Query 043403
Match_columns 124
No_of_seqs 115 out of 1062
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 04:42:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043403.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043403hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05381 SCP_PR-1_like SCP_PR-1 100.0 5.6E-40 1.2E-44 211.1 13.8 124 1-124 12-136 (136)
2 cd05384 SCP_PRY1_like SCP_PRY1 100.0 1.2E-35 2.5E-40 189.5 11.9 116 1-120 14-129 (129)
3 cd05382 SCP_GAPR-1_like SCP_GA 100.0 1.6E-34 3.4E-39 184.6 8.8 115 1-118 14-132 (132)
4 cd05383 SCP_CRISP SCP_CRISP: S 100.0 4.2E-33 9.2E-38 179.6 12.0 110 2-115 20-138 (138)
5 cd05385 SCP_GLIPR-1_like SCP_G 100.0 2.7E-32 5.8E-37 177.0 11.9 108 2-115 20-144 (144)
6 smart00198 SCP SCP / Tpx-1 / A 100.0 6.7E-32 1.5E-36 174.8 11.4 110 2-115 26-144 (144)
7 KOG3017 Defense-related protei 100.0 4.5E-32 9.8E-37 187.2 7.3 117 4-124 61-198 (225)
8 cd05559 SCP_HrTT-1 SCP_HrTT-1: 100.0 5.6E-31 1.2E-35 169.3 11.1 108 2-113 18-136 (136)
9 cd00168 SCP SCP: SCP-like extr 100.0 1.2E-30 2.6E-35 164.8 10.8 106 1-113 12-122 (122)
10 cd05380 SCP_euk SCP_euk: SCP-l 100.0 2.4E-29 5.1E-34 162.3 10.5 108 2-113 25-144 (144)
11 PF00188 CAP: Cysteine-rich se 99.8 1E-19 2.2E-24 112.4 9.1 108 1-112 9-124 (124)
12 TIGR02909 spore_YkwD uncharact 99.7 9E-17 1.9E-21 102.2 8.4 93 1-112 16-125 (127)
13 cd05379 SCP_bacterial SCP_bact 99.5 5.2E-14 1.1E-18 87.9 7.5 93 1-112 12-121 (122)
14 COG2340 Uncharacterized protei 98.9 2.6E-09 5.7E-14 73.2 6.0 82 1-100 92-191 (207)
15 KOG0286 G-protein beta subunit 66.7 3.7 8.1E-05 30.0 1.5 34 83-118 78-111 (343)
16 PF04648 MF_alpha: Yeast matin 41.3 15 0.00033 13.7 0.7 6 119-124 8-13 (13)
17 PF13983 YsaB: YsaB-like lipop 34.6 29 0.00063 19.6 1.4 14 105-118 58-71 (77)
18 PF04863 EGF_alliinase: Alliin 34.1 47 0.001 17.9 2.1 16 9-24 1-16 (56)
19 PF09007 EBP50_C-term: EBP50, 29.3 28 0.0006 17.5 0.7 16 1-16 21-36 (41)
20 COG1318 Predicted transcriptio 28.7 52 0.0011 22.2 2.1 21 5-25 38-58 (182)
21 PF11903 DUF3423: Protein of u 28.2 71 0.0015 18.2 2.3 19 6-24 1-19 (72)
22 PHA00684 hypothetical protein 26.8 21 0.00046 22.6 -0.0 11 90-100 79-89 (128)
23 PRK10721 hypothetical protein; 26.6 1E+02 0.0022 17.3 2.6 33 55-89 31-63 (66)
24 PF11952 DUF3469: Protein of u 25.8 15 0.00032 21.7 -0.8 16 83-98 39-54 (87)
25 PF03290 Peptidase_C57: Vaccin 23.3 43 0.00093 25.5 1.0 17 105-121 252-268 (423)
26 PF00383 dCMP_cyt_deam_1: Cyti 20.9 89 0.0019 18.2 2.0 16 9-24 1-16 (102)
No 1
>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=5.6e-40 Score=211.11 Aligned_cols=124 Identities=69% Similarity=1.361 Sum_probs=112.4
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHHhhcCCCccccCCCCccceEEEecCC-CChHHHHHHHHhhhccCCCCCCCCCCCccc
Q 043403 1 RAQVGVGPVTWDDRVASYAQNYANQRKGDCNLVHSGGPYGENLAWSSAG-LSGTDAVKMWVNEKADYDYNSNTCAEGKVC 79 (124)
Q Consensus 1 R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~~Gen~~~~~~~-~~~~~~v~~W~~~~~~~~~~~~~~~~~~~~ 79 (124)
|..++|++|+||++||+.||.||++|+..|...|+...+|||+++..+. ..+.++|+.|++|.+.|++..+.+..+..+
T Consensus 12 R~~~~~~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~~~GeNi~~~~~~~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~ 91 (136)
T cd05381 12 RAAVGVPPLKWDDTLAAYAQRYANQRRGDCALVHSNGPYGENLFWGSGGNWSAADAVASWVSEKKYYDYDSNTCAAGKMC 91 (136)
T ss_pred HHhcCCCcceECHHHHHHHHHHHHHhcCCCCcccCCCCCCceEEEecCCCCCHHHHHHHHHhccccCCCCCCCcCCCccc
Confidence 6788999999999999999999998888899988877899999987743 578899999999999999988777666779
Q ss_pred hHHHHHHHHhCceEEEEEEEecCCCcEEEEEEecCCCCCCCCCCC
Q 043403 80 GHYTQVVWRNSVRIGCAKVTCNNNKGTFIGCNYDPPGNFVGEKPY 124 (124)
Q Consensus 80 ~~ftqmiw~~~~~vGC~~~~c~~~~~~~~vC~Y~p~gn~~~~~~Y 124 (124)
+|||||||+++++||||++.|..++..++||+|+|+||+.|++||
T Consensus 92 ~hftq~vw~~t~~vGCa~~~c~~~~~~~vvC~Y~p~gn~~g~~~Y 136 (136)
T cd05381 92 GHYTQVVWRNTTRVGCARVTCDNGGGVFIICNYDPPGNYIGQRPY 136 (136)
T ss_pred hHHHHHHHHhcCEeceEEEEeCCCCcEEEEEEeeCCCCCCCCCCC
Confidence 999999999999999999999554678999999999999999998
No 2
>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.
