDCSKKAPPKSRANPPRNSESHRK-FRGVRRRPWGKWAAEIR 106

Query: 129 DPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNF----PNPVLTGDDVVS---GQ 181
           DP RR R+WLGT+DT EEAA VYD+AAV+L+G +A+TNF    P+   T    ++    +
Sbjct: 107 DPLRRTRVWLGTYDTAEEAAVVYDEAAVRLRGPSALTNFVAETPHSETTLVTYLTPPPPE 166

Query: 182 RQRTGVDSFDSSDISSLSSPTSVLRYDE--FTPFDSCLCYGDGDGDVFGFGYE 232
            Q T     ++ +  S+ SPTSVLR +E  +   D  L    G  D F + Y+
Sbjct: 167 NQSTAAVVSETKESRSVCSPTSVLRLEEENWRAIDHYLSEESGLEDEFNWLYD 219

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462703|ref|XP_002267400.1| PREDICTED: ethylene-responsive transcription factor CRF4 [Vitis vinifera] gi|147838098|emb|CAN74147.1| hypothetical protein VITISV_018946 [Vitis vinifera]

 Score =  150 bits (378), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 91/209 (43%), Positives = 126/209 (60%), Gaps = 21/209 (10%)

Query: 9   IKFTEHVVTTDK-------PIISTPGPQKLVRIILTDADATDSSSDDEQVINHVRRVKRH 61
           IK+TEH   T+K       P     G  ++VRI +TD DATDSSSD+E  +   +RVKR+
Sbjct: 9   IKYTEHRSITNKQTRQSRRPPEQNSGVPRVVRISVTDPDATDSSSDEEDELFSRQRVKRY 68

Query: 62  VKQINLNNHHRRQH--QQQQRGQQSNKLQHNKKIKRHAHQPPPQSDVTHRKKFRGVRRRP 119
             +IN+    +       ++RG  + ++   ++  + A         T+ +KFRGVR+RP
Sbjct: 69  TNEINIATVSKSIAPVAGRKRGAGAGEMAPCRRPMKVAAP-------TNGRKFRGVRQRP 121

Query: 120 WGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNPVLTGDDVVS 179
           WG+WAAEIRDP RR RLWLGT+DT EEAA VYD AA+KL+G +A+TNF    +T      
Sbjct: 122 WGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIKLRGPDALTNF----VTPPPPPK 177

Query: 180 GQRQRTGVDSFDSSDIS-SLSSPTSVLRY 207
            +   T V  ++S D S +LSSPTSVL +
Sbjct: 178 PEINLTAVSGYESGDESRNLSSPTSVLHF 206

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
TAIR|locus:2136078	287	CRF1 "AT4G11140" [Arabidopsis	0.450	0.414	0.469	4.2e-24
TAIR|locus:2132962	335	CRF4 "AT4G27950" [Arabidopsis	0.594	0.468	0.375	6.8e-24
TAIR|locus:2128429	343	CRF2 "AT4G23750" [Arabidopsis	0.590	0.454	0.372	1.4e-23
TAIR|locus:2154272	354	CRF3 "AT5G53290" [Arabidopsis	0.435	0.324	0.453	2.1e-22
TAIR|locus:2076720	315	CRF6 "AT3G61630" [Arabidopsis	0.583	0.488	0.390	9e-22
TAIR|locus:2183861	212	Rap2.6L "related to AP2 6l" [A	0.287	0.358	0.576	1.7e-20
TAIR|locus:2156171	248	AT5G61890 [Arabidopsis thalian	0.287	0.306	0.556	1.5e-19
TAIR|locus:2032500	166	ERF11 "ERF domain protein 11"	0.219	0.349	0.672	2.5e-19
TAIR|locus:2062954	294	CRF5 "AT2G46310" [Arabidopsis	0.541	0.486	0.405	3.1e-19
TAIR|locus:2170101	220	ERF110 "ethylene response fact	0.310	0.372	0.506	4e-19

TAIR|locus:2136078 CRF1 "AT4G11140" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 62/132 (46%), Positives = 84/132 (63%)

