Query 043402
Match_columns 135
No_of_seqs 129 out of 1095
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 07:39:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043402.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043402hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgp_C Inner centromere protei 35.5 11 0.00039 20.4 0.7 13 108-120 24-36 (43)
2 1r7c_A Genome polyprotein; mem 13.4 63 0.0022 16.1 0.7 9 105-113 6-14 (31)
3 1u83_A Phosphosulfolactate syn 12.6 80 0.0027 23.9 1.4 43 83-132 2-47 (276)
4 3nk4_C ZONA pellucida 3; ferti 7.7 1.4E+02 0.0047 14.3 0.8 9 83-91 22-30 (30)
5 3t76_A VANU, transcriptional r 7.4 1.2E+02 0.0042 18.2 0.6 18 83-102 2-19 (88)
6 3dmp_A Uracil phosphoribosyltr 7.3 1.2E+02 0.004 21.8 0.6 7 109-115 210-216 (217)
7 1v9s_A Uracil phosphoribosyltr 7.3 1.2E+02 0.0042 21.5 0.7 8 107-114 200-207 (208)
8 2ehj_A Uracil phosphoribosyltr 7.3 1.2E+02 0.0042 21.5 0.7 8 107-114 200-207 (208)
9 1bd3_D Uprtase, uracil phospho 6.8 1.3E+02 0.0046 21.9 0.7 6 109-114 237-242 (243)
10 4af3_D Incenp, inner centromer 6.3 2.5E+02 0.0085 16.4 1.6 14 109-122 34-47 (71)
No 1
>2vgp_C Inner centromere protein A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD6; 1.7A {Xenopus laevis} PDB: 2bfy_C* 2bfx_C* 2vrx_C* 2vgo_C* 3ztx_C*
Probab=35.54 E-value=11 Score=20.39 Aligned_cols=13 Identities=38% Similarity=0.396 Sum_probs=9.8
Q ss_pred HHhHhCCCCCCcc
Q 043402 108 WDRLLGTHMPYHL 120 (135)
Q Consensus 108 wD~lfGT~~~~~~ 120 (135)
-|++||+..+++-
T Consensus 24 ~d~iFG~I~pp~L 36 (43)
T 2vgp_C 24 VDRMYGTIDSPKL 36 (43)
T ss_dssp HHHHTTTSCCCCH
T ss_pred HHHHcCCCCCcCH
Confidence 5889999877643
No 2
>1r7c_A Genome polyprotein; membrane anchor domain, HCV NS5A protein, structure, peptide, membrane protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 1r7d_A 1r7e_A 1r7f_A 1r7g_A
Probab=13.41 E-value=63 Score=16.14 Aligned_cols=9 Identities=33% Similarity=0.708 Sum_probs=6.7
Q ss_pred hhHHHhHhC
Q 043402 105 FSIWDRLLG 113 (135)
Q Consensus 105 ~~~wD~lfG 113 (135)
-.+||+++-
T Consensus 6 ~~iwdWvct 14 (31)
T 1r7c_A 6 RDIWDWICE 14 (31)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 468999873
No 3
>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=12.64 E-value=80 Score=23.87 Aligned_cols=43 Identities=19% Similarity=0.105 Sum_probs=13.0
Q ss_pred CcccccccccCCCCCccCCCCchhHHHhHh--CCCCCCccccCCCCCCc-ccc
Q 043402 83 NITYHDVHHQLQGLKYNYSQPFFSIWDRLL--GTHMPYHLVKLPEGGFE-ARL 132 (135)
Q Consensus 83 ~p~~H~~HH~~~~~~~Nyg~~~~~~wD~lf--GT~~~~~~~~~~~~g~~-~~~ 132 (135)
++.+|.-||+.++. |- -+-|++= +=..+.+.+|++..|++ .++
T Consensus 2 ~~~~~~~~~~~~~~--~~-----~~~~~m~~~~f~~~~R~~KPR~~GlT~v~D 47 (276)
T 1u83_A 2 GSSHHHHHHSSGRE--NL-----YFQGHMNDFSLELPVRTNKPRETGQSILID 47 (276)
T ss_dssp ------------------------------CCCCCCCCCCCSSCSSSCEEEEE
T ss_pred CCccccccccccch--hh-----HHhhccccccCCCCCcCCCCcccCceEEec
Confidence 35677778877632 22 2223322 21236677889999998 443
No 4
>3nk4_C ZONA pellucida 3; fertilization, oocyte, egg coat, vitelline E ZP domain, ZP module, egg-sperm interaction, species-specif recognition, speciation; HET: A2G FLC; 2.00A {Gallus gallus} PDB: 3nk3_C*
Probab=7.72 E-value=1.4e+02 Score=14.28 Aligned_cols=9 Identities=33% Similarity=0.530 Sum_probs=4.5
Q ss_pred Ccccccccc
Q 043402 83 NITYHDVHH 91 (135)
Q Consensus 83 ~p~~H~~HH 91 (135)
++..|.-||
T Consensus 22 sadhhhhhh 30 (30)
T 3nk4_C 22 SADHHHHHH 30 (30)
T ss_dssp CSCTTCCCC
T ss_pred cccccccCC
Confidence 555555444
No 5
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=7.36 E-value=1.2e+02 Score=18.15 Aligned_cols=18 Identities=22% Similarity=0.132 Sum_probs=3.1
Q ss_pred CcccccccccCCCCCccCCC
Q 043402 83 NITYHDVHHQLQGLKYNYSQ 102 (135)
Q Consensus 83 ~p~~H~~HH~~~~~~~Nyg~ 102 (135)
++..|.-||+.++ .|++.