Probab=100.00 E-value=1.2e-35 Score=189.45 Aligned_cols=116 Identities=49% Similarity=0.951 Sum_probs=100.9
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHHhhcCCCccccCCCCccceEEEecCCCChHHHHHHHHhhhccCCCCCCCCCCCccch
Q 043403 1 RAQVGVGPVTWDDRVASYAQNYANQRKGDCNLVHSGGPYGENLAWSSAGLSGTDAVKMWVNEKADYDYNSNTCAEGKVCG 80 (124)
Q Consensus 1 R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~~Gen~~~~~~~~~~~~~v~~W~~~~~~~~~~~~~~~~~~~~~ 80 (124)
|+.++|++|+||.+|+..|+.||++|+..|.+.|+.+.+|||++...+ ++..+|+.|++|.+.|+++.+.+. ..++
T Consensus 14 R~~~g~~~L~w~~~La~~A~~~a~~c~~~~~~~~~~~~~geNi~~~~~--~~~~~v~~W~~e~~~y~~~~~~~~--~~~~ 89 (129)
T cd05384 14 RALHGVQPLTWNNTLAEYAQDYANSYDCSGNLAHSGGPYGENLAAGYP--SGTSAVDAWYDEIEDYDYSNPGFS--EATG 89 (129)
T ss_pred HHHcCCCcCccCHHHHHHHHHHHHHhccCCceecCCCCCCcEEEEecC--CHHHHHHHHHhhhhhCCCCCCCCC--Cccc
Confidence 677999999999999999999999776666688888889999987653 678999999999999998775443 5689
Q ss_pred HHHHHHHHhCceEEEEEEEecCCCcEEEEEEecCCCCCCC
Q 043403 81 HYTQVVWRNSVRIGCAKVTCNNNKGTFIGCNYDPPGNFVG 120 (124)
Q Consensus 81 ~ftqmiw~~~~~vGC~~~~c~~~~~~~~vC~Y~p~gn~~~ 120 (124)
|||||||+++++||||++.|......++||+|+|+||+.|
T Consensus 90 h~tqmvw~~t~~vGCa~~~c~~~~~~~~vC~Y~p~Gn~~g 129 (129)
T cd05384 90 HFTQLVWKSTTQVGCAYKDCGGAWGWYIVCEYDPAGNVIG 129 (129)
T ss_pred chhhhhhhccceeeeEEEEeCCCCeEEEEEEEECCCCCCc
Confidence 9999999999999999999944346889999999999875
No 3
>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms.
Probab=100.00 E-value=1.6e-34 Score=184.62 Aligned_cols=115 Identities=37% Similarity=0.653 Sum_probs=100.4
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHHhhcCCCccccCCC-CccceEEEecC---CCChHHHHHHHHhhhccCCCCCCCCCCC
Q 043403 1 RAQVGVGPVTWDDRVASYAQNYANQRKGDCNLVHSGG-PYGENLAWSSA---GLSGTDAVKMWVNEKADYDYNSNTCAEG 76 (124)
Q Consensus 1 R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~-~~Gen~~~~~~---~~~~~~~v~~W~~~~~~~~~~~~~~~~~ 76 (124)
|..++|++|+||++|+..||.||++|+..+.+.|+.. .+|||++...+ ...+.++|+.|++|...|++..+...
T Consensus 14 R~~~g~~~L~wd~~La~~A~~~a~~c~~~~~~~h~~~~~~GeN~~~~~~~~~~~~~~~~v~~W~~e~~~y~~~~~~~~-- 91 (132)
T cd05382 14 RALHGAPPLKLDKELAKEAQKWAEKLASSGKLQHSSPSGYGENLAYASGSGPDLTGEEAVDSWYNEIKKYDFNKPGFS-- 91 (132)
T ss_pred HHHcCCCcCeeCHHHHHHHHHHHHHhhhcCceeCCCCCCCCceeEEecCCCCCCCHHHHHHHHHhccccCCCCCCCCC--
Confidence 6778999999999999999999997776666788775 69999998864 45789999999999999998755433
Q ss_pred ccchHHHHHHHHhCceEEEEEEEecCCCcEEEEEEecCCCCC
Q 043403 77 KVCGHYTQVVWRNSVRIGCAKVTCNNNKGTFIGCNYDPPGNF 118 (124)
Q Consensus 77 ~~~~~ftqmiw~~~~~vGC~~~~c~~~~~~~~vC~Y~p~gn~ 118 (124)
..++||+||||+++++||||++.| ..+..++||+|+|+||+
T Consensus 92 ~~~gh~tqmvw~~t~~vGCa~~~~-~~~~~~~vC~Y~p~Gn~ 132 (132)
T cd05382 92 SKTGHFTQVVWKSSTELGVGVAKS-KKGCVYVVARYRPAGNV 132 (132)
T ss_pred CCCCCeEEeEecCCCceeeEEEEc-CCCCEEEEEEEeCCCCC
Confidence 569999999999999999999999 44678999999999986
No 4
>cd05383 SCP_CRISP SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ t
Probab=100.00 E-value=4.2e-33 Score=179.60 Aligned_cols=110 Identities=36% Similarity=0.680 Sum_probs=95.7
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHhhcCCCccccCCC--------CccceEEEecCCCChHHHHHHHHhhhccCCCCCCCC
Q 043403 2 AQVGVGPVTWDDRVASYAQNYANQRKGDCNLVHSGG--------PYGENLAWSSAGLSGTDAVKMWVNEKADYDYNSNTC 73 (124)
