Query 043404
Match_columns 393
No_of_seqs 150 out of 766
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 07:41:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043404.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043404hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 1E-128 4E-133 1014.0 40.8 383 2-393 46-457 (554)
2 3m00_A Aristolochene synthase; 100.0 2E-128 8E-133 1010.6 39.5 381 2-393 42-452 (550)
3 3n0f_A Isoprene synthase; terp 100.0 7E-129 2E-133 1016.5 34.6 386 2-393 40-455 (555)
4 2ong_A 4S-limonene synthase; m 100.0 1E-123 4E-128 978.5 39.9 386 2-393 27-446 (543)
5 2j5c_A 1,8-cineole synthase; t 100.0 3E-123 1E-127 978.7 36.5 382 3-393 61-473 (569)
6 1n1b_A (+)-bornyl diphosphate 100.0 1E-122 4E-127 971.8 39.8 385 2-393 31-453 (549)
7 3s9v_A Abietadiene synthase, c 100.0 7E-116 2E-120 949.0 35.7 366 23-393 268-688 (785)
8 3p5p_A Taxadiene synthase; cla 100.0 3E-115 9E-120 942.1 36.5 366 23-393 244-657 (764)
9 3sdr_A Alpha-bisabolene syntha 100.0 2E-115 6E-120 949.3 34.7 366 23-393 296-719 (817)
10 3pya_A ENT-copalyl diphosphate 100.0 1.3E-96 5E-101 790.2 32.2 360 5-393 220-654 (727)
11 1di1_A Aristolochene synthase; 100.0 2.5E-32 8.5E-37 263.9 13.4 165 213-393 46-211 (300)
12 1ps1_A Pentalenene synthase; a 100.0 4.2E-32 1.5E-36 266.9 10.3 171 214-393 51-225 (337)
13 3bny_A Aristolochene synthase; 100.0 3.1E-31 1E-35 259.1 11.6 164 214-393 61-225 (320)
14 3kb9_A EPI-isozizaene synthase 99.9 3.6E-28 1.2E-32 244.7 7.7 173 214-393 91-267 (382)
15 3v1v_A 2-MIB synthase, 2-methy 99.6 3.2E-16 1.1E-20 160.3 9.5 171 215-393 161-344 (433)
16 1yyq_A Trichodiene synthase; t 94.6 0.06 2E-06 53.8 7.4 154 219-392 76-230 (374)
17 1pd3_A Nonstructural protein N 56.3 8.1 0.00028 27.7 2.8 33 6-38 16-48 (58)
18 4dhi_B Ubiquitin thioesterase 53.4 1.5E+02 0.005 28.2 12.0 95 250-345 104-210 (284)
19 3lmd_A Geranylgeranyl pyrophos 43.2 46 0.0016 32.6 7.0 82 302-390 160-243 (360)
20 2q80_A Geranylgeranyl pyrophos 35.9 1.3E+02 0.0046 28.3 8.8 81 302-390 111-192 (301)
21 1c07_A Protein (epidermal grow 33.1 1.5E+02 0.0053 22.2 7.9 62 22-89 23-86 (95)
22 1fi6_A EH domain protein REPS1 33.0 1.2E+02 0.0042 22.5 6.7 73 12-89 8-84 (92)
23 3nf2_A Putative polyprenyl syn 32.6 92 0.0031 30.3 7.2 82 303-390 144-227 (352)
24 2zfy_A Ubiquitin thioesterase 31.0 3E+02 0.01 24.9 10.1 90 250-342 70-172 (234)
25 3rmg_A Octaprenyl-diphosphate 30.1 1.4E+02 0.0047 28.7 7.9 87 301-392 132-219 (334)
26 1qjt_A EH1, epidermal growth f 29.8 1.5E+02 0.0051 22.7 6.7 75 13-92 11-89 (99)
27 3oyr_A Trans-isoprenyl diphosp 27.7 1.5E+02 0.0051 28.7 7.7 85 302-392 151-237 (345)
28 3ipi_A Geranyltranstransferase 27.5 1.3E+02 0.0045 28.4 7.1 82 302-390 127-210 (295)
29 1tff_A Ubiquitin thiolesterase 27.4 3.5E+02 0.012 24.5 10.7 94 250-344 67-171 (234)
30 3aqb_B Component B of hexapren 26.2 1.6E+02 0.0056 27.9 7.6 83 302-390 130-214 (325)
31 2e8v_A Geranylgeranyl pyrophos 26.2 1.3E+02 0.0045 28.9 7.0 83 303-390 132-217 (340)
32 3mzv_A Decaprenyl diphosphate 24.7 2.4E+02 0.0081 27.1 8.5 85 301-391 138-224 (341)
33 4dhd_A Polyprenyl synthetase; 23.2 1.3E+02 0.0045 29.2 6.4 84 302-390 132-228 (358)
34 3pko_A Geranylgeranyl pyrophos 22.4 1.8E+02 0.0062 27.9 7.2 82 303-390 144-227 (334)
35 3pt8_A Hemoglobin II; oxygen c 21.2 3.4E+02 0.012 22.1 8.2 69 237-316 70-138 (152)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=1.1e-128 Score=1013.96 Aligned_cols=383 Identities=37% Similarity=0.642 Sum_probs=368.7
Q ss_pred hhHHHHHHHHHHHHHHHHhh-cCCccchhHHHHHHHHhCCccCcHHHHHHHHHHHHhcccccccccCChhhhhHHHHHhh
Q 043404 2 ETYKRRAEELKGKVKTAIKD-VTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNKDYNWRKENLYATSLEFRLLR 80 (393)
Q Consensus 2 ~~~~~~~~~lk~~vr~~l~~-~~d~~~~l~lID~lqRLGI~~hFe~EI~~~L~~i~~~~~~~~~~~~dL~~~Al~FRLLR 80 (393)
+.+.+|+++||++||+||.+ ..|++++|+|||+||||||+|||++||+++|++||++ .... ..||++|||+|||||
T Consensus 46 ~~~~~~~e~Lk~eVr~~l~~~~~~~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~-~~~~--~~dl~~~al~FRlLR 122 (554)
T 3g4d_A 46 AETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHN-NNDA--ENDLYTTSIRFRLLR 122 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHS-CCCT--TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhc-cCCC--CCCHHHHHHHHHHHH
Confidence 45789999999999999975 5799999999999999999999999999999999985 2211 269999999999999
Q ss_pred hcCcccccccccccccCCccc---cccchHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhccCCCCcchhHHHHH
Q 043404 81 QHGYPVSQEVFSGFKDDKVGF---ICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQA 157 (393)
Q Consensus 81 qhGy~VS~DvF~~F~d~~G~F---~~~d~~glL~LYeAS~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~~~~~~L~~~V 157 (393)
||||+||||||++|+|++|+| +.+|++||||||||||+++|||+|||+|+.||++||++.+ +.+++ +|+++|
T Consensus 123 ~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~---~~~~~--~l~~~V 197 (554)
T 3g4d_A 123 EHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAV---ASLDH--PLSEEV 197 (554)
T ss_dssp HTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHS---TTCCT--THHHHH
T ss_pred hcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHH---hccCc--hHHHHH
Confidence 999999999999999999999 7899999999999999999999999999999999999987 55667 899999
Q ss_pred HHHcCCCccCCchhhHHhhhHHHhhccccccHHHHHHHhhhhHHHHHHhHHHHHHHHh----------------------
Q 043404 158 KRALELPLHWKVPMLEARWFIHVYEKREDKNHLLLELAKLEFNTLQAIYQEELKDISG---------------------- 215 (393)
Q Consensus 158 ~~aL~~P~~~~~~Rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~lsr---------------------- 215 (393)
+|||++|||+++||+|||+||++|++++++|+.||||||+|||+||++||+||++++|
T Consensus 198 ~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~y 277 (554)
T 3g4d_A 198 SHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGY 277 (554)
T ss_dssp HHHHHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHH
T ss_pred HHHhCCCccCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999
Q ss_pred ---hccccCCCchhHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHHH
Q 043404 216 ---MGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNEFA 292 (393)
Q Consensus 216 ---~~~~fEP~~s~~Ri~~aK~~~l~tviDD~yD~ygTleEl~~ft~av~RWD~~~~i~~LPeymki~f~al~~~~~ei~ 292 (393)
+|++|||+||.+|++|||+++|+|++||+||+|||+|||++||+||+|||++ ++++||+|||+||.+|+|++|||+
T Consensus 278 fw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~-~~~~LPeymK~~f~al~~~~~e~~ 356 (554)
T 3g4d_A 278 FWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIK-CIDEIPEYMKPSYKALLDVYEEMV 356 (554)
T ss_dssp HHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGG-GGGGSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCcc-ccccCcHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhcCCCccchHHHhhccCC
Q 043404 293 YYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESN 372 (393)
Q Consensus 293 ~~~~~~~g~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~~g~~~t~e~~~w~~~~ 372 (393)
+++.++||+++++|++++|+++|+||++||||+++||+||+||||+||.+|+|++++++++++|||+.+|+|+++|+.++
T Consensus 357 ~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~ 436 (554)
T 3g4d_A 357 QLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASD 436 (554)
T ss_dssp HHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTC
T ss_pred HHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCCCHHHHHhcccc
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred hHHHHHHHHHHhhhcccCCCC
Q 043404 373 PDIVHWSSKIFRLQDDLGTSS 393 (393)
Q Consensus 373 p~i~~~~~~i~RL~nDi~t~~ 393 (393)
|+|++++++|+||+|||+||+
T Consensus 437 p~i~~~~~~I~RL~NDI~S~k 457 (554)
T 3g4d_A 437 PKIIQASTIICRFMDDVAEHK 457 (554)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccchhh
Confidence 999999999999999999975
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=2.5e-128 Score=1010.60 Aligned_cols=381 Identities=38% Similarity=0.660 Sum_probs=366.3
Q ss_pred hhHHHHHHHHHHHHHHHHhh-cCCccchhHHHHHHHHhCCccCcHHHHHHHHHHHHhcccccccccCChhhhhHHHHHhh
Q 043404 2 ETYKRRAEELKGKVKTAIKD-VTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNKDYNWRKENLYATSLEFRLLR 80 (393)
Q Consensus 2 ~~~~~~~~~lk~~vr~~l~~-~~d~~~~l~lID~lqRLGI~~hFe~EI~~~L~~i~~~~~~~~~~~~dL~~~Al~FRLLR 80 (393)
