BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043404
(393 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 340 bits (871), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 191/421 (45%), Positives = 257/421 (61%), Gaps = 34/421 (8%)
Query: 2 ETYKRRAEELKGKVKTAIKD-VTEPLDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXK 60
E YK +A++L+ +V+ I + E L LELIDN+QRLGL Y FE +
Sbjct: 40 EVYKDKAKKLEAEVRREINNEKAEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSGG 99
Query: 61 DYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFI---CDDFKGILSLHEASY 117
K +L+AT+L FRLLRQHG+ VSQE FSGFKD F+ +D K ILSL+EAS+
Sbjct: 100 FDGVTKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASF 159
Query: 118 YSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWF 177
+LEGE+I++EA F HLKE+ KE +AEQ ALELPLH + LEA W
Sbjct: 160 LALEGENILDEARVFAISHLKELSEEKIGKE----LAEQVNHALELPLHRRTQRLEAVWS 215
Query: 178 IHVYEKREDKNHLLLELAKLEFNTLQAIYQEELKDIS----------------------- 214
I Y K+ED N +LLELA L++N +Q++YQ +L++ S
Sbjct: 216 IEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESF 275
Query: 215 --GMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKH 272
+G+AFEPQ++ CR + + +T+IDDIYDVYGTLDELELFTDAVERWD+N A+
Sbjct: 276 YWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVN-AIND 334
Query: 273 LPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPK 332
LP YMK+CFLALYN +NE AY LK + ++L + AW L A+L EAKW ++K TP
Sbjct: 335 LPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPT 394
Query: 333 LEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTS 392
++Y N S +GPL + +Y + I K+E+E L+ DI+ S IFRL +DL ++
Sbjct: 395 FDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASA 454
Query: 393 S 393
S
Sbjct: 455 S 455
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 302 bits (773), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 170/421 (40%), Positives = 255/421 (60%), Gaps = 36/421 (8%)
Query: 1 DETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXK 60
+E + RA + +VK +++ + + +LELID+L+RLG++ HFE E
Sbjct: 59 EEKHLMRAAGMIDQVKMMLQEEVDSIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNN 118
Query: 61 DYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDK-VGF---ICDDFKGILSLHEAS 116
+ + R +LY+T+L FRLLRQ+ + VSQEVF FK+ K F + DD +G+L L+EAS
Sbjct: 119 EIDER--DLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEAS 176
Query: 117 YYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARW 176
+ S +GE + A F +K L++ ++ ++D+ + +RALELP HW+V M AR
Sbjct: 177 FLSAQGEETLRLARDFATKFLQKRVLV----DKDINLLSSIERALELPTHWRVQMPNARS 232
Query: 177 FIHVYEKREDKNHLLLELAKLEFNTLQAIYQEELKDIS---------------------- 214
FI Y++R D N +LELAKL+FN +QA +Q+ELK+ S
Sbjct: 233 FIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVEC 292
Query: 215 ---GMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALK 271
G+ Q Y R +LT AL+T IDD++D+YGTL+EL+LFT A++RWDI ++K
Sbjct: 293 YYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIE-SMK 351
Query: 272 HLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTP 331
LP YM++C+LAL+NFVNE AY L+ + FD ++ W+GLI++YL+EAKWY+ + P
Sbjct: 352 QLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKP 411
Query: 332 KLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGT 391
LEEY++N +SI G I++ + T+ I ++ E + DIV S I RL DD+GT
Sbjct: 412 SLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGT 471
Query: 392 S 392
S
Sbjct: 472 S 472
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 287 bits (734), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 171/418 (40%), Positives = 249/418 (59%), Gaps = 36/418 (8%)
Query: 7 RAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXKDYN--W 64
RA EL VK ++ T+ + QLELID+LQR+GL+ HF+ E Y +
Sbjct: 32 RASELVTLVKMELEKETDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPF 91
Query: 65 RKE--NLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGF---ICDDFKGILSLHEASYYS 119
KE +LY+TSL FRLLR+HG+ V+QEVF FK+++ F + DD +G+L L+EAS+
Sbjct: 92 PKEERDLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLL 151
Query: 120 LEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFIH 179
EGE+ +E A +F +K L+E + N D + + +L++PLHW++ A +I
Sbjct: 152 TEGETTLESAREFATKFLEEKV---NEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIE 208