Q Consensus 2 ~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~--------~~Gen~~~~~~~~~~~~~v~~W~~~~~~~~~~~~~~ 73 (124)
++.+|.+|+||++||..|+.||+ +|.+.|+.. .+|||++.......+.++|+.||+|..+|+++.+.+
T Consensus 20 ~a~~M~~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~~~~~GeNl~~~~~~~~~~~av~~W~~e~~~y~~~~~~~ 95 (138)
T cd05383 20 TASNMLKMEWNEEAAQNAKKWAN----TCNLTHSPPNGRTIGGITCGENIFMSSYPRSWSDVIQAWYDEYKDFKYGVGAT 95 (138)
T ss_pred CcccCcccEeCHHHHHHHHHHHh----cCCCcCCchhhcccCCCCcceeeeccCCCCCHHHHHHHHHHHHHhCCCCCCCC
Confidence 46899999999999999999999 998877742 479999987765678899999999999999987765
Q ss_pred CCCccchHHHHHHHHhCceEEEEEEEecCC-CcEEEEEEecCC
Q 043403 74 AEGKVCGHYTQVVWRNSVRIGCAKVTCNNN-KGTFIGCNYDPP 115 (124)
Q Consensus 74 ~~~~~~~~ftqmiw~~~~~vGC~~~~c~~~-~~~~~vC~Y~p~ 115 (124)
..+..++|||||||+++++||||++.|..+ ...++||+|+|+
T Consensus 96 ~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~vC~Y~P~ 138 (138)
T cd05383 96 PPGAVVGHYTQIVWYKSYLVGCAVAYCPNSKYKYFYVCHYCPA 138 (138)
T ss_pred CCCCchhhHHHHHHHhccccceEEEECCCCCcCEEEEEecCCC
Confidence 556789999999999999999999999443 268999999995
No 5
>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=2.7e-32 Score=177.01 Aligned_cols=108 Identities=39% Similarity=0.767 Sum_probs=91.8
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHhhcCCCccccCC------------CCccceEEEecC-CCChHHHHHHHHhhhccCCC
Q 043403 2 AQVGVGPVTWDDRVASYAQNYANQRKGDCNLVHSG------------GPYGENLAWSSA-GLSGTDAVKMWVNEKADYDY 68 (124)
Q Consensus 2 ~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~------------~~~Gen~~~~~~-~~~~~~~v~~W~~~~~~~~~ 68 (124)
++.+|++|+||++||..||.||+ +|.+.|+. ..+||||+.... ...+.++|+.||+|..+|++
T Consensus 20 ~a~~m~~l~Wd~~La~~Aq~~a~----~C~~~~~~~~~~~~~~~~~~~~~GeNi~~~~~~~~~~~~av~~W~~e~~~y~~ 95 (144)
T cd05385 20 PAANMRYMTWDAALAKTARAWAK----KCKFKHNIYLGKRYKCHPKFTSVGENIWLGSIYIFSPKNAVTSWYNEGKFYDF 95 (144)
T ss_pred CcccCcccccCHHHHHHHHHHHh----cCCCCCCchhhcccccccccCcccceeeecccCCCCHHHHHHHHHHHHHhCCC
Confidence 46699999999999999999999 88877653 258999987663 45788999999999999998
Q ss_pred CCCCCCCCccchHHHHHHHHhCceEEEEEEEecCCC----cEEEEEEecCC
Q 043403 69 NSNTCAEGKVCGHYTQVVWRNSVRIGCAKVTCNNNK----GTFIGCNYDPP 115 (124)
Q Consensus 69 ~~~~~~~~~~~~~ftqmiw~~~~~vGC~~~~c~~~~----~~~~vC~Y~p~ 115 (124)
..+.+. ..++|||||||+++++||||++.|..++ ..++||+|+|+
T Consensus 96 ~~~~~~--~~~ghftqmvw~~t~~vGCa~~~c~~~~~~~~~~~vVC~Y~p~ 144 (144)
T cd05385 96 DTNSCS--RVCGHYTQVVWATSYKVGCAVAFCPNLGGIPNAAIFVCNYAPA 144 (144)
T ss_pred CCCCCC--CcccCHHHHHHhhccccceEEEECCCCCCccccEEEEEeCCCC
Confidence 876654 4699999999999999999999995433 37899999994
No 6
>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function.
Probab=99.98 E-value=6.7e-32 Score=174.76 Aligned_cols=110 Identities=46% Similarity=0.864 Sum_probs=94.6
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHhhcCCCccccCCC-CccceEEEecC-----CCChHHHHHHHHhhhccCCCCCCCCCC
Q 043403 2 AQVGVGPVTWDDRVASYAQNYANQRKGDCNLVHSGG-PYGENLAWSSA-----GLSGTDAVKMWVNEKADYDYNSNTCAE 75 (124)
Q Consensus 2 ~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~-~~Gen~~~~~~-----~~~~~~~v~~W~~~~~~~~~~~~~~~~ 75 (124)
++.+|++|+||++||..|+.||+ +|...|+.. .+|||+++..+ ...+..+|+.|++|...|++.++.+..
