Query 043402
Match_columns 135
No_of_seqs 129 out of 1095
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 04:41:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043402.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043402hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3000 ERG3 Sterol desaturase 100.0 9.8E-30 2.1E-34 197.4 10.5 130 2-134 122-253 (271)
2 KOG0874 Sphingolipid hydroxyla 99.9 2.5E-29 5.4E-34 187.1 -1.7 134 1-134 149-282 (287)
3 KOG0873 C-4 sterol methyl oxid 99.9 2.4E-27 5.2E-32 182.3 4.1 120 1-124 146-266 (283)
4 PLN02869 fatty aldehyde decarb 99.9 5.2E-24 1.1E-28 177.8 7.2 115 1-121 153-279 (620)
5 KOG0872 Sterol C5 desaturase [ 99.9 5.3E-24 1.1E-28 162.6 3.3 116 1-124 154-269 (312)
6 PF04116 FA_hydroxylase: Fatty 99.6 5.8E-16 1.3E-20 104.6 5.9 90 1-92 24-114 (114)
7 PLN02434 fatty acid hydroxylas 98.3 2.5E-06 5.3E-11 65.3 7.1 37 84-122 198-234 (237)
8 PRK07424 bifunctional sterol d 97.6 9.2E-05 2E-09 60.9 4.5 110 5-119 38-177 (406)
9 KOG0539 Sphingolipid fatty aci 95.7 0.023 5.1E-07 42.9 4.8 34 84-119 201-234 (240)
10 PF10520 Kua-UEV1_localn: Kua- 95.6 0.0033 7.2E-08 46.3 0.0 62 57-120 97-161 (178)
11 PLN02601 beta-carotene hydroxy 88.9 0.41 8.9E-06 37.6 2.8 40 63-102 225-269 (303)
12 KOG3011 Ubiquitin-conjugating 72.8 3.7 8.1E-05 32.0 2.8 62 51-114 198-262 (293)
13 cd03510 Rhizobitoxine-FADS-lik 62.8 13 0.00029 26.8 3.9 76 2-94 72-161 (175)
14 PF12431 CitT: Transcriptional 42.3 35 0.00075 17.5 2.4 24 106-129 4-28 (30)
15 KOG1600 Fatty acid desaturase 37.0 15 0.00032 29.6 0.6 36 84-120 122-162 (321)
16 cd03505 Delta9-FADS-like The D 33.0 74 0.0016 23.4 3.7 14 3-16 57-70 (178)
17 PF02208 Sorb: Sorbin homologo 29.1 22 0.00048 20.3 0.3 11 2-12 32-42 (47)
18 COG5336 Uncharacterized protei 24.6 2.4E+02 0.0051 19.3 5.1 27 43-69 69-98 (116)
No 1
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=99.96 E-value=9.8e-30 Score=197.44 Aligned_cols=130 Identities=32% Similarity=0.434 Sum_probs=112.9
Q ss_pred hhchhhhhcCCCCCCCcccccccCHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHhhCCcccCCCccccc--
Q 043402 2 LYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSRMTTRTAVIFFCFAVIKIVDDHSGLWLPGNIFHLF-- 79 (135)
Q Consensus 2 ly~~~H~~HH~~~~~~~~~~~~~hp~E~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Hsg~~~~~~~~~~~-- 79 (135)
+|+++|++||+.+.|+++++.+.||+|.++...+ ..++..++|.++.++.++..+..+..+++|||++.| .+.+++
T Consensus 122 ~~w~~H~~HH~~~~~~~~t~~~~hp~e~ll~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~H~~~~~~-~~~~~~~~ 199 (271)
T COG3000 122 LLWAFHKVHHSSEVPDPLTALRFHPLEILLLAFL-GLLPLLLLGLSPVAVALLFIFLLFWAVLIHSNLDLP-LPLGWLRY 199 (271)
T ss_pred HHHHHHHhhcCcccCCchhhhhcChHHHHHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCcccc-CCccccee
Confidence 5789999999999999999999999999999774 667778889999999999999999999999999976 433332
Q ss_pred cccCcccccccccCCCCCccCCCCchhHHHhHhCCCCCCccccCCCCCCccccCC
Q 043402 80 FQNNITYHDVHHQLQGLKYNYSQPFFSIWDRLLGTHMPYHLVKLPEGGFEARLKK 134 (135)
Q Consensus 80 ~~~~p~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~~~~~~~~g~~~~~~~ 134 (135)
++++|++|++||++++.++|||. .+++|||+|||+..++++...+.|.+.+.++