+.+.+|+++||++||+||.+ ..+++++|+|||+||||||+|||++||+++|++||++ +.. ..||++|||+|||||
T Consensus 42 ~~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~-~~~---~~dl~~~al~FRLLR 117 (550)
T 3m00_A 42 EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ-NSN---CNDLCTSALQFRLLR 117 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHH-CCC---CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHh-ccc---CCCHHHHHHHHHHHH
Confidence 35778999999999999975 5789999999999999999999999999999999998 332 379999999999999
Q ss_pred hcCcccccccccccccCCccc---cccchHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhccCCCCcchhHHHHH
Q 043404 81 QHGYPVSQEVFSGFKDDKVGF---ICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQA 157 (393)
Q Consensus 81 qhGy~VS~DvF~~F~d~~G~F---~~~d~~glL~LYeAS~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~~~~~~L~~~V 157 (393)
||||+||||||++|+|++|+| +.+|++||||||||||+++|||+|||+|+.||++||++.+ +++++ +|+++|
T Consensus 118 ~hGy~VS~dvf~~F~~~~G~F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~---~~~~~--~l~~~V 192 (550)
T 3m00_A 118 QHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAA---PHLKS--PLREQV 192 (550)
T ss_dssp HTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCGGGTTHHHHHHHHHHHHG---GGCCT--THHHHH
T ss_pred hcCCCCChHHhhhccccCCCccccchhchHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH---hccCc--cHHHHH
Confidence 999999999999999999999 7899999999999999999999999999999999999987 44566 899999
Q ss_pred HHHcCCCccCCchhhHHhhhHH-HhhccccccHHHHHHHhhhhHHHHHHhHHHHHHHHh---------------------
Q 043404 158 KRALELPLHWKVPMLEARWFIH-VYEKREDKNHLLLELAKLEFNTLQAIYQEELKDISG--------------------- 215 (393)
Q Consensus 158 ~~aL~~P~~~~~~Rlear~yI~-~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~lsr--------------------- 215 (393)
+|||++|||+++||+|||+||+ +|++++++|+.||||||+|||+||++||+||++++|
T Consensus 193 ~~aL~~P~~~~l~rlear~yI~~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~l~rWwk~~~l~~~l~faRdr~ve~ 272 (550)
T 3m00_A 193 THALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVEC 272 (550)
T ss_dssp HHHHHSCSTTSCHHHHHHHHHHHTGGGCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTSCCCHHHH
T ss_pred HHHhCCCccCCchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCccccCcHHHhHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999
Q ss_pred ----hccccCCCchhHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHH
Q 043404 216 ----MGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNEF 291 (393)
Q Consensus 216 ----~~~~fEP~~s~~Ri~~aK~~~l~tviDD~yD~ygTleEl~~ft~av~RWD~~~~i~~LPeymki~f~al~~~~~ei 291 (393)
+|++|||+||.+|+++||+++|+|++||+||+|||+|||++||+||+|||++ ++++||+|||+||.+|+|++|||
T Consensus 273 yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~-~~~~LPeymK~~f~al~~~~~E~ 351 (550)
T 3m00_A 273 YFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EIDRLPDYMKISYKAILDLYKDY 351 (550)
T ss_dssp HHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCGG-GGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhcCcc-ccccCcHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhcCCCccchHHHhhccC
Q 043404 292 AYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLES 371 (393)
Q Consensus 292 ~~~~~~~~g~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~~g~~~t~e~~~w~~~ 371 (393)
++++.++||+++++|++++|+++|+||++||||+++||+||+||||+||.+|+|++++++++|+|+ +.+|+|+++|+.+
T Consensus 352 ~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~f~g~-~~lt~e~~e~~~~ 430 (550)
T 3m00_A 352 EKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGM-KSATEQDFEWLSK 430 (550)
T ss_dssp HHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHHHHTC-TTCCHHHHHHHHT
T ss_pred HHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHcC-CCCcHHHHHhhcc
Confidence 999999988999999999999999999999999999999999999999999999999999999988 7799999999989
Q ss_pred ChHHHHHHHHHHhhhcccCCCC
Q 043404 372 NPDIVHWSSKIFRLQDDLGTSS 393 (393)
Q Consensus 372 ~p~i~~~~~~i~RL~nDi~t~~ 393 (393)
+|++++++++|+||+|||+||+
T Consensus 431 ~p~i~~~~~~I~RL~NDI~S~k 452 (550)
T 3m00_A 431 NPKILEASVIICRVIDDTATYE 452 (550)
T ss_dssp CCHHHHHHHHHHHHHHHHHSHH
T ss_pred cHHHHHHHhhhheeeccchhHH
Confidence 9999999999999999999974
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=6.8e-129 Score=1016.47 Aligned_cols=386 Identities=50% Similarity=0.814 Sum_probs=366.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhcC-CccchhHHHHHHHHhCCccCcHHHHHHHHHHHHhcccc-cccccCChhhhhHHHHHh
Q 043404 2 ETYKRRAEELKGKVKTAIKDVT-EPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNKD-YNWRKENLYATSLEFRLL 79 (393)
Q Consensus 2 ~~~~~~~~~lk~~vr~~l~~~~-d~~~~l~lID~lqRLGI~~hFe~EI~~~L~~i~~~~~~-~~~~~~dL~~~Al~FRLL 79 (393)
+.+.+|+++||++||+||.+.. +++++|+|||+||||||+|||++||+++|++||+. .. ......||++|||+||||
T Consensus 40 ~~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~-~~~~~~~~~DL~~~Al~FRLL 118 (555)
T 3n0f_A 40 EVYKDKAKKLEAEVRREINNEKAEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSS-GGFDGVTKTSLHATALSFRLL 118 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTCGGGSHHHHHHHHHHHHHT-CHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhh-ccccccccCCHHHHHHHHHHH
Confidence 4578999999999999997666 89999999999999999999999999999999974 11 001137999999999999
Q ss_pred hhcCcccccccccccccCCccc---cccchHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhccCCCCcchhHHHH
Q 043404 80 RQHGYPVSQEVFSGFKDDKVGF---ICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQ 156 (393)
Q Consensus 80 RqhGy~VS~DvF~~F~d~~G~F---~~~d~~glL~LYeAS~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~~~~~~L~~~ 156 (393)
|||||+||||||++|+|++|+| +.+|++||||||||||+++|||+|||+|++||++||++.+. +.+++ +|+++
T Consensus 119 R~hGy~VS~dvF~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~~gE~iLdeA~~Fs~~~L~~~~~--~~~~~--~l~~~ 194 (555)
T 3n0f_A 119 RQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSE--EKIGK--ELAEQ 194 (555)
T ss_dssp HHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHTCCH--HHHCH--HHHHH
T ss_pred HhcCCCcChHHHhcccccCccchhhhhhhhHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHh--ccCCc--hHHHH
Confidence 9999999999999999999999 78999999999999999999999999999999999998652 13355 89999
Q ss_pred HHHHcCCCccCCchhhHHhhhHHHhhccccccHHHHHHHhhhhHHHHHHhHHHHHHHHh---------------------
Q 043404 157 AKRALELPLHWKVPMLEARWFIHVYEKREDKNHLLLELAKLEFNTLQAIYQEELKDISG--------------------- 215 (393)
Q Consensus 157 V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~lsr--------------------- 215 (393)
|+|||++|||+++||||||+||++|++++++|+.||||||||||+||++||+||++++|
T Consensus 195 V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~~l~faRdr~ve~ 274 (555)
T 3n0f_A 195 VNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIES 274 (555)
T ss_dssp HHHHHHSCTTTSCHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHH
T ss_pred HHHHhcCCcccCchHHHHHHHHHHhcccccccHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHcCCcccCCchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ----hccccCCCchhHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHH
Q 043404 216 ----MGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNEF 291 (393)
Q Consensus 216 ----~~~~fEP~~s~~Ri~~aK~~~l~tviDD~yD~ygTleEl~~ft~av~RWD~~~~i~~LPeymki~f~al~~~~~ei 291 (393)
+|++|||+||.+|++|||+++|+|++||+||+|||+|||++||+||+|||++ ++++||+|||+||.+|+|++|||
T Consensus 275 yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygt~eEl~~ft~ai~RWD~~-~~~~LPeymk~~~~aL~~~~~e~ 353 (555)
T 3n0f_A 275 FYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVN-AINDLPDYMKLCFLALYNTINEI 353 (555)
T ss_dssp HHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCGG-GGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCccchHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHhcCcc-ccccCcHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhcCCCccchHHHhhccC
Q 043404 292 AYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLES 371 (393)
Q Consensus 292 ~~~~~~~~g~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~~g~~~t~e~~~w~~~ 371 (393)
++++.++||+++++|++++|+++|+||++||||+++||+||+||||+||.+|+|++++++++|++||+.+|+|+++|+.+