Query:    56 RRVKRHVKQINLNNXXXXXXXXXXXXXXSNKLQHNKKIKRHAHQPPPQSDVTHRKKFRGV 115
             RRVK++VK++ L++              S+K +  KK ++      P    T  +KFRGV
Sbjct:    43 RRVKKYVKEVVLDSVV------------SDKEKPMKKKRKKRVVTVPVVVTTATRKFRGV 90

Query:   116 RRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNPVLTGD 175
             R+RPWG+WAAEIRDP+RR R+WLGTFDT EEAA VYD AA++L+G NA  NFP P +T +
Sbjct:    91 RQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFPPPPVT-E 149

Query:   176 DVVSGQRQRTGV 187
             +V     +  GV
Sbjct:   150 NVEEASTEVKGV 161

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042991 "transcription factor import into nucleus" evidence=RCA;IDA

GO:0048366 "leaf development" evidence=RCA;IMP

GO:0048825 "cotyledon development" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0051301 "cell division" evidence=RCA

TAIR|locus:2132962 CRF4 "AT4G27950" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 65/173 (37%), Positives = 94/173 (54%)

Query:     9 IKFTEH--VVT--TDKPII----STPGPQKLVRIILXXXXXXXXXXXXEQVINHVRRVKR 60
             +K+TEH  V+   T K  +    S     +LVR+ +            E+ +   RRVKR
Sbjct:    12 VKYTEHKTVIRKYTKKSSMERKTSVRDSARLVRVSMTDRDATDSSSDEEEFLFPRRRVKR 71

Query:    61 HVKQINLNNXXXXXXXXXXXXXXSNKLQHNKKIKRHAHQPPPQSDVTHRKKFRGVRRRPW 120
              + +I +                ++  +  K+I   +    P     ++KK+RGVR+RPW
Sbjct:    72 LINEIRVEPSSSSTGDVS-----ASPTKDRKRINVDSTVQKPSVSGQNQKKYRGVRQRPW 126

Query:   121 GRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNF---PNP 170
             G+WAAEIRDP +R+R+WLGTF T EEAA VYD AA+KL+G +A+TNF   P P
Sbjct:   127 GKWAAEIRDPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNFTVQPEP 179

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042991 "transcription factor import into nucleus" evidence=IDA

GO:0048366 "leaf development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2128429 CRF2 "AT4G23750" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 63/169 (37%), Positives = 93/169 (55%)

Query:     9 IKFTEHVVTTDKPI--ISTPGPQKLVRIILXXXXXXXXXXXXEQ-----VINHVRRVKRH 61
             IKFTEH   T   +  ++     +++RI +            E+      ++  RRVK+ 
Sbjct:    12 IKFTEHKTNTTTIVSELTNTHQTRILRISVTDPDATDSSSDDEEEEHQRFVSKRRRVKKF 71

Query:    62 VKQINLNNXXXXXXXXXXXXXXSNKLQHNKKIKRHAHQPPPQS---DVTHRKKFRGVRRR 118
             V ++ L++               +K +  + +K  +   P  S     T  KKFRGVR+R
Sbjct:    72 VNEVYLDSGAVVTGSCGQM---ESKKRQKRAVKSESTVSPVVSATTTTTGEKKFRGVRQR 128

Query:   119 PWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNF 167
             PWG+WAAEIRDP +R RLWLGT++T EEAA VYD AA++L+G +A+TNF
Sbjct:   129 PWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNF 177

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042991 "transcription factor import into nucleus" evidence=RCA;IDA

GO:0048825 "cotyledon development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0048364 "root development" evidence=IEP

GO:0042802 "identical protein binding" evidence=IPI

GO:0006606 "protein import into nucleus" evidence=RCA

TAIR|locus:2154272 CRF3 "AT5G53290" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 54/119 (45%), Positives = 73/119 (61%)

Query:    56 RRVKRHVKQINLN---NXXXXXXXXXXXXXXSNKLQHNKKIKRHAHQPPPQSDVTHR-KK 111
             RRVKR V +I +    N              S+     +       +P  +  V+ + KK
Sbjct:    65 RRVKRFVNEITVEPSCNNVVTGVSMKDRKRLSSSSDETQSPASSRQRPNNKVSVSGQIKK 124