T Consensus 200 v~~~p~~H~lHH~~~~~~~Nyg~-~~~~WDrlFGT~~~~~~~~~~~~~~~~~~~~ 253 (271)
T COG3000 200 VFNTPRHHRLHHSKDPYDKNYGV-TLTFWDRLFGTYHPPDEREPDKIGVKAKIAL 253 (271)
T ss_pred eecCchHHHHhccCCCCCCcchh-hhHHHHHHcccCCCCcccCcccccccccccc
Confidence 46799999999999844699996 8999999999999998888888777755544
No 2
>KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism]
Probab=99.94 E-value=2.5e-29 Score=187.06 Aligned_cols=134 Identities=68% Similarity=1.227 Sum_probs=126.9
Q ss_pred ChhchhhhhcCCCCCCCcccccccCHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHhhCCcccCCCcccccc
Q 043402 1 FLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSRMTTRTAVIFFCFAVIKIVDDHSGLWLPGNIFHLFF 80 (135)
Q Consensus 1 ~ly~~~H~~HH~~~~~~~~~~~~~hp~E~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Hsg~~~~~~~~~~~~ 80 (135)
+|||.+|+.||+-..|.+..+.+.||+|.+++..++..+..++.|+++.+.++++.+.++-++..|||+.+|..++.+.|
T Consensus 149 ~LYk~iHs~HHrL~VPYayGALyNhP~EGllLDT~G~gla~l~sglspr~aiifFtfaTiKTVDDHCGy~lP~dpfqm~F 228 (287)
T KOG0874|consen 149 FLYKHIHSQHHRLIVPYAYGALYNHPVEGLLLDTIGGGLAFLLSGLSPRTAIIFFTFATIKTVDDHCGYWLPGDPFQMFF 228 (287)
T ss_pred HHHHHHHhhceeEecchhhhhhhcCcchhhhhhhhchHHHHHHcCCCccceEEEEEeeeeeeeccccccccCCCceeEec
Confidence 48999999999999999999999999999999999888988899999999999999999999999999999999988878
Q ss_pred ccCcccccccccCCCCCccCCCCchhHHHhHhCCCCCCccccCCCCCCccccCC
Q 043402 81 QNNITYHDVHHQLQGLKYNYSQPFFSIWDRLLGTHMPYHLVKLPEGGFEARLKK 134 (135)
Q Consensus 81 ~~~p~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~~~~~~~~g~~~~~~~ 134 (135)
-+.+++||+||+....+.||++|+|++||+++||+.++..+++.|.|.+.|+-|
T Consensus 229 ~NNa~YHDiHHQ~yG~k~NFsQPFFtfWD~ilgTYmp~~~E~~~ekk~k~kn~K 282 (287)
T KOG0874|consen 229 PNNAAYHDIHHQLYGTKYNFSQPFFTFWDRILGTYMPYSLEKRLEKKFKAKNFK 282 (287)
T ss_pred cCCchhhhhhhhhhccccccCCcHHHHHHHHHhhcCCchhccccccccccccch
Confidence 889999999999877789999999999999999999999999999999998866
No 3
>KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism]
Probab=99.93 E-value=2.4e-27 Score=182.35 Aligned_cols=120 Identities=30% Similarity=0.453 Sum_probs=106.5
Q ss_pred ChhchhhhhcCCCCCCCcccccccCHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHhhCCcccCCCcccc-c
Q 043402 1 FLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSRMTTRTAVIFFCFAVIKIVDDHSGLWLPGNIFHL-F 79 (135)
Q Consensus 1 ~ly~~~H~~HH~~~~~~~~~~~~~hp~E~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Hsg~~~~~~~~~~-~ 79 (135)
|+||.+||+||++++|.+.++.|.||+|.++.++.+...+ ++++.|+.+.++|++++++.++..||||++||...+. +
T Consensus 146 ~~Yk~iHKvHHe~taPf~~sa~YaHp~E~~~lg~~~~~~p-~~~~~H~~t~wiw~~l~i~~t~~~HsGY~fPwsl~~~~p 224 (283)
T KOG0873|consen 146 WLYKYIHKVHHEYTAPFGLSAEYAHPLEHLFLGLGTVMGP-ALLCGHVITLWIWIALRILETVESHSGYDFPWSLSKLIP 224 (283)
T ss_pred HHHHHHHhhhhcccCchhHhhhhcCHHHHHHcCChhhhhh-HHhhhHHHHHHHHHHHHHHHHhhccCCCCCCccccccCc
Confidence 6899999999999999999999999999999998655455 4555699999999999999999999999999998765 5
Q ss_pred cccCcccccccccCCCCCccCCCCchhHHHhHhCCCCCCccccCC
Q 043402 80 FQNNITYHDVHHQLQGLKYNYSQPFFSIWDRLLGTHMPYHLVKLP 124 (135)
Q Consensus 80 ~~~~p~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~~~~~~ 124 (135)
+.++++.||.||..+ .+||+. .|+.|||++||...+++.+..
