BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043403
         (124 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1CFE|A Chain A, P14a, Nmr, 20 Structures
          Length = 135

 Score =  149 bits (377), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/123 (59%), Positives = 90/123 (73%), Gaps = 3/123 (2%)

Query: 1   RAQVGVGPVTWDDRVASYAQNYANQRKGDCNLVHSGGPYGENLAWSSAGLSGTDAVKMWV 60
           RAQVGVGP++WD  +AS AQNYAN R GDCNL+HSG   GENLA      +G  AV++WV
Sbjct: 15  RAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHSGA--GENLAKGGGDFTGRAAVQLWV 72

Query: 61  NEKADYDYNSNTCAEGKVCGHYTQVVWRNSVRIGCAKVTCNNNKGTFIGCNYDPPGNFVG 120
           +E+  Y+Y +N C  GK C HYTQVVWRNSVR+GC +  CNN    FI CNYDP GN++G
Sbjct: 73  SERPSYNYATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNGW-WFISCNYDPVGNWIG 131

Query: 121 EKP 123
           ++P
Sbjct: 132 QRP 134


>pdb|1RC9|A Chain A, Crystal Structure Of Stecrisp, A Member Of Crisp Family
           From Trimeresurus Stejnegeri Refined At 1.6 Angstroms
           Resolution: Structual Relationship Of The Two Domains
          Length = 221

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 40  GENLAWSSAGLSGTDAVKMWVNEKADYDYNSNTCAEGKVCGHYTQVVWRNSVRIGCAKVT 99
           GEN+  S   +  TD +  W +E  D+ Y         V GHYTQ+VW  S RIGCA   
Sbjct: 74  GENIYMSPYPMKWTDIIHAWHDEYKDFKYGVGADPPNAVTGHYTQIVWYKSYRIGCAAAY 133

Query: 100 CNNNKGT-FIGCNYDPPGNFVGE 121
           C ++  + F  C Y P GNF+G+
Sbjct: 134 CPSSPYSYFFVCQYCPAGNFIGK 156


>pdb|1SMB|A Chain A, Crystal Structure Of Golgi-Associated Pr-1 Protein
          Length = 154

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 7/125 (5%)

Query: 1   RAQVGVGPVTWDDRVASYAQNYANQRKGDCNLVHS----GGPYGENLAWSSAGLSGTDAV 56
           R + GV P+     +   AQ Y+        L HS     G  GENLAW+S   +G +  
Sbjct: 21  RQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQXGENLAWASYDQTGKEVA 80

Query: 57  KMWVNEKADYDYNSNTCAEGKVCGHYTQVVWRNSVRIGCAKVTCNNNKGTFIGCNYDPPG 116
             W +E  +Y++       G   GH+T +VW+N+ ++G  K + ++   +F+   Y P G
Sbjct: 81  DRWYSEIKNYNFQQPGFTSG--TGHFTAMVWKNTKKMGVGKASASDG-SSFVVARYFPAG 137

Query: 117 NFVGE 121
           N V E
Sbjct: 138 NVVNE 142


>pdb|2DDA|A Chain A, Crystal Structure Of Pseudechetoxin From Pseudechis
           Australis
 pdb|2DDA|B Chain B, Crystal Structure Of Pseudechetoxin From Pseudechis
           Australis
 pdb|2DDA|C Chain C, Crystal Structure Of Pseudechetoxin From Pseudechis
           Australis
 pdb|2DDA|D Chain D, Crystal Structure Of Pseudechetoxin From Pseudechis
           Australis
          Length = 211

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 13/121 (10%)

Query: 9   VTWDDRVASYAQNYANQRKGDCNLVHSGG--------PYGENLAWSSAGLSGTDAVKMWV 60
           + W+ R A  A+ +AN+    C   HS            GEN+  SS     +  V+ W 
Sbjct: 31  MKWNSRAAQNAKRWANR----CTFAHSPPNKRTVGKLRCGENIFMSSQPFPWSGVVQAWY 86