T Consensus 354 ~~~~~~~~g~~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~ 433 (555)
T 3n0f_A 354 AYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQK 433 (555)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHHCSSCCHHHHHHHHT
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhcCCCCCHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ChHHHHHHHHHHhhhcccCCCC
Q 043404 372 NPDIVHWSSKIFRLQDDLGTSS 393 (393)
Q Consensus 372 ~p~i~~~~~~i~RL~nDi~t~~ 393 (393)
+|++++++++|+||+|||+||+
T Consensus 434 ~p~i~~~~~~i~RL~NDi~S~~ 455 (555)
T 3n0f_A 434 YHDIISRPSHIFRLCNDLASAS 455 (555)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccchhhh
Confidence 9999999999999999999874
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=1.2e-123 Score=978.51 Aligned_cols=386 Identities=44% Similarity=0.741 Sum_probs=370.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHhCCccCcHHHHHHHHHHHHhccccc-c---cc-cCChhhhhHHH
Q 043404 2 ETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNKDY-N---WR-KENLYATSLEF 76 (393)
Q Consensus 2 ~~~~~~~~~lk~~vr~~l~~~~d~~~~l~lID~lqRLGI~~hFe~EI~~~L~~i~~~~~~~-~---~~-~~dL~~~Al~F 76 (393)
+.+.++++.||++||+|+.+..|++++|+|||+||||||+|||++||+++|++||++| .. . .. ..||++|||+|
T Consensus 27 ~~~~~~~~~Lk~~V~~~~~~~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~-~~~~~~~~~~~~dl~~~al~F 105 (543)
T 2ong_A 27 DKHVIRASELVTLVKMELEKETDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDH-HYYKNPFPKEERDLYSTSLAF 105 (543)
T ss_dssp THHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTGGGTTHHHHHHHHHHHHHTT-TCCCSSCCCCCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhh-cccccccccccCCHHHHHHHH
Confidence 3578999999999999998767999999999999999999999999999999999984 21 1 11 46999999999
Q ss_pred HHhhhcCcccccccccccccCCccc---cccchHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhccCCC-Ccchh
Q 043404 77 RLLRQHGYPVSQEVFSGFKDDKVGF---ICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSK-EEDVF 152 (393)
Q Consensus 77 RLLRqhGy~VS~DvF~~F~d~~G~F---~~~d~~glL~LYeAS~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~-~~~~~ 152 (393)
||||||||+||||||++|||++|+| +++||+||||||||||+++|||+|||||++||++||++++. ..+ ++ +
T Consensus 106 RlLR~hGy~vs~dvf~~Fk~~~g~F~~~l~~d~~glL~Ly~As~l~~~gE~iL~eA~~Ft~~~L~~~~~--~~~~~~--~ 181 (543)
T 2ong_A 106 RLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVN--EGGVDG--D 181 (543)
T ss_dssp HHHHHTTCCCCGGGGGGGBCTTSSBCTTGGGCHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHH--SSCSSS--H
T ss_pred HHHHHcCCCccHHHHhcccCCCCCccchhhhccHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHh--ccCCCC--c
Confidence 9999999999999999999999999 78999999999999999999999999999999999999982 224 67 8
Q ss_pred HHHHHHHHcCCCccCCchhhHHhhhHHHhhccccccHHHHHHHhhhhHHHHHHhHHHHHHHHh-----------------
Q 043404 153 VAEQAKRALELPLHWKVPMLEARWFIHVYEKREDKNHLLLELAKLEFNTLQAIYQEELKDISG----------------- 215 (393)
Q Consensus 153 L~~~V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~lsr----------------- 215 (393)
|+++|+|||++|||+++||||||+||++|++++++|+.||||||+|||+||++||+||++++|
T Consensus 182 l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~kl~faRdR 261 (543)
T 2ong_A 182 LLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFARDR 261 (543)
T ss_dssp HHHHHHHHHHSCTTTSCSTTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSCSSCCC
T ss_pred HHHHHHHHHhhhHhccchHHHHHHHHHHhccCccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------hccccCCCchhHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHH
Q 043404 216 --------MGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNF 287 (393)
Q Consensus 216 --------~~~~fEP~~s~~Ri~~aK~~~l~tviDD~yD~ygTleEl~~ft~av~RWD~~~~i~~LPeymki~f~al~~~ 287 (393)
+|++|||+||.+|+++||++++++++||+||+|||+||++.||+||+|||++ +++.||+|||+||.+|+++
T Consensus 262 ~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~litviDD~fD~~gt~eEl~~ft~ai~rWD~~-~~~~lPeymk~~~~aL~~~ 340 (543)
T 2ong_A 262 LVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDIN-SIDQLPDYMQLCFLALNNF 340 (543)
T ss_dssp HHHHHHTHHHHTCSTTCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTTCSS-TTTTSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCcc-ccccCCchhHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhcCCCccchHHHh
Q 043404 288 VNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELE 367 (393)
Q Consensus 288 ~~ei~~~~~~~~g~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~~g~~~t~e~~~ 367 (393)
++|+++++.+.||+++++|++++|+++++||++||||+++||+||++|||+||.+|+|+++++++++++||+.+|+|+++
T Consensus 341 ~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~~t~e~~e 420 (543)
T 2ong_A 341 VDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVD 420 (543)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHHHSSCCCHHHHH
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCChHHHHHHHHHHhhhcccCCCC
Q 043404 368 FLESNPDIVHWSSKIFRLQDDLGTSS 393 (393)
Q Consensus 368 w~~~~p~i~~~~~~i~RL~nDi~t~~ 393 (393)
|+.++|++++++++|+||+|||+||+
T Consensus 421 ~~~~~p~i~~~~~~i~RL~NDi~S~~ 446 (543)
T 2ong_A 421 SLYKYHDLVRWSSFVLRLADDLGTSV 446 (543)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHSSH
T ss_pred HhcccHHHHHHHHHHHHHhcccchhh
Confidence 99999999999999999999999984
No 5
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=3.4e-123 Score=978.72 Aligned_cols=382 Identities=45% Similarity=0.747 Sum_probs=365.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHhCCccCcHHHHHHHHHHHH-hcccccccccCChhhhhHHHHHhhh
Q 043404 3 TYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIH-NHNKDYNWRKENLYATSLEFRLLRQ 81 (393)
Q Consensus 3 ~~~~~~~~lk~~vr~~l~~~~d~~~~l~lID~lqRLGI~~hFe~EI~~~L~~i~-~~~~~~~~~~~dL~~~Al~FRLLRq 81 (393)
.+.++++.||++||+|+.+..|++++|+|||+||||||+|||++||+++|++|| ++ ... ...||++|||+||||||
T Consensus 61 ~~~~~~~~Lk~~Vr~~~~~~~d~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~-~~~--~~~Dl~~~al~FRlLR~ 137 (569)
T 2j5c_A 61 KHLMRAAGMIDQVKMMLQEEVDSIRRLELIDDLRRLGISCHFEREIVEILNSKYYTN-NEI--DERDLYSTALRFRLLRQ 137 (569)
T ss_dssp -CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTSS-CCS--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhc-cCc--ccCChhhhhHHhHHHHh
Confidence 467899999999999998767999999999999999999999999999999999 76 322 24799999999999999
Q ss_pred cCcccccccccccccCCc-cc---cccchHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhccCCC-CcchhHHHH
Q 043404 82 HGYPVSQEVFSGFKDDKV-GF---ICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSK-EEDVFVAEQ 156 (393)
Q Consensus 82 hGy~VS~DvF~~F~d~~G-~F---~~~d~~glL~LYeAS~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~-~~~~~L~~~ 156 (393)
|||+||||||++|||++| +| +++||+||||||||||+++|||+|||||++||++||++++ .++ ++ +|+++
T Consensus 138 hGy~Vs~dvF~~Fkd~~G~~F~~~l~~dv~glL~LY~As~l~~~gE~iLdeA~~Ft~~~L~~~~---~~~~~~--~l~~~ 212 (569)
T 2j5c_A 138 YDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRV---LVDKDI--NLLSS 212 (569)
T ss_dssp TTCCCCGGGGGGGBCSSSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTTSSCC-------CH--HHHHH
T ss_pred cCCCcCHHHHhcccCCCCCccccchhhccHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH---hhcCCC--cHHHH
Confidence 999999999999999999 99 7899999999999999999999999999999999999887 444 66 89999
Q ss_pred HHHHcCCCccCCchhhHHhhhHHHhhccccccHHHHHHHhhhhHHHHHHhHHHHHHHHh---------------------
Q 043404 157 AKRALELPLHWKVPMLEARWFIHVYEKREDKNHLLLELAKLEFNTLQAIYQEELKDISG--------------------- 215 (393)
Q Consensus 157 V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~lsr--------------------- 215 (393)
|+|||++|||+++||||||+||++|++++++|+.||||||||||+||++||+||++++|
T Consensus 213 V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~l~rWwke~~L~~kl~faRdR~ve~ 292 (569)
T 2j5c_A 213 IERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVEC 292 (569)
T ss_dssp HHHHHHSCGGGCCSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC--CCCHHHH
T ss_pred HHHHhcCccccCcHHHHHHHHHHHhccCccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ----hccccCCCchhHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHH
Q 043404 216 ----MGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNEF 291 (393)