T Consensus 26 ~a~~m~~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~GeNi~~~~~~~~~~~~~~~~av~~W~~e~~~y~~~~~~~~~ 101 (144)
T smart00198 26 AASNMLKLTWDCELASSAQNWAN----QCPFGHSTPRGYGENLAWWSSSTDLPITYASAAVQLWYDEFQDYGYSSNTCKD 101 (144)
T ss_pred cccccccccCCHHHHHHHHHHHH----hCCCcCCCcCCcCcceEEecccCcccchhHHHHHHHHHHHHHHcCCCCCcccc
Confidence 45679999999999999999999 898888765 79999998763 346788999999999999998876654
Q ss_pred -CccchHHHHHHHHhCceEEEEEEEecCCC--cEEEEEEecCC
Q 043403 76 -GKVCGHYTQVVWRNSVRIGCAKVTCNNNK--GTFIGCNYDPP 115 (124)
Q Consensus 76 -~~~~~~ftqmiw~~~~~vGC~~~~c~~~~--~~~~vC~Y~p~ 115 (124)
+..++|||||||+++++||||++.|..++ ..++||+|+|+
T Consensus 102 ~~~~~~hftqmvw~~s~~vGCa~~~c~~~~~~~~~~vC~Y~P~ 144 (144)
T smart00198 102 TNGKIGHYTQVVWAKTYKVGCGVSNCPDGTKKKTVVVCNYDPP 144 (144)
T ss_pred CccchhHHHHHHHHhcCCcceEEEECCCCCcceEEEEEecCCC
Confidence 56799999999999999999999994333 27999999994
No 7
>KOG3017 consensus Defense-related protein containing SCP domain [Function unknown]
Probab=99.97 E-value=4.5e-32 Score=187.22 Aligned_cols=117 Identities=49% Similarity=0.963 Sum_probs=100.1
Q ss_pred CCCCCCcccHHHHHHHHHHHHhhcCCCccccC------CCCccceEEEecCC-------CChHHHHHHHHhhhccCCCCC
Q 043403 4 VGVGPVTWDDRVASYAQNYANQRKGDCNLVHS------GGPYGENLAWSSAG-------LSGTDAVKMWVNEKADYDYNS 70 (124)
Q Consensus 4 ~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~------~~~~Gen~~~~~~~-------~~~~~~v~~W~~~~~~~~~~~ 70 (124)
.+|.+|+||++||..||.||+ +|.+.|. ...+|||+++..+. .....+++.|+.|...|++..
T Consensus 61 s~m~~m~Wd~~La~~Aq~~a~----~c~~~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~~~~~~a~~~w~~e~~~~~~~~ 136 (225)
T KOG3017|consen 61 SNMMKLKWDDELAALAQNWAN----TCPFGHDKCVHTSFGPYGENLAWGWSSNPPLSLDTSGALAVEAWESEFQEYDWSS 136 (225)
T ss_pred HhCccccCCHHHHHHHHHHHh----hCCcccCccccccCCCCcccceeeccCCCCccccccHHHHHHHHHHHHHHccCcc
Confidence 459999999999999999999 8877665 34679999988753 467789999999999999999
Q ss_pred CCCCC---CccchHHHHHHHHhCceEEEEEEEecCCC----cEEEEEEecCCCCCCC-CCCC
Q 043403 71 NTCAE---GKVCGHYTQVVWRNSVRIGCAKVTCNNNK----GTFIGCNYDPPGNFVG-EKPY 124 (124)
Q Consensus 71 ~~~~~---~~~~~~ftqmiw~~~~~vGC~~~~c~~~~----~~~~vC~Y~p~gn~~~-~~~Y 124 (124)
+.+.. +..++|||||||+++++||||++.|.... ..++||+|+|+||..+ +.+|
T Consensus 137 ~~~~~~~~~~~~gHyTQ~vw~~s~~vGCgv~~c~~~~~~~~~~~~vC~Y~p~g~~~~~~~~y 198 (225)
T KOG3017|consen 137 NTCSSADFGEGIGHYTQMVWAKSTKVGCGVVRCGNGSNGYNTVAVVCNYDPPGNNINGEIPY 198 (225)
T ss_pred cccCcccCCCcceEEEEEEEeCCceeceeeccCCCCCCCcceEEEEEEeecCCCCcCCCCcC
Confidence 88875 67899999999999999999999996554 7899999999955444 5665
No 8
>cd05559 SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.97 E-value=5.6e-31 Score=169.34 Aligned_cols=108 Identities=44% Similarity=0.851 Sum_probs=94.0
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHhhcCCCccccCCC----CccceEEEecC-CCChHHHHHHHHhhhccCCCCCCCCCCC
Q 043403 2 AQVGVGPVTWDDRVASYAQNYANQRKGDCNLVHSGG----PYGENLAWSSA-GLSGTDAVKMWVNEKADYDYNSNTCAEG 76 (124)
Q Consensus 2 ~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~----~~Gen~~~~~~-~~~~~~~v~~W~~~~~~~~~~~~~~~~~ 76 (124)
++.+|.+|+||++||..|+.||+ +|.+.|+.. .+|||++...+ ...+.++|+.|++|..+|+++.+.+..+
T Consensus 18 ~a~~m~~L~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~v~~W~~e~~~y~~~~~~~~~~ 93 (136)
T cd05559 18 PAANMLKMTWDEELAALAEAYAR----KCIWDHNPDRGHLRVGENLFISTGPPFDATKAVEDWNNEKLDYNYNTNTCAPN 93 (136)
T ss_pred ccccCcccccCHHHHHHHHHHHH----hccccCCCcccCCCceeeeeecCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 36799999999999999999999 898887653 69999987764 4578999999999999999988877667
Q ss_pred ccchHHHHHHHHhCceEEEEEEEecCC------CcEEEEEEec
Q 043403 77 KVCGHYTQVVWRNSVRIGCAKVTCNNN------KGTFIGCNYD 113 (124)
Q Consensus 77 ~~~~~ftqmiw~~~~~vGC~~~~c~~~------~~~~~vC~Y~ 113 (124)
..++|||||||+++++||||++.|... ...++||+|+
T Consensus 94 ~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~~~~~~vC~Y~ 136 (136)
T cd05559 94 KMCGHYTQVVWANTFKIGCGSYFCETLEVLRWENATLLVCNYG 136 (136)
T ss_pred CcccchHHHHHhccCccceEEEECCCCCCCCcccCEEEEecCC
Confidence 789999999999999999999999532 2478999995
No 9
>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as
Probab=99.97 E-value=1.2e-30 Score=164.77 Aligned_cols=106 Identities=44% Similarity=0.847 Sum_probs=93.3
Q ss_pred CCCC-CCCCCcccHHHHHHHHHHHHhhcCCCccccCCC----CccceEEEecCCCChHHHHHHHHhhhccCCCCCCCCCC
Q 043403 1 RAQV-GVGPVTWDDRVASYAQNYANQRKGDCNLVHSGG----PYGENLAWSSAGLSGTDAVKMWVNEKADYDYNSNTCAE 75 (124)
Q Consensus 1 R~~~-~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~----~~Gen~~~~~~~~~~~~~v~~W~~~~~~~~~~~~~~~~ 75 (124)
|..+ +|++|+||++|+..|+.||+ +|.+.|+.. .+|||++...+..++..+|+.|++|...|++.++..