Query: 180 VYEKREDKNHLLLELAKLEFNTLQAIYQEELKD-------------------------IS 214
Y KR D N ++LELA L+ N +QA +QEELK+
Sbjct: 209 WYRKRPDMNPVVLELAILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFW 268
Query: 215 GMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLP 274
GI Q A R ++ ALITVIDDIYDVYGTL+ELE FTD + RWDIN ++ LP
Sbjct: 269 NTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDIN-SIDQLP 327
Query: 275 GYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLE 334
YM++CFLAL NFV++ +Y V+K++ +++ ++ +W+ L Y+VEA+W++ + P LE
Sbjct: 328 DYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLE 387
Query: 335 EYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTS 392
EYLEN SI+GP ++T + T+ K+ ++ L D+V WSS + RL DDLGTS
Sbjct: 388 EYLENSWQSISGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTS 445
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 280 bits (715), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 171/427 (40%), Positives = 253/427 (59%), Gaps = 39/427 (9%)
Query: 1 DETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXK 60
+E + R EL +V+ +K+ EP+ QLELI +L+ LGL+ F+ E K
Sbjct: 30 EERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHK 89
Query: 61 DYN---WRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDK-VGF---ICDDFKGILSLH 113
++ K +LY T+L FRLLRQHG+ +SQ+VF+ FK++K + F + D KG+L L+
Sbjct: 90 CFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLY 149
Query: 114 EASYYSLEGESIMEEAWQFTSKHL-KEMMITSNSKEEDVFVAEQAKRALELPLHWKVPML 172
EAS+ +GE +E A +F +K L K++ N +E++ + + +L+LPLHW++ +
Sbjct: 150 EASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDENLLL--WIRHSLDLPLHWRIQSV 207
Query: 173 EARWFIHVYEKREDKNHLLLELAKLEFNTLQAIYQEELKDIS------------------ 214
EARWFI Y +R D N L+ ELAKL FN +QA +Q+ELKD+S
Sbjct: 208 EARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDR 267
Query: 215 -------GMGIAFEP-QFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDI 266
+G+ FEP Q Y R++ I L TVIDDIYDVYGTLDELELFTD +RWD
Sbjct: 268 LVESFFWAVGM-FEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDT 326
Query: 267 NYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYH 326
++ LP YM++C+ ++N++++ AY +LK+ F L ++ + + L++AY EAKWYH
Sbjct: 327 E-SITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYH 385
Query: 327 SKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKE-LEFLESNPDIVHWSSKIFRL 385
S YTP L+EYL +S+ P II+ +Y + N ++ L DI+ + I RL
Sbjct: 386 SGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRL 445
Query: 386 QDDLGTS 392
DDLGTS
Sbjct: 446 PDDLGTS 452
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 138/419 (32%), Positives = 222/419 (52%), Gaps = 38/419 (9%)
Query: 1 DETYKRRAEELKGKV-KTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXX 59
D ++R ++LK +V K + + +L ID++QRLG++YHF E
Sbjct: 45 DAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNN 104
Query: 60 KDYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGF---ICDDFKGILSLHEAS 116
D + +LY TS+ FRLLR+HGY VS +VF+ FKD++ F + D +G+L L++AS
Sbjct: 105 ND---AENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQAS 161
Query: 117 YYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARW 176
Y + GE I++EA FT+ HL + + D ++E+ AL+ + +P +EAR
Sbjct: 162 YLRVHGEDILDEAISFTTHHLSLAVASL-----DHPLSEEVSHALKQSIRRGLPRVEARH 216
Query: 177 FIHVYEKREDKNHLLLELAKLEFNTLQAIYQEELKDISG--------------------- 215
++ VY+ E N LLE AK++FN LQ ++++EL +I
Sbjct: 217 YLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEG 276
Query: 216 ----MGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALK 271
G+ FEPQ++ R++LT IA+ +++DD YD Y T +EL +T+A+ERWDI +
Sbjct: 277 YFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIK-CID 335
Query: 272 HLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTP 331
+P YMK + AL + E V + + KNA + L Q+YLVEAKW Y P
Sbjct: 336 EIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKP 395
Query: 332 KLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLG 390
EE+ N L + ++ S++ + + + ++ S+P I+ S+ I R DD+
Sbjct: 396 SFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVA 454
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 141/420 (33%), Positives = 225/420 (53%), Gaps = 41/420 (9%)
Query: 2 ETYKRRAEELKGKVKTAIKDVTEPL-DQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXK 60
E Y + E LK + + + L D L LID ++RLG++YHFE E
