Query 043404
Match_columns 393
No_of_seqs 150 out of 766
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 04:43:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043404.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043404hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 2E-118 5E-123 940.5 38.5 386 3-393 28-447 (542)
2 PLN02279 ent-kaur-16-ene synth 100.0 3E-112 6E-117 916.9 35.4 365 23-393 268-680 (784)
3 PLN02592 ent-copalyl diphospha 100.0 1.9E-97 4E-102 799.6 31.9 344 23-393 308-721 (800)
4 PF01397 Terpene_synth: Terpen 100.0 1.8E-53 4E-58 390.4 15.9 157 2-161 22-183 (183)
5 PF03936 Terpene_synth_C: Terp 100.0 6.3E-31 1.4E-35 250.9 17.3 201 191-392 1-227 (270)
6 cd00868 Terpene_cyclase_C1 Ter 100.0 1.9E-27 4.1E-32 228.6 19.6 177 216-393 37-213 (284)
7 cd00687 Terpene_cyclase_nonpla 99.7 1.3E-17 2.9E-22 163.0 10.5 175 213-393 43-219 (303)
8 cd00385 Isoprenoid_Biosyn_C1 I 99.3 2.7E-12 5.9E-17 117.3 7.8 163 216-393 4-166 (243)
9 cd00867 Trans_IPPS Trans-Isopr 70.5 14 0.0003 34.5 6.8 85 303-392 86-171 (236)
10 COG0864 NikR Predicted transcr 55.8 19 0.0004 32.0 4.3 54 273-346 11-64 (136)
11 PF00494 SQS_PSY: Squalene/phy 49.3 1.2E+02 0.0026 28.9 9.2 123 216-357 10-136 (267)
12 cd00685 Trans_IPPS_HT Trans-Is 47.9 73 0.0016 30.6 7.5 85 302-391 108-193 (259)
13 TIGR03486 cas_csx13_C CRISPR-a 38.6 82 0.0018 28.5 5.7 108 225-336 6-124 (152)
14 PF14165 YtzH: YtzH-like prote 34.1 1.4E+02 0.0031 24.5 5.9 38 245-285 19-56 (87)
15 PLN02890 geranyl diphosphate s 33.3 1.4E+02 0.0031 31.3 7.4 87 301-392 226-313 (422)
16 COG4738 Predicted transcriptio 32.8 1.3E+02 0.0028 26.1 5.7 76 29-114 14-102 (124)
17 TIGR02749 prenyl_cyano solanes 32.2 2.9E+02 0.0063 27.7 9.2 85 302-392 133-219 (322)
18 COG4904 Uncharacterized protei 27.5 4.8E+02 0.01 23.8 10.8 52 186-250 28-81 (174)
19 CHL00151 preA prenyl transfera 26.2 6.6E+02 0.014 25.0 16.4 85 302-392 134-220 (323)
20 COG0142 IspA Geranylgeranyl py 25.6 3.8E+02 0.0082 26.8 8.7 85 302-392 134-219 (322)
21 COG4860 Uncharacterized protei 24.8 1.1E+02 0.0024 27.6 4.0 59 277-343 26-89 (170)
22 PF08843 DUF1814: Nucleotidyl 24.8 1.6E+02 0.0035 26.7 5.5 95 222-339 129-233 (233)
23 PF14164 YqzH: YqzH-like prote 24.7 37 0.0008 26.3 1.0 19 76-94 11-29 (64)
24 TIGR02748 GerC3_HepT heptapren 24.1 2.8E+02 0.006 27.7 7.4 84 302-391 129-214 (319)
25 PRK10888 octaprenyl diphosphat 23.2 4.7E+02 0.01 26.2 8.9 85 302-392 130-216 (323)
26 PRK00630 nickel responsive reg 22.3 2E+02 0.0044 25.8 5.4 40 273-326 17-56 (148)
27 PF11848 DUF3368: Domain of un 21.7 36 0.00079 24.4 0.4 20 76-95 25-44 (48)
28 cd07604 BAR_ASAPs The Bin/Amph 20.5 2.7E+02 0.0058 26.5 6.1 83 4-96 14-99 (215)
29 COG5123 TOA2 Transcription ini 20.4 54 0.0012 27.7 1.2 42 106-161 1-42 (113)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=2.4e-118 Score=940.46 Aligned_cols=386 Identities=50% Similarity=0.772 Sum_probs=369.6
Q ss_pred hHHHHHHHHHHHHHHHHhh---cCCccchhHHHHHHHHhCCccCcHHHHHHHHHHHHhcccccc--cccCChhhhhHHHH
Q 043404 3 TYKRRAEELKGKVKTAIKD---VTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNKDYN--WRKENLYATSLEFR 77 (393)
Q Consensus 3 ~~~~~~~~lk~~vr~~l~~---~~d~~~~l~lID~lqRLGI~~hFe~EI~~~L~~i~~~~~~~~--~~~~dL~~~Al~FR 77 (393)
.+.+++++||++||+||.. ..|++++|++||+||||||+|||++||+++|++||++| ... ....||++|||+||
T Consensus 28 ~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~-~~~~~~~~~dl~~~al~FR 106 (542)
T cd00684 28 ELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEILDYIYRYW-TERGESNEDDLYTTALGFR 106 (542)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhh-cccccccCCCHHHHHHHHH
Confidence 4678999999999999986 57999999999999999999999999999999999984 321 22579999999999
Q ss_pred HhhhcCcccccccccccccCCccc---cccchHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhccC-CCCcchhH
Q 043404 78 LLRQHGYPVSQEVFSGFKDDKVGF---ICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSN-SKEEDVFV 153 (393)
Q Consensus 78 LLRqhGy~VS~DvF~~F~d~~G~F---~~~d~~glL~LYeAS~l~~~gE~iLdeA~~fs~~~L~~~~~~~~-~~~~~~~L 153 (393)
|||||||+||||||++|+|++|+| +.+||+||||||||||+++|||+|||||++||++||++++.. + .+++ +|
T Consensus 107 lLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLdeA~~ft~~~L~~~~~~-~~~~~~--~l 183 (542)
T cd00684 107 LLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLES-NWIIDP--DL 183 (542)
T ss_pred HHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHhhc-cCCCCc--hH
Confidence 999999999999999999999999 789999999999999999999999999999999999999821 1 1677 99
Q ss_pred HHHHHHHcCCCccCCchhhHHhhhHHHhhccccccHHHHHHHhhhhHHHHHHhHHHHHHHHh------------------
Q 043404 154 AEQAKRALELPLHWKVPMLEARWFIHVYEKREDKNHLLLELAKLEFNTLQAIYQEELKDISG------------------ 215 (393)
Q Consensus 154 ~~~V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~lsr------------------ 215 (393)
+++|++||++|||+++||||||+||++|++++++|++||||||+|||+||++||+||++++|
T Consensus 184 ~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ 263 (542)
T cd00684 184 SGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRL 263 (542)
T ss_pred HHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHHHHHHHHhHHHHhcCCcccCCcccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------hccccCCCchhHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHH
Q 043404 216 -------MGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFV 288 (393)
Q Consensus 216 -------~~~~fEP~~s~~Ri~~aK~~~l~tviDD~yD~ygTleEl~~ft~av~RWD~~~~i~~LPeymki~f~al~~~~ 288 (393)
+|++|||++|.+|+++||++++++++||+||+|||+|||+.||+||+|||++ +++.||+|||+||.+|++++
T Consensus 264 ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~rwd~~-~~~~lPe~mk~~~~al~~~~ 342 (542)
T cd00684 264 VECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERWDIS-AIDQLPEYMKIVFKALLNTV 342 (542)
T ss_pred HHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHHHHHhcccc-chhhccHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhcCCCccchHHHhh
Q 043404 289 NEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEF 368 (393)
Q Consensus 289 ~ei~~~~~~~~g~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~~g~~~t~e~~~w 368 (393)
+|++.++.+.+|++..+|++++|+++++||++||+|+++||+||++|||+|+.+|+|++++++.++++||+.+|+++++|
T Consensus 343 ~ei~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~ 422 (542)
T cd00684 343 NEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEEAFEW 422 (542)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHHHhcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHhhhcccCCCC
Q 043404 369 LESNPDIVHWSSKIFRLQDDLGTSS 393 (393)
Q Consensus 369 ~~~~p~i~~~~~~i~RL~nDi~t~~ 393 (393)
+..+|+++++++.++||+||++|++
T Consensus 423 ~~~~~~l~~~~~~i~rL~NDi~S~~ 447 (542)