Query: 61  NEKADYDYNSNTCAEGKVCGHYTQVVWRNSVRIGCAKVTCNNNKGTFIGCNYDPPGNFVG 120
           +E  ++ Y       G V GHYTQVVW  S  IGCA   C+++K  ++ C Y P GN  G
Sbjct: 87  DEIKNFVYGIGAKPPGSVIGHYTQVVWYKSYLIGCASAKCSSSKYLYV-CQYCPAGNIRG 145

Query: 121 E 121
            
Sbjct: 146 S 146


>pdb|3Q2R|A Chain A, Crystal Structure Of Sglipr1 Soaked With Zinc Chloride
 pdb|3Q2U|A Chain A, Structure Of Human Glioma Pathogenesis-Related Protein 1
           Reveals Unique Loops And Surface Motifs
          Length = 205

 Score = 63.2 bits (152), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 62/126 (49%), Gaps = 18/126 (14%)

Query: 9   VTWDDRVASYAQNYA-------NQRKGDCNLVHSG-GPYGENLAWSSAGL-SGTDAVKMW 59
           +TWD  +A  A+ +A       N R    + +H      GEN+   S  + S + A+  W
Sbjct: 43  MTWDPALAQIAKAWASNCQFSHNTRLKPPHKLHPNFTSLGENIWTGSVPIFSVSSAITNW 102

Query: 60  VNEKADYDYNSNTCAEGKVCGHYTQVVWRNSVRIGCAKVTCNN-------NKGTFIGCNY 112
            +E  DYD+ +  C   KVCGHYTQVVW +S ++GCA   C         + G    CNY
Sbjct: 103 YDEIQDYDFKTRICK--KVCGHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFICNY 160

Query: 113 DPPGNF 118
            P GN+
Sbjct: 161 GPGGNY 166


>pdb|4AIW|A Chain A, Gapr-1 With Bound Inositol Hexakisphosphate
          Length = 154

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 7/125 (5%)

Query: 1   RAQVGVGPVTWDDRVASYAQNYANQRKGDCNLVHS----GGPYGENLAWSSAGLSGTDAV 56
           R + GV P+     +   AQ Y+        L HS     G  GENLAW+S   +G +  
Sbjct: 21  RQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWASYDQTGKEVA 80

Query: 57  KMWVNEKADYDYNSNTCAEGKVCGHYTQVVWRNSVRIGCAKVTCNNNKGTFIGCNYDPPG 116
             W +E  +Y++       G   GH+T +VW+N+ ++G  K + ++   +F+   Y P G
Sbjct: 81  DRWYSEIKNYNFQQPGFTSG--TGHFTAMVWKNTKKMGVGKASASDG-SSFVVARYFPAG 137

Query: 117 NFVGE 121
           N V E
Sbjct: 138 NVVNE 142


>pdb|2VZN|A Chain A, Crystal Structure  Of The Major  Allergen From Fire Ant
           Venom, Sol I 3
 pdb|2VZN|B Chain B, Crystal Structure  Of The Major  Allergen From Fire Ant
           Venom, Sol I 3
          Length = 218

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 24/140 (17%)

Query: 4   VGVGPVTWDDRVASYAQNYANQRKGDCNLVHSG------GPYGENLAWSSAG----LSGT 53
           V +  +TWD  +A+ AQ +ANQ    C   H           G+N+A +S+      +  
Sbjct: 74  VKMPNLTWDPELATIAQRWANQ----CTFEHDACRNVERFAVGQNIAATSSSGKNKSTPN 129

Query: 54  DAVKMWVNEKADYD------YNSNTCAEGKVCGHYTQVVWRNSVRIGCAKVTC---NNNK 104
           + + +W NE  D+D      + S+     KV GHYTQ+VW  + +IGC ++     +N  
Sbjct: 130 EMILLWYNEVKDFDNRWISSFPSDDNILMKV-GHYTQIVWAKTTKIGCGRIMFKEPDNWT 188

Query: 105 GTFIGCNYDPPGNFVGEKPY 124
             ++ CNY P GN +G   Y
Sbjct: 189 KHYLVCNYGPAGNVLGAPIY 208


>pdb|1XTA|A Chain A, Crystal Structure Of Natrin, A Snake Venom Crisp From
           Taiwan Cobra (Naja Atra)
 pdb|1XTA|B Chain B, Crystal Structure Of Natrin, A Snake Venom Crisp From
           Taiwan Cobra (Naja Atra)
          Length = 221