Sbjct: 40 EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNS 99
Query: 61 DYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGF---ICDDFKGILSLHEASY 117
+ N +L ++L+FRLLRQHG+ +S E+FS F+D+ F + D G+L+L+EAS+
Sbjct: 100 NCN----DLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASH 155
Query: 118 YSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWF 177
+ I+E+A F++ HL+ S + EQ ALE LH VP +E R+F
Sbjct: 156 VRTHADDILEDALAFSTIHLESAAPHLKSP-----LREQVTHALEQCLHKGVPRVETRFF 210
Query: 178 IH-VYEKREDKNHLLLELAKLEFNTLQAIYQEELKDIS---------------------- 214
I +Y+K + KN++LL AKL+FN LQ ++++EL +S
Sbjct: 211 ISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVEC 270
Query: 215 ---GMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALK 271
+G+ FEPQ++ R +L +I++I+++DD +D YGT+ ELE +TDA++RWDIN +
Sbjct: 271 YFSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EID 329
Query: 272 HLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTP 331
LP YMK+ + A+ + ++ + ++ +++ Y VE+ W+ YTP
Sbjct: 330 RLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTP 389
Query: 332 KLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGT 391
+ EYL N L + T + T SYL G +++ E+L NP I+ S I+R+ DD T
Sbjct: 390 PVSEYLSNALATTTYYYLATTSYL-GMKSATEQDFEWLSKNPKILEASVIIWRVIDDTAT 448
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 141/420 (33%), Positives = 224/420 (53%), Gaps = 41/420 (9%)
Query: 2 ETYKRRAEELKGKVKTAIKDVTEPL-DQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXK 60
E Y + E LK + + + L D L LID ++RLG++YHFE E
Sbjct: 40 EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNS 99
Query: 61 DYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGF---ICDDFKGILSLHEASY 117
+ N +L ++L+FRLLRQHG+ +S E+FS F+D+ F + D G+L+L+EAS+
Sbjct: 100 NCN----DLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASH 155
Query: 118 YSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWF 177
+ I+E+A F++ HL+ S + EQ ALE LH VP +E R+F
Sbjct: 156 VRTHADDILEDALAFSTIHLESAAPHLKSP-----LREQVTHALEQCLHKGVPRVETRFF 210
Query: 178 IH-VYEKREDKNHLLLELAKLEFNTLQAIYQEELKDIS---------------------- 214
I +Y+K + KN++LL AKL+FN LQ ++++EL +S
Sbjct: 211 ISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVEC 270
Query: 215 ---GMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALK 271
+G+ FEPQ++ R +L +I++I+++DD +D YGT+ ELE +TDA++RWDIN +
Sbjct: 271 YFSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EID 329
Query: 272 HLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTP 331
LP YMK+ + A+ + ++ + ++ +++ Y VE+ W+ YTP
Sbjct: 330 RLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTP 389
Query: 332 KLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGT 391
+ EYL N L + T + T SYL G +++ E+L NP I+ S I R+ DD T
Sbjct: 390 PVSEYLSNALATTTYYYLATTSYL-GMKSATEQDFEWLSKNPKILEASVIICRVIDDTAT 448
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 141/420 (33%), Positives = 225/420 (53%), Gaps = 41/420 (9%)
Query: 2 ETYKRRAEELKGKVKTAIKDVTEPL-DQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXK 60
E Y + E LK + + + L D L LID ++RLG++YHFE E
Sbjct: 40 EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNS 99
Query: 61 DYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGF---ICDDFKGILSLHEASY 117
+ N +L ++L+FRLLRQHG+ +S E+FS F+D+ F + D G+L+L+EAS+
Sbjct: 100 NCN----DLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASH 155
Query: 118 YSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWF 177
+ I+E+A F++ HL+ S + EQ ALE LH VP +E R+F
Sbjct: 156 VRTHADDILEDALAFSTIHLESAAPHLKSP-----LREQVTHALEQCLHKGVPRVETRFF 210
Query: 178 IH-VYEKREDKNHLLLELAKLEFNTLQAIYQEELKDIS---------------------- 214
I +Y+K + KN++LL AKL+FN LQ ++++EL +S
Sbjct: 211 ISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVEC 270
Query: 215 ---GMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALK 271
+G+ FEPQ++ R +L +I++I+++DD +D YGT+ ELE +TDA++RWDIN +
Sbjct: 271 YFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EID 329
Query: 272 HLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTP 331
LP YMK+ + A+ + ++ + ++ +++ Y VE+ W+ YTP
Sbjct: 330 RLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTP 389
Query: 332 KLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGT 391
+ EYL N L + T + T SYL G +++ E+L NP I+ S I+R+ DD T