Q Consensus 216 ----~~~~fEP~~s~~Ri~~aK~~~l~tviDD~yD~ygTleEl~~ft~av~RWD~~~~i~~LPeymki~f~al~~~~~ei 291 (393)
+|++|||+||.+|+++||++++++++||+||+|||+|||+.||+||+|||.+ +++.||+|||+||.+|+++++||
T Consensus 293 Yfw~~a~~feP~~S~~Rl~~aK~~~litviDD~fD~ygT~eEl~~ft~ai~rWD~~-~~~~lPeymk~~~~aL~~~~~ei 371 (569)
T 2j5c_A 293 YYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIE-SMKQLPPYMQICYLALFNFVNEM 371 (569)
T ss_dssp HHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSSG-GGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCcc-ccccCCchhHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhcCCCccchHHHhhccC
Q 043404 292 AYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLES 371 (393)
Q Consensus 292 ~~~~~~~~g~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~~g~~~t~e~~~w~~~ 371 (393)
++++.+.||+++++|++++|+++++||++||||+++||+||++|||+||.+|+|+++++++++++||+.+|+|+++|+.+
T Consensus 372 ~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~~g~~lt~e~~e~l~~ 451 (569)
T 2j5c_A 372 AYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHK 451 (569)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHHSCSSCCHHHHHHHTT
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhhhcccCCCC
Q 043404 372 NPDIVHWSSKIFRLQDDLGTSS 393 (393)
Q Consensus 372 ~p~i~~~~~~i~RL~nDi~t~~ 393 (393)
+|++++++++|+||+|||+|++
T Consensus 452 ~p~i~~~~~~i~RL~NDI~S~~ 473 (569)
T 2j5c_A 452 YHDIVRASCTILRLADDMGTSL 473 (569)
T ss_dssp TCHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHhcccchhh
Confidence 9999999999999999999985
No 6
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=1.1e-122 Score=971.77 Aligned_cols=385 Identities=44% Similarity=0.743 Sum_probs=366.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHhCCccCcHHHHHHHHHHHHhccccc--cc--ccCChhhhhHHHH
Q 043404 2 ETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNKDY--NW--RKENLYATSLEFR 77 (393)
Q Consensus 2 ~~~~~~~~~lk~~vr~~l~~~~d~~~~l~lID~lqRLGI~~hFe~EI~~~L~~i~~~~~~~--~~--~~~dL~~~Al~FR 77 (393)
+.+.++++.||++||+|+.+..|++++|+|||+||||||+|||++||+++|++||+++ .. .. ...||++|||+||
T Consensus 31 ~~~~~~~~~Lk~~V~~~~~~~~d~~~~l~lvD~lqrLGi~~hF~~EI~~~L~~i~~~~-~~~~~~~~~~~dl~~~al~FR 109 (549)
T 1n1b_A 31 ERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEH-KCFHNNEVEKMDLYFTALGFR 109 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHC-HHHHHCCCCSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcccCHHHHHHhHHHHHhCCchhhhHHHHHHHHHHHHhhh-ccccccccccCChhhchhhhh
Confidence 3578999999999999998767999999999999999999999999999999999873 21 11 1369999999999
Q ss_pred HhhhcCcccccccccccccCCc-cc---cccchHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhccCC---C-Cc
Q 043404 78 LLRQHGYPVSQEVFSGFKDDKV-GF---ICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNS---K-EE 149 (393)
Q Consensus 78 LLRqhGy~VS~DvF~~F~d~~G-~F---~~~d~~glL~LYeAS~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~---~-~~ 149 (393)
|||||||+||||||++|||++| +| +++|++||||||||||+++|||+|||||++||++||++.+ .. + ++
T Consensus 110 lLR~hGy~Vs~dvf~~Fk~~~g~~F~~~l~~d~~glL~LY~As~l~~~gE~iL~eA~~Ft~~~L~~~~---~~~~~~~~~ 186 (549)
T 1n1b_A 110 LLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKL---DEGGNEIDE 186 (549)
T ss_dssp HHHHTTCCCCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHT---C------CH
T ss_pred HHHhcCCCcCHHHHhhccCCCCCccchhhhhccHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH---hcccccCCC
Confidence 9999999999999999999999 99 7899999999999999999999999999999999999997 33 4 66
Q ss_pred chhHHHHHHHHcCCCccCCchhhHHhhhHHHhhccccccHHHHHHHhhhhHHHHHHhHHHHHHHHh--------------
Q 043404 150 DVFVAEQAKRALELPLHWKVPMLEARWFIHVYEKREDKNHLLLELAKLEFNTLQAIYQEELKDISG-------------- 215 (393)
Q Consensus 150 ~~~L~~~V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~lsr-------------- 215 (393)
+|+++|+|||++|||+++||||||+||++|++++++|+.||||||+|||+||++||+||++++|
T Consensus 187 --~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwke~~l~~kl~fa 264 (549)
T 1n1b_A 187 --NLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFV 264 (549)
T ss_dssp --HHHHHHHHHHHSCGGGCCTTTSHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTS
T ss_pred --cHHHHHHHHhcCchhcCchHHHHHHHHHHhcccccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCcccccHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----------hccccCCCchhHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHH
Q 043404 216 -----------MGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLAL 284 (393)
Q Consensus 216 -----------~~~~fEP~~s~~Ri~~aK~~~l~tviDD~yD~ygTleEl~~ft~av~RWD~~~~i~~LPeymki~f~al 284 (393)
+|++|||++|.+|+++||++++++++||+||+|||+||++.||+||+|||.+ +++.||+|||+||.+|
T Consensus 265 RdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~l~tviDD~yD~~gt~eEl~~ft~ai~rWD~~-~~~~lPeymk~~~~aL 343 (549)
T 1n1b_A 265 RDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTE-SITRLPYYMQLCYWGV 343 (549)
T ss_dssp CCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCSS-GGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCcc-ccccCccHHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhcCCCccchH
Q 043404 285 YNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKK 364 (393)
Q Consensus 285 ~~~~~ei~~~~~~~~g~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~~g~~~t~e 364 (393)
+++++|+++++.+.||+++++|++++|+++++||++||||+++||+||++|||+||.+|+|+++++++++++||+.+|+|
T Consensus 344 ~d~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~lt~e 423 (549)
T 1n1b_A 344 HNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDT 423 (549)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHHHHHHHcCCCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HhhccCChHHHHHHHHHHhhhcccCCCC
Q 043404 365 E-LEFLESNPDIVHWSSKIFRLQDDLGTSS 393 (393)
Q Consensus 365 ~-~~w~~~~p~i~~~~~~i~RL~nDi~t~~ 393 (393)
+ ++|+.++|++++++++|+||+|||+|++
T Consensus 424 ~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~ 453 (549)
T 1n1b_A 424 AVIDSLYQYHDILCLAGIILRLPDDLGTSY 453 (549)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHC---
T ss_pred HHHhhhcccHHHHHHHHHHHHHhcccchhh
Confidence 9 9999899999999999999999999985
No 7
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=6.8e-116 Score=949.05 Aligned_cols=366 Identities=34% Similarity=0.560 Sum_probs=347.1
Q ss_pred CCccchhHHHHHHHHhCCccCcHHHHHHHHHHHHhcccccc-------cccCChhhhhHHHHHhhhcCcccccccccccc
Q 043404 23 TEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNKDYN-------WRKENLYATSLEFRLLRQHGYPVSQEVFSGFK 95 (393)
Q Consensus 23 ~d~~~~l~lID~lqRLGI~~hFe~EI~~~L~~i~~~~~~~~-------~~~~dL~~~Al~FRLLRqhGy~VS~DvF~~F~ 95 (393)
.|++++|++||+||||||+|||++||+++|+++|++| ... +...||++|||+|||||||||+||||||++|+
T Consensus 268 ~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~-~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~ 346 (785)
T 3s9v_A 268 LDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHW-DERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFR 346 (785)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTC-CTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGB
T ss_pred CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHh-hhccccccccCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 5899999999999999999999999999999999985 221 12469999999999999999999999999999
Q ss_pred cCCccc------cccchHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhccC------CCCcchhHHHHHHHHcCC
Q 043404 96 DDKVGF------ICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSN------SKEEDVFVAEQAKRALEL 163 (393)
Q Consensus 96 d~~G~F------~~~d~~glL~LYeAS~l~~~gE~iLdeA~~fs~~~L~~~~~~~~------~~~~~~~L~~~V~~aL~~ 163 (393)
|++|+| ..+|++||||||||||+++|||+|||||++||++||++.+.. + .+++ +|+++|+|||++
T Consensus 347 d~~g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~-~~~~d~~~~~~--~L~~eV~~aL~~ 423 (785)
T 3s9v_A 347 DENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALEN-VDAFDKWAFKK--NIRGEVEYALKY 423 (785)
T ss_dssp CTTSCBCSSTTCCCCCHHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHTTT-CCTTCTTCSSS--CHHHHHHHHHHS
T ss_pred hcCCCeeeccccccccccccHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHhc-cccccccccCC--cHHHHHHHHhCC
Confidence 999999 268999999999999999999999999999999999998632 2 2456 899999999999