T Consensus 12 R~~~a~~~~L~wd~~La~~A~~~a~----~c~~~h~~~~~~~~~geNi~~~~~~~~~~~~v~~W~~e~~~y~~~~~~~-- 85 (122)
T cd00168 12 RAKVNGMLPMSWDAELAKTAQNYAN----RCIFKHSGEDGRGFVGENLAAGSYDMTGPAAVQAWYNEIKNYNFGQPGF-- 85 (122)
T ss_pred HHhcCCCCCCccCHHHHHHHHHHHh----hccccCCCcccCCCCCceeEEecCCCCHHHHHHHHHHHHHhCCCCCCCC--
Confidence 6677 99999999999999999999 898888764 699999988765688999999999999999885543
Q ss_pred CccchHHHHHHHHhCceEEEEEEEecCCCcEEEEEEec
Q 043403 76 GKVCGHYTQVVWRNSVRIGCAKVTCNNNKGTFIGCNYD 113 (124)
Q Consensus 76 ~~~~~~ftqmiw~~~~~vGC~~~~c~~~~~~~~vC~Y~ 113 (124)
+..++||+||||+++++||||++.| ..+..++||+|+
T Consensus 86 ~~~~~h~~qmvw~~s~~vGca~~~~-~~~~~~~vC~Y~ 122 (122)
T cd00168 86 SSGTGHYTQVVWKNTTKIGCGVAFC-GSNSYYVVCNYG 122 (122)
T ss_pred CCCccchhhhhcccCCeeeeEEEEc-CCCCEEEEEeCc
Confidence 3568999999999999999999999 446789999995
No 10
>cd05380 SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.96 E-value=2.4e-29 Score=162.29 Aligned_cols=108 Identities=38% Similarity=0.694 Sum_probs=92.1
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHhhcCCCccccCCC----CccceEEEecCC-----CChHHHHHHHHhhhccCCCCCC-
Q 043403 2 AQVGVGPVTWDDRVASYAQNYANQRKGDCNLVHSGG----PYGENLAWSSAG-----LSGTDAVKMWVNEKADYDYNSN- 71 (124)
Q Consensus 2 ~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~----~~Gen~~~~~~~-----~~~~~~v~~W~~~~~~~~~~~~- 71 (124)
++.+|++|+||++||..|+.||+ +|...|+.. .+|||++..... ..+.++|+.|++|...|++.+.
T Consensus 25 ~a~~m~~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~~~~~v~~W~~e~~~~~~~~~~ 100 (144)
T cd05380 25 PASNMPKLKWDDELAALAQNWAK----TCVFEHSPCRNTGGVGQNLAAGSSTGSTVEELAEDAVNAWYNELKDYGFGSNP 100 (144)
T ss_pred chhcCCcceeCHHHHHHHHHHHh----cCCCcCCcccCCCCCCcEEEEeccCCCCHHHHHHHHHHHHHHHHHHcCCCcCc
Confidence 35699999999999999999999 998777764 699999988742 3578899999999999998875
Q ss_pred CCCCCccchHHHHHHHHhCceEEEEEEEecCC--CcEEEEEEec
Q 043403 72 TCAEGKVCGHYTQVVWRNSVRIGCAKVTCNNN--KGTFIGCNYD 113 (124)
Q Consensus 72 ~~~~~~~~~~ftqmiw~~~~~vGC~~~~c~~~--~~~~~vC~Y~ 113 (124)
.......++||+||||+++++||||++.|... ...++||+|+
T Consensus 101 ~~~~~~~~~hftq~vw~~t~~vGCa~~~~~~~~~~~~~~vC~Y~ 144 (144)
T cd05380 101 TNNFNSGIGHFTQMVWAKTTKVGCAVARCGKDGGNKTVVVCNYS 144 (144)
T ss_pred ccccccchhHHHHHHHHhcCccceEEEEeecCCceEEEEEecCC
Confidence 33345779999999999999999999999543 4789999995
No 11
>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors. This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....
Probab=99.82 E-value=1e-19 Score=112.36 Aligned_cols=108 Identities=36% Similarity=0.589 Sum_probs=74.1
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHHhhcCCCccccCC-CCccceEEEecCCCChHH----HHHHHHhhhccCCCCCCC--C
Q 043403 1 RAQVGVGPVTWDDRVASYAQNYANQRKGDCNLVHSG-GPYGENLAWSSAGLSGTD----AVKMWVNEKADYDYNSNT--C 73 (124)
Q Consensus 1 R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~-~~~Gen~~~~~~~~~~~~----~v~~W~~~~~~~~~~~~~--~ 73 (124)
.++++|++|+||++|+..|+.+|+ .|...+.. ...|+++........... .+..|+.+...+...... .