Sbjct: 390 PVSEYLSNALATTTYYYLATTSYL-GMKSATEQDFEWLSKNPKILEASVIIWRVIDDTAT 448
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/420 (33%), Positives = 224/420 (53%), Gaps = 41/420 (9%)
Query: 2 ETYKRRAEELKGKVKTAIKDVTEPL-DQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXK 60
E Y + E LK + + + L D L LID ++RLG++YHFE E
Sbjct: 40 EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNS 99
Query: 61 DYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGF---ICDDFKGILSLHEASY 117
+ N +L ++L+FRLLRQHG+ +S E+FS F+D+ F + D G+L+L+EAS+
Sbjct: 100 NCN----DLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASH 155
Query: 118 YSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWF 177
+ I+E+A F++ HL+ S + EQ ALE LH VP +E R+F
Sbjct: 156 VRTHADDILEDALAFSTIHLESAAPHLKSP-----LREQVTHALEQCLHKGVPRVETRFF 210
Query: 178 IH-VYEKREDKNHLLLELAKLEFNTLQAIYQEELKDIS---------------------- 214
I +Y+K + KN++LL AKL+FN LQ ++++EL +S
Sbjct: 211 ISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVEC 270
Query: 215 ---GMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALK 271
+G+ FEPQ++ R +L +I++I+++DD +D YGT+ ELE +TDA++RWDIN +
Sbjct: 271 YFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EID 329
Query: 272 HLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTP 331
LP YMK+ + A+ + ++ + ++ +++ Y VE+ W+ YTP
Sbjct: 330 RLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTP 389
Query: 332 KLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGT 391
+ EYL N L + T + T SYL G +++ E+L NP I+ S I R+ DD T
Sbjct: 390 PVSEYLSNALATTTYYYLATTSYL-GMKSATEQDFEWLSKNPKILEASVIICRVIDDTAT 448
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/420 (33%), Positives = 224/420 (53%), Gaps = 41/420 (9%)
Query: 2 ETYKRRAEELKGKVKTAIKDVTEPL-DQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXK 60
E Y + E LK + + + L D L LID ++RLG++YHFE E
Sbjct: 42 EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNS 101
Query: 61 DYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGF---ICDDFKGILSLHEASY 117
+ N +L ++L+FRLLRQHG+ +S E+FS F+D+ F + D G+L+L+EAS+
Sbjct: 102 NCN----DLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASH 157
Query: 118 YSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWF 177
+ I+E+A F++ HL+ S + EQ ALE LH VP +E R+F
Sbjct: 158 VRTHADDILEDALAFSTIHLESAAPHLKSP-----LREQVTHALEQCLHKGVPRVETRFF 212
Query: 178 IH-VYEKREDKNHLLLELAKLEFNTLQAIYQEELKDIS---------------------- 214
I +Y+K + KN++LL AKL+FN LQ ++++EL +S
Sbjct: 213 ISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVEC 272
Query: 215 ---GMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALK 271
+G+ FEPQ++ R +L +I++I+++DD +D YGT+ ELE +TDA++RWDIN +
Sbjct: 273 YFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EID 331
Query: 272 HLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTP 331
LP YMK+ + A+ + ++ + ++ +++ Y VE+ W+ YTP
Sbjct: 332 RLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTP 391
Query: 332 KLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGT 391
+ EYL N L + T + T SYL G +++ E+L NP I+ S I R+ DD T
Sbjct: 392 PVSEYLSNALATTTYYYLATTSYL-GMKSATEQDFEWLSKNPKILEASVIICRVIDDTAT 450
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/420 (33%), Positives = 224/420 (53%), Gaps = 41/420 (9%)
Query: 2 ETYKRRAEELKGKVKTAIKDVTEPL-DQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXK 60
E Y + E LK + + + L D L LID ++RLG++YHFE E
Sbjct: 27 EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNS 86
Query: 61 DYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGF---ICDDFKGILSLHEASY 117
+ N +L ++L+FRLLRQHG+ +S E+FS F+D+ F + D G+L+L+EAS+
Sbjct: 87 NCN----DLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASH 142
Query: 118 YSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWF 177
+ I+E+A F++ HL+ S + EQ ALE LH VP +E R+F
Sbjct: 143 VRTHADDILEDALAFSTIHLESAAPHLKSP-----LREQVTHALEQCLHKGVPRVETRFF 197
Query: 178 IH-VYEKREDKNHLLLELAKLEFNTLQAIYQEELKDIS---------------------- 214
I +Y+K + KN++LL AKL+FN LQ ++++EL +S
Sbjct: 198 ISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVEC 257
Query: 215 ---GMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALK 271
+G+ FEPQ++ R +L +I++I+++DD +D YGT+ ELE +TDA++RWDIN +
Sbjct: 258 YFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EID 316