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 13/122 (10%)

Query: 9   VTWDDRVASYAQNYANQRKGDCNLVHS--------GGPYGENLAWSSAGLSGTDAVKMWV 60
           + W    AS A+ +AN     C+L HS        G   GE++  SS   + T+ + +W 
Sbjct: 39  MEWYPEAASNAERWANT----CSLNHSPDNLRVLEGIQCGESIYMSSNARTWTEIIHLWH 94

Query: 61  NEKADYDYNSNTCAEGKVCGHYTQVVWRNSVRIGCAKVTCNNNKGT-FIGCNYDPPGNFV 119
           +E  ++ Y       G V GHYTQ+VW  + R GCA   C ++  + F  C Y P GNF 
Sbjct: 95  DEYKNFVYGVGASPPGSVTGHYTQIVWYQTYRAGCAVSYCPSSAWSYFYVCQYCPSGNFQ 154

Query: 120 GE 121
           G+
Sbjct: 155 GK 156


>pdb|1XX5|A Chain A, Crystal Structure Of Natrin From Naja Atra Snake Venom
 pdb|1XX5|B Chain B, Crystal Structure Of Natrin From Naja Atra Snake Venom
 pdb|1XX5|C Chain C, Crystal Structure Of Natrin From Naja Atra Snake Venom
 pdb|2GIZ|A Chain A, Structural And Functional Analysis Of Natrin, A Member Of
           Crisp-3 Family Blocks A Variety Of Ion Channels
 pdb|2GIZ|B Chain B, Structural And Functional Analysis Of Natrin, A Member Of
           Crisp-3 Family Blocks A Variety Of Ion Channels
 pdb|3MZ8|A Chain A, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
 pdb|3MZ8|B Chain B, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
          Length = 221

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 13/122 (10%)

Query: 9   VTWDDRVASYAQNYANQRKGDCNLVHS--------GGPYGENLAWSSAGLSGTDAVKMWV 60
           + W    AS A+ +AN     C+L HS        G   GE++  SS   + T+ + +W 
Sbjct: 39  MEWYPEAASNAERWANT----CSLNHSPDNLRVLEGIQCGESIYMSSNARTWTEIIHLWH 94

Query: 61  NEKADYDYNSNTCAEGKVCGHYTQVVWRNSVRIGCAKVTCNNNKGT-FIGCNYDPPGNFV 119
           +E  ++ Y       G V GHYTQ+VW  + R GCA   C ++  + F  C Y P GNF 
Sbjct: 95  DEYKNFVYGVGANPPGSVTGHYTQIVWYQTYRAGCAVSYCPSSAWSYFYVCQYCPSGNFQ 154

Query: 120 GE 121
           G+
Sbjct: 155 GK 156


>pdb|2DDB|A Chain A, Crystal Structure Of Pseudecin From Pseudechis
           Porphyriacus
 pdb|2DDB|B Chain B, Crystal Structure Of Pseudecin From Pseudechis
           Porphyriacus
 pdb|2DDB|C Chain C, Crystal Structure Of Pseudecin From Pseudechis
           Porphyriacus
 pdb|2DDB|D Chain D, Crystal Structure Of Pseudecin From Pseudechis
           Porphyriacus
 pdb|2EPF|A Chain A, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
           Porphyriacus
 pdb|2EPF|B Chain B, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
           Porphyriacus
 pdb|2EPF|C Chain C, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
           Porphyriacus
 pdb|2EPF|D Chain D, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
           Porphyriacus
          Length = 210

 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 13/121 (10%)

Query: 9   VTWDDRVASYAQNYANQRKGDCNLVHSGG--------PYGENLAWSSAGLSGTDAVKMWV 60
           + W+   A  A+ +A++    C   HS            GEN+  SS     +  V+ W 
Sbjct: 30  MKWNSHAAQNAKRWADR----CTFAHSPPNTRTVGKLRCGENIFMSSQPFPWSGVVQAWY 85