T cd00684 423 LESRPKLVRASSTIGRLMNDIATYE 447 (542)
T ss_pred HhccHHHHHHHHHHHHHhcChhhhH
Confidence 9878999999999999999999985
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=3e-112 Score=916.92 Aligned_cols=365 Identities=28% Similarity=0.406 Sum_probs=343.9
Q ss_pred CCccchhHHHHHHHHhCCccCcHHHHHHHHHHHHhcc-cccccccCChhhhhHHHHHhhhcCcccccccccccccCCccc
Q 043404 23 TEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHN-KDYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGF 101 (393)
Q Consensus 23 ~d~~~~l~lID~lqRLGI~~hFe~EI~~~L~~i~~~~-~~~~~~~~dL~~~Al~FRLLRqhGy~VS~DvF~~F~d~~G~F 101 (393)
.++++++|+||+||||||+|||++||+++|+++|++| ....+...|+++|||+|||||||||+||||||++|+|++ |
T Consensus 268 ~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~~~--F 345 (784)
T PLN02279 268 LDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEEEIFLDLATCALAFRILRLNGYDVSSDPLKQFAEDH--F 345 (784)
T ss_pred ccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHcCCCCChhHHhhcCCCc--c
Confidence 5899999999999999999999999999999999985 212223579999999999999999999999999999765 7
Q ss_pred ---c---ccchHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhccCC-----CCcchhHHHHHHHHcCCCccCCch
Q 043404 102 ---I---CDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNS-----KEEDVFVAEQAKRALELPLHWKVP 170 (393)
Q Consensus 102 ---~---~~d~~glL~LYeAS~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~-----~~~~~~L~~~V~~aL~~P~~~~~~ 170 (393)
+ .+|++||||||||||+++|||+|||||+.||++||++.+.. +. +++ +|+++|+|||++|||+++|
T Consensus 346 ~~~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~-~~~~~~~~~~--~L~~eV~~AL~~P~~~~l~ 422 (784)
T PLN02279 346 SDSLGGYLKDTGAVLELFRASQISYPDESLLEKQNSWTSHFLEQGLSN-WSKTADRLRK--YIKKEVEDALNFPYYANLE 422 (784)
T ss_pred cchhcccchhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhc-ccccccccCc--cHHHHHHHHhcCchhcCcc
Confidence 3 58999999999999999999999999999999999998832 21 456 8999999999999999999
Q ss_pred hhHHhhhHHHhhcccc------------ccHHHHHHHhhhhHHHHHHhHHHHHHHHh-----------------------
Q 043404 171 MLEARWFIHVYEKRED------------KNHLLLELAKLEFNTLQAIYQEELKDISG----------------------- 215 (393)
Q Consensus 171 Rlear~yI~~Y~~~~~------------~n~~lLelAkldFn~~Q~~hq~EL~~lsr----------------------- 215 (393)
|||||+||++|++++. +|+.||||||+|||+||++||+||++|+|
T Consensus 423 RlEaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rWwke~~L~~L~faRdr~ve~Yf~ 502 (784)
T PLN02279 423 RLANRRSIENYAVDDTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLERWIVENRLDKLKFARQKLAYCYFS 502 (784)
T ss_pred HHHHHHHHHHhccccchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCeeHHhcCCccCCchhhHHHHHHHH
Confidence 9999999999998885 89999999999999999999999999999
Q ss_pred -hccccCCCchhHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHHHHH
Q 043404 216 -MGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNEFAYY 294 (393)
Q Consensus 216 -~~~~fEP~~s~~Ri~~aK~~~l~tviDD~yD~ygTleEl~~ft~av~RWD~~~~i~~LPeymki~f~al~~~~~ei~~~ 294 (393)
+|++|||+||.+|++|||+++|+|++||+||+|||+|||++||+||+|||++..++.||+|||+||.+|++++||++.+
T Consensus 503 aaa~~fEPe~S~aRi~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aVeRWD~~~~~~~lpeymki~f~aL~~t~nei~~~ 582 (784)
T PLN02279 503 AAATLFSPELSDARLSWAKNGVLTTVVDDFFDVGGSEEELENLIQLVEKWDVNGSPDFCSEQVEIIFSALRSTISEIGDK 582 (784)
T ss_pred HHHhhcCchhhHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhccccchhhCcHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999998556999999999999999999999999
Q ss_pred HHhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhcCCCccchHHHhhccCChH
Q 043404 295 VLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPD 374 (393)
Q Consensus 295 ~~~~~g~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~~g~~~t~e~~~w~~~~p~ 374 (393)
+.+.||+++++|++++|+++++||++||||+++||+||++|||+||.+|+|.+++++++++++|+.+|+|+++|. ++|+
T Consensus 583 ~~~~qGr~v~~~l~~aW~~ll~ayl~EAeW~~~g~vPT~eEYL~na~vS~~l~~i~l~~~~~~G~~l~eev~e~~-~~~~ 661 (784)
T PLN02279 583 AFTWQGRNVTSHIIKIWLDLLKSMLTEAQWSSNKSTPTLDEYMTNAYVSFALGPIVLPALYLVGPKLSEEVVDSP-ELHK 661 (784)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhchhhhhhHHHHHHHHHHhCCCCCHHHHhCc-chhH
Confidence 999999999999999999999999999999999999999999999999999988888888889999999999995 7999
Q ss_pred HHHHHHHHHhhhcccCCCC
Q 043404 375 IVHWSSKIFRLQDDLGTSS 393 (393)
Q Consensus 375 i~~~~~~i~RL~nDi~t~~ 393 (393)
|+++++.|+||+|||+||+
T Consensus 662 L~~l~s~I~RLlNDI~S~e 680 (784)
T PLN02279 662 LYKLMSTCGRLLNDIRGFK 680 (784)
T ss_pred HHHHHHHHHHHHHhccccH
Confidence 9999999999999999985
No 3
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=1.9e-97 Score=799.57 Aligned_cols=344 Identities=25% Similarity=0.336 Sum_probs=317.5
Q ss_pred CCccchhHHHHHHHHhCCccCcHHHHHHHHHHHHhcc-cccc-----cccCChhhhhHHHHHhhhcCccccccccccccc
Q 043404 23 TEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHN-KDYN-----WRKENLYATSLEFRLLRQHGYPVSQEVFSGFKD 96 (393)
Q Consensus 23 ~d~~~~l~lID~lqRLGI~~hFe~EI~~~L~~i~~~~-~~~~-----~~~~dL~~~Al~FRLLRqhGy~VS~DvF~~F~d 96 (393)
.+++++||+||+||||||+|||++||+++|+++|++| .... ....|+++|||+|||||||||+||||||++|++
T Consensus 308 ~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~DvF~~F~~ 387 (800)
T PLN02592 308 VDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQVSADVFKHFEK 387 (800)
T ss_pred CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhcC
Confidence 5899999999999999999999999999999999975 2111 124799999999999999999999999999997
Q ss_pred CCccc------cccchHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhccCC------CCcchhHHHHHHHHcCCC
Q 043404 97 DKVGF------ICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNS------KEEDVFVAEQAKRALELP 164 (393)
Q Consensus 97 ~~G~F------~~~d~~glL~LYeAS~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~------~~~~~~L~~~V~~aL~~P 164 (393)
+|.| ..+|++||||||||||+++|||.|||+|+.||++||++.+.. ++ +++ +|+++|+|||++|
T Consensus 388 -~g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~-~~l~d~~~~~~--~L~~eV~~AL~~P 463 (800)
T PLN02592 388 -GGEFFCFAGQSTQAVTGMFNLYRASQVLFPGEKILENAKEFSSKFLREKQEA-NELLDKWIIMK--DLPGEVGFALEIP 463 (800)
T ss_pred -CCCccccccccccchHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhc-cccccccccCc--cHHHHHHHhccCh
Confidence 7999 278999999999999999999999999999999999998632 22 345 8999999999999
Q ss_pred ccCCchhhHHhhhHHHhhccccc-------------cHHHHHHHhhhhHHHHHHhHHHHHHHHh----------------
Q 043404 165 LHWKVPMLEARWFIHVYEKREDK-------------NHLLLELAKLEFNTLQAIYQEELKDISG---------------- 215 (393)
Q Consensus 165 ~~~~~~Rlear~yI~~Y~~~~~~-------------n~~lLelAkldFn~~Q~~hq~EL~~lsr---------------- 215 (393)
||+++||||||+||++|++++++ |+.||||||+|||+||++||+||++++|