Query:   112 FRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNP 170
             FRGVR+RPWG+WAAEIRDP +R+R+WLGTF+T EEAA VYD AA++L+G +A+TNF  P
Sbjct:   125 FRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNFSIP 183

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042991 "transcription factor import into nucleus" evidence=IDA

GO:0048366 "leaf development" evidence=IMP

GO:0048825 "cotyledon development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

TAIR|locus:2076720 CRF6 "AT3G61630" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 64/164 (39%), Positives = 85/164 (51%)

Query:     9 IKFTEHVVTTDKPIISTPGPQKLVRIILXXXXXXXXXXXXEQVINH--VRRVKRHVKQIN 66
             +KFTE+   T+     + G  +LVRI +            +   N   V RVKR+VK+I 
Sbjct:     8 VKFTENRTVTNVAATPSNGSPRLVRITVTDPFATDSSSDDDDNNNVTVVPRVKRYVKEIR 67

Query:    67 LNNXXXXXXXXXXXXXXSNKLQHNKKIKRHAHQPPPQSDVTHRKKFRGVRRRPWGRWAAE 126
                              + K +H  K +         S     KK+RGVR+RPWG++AAE
Sbjct:    68 FCQGESSSSTA------ARKGKH--KEEESVVVEDDVSTSVKPKKYRGVRQRPWGKFAAE 119

Query:   127 IRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNP 170
             IRDP+ R R+WLGTF T EEAA  YD+AA+ LKG  A+TNF  P
Sbjct:   120 IRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNFLTP 163

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0042991 "transcription factor import into nucleus" evidence=RCA;IDA

GO:0048366 "leaf development" evidence=IMP

GO:0048825 "cotyledon development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2183861 Rap2.6L "related to AP2 6l" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 45/78 (57%), Positives = 54/78 (69%)

Query:    94 KRHAHQPPPQSDVTHRKKFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQ 153
             K   HQP    D   R+ +RGVR+RPWG+WAAEIRDP +  R+WLGTF+T EEAA  YD+
Sbjct:    23 KSDQHQP--DQDQPRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDR 80

Query:   154 AAVKLKGANAVTNFPNPV 171
             AA+K KG  A  NFP  V
Sbjct:    81 AALKFKGTKAKLNFPERV 98

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0071497 "cellular response to freezing" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2156171 AT5G61890 [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 44/79 (55%), Positives = 56/79 (70%)

Query:    98 HQPPPQSDVTHRKKFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVK 157
             HQ   Q D+  R+ +RGVR+RPWG+WAAEIRDP +  R+WLGTF+T E AA  YD+AA+K
Sbjct:    79 HQD--QGDL-RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALK 135

Query:   158 LKGANAVTNFPNPVLTGDD 176
              KG+ A  NFP  V  G +
Sbjct:   136 FKGSKAKLNFPERVQLGSN 154

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2032500 ERF11 "ERF domain protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 39/58 (67%), Positives = 50/58 (86%)

Query:   111 KFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFP 168
             ++RGVR+RPWGR+AAEIRDP ++ R+WLGTFDTPEEAA  YD+ A++ +GA A TNFP
Sbjct:    19 RYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2062954 CRF5 "AT2G46310" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 64/158 (40%), Positives = 81/158 (51%)

Query:    17 TTDKPIISTP--GPQKLVRIILXXXXXXXXXXXXEQVINHVR-RVKRHVKQINLNNXXXX 73
             T  + I STP  G  K+V+II+            E     V  RVKR+V +I   +    
Sbjct:    11 TVHRKITSTPFDGFPKIVKIIVTDPCATDSSSDEENDNKSVAPRVKRYVDEIRFCDEDD- 69

Query:    74 XXXXXXXXXXSNKLQHNKKIKRHAHQPPPQSDVTHRK-KFRGVRRRPWGRWAAEIRDPNR 132
                         K     K K  A       D+     K+RGVR+RPWG++AAEIRDP+ 
Sbjct:    70 ----------EPKPARKAKKKSPAAAAENGGDLVKSVVKYRGVRQRPWGKFAAEIRDPSS 119