T Consensus 225 fy~ga~~HD~HH~~f--~~n~~~-~f~~~D~i~GTd~~~~~~k~~ 266 (283)
T KOG0873|consen 225 FYGGAEHHDYHHLVF--IGNFAS-VFGYLDRIHGTDSTYRALKEL 266 (283)
T ss_pred ccCCCcccchhhhhc--cccccc-hhHHHHHHhccCccHhhhhhH
Confidence 778999999999998 679996 899999999999987765443
No 4
>PLN02869 fatty aldehyde decarbonylase
Probab=99.90 E-value=5.2e-24 Score=177.81 Aligned_cols=115 Identities=23% Similarity=0.351 Sum_probs=88.9
Q ss_pred ChhchhhhhcCCCCCCCcccccccCHHHH-HHHHHHHHHHHHh----hcCccHHHHHHHHHHHHHHHHHhhCCcc-cCCC
Q 043402 1 FLYRHIHSQHHRLVVPYAIGALYNHPLEG-LLLDTLGGALSFL----VSRMTTRTAVIFFCFAVIKIVDDHSGLW-LPGN 74 (135)
Q Consensus 1 ~ly~~~H~~HH~~~~~~~~~~~~~hp~E~-~l~~~~~~~l~~~----l~~~~~~~~~~~~~~~~~~~~~~Hsg~~-~~~~ 74 (135)
++|+++|++||++.+|+++++. .||+|. ++... ...+|++ ....+..++++++++..+.++++|||++ +|+.
T Consensus 153 ~LYwr~HkvHHss~~~~P~Ts~-~HP~~E~L~y~l-l~~IPLllli~~g~~hi~t~~~yli~~~f~~~~gHSN~El~P~~ 230 (620)
T PLN02869 153 YLYSRYHSHHHSSIVTEPITSV-IHPFAEHIAYFL-LFAIPLLTTIFTGTASIAAFFGYISYIDFMNNMGHCNFELIPKW 230 (620)
T ss_pred HHHHHHHhhccCCCCCCchhhh-cCcHHHHHHHHH-HHHHHHHHHhhcccchHHHHHHHHHHHHHHhcccccCccccccc
Confidence 5899999999999999999886 799754 33322 2223332 2235778888888888999999999998 4654
Q ss_pred c------cccccccCcccccccccCCCCCccCCCCchhHHHhHhCCCCCCccc
Q 043402 75 I------FHLFFQNNITYHDVHHQLQGLKYNYSQPFFSIWDRLLGTHMPYHLV 121 (135)
Q Consensus 75 ~------~~~~~~~~p~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~~~ 121 (135)
+ +++ ++++|++|++||++. ++|||. +|++|||||||+.++.++
T Consensus 231 ~~~~~ppLky-ll~TPsfHdlHHs~f--d~NYGl-fF~~WDrLFGT~d~~s~~ 279 (620)
T PLN02869 231 LFSIFPPLKY-LMYTPSYHSLHHTQF--RTNYSL-FMPIYDYIYGTMDKSSDT 279 (620)
T ss_pred hhccCCcchh-eecCchHHhHHhccC--CcCccc-chHHHHhccCCCCCCchh
Confidence 3 232 467999999999987 789996 999999999999876654
No 5
>KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism]
Probab=99.89 E-value=5.3e-24 Score=162.63 Aligned_cols=116 Identities=25% Similarity=0.418 Sum_probs=104.2
Q ss_pred ChhchhhhhcCCCCCCCcccccccCHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHhhCCcccCCCcccccc
Q 043402 1 FLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSRMTTRTAVIFFCFAVIKIVDDHSGLWLPGNIFHLFF 80 (135)
Q Consensus 1 ~ly~~~H~~HH~~~~~~~~~~~~~hp~E~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Hsg~~~~~~~~~~~~ 80 (135)
.+||+.||.||++.-.+|+++.++||+|.++++ +|..|.++++|+|..+++....+..+|++.+|.|.-...+ +.