T Consensus 464 ~~~~l~RlEaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsrWwke~~L~~L~faRdr 543 (800)
T PLN02592 464 WYASLPRVETRFYIEQYGGEDDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEECNLGEFGVSRSE 543 (800)
T ss_pred hhcCcchHHHHHHHHHhcCCcccchhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhcCCCcCCcchhH
Confidence 99999999999999999987764 9999999999999999999999999999
Q ss_pred --------hccccCCCchhHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhh--------hcchhhhhhcCCh----
Q 043404 216 --------MGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVE--------RWDINYALKHLPG---- 275 (393)
Q Consensus 216 --------~~~~fEP~~s~~Ri~~aK~~~l~tviDD~yD~ygTleEl~~ft~av~--------RWD~~~~i~~LPe---- 275 (393)
+|++|||+||.+|++|||+++|+|++||+||+|||+|||++||++|+ |||.+ ++++||+
T Consensus 544 ~ve~Yfwa~~~~feP~~s~~Ri~~aK~~~LitviDD~fD~yGt~eEl~~ft~~v~~~~~~~~~rWd~~-~~~~lp~~~~~ 622 (800)
T PLN02592 544 LLLAYFLAAASIFEPERSHERLAWAKTTVLVEAISSYFNKETSSKQRRAFLHEFGYGYKINGRRSDHH-FNDRNMRRSGS 622 (800)
T ss_pred HHHHHHHHHHhhcCccchHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccccccccCch-hhhcccccccc
Confidence 89999999999999999999999999999999999999999999997 99999 9999998
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHH
Q 043404 276 --YMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITIS 353 (393)
Q Consensus 276 --ymki~f~al~~~~~ei~~~~~~~~g~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s 353 (393)
|||+||.||||++|||+.++.+.||+++++||+++|.++|+ +|+++|| +|+|++.+++++
T Consensus 623 ~~~mki~f~aLy~tineia~~a~~~qGr~v~~~L~~~W~~l~~------~w~~~g~------------~s~~~~~ilv~~ 684 (800)
T PLN02592 623 VKTGEELVGLLLGTLNQLSLDALEAHGRDISHLLRHAWEMWLL------KWLLEGD------------GRQGEAELLVKT 684 (800)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH------HHHhcCc------------eeccchhhHHHH
Confidence 99999999999999999999999999999999999999998 6766665 566788888999
Q ss_pred Hh-cCCCccchHHHhhccCChHHHHHHHHHHhhhcccCCCC
Q 043404 354 YL-SGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSS 393 (393)
Q Consensus 354 ~~-~~g~~~t~e~~~w~~~~p~i~~~~~~i~RL~nDi~t~~ 393 (393)
++ .+|+.+|+|+++ +|++.++++++.||+||++|++
T Consensus 685 ~~l~~g~~lsee~l~----~~~~~~l~~li~Rl~nDl~t~~ 721 (800)
T PLN02592 685 INLTAGRSLSEELLA----HPQYEQLAQLTNRICYQLGHYK 721 (800)
T ss_pred HHHhcCCCCCHHHcc----chhHHHHHHHHHHHHHhhhHHh
Confidence 98 459999999775 8999999999999999999974
No 4
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=1.8e-53 Score=390.44 Aligned_cols=157 Identities=50% Similarity=0.772 Sum_probs=133.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhcC-CccchhHHHHHHHHhCCccCcHHHHHHHHHHHHhcccccccccCChhhhhHHHHHhh
Q 043404 2 ETYKRRAEELKGKVKTAIKDVT-EPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNKDYNWRKENLYATSLEFRLLR 80 (393)
Q Consensus 2 ~~~~~~~~~lk~~vr~~l~~~~-d~~~~l~lID~lqRLGI~~hFe~EI~~~L~~i~~~~~~~~~~~~dL~~~Al~FRLLR 80 (393)
+++.+++++||++||.||.... |++++|+|||+||||||+|||++||+++|+++|+.|........||++|||+|||||
T Consensus 22 ~~~~~~~~~Lk~~v~~~l~~~~~d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~dL~~~AL~FRLLR 101 (183)
T PF01397_consen 22 EKCKERAEELKEEVRNMLPASYPDPLEKLELIDTLQRLGISYHFEDEIKEILDSIYRSWDEDNEEIDDLYTTALRFRLLR 101 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTTTTTSHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhccccccccCchhHHHHHHHHHH
Confidence 4678999999999999998744 799999999999999999999999999999999985222212359999999999999
Q ss_pred hcCcccccccccccccCCccc---cccchHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhccCCC-CcchhHHHH
Q 043404 81 QHGYPVSQEVFSGFKDDKVGF---ICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSK-EEDVFVAEQ 156 (393)
Q Consensus 81 qhGy~VS~DvF~~F~d~~G~F---~~~d~~glL~LYeAS~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~-~~~~~L~~~ 156 (393)
||||+||||||++|+|++|+| +++|++||||||||||+++|||+|||||+.||++||++++.. ... ++ +|+++
T Consensus 102 qhGy~VS~DvF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~-~~~~~~--~L~~~ 178 (183)
T PF01397_consen 102 QHGYYVSSDVFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRFHGEDILDEARAFTTKHLKSLLSN-LSIPDP--HLAKE 178 (183)
T ss_dssp HTT----GGGGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--TT-HHHHHHHHHHHHHHHHHHTT-TCTTSC--HHHHH
T ss_pred HcCCcccHHHHhCcccCCCccchhhhHhHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHhcc-CCCCcH--HHHHH
Confidence 999999999999999999999 889999999999999999999999999999999999999832 222 23 69999
Q ss_pred HHHHc
Q 043404 157 AKRAL 161 (393)
Q Consensus 157 V~~aL 161 (393)
|+|||
T Consensus 179 V~~AL 183 (183)
T PF01397_consen 179 VKHAL 183 (183)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99997
No 5
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=99.97 E-value=6.3e-31 Score=250.90 Aligned_cols=201 Identities=32% Similarity=0.393 Sum_probs=186.6
Q ss_pred HHHHHhhhhHHHHHHhHHHHHHHHh-------------------------hccccCCCchhHHHHHHHHHHHHHhhhhhh
Q 043404 191 LLELAKLEFNTLQAIYQEELKDISG-------------------------MGIAFEPQFAYCRRVLTISIALITVIDDIY 245 (393)
Q Consensus 191 lLelAkldFn~~Q~~hq~EL~~lsr-------------------------~~~~fEP~~s~~Ri~~aK~~~l~tviDD~y 245 (393)
+|+|||+|||.||++||+|++++.+ ++.++.|..+..|+.+||.++++.++||+|
T Consensus 1 ~~~la~~~~~~~~~~~~~e~~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~aa~~~P~~~~~l~~~a~~~~w~f~~DD~~ 80 (270)
T PF03936_consen 1 YLELAKRDFPHCQALHQQELEEIDRWVKEFGLFDEDKAARQRFRQAYFGLLAARFYPDSSDELLAAADWMAWLFIFDDFF 80 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHTTSHHHHHHHHHHHHHHHHSGCGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhhcHhhHHHHHHHHHHHHHHHHHcCCccccccchhhhhHhHHhhhhheeCCCcHHHHHHHHhhchheeeeeecc
Confidence 6899999999999999999999998 678899998899999999999999999999
Q ss_pred cccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhcCCcc-hhHHHHHHHHHHHHHHHHHHHH
Q 043404 246 DVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFD-MLLSIKNAWLGLIQAYLVEAKW 324 (393)
Q Consensus 246 D~ygTleEl~~ft~av~RWD~~~~i~~LPeymki~f~al~~~~~ei~~~~~~~~g~~-~~~~lk~~w~~l~~ayl~EAkW 324 (393)
|..|+.++++.|+++++|||+. ..+.+|++++.++.++.++++++...+.+.+++. +.+++++.|.+++++++.|++|
T Consensus 81 D~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 159 (270)
T PF03936_consen 81 DDGGSAEELEALTDAVERWDPN-SGDPLPDPDKPLFRALADIWNRIAARMSPAQRRRDQIKRFRNSWREYLNAYLWEARW 159 (270)
T ss_dssp HTTSHHHHHHHHHHHHHHTSSG-GGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhccccc-ccccccchhHHHHHHHHHHHHHHHHHhhhhhcccHHhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997 8889999999999999999999999999987654 8899999999999999999999
Q ss_pred hhcCCCCCHHHHhhhccccchhhHHHHHHHhcCCCccchHHHhhccCChHHHHHHHHHHhhhcccCCC