Query:   133 RKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNP 170
             R RLWLGTF T EEAA  YD+AA+++KG NA TNF  P
Sbjct:   120 RTRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNFLTP 157

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0042991 "transcription factor import into nucleus" evidence=RCA;IDA

GO:0048366 "leaf development" evidence=IMP

GO:0048825 "cotyledon development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2170101 ERF110 "ethylene response factor 110" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 42/83 (50%), Positives = 57/83 (68%)

Query:    89 HNKKIKRHAHQPPPQSDVTHRKKFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAA 148
             HN  I+    +  P+     ++++RGVR+RPWG+WAAEIRDP+R  R+WLGTFDT E AA
Sbjct:    55 HNP-IEESMSKAFPEEAREKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAA 113

Query:   149 SVYDQAAVKLKGANAVTNFPNPV 171
               YD+AA++ +G  A  NFP  V
Sbjct:   114 RAYDEAALRFRGNKAKLNFPEDV 136

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	264
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	5e-35
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	3e-33
pfam00847	53	pfam00847, AP2, AP2 domain	1e-15

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  119 bits (301), Expect = 5e-35
 Identities = 40/59 (67%), Positives = 49/59 (83%)

Query: 111 KFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPN 169
           K+RGVR+RPWG+W AEIRDP++ KR+WLGTFDT EEAA  YD+AA K +G +A  NFPN
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  115 bits (289), Expect = 3e-33
 Identities = 40/60 (66%), Positives = 52/60 (86%)

Query: 110 KKFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPN 169
            K+RGVR+RPWG+W AEIRDP+  +R+WLGTFDT EEAA  YD+AA+KL+G++AV NFP+
Sbjct: 1   SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 68.8 bits (169), Expect = 1e-15
 Identities = 28/54 (51%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 110 KKFRGVRRRP-WGRWAAEIRDPN--RRKRLWLGTFDTPEEAASVYDQAAVKLKG 160
             ++GVR    WGRW AEIRDP   ++KR  LGTF T EEAA     A +KL+G
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	264
PHA00280	121	putative NHN endonuclease	99.85
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.84
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.84
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.13
PF13392	46	HNH_3: HNH endonuclease; PDB: 1U3E_M.	93.06
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	85.33

>PHA00280 putative NHN endonuclease

Probab=99.85  E-value=5e-22  Score=162.91  Aligned_cols=106  Identities=14%  Similarity=0.102  Sum_probs=88.1

Q ss_pred             CCCcEEEEEEeCCCCCCCCCchhhhhcccCcccccccccccCcccccccccccccccccccccccccccccCCCCCCCCC
Q 043400           27 GPQKLVRIILTDADATDSSSDDEQVINHVRRVKRHVKQINLNNHHRRQHQQQQRGQQSNKLQHNKKIKRHAHQPPPQSDV  106 (264)
Q Consensus        27 ~~~r~vri~~~DpdATDSssd~e~~idh~~~~K~~nreiNLr~~~~~~~~~~n~~~~~nn~s~~k~~k~~~~~~~~~~~~  106 (264)
                      ..-|+||..++++.+..      .+|||+++++.||++.|||.++..+ |++|+...                      .
T Consensus        13 ~~Hrlvw~~~~G~~P~g------~~VdHidg~~~dnri~NLr~~T~~e-N~~N~~~~----------------------~   63 (121)
T PHA00280         13 RRHIQVWEAANGPIPKG------YYIDHIDGNPLNDALDNLRLALPKE-NSWNMKTP----------------------K   63 (121)
T ss_pred             hHhHhhhHHHHCCCCCC------CEEEcCCCCCCCCcHHHhhhcCHHH-HhcccCCC----------------------C
Confidence            34689999999877542      2699999999999999999999987 54443222                      1