Query: 61  NEKADYDYNSNTCAEGKVCGHYTQVVWRNSVRIGCAKVTCNNNKGTFIGCNYDPPGNFVG 120
           +E  ++ Y       G V GHYTQVVW  S  IGCA   C+++K  ++ C Y P GN  G
Sbjct: 86  DEIKNFVYGIGAKPPGSVIGHYTQVVWYKSHLIGCASAKCSSSKYLYV-CQYCPAGNIRG 144

Query: 121 E 121
            
Sbjct: 145 S 145


>pdb|1WVR|A Chain A, Crystal Structure Of A Crisp Family Ca-Channel Blocker
           Derived From Snake Venom
          Length = 221

 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 40  GENLAWSSAGLSGTDAVKMWVNEKADYDYNSNTCAEGKVCGHYTQVVWRNSVRIGCAKVT 99
           GEN+  ++     TD +  W  E  D+ Y         V GHYTQ+VW  S R GCA   
Sbjct: 74  GENIYMATYPAKWTDIIHAWHGEYKDFKYGVGAVPSDAVIGHYTQIVWYKSYRAGCAAAY 133

Query: 100 CNNNKGT-FIGCNYDPPGNFVGE 121
           C ++K + F  C Y P GN +G+
Sbjct: 134 CPSSKYSYFYVCQYCPAGNIIGK 156


>pdb|1QNX|A Chain A, Ves V 5, An Allergen From Vespula Vulgaris Venom
          Length = 209

 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 9/125 (7%)

Query: 9   VTWDDRVASYAQNYANQRKGDCNLVHSGGPY--GENLAWSSAGLSGTD----AVKMWVNE 62
           + W+D +A  AQ +ANQ +   +       Y  G+N+A + +  +  D     VKMW +E
Sbjct: 82  LVWNDELAYVAQVWANQCQYGHDTCRDVAKYQVGQNVALTGSTAAKYDDPVKLVKMWEDE 141

Query: 63  KADYDYNSNTCAEGKV-CGHYTQVVWRNSVRIGCAKVTCNNNK--GTFIGCNYDPPGNFV 119
             DY+          +  GHYTQ+VW N+  +GC  +     K    ++ CNY P GNF 
Sbjct: 142 VKDYNPKKKFSGNDFLKTGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNFK 201

Query: 120 GEKPY 124
            E+ Y
Sbjct: 202 NEELY 206


>pdb|1U53|A Chain A, Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein From The
           Nematode Parasite Necator Americanus And A Vaccine
           Antigen For Human Hookworm Infection
          Length = 196

 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 21/116 (18%)

Query: 18  YAQNYANQRKGDCNLVHSGGPYGENLAWSS-AGL----SGTDAVKMWVNEKADYDYNSNT 72
           +  +  NQRKG           GEN+  SS +G+    +   A K W  E A+     N 
Sbjct: 72  FKHSQPNQRKG----------LGENIFMSSDSGMDKAKAAEQASKAWFGELAEKGVGQNL 121

Query: 73  CAEGKV----CGHYTQVVWRNSVRIGCAKVTCNNNKGTFIGCNYDPPGNFVGEKPY 124
              G +     GHYTQ+VW+ +V++GC    C+N    ++ C Y P GN +G+  Y
Sbjct: 122 KLTGGLFSRGVGHYTQMVWQETVKLGCYVEACSNM--CYVVCQYGPAGNMMGKDIY 175


>pdb|3NT8|A Chain A, Crystal Structure Of Na-Asp-1
 pdb|3NT8|B Chain B, Crystal Structure Of Na-Asp-1
          Length = 424

 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 22/132 (16%)

Query: 9   VTWDDRVASYAQNYANQRKGDCNLVHSGGP----YGENLAWSSA-----GLSGTDAVKMW 59
           + +D  V + A  + N+    C   HS G      GEN+  +S        +   A ++W
Sbjct: 274 MVYDCEVEASAIRHGNK----CVYQHSHGEDRPGLGENIYKTSVLKFDKNKAAKQASQLW 329

Query: 60  VNEKADYDYNSNTCAEGKV-------CGHYTQVVWRNSVRIGCAKVTCNNNKGTFIGCNY 112
            NE  +Y    +      +        GHYTQ+ W  + ++GCA V CN+   TF  C Y
Sbjct: 330 WNELKEYGVGPSNVLTTALWNRPNMQIGHYTQMAWDTTYKLGCAVVFCNDF--TFGVCQY 387