Query: 272 HLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTP 331
LP YMK+ + A+ + ++ + ++ +++ Y VE+ W+ YTP
Sbjct: 317 RLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTP 376
Query: 332 KLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGT 391
+ EYL N L + T + T SYL G +++ E+L NP I+ S I R+ DD T
Sbjct: 377 PVSEYLSNALATTTYYYLATTSYL-GMKSATEQDFEWLSKNPKILEASVIICRVIDDTAT 435
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/420 (33%), Positives = 225/420 (53%), Gaps = 41/420 (9%)
Query: 2 ETYKRRAEELKGKVKTAIKDVTEPL-DQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXK 60
E Y + E LK + ++ + L D L LID ++RLG++YHFE E
Sbjct: 40 EKYAQEIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNS 99
Query: 61 DYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGF---ICDDFKGILSLHEASY 117
+ N +L ++L+FRLLRQHG+ +S E+FS F+D+ F + D G+L+L+EAS+
Sbjct: 100 NCN----DLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASH 155
Query: 118 YSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWF 177
+ I+E+A F++ HL+ S + EQ ALE LH VP +E R+F
Sbjct: 156 VRTHADDILEDALAFSTIHLESAAPHLKSP-----LREQVTHALEQCLHKGVPRVETRFF 210
Query: 178 IH-VYEKREDKNHLLLELAKLEFNTLQAIYQEELKDIS---------------------- 214
I +Y+K + KN++LL AKL+FN LQ ++++EL +S
Sbjct: 211 ISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVEC 270
Query: 215 ---GMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALK 271
+G+ FEPQ++ R +L +I++I+++DD +D YGT+ ELE +TDA++RWDIN +
Sbjct: 271 YFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EID 329
Query: 272 HLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTP 331
LP YMK+ + A+ + ++ + ++ +++ Y VE+ W+ YTP
Sbjct: 330 RLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTP 389
Query: 332 KLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGT 391
+ EYL N L + T + T SYL G +++ E+L NP I+ S I R+ DD T
Sbjct: 390 PVSEYLSNALATTTYYYLATTSYL-GMKSATEQDFEWLSKNPKILEASVIICRVIDDTAT 448
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/420 (33%), Positives = 225/420 (53%), Gaps = 41/420 (9%)
Query: 2 ETYKRRAEELKGKVKTAIKDVTEPL-DQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXK 60
E Y + E LK + ++ + L D L LID ++RLG++YHFE E
Sbjct: 40 EKYAQEIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNS 99
Query: 61 DYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGF---ICDDFKGILSLHEASY 117
+ N +L ++L+FRLLRQHG+ +S E+FS F+D+ F + D G+L+L+EAS+
Sbjct: 100 NCN----DLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASH 155
Query: 118 YSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWF 177
+ I+E+A F++ HL+ S + EQ ALE LH VP +E R+F
Sbjct: 156 VRTHADDILEDALAFSTIHLESAAPHLKSP-----LREQVTHALEQCLHKGVPRVETRFF 210
Query: 178 IH-VYEKREDKNHLLLELAKLEFNTLQAIYQEELKDIS---------------------- 214
I +Y+K + KN++LL AKL+FN LQ ++++EL +S
Sbjct: 211 ISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVEC 270
Query: 215 ---GMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALK 271
+G+ FEPQ++ R +L +I++I+++DD +D YGT+ ELE +TDA++RWDIN +
Sbjct: 271 YFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EID 329
Query: 272 HLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTP 331
LP YMK+ + A+ + ++ + ++ +++ Y VE+ W+ YTP
Sbjct: 330 RLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTP 389
Query: 332 KLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGT 391
+ EYL N L + T + T SYL G +++ E+L NP I+ S I R+ DD T
Sbjct: 390 PVSEYLSNALATTTYYYLATTSYL-GMKSATEQDFEWLSKNPKILEASVIICRVIDDTAT 448
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 142/420 (33%), Positives = 225/420 (53%), Gaps = 41/420 (9%)
Query: 2 ETYKRRAEELKGKVKTAIKDVTEPL-DQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXK 60
E Y + E LK + + + L D L LID ++RLG++YHFE E
Sbjct: 42 EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNS 101
Query: 61 DYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGF---ICDDFKGILSLHEASY 117
+ N +L ++L+FRLLRQHG+ +S E+FS F+D+ F + D G+L+L+EAS+
Sbjct: 102 NCN----DLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASH 157
Query: 118 YSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWF 177
+ I+E+A F++ HL+ S + EQ ALE LH VP +E R+F
Sbjct: 158 VRTHADDILEDALAFSTIHLESAAPHLKSP-----LREQVTHALEQCLHKGVPRVETRFF 212
Query: 178 IH-VYEKREDKNHLLLELAKLEFNTLQAIYQEELKDIS---------------------- 214