Q ss_pred             CCCcceeeEEECC-CCeEEEEEecCCCCeEeeccCCCCHHHHHHHHHHHHHHhhCCCCC
Q 043400          107 THRKKFRGVRRRP-WGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAV  164 (264)
Q Consensus       107 ~~~s~yrGVr~r~-~gkW~A~I~~~~~~k~~~LGtf~t~EeAa~Ayd~aa~~l~G~~a~  164 (264)
                      .++|+|+||++.+ .|||+|+|+  ++||+++||.|+++|+|+.||. ++.+|||+||.
T Consensus        64 ~N~SG~kGV~~~k~~~kw~A~I~--~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         64 SNTSGLKGLSWSKEREMWRGTVT--AEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             CCCCCCCeeEEecCCCeEEEEEE--ECCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            3678889998554 499999999  9999999999999999999997 78899999985

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.84  E-value=6.8e-21  Score=137.74  Aligned_cols=61  Identities=66%  Similarity=1.276  Sum_probs=57.7

Q ss_pred             cceeeEEECCCCeEEEEEecCCCCeEeeccCCCCHHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 043400          110 KKFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNP  170 (264)
Q Consensus       110 s~yrGVr~r~~gkW~A~I~~~~~~k~~~LGtf~t~EeAa~Ayd~aa~~l~G~~a~~Nfp~~  170 (264)
                      |+|+||+++++|||+|+|+++..|+++|||+|+|+|||+.|||.|+++++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999999999999999666699999999999999999999999999999999999975

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.84  E-value=9.6e-21  Score=138.54  Aligned_cols=63  Identities=63%  Similarity=1.213  Sum_probs=60.4

Q ss_pred             ceeeEEECCCCeEEEEEecCCCCeEeeccCCCCHHHHHHHHHHHHHHhhCCCCCCCCCCCCCC
Q 043400          111 KFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNPVLT  173 (264)
Q Consensus       111 ~yrGVr~r~~gkW~A~I~~~~~~k~~~LGtf~t~EeAa~Ayd~aa~~l~G~~a~~Nfp~~~~~  173 (264)
                      +|+||+++++|||+|+|++|.+|+.+|||+|+|+||||.|||.|+++++|.++.+|||.+.|.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            599999999999999999888999999999999999999999999999999999999999885

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.13  E-value=1e-10  Score=82.61  Aligned_cols=52  Identities=37%  Similarity=0.550  Sum_probs=45.0

Q ss_pred             cceeeEEECC-CCeEEEEEecCCC---CeEeeccCCCCHHHHHHHHHHHHHHhhCC
Q 043400          110 KKFRGVRRRP-WGRWAAEIRDPNR---RKRLWLGTFDTPEEAASVYDQAAVKLKGA  161 (264)
Q Consensus       110 s~yrGVr~r~-~gkW~A~I~~~~~---~k~~~LGtf~t~EeAa~Ayd~aa~~l~G~  161 (264)
                      |+|+||++.+ .++|+|+|+++..   +++++||.|++++||++||++++++++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899998766 4999999996432   49999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF13392 HNH_3: HNH endonuclease; PDB: 1U3E_M

Probab=93.06  E-value=0.022  Score=38.75  Aligned_cols=25  Identities=24%  Similarity=0.231  Sum_probs=17.4

Q ss_pred             hhhcccCcccccccccccCcccccc
Q 043400           50 QVINHVRRVKRHVKQINLNNHHRRQ   74 (264)
Q Consensus        50 ~~idh~~~~K~~nreiNLr~~~~~~   74 (264)
                      .+|+|++++|.+|+..||+.+++.+
T Consensus        19 ~~v~H~~~~~~~n~~~NL~~~t~~e   43 (46)
T PF13392_consen   19 YVVDHKDGNKTDNRPENLRWVTRSE   43 (46)
T ss_dssp             -EEEETTS-TT---GGGEEEE-HHH
T ss_pred             CEEEeCCCCCCCCCHHHceECCHHH
Confidence            3799999999999999999998765

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=85.33  E-value=3.2  Score=28.03  Aligned_cols=38  Identities=21%  Similarity=0.296  Sum_probs=30.7

Q ss_pred             eEEEEE--ecCCCC--eEeeccCCCCHHHHHHHHHHHHHHhh
Q 043400          122 RWAAEI--RDPNRR--KRLWLGTFDTPEEAASVYDQAAVKLK  159 (264)
Q Consensus       122 kW~A~I--~~~~~~--k~~~LGtf~t~EeAa~Ayd~aa~~l~  159 (264)
                      +|...|  .+|.+|  ++++-+-|.|..||..+...+...+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            588888  477676  56788999999999999988777664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	264
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		1e-16
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		4e-16