Q ss_pred CccCCchhhHHhhhHHHhhcccc------------ccHHHHHHHhhhhHHHHHHhHHHHHHHHh----------------
Q 043404 164 PLHWKVPMLEARWFIHVYEKRED------------KNHLLLELAKLEFNTLQAIYQEELKDISG---------------- 215 (393)
Q Consensus 164 P~~~~~~Rlear~yI~~Y~~~~~------------~n~~lLelAkldFn~~Q~~hq~EL~~lsr---------------- 215 (393)
|||+++||||||+||++|++++. +|+.||||||+|||+||++||+||++++|
T Consensus 424 P~~~~l~RleaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~l~faRdr 503 (785)
T 3s9v_A 424 PWHKSMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFTDLNFTRER 503 (785)
T ss_dssp CGGGCCHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCSSSCCC
T ss_pred ccccCchHHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCcCccHHHH
Confidence 99999999999999999998875 49999999999999999999999999999
Q ss_pred --------hccccCCCchhHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHH
Q 043404 216 --------MGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNF 287 (393)
Q Consensus 216 --------~~~~fEP~~s~~Ri~~aK~~~l~tviDD~yD~ygTleEl~~ft~av~RWD~~~~i~~LPeymki~f~al~~~ 287 (393)
+|++|||+||.+|++|||+++|+|++||+||+|||+|||++||+||+|||++ ++++||+|||+||.+|+++
T Consensus 504 ~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~-~~~~Lpeymk~~f~aL~~~ 582 (785)
T 3s9v_A 504 VTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLS-LVDQMPQQMKICFVGFYNT 582 (785)
T ss_dssp HHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSSS-SGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCch-hhhcCChhHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhcCCCccchHHHh
Q 043404 288 VNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELE 367 (393)
Q Consensus 288 ~~ei~~~~~~~~g~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~~g~~~t~e~~~ 367 (393)
+|||++++.+.+|+++++|++++|++++++|++||||+++||+||+||||+||.+|+|+++++++++++||+.+|+|+++
T Consensus 583 ~nei~~~~~~~~g~~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~G~~lt~e~~e 662 (785)
T 3s9v_A 583 FNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLS 662 (785)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCSSSCCCHHHHT
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHcCCCCCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCChHHHHHHHHHHhhhcccCCCC
Q 043404 368 FLESNPDIVHWSSKIFRLQDDLGTSS 393 (393)
Q Consensus 368 w~~~~p~i~~~~~~i~RL~nDi~t~~ 393 (393)
|+..+|+|+++++.|+||+|||+||+
T Consensus 663 ~~~~~~~l~~~~~~I~RL~NDi~S~k 688 (785)
T 3s9v_A 663 KIDRESRFLQLMGLTGRLVNDTKTYQ 688 (785)
T ss_dssp TTSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHhcccchhh
Confidence 98877999999999999999999874
No 8
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=2.8e-115 Score=942.05 Aligned_cols=366 Identities=32% Similarity=0.514 Sum_probs=344.9
Q ss_pred CCccchhHHHHHHHHhCCccCcHHHHHHHHHHHHhccccc-------ccccCChhhhhHHHHHhhhcCcccccccccccc
Q 043404 23 TEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNKDY-------NWRKENLYATSLEFRLLRQHGYPVSQEVFSGFK 95 (393)
Q Consensus 23 ~d~~~~l~lID~lqRLGI~~hFe~EI~~~L~~i~~~~~~~-------~~~~~dL~~~Al~FRLLRqhGy~VS~DvF~~F~ 95 (393)
.|++++|++||+||||||+|||++||+++|+++|++| .. .+...||++|||+|||||||||+||||||++|+
T Consensus 244 ~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~-~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~ 322 (764)
T 3p5p_A 244 IDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHW-SERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFK 322 (764)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTC-CTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGB
T ss_pred CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHh-hhcccccccCCCCCCHHHHHHHHHHHHhcCCCccHhHHHhhh
Confidence 5899999999999999999999999999999999984 22 112469999999999999999999999999999
Q ss_pred cCCccc------cccchHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHcCCCccCCc
Q 043404 96 DDKVGF------ICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKV 169 (393)
Q Consensus 96 d~~G~F------~~~d~~glL~LYeAS~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~~~~~~L~~~V~~aL~~P~~~~~ 169 (393)
|++|+| +.+|++||||||||||+++|||+|||||++||++||++.+.....+++ +|+++|+|||++|||+++
T Consensus 323 d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~--~L~~eV~~aL~~P~~~~l 400 (764)
T 3p5p_A 323 DENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNT--KLFKEIEYVVEYPWHMSI 400 (764)
T ss_dssp CTTSCBCSCTTCSCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHHTSCSSS--HHHHHHHHHHHSCGGGCC
T ss_pred cCCCCccccccccccccHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCc--cHHHHHHHHhcCchhccc
Confidence 999999 468999999999999999999999999999999999998743023567 899999999999999999
Q ss_pred hhhHHhhhHHHhhcccc------------ccHHHHHHHhhhhHHHHHHhHHHHHHHHh----------------------
Q 043404 170 PMLEARWFIHVYEKRED------------KNHLLLELAKLEFNTLQAIYQEELKDISG---------------------- 215 (393)
Q Consensus 170 ~Rlear~yI~~Y~~~~~------------~n~~lLelAkldFn~~Q~~hq~EL~~lsr---------------------- 215 (393)
||||||+||++|++++. +|+.||||||+|||+||++||+||++|+|
T Consensus 401 ~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~rWwk~~~l~~l~faRdr~ve~Yf 480 (764)
T 3p5p_A 401 PRLEARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMADINFTRHRVAEVYF 480 (764)
T ss_dssp HHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTTTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHhHHHhhhhceeHHhcCCCcCccHHHHHHHHHH
Confidence 99999999999998765 49999999999999999999999999998
Q ss_pred -hccccCCCchhHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHHHHH
Q 043404 216 -MGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNEFAYY 294 (393)
Q Consensus 216 -~~~~fEP~~s~~Ri~~aK~~~l~tviDD~yD~ygTleEl~~ft~av~RWD~~~~i~~LPeymki~f~al~~~~~ei~~~ 294 (393)
++. |||+||.+|++|||+++|+|++||+||+|||+|||++||+||+|||++ ++++||+|||+||.+|++++|||+++
T Consensus 481 w~~~-feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~-~~~~LPeymk~~f~aL~~~~~ei~~~ 558 (764)
T 3p5p_A 481 SSAT-FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTS-LLHEIPECMQTCFKVWFKLMEEVNND 558 (764)
T ss_dssp HTCC-CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSST-TGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-CCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCch-hhhcCchHHHHHHHHHHHHHHHHHHH
Confidence 333 999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhcCCCccchHHHhhccCChH
Q 043404 295 VLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPD 374 (393)
Q Consensus 295 ~~~~~g~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~~g~~~t~e~~~w~~~~p~ 374 (393)
+.+.||+++++|++++|++++++|++||||+++||+||+||||+||.+|+|+++++++++++||+.+|+|+++|+..+|+
T Consensus 559 ~~~~~g~~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~~G~~lt~e~~e~~~~~~~ 638 (764)
T 3p5p_A 559 VVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSN 638 (764)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHTSSSCCCGGGHHHHSTTSH
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHHcCCCCcHHHHhhhhhhHH
Confidence 99989999999999999999999999999999999999999999999999999888999999999999999999987799
Q ss_pred HHHHHHHHHhhhcccCCCC
Q 043404 375 IVHWSSKIFRLQDDLGTSS 393 (393)
Q Consensus 375 i~~~~~~i~RL~nDi~t~~ 393 (393)
|+++++.|+||+|||+||+
T Consensus 639 l~~~~~~I~RL~NDi~S~k 657 (764)
T 3p5p_A 639 MFELVSLSWRLTNDTKTYQ 657 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccchH
Confidence 9999999999999999874
No 9
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=1.6e-115 Score=949.34 Aligned_cols=366 Identities=36% Similarity=0.622 Sum_probs=343.2
Q ss_pred CCccchhHHHHHHHHhCCccCcHHHHHHHHHHHHhccccc-------ccccCChhhhhHHHHHhhhcCcccccccccccc
Q 043404 23 TEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNKDY-------NWRKENLYATSLEFRLLRQHGYPVSQEVFSGFK 95 (393)
Q Consensus 23 ~d~~~~l~lID~lqRLGI~~hFe~EI~~~L~~i~~~~~~~-------~~~~~dL~~~Al~FRLLRqhGy~VS~DvF~~F~ 95 (393)
.|++++|++||+||||||+|||++||+++|+++|++| .. .+...||++|||+|||||||||+||||||++|+
T Consensus 296 ~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~-~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~ 374 (817)