T Consensus 154 ~vy~~LH~~HH~~~~~tpfAslafhpidg~lqa-ip~~I~~Fi~Plh~~t~L~l~~f~~iwt~~IHd~~~~~l~----~~ 228 (312)
T KOG0872|consen 154 GVYKRLHKPHHIWNICTPFASLAFHPIDGFLQA-IPYHIYPFIFPLHKVTYLSLFTFVNIWTISIHDGIYGSLN----PP 228 (312)
T ss_pred HHHhhhcchhhhhhccCchhhhhcCcchhHhhh-chhHheeeeecchHHHHHHHHHHHHhHheeeecccccccc----Cc
Confidence 379999999999999999999999999999997 4899999999999999999999999999999999854423 25
Q ss_pred ccCcccccccccCCCCCccCCCCchhHHHhHhCCCCCCccccCC
Q 043402 81 QNNITYHDVHHQLQGLKYNYSQPFFSIWDRLLGTHMPYHLVKLP 124 (135)
Q Consensus 81 ~~~p~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~~~~~~ 124 (135)
+++|.+|+.||.+. +.|||+ ++.+|||+|||++.|..+..+
T Consensus 229 ingaahHtvHH~~f--~~NYG~-~tilwDrmfgSfr~p~~~~~d 269 (312)
T KOG0872|consen 229 INGAAHHTVHHTYF--DYNYGQ-YTILWDRMFGSFRAPDHEDFD 269 (312)
T ss_pred cccccccceeeeeE--ecCCCc-EEEeHHhccCcccCccccccc
Confidence 78999999999987 789998 999999999999998876444
No 6
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=99.63 E-value=5.8e-16 Score=104.55 Aligned_cols=90 Identities=28% Similarity=0.354 Sum_probs=76.0
Q ss_pred ChhchhhhhcCCCCCCCcccccccCHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHhhCCcccCCCc-cccc
Q 043402 1 FLYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSRMTTRTAVIFFCFAVIKIVDDHSGLWLPGNI-FHLF 79 (135)
Q Consensus 1 ~ly~~~H~~HH~~~~~~~~~~~~~hp~E~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Hsg~~~~~~~-~~~~ 79 (135)
++| ++|+.||+.++|+++++.+.+|+|.++..+++.+++.++.+.++.++.++.++..+.+.++|||+..+... .+ .
T Consensus 24 ~l~-~~H~~HH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~-~ 101 (114)
T PF04116_consen 24 FLW-RIHKVHHSPKNPTPLSAFRFHPLEALLLALLPLLLPLLLLPFHALAFLLGIALFYLWYIFIHSGYHHRFPPRLR-Y 101 (114)
T ss_pred hHH-HHHHHHhCCcccCchHHHHcChHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhcCccCCCCCcch-h
Confidence 467 89999999999999999999999999998876656667788999999999999999999999999322222 22 2
Q ss_pred cccCccccccccc
Q 043402 80 FQNNITYHDVHHQ 92 (135)
Q Consensus 80 ~~~~p~~H~~HH~ 92 (135)
+..+|++|++||+
T Consensus 102 ~~~~~~~H~~HH~ 114 (114)
T PF04116_consen 102 LFVTPRHHDLHHS 114 (114)
T ss_pred HhcCHHHHHhhCc
Confidence 5679999999995
No 7
>PLN02434 fatty acid hydroxylase
Probab=98.30 E-value=2.5e-06 Score=65.35 Aligned_cols=37 Identities=32% Similarity=0.503 Sum_probs=30.4
Q ss_pred cccccccccCCCCCccCCCCchhHHHhHhCCCCCCcccc
Q 043402 84 ITYHDVHHQLQGLKYNYSQPFFSIWDRLLGTHMPYHLVK 122 (135)
Q Consensus 84 p~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~~~~ 122 (135)
=+.|..||-+++ +.|||- -..+||++|||..++++.+
T Consensus 198 kr~H~~HHfk~~-~~~fGV-Ts~~wD~vFGT~~~~~~~~ 234 (237)
T PLN02434 198 KKYHLNHHFRDQ-DKGFGI-TSSLWDRVFGTLPPSKAAK 234 (237)
T ss_pred HHHHHHHcCCCC-CCCCCc-CchHHHHhcCCCCCcchhh
Confidence 489999998764 689998 6899999999997655543
No 8
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=97.57 E-value=9.2e-05 Score=60.87 Aligned_cols=110 Identities=23% Similarity=0.290 Sum_probs=63.8
Q ss_pred hhhhhcCCCCCCCc---------ccccccCHHHHHHHHHHHHHHHHhhcCc----------cHHHHHHHH---HHHHHHH
Q 043402 5 HIHSQHHRLVVPYA---------IGALYNHPLEGLLLDTLGGALSFLVSRM----------TTRTAVIFF---CFAVIKI 62 (135)
Q Consensus 5 ~~H~~HH~~~~~~~---------~~~~~~hp~E~~l~~~~~~~l~~~l~~~----------~~~~~~~~~---~~~~~~~ 62 (135)
|+|.+||..-.++- -+..+..|.|+++...+..++..++... +....+.|. ++++..