Query: 113 DPPGNFVGEKPY 124
            P GN++G   Y
Sbjct: 388 GPGGNYMGHVIY 399


>pdb|2IUJ|A Chain A, Crystal Structure Of Soybean Lipoxygenase-B
          Length = 853

 Score = 28.1 bits (61), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)

Query: 37  GPYG-----ENLAWSSAGLSGTDAVKMWVNEKADYDYNSN 71
            P+G     E+  ++S GL   DA+K WV E   + Y S+
Sbjct: 611 APHGVRLLIEDYPYASDGLEIWDAIKSWVEEYVSFYYKSD 650


>pdb|3DAS|A Chain A, Structure Of The Pqq-Bound Form Of Aldose Sugar
           Dehydrogenase (Adh) From Streptomyces Coelicolor
          Length = 347

 Score = 27.3 bits (59), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 9   VTWDDRVASYAQNYANQRKGDCNLVHSGGPYGENLAWSSAGLSG-TDAVKMWVNEKADYD 67
           + WDD+   +A  +      + N +  G  YG   A    G SG  D V  W  ++A   
Sbjct: 207 LAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA--S 264

Query: 68  YNSNTCAEGKV--CGHYTQVVWRNSVR 92
            +    AEG V   G   + +WR  ++
Sbjct: 265 PSGIAYAEGSVWXAGLRGERLWRIPLK 291


>pdb|3OZH|A Chain A, Crystal Structure Of Beta-LactamaseD-Alanine
           Carboxypeptidase From Yersinia Pestis
 pdb|3RJU|A Chain A, Crystal Structure Of Beta-LactamaseD-Alanine
           Carboxypeptidase From Yersinia Pestis Complexed With
           Citrate
          Length = 351

 Score = 27.3 bits (59), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 70  SNTCAEGKVCGHYTQVVWRNSVRIGCAKVTCNNNKGTFIGCNYDPPGNFVGEKP 123
           SN     ++   Y + ++ NS  +G A V  +NN+          PGN +  +P
Sbjct: 1   SNALLTSQIVDQYAEHIFYNSGAVGXALVVIDNNQVVNRSFGETQPGNNIRPRP 54


>pdb|3R0E|B Chain B, Structure Of Remusatia Vivipara Lectin
 pdb|3R0E|D Chain D, Structure Of Remusatia Vivipara Lectin
          Length = 110

 Score = 26.9 bits (58), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 19 AQNYANQRKGDCNLVHSGGPYG 40
          A+N+    +GDCNLV  GG YG
Sbjct: 23 AKNHQLVMQGDCNLVLYGGKYG 44


>pdb|3VOC|A Chain A, Crystal Structure Of The Catalytic Domain Of Beta-amylase
           From Paenibacillus Polymyxa
          Length = 419

 Score = 26.6 bits (57), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 11  WDDRVASYAQNYANQRKGDCNLVHSGGPYGE 41
           +D+  AS+A+N+A  +     +  SGGP GE
Sbjct: 133 YDELYASFAENFAGYKSIIPKIYLSGGPSGE 163


>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
           Cellulolyticum
 pdb|1IA7|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
           Cellulolyticium In Complex With Cellobiose
          Length = 441

 Score = 26.2 bits (56), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 16/67 (23%), Positives = 29/67 (43%)

Query: 18  YAQNYANQRKGDCNLVHSGGPYGENLAWSSAGLSGTDAVKMWVNEKADYDYNSNTCAEGK 77
           YA   ANQ  G+    +    +G++LAW++  L        ++ +   +    NT  E K
Sbjct: 188 YAMGKANQGVGNGQSFYQATSFGDDLAWAATWLYTATNDSTYITDAEQFITLGNTMNENK 247

Query: 78  VCGHYTQ 84
           +   +T 
Sbjct: 248 MQDKWTM 254


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.134    0.445 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,798,526
Number of Sequences: 62578
Number of extensions: 203090
Number of successful extensions: 406
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 367
Number of HSP's gapped (non-prelim): 27
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)