T 3sdr_A 296 VDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHW-NERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFK 374 (817)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHC-CTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGB
T ss_pred CcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHh-hhcccccccCCCCCCHHHHHHHHHHHHHcCCCccHhHHHHHh
Confidence 5899999999999999999999999999999999984 22 112469999999999999999999999999999
Q ss_pred cCCccc------cccchHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhccC-CC-----CcchhHHHHHHHHcCC
Q 043404 96 DDKVGF------ICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSN-SK-----EEDVFVAEQAKRALEL 163 (393)
Q Consensus 96 d~~G~F------~~~d~~glL~LYeAS~l~~~gE~iLdeA~~fs~~~L~~~~~~~~-~~-----~~~~~L~~~V~~aL~~ 163 (393)
|++|+| +.+|++||||||||||+++|||+|||||+.||++||++.+.. + .+ ++ +|+++|+|||++
T Consensus 375 d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~-~~~~~~~~~~~--~L~~eV~~aL~~ 451 (817)
T 3sdr_A 375 DANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEK-SETSSAWNNKQ--NLSQEIKYALKT 451 (817)
T ss_dssp CC--CBCCCSSCHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTS-GGGGSHHHHHT--THHHHHHHHHHC
T ss_pred hcCCCceechhhhchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhc-cccccccccCC--cHHHHHHHHhcC
Confidence 999999 258999999999999999999999999999999999998722 1 11 24 799999999999
Q ss_pred CccCCchhhHHhhhHHHhhcccc------------ccHHHHHHHhhhhHHHHHHhHHHHHHHHh----------------
Q 043404 164 PLHWKVPMLEARWFIHVYEKRED------------KNHLLLELAKLEFNTLQAIYQEELKDISG---------------- 215 (393)
Q Consensus 164 P~~~~~~Rlear~yI~~Y~~~~~------------~n~~lLelAkldFn~~Q~~hq~EL~~lsr---------------- 215 (393)
|||+++||||||+||++|++++. +|+.||||||+|||+||++||+||++|+|
T Consensus 452 P~~~~l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~l~faRdr 531 (817)
T 3sdr_A 452 SWHASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGLPLFTFARER 531 (817)
T ss_dssp CSTTCCHHHHHHHHHTTCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGCTTSCCC
T ss_pred chhccChHHHHHHHHHHhCccchhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhhhhhceeHHhcCCCcCccHHHH
Confidence 99999999999999999998775 49999999999999999999999999998
Q ss_pred --------hccccCCCchhHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHH
Q 043404 216 --------MGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNF 287 (393)
Q Consensus 216 --------~~~~fEP~~s~~Ri~~aK~~~l~tviDD~yD~ygTleEl~~ft~av~RWD~~~~i~~LPeymki~f~al~~~ 287 (393)
+|++|||+||.+|++|||+++|+|++||+||+|||+|||++||+||+|||++ ++++||+|||+||.+|+++
T Consensus 532 ~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~-~~~~LPeymk~~~~aL~~~ 610 (817)
T 3sdr_A 532 PLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLS-FTENLPDYMKLCYQIYYDI 610 (817)
T ss_dssp HHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCGG-GGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCch-hhhcCchHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhH-HHHHHHhcCCCccchHHH
Q 043404 288 VNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPL-IITISYLSGTNPIIKKEL 366 (393)
Q Consensus 288 ~~ei~~~~~~~~g~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~-l~~~s~~~~g~~~t~e~~ 366 (393)
+|||++++.++||+++++|++++|++++++|++||||+++||+||+||||+||.+|+|+++ ++++++++||+.+|+|++
T Consensus 611 ~~e~~~~~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~~g~~lt~e~~ 690 (817)
T 3sdr_A 611 VHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEAL 690 (817)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTCTTCCCCHHHH
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHHcCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988 888888999999999999
Q ss_pred hhcc--CChHHHHHHHHHHhhhcccCCCC
Q 043404 367 EFLE--SNPDIVHWSSKIFRLQDDLGTSS 393 (393)
Q Consensus 367 ~w~~--~~p~i~~~~~~i~RL~nDi~t~~ 393 (393)
+|+. ++|+|++++++|+||+|||+||+
T Consensus 691 e~~~~~s~p~l~~~~~~I~RL~NDi~S~k 719 (817)
T 3sdr_A 691 EKVDYPGRRVLTELNSLISRLADDTKTYK 719 (817)
T ss_dssp HTTCCTTSCSHHHHHHHHHHHHHHHHSSC
T ss_pred hcccccchHHHHHHHHHHHHHhccchHHH
Confidence 9987 56799999999999999999986
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=1.3e-96 Score=790.17 Aligned_cols=360 Identities=24% Similarity=0.305 Sum_probs=305.8
Q ss_pred HHHHHHHHHHHHHHHhh-----cCCccchhHHHHHHHHhCCccCcHHHHHHHHHHHHhccccccc-------ccCChhhh
Q 043404 5 KRRAEELKGKVKTAIKD-----VTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNKDYNW-------RKENLYAT 72 (393)
Q Consensus 5 ~~~~~~lk~~vr~~l~~-----~~d~~~~l~lID~lqRLGI~~hFe~EI~~~L~~i~~~~~~~~~-------~~~dL~~~ 72 (393)
.+..+-|+..|++.... ..|++++|++||+||||||+|||++||+++|+++|+.| ...+ ...||++|
T Consensus 220 ~~~l~YL~~~v~k~~g~VP~~yP~d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~-~~~g~~~~~~~~~~DL~~t 298 (727)
T 3pya_A 220 SNCLEYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYW-TDNGICWARCSHVQDIDDT 298 (727)
T ss_dssp HHHHHHHHHHHHHTTTCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTC-CTTCCCSSSSCSCCCHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHh-hhcCcccccCCCCCCHHHH
Confidence 34567788888887643 26899999999999999999999999999999999984 2111 13699999
Q ss_pred hHHHHHhhhcCcccccccccccccCCccc------cccchHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhccCC
Q 043404 73 SLEFRLLRQHGYPVSQEVFSGFKDDKVGF------ICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNS 146 (393)
Q Consensus 73 Al~FRLLRqhGy~VS~DvF~~F~d~~G~F------~~~d~~glL~LYeAS~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~ 146 (393)
||+|||||||||+||||||++|+ ++|+| ..+|++||||||||||+++|||+|||||+.||++||++.+.. +.
T Consensus 299 AL~FRLLRqhGy~VS~DvF~~Fk-~~G~F~~~~~e~~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~-~~ 376 (727)
T 3pya_A 299 AMAFRLLRQHGYQVSADVFKNFE-KEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKRER-EE 376 (727)
T ss_dssp HHHHHHHHHTTCCCCGGGGGGGE-ETTEECSSTTCCCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHhCCCCCCHHHHHhcc-CCCcccccccccccccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhc-CC
Confidence 99999999999999999999999 78999 357999999999999999999999999999999999998733 33
Q ss_pred C------CcchhHHHHHHHHcCCCccCCchhhHHhhhHHHhhcccc-------------ccHHHHHHHhhhhHHHHHHhH
Q 043404 147 K------EEDVFVAEQAKRALELPLHWKVPMLEARWFIHVYEKRED-------------KNHLLLELAKLEFNTLQAIYQ 207 (393)
Q Consensus 147 ~------~~~~~L~~~V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~-------------~n~~lLelAkldFn~~Q~~hq 207 (393)
+ ++ +|+++|+|||++|||+++||||||+||++|+++++ +|+.||||||+|||+||++||
T Consensus 377 ~~dkw~~~~--~L~~~V~~aL~~P~~~~l~RleaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq 454 (727)
T 3pya_A 377 LIDKWIIMK--DLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQ 454 (727)
T ss_dssp CCCSSEECS--CHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCGGGCEEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCC--cHHHHHHHHhcCcHhcCChHHHHHHHHHHhccCcchhhhhhhccccccccHHHHHHHHHhHHHHHHHhH
Confidence 2 35 89999999999999999999999999999997665 699999999999999999999
Q ss_pred HHHHHHHh------------------------hccccCCCchhHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhh
Q 043404 208 EELKDISG------------------------MGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVER 263 (393)
Q Consensus 208 ~EL~~lsr------------------------~~~~fEP~~s~~Ri~~aK~~~l~tviDD~yD~ygTleEl~~ft~av~R 263 (393)
+||++|+| +|++|||+||.+|++|||+++|+|++||+||+|| |||++||+||+|
T Consensus 455 ~EL~~lsrWwk~~~l~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yG--eEl~~ft~av~r 532 (727)
T 3pya_A 455 LEWDIFQKWYEENRLSEWGVRRSELLECYYLAAATIFESERSHERMVWAKSSVLVKAISSSFGESS--DSRRSFSDQFHE 532 (727)
T ss_dssp HHHHHHHHHHHHTTGGGGTCCHHHHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHH
T ss_pred HHHhhhheeHHhcCcccCCchhhHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHh
Confidence 99999999 8899999999999999999999999999999999 999999999999
Q ss_pred cchhh--------hhhc---CChh--HHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 043404 264 WDINY--------ALKH---LPGY--MKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYT 330 (393)
Q Consensus 264 WD~~~--------~i~~---LPey--mki~f~al~~~~~ei~~~~~~~~g~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~ 330 (393)
||++. +++. +|+| ||+||.+|||++|||+.++.++||+++++|++++|++++++|++||+ .
