Query 043402
Match_columns 135
No_of_seqs 129 out of 1095
Neff 7.7
Searched_HMMs 13730
Date Mon Mar 25 07:39:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043402.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043402hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1o5oa_ c.61.1.1 (A:) Uracil P 12.1 29 0.0021 23.1 0.7 8 108-115 203-210 (210)
2 d1v9sa1 c.61.1.1 (A:1-208) Ura 11.9 30 0.0022 23.1 0.7 7 109-115 202-208 (208)
3 d1i5ea_ c.61.1.1 (A:) Uracil P 11.8 30 0.0022 23.1 0.7 8 108-115 201-208 (208)
4 d1bd3a_ c.61.1.1 (A:) Uracil P 11.1 33 0.0024 23.2 0.7 6 109-114 218-223 (224)
5 d1ijva_ g.9.1.1 (A:) Beta-defe 7.2 12 0.00088 17.9 -2.1 24 96-121 10-33 (36)
6 d1puza_ a.218.1.1 (A:) Hypothe 6.6 1.1E+02 0.0084 16.8 1.7 16 105-120 55-70 (82)
7 d2crda_ g.3.7.2 (A:) Charybdot 5.9 1.3E+02 0.0096 14.1 1.4 13 105-117 14-26 (37)
8 d1r11a3 d.75.1.1 (A:3-60) Dime 5.8 1.3E+02 0.0098 15.1 1.5 14 21-34 25-38 (58)
9 d2ftxb1 d.300.1.2 (B:155-213) 4.4 1.2E+02 0.0088 16.0 0.7 15 97-112 41-58 (59)
10 d1q90n_ f.23.27.1 (N:) PetN su 4.2 2.2E+02 0.016 12.6 1.9 6 63-68 25-30 (31)
No 1
>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima [TaxId: 2336]}
Probab=12.10 E-value=29 Score=23.14 Aligned_cols=8 Identities=50% Similarity=0.563 Sum_probs=6.0
Q ss_pred HHhHhCCC
Q 043402 108 WDRLLGTH 115 (135)
Q Consensus 108 wD~lfGT~ 115 (135)
=||+|||.
T Consensus 203 GDR~fgTk 210 (210)
T d1o5oa_ 203 GDRLFRTK 210 (210)
T ss_dssp HHHHHTCC
T ss_pred HHhhcCCC
Confidence 48888883
No 2
>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus [TaxId: 274]}
Probab=11.93 E-value=30 Score=23.05 Aligned_cols=7 Identities=57% Similarity=1.042 Sum_probs=5.5
Q ss_pred HhHhCCC
Q 043402 109 DRLLGTH 115 (135)
Q Consensus 109 D~lfGT~ 115 (135)
||+|||.
T Consensus 202 DR~fgT~ 208 (208)
T d1v9sa1 202 DRIYGTK 208 (208)
T ss_dssp HHHHTCC
T ss_pred HhccCCC
Confidence 8888883
No 3
>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus [TaxId: 1394]}
Probab=11.78 E-value=30 Score=23.09 Aligned_cols=8 Identities=63% Similarity=0.879 Sum_probs=6.1
Q ss_pred HHhHhCCC
Q 043402 108 WDRLLGTH 115 (135)
Q Consensus 108 wD~lfGT~ 115 (135)
=||+|||.