Q 043404 325 YHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTS 392 (393)
Q Consensus 325 ~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~~g~~~t~e~~~w~~~~p~i~~~~~~i~RL~nDi~t~ 392 (393)
..+|++||++||++....|+|.++++....++||...+++..+++.+.|.+.++++.+++|+|||.|+
T Consensus 160 ~~~~~~ps~eeYl~~R~~t~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~ 227 (270)
T PF03936_consen 160 RERGRIPSLEEYLEMRRHTSGVYPCLALIEFALEFALGELPPEVLEHPPMLRRLAADIIRLVNDLYSY 227 (270)
T ss_dssp HHTTS--SHHHHHHHHHHHTSHHHHHHHHHHHCSSCHTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCCHHHHHHhccccccccHHHHHHHHhCCCccccccHHHHHhchHHHHHHHHHHHHhcccchh
Confidence 99999999999999999999998888888777877778777888888888999999999999999876
No 6
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=99.95 E-value=1.9e-27 Score=228.57 Aligned_cols=177 Identities=49% Similarity=0.770 Sum_probs=168.7
Q ss_pred hccccCCCchhHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHHHHHH
Q 043404 216 MGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNEFAYYV 295 (393)
Q Consensus 216 ~~~~fEP~~s~~Ri~~aK~~~l~tviDD~yD~ygTleEl~~ft~av~RWD~~~~i~~LPeymki~f~al~~~~~ei~~~~ 295 (393)
++++|+|+.+..|+++||.++++.++||.||.+|+.+|+..|+++++||+.. ..+.+|++++.++.+++++.+++...+
T Consensus 37 a~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~l~d~~~r~~~~~ 115 (284)
T cd00868 37 AGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEELELFTEAVERWDIS-AIDELPEYMKPVFKALYDLVNEIEEEL 115 (284)
T ss_pred HHhhcCccchHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHhcChh-hhhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999999999999999999999999999999998 999999999999999999999999999
Q ss_pred HhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhcCCCccchHHHhhccCChHH
Q 043404 296 LKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDI 375 (393)
Q Consensus 296 ~~~~g~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~~g~~~t~e~~~w~~~~p~i 375 (393)
.+.+|+.....+++.|..++++++.||+|..+|++||++||+.+...|+|.++++....+++|..++++.+.+....+++
T Consensus 116 ~~~~~~~~~~r~~~~~~~~~~~~~~e~~~~~~~~~p~~~eYl~~R~~~~g~~~~~~l~~~~~g~~l~~~~~~~~~~~~~l 195 (284)
T cd00868 116 AKEGGSESLPYLKEAWKDLLRAYLVEAKWANEGYVPSFEEYLENRRVSIGYPPLLALSFLGMGDILPEEAFEWLPSYPKL 195 (284)
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhceehhhHHHHHHHHHHHcCCCCCHHHHHHhhhhHHH
Confidence 99999899999999999999999999999999999999999999999999988888888889999998777777778999
Q ss_pred HHHHHHHHhhhcccCCCC
Q 043404 376 VHWSSKIFRLQDDLGTSS 393 (393)
Q Consensus 376 ~~~~~~i~RL~nDi~t~~ 393 (393)
++.++.+++|+||+.|++
T Consensus 196 ~~~~~~~~~l~NDl~S~~ 213 (284)
T cd00868 196 VRASSTIGRLLNDIASYE 213 (284)
T ss_pred HHHHHHHHHHhccchHHH
Confidence 999999999999999873
No 7
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=99.73 E-value=1.3e-17 Score=162.95 Aligned_cols=175 Identities=16% Similarity=0.084 Sum_probs=144.9
Q ss_pred HHhhccccCCCchhHHHHHH-HHHHHHHhhhhhhccc-CCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHH
Q 043404 213 ISGMGIAFEPQFAYCRRVLT-ISIALITVIDDIYDVY-GTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNE 290 (393)
Q Consensus 213 lsr~~~~fEP~~s~~Ri~~a-K~~~l~tviDD~yD~y-gTleEl~~ft~av~RWD~~~~i~~LPeymki~f~al~~~~~e 290 (393)
+.+.+.++.|+.+..|+.++ +.+.++.++||.||.. ++.+++..+++.+.+|........ |.....+..++.++...
T Consensus 43 ~~~~~a~~~P~a~~~~l~l~~~~~~w~f~~DD~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~d~~~r 121 (303)
T cd00687 43 FGDLAALFYPDADDERLMLAADLMAWLFVFDDLLDRDQKSPEDGEAGVTRLLDILRGDGLDS-PDDATPLEFGLADLWRR 121 (303)
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHHHHHHhccCCCCCCC-CCCCCHHHHHHHHHHHH
Confidence 34467789999999999665 9999999999999998 499999999988888766412222 57888889999988888
Q ss_pred HHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhcCCCccchHHHhhcc
Q 043404 291 FAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLE 370 (393)
Q Consensus 291 i~~~~~~~~g~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~~g~~~t~e~~~w~~ 370 (393)
+...+. ......+++.|.+++.|++.|++|..+|++||++||+++...|+|.++++..+.+++|..++.++.+. .
T Consensus 122 ~~~~~~----~~~~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~eYl~~R~~~~g~~~~~~l~~~~~g~~lp~~~~~~-~ 196 (303)
T cd00687 122 TLARMS----AEWFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEYLEMRRFNIGADPCLGLSEFIGGPEVPAAVRLD-P 196 (303)
T ss_pred hccCCC----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhhhcccccccHHHHHHhcCCCCCHHHHhC-h
Confidence 776542 34468899999999999999999999999999999999999999988877777777887788875443 2
Q ss_pred CChHHHHHHHHHHhhhcccCCCC
Q 043404 371 SNPDIVHWSSKIFRLQDDLGTSS 393 (393)
Q Consensus 371 ~~p~i~~~~~~i~RL~nDi~t~~ 393 (393)
...+++++++.+++|+|||.|++
T Consensus 197 ~~~~l~~~~~~~~~l~NDl~S~~ 219 (303)
T cd00687 197 VMRALEALASDAIALVNDIYSYE 219 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhH
Confidence 23459999999999999999874
No 8
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.33 E-value=2.7e-12 Score=117.26 Aligned_cols=163 Identities=28% Similarity=0.265 Sum_probs=128.5
Q ss_pred hccccCCCchhHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHHHHHH
Q 043404 216 MGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNEFAYYV 295 (393)
Q Consensus 216 ~~~~fEP~~s~~Ri~~aK~~~l~tviDD~yD~ygTleEl~~ft~av~RWD~~~~i~~LPeymki~f~al~~~~~ei~~~~ 295 (393)
++++++|+++..|..++++.++..++||++|..++..+.......+ .....|.++...+..+...+.++....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (243)
T cd00385 4 LAVLLEPEASRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAV-------AIDGLPEAILAGDLLLADAFEELAREG 76 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhH-------HhcCchHHHHHHHHHHHHHHHHHHhCC
Confidence 4568899999999999999999999999999999888776665443 123578888888999999998887542
Q ss_pred HhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhcCCCccchHHHhhccCChHH
Q 043404 296 LKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDI 375 (393)
Q Consensus 296 ~~~~g~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~~g~~~t~e~~~w~~~~p~i 375 (393)
. ......+++.|.+++.++..|+.|..+ +.||++||+.....++|++...+ ...+++...++ ..+.....++
T Consensus 77 ~----~~~~~~~~~~~~~~~~g~~~d~~~~~~-~~~t~~ey~~~~~~~t~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~ 148 (243)
T cd00385 77 S----PEALEILAEALLDLLEGQLLDLKWRRE-YVPTLEEYLEYCRYKTAGLVGAL-CLLGAGLSGGE--AELLEALRKL 148 (243)
T ss_pred C----HHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHhCCC--HHHHHHHHHH
Confidence 2 456788999999999999999999977 89999999999999985554433 33333333333 4444456788
Q ss_pred HHHHHHHHhhhcccCCCC
Q 043404 376 VHWSSKIFRLQDDLGTSS 393 (393)
Q Consensus 376 ~~~~~~i~RL~nDi~t~~ 393 (393)
.+..+.+.++.||+.++.