T Consensus 533 wd~~~~~~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei~~~~~k~qg~~v~~~l~~~W~~~l~s~~~Ea~-~----- 606 (727)
T 3pya_A 533 YIANARRSDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMSHGRDVNNLLYLSWGDWMEKWKLYGD-E----- 606 (727)
T ss_dssp HC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHSS-C-----
T ss_pred cccccccccccccchhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcc-c-----
Confidence 99741 4433 3888 99999999999999999999999999999999999999999999998 2
Q ss_pred CCHHHHhhhccccchhhHHHHHHHhcC-CCccchHHHhhccCChHHHHHHHHHHhhhcccCCCC
Q 043404 331 PKLEEYLENGLVSITGPLIITISYLSG-TNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSS 393 (393)
Q Consensus 331 Pt~eEYl~n~~iS~g~~~l~~~s~~~~-g~~~t~e~~~w~~~~p~i~~~~~~i~RL~nDi~t~~ 393 (393)
+| |. +++.++.++ |..+++ .+.- ..|.+++++++.||||+||+++++
T Consensus 607 ---~E----Ae-------llv~~I~l~sG~~l~e-~l~~-~ey~~L~~ltn~icrllndl~~~~ 654 (727)
T 3pya_A 607 ---GE----GE-------LMVKMIILMKNNDLTN-FFTH-THFVRLAEIINRICLPRQYLKARR 654 (727)
T ss_dssp ---CH----HH-------HHHHHHHHHSSSCGGG-GGSS-HHHHHHHHHHHHHSCCCC------
T ss_pred ---cc----ee-------eeeeeeecCCCcchHh-hccC-hhHHHHHHHHHHHhHHHhHHHHHH
Confidence 44 22 334443333 566666 4432 334559999999999999999985
No 11
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=99.97 E-value=2.5e-32 Score=263.92 Aligned_cols=165 Identities=13% Similarity=0.071 Sum_probs=153.7
Q ss_pred HHhhccccCCCchhHHH-HHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHH
Q 043404 213 ISGMGIAFEPQFAYCRR-VLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNEF 291 (393)
Q Consensus 213 lsr~~~~fEP~~s~~Ri-~~aK~~~l~tviDD~yD~ygTleEl~~ft~av~RWD~~~~i~~LPeymki~f~al~~~~~ei 291 (393)
+..++++++|+++.+|+ ++||.+++++++||+||. ||++|++.||+++.||+.+ +.+|+|||.+|++++++++++
T Consensus 46 ~~~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~~~~~~~~~~~~---~~lp~~~~~~~~~l~d~~~~~ 121 (300)
T 1di1_A 46 FSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEAYNNRLIPISRG---DVLPDRTKPEEFILYDLWESM 121 (300)
T ss_dssp HHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHT---SSCCCTTCHHHHHHHHHHHHH
T ss_pred cchhhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHHHHHHHHHHccC---CCCCCCccHHHHHHHHHHHHH
Confidence 44577888999999999 999999999999999999 8999999999999999876 378999999999999999999
Q ss_pred HHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhcCCCccchHHHhhccC
Q 043404 292 AYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLES 371 (393)
Q Consensus 292 ~~~~~~~~g~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~~g~~~t~e~~~w~~~ 371 (393)
+..+ + .+.++.|+.++++|+ ||+|+.+||+||++|||+++.+|+|++++++.++++||..+|+++++ .
T Consensus 122 ~~~~-~-------~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~---~ 189 (300)
T 1di1_A 122 RAHD-A-------ELANEVLEPTFVFMR-AQTDRARLSIHELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQ---D 189 (300)
T ss_dssp HHHH-H-------HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHH---T
T ss_pred HhhC-h-------HHHHHHHHHHHHHHH-HHhccccCCCCCHHHHHHHHhhhccHHHHHHHHHHHcCCCCCHHHHH---H
Confidence 9887 2 478889999999998 89999999999999999999999999999999999999999999999 3
Q ss_pred ChHHHHHHHHHHhhhcccCCCC
Q 043404 372 NPDIVHWSSKIFRLQDDLGTSS 393 (393)
Q Consensus 372 ~p~i~~~~~~i~RL~nDi~t~~ 393 (393)
.|+++++++.++||+|||.||+
T Consensus 190 ~~~l~~~~~~~~~l~NDl~S~~ 211 (300)
T 1di1_A 190 MKALEANCAKQLSVVNDIYSYD 211 (300)
T ss_dssp THHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhhHHHH
Confidence 7999999999999999999985
No 12
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=99.97 E-value=4.2e-32 Score=266.93 Aligned_cols=171 Identities=12% Similarity=0.087 Sum_probs=150.0
Q ss_pred HhhccccCCCchhHHH-HHHHHHHHHHhhhhhhccc--CCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHH
Q 043404 214 SGMGIAFEPQFAYCRR-VLTISIALITVIDDIYDVY--GTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNE 290 (393)
Q Consensus 214 sr~~~~fEP~~s~~Ri-~~aK~~~l~tviDD~yD~y--gTleEl~~ft~av~RWD~~~~i~~LPeymki~f~al~~~~~e 290 (393)
..+|++|+|+++.+|+ ++||.+++++++||+||.| ||++|++.||++++||+.+ .+|+||+.+|.++++++++
T Consensus 51 ~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~ee~~~~~~~l~~~~~~----~~p~~~~~~~~~l~d~~~~ 126 (337)
T 1ps1_A 51 ADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPEDTKQLTDQVAAALDG----PLPDTAPPIAHGFADIWRR 126 (337)
T ss_dssp HHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHHHHHHHHHHHHGGGTS----CCCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCHHHHHHHHHHHHHHcCC----CCCCCCChHHHHHHHHHHH
Confidence 3478899999999999 9999999999999999999 6999999999999999976 4899999999999999999
Q ss_pred HHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCC-CHHHHhhhccccchhhHHHHHHHhcCCCccchHHHhhc
Q 043404 291 FAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTP-KLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFL 369 (393)
Q Consensus 291 i~~~~~~~~g~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~P-t~eEYl~n~~iS~g~~~l~~~s~~~~g~~~t~e~~~w~ 369 (393)
++..+ +....+++++.|+.++++|+.||+|+++||+| |++|||+++.+|+|++++++.+++++|..+++++++.-
T Consensus 127 ~~~~~----~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~p 202 (337)
T 1ps1_A 127 TCEGM----TPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSA 202 (337)
T ss_dssp HHTTS----CHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSH
T ss_pred HhccC----CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhCh
Confidence 88663 45667899999999999999999999999999 99999999999999999999999999999998766652
Q ss_pred cCChHHHHHHHHHHhhhcccCCCC
Q 043404 370 ESNPDIVHWSSKIFRLQDDLGTSS 393 (393)
Q Consensus 370 ~~~p~i~~~~~~i~RL~nDi~t~~ 393 (393)
..++++++++.++||+|||.||+
T Consensus 203 -~~~~l~~~~~~i~rL~NDl~S~~ 225 (337)
T 1ps1_A 203 -VMSAMLQIAVDVNLLLNDIASLE 225 (337)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhhHH
Confidence 34589999999999999999873
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=99.97 E-value=3.1e-31 Score=259.05 Aligned_cols=164 Identities=13% Similarity=0.100 Sum_probs=151.1
Q ss_pred HhhccccCCCchhHHH-HHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHHH
Q 043404 214 SGMGIAFEPQFAYCRR-VLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNEFA 292 (393)
Q Consensus 214 sr~~~~fEP~~s~~Ri-~~aK~~~l~tviDD~yD~ygTleEl~~ft~av~RWD~~~~i~~LPeymki~f~al~~~~~ei~ 292 (393)
..++++++|+++.+|+ ++||.+++++++||+||. ||++|++.||++++||+.+ +.+|+||+.+|.++++++++++
T Consensus 61 ~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~~~e~~~~~~~l~~~~~~---~~~p~~~~~~~~al~d~~~e~~ 136 (320)
T 3bny_A 61 SRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MSFEEGSAYNEKLIPISRG---DVLPDRSIPVEYIIYDLWESMR 136 (320)
T ss_dssp HHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHT---SSCCCTTSHHHHHHHHHHHHHH
T ss_pred hhhHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CChhhHHHHHHHHHHHhcC---CCCCCCcCHHHHHHHHHHHHHH
Confidence 4477788999999999 899999999999999999 9999999999999999975 3689999999999999999999
Q ss_pred HHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhcCCCccchHHHhhccCC
Q 043404 293 YYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESN 372 (393)
Q Consensus 293 ~~~~~~~g~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~~g~~~t~e~~~w~~~~ 372 (393)
..+ + .+.++.|+.++ +|++|++|..+||+||++|||+++.+|+|++++++.++++||..+|+++++ +.