T Consensus 9 ~~~~~~~~L~~d~~L~~~A~~~a~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (124)
T PF00188_consen 9 SAANGLPPLKWDPELAKAAQAHAK----YCANSNSLSHDSGENGSQSSRFGSYSDAQVTAVENWYSESKNYNFQNQSIFN 84 (124)
T ss_dssp HBSSTBB--EE-HHHHHHHHHHHT----TTCSSEETTEESEEEEEEESSTTSHHHHHHHHHHHHHGGGGGEETTCSTEES
T ss_pred HHhCCCCCCeeCHHHHHHHHHhhH----HhhhhcccccccCCCCccccccccccchhhHHHHHHHhcccccccccchhhh
Confidence 067888889999999999999999 66553322 356778776663222222 289999999988776211 1
Q ss_pred CCCccchHHHHHHHHhCceEEEEEEEecCCCc-EEEEEEe
Q 043403 74 AEGKVCGHYTQVVWRNSVRIGCAKVTCNNNKG-TFIGCNY 112 (124)
Q Consensus 74 ~~~~~~~~ftqmiw~~~~~vGC~~~~c~~~~~-~~~vC~Y 112 (124)
.-...++||++|+|.++++||||++.|...+. +++||+|
T Consensus 85 ~~~~~~~h~~~ll~~~~~~iGca~~~~~~~~~~~~~vc~y 124 (124)
T PF00188_consen 85 SWMNSPGHFTNLLWPNTTRIGCAVANCPNGKNNYYWVCNY 124 (124)
T ss_dssp STTSTCHHHHHHT-TT--EEEEEEEEETTSSSEEEEEEEE
T ss_pred ccCCchhhhhhhhcCCCCEEEEEEEEeCCCCeeEEEEEEC
Confidence 11355899999999999999999999943333 9999998
No 12
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.
Probab=99.70 E-value=9e-17 Score=102.18 Aligned_cols=93 Identities=22% Similarity=0.352 Sum_probs=78.7
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHHhhcCCCccccCCC-----------------CccceEEEecCCCChHHHHHHHHhhh
Q 043403 1 RAQVGVGPVTWDDRVASYAQNYANQRKGDCNLVHSGG-----------------PYGENLAWSSAGLSGTDAVKMWVNEK 63 (124)
Q Consensus 1 R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~-----------------~~Gen~~~~~~~~~~~~~v~~W~~~~ 63 (124)
|+.+++++|+||..|++.|+.||+.|+..+.+.|..+ .+||||+.+. .++..+++.|++.
T Consensus 16 R~~~Gl~pL~~~~~L~~~A~~hA~~ma~~~~~~H~~~~~~~~~~r~~~~g~~~~~~gENi~~g~--~~~~~~v~~W~~S- 92 (127)
T TIGR02909 16 RAKNGLKPLKADPELSKVARLKSEDMRDKNYFSHTSPTYGSPFDMMKKFGISYRMAGENIAYGN--STVEAVHNAWMNS- 92 (127)
T ss_pred HHHcCCCCCccCHHHHHHHHHHHHHHHhCCcccccCCCCCCHHHHHHHcCCCcccceeeeeccC--CCHHHHHHHHHcC-
Confidence 7889999999999999999999999998888877642 3589998654 4778999999765
Q ss_pred ccCCCCCCCCCCCccchHHHHHHHHhCceEEEEEEEecCCCcEEEEEEe
Q 043403 64 ADYDYNSNTCAEGKVCGHYTQVVWRNSVRIGCAKVTCNNNKGTFIGCNY 112 (124)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~ftqmiw~~~~~vGC~~~~c~~~~~~~~vC~Y 112 (124)
.+|+++|+|++.+++|||++.+ .++..++|-.|
T Consensus 93 ---------------~gH~~nil~~~~~~~Gvg~~~~-~~g~~y~~q~F 125 (127)
T TIGR02909 93 ---------------PGHRANILNPNYTEIGVGYVEG-GSGGIYWTQMF 125 (127)
T ss_pred ---------------HhHHHHHcCCCcCeEeEEEEeC-CCCCeEEEEEe
Confidence 6899999999999999999987 45666777665
No 13
>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.
Probab=99.53 E-value=5.2e-14 Score=87.95 Aligned_cols=93 Identities=28% Similarity=0.469 Sum_probs=76.0
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHHhhcCCCccccCCC-----------------CccceEEEecCCCChHHHHHHHHhhh
Q 043403 1 RAQVGVGPVTWDDRVASYAQNYANQRKGDCNLVHSGG-----------------PYGENLAWSSAGLSGTDAVKMWVNEK 63 (124)
Q Consensus 1 R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~-----------------~~Gen~~~~~~~~~~~~~v~~W~~~~ 63 (124)
|..+++++|+||.+|+..|+.+|++++....+.|... .+|||++.... .+.++++.|+++
T Consensus 12 R~~~gl~pl~~~~~l~~~A~~~a~~~~~~~~~~h~~~~~~~~~~~~~~~g~~~~~~~eni~~~~~--~~~~~~~~w~~~- 88 (122)
T cd05379 12 RAQNGLPPLTWDPALAAAAQAHARDMAANGYFSHTGPDGSSPFDRARAAGYPYSSAGENIAYGYS--TAEAAVDGWMNS- 88 (122)
T ss_pred HHHcCCCCCccChHHHHHHHHHHHHHHhcCccCCcCCCCCCHHHHHHHcCCCcCccchhhcccCC--CHHHHHHHHhCC-
Confidence 6788999999999999999999999986655666532 13888876553 788999999765
Q ss_pred ccCCCCCCCCCCCccchHHHHHHHHhCceEEEEEEEecCCCcEEEEEEe
Q 043403 64 ADYDYNSNTCAEGKVCGHYTQVVWRNSVRIGCAKVTCNNNKGTFIGCNY 112 (124)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~ftqmiw~~~~~vGC~~~~c~~~~~~~~vC~Y 112 (124)
.+|+.+|++++.+++|||+... .++..++|..|
T Consensus 89 ---------------~~H~~~ll~~~~~~~Gvg~~~~-~~~~~y~~~~f 121 (122)
T cd05379 89 ---------------PGHRANILNPDYTEVGVGVAYG-GDGGYYWVQVF 121 (122)
T ss_pred ---------------HhHHHHHcCCCcceeeEEEEeC-CCCCeEEEEec
Confidence 6899999999999999999997 44667777665
No 14
>COG2340 Uncharacterized protein with SCP/PR1 domains [Function unknown]
Probab=98.93 E-value=2.6e-09 Score=73.17 Aligned_cols=82 Identities=28% Similarity=0.442 Sum_probs=70.0
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHHhhcCCCccccCCC-----------------CccceEEEecCCCCh-HHHHHHHHhh
Q 043403 1 RAQVGVGPVTWDDRVASYAQNYANQRKGDCNLVHSGG-----------------PYGENLAWSSAGLSG-TDAVKMWVNE 62 (124)
Q Consensus 1 R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~-----------------~~Gen~~~~~~~~~~-~~~v~~W~~~ 62 (124)
|+.+++++|.||.+|+..|+.+++.|+....+.|..+ .+||||+.+.. +. ..+|+.|.+.