T Consensus 149 ~~~~g~~~ql~nDl~~~~ 166 (243)
T cd00385 149 GRALGLAFQLTNDLLDYE 166 (243)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999998763
No 9
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=70.51 E-value=14 Score=34.47 Aligned_cols=85 Identities=18% Similarity=0.090 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccc-cchhhHHHHHHHhcCCCccchHHHhhccCChHHHHHHHH
Q 043404 303 MLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLV-SITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSK 381 (393)
Q Consensus 303 ~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~i-S~g~~~l~~~s~~~~g~~~t~e~~~w~~~~p~i~~~~~~ 381 (393)
+.....+....++.+...+..|..+ ..||+++|++...- |.+....++....+++. .+++..+. ..++.+..++
T Consensus 86 ~~~~~~~~~~~~~~Gq~~Dl~~~~~-~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~lG~ 160 (236)
T cd00867 86 ALELFAEALRELLEGQALDLEFERD-TYETLDEYLEYCRYKTAGLVGLLCLLGAGLSG-ADDEQAEA---LKDYGRALGL 160 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHhccHHHHHHHHHHHHHHcC-cCHHHHHH---HHHHHHHHHH
Confidence 4566778889999999999998754 57999999999887 55544333333333333 23333333 2467889999
Q ss_pred HHhhhcccCCC
Q 043404 382 IFRLQDDLGTS 392 (393)
Q Consensus 382 i~RL~nDi~t~ 392 (393)
...+.||+...
T Consensus 161 a~Qi~dd~~D~ 171 (236)
T cd00867 161 AFQLTDDLLDV 171 (236)
T ss_pred HHHHHHHhccc
Confidence 99999998753
No 10
>COG0864 NikR Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain [Transcription]
Probab=55.83 E-value=19 Score=32.01 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=36.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchh
Q 043404 273 LPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITG 346 (393)
Q Consensus 273 LPeymki~f~al~~~~~ei~~~~~~~~g~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~ 346 (393)
||+.+ ++.++++ +.+.+..++. +...+.+|.|++|-+|.+.. +-+..|.++..+
T Consensus 11 Lp~~L-------l~elD~~---i~~rg~~sRS----E~IrdAir~yl~e~~~~~~~------~~~~~G~i~vvy 64 (136)
T COG0864 11 LPEEL-------LEELDEL---IEERGYSSRS----ELIRDALREYLEEYRWLEDI------EGERAGVITVVY 64 (136)
T ss_pred CcHHH-------HHHHHHH---HHHcCCCcHH----HHHHHHHHHHHHHhhhhccc------cceeEEEEEEEE
Confidence 77766 4445444 4445666655 55667789999999999754 445566666554
No 11
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=49.34 E-value=1.2e+02 Score=28.93 Aligned_cols=123 Identities=16% Similarity=0.124 Sum_probs=73.4
Q ss_pred hccccCCCchhHHHHHHHHHHHHHhhhhhhcccCCHHH----HHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHH
Q 043404 216 MGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDE----LELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNEF 291 (393)
Q Consensus 216 ~~~~fEP~~s~~Ri~~aK~~~l~tviDD~yD~ygTleE----l~~ft~av~RWD~~~~i~~LPeymki~f~al~~~~~ei 291 (393)
+++.+-| ...|..+.=+-.+.-.+||+=|......+ |+-+-+++++.-.+ ..+..|.....+..++..++...
T Consensus 10 ~a~~~lP--~~~R~~~~alyaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~~~-~~~~~~~~~~pv~~~l~~~~~~~ 86 (267)
T PF00494_consen 10 LASLLLP--KEKRPAVFALYAFCRELDDIVDEPSDPEEARARLQWWRDALNSIFAS-YEDSLPEPSHPVARALADLVRRY 86 (267)
T ss_dssp HHHTTS---HHHHHHHHHHHHHHHHHHHHHHCTSS-HSCHHHHHHHHHHHHHHHH--TSTHHHSSHHHHHHHHHHHHCCS
T ss_pred HHHHHCC--HHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhh-hhhccCCCcCHHHHHHHHHHHHH
Confidence 4555666 56777888888889999999998875443 33444555443221 11233444455666665554332
Q ss_pred HHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhcC
Q 043404 292 AYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSG 357 (393)
Q Consensus 292 ~~~~~~~~g~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~~ 357 (393)
. .-++.+.+++.++-+ +....-.||++|+..=+.-+.|....++...++.
T Consensus 87 ~-------------l~~~~l~~li~~~~~---dl~~~~~~t~~~L~~Y~~~vag~vg~l~~~~~~~ 136 (267)
T PF00494_consen 87 G-------------LPREPLLELIDGMEM---DLEFTPYETFADLERYCYYVAGSVGLLLLQLLGA 136 (267)
T ss_dssp H-------------HHHHHHHHHHHHHHH---CTT-S--SSHHHHHHHHHHHTHHHHHHHHHHHHS
T ss_pred h-------------hhHHHHHHHHHHhcc---cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 334556677777763 4444557899999888888888766666666655
No 12
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=47.92 E-value=73 Score=30.56 Aligned_cols=85 Identities=19% Similarity=0.076 Sum_probs=56.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhc-CCCccchHHHhhccCChHHHHHHH
Q 043404 302 DMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLS-GTNPIIKKELEFLESNPDIVHWSS 380 (393)
Q Consensus 302 ~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~-~g~~~t~e~~~w~~~~p~i~~~~~ 380 (393)
.++..+-+....++..-..+-.|... ..||.++|++...--+|.....++...+ ++. .+.+..+-+ -++-+..+
T Consensus 108 ~~~~~~~~~~~~~~~GQ~~d~~~~~~-~~~~~~~y~~~~~~KT~~l~~~~~~~~a~l~~-~~~~~~~~l---~~~g~~lG 182 (259)
T cd00685 108 RALELFSEAILELVEGQLLDLLSEYD-TDVTEEEYLRIIRLKTAALFAAAPLLGALLAG-ADEEEAEAL---KRFGRNLG 182 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC-CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHH
Confidence 45666777888888888888888654 6799999999987777754332221111 121 234433333 46788889
Q ss_pred HHHhhhcccCC
Q 043404 381 KIFRLQDDLGT 391 (393)
Q Consensus 381 ~i~RL~nDi~t 391 (393)
+..-+.||+..
T Consensus 183 ~afQi~DD~ld 193 (259)
T cd00685 183 LAFQIQDDILD 193 (259)
T ss_pred HHHHHHHHhhc
Confidence 99999999754
No 13
>TIGR03486 cas_csx13_C CRISPR-associated protein, Cas_csx13 family, C-terminal region. Members of this family are found among cas (CRISPR-Associated) genes close to CRISPR repeats in Leptospira interrogans (a spirochete), Myxococcus xanthus (a delta-proteobacterium), and Lyngbya sp. PCC 8106 (a cyanobacterium). It is found with other cas genes in Anabaena variabilis ATCC 29413. In Lyngbya sp., the protein is split into two tandem genes. This model corresponds to the C-terminal region or upstream gene; the N-terminal region is modelled by TIGR03485. CRISPR/cas systems are associated with prokaryotic acquired resistance to phage and other exogenous DNA.