T Consensus 38 ~~h~~hh~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~- 116 (406)
T PRK07424 38 RLHNWHHRVFRPDLSVVSEEIYRKAHWYNDVPEALVMLLFGTLPVLLLQQWNVPYGWLAWLGVLYTLTFLFGAIARGLG- 116 (406)
T ss_pred HHHHhHHhhcCCcCCcccHHHHhhhhhhcCCHHHHHHHHHhhHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHhcc-
Confidence 59999999876643 3478899999777765544443332211 111111222 222221
Q ss_pred HHhh-CCccc---C--CC--ccccccccCcccccccccCCCCCccCCCCchhHHHhHhCCCCCCc
Q 043402 63 VDDH-SGLWL---P--GN--IFHLFFQNNITYHDVHHQLQGLKYNYSQPFFSIWDRLLGTHMPYH 119 (135)
Q Consensus 63 ~~~H-sg~~~---~--~~--~~~~~~~~~p~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~ 119 (135)
+... ++-|. | .. +-. ++..+.+|..||-.+. +.-|+. .+++.|+..||....+
T Consensus 117 ~~~~~~~~d~~h~~~~~~~~~~~--~~v~~~~h~rh~~~~~-~~~~~~-~~~~~d~~~~ta~sl~ 177 (406)
T PRK07424 117 LPNADELTDLTHLPGPFETLPSQ--WFVNRPYHWRHHFDNQ-NAYYCG-TFTLVDKLMGTALSLK 177 (406)
T ss_pred cccccccccccCCCCcccCCCcc--CeecCceeEEEEeccc-cceeee-eEEEeehhcCcccCCC
Confidence 2222 22232 2 11 112 3458899999996653 467886 8999999999987543
No 9
>KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism]
Probab=95.69 E-value=0.023 Score=42.88 Aligned_cols=34 Identities=29% Similarity=0.495 Sum_probs=28.1
Q ss_pred cccccccccCCCCCccCCCCchhHHHhHhCCCCCCc
Q 043402 84 ITYHDVHHQLQGLKYNYSQPFFSIWDRLLGTHMPYH 119 (135)
Q Consensus 84 p~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~ 119 (135)
-++|-.||-+.. +..||- -.++||++|||.-..+
T Consensus 201 K~yHl~HHfk~q-~~GfGI-tS~lWD~VFgTl~~~~ 234 (240)
T KOG0539|consen 201 KKYHLNHHFKHQ-DLGFGI-TSSLWDYVFGTLGPLK 234 (240)
T ss_pred HHHHhhhhhhcc-ccCccc-cHHHHHHHhccCCCCc
Confidence 578888886643 789997 5899999999998776
No 10
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=95.58 E-value=0.0033 Score=46.30 Aligned_cols=62 Identities=16% Similarity=0.001 Sum_probs=41.1
Q ss_pred HHHHHHHHhhCCcccCCC--cccc-ccccCcccccccccCCCCCccCCCCchhHHHhHhCCCCCCcc
Q 043402 57 FAVIKIVDDHSGLWLPGN--IFHL-FFQNNITYHDVHHQLQGLKYNYSQPFFSIWDRLLGTHMPYHL 120 (135)
Q Consensus 57 ~~~~~~~~~Hsg~~~~~~--~~~~-~~~~~p~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~~ 120 (135)
++.-.--+.|.....|.. .++. =++.+++.|..||... .+.||+- +.++|+.+.....-.+.