T Consensus 92 R~~~~l~~L~~n~~L~~~A~~~a~~m~~~g~~sH~~~~g~~~~~r~~~~g~~~~~agENIa~g~~--~~~~~~v~~Wl~S 169 (207)
T COG2340 92 RAKHGLPPLAWNATLAKAARNHARDMAKNGYFSHTSPTGETPADRLKKYGISGATAGENIAYGSN--DPPEAAVDGWLNS 169 (207)
T ss_pred HhhcCCCCcccCHHHHHHHHHHHHHHHHcCCccccCCCCCCHHHHHHhCCcccccccceeecCCC--CchHHHHHHhcCC
Confidence 7789999999999999999999999998888888642 48999998763 33 7899999665
Q ss_pred hccCCCCCCCCCCCccchHHHHHHHHhCceEEEEEEEe
Q 043403 63 KADYDYNSNTCAEGKVCGHYTQVVWRNSVRIGCAKVTC 100 (124)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~ftqmiw~~~~~vGC~~~~c 100 (124)
.+|-.+|+-.+-+.+|.|+..-
T Consensus 170 ----------------~gH~~nll~~~~~~~Gv~~~~~ 191 (207)
T COG2340 170 ----------------PGHRKNLLNPAYTEIGVGVAYD 191 (207)
T ss_pred ----------------hhhhhhccCcchhheeEEEEec
Confidence 5788999999999999999873
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=66.69 E-value=3.7 Score=29.98 Aligned_cols=34 Identities=24% Similarity=0.534 Sum_probs=23.2
Q ss_pred HHHHHHhCceEEEEEEEecCCCcEEEEEEecCCCCC
Q 043403 83 TQVVWRNSVRIGCAKVTCNNNKGTFIGCNYDPPGNF 118 (124)
Q Consensus 83 tqmiw~~~~~vGC~~~~c~~~~~~~~vC~Y~p~gn~ 118 (124)
..+||+..|.---.... -...+++.|.|+|.||.
T Consensus 78 klIvWDs~TtnK~haip--l~s~WVMtCA~sPSg~~ 111 (343)
T KOG0286|consen 78 KLIVWDSFTTNKVHAIP--LPSSWVMTCAYSPSGNF 111 (343)
T ss_pred eEEEEEcccccceeEEe--cCceeEEEEEECCCCCe
Confidence 45788876655443333 23478999999998875
No 16
>PF04648 MF_alpha: Yeast mating factor alpha hormone; InterPro: IPR006742 This repeated sequence,WHWLQLKPGQPMY, characterises the mating factor alpha-1 or alpha-1 mating pheromone [contains: Mating factor alpha].The hormone is excreted into the culture medium by haploid cells of the alpha mating type and acts on cells of the opposite mating type (type A) by binding to a cognate G-protein coupled receptor which is coupled to a downstream signal transduction pathway. It inhibits DNA synthesis in type A cells synchronising them with type alpha, and so mediates the conjugation process.; GO: 0000772 mating pheromone activity, 0019953 sexual reproduction, 0005576 extracellular region
Probab=41.26 E-value=15 Score=13.67 Aligned_cols=6 Identities=33% Similarity=0.628 Sum_probs=3.6
Q ss_pred CCCCCC
Q 043403 119 VGEKPY 124 (124)
Q Consensus 119 ~~~~~Y 124 (124)
+|+|+|
T Consensus 8 ~GqP~Y 13 (13)
T PF04648_consen 8 PGQPMY 13 (13)
T ss_pred CCCcCC
Confidence 366666
No 17
>PF13983 YsaB: YsaB-like lipoprotein
Probab=34.55 E-value=29 Score=19.62 Aligned_cols=14 Identities=29% Similarity=0.653 Sum_probs=11.2
Q ss_pred cEEEEEEecCCCCC
Q 043403 105 GTFIGCNYDPPGNF 118 (124)
Q Consensus 105 ~~~~vC~Y~p~gn~ 118 (124)
..-+||-|+|.|-+
T Consensus 58 ~E~FvCSFD~dGqF 71 (77)
T PF13983_consen 58 KEGFVCSFDADGQF 71 (77)
T ss_pred ccceEEeECCCCcE
Confidence 56799999997754
No 18
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=34.13 E-value=47 Score=17.90 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=13.8
Q ss_pred CcccHHHHHHHHHHHH
Q 043403 9 VTWDDRVASYAQNYAN 24 (124)
Q Consensus 9 L~Wd~~La~~A~~~a~ 24 (124)
|.|....++.|+..|.
T Consensus 1 l~Wt~~Aa~eAeavAa 16 (56)
T PF04863_consen 1 LSWTLRAAEEAEAVAA 16 (56)
T ss_dssp -STTHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHhhc
Confidence 6899999999999886
No 19
>PF09007 EBP50_C-term: EBP50, C-terminal; InterPro: IPR015098 This C-terminal domain allows interaction of EBP50 with FERM (four-point one ERM) domains, resulting in the activation of Ezrin-radixin-moesin (ERM), with subsequent cytoskeletal modulation and cellular growth control []. ; PDB: 2D10_G 2KRG_A 2D11_G.
