BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043402
(135 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EGJ|H Chain H, Domain 4 Of The Beta Common Chain In Complex With An
Antibody
Length = 220
Score = 29.3 bits (64), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 16 PYAIGALYNHPLEG---LLLDTLGGALSFLVSRMTTRTAVIFFC 56
P G LYN +G L +D S +SR+T+ + +++C
Sbjct: 53 PSNGGTLYNQKFKGKATLTVDKSSSTASMQLSRLTSEDSAVYYC 96
>pdb|2GRV|A Chain A, Crystal Structure Of Lpqw
pdb|2GRV|B Chain B, Crystal Structure Of Lpqw
pdb|2GRV|C Chain C, Crystal Structure Of Lpqw
Length = 621
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 100 YSQPFFSIWDRLLGTHMPYHLVKLPEGGFEARLKK 134
+SQP+ W L +P H+VK GGF A L +
Sbjct: 178 FSQPY-PAWRELFNDILPAHIVKDIPGGFGAGLAR 211
>pdb|2BK9|A Chain A, Drosophila Melanogaster Globin
Length = 153
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 15 VPYAIGALYNHPLEGLLLDTLGGALSFLVSRMTTRTAVIFFCFAVI-KIVDDH 66
+P + + L+G++LD L A S S+ T ++ +A+I K +DD
Sbjct: 97 IPRTVSKESYNQLKGVILDVLTAASSLDESQAATWAKLVDHVYAIIFKAIDDD 149
>pdb|3DMS|A Chain A, 1.65a Crystal Structure Of Isocitrate Dehydrogenase From
Burkholderia Pseudomallei
Length = 427
Score = 27.3 bits (59), Expect = 2.7, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 116 MPYHLVKLPEGGFEARLKKD 135
MPY +K+PEGG + + KD
Sbjct: 9 MPYQHIKVPEGGDKITVNKD 28
>pdb|1PYS|A Chain A, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
pdb|1B7Y|A Chain A, Phenylalanyl Trna Synthetase Complexed With
Phenylalaninyl-Adenylate
pdb|1EIY|A Chain A, The Crystal Structure Of Phenylalanyl-Trna Synthetase From
Thermus Thermophilus Complexed With Cognate Trnaphe
pdb|1B70|A Chain A, Phenylalanyl Trna Synthetase Complexed With Phenylalanine
pdb|1JJC|A Chain A, Crystal Structure At 2.6a Resolution Of Phenylalanyl-trna
Synthetase Complexed With Phenylalanyl-adenylate In The
Presence Of Manganese
pdb|2IY5|A Chain A, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
Complexed With Trna And A Phenylalanyl-Adenylate Analog
pdb|3HFZ|A Chain A, Crystal Structure Of Thermus Thermophilus
Phenylalanyl-Trna Synthetase Comlexed With M-Tyrosine
pdb|3TEH|A Chain A, Crystal Structure Of Thermus Thermophilus
Phenylalanyl-Trna Synthetase Comlexed With L-Dopa
Length = 350
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 71 LPGNIFHLFFQNNITYHDVHHQLQGL 96
+PG +F F Q + T+ V HQL+GL
Sbjct: 198 VPGRVFR-FEQTDATHEAVFHQLEGL 222
>pdb|4GDN|A Chain A, Structure Of Fmta-Like Protein
pdb|4GDN|B Chain B, Structure Of Fmta-Like Protein
pdb|4GDN|C Chain C, Structure Of Fmta-Like Protein
pdb|4GDN|D Chain D, Structure Of Fmta-Like Protein
Length = 342
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 70 WL-PGNIFHLFFQ--NNITYHD-VHHQLQGLKYNYSQPFFSIWD 109
WL P ++ H F+ NN + HD + ++LQG S+P F++WD
Sbjct: 190 WLKPLHMTHTSFKQTNNKSKHDAIGYELQGSTPVVSKPEFNLWD 233
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 64 DDHSGLWLPGNIFHLFFQNNITYHDVHHQL 93
D H+G G I F++ NITY ++H L
Sbjct: 210 DVHAGYLTIGGIEEKFYEGNITYEKLNHDL 239
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 64 DDHSGLWLPGNIFHLFFQNNITYHDVHHQL 93
D H+G G I F++ NITY ++H L
Sbjct: 164 DVHAGYLTIGGIEEKFYEGNITYEKLNHDL 193
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 26.6 bits (57), Expect = 4.4, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Query: 30 LLLDTLGGALSFLVSRMTTRTAVIFFCFA----------VIKIVDDHSGLWLPGNI 75
LL + G + +++++T+R A ++C IKI++ L +PGN+
Sbjct: 397 LLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNV 452
>pdb|2AKW|A Chain A, Crystal Structure Of T.thermophilus Phenylalanyl-trna
Synthetase Complexed With P-cl-phenylalanine
pdb|2ALY|A Chain A, Crystal Structure Of T.Thermophilus Phenylalanyl-Trna
Synthetase Complexed With
5'-O-[n-(L-Tyrosyl)sulphamoyl]adenosine
pdb|2AMC|A Chain A, Crystal Structure Of Phenylalanyl-Trna Synthetase
Complexed With L- Tyrosine
Length = 266
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 71 LPGNIFHLFFQNNITYHDVHHQLQGL 96
+PG +F F Q + T+ V HQL+GL
Sbjct: 114 VPGRVFR-FEQTDATHEAVFHQLEGL 138
>pdb|1YJD|H Chain H, Crystal Structure Of Human Cd28 In Complex With The Fab
Fragment Of A Mitogenic Antibody (5.11a1)
Length = 222
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 13 LVVPYAIGALYNHPLEG---LLLDTLGGALSFLVSRMTTRTAVIFFC 56
+ P + YN + L++DT +SRMT+ + ++FC
Sbjct: 50 CIYPGNVNTNYNEKFKDKATLIVDTSSNTAYMQLSRMTSEDSAVYFC 96
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 64 DDHSGLWLPGNIFHLFFQNNITYHDVHHQL 93
D HSG G I F++ +TY ++H L
Sbjct: 162 DKHSGYLTIGGIEEKFYEGELTYEKLNHDL 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.146 0.478
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,540,962
Number of Sequences: 62578
Number of extensions: 170735
Number of successful extensions: 364
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 22
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 46 (22.3 bits)