Probab=38.59 E-value=82 Score=28.52 Aligned_cols=108 Identities=20% Similarity=0.192 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhcC--Cc-
Q 043404 225 AYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQ--DF- 301 (393)
Q Consensus 225 s~~Ri~~aK~~~l~tviDD~yD~ygTleEl~~ft~av~RWD~~~~i~~LPeymki~f~al~~~~~ei~~~~~~~~--g~- 301 (393)
+..|-.++-...+++-=||+=.-.---+.|..+++.++.||.. + ++ --++.|-.|+-.++..|.......| +.
T Consensus 6 a~grpW~a~F~~~~~~~~~f~~~~~er~gL~~M~~~~~~~~~e-~-eq--~fiqa~HeAlr~~~~qI~~~tk~~g~~~~~ 81 (152)
T TIGR03486 6 AQGRPWYANFAKPLKWKIDFKERKRERDELNKMIENSEIWDSE-A-EQ--WFVQSFHEALRRIYAKIASHTKRRGSETLG 81 (152)
T ss_pred hcCCcHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHhcccH-H-HH--HHHHHHHHHHHHHHHHHHHHhhhhcccchh
Confidence 3444455555555554444422222344566778888778743 1 11 1234455555555666665554422 11
Q ss_pred chhH-HHHHHHHHHHHHHHHH------H-HHhhcCCCCCHHHH
Q 043404 302 DMLL-SIKNAWLGLIQAYLVE------A-KWYHSKYTPKLEEY 336 (393)
Q Consensus 302 ~~~~-~lk~~w~~l~~ayl~E------A-kW~~~~y~Pt~eEY 336 (393)
.... --.+.-..+.+++-.| | =|...|-.||++|+
T Consensus 82 ~~~e~e~erir~~l~r~kt~~~fr~~i~df~srAg~~~~Lqe~ 124 (152)
T TIGR03486 82 DRWKRENERIYSSLARAKTSEQFRTFIADLWARAGRIPSLQEH 124 (152)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHccCCcchHHH
Confidence 1111 1111122233332222 1 27778888888877
No 14
>PF14165 YtzH: YtzH-like protein
Probab=34.06 E-value=1.4e+02 Score=24.50 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=27.6
Q ss_pred hcccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHH
Q 043404 245 YDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALY 285 (393)
Q Consensus 245 yD~ygTleEl~~ft~av~RWD~~~~i~~LPeymki~f~al~ 285 (393)
-|++||..|++-....|+. .- +-..++..+|-+..-+|
T Consensus 19 ~DccgTvsEcEQieRLvks--Lm-~n~~i~~~ik~~L~~Iy 56 (87)
T PF14165_consen 19 LDCCGTVSECEQIERLVKS--LM-ANPNIDADIKQTLEEIY 56 (87)
T ss_pred hhccCcHHHHHHHHHHHHH--HH-cCCCcCHHHHHHHHHHH
Confidence 6899999999998888875 33 44456777766655554
No 15
>PLN02890 geranyl diphosphate synthase
Probab=33.32 E-value=1.4e+02 Score=31.28 Aligned_cols=87 Identities=8% Similarity=-0.000 Sum_probs=59.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHh-cCCCccchHHHhhccCChHHHHHH
Q 043404 301 FDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYL-SGTNPIIKKELEFLESNPDIVHWS 379 (393)
Q Consensus 301 ~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~-~~g~~~t~e~~~w~~~~p~i~~~~ 379 (393)
..++..+-++...+|..-+.+..|.. +..+|.++|++...--+|...-.++..- .++. .+++..+.+ -++-+..
T Consensus 226 ~~~~~~~s~a~~~l~~Gq~ld~~~~~-~~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilag-a~~~~~~~l---~~fG~~l 300 (422)
T PLN02890 226 TEVVSLLATAVEHLVTGETMQITSSR-EQRRSMDYYMQKTYYKTASLISNSCKAVAILAG-QTAEVAVLA---FEYGRNL 300 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC-cCHHHHHHH---HHHHHHH
Confidence 34667788888999999999998874 4568999999887666665432222111 1222 456655554 3678889
Q ss_pred HHHHhhhcccCCC
Q 043404 380 SKIFRLQDDLGTS 392 (393)
Q Consensus 380 ~~i~RL~nDi~t~ 392 (393)
++...+.||+-.+
T Consensus 301 GlAFQI~DDiLD~ 313 (422)
T PLN02890 301 GLAFQLIDDVLDF 313 (422)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998653
No 16
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=32.83 E-value=1.3e+02 Score=26.10 Aligned_cols=76 Identities=26% Similarity=0.267 Sum_probs=45.0
Q ss_pred hHHHHHHHHhCCccCcHHHHHHHHHHHHhccccccc------ccCCh--hhhhHHHHHhhhcCcccccccccccccCCcc
Q 043404 29 LELIDNLQRLGLAYHFEPEIRNILRNIHNHNKDYNW------RKENL--YATSLEFRLLRQHGYPVSQEVFSGFKDDKVG 100 (393)
Q Consensus 29 l~lID~lqRLGI~~hFe~EI~~~L~~i~~~~~~~~~------~~~dL--~~~Al~FRLLRqhGy~VS~DvF~~F~d~~G~ 100 (393)
-.+|+.|++|||++-- -..|-.+-+. +.. ....| -.+|++-|.||.+| +|.----+| + .+|.
T Consensus 14 ~~~ie~L~~lgi~R~v----A~tlv~L~~~---~E~sS~~IE~~sgLRQPEVSiAMr~Lre~g-WV~~R~eKK-k-GKGR 83 (124)
T COG4738 14 YEIIELLRILGIPRNV----ATTLVCLAKG---DEASSREIERVSGLRQPEVSIAMRYLRENG-WVDEREEKK-K-GKGR 83 (124)
T ss_pred HHHHHHHHHcCCCchH----HHHHHHHhcC---cchhhhhhHHhhcCCCchhHHHHHHHHHcc-ccchHHhcc-c-CCCC
Confidence 4689999999999852 2233333221 211 01222 26899999999999 554434444 3 3464
Q ss_pred c-----cccchHHHHHHHH
Q 043404 101 F-----ICDDFKGILSLHE 114 (393)
Q Consensus 101 F-----~~~d~~glL~LYe 114 (393)
= ++.+...+++-++
T Consensus 84 Pik~Y~Lt~~~~eIvs~ie 102 (124)
T COG4738 84 PIKLYRLTVPFDEIVSEIE 102 (124)
T ss_pred CceEEEecCcHHHHHHHHH
Confidence 3 6667777666543
No 17
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=32.24 E-value=2.9e+02 Score=27.66 Aligned_cols=85 Identities=13% Similarity=0.111 Sum_probs=55.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhc--CCCccchHHHhhccCChHHHHHH
Q 043404 302 DMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLS--GTNPIIKKELEFLESNPDIVHWS 379 (393)
Q Consensus 302 ~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~--~g~~~t~e~~~w~~~~p~i~~~~ 379 (393)
.++..+.++...+|..-+.+..|.. ...+|.++|++...--+|...-.+ ..+| ++. .+++..+.+ -++-+..