T Consensus 97 ~tnq~HkWsH~~~~~P~~V~~LQ~~gillsr~~H~~HH~aP-h~~~YCI-~tGw~N~~Ld~~~f~~~ 161 (178)
T PF10520_consen 97 FTNQFHKWSHTYKSLPPWVRFLQDAGILLSRKHHRIHHVAP-HDTNYCI-TTGWLNPPLDKIRFWRR 161 (178)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHCCcccCchhhhccccCc-ccCCeEe-ecccchHHHHHhhHHHH
Confidence 333444567775544422 1111 1566999999999875 3789997 89999999877665444
No 11
>PLN02601 beta-carotene hydroxylase
Probab=88.88 E-value=0.41 Score=37.57 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=25.2
Q ss_pred HHhhCCc---ccCCCcc-ccc-cccCcccccccccCCCCCccCCC
Q 043402 63 VDDHSGL---WLPGNIF-HLF-FQNNITYHDVHHQLQGLKYNYSQ 102 (135)
Q Consensus 63 ~~~Hsg~---~~~~~~~-~~~-~~~~p~~H~~HH~~~~~~~Nyg~ 102 (135)
.+.|.++ ++|+.+. +.+ +-.-.+.|++||+...+..+||.
T Consensus 225 ffVHDgLVHqRfp~~~~a~~~Y~rrl~~AHklHHa~Ke~Gv~FGf 269 (303)
T PLN02601 225 MFVHDGLVHKRFPVGPIANVPYLRKVAAAHQLHHTDKFKGVPYGL 269 (303)
T ss_pred HHHhhhhhccccccCCCCCCHHHHHHHHHHHhhccCCcCCccceE
Confidence 5688888 6776642 111 21236899999984334678985
No 12
>KOG3011 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=72.85 E-value=3.7 Score=31.99 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHhhCCcccCCC--ccc-cccccCcccccccccCCCCCccCCCCchhHHHhHhCC
Q 043402 51 AVIFFCFAVIKIVDDHSGLWLPGN--IFH-LFFQNNITYHDVHHQLQGLKYNYSQPFFSIWDRLLGT 114 (135)
Q Consensus 51 ~~~~~~~~~~~~~~~Hsg~~~~~~--~~~-~~~~~~p~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT 114 (135)
+.++++++.-.--+.|.-..+|-. .++ .=++..-.+|..||.... +.||+- ..++|.+...-
T Consensus 198 ~~i~v~~tnQiHkWsHTy~gLP~wVv~LQd~hlilpRkhH~iHH~aPh-~~yyCI-~tGw~N~~Le~ 262 (293)
T KOG3011|consen 198 FAICVLFTNQIHKWSHTYSGLPPWVVLLQDMHLILPRKHHRIHHVAPH-NTYYCI-VSGWWNWVLDE 262 (293)
T ss_pred HHHHHHHHHHHHHHHhhhccCchHHHHHhhcceecccccccccccCcc-ccceEE-eechhhchHHH
Confidence 334555666666788855556632 111 113446788999998754 789997 78888876543
No 13
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=62.76 E-value=13 Score=26.85 Aligned_cols=76 Identities=26% Similarity=0.327 Sum_probs=39.7
Q ss_pred hhchhhhhcCCCCCCCcccccccCHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHhhCCcccCC-----C--
Q 043402 2 LYRHIHSQHHRLVVPYAIGALYNHPLEGLLLDTLGGALSFLVSRMTTRTAVIFFCFAVIKIVDDHSGLWLPG-----N-- 74 (135)
Q Consensus 2 ly~~~H~~HH~~~~~~~~~~~~~hp~E~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Hsg~~~~~-----~-- 74 (135)
.||+.|..||...+. .-+-... +.++. -++|. +..+..+..+.++..|.+.+-.. .
T Consensus 72 ~~r~~H~~HH~~~~~-~~Dpd~~---~~~~~----W~~P~---------~~~~~~~~~~~~~~eH~~~~~~~~~~~~~tr 134 (175)
T cd03510 72 AYRRSHLKHHRHLGT-EDDPDLA---LYLLL----WLVPL---------LTVFPLIGRIREIAEHAGVPADEDPDARNTR 134 (175)
T ss_pred HHHHHHHHHhCccCC-CCCCcHH---HHHHH----HHHHH---------HHHHHHHHHHHHHHhccCCCCCCcchhhcCc
Confidence 489999999998643 1111111 11111 12221 12334456667788899863211 0
Q ss_pred --cccc---ccc--cCcccccccccCC
Q 043402 75 --IFHL---FFQ--NNITYHDVHHQLQ 94 (135)
Q Consensus 75 --~~~~---~~~--~~p~~H~~HH~~~ 94 (135)
..++ .++ ..-.+|-.||...