I +Y+K + KN++LL AKL+FN LQ ++++EL +S
Sbjct: 213 ISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVEC 272
Query: 215 ---GMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALK 271
+G+ FEPQ++ R +L +I++I+++DD +D YGT+ ELE +TDA++RWDIN +
Sbjct: 273 YFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EID 331
Query: 272 HLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTP 331
LP YMK+ + A+ + ++ + ++ +++ Y VE+ W+ YTP
Sbjct: 332 RLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTP 391
Query: 332 KLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGT 391
+ EYL N L + T L+ T SYL G +++ E+L NP I+ S I R+ DD T
Sbjct: 392 PVSEYLSNALATTTYYLLATTSYL-GMKSATEQDFEWLSKNPKILEASVIICRVIDDTAT 450
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 144/426 (33%), Positives = 223/426 (52%), Gaps = 62/426 (14%)
Query: 25 PLDQLE---LIDNLQRLGLAYHFEPEXXXXXXXXXX--XXKDYNWRKEN----LYATSLE 75
P+D LE ++DN+ RLG+ HFE E + W + N L T+L
Sbjct: 295 PVDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALG 354
Query: 76 FRLLRQHGYPVSQEVFSGFKDDKVGFICD------DFKGILSLHEASYYSLEGESIMEEA 129
FRLLR H Y VS +F FKD FIC D +L+L+ AS + GE+I++EA
Sbjct: 355 FRLLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEA 414
Query: 130 WQFTSKHLKEMMI---TSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFIHVYEKRED 186
F +K+L+E + TS++ ++++ K AL+ H VP +EA+ + VY R D
Sbjct: 415 KSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVY--RPD 472
Query: 187 --------------KNHLLLELAKLEFNTLQAIYQEELKDI------SGMGI-------- 218
N LEL KL+FN +Q+I+QEE+K++ SG+ +
Sbjct: 473 YARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGLPLFTFARERP 532
Query: 219 ----------AFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINY 268
+EPQ+A CR + T L TV+DD+YD YGTLDEL+LFT+AV RWD+++
Sbjct: 533 LEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSF 592
Query: 269 ALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSK 328
++LP YMK+C+ Y+ V+E A+ K+Q +++ + W + Y EA+W ++
Sbjct: 593 T-ENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAE 651
Query: 329 YTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKE-LEFLE--SNPDIVHWSSKIFRL 385
Y P L+EY++NG+ SI +++ L ++ +E LE ++ + +S I RL
Sbjct: 652 YVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRL 711
Query: 386 QDDLGT 391
DD T
Sbjct: 712 ADDTKT 717
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 194 bits (492), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 127/387 (32%), Positives = 198/387 (51%), Gaps = 59/387 (15%)
Query: 25 PLDQLE---LIDNLQRLGLAYHFEPEXXXXXXXXXXX--XKDYNWRKEN----LYATSLE 75
PLD E +D ++RLG+ HF+ E + W +EN + T++
Sbjct: 267 PLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMG 326
Query: 76 FRLLRQHGYPVSQEVFSGFKDDKVGFICDDFKG--------ILSLHEASYYSLEGESIME 127
R+LR HGY VS +V F+D+ F C F G +L+++ S+ S GE+IME
Sbjct: 327 LRILRLHGYNVSSDVLKTFRDENGEFFC--FLGQTQRGVTDMLNVNRCSHVSFPGETIME 384
Query: 128 EAWQFTSKHLKEMMITSNSKEEDVF---VAEQAKRALELPLHWKVPMLEARWFIH----- 179
EA T ++L+ + ++ ++ F + + + AL+ P H +P LEAR +I
Sbjct: 385 EAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPD 444
Query: 180 -------VYEKREDKNHLLLELAKLEFNTLQAIYQEELKDI------------------- 213
VY N LELAKL+FN +Q+I+Q EL+D+
Sbjct: 445 DVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFTDLNFTRERV 504
Query: 214 -----SGMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINY 268
S FEP+F+ CR V T + ++DD+YD +G+LD+L+LFT++V+RWD++
Sbjct: 505 TEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSL 564
Query: 269 ALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSK 328
+ +P MK+CF+ YN N+ A ++Q D+L I+N W ++AY EA+W +K
Sbjct: 565 -VDQMPQQMKICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAK 623
Query: 329 YTPKLEEYLENGLVSITGPLIITISYL 355
Y P EY+EN VSI ++ IS L
Sbjct: 624 YVPSFNEYIENASVSIALGTVVLISAL 650
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 168 bits (425), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 122/407 (29%), Positives = 196/407 (48%), Gaps = 58/407 (14%)
Query: 26 LDQLELIDNLQRLGLAYHFEPEXXXXXXXXXX--XXKDYNWRKENLY----ATSLEFRLL 79
L++L L+DN++ LG+ HF+ E + W +++L T+L R L
Sbjct: 247 LERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTL 306
Query: 80 RQHGYPVSQEVFSGFKDDKVGFICD------DFKGILSLHEASYYSLEGESIMEEAWQFT 133
R HGY VS +V + FKD+ F + + +++L AS + E M++A +F