T Consensus 133 ~~~~~~~~~~~~~~~Gq~~~~~~~~-~~~~~~~~y~~~~~~KTa~L~~~~-~~~ga~~ag-~~~~~~~~l---~~~G~~l 206 (322)
T TIGR02749 133 EVVKLISKVITDFAEGEIKQGLNQF-DSDLSLEDYLEKSFYKTASLVAAS-SKAAAVLSD-VPSQVANDL---YEYGKHL 206 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHccHHHHHHHH-HHHHHHHcC-cCHHHHHHH---HHHHHHH
Confidence 4566677778888888887777753 345899999998766666432211 1111 122 345544443 4677889
Q ss_pred HHHHhhhcccCCC
Q 043404 380 SKIFRLQDDLGTS 392 (393)
Q Consensus 380 ~~i~RL~nDi~t~ 392 (393)
++...+.||+-.+
T Consensus 207 G~aFQi~DDild~ 219 (322)
T TIGR02749 207 GLAFQVVDDILDF 219 (322)
T ss_pred HHHHHHHHHhccC
Confidence 9999999998654
No 18
>COG4904 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.49 E-value=4.8e+02 Score=23.78 Aligned_cols=52 Identities=27% Similarity=0.499 Sum_probs=37.8
Q ss_pred cccHHHHHHHhhhhHHHHHHhHHHHHHHHhhccccCCCchhHHHHHHHHHHHH--HhhhhhhcccCC
Q 043404 186 DKNHLLLELAKLEFNTLQAIYQEELKDISGMGIAFEPQFAYCRRVLTISIALI--TVIDDIYDVYGT 250 (393)
Q Consensus 186 ~~n~~lLelAkldFn~~Q~~hq~EL~~lsr~~~~fEP~~s~~Ri~~aK~~~l~--tviDD~yD~ygT 250 (393)
++++.+=++--.|||++ +.-.+|++.++ ||.-++|...++ .++.|+|..||-
T Consensus 28 D~~~~ld~~~~~d~~l~-~~l~~evr~~~------------~~kDl~k~~~~v~~k~~~~FYEnyGf 81 (174)
T COG4904 28 DIDDGLDDIPPADEKLV-AELKEEVRSLS------------CRKDLTKAAKLVWRKTVEAFYENYGF 81 (174)
T ss_pred chhhhhhcCCchhhHHH-HHHHHHHHhhH------------HHhhhHHHHHHHHHHHHHHHHHHcCC
Confidence 44555666777889875 45566766544 888888887665 689999999985
No 19
>CHL00151 preA prenyl transferase; Reviewed
Probab=26.20 E-value=6.6e+02 Score=25.03 Aligned_cols=85 Identities=9% Similarity=0.040 Sum_probs=54.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHh--cCCCccchHHHhhccCChHHHHHH
Q 043404 302 DMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYL--SGTNPIIKKELEFLESNPDIVHWS 379 (393)
Q Consensus 302 ~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~--~~g~~~t~e~~~w~~~~p~i~~~~ 379 (393)
.+...+.++...++.+-+.+..|.. ...+|.++|+....--+|...-.+ ..+ .++. .+++..+.+ -++-+..
T Consensus 134 ~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~yl~~i~~KTa~L~~~~-~~~ga~lag-~~~~~~~~l---~~~G~~l 207 (323)
T CHL00151 134 EVVKLISKVITDFAEGEIRQGLVQF-DTTLSILNYIEKSFYKTASLIAAS-CKAAALLSD-ADEKDHNDF---YLYGKHL 207 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHhHHHHHHHHH-HHHHHHHcC-CCHHHHHHH---HHHHHHH
Confidence 3456777888888888887777753 345799999997665565432211 111 1222 344444443 4677889
Q ss_pred HHHHhhhcccCCC
Q 043404 380 SKIFRLQDDLGTS 392 (393)
Q Consensus 380 ~~i~RL~nDi~t~ 392 (393)
++...+.||+-.+
T Consensus 208 G~aFQi~DDilD~ 220 (323)
T CHL00151 208 GLAFQIIDDVLDI 220 (323)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999998643
No 20
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=25.55 E-value=3.8e+02 Score=26.81 Aligned_cols=85 Identities=20% Similarity=0.152 Sum_probs=59.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHh-cCCCccchHHHhhccCChHHHHHHH
Q 043404 302 DMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYL-SGTNPIIKKELEFLESNPDIVHWSS 380 (393)
Q Consensus 302 ~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~-~~g~~~t~e~~~w~~~~p~i~~~~~ 380 (393)
..+..+.+.+..+|..-...-.|..+. ||.++|++.-.-=+|...-.++..- .+.. .+++..+.+. ++-+..+
T Consensus 134 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~--~t~e~y~~~i~~KTa~L~~~a~~~ga~la~-~~~~~~~~l~---~~g~~lG 207 (322)
T COG0142 134 EAIKALAEAINGLCGGQALDLAFENKP--VTLEEYLRVIELKTAALFAAAAVLGAILAG-ADEELLEALE---DYGRNLG 207 (322)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHccCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HHHHHhh
Confidence 456778888999999999998887666 9999999987666664332221111 1111 3356666653 6788899
Q ss_pred HHHhhhcccCCC
Q 043404 381 KIFRLQDDLGTS 392 (393)
Q Consensus 381 ~i~RL~nDi~t~ 392 (393)
+..-+.||+-.+
T Consensus 208 laFQi~DDiLD~ 219 (322)
T COG0142 208 LAFQIQDDILDI 219 (322)
T ss_pred HHHHHHHHhhcC
Confidence 999999998653
No 21
>COG4860 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.77 E-value=1.1e+02 Score=27.61 Aligned_cols=59 Identities=24% Similarity=0.232 Sum_probs=39.1
Q ss_pred HHHHHHHHHH---HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHhh--cCCCCCHHHHhhhcccc
Q 043404 277 MKMCFLALYN---FVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYH--SKYTPKLEEYLENGLVS 343 (393)
Q Consensus 277 mki~f~al~~---~~~ei~~~~~~~~g~~~~~~lk~~w~~l~~ayl~EAkW~~--~~y~Pt~eEYl~n~~iS 343 (393)
-|-+|.+|.. |.-+|++.+.+++.+ ...+|++ +=|-|++|.. +|..|.-+=|..-.-++
T Consensus 26 ~rKl~~aLstgW~T~~eiee~iG~eg~R-aL~iLkk-------agmlEtqWr~p~~G~kPeKeYHtsYt~Vq 89 (170)
T COG4860 26 KRKLLLALSTGWITLPEIEEKIGKEGRR-ALLILKK-------AGMLETQWRTPSNGQKPEKEYHTSYTNVQ 89 (170)
T ss_pred HHHHHHHHhhcceeHHHHHHHhchhhHH-HHHHHHh-------hcchhheeeccCCCCCchhhhhhheeeEE
Confidence 3456666654 788999998888776 4566665 4577999985 57788744443333333
No 22
>PF08843 DUF1814: Nucleotidyl transferase of unknown function (DUF1814); InterPro: IPR014942 This large group of proteins are largely uncharacterised. Some are annotated as abortive infective proteins but support for this annotation could not be found.
Probab=24.75 E-value=1.6e+02 Score=26.69 Aligned_cols=95 Identities=15% Similarity=0.143 Sum_probs=52.0
Q ss_pred CCchhHHHHHHHHHHHHHh---------hhhhhcccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHHH
Q 043404 222 PQFAYCRRVLTISIALITV---------IDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNEFA 292 (393)
Q Consensus 222 P~~s~~Ri~~aK~~~l~tv---------iDD~yD~ygTleEl~~ft~av~RWD~~~~i~~LPeymki~f~al~~~~~ei~ 292 (393)
|-++...++..|+.++..- .-|+||.+-= .. .+...+-....+..++...+..-.