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/67 (55%), Positives = 53/67 (79%), Gaps = 1/67 (1%)
Query: 110 KKFRGVRRRPWGRWAAEIRDPNRR-KRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFP 168
           K +RGVR+RPWG++AAEIRDP +   R+WLGTF+T E+AA  YD+AA +++G+ A+ NFP
Sbjct: 4   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63
Query: 169 NPVLTGD 175
             V +G+
Sbjct: 64  LRVNSGE 70

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 49/60 (81%), Gaps = 1/60 (1%)
Query: 110 KKFRGVRRRPWGRWAAEIRDPNRR-KRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFP 168
           K +RGVR+RPWG++AAEIRDP +   R+WLGTF+T E+AA  YD+AA +++G+ A+ NFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	264
1gcc_A	63	Ethylene responsive element binding factor 1; tran	6e-37

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  123 bits (312), Expect = 6e-37
 Identities = 36/63 (57%), Positives = 50/63 (79%), Gaps = 1/63 (1%)

Query: 110 KKFRGVRRRPWGRWAAEIRDPNRR-KRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFP 168
           K +RGVR+RPWG++AAEIRDP +   R+WLGTF+T E+AA  YD+AA +++G+ A+ NFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 169 NPV 171
             V
Sbjct: 61  LRV 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	264
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.9
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	98.32
1z1b_A	356	Integrase; protein-DNA complex, DNA binding protei	81.17

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.90  E-value=1.3e-24  Score=158.39  Aligned_cols=60  Identities=57%  Similarity=1.134  Sum_probs=57.5

Q ss_pred             ceeeEEECCCCeEEEEEecCCC-CeEeeccCCCCHHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 043400          111 KFRGVRRRPWGRWAAEIRDPNR-RKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNP  170 (264)
Q Consensus       111 ~yrGVr~r~~gkW~A~I~~~~~-~k~~~LGtf~t~EeAa~Ayd~aa~~l~G~~a~~Nfp~~  170 (264)
                      +||||++++||||+|+|++|.. |+++|||+|+|+||||+|||.|+++|+|..+.+|||.+
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999999999999999998874 89999999999999999999999999999999999986

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=98.32  E-value=1.5e-08  Score=85.79  Aligned_cols=76  Identities=9%  Similarity=-0.044  Sum_probs=54.1

Q ss_pred             hhhcccCcccccccccccCcccccccccccccccccccccccccccccCCCCCCCCCCCCcceeeEEECCCCeEEEEEec
Q 043400           50 QVINHVRRVKRHVKQINLNNHHRRQHQQQQRGQQSNKLQHNKKIKRHAHQPPPQSDVTHRKKFRGVRRRPWGRWAAEIRD  129 (264)
Q Consensus        50 ~~idh~~~~K~~nreiNLr~~~~~~~~~~n~~~~~nn~s~~k~~k~~~~~~~~~~~~~~~s~yrGVr~r~~gkW~A~I~~  129 (264)
                      .+|+|++++|.||+..||+.++..+ |+++.....++.                       .++||...+.++|.|.|. 
T Consensus        71 ~~v~H~dg~k~nn~~~NL~~~t~~e-N~~~~~~~~~~~-----------------------~~~g~~~~~~~k~~~vi~-  125 (174)
T 1u3e_M           71 LVVDHKDGNKDNNLSTNLRWVTQKI-NVENQMSRGTLN-----------------------VSKAQQIAKIKNQKPIIV-  125 (174)
T ss_dssp             CEEEETTSCTTCCCGGGEEEECHHH-HHHHHHHHTCCC-----------------------CHHHHHHHHHHTCCCEEE-
T ss_pred             CEEEcCCCCCCCCCHHHcEECCHHH-HhhcccccCccc-----------------------ceeeeeeccCCCCceEEE-
Confidence            4799999999999999999999987 555443322110                       012222111156888888 