T Consensus 2 ~~~~~~~~~~~~~--~~~~~ 19 (88)
T 3t76_A 2 GSSHHHHHHSSGR--ENLYF 19 (88)
T ss_dssp ------------C--CCCSC
T ss_pred CccccccccCCCc--cchhh
Confidence 3556777887764 36654
No 6
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} SCOP: c.61.1.1
Probab=7.34 E-value=1.2e+02 Score=21.83 Aligned_cols=7 Identities=71% Similarity=1.194 Sum_probs=4.0
Q ss_pred HhHhCCC
Q 043402 109 DRLLGTH 115 (135)
Q Consensus 109 D~lfGT~ 115 (135)
||+|||.
T Consensus 210 DR~fgt~ 216 (217)
T 3dmp_A 210 DRLFGTK 216 (217)
T ss_dssp HHHHC--
T ss_pred HhhcCCC
Confidence 7888873
No 7
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics, RI structural genomics/proteomics initiative; 2.10A {Thermus thermophilus} SCOP: c.61.1.1
Probab=7.32 E-value=1.2e+02 Score=21.53 Aligned_cols=8 Identities=50% Similarity=0.688 Sum_probs=6.0
Q ss_pred HHHhHhCC
Q 043402 107 IWDRLLGT 114 (135)
Q Consensus 107 ~wD~lfGT 114 (135)
.=||+|||
T Consensus 200 aGDR~fgt 207 (208)
T 1v9s_A 200 AGDRIYGT 207 (208)
T ss_dssp HHHHHHTC
T ss_pred HHHhccCC
Confidence 45888887
No 8
>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A {Escherichia coli}
Probab=7.32 E-value=1.2e+02 Score=21.53 Aligned_cols=8 Identities=38% Similarity=0.688 Sum_probs=6.1
Q ss_pred HHHhHhCC
Q 043402 107 IWDRLLGT 114 (135)
Q Consensus 107 ~wD~lfGT 114 (135)
.=||+|||
T Consensus 200 aGDR~fgt 207 (208)
T 2ehj_A 200 AGDKIFGT 207 (208)
T ss_dssp HHHHHHTC
T ss_pred HHHhhcCC
Confidence 45888887
No 9
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D*
Probab=6.79 E-value=1.3e+02 Score=21.94 Aligned_cols=6 Identities=67% Similarity=1.138 Sum_probs=0.0
Q ss_pred HhHhCC
Q 043402 109 DRLLGT 114 (135)
Q Consensus 109 D~lfGT 114 (135)
||+|||
T Consensus 237 DR~fGt 242 (243)
T 1bd3_D 237 DRYFGT 242 (243)
T ss_dssp HHHHTC
T ss_pred HhhcCC
No 10
>4af3_D Incenp, inner centromere protein; transferase-inhibitor complex, aurkb; HET: VX6; 2.75A {Homo sapiens}
Probab=6.32 E-value=2.5e+02 Score=16.42 Aligned_cols=14 Identities=36% Similarity=0.541 Sum_probs=0.0
Q ss_pred HhHhCCCCCCcccc
Q 043402 109 DRLLGTHMPYHLVK 122 (135)
Q Consensus 109 D~lfGT~~~~~~~~ 122 (135)
|.+||+.....-++
T Consensus 34 d~IFG~i~p~~Lee 47 (71)
T 4af3_D 34 LELFGTILPLDLED 47 (71)
T ss_dssp HHHHCCCCCCCSTT
T ss_pred HHHcCCCCCCCHHH
Done!