T Consensus 129 ~v~s~~~~~a~Kl~a~~~r~~~~~~~~r~RDl~Dl~~L-------~~---------~~~~~~~~~~~l~~~~~~~~~~~~ 192 (233)
T PF08843_consen 129 PVYSLEEILAEKLHALLDRSEGDPPRRRARDLYDLYYL-------AQ---------PISRDELDLEELREAFLAKFDRRG 192 (233)
T ss_pred eeCCHHHHHHHHHHHHHhcccccccccCCCCHHHHHHH-------Hh---------hccccccCHHHHHHHHHHHHHhcc
Confidence 7788999999999998772 3678885421 11 122222233344444433333321
Q ss_pred HHHHhcCCcchhHHH-HHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhh
Q 043404 293 YYVLKQQDFDMLLSI-KNAWLGLIQAYLVEAKWYHSKYTPKLEEYLEN 339 (393)
Q Consensus 293 ~~~~~~~g~~~~~~l-k~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n 339 (393)
....... ... ++.|.....++..--. ..+..|+|+++++|
T Consensus 193 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~~~~~~ 233 (233)
T PF08843_consen 193 RELLPRL-----LFLQREFWQRDYEAMRDALL--YAGDLPDFDDALAR 233 (233)
T ss_pred ccccccc-----ccccHHHHHHHHHHhHhhhh--ccCCCcCHHHHhcC
Confidence 1111111 111 5666666666654433 35778999999875
No 23
>PF14164 YqzH: YqzH-like protein
Probab=24.69 E-value=37 Score=26.33 Aligned_cols=19 Identities=37% Similarity=0.361 Sum_probs=15.4
Q ss_pred HHHhhhcCccccccccccc
Q 043404 76 FRLLRQHGYPVSQEVFSGF 94 (393)
Q Consensus 76 FRLLRqhGy~VS~DvF~~F 94 (393)
=+-|||.||+++++-+...
T Consensus 11 ~~~l~QYg~d~~~~pls~~ 29 (64)
T PF14164_consen 11 INCLRQYGYDVECMPLSDE 29 (64)
T ss_pred HHHHHHhCCcccCCCCCHH
Confidence 3579999999999877753
No 24
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=24.12 E-value=2.8e+02 Score=27.71 Aligned_cols=84 Identities=10% Similarity=0.043 Sum_probs=54.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhc--CCCccchHHHhhccCChHHHHHH
Q 043404 302 DMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLS--GTNPIIKKELEFLESNPDIVHWS 379 (393)
Q Consensus 302 ~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~--~g~~~t~e~~~w~~~~p~i~~~~ 379 (393)
.++..+-++...+|..-..+..|.. +..||.++|++...--+|.... ++..+| ++. .+++..+-+ -++-+..
T Consensus 129 ~~~~~~~~~~~~~~~Gq~~~~~~~~-~~~~~~~~Y~~~i~~KTa~L~~-~~~~~ga~~ag-~~~~~~~~l---~~~g~~l 202 (319)
T TIGR02748 129 RAHQILSHTIVEVCRGEIEQIKDKY-NFDQNLRTYLRRIKRKTALLIA-ASCQLGAIASG-ANEAIVKKL---YWFGYYV 202 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHcC-CCHHHHHHH---HHHHHHH
Confidence 3456677778888888888887753 4467999999887666665322 222222 222 244434433 3677888
Q ss_pred HHHHhhhcccCC
Q 043404 380 SKIFRLQDDLGT 391 (393)
Q Consensus 380 ~~i~RL~nDi~t 391 (393)
++...+.||+..
T Consensus 203 G~aFQI~DDilD 214 (319)
T TIGR02748 203 GMSYQITDDILD 214 (319)
T ss_pred HHHHHHHHHHHH
Confidence 999999999854
No 25
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=23.24 E-value=4.7e+02 Score=26.20 Aligned_cols=85 Identities=14% Similarity=0.045 Sum_probs=55.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhc--CCCccchHHHhhccCChHHHHHH
Q 043404 302 DMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLS--GTNPIIKKELEFLESNPDIVHWS 379 (393)
Q Consensus 302 ~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~--~g~~~t~e~~~w~~~~p~i~~~~ 379 (393)
.++..+.++...++..-..+..|.. +..||.++|++...--+|...- .++.+| ++. .+.+..+.+ -++-+..
T Consensus 130 ~~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~s~~~y~~~i~~KTa~lf~-~~~~~ga~lag-~~~~~~~~l---~~~g~~l 203 (323)
T PRK10888 130 KVLEVMSEAVNVIAEGEVLQLMNVN-DPDITEENYMRVIYSKTARLFE-AAAQCSGILAG-CTPEQEKGL---QDYGRYL 203 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHcC-CCHHHHHHH---HHHHHHH
Confidence 4566677778888888888887754 3458999999987776665422 222222 222 344444433 4677888
Q ss_pred HHHHhhhcccCCC
Q 043404 380 SKIFRLQDDLGTS 392 (393)
Q Consensus 380 ~~i~RL~nDi~t~ 392 (393)
++..-+.||+..+
T Consensus 204 G~aFQi~DD~ld~ 216 (323)
T PRK10888 204 GTAFQLIDDLLDY 216 (323)
T ss_pred HHHHHHHHHhhcc
Confidence 9999999998654
No 26
>PRK00630 nickel responsive regulator; Provisional
Probab=22.35 E-value=2e+02 Score=25.81 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=27.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 043404 273 LPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYH 326 (393)
Q Consensus 273 LPeymki~f~al~~~~~ei~~~~~~~~g~~~~~~lk~~w~~l~~ayl~EAkW~~ 326 (393)
||+.+ .+++...+...|..++. +++.+++|.|+.|.+|..
T Consensus 17 lp~~L----------l~~lD~~~~~~gy~sRS----e~Ir~~iR~~l~e~~~~~ 56 (148)
T PRK00630 17 LQQNL----------LDELDNRIIKNGYSSRS----ELVRDLIREKLVEDNWAE 56 (148)
T ss_pred cCHHH----------HHHHHHHHHHcCCCCHH----HHHHHHHHHHHHHhhhhc
Confidence 77766 44555444444444444 668889999999999975
No 27
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=21.70 E-value=36 Score=24.39 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=15.2
Q ss_pred HHHhhhcCcccccccccccc
Q 043404 76 FRLLRQHGYPVSQEVFSGFK 95 (393)
Q Consensus 76 FRLLRqhGy~VS~DvF~~F~ 95 (393)
+.-|+++|+++|+++++.+.
T Consensus 25 l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 25 LDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHHHHHcCcccCHHHHHHHH
Confidence 44458889999998887664
No 28
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=20.49 E-value=2.7e+02 Score=26.49 Aligned_cols=83 Identities=14% Similarity=0.100 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCC-ccchhHHHHHHHHhCCccC--cHHHHHHHHHHHHhcccccccccCChhhhhHHHHHhh
Q 043404 4 YKRRAEELKGKVKTAIKDVTE-PLDQLELIDNLQRLGLAYH--FEPEIRNILRNIHNHNKDYNWRKENLYATSLEFRLLR 80 (393)
Q Consensus 4 ~~~~~~~lk~~vr~~l~~~~d-~~~~l~lID~lqRLGI~~h--Fe~EI~~~L~~i~~~~~~~~~~~~dL~~~Al~FRLLR 80 (393)
++.+.++++.-+|.|..+..+ .-....++++|+.||=..- .+.+|..+|...-.. +..++=.+-.|+
T Consensus 14 ~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~~----------l~El~~~~~~L~ 83 (215)
T cd07604 14 DRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKALSREEEDLGAAFLKFSVF----------TKELAALFKNLM 83 (215)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 456788888888888876444 4457889999999993221 233577776443221 333444455677
Q ss_pred hcCccccccccccccc
Q 043404 81 QHGYPVSQEVFSGFKD 96 (393)
Q Consensus 81 qhGy~VS~DvF~~F~d 96 (393)
+|=-++-...+.+|..
T Consensus 84 ~~~~~~i~~pL~~f~k 99 (215)
T cd07604 84 QNLNNIIMFPLDSLLK 99 (215)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7655555555666643
No 29
>COG5123 TOA2 Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=20.37 E-value=54 Score=27.66 Aligned_cols=42 Identities=14% Similarity=0.092 Sum_probs=27.7
Q ss_pred hHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHc
Q 043404 106 FKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRAL 161 (393)
Q Consensus 106 ~~glL~LYeAS~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~~~~~~L~~~V~~aL 161 (393)
+.|+.+|||-|-++--=|++||+- .+. +.++| +|+.+|-...
T Consensus 1 v~~yYElYRrs~ig~~L~dalD~l-----------is~-g~isp--~lam~vLetF 42 (113)
T COG5123 1 VPGYYELYRRSMIGKVLEDALDEL-----------ISA-GVISP--NLAMHVLETF 42 (113)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHH-----------Hhc-CCcCH--HHHHHHHHHh
Confidence 358899999998764445666652 323 56777 7777665443
Done!