Q ss_pred             CCCCeEeeccCCCCHHHHHHHHH
Q 043400          130 PNRRKRLWLGTFDTPEEAASVYD  152 (264)
Q Consensus       130 ~~~~k~~~LGtf~t~EeAa~Ayd  152 (264)
                       .+ +.++||.|.|.+|||++|.
T Consensus       126 -~~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          126 -IS-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             -EC-TTSCEEEESCHHHHHHHHT
T ss_pred             -Ec-CCceEEeeCCHHHHHHHHC
Confidence             66 6678999999999999964

>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*

Probab=81.17  E-value=1.5  Score=38.54  Aligned_cols=42  Identities=21%  Similarity=0.132  Sum_probs=32.8

Q ss_pred             eeEEECCCCeEEEEEecCCCCeEeeccCCCCHHHHHHHHHHHHHHh
Q 043400          113 RGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKL  158 (264)
Q Consensus       113 rGVr~r~~gkW~A~I~~~~~~k~~~LGtf~t~EeAa~Ayd~aa~~l  158 (264)
                      .||++++.|.|+.+..  .+|+++.+|.  |..||..+...+...+
T Consensus        14 ~~v~~~~~g~~~~r~~--~~gk~~~~g~--t~~eA~~~a~~~~~~~   55 (356)
T 1z1b_A           14 PNLYIRNNGYYCYRDP--RTGKEFGLGR--DRRIAITEAIQANIEL   55 (356)
T ss_dssp             TTEEEETTTEEEEECT--TTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred             ccceecCCCeEEEEee--cCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence            3688888899998765  7899999996  8888887776655544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	264
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	6e-32

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  110 bits (276), Expect = 6e-32
 Identities = 35/60 (58%), Positives = 49/60 (81%), Gaps = 1/60 (1%)

Query: 110 KKFRGVRRRPWGRWAAEIRDPNR-RKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFP 168
           K +RGVR+RPWG++AAEIRDP +   R+WLGTF+T E+AA  YD+AA +++G+ A+ NFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	264
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.9
d1u3em1	105	Intron-encoded homing endonuclease I-HmuI {Bacteri	93.0

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=7.7e-25  Score=157.95  Aligned_cols=60  Identities=57%  Similarity=1.120  Sum_probs=56.7

Q ss_pred             ceeeEEECCCCeEEEEEecCC-CCeEeeccCCCCHHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 043400          111 KFRGVRRRPWGRWAAEIRDPN-RRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNP  170 (264)
Q Consensus       111 ~yrGVr~r~~gkW~A~I~~~~-~~k~~~LGtf~t~EeAa~Ayd~aa~~l~G~~a~~Nfp~~  170 (264)
                      +||||+++++|||+|+|++|. +++++|||+|+|+||||+|||+|+++|+|+++.+|||+.
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            599999999999999999874 568999999999999999999999999999999999986

>d1u3em1 d.4.1.3 (M:1-105) Intron-encoded homing endonuclease I-HmuI {Bacteriophage SP01 [TaxId: 10685]}

class: Alpha and beta proteins (a+b)
fold: His-Me finger endonucleases
superfamily: His-Me finger endonucleases
family: Intron-encoded homing endonucleases
domain: Intron-encoded homing endonuclease I-HmuI
species: Bacteriophage SP01 [TaxId: 10685]

Probab=93.00  E-value=0.0071  Score=45.19  Aligned_cols=25  Identities=20%  Similarity=0.159  Sum_probs=23.0

Q ss_pred             hhhcccCcccccccccccCcccccc
Q 043400           50 QVINHVRRVKRHVKQINLNNHHRRQ   74 (264)
Q Consensus        50 ~~idh~~~~K~~nreiNLr~~~~~~   74 (264)
                      .+|||++++|.+|+..||+.++..+
T Consensus        71 ~~VdHidgnk~nN~~~NL~w~T~~e   95 (105)
T d1u3em1          71 LVVDHKDGNKDNNLSTNLRWVTQKI   95 (105)
T ss_dssp             CEEEETTSCTTCCCGGGEEEECHHH
T ss_pred             CEEEeCCCCCCCCCHHHcEEcCHHH
Confidence            4699999999999999999999876