Sbjct: 307 RMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFA 366
Query: 134 SKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFIHVYE-----KRED-- 186
+L+E + T S +F ++ + +E P H +P LEAR +I Y+ +R+
Sbjct: 367 EPYLREALATKISTNTKLF--KEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLY 424
Query: 187 -----KNHLLLELAKLEFNTLQAIYQEELKDI------SGMG----------------IA 219
N LELAKL+FN +Q+++QEELK + SGM
Sbjct: 425 RMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMADINFTRHRVAEVYFSSAT 484
Query: 220 FEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKM 279
FEP+++ R T L + DD+ D++ TLDEL+ FT+ V+RWD + L +P M+
Sbjct: 485 FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSL-LHEIPECMQT 543
Query: 280 CFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLEN 339
CF + + E V+K Q DML I+ W Y+ E +W + Y P EEYL+
Sbjct: 544 CFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKT 603
Query: 340 GLVSIT-GPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRL 385
+S+ GP + L G ++K ++ + VH+ S +F L
Sbjct: 604 YAISVGLGPCTLQPILLMGE--LVKDDV------VEKVHYPSNMFEL 642
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 102/215 (47%), Gaps = 30/215 (13%)
Query: 25 PLDQLE---LIDNLQRLGLAYHFEPEXXXXXXXXXXXXKDYN--WRK----ENLYATSLE 75
P+D E ++D LQRLG++ +FE E D W + +++ T++
Sbjct: 242 PVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMA 301
Query: 76 FRLLRQHGYPVSQEVFSGFKDDK-----VGFICDDFKGILSLHEASYYSLEGESIMEEAW 130
FRLLRQHGY VS +VF F+ + VG G+ +L+ AS + E I++ A
Sbjct: 302 FRLLRQHGYQVSADVFKNFEKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAK 361
Query: 131 QFTSKHLKEMMITSNSKEEDVFVAE---QAKRALELPLHWKVPMLEARWFIHVYEKRED- 186
+F+ +L E ++ + + + + ALE+P + +P +E R++I Y D
Sbjct: 362 EFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDV 421
Query: 187 ------------KNHLLLELAKLEFNTLQAIYQEE 209
N+ LELAK ++N QA +Q E
Sbjct: 422 WIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLE 456
>pdb|4F6V|A Chain A, Crystal Structure Of Dehydrosqualene Synthase (Crtm) From
S. Aureus Complexed With Bph-1034, Mg2+ And Fmp.
pdb|4F6X|A Chain A, Crystal Structure Of Dehydrosqualene Synthase (Crtm) From
S. Aureus Complexed With Bph-1112
Length = 292
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 18/91 (19%)
Query: 228 RRVLTISIALITVIDDIYDVYGT---LDELELFTDAVERWDINY-----------ALKHL 273
R+ + A+ IDD DVYG L++++ ++E++ Y AL+H+
Sbjct: 39 RKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSDRRIMMALQHV 98
Query: 274 PGYMKMCFLALYNFVNEFAYYVLKQQDFDML 304
+ + F + YN ++ V K Q F M
Sbjct: 99 AQHKNIAFQSFYNLIDT----VYKDQHFTMF 125
>pdb|3VJD|A Chain A, Crystal Structure Of The Y248a Mutant Of C(30) Carotenoid
Dehydrosqualene Synthase From Staphylococcus Aureus
pdb|3VJE|A Chain A, Crystal Structure Of The Y248a Mutant Of C(30) Carotenoid
Dehydrosqualene Synthase From Staphylococcus Aureus In
Complex With Zaragozic Acid A
pdb|3VJE|B Chain B, Crystal Structure Of The Y248a Mutant Of C(30) Carotenoid
Dehydrosqualene Synthase From Staphylococcus Aureus In
Complex With Zaragozic Acid A
Length = 293
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 18/83 (21%)
Query: 236 ALITVIDDIYDVYGT---LDELELFTDAVERWDINY-----------ALKHLPGYMKMCF 281
A+ IDD DVYG L++++ ++E++ Y AL+H+ + + F
Sbjct: 48 AVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSDRRIMMALQHVAQHKNIAF 107
Query: 282 LALYNFVNEFAYYVLKQQDFDML 304
+ YN ++ V K Q F M
Sbjct: 108 QSFYNLIDT----VYKDQHFTMF 126
>pdb|3AE0|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Geranylgeranyl Thiopyrophosphate
pdb|3AE0|B Chain B, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Geranylgeranyl Thiopyrophosphate
Length = 293
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 18/83 (21%)
Query: 236 ALITVIDDIYDVYGT---LDELELFTDAVERWDINY-----------ALKHLPGYMKMCF 281
A+ IDD DVYG L++++ ++E++ Y AL+H+ + + F
Sbjct: 48 AVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSDRRIMMALQHVAQHKNIAF 107
Query: 282 LALYNFVNEFAYYVLKQQDFDML 304
+ YN ++ V K Q F M
Sbjct: 108 QSFYNLIDT----VYKDQHFTMF 126
>pdb|3ADZ|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Intermediate Pspp
pdb|3LGZ|B Chain B, Crystal Structure Of Dehydrosqualene Synthase Y129a From
S. Aureus Complexed With Presqualene Pyrophosphate
Length = 293
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 18/83 (21%)