T Consensus 201 GDR~fGT~ 208 (208)
T d1i5ea_ 201 GDRLFGTK 208 (208)
T ss_dssp HHHHHSCC
T ss_pred HHhccCCC
Confidence 48888883
No 4
>d1bd3a_ c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondii [TaxId: 5811]}
Probab=11.13 E-value=33 Score=23.18 Aligned_cols=6 Identities=67% Similarity=1.138 Sum_probs=4.6
Q ss_pred HhHhCC
Q 043402 109 DRLLGT 114 (135)
Q Consensus 109 D~lfGT 114 (135)
||+|||
T Consensus 218 DR~fGT 223 (224)
T d1bd3a_ 218 DRYFGT 223 (224)
T ss_dssp HHHHTC
T ss_pred HhhcCC
Confidence 777777
No 5
>d1ijva_ g.9.1.1 (A:) Beta-defensin, BD {Human (Homo sapiens), HBD1 [TaxId: 9606]}
Probab=7.21 E-value=12 Score=17.89 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=18.1
Q ss_pred CCccCCCCchhHHHhHhCCCCCCccc
Q 043402 96 LKYNYSQPFFSIWDRLLGTHMPYHLV 121 (135)
Q Consensus 96 ~~~Nyg~~~~~~wD~lfGT~~~~~~~ 121 (135)
+..||+. -++..|+=||.+..+++
T Consensus 10 g~c~~s~--cpl~~ri~gtcy~gkak 33 (36)
T d1ijva_ 10 GQCLYSA--CPIFTKIQGTCYRGKAK 33 (36)
T ss_dssp CEEESSC--CCTTCCEEEEETTTTEE
T ss_pred ceecccc--CcceEeeeeeEeccccc
Confidence 4689984 68888999998766543
No 6
>d1puza_ a.218.1.1 (A:) Hypothetical protein NMA1147 {Neisseria meningitidis, mc58 [TaxId: 487]}
Probab=6.64 E-value=1.1e+02 Score=16.77 Aligned_cols=16 Identities=6% Similarity=-0.109 Sum_probs=11.7
Q ss_pred hhHHHhHhCCCCCCcc
Q 043402 105 FSIWDRLLGTHMPYHL 120 (135)
Q Consensus 105 ~~~wD~lfGT~~~~~~ 120 (135)
-.+||++.|....|..
T Consensus 55 ~dL~~wl~g~~~~p~~ 70 (82)
T d1puza_ 55 QELLALINGHSETDKG 70 (82)
T ss_dssp HHHHHHHHTCSCCSCT
T ss_pred HHHHHHHhCCCCCCcH
Confidence 4788888888776654
No 7
>d2crda_ g.3.7.2 (A:) Charybdotoxin {Scorpion (Leiurus quinquestriatus hebraeus) [TaxId: 6884]}
Probab=5.91 E-value=1.3e+02 Score=14.13 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=10.8
Q ss_pred hhHHHhHhCCCCC
Q 043402 105 FSIWDRLLGTHMP 117 (135)
Q Consensus 105 ~~~wD~lfGT~~~ 117 (135)
+++.-++|||.+.
T Consensus 14 W~vCk~~~g~~rG 26 (37)
T d2crda_ 14 WSVCQRLHNTSRG 26 (37)
T ss_dssp HHHHHHHSSCCCE
T ss_pred hHHHHHHhCCCcc
Confidence 6788899999875
No 8
>d1r11a3 d.75.1.1 (A:3-60) Dimeric tRNA splicing endonuclease, domains 1 and 3 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=5.77 E-value=1.3e+02 Score=15.09 Aligned_cols=14 Identities=43% Similarity=0.743 Sum_probs=10.6
Q ss_pred ccccCHHHHHHHHH
Q 043402 21 ALYNHPLEGLLLDT 34 (135)
Q Consensus 21 ~~~~hp~E~~l~~~ 34 (135)
-.|.||+|.+....
T Consensus 25 kiylhplevvylqi 38 (58)
T d1r11a3 25 KIYLHPLEVVYLQI 38 (58)
T ss_dssp EEEECHHHHHHHHH
T ss_pred EEEeeeeeEEEEEE
Confidence 45889999887653
No 9
>d2ftxb1 d.300.1.2 (B:155-213) Kinetochore protein Spc24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.38 E-value=1.2e+02 Score=16.00 Aligned_cols=15 Identities=47% Similarity=0.919 Sum_probs=9.7
Q ss_pred CccCCCCch---hHHHhHh
Q 043402 97 KYNYSQPFF---SIWDRLL 112 (135)
Q Consensus 97 ~~Nyg~~~~---~~wD~lf 112 (135)
+.+|+. +| -+||+|-
T Consensus 41 d~k~S~-fF~tnYiWd~L~ 58 (59)
T d2ftxb1 41 DNNLSD-FYKTKYIWERLG 58 (59)
T ss_dssp CTTSCH-HHHHHHHHHHHT
T ss_pred CCcccH-HHHHHHHHHHhc
Confidence 346774 55 4899874
No 10
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.20 E-value=2.2e+02 Score=12.62 Aligned_cols=6 Identities=50% Similarity=0.429 Sum_probs=2.4
Q ss_pred HHhhCC
Q 043402 63 VDDHSG 68 (135)
Q Consensus 63 ~~~Hsg 68 (135)
+++-||
T Consensus 25 vwgrsg 30 (31)
T d1q90n_ 25 VWGRSG 30 (31)
T ss_dssp HHHHTC
T ss_pred EEeccC
Confidence 344443
Done!