T Consensus 135 ~~~~~~~~r~l~~p~~~~YH~eHHl~P 161 (175)
T cd03510 135 TTFGGWIERLLFAPHNINYHLEHHLFP 161 (175)
T ss_pred cccccHHHHHHHcccCCcHHHHHhCCc
Confidence 0111 122 2678999999875
No 14
>PF12431 CitT: Transcriptional regulator
Probab=42.34 E-value=35 Score=17.52 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=16.4
Q ss_pred hHHHhHhCCCCCCccc-cCCCCCCc
Q 043402 106 SIWDRLLGTHMPYHLV-KLPEGGFE 129 (135)
Q Consensus 106 ~~wD~lfGT~~~~~~~-~~~~~g~~ 129 (135)
+-.|+||+........ ++..-||+
T Consensus 4 ~~VD~lf~~~~~~~~~~~~LPKGID 28 (30)
T PF12431_consen 4 SDVDALFNSQAKEESPAERLPKGID 28 (30)
T ss_pred HHHHHHHCcccCCCCCccCCCCCcc
Confidence 4579999998865554 44444765
No 15
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=36.98 E-value=15 Score=29.62 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=29.5
Q ss_pred cccccccccCC-----CCCccCCCCchhHHHhHhCCCCCCcc
Q 043402 84 ITYHDVHHQLQ-----GLKYNYSQPFFSIWDRLLGTHMPYHL 120 (135)
Q Consensus 84 p~~H~~HH~~~-----~~~~Nyg~~~~~~wD~lfGT~~~~~~ 120 (135)
.+.|+.||... +.+.+=|. +|+=.=++|-|..+...
T Consensus 122 vrdHR~HHk~tdTD~DPhn~~rGF-~FsHvgWl~~~k~p~~k 162 (321)
T KOG1600|consen 122 VRDHRVHHKFTDTDADPHNPRRGF-WFSHVGWLLDKKHPQVK 162 (321)
T ss_pred HhhhhhhccccccCCCCCCcccch-hhhhhhhHhccCChHHH
Confidence 68999999853 25788897 99999999999887555
No 16
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=32.95 E-value=74 Score=23.36 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=11.7
Q ss_pred hchhhhhcCCCCCC
Q 043402 3 YRHIHSQHHRLVVP 16 (135)
Q Consensus 3 y~~~H~~HH~~~~~ 16 (135)
|.+.|+.||+.++.
T Consensus 57 W~~~HR~HH~~sDt 70 (178)
T cd03505 57 WVADHRLHHRYSDT 70 (178)
T ss_pred HHHHHHHhhcccCC
Confidence 56789999999875
No 17
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=29.07 E-value=22 Score=20.33 Aligned_cols=11 Identities=27% Similarity=0.788 Sum_probs=8.7
Q ss_pred hhchhhhhcCC
Q 043402 2 LYRHIHSQHHR 12 (135)
Q Consensus 2 ly~~~H~~HH~ 12 (135)
|||.+|++|-.
T Consensus 32 MFkqIHk~~~~ 42 (47)
T PF02208_consen 32 MFKQIHKLHKP 42 (47)
T ss_pred HHHHHHhhccc
Confidence 68899998754
No 18
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.62 E-value=2.4e+02 Score=19.31 Aligned_cols=27 Identities=11% Similarity=0.203 Sum_probs=16.4
Q ss_pred hcCccHHHHHHHHHHHH---HHHHHhhCCc
Q 043402 43 VSRMTTRTAVIFFCFAV---IKIVDDHSGL 69 (135)
Q Consensus 43 l~~~~~~~~~~~~~~~~---~~~~~~Hsg~ 69 (135)
+++.+|+-++++.++.. +.++..=.|.
T Consensus 69 ~agTsPwglIv~lllGf~AG~lnv~Rsag~ 98 (116)
T COG5336 69 FAGTSPWGLIVFLLLGFGAGVLNVLRSAGK 98 (116)
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46888888777766543 4444444443
Done!