Query: 236 ALITVIDDIYDVYGT---LDELELFTDAVERWDINY-----------ALKHLPGYMKMCF 281
A+ IDD DVYG L++++ ++E++ Y AL+H+ + + F
Sbjct: 48 AVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSDRRIMMALQHVAQHKNIAF 107
Query: 282 LALYNFVNEFAYYVLKQQDFDML 304
+ YN ++ V K Q F M
Sbjct: 108 QSFYNLIDT----VYKDQHFTMF 126
>pdb|2ZCO|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus
pdb|2ZCP|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Farnesyl Thiopyrophosphate
pdb|2ZCP|B Chain B, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Farnesyl Thiopyrophosphate
pdb|2ZCQ|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Bisphosphonate Bph-652
pdb|2ZCR|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Bisphosphonate Bph-698
pdb|2ZCS|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Bisphosphonate Bph-700
pdb|2ZY1|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Bisphosphonate Bph-830
pdb|3ACW|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Bph-651
pdb|3ACX|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Bph-673
pdb|3ACY|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Bph-702
pdb|3NPR|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From S. Aureus Complexed With Presqualene
Diphosphate (Pspp)
pdb|3NRI|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From S. Aureus Complexed With Dehydrosqualene
(Dhs)
pdb|3TFN|A Chain A, Crystal Structure Of Dehydrosqualene Synthase (Crtm) From
S. Aureus Complexed With Bph-1183
pdb|3TFP|A Chain A, Crystal Structure Of Dehydrosqualene Synthase (Crtm) From
S. Aureus Complexed With Bph-1162
pdb|3TFV|A Chain A, Crystal Structure Of Dehydrosqualene Synthase (Crtm) From
S. Aureus Complexed With Bph-1154
Length = 293
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 18/83 (21%)
Query: 236 ALITVIDDIYDVYGT---LDELELFTDAVERWDINY-----------ALKHLPGYMKMCF 281
A+ IDD DVYG L++++ ++E++ Y AL+H+ + + F
Sbjct: 48 AVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSDRRIMMALQHVAQHKNIAF 107
Query: 282 LALYNFVNEFAYYVLKQQDFDML 304
+ YN ++ V K Q F M
Sbjct: 108 QSFYNLIDT----VYKDQHFTMF 126
>pdb|4E9U|A Chain A, Crystal Structure Of Dehydrosqualene Synthase (Crtm) From
S. Aureus Complexed With A Thiocyanate Inhibitor
pdb|4E9Z|A Chain A, Crystal Structure Of Dehydrosqualene Synthase (Crtm) From
S. Aureus Complexed With Quinuclidine Bph-651 In The S1
Site
pdb|4EA0|A Chain A, Crystal Structure Of Dehydrosqualene Synthase (Crtm) From
S. Aureus Complexed With Diphosphate And Quinuclidine
Bph-651
pdb|4EA0|B Chain B, Crystal Structure Of Dehydrosqualene Synthase (Crtm) From
S. Aureus Complexed With Diphosphate And Quinuclidine
Bph-651
pdb|4EA1|A Chain A, Co-Crystal Structure Of Dehydrosqualene Synthase (Crtm)
From S. Aureus With Sq-109
pdb|4EA2|A Chain A, Crystal Structure Of Dehydrosqualene Synthase (Crtm)
Aureus Complexed With Sq-109
Length = 287
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 18/83 (21%)
Query: 236 ALITVIDDIYDVYGT---LDELELFTDAVERWDINY-----------ALKHLPGYMKMCF 281
A+ IDD DVYG L++++ ++E++ Y AL+H+ + + F
Sbjct: 42 AVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSDRRIMMALQHVAQHKNIAF 101
Query: 282 LALYNFVNEFAYYVLKQQDFDML 304
+ YN ++ V K Q F M
Sbjct: 102 QSFYNLIDT----VYKDQHFTMF 120
>pdb|1L1L|A Chain A, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
pdb|1L1L|B Chain B, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
pdb|1L1L|C Chain C, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
pdb|1L1L|D Chain D, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
Length = 739
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 2 ETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLA 41
ETY++R++E+ G V+ + + LEL+D G A
Sbjct: 696 ETYEKRSQEITGNVEEVFSQLNSDVKDLELVDQTDCEGGA 735
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,869,880
Number of Sequences: 62578
Number of extensions: 492524
Number of successful extensions: 1351
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1222
Number of HSP's gapped (non-prelim): 39
length of query: 393
length of database: 14,973,337
effective HSP length: 101
effective length of query: 292
effective length of database: 8,652,959
effective search space: 2526664028
effective search space used: 2526664028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)