Probab=29.29 E-value=28 Score=17.45 Aligned_cols=16 Identities=13% Similarity=0.422 Sum_probs=5.8
Q ss_pred CCCCCCCCCcccHHHH
Q 043403 1 RAQVGVGPVTWDDRVA 16 (124)
Q Consensus 1 R~~~~m~~L~Wd~~La 16 (124)
|...+.++|.|+..-+
T Consensus 21 R~~KrAP~MDW~Kk~E 36 (41)
T PF09007_consen 21 RSKKRAPQMDWSKKNE 36 (41)
T ss_dssp ---S--S---HHHHHH
T ss_pred HHhccCCCcchHHHHH
Confidence 5677889999987544
No 20
>COG1318 Predicted transcriptional regulators [Transcription]
Probab=28.72 E-value=52 Score=22.18 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=18.0
Q ss_pred CCCCCcccHHHHHHHHHHHHh
Q 043403 5 GVGPVTWDDRVASYAQNYANQ 25 (124)
Q Consensus 5 ~m~~L~Wd~~La~~A~~~a~~ 25 (124)
.-.+|.|.+.||..|-..|+.
T Consensus 38 ~~~~lTWvdSLavAAga~are 58 (182)
T COG1318 38 PYERLTWVDSLAVAAGALARE 58 (182)
T ss_pred cccccchhhHHHHHHHHHHHH
Confidence 356899999999999999883
No 21
>PF11903 DUF3423: Protein of unknown function (DUF3423); InterPro: IPR021831 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 73 to 118 amino acids in length.
Probab=28.16 E-value=71 Score=18.16 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=17.2
Q ss_pred CCCCcccHHHHHHHHHHHH
Q 043403 6 VGPVTWDDRVASYAQNYAN 24 (124)
Q Consensus 6 m~~L~Wd~~La~~A~~~a~ 24 (124)
|.+++-|++|-..|+.+++
T Consensus 1 ~~~vri~~~L~~~ar~~a~ 19 (72)
T PF11903_consen 1 MGSVRISDELHDQARAEAA 19 (72)
T ss_pred CCCeeeCHHHHHHHHHHHH
Confidence 6788899999999999998
No 22
>PHA00684 hypothetical protein
Probab=26.83 E-value=21 Score=22.64 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=9.3
Q ss_pred CceEEEEEEEe
Q 043403 90 SVRIGCAKVTC 100 (124)
Q Consensus 90 ~~~vGC~~~~c 100 (124)
.|.||||++-.
T Consensus 79 VT~IGCGiAG~ 89 (128)
T PHA00684 79 VTRVGCGLAGH 89 (128)
T ss_pred eeeeccccccC
Confidence 68899999865
No 23
>PRK10721 hypothetical protein; Provisional
Probab=26.60 E-value=1e+02 Score=17.30 Aligned_cols=33 Identities=18% Similarity=0.432 Sum_probs=22.3
Q ss_pred HHHHHHhhhccCCCCCCCCCCCccchHHHHHHHHh
Q 043403 55 AVKMWVNEKADYDYNSNTCAEGKVCGHYTQVVWRN 89 (124)
Q Consensus 55 ~v~~W~~~~~~~~~~~~~~~~~~~~~~ftqmiw~~ 89 (124)
-+..|.-+...++-..+.|+ .++-.-.||.|-.
T Consensus 31 DL~~wV~~L~~FdDdp~~~~--EkiLEAIQ~aWie 63 (66)
T PRK10721 31 DMHQWICELEDFDDDPQASN--EKILEAILLVWLD 63 (66)
T ss_pred HHHHHHHhCcCcCCCccccc--HHHHHHHHHHHHH
Confidence 35678777777655545554 6677788988853
No 24
>PF11952 DUF3469: Protein of unknown function (DUF3469); InterPro: IPR021859 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 108 to 439 amino acids in length.
Probab=25.79 E-value=15 Score=21.73 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=13.4
Q ss_pred HHHHHHhCceEEEEEE
Q 043403 83 TQVVWRNSVRIGCAKV 98 (124)
Q Consensus 83 tqmiw~~~~~vGC~~~ 98 (124)
-.++|.+...+||.+.
T Consensus 39 Ls~v~~N~~fLGC~Yp 54 (87)
T PF11952_consen 39 LSQVWANMEFLGCRYP 54 (87)
T ss_pred HHHHHHhHHHHhcCCC
Confidence 4679999999999764
No 25
>PF03290 Peptidase_C57: Vaccinia virus I7 processing peptidase; InterPro: IPR004970 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This is a group of cysteine peptidases which constitute MEROPS peptidase family C57 (clan CE). The type example is vaccinia virus I7 processing peptidase (vaccinia virus); protein I7 is expressed in the late phase of infection [].
Probab=23.33 E-value=43 Score=25.51 Aligned_cols=17 Identities=35% Similarity=0.331 Sum_probs=14.8
Q ss_pred cEEEEEEecCCCCCCCC
Q 043403 105 GTFIGCNYDPPGNFVGE 121 (124)
Q Consensus 105 ~~~~vC~Y~p~gn~~~~ 121 (124)
..-+||.|+..||+|++
T Consensus 252 ~~~~v~FydSgG~~P~e 268 (423)
T PF03290_consen 252 EKKIVYFYDSGGNIPEE 268 (423)
T ss_pred cccEEEEEcCCCCCHHH
Confidence 56799999999999875
No 26
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=20.91 E-value=89 Score=18.18 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=14.4
Q ss_pred CcccHHHHHHHHHHHH
Q 043403 9 VTWDDRVASYAQNYAN 24 (124)
Q Consensus 9 L~Wd~~La~~A~~~a~ 24 (124)
|+||+++.+.|...++
T Consensus 1 m~~~~~~m~~a~~~a~ 16 (102)
T PF00383_consen 1 MEWDEEFMRIAIELAK 16 (102)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 6899999999999998
Done!