T Consensus 137 ~~~-~-------~~~~~~~~~~~-~~~~e~~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~---~~ 204 (320)
T 3bny_A 137 AHD-R-------EMADEILEPVF-LFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQ---RV 204 (320)
T ss_dssp HHH-H-------HHHHHTHHHHH-HHHHHTSCCCCCCCCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHH---HT
T ss_pred hhC-H-------HHHHHHHHHHH-HHHHHHhhhccCCCCCHHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHH---HH
Confidence 875 2 36788888888 599999999999999999999999999999999999999999999999999 37
Q ss_pred hHHHHHHHHHHhhhcccCCCC
Q 043404 373 PDIVHWSSKIFRLQDDLGTSS 393 (393)
Q Consensus 373 p~i~~~~~~i~RL~nDi~t~~ 393 (393)
|+++++++.++||+|||.||+
T Consensus 205 ~~l~~~~~~~~~L~NDl~S~~ 225 (320)
T 3bny_A 205 REIDANCSKHLSVVNDIYSYE 225 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccchhH
Confidence 999999999999999999863
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=99.94 E-value=3.6e-28 Score=244.67 Aligned_cols=173 Identities=12% Similarity=0.006 Sum_probs=154.1
Q ss_pred HhhccccCCCchhHHH-HHHHHHHHHHhhhhhhcc--cC-CHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHH
Q 043404 214 SGMGIAFEPQFAYCRR-VLTISIALITVIDDIYDV--YG-TLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVN 289 (393)
Q Consensus 214 sr~~~~fEP~~s~~Ri-~~aK~~~l~tviDD~yD~--yg-TleEl~~ft~av~RWD~~~~i~~LPeymki~f~al~~~~~ 289 (393)
..++++++|+++..|+ ++||.+++++++||+||. +| +++|++.|++++.++ .+ ....+|++++.+++++.++++
T Consensus 91 ~~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~~~-l~-~~~~~p~~~~p~~~al~dl~~ 168 (382)
T 3kb9_A 91 TDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHTA-LD-SPGDHLHHEDTLVAGFADSVR 168 (382)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HH-SCGGGTTCSSHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHH-hc-CCCCCCCCCChHHHHHHHHHH
Confidence 3378899999999999 999999999999999997 77 999999999999976 23 223369999999999999999
Q ss_pred HHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhcCCCccchHHHhhc
Q 043404 290 EFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFL 369 (393)
Q Consensus 290 ei~~~~~~~~g~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~~g~~~t~e~~~w~ 369 (393)
+++..+.+ ....+++++|++++++|++||+|+.+||+||++|||+|+.+|+|++++++.+.+++|..++++++++
T Consensus 169 ~~~~~~~~----~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~g~~l~~~~~~~- 243 (382)
T 3kb9_A 169 RLYAFLPA----TWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCELPDAVRKH- 243 (382)
T ss_dssp HHTTSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHTCCCCHHHHTS-
T ss_pred HHHccCCH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHcCCCCCHHHHhC-
Confidence 99866433 3478999999999999999999999999999999999999999999888888888999999998887
Q ss_pred cCChHHHHHHHHHHhhhcccCCCC
Q 043404 370 ESNPDIVHWSSKIFRLQDDLGTSS 393 (393)
Q Consensus 370 ~~~p~i~~~~~~i~RL~nDi~t~~ 393 (393)
...++++++++.++||+|||.||+
T Consensus 244 p~~~~l~~~~~~i~rL~NDi~S~~ 267 (382)
T 3kb9_A 244 PAYRRAALLSQEFAAWYNDLCSLP 267 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999863
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=99.64 E-value=3.2e-16 Score=160.33 Aligned_cols=171 Identities=15% Similarity=0.124 Sum_probs=118.8
Q ss_pred hhccccCCCc-hhHHH-HHHHHHHHHHhhhhhh-cccC-CHHHH-HHHHH---HhhhcchhhhhhcCChh-----HHHHH
Q 043404 215 GMGIAFEPQF-AYCRR-VLTISIALITVIDDIY-DVYG-TLDEL-ELFTD---AVERWDINYALKHLPGY-----MKMCF 281 (393)
Q Consensus 215 r~~~~fEP~~-s~~Ri-~~aK~~~l~tviDD~y-D~yg-TleEl-~~ft~---av~RWD~~~~i~~LPey-----mki~f 281 (393)
+++.+.=|.- +..|+ ..+|......++||.| |..| +.+.+ ..+.. ++.+-.. ..+.-|.. -.-+-
T Consensus 161 llaa~~yP~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~l~~a~~~~d~l~~--~~~g~p~~~~~~~~dp~~ 238 (433)
T 3v1v_A 161 RYMVGCHPDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGRLLLAHTAIDHFHS--TAEYTPTWQASLAADAPR 238 (433)
T ss_dssp HHHHHHCTTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHHHHHHHTTTSCCCC--CTTTHHHHHHHTTSSHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHHHHHHHHHHHhhhc--ccCCCCccccccCCchHH
Confidence 3344445666 56666 6789999999999995 9866 33321 12222 1211100 00000000 01246
Q ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhcCCCcc
Q 043404 282 LALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPI 361 (393)
Q Consensus 282 ~al~~~~~ei~~~~~~~~g~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~~g~~~ 361 (393)
.+++++++++...+.+.+ ..++++.|++++++|++||+|+++||+||++|||+++.+|++++.+.+.. +++|..+
T Consensus 239 ~al~d~~~~l~~~a~~~q----~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~R~~sg~~p~~~l~e-~~~g~~l 313 (433)
T 3v1v_A 239 RAYDSAMGYFVRAATPSQ----SDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAMRQFNNFRPCPTITD-TVGGYEL 313 (433)
T ss_dssp HHHHHHHHHHHHHSCHHH----HHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHSSSTTTGGGHH-HHHTCCC
T ss_pred HHHHHHHHHHHhhcCHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhHHHHHHHHH-HHcCCCC
Confidence 889999999987765544 67889999999999999999999999999999999999995555554443 4478888
Q ss_pred chHHHhhccCChHHHHHHHHHHhhhcccCCCC
Q 043404 362 IKKELEFLESNPDIVHWSSKIFRLQDDLGTSS 393 (393)
Q Consensus 362 t~e~~~w~~~~p~i~~~~~~i~RL~nDi~t~~ 393 (393)
+++++++- ...+++++++.++||+|||.||+
T Consensus 314 p~~v~~~p-~~~~L~~~~~~i~rL~NDI~Sy~ 344 (433)
T 3v1v_A 314 PADLHARP-DMQRVIALAGNATTIVNDLYSYT 344 (433)
T ss_dssp CHHHHTSH-HHHHHHHHHHHHHHHHHHHHSHH
T ss_pred CHHHHhCc-hHHHHHHHHHHHHHHhchHHHHH
Confidence 99887773 35678999999999999999874
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=94.65 E-value=0.06 Score=53.75 Aligned_cols=154 Identities=14% Similarity=0.028 Sum_probs=95.1
Q ss_pred ccCCCch-hHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHHHHHHHh
Q 043404 219 AFEPQFA-YCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLK 297 (393)
Q Consensus 219 ~fEP~~s-~~Ri~~aK~~~l~tviDD~yD~ygTleEl~~ft~av~RWD~~~~i~~LPeymki~f~al~~~~~ei~~~~~~ 297 (393)
..=|.-+ ......++...++.++||.+|--+ +++..|.+.+-+ . .. . +. .+...+.++=.++..
T Consensus 76 r~YP~a~~e~l~liad~~~~~F~lDD~~d~~~--~~l~~~~~~ll~---G-~~-~-~~-------Pl~~al~dl~~rl~~ 140 (374)
T 1yyq_A 76 YSWAKVSKECMADLSIHYTYTLVLDDSKDDPY--PTMVNYFDDLQA---G-RE-Q-AH-------PWWALVNEHFPNVLR 140 (374)
T ss_dssp HHSTTSCHHHHHHHHHHHHHHHHHTTCCSCSH--HHHTTHHHHHHH---T-CC-C-SS-------HHHHHHHHHHHHHHT
T ss_pred hcCCCCCHHHHHHHHHHHHHHHhhcccccCcH--HHHHHHHHHHhc---C-CC-C-CC-------hHHHHHHHHHHHHHH
Confidence 3345444 456678999999999999998543 777778777653 1 11 1 11 223334454445555
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhcCCCccchHHHhhccCChHHHH
Q 043404 298 QQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVH 377 (393)
Q Consensus 298 ~~g~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~~g~~~t~e~~~w~~~~p~i~~ 377 (393)
.-+.....-+.+.|.+.+.+...|+. +.+-.|+..+|..---.++|....... ++ ++..+-.+... +..+...+.
T Consensus 141 ~~~p~~~~rf~~s~~~~~~a~~~Ea~--n~~~~p~~~~Y~~~rR~~sG~~E~~~~-~~-~P~~~~~e~~~-~~~~~~~i~ 215 (374)
T 1yyq_A 141 HFGPFCSLNLIRSTLDFFEGCWIEQY--NFGGFPGSHDYPQFLRRMNGLGHCVGA-SL-WPKEQFNERSL-FLEITSAIA 215 (374)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTT--CCCCCTTCTTHHHHHHHHHHCHHHHHH-TT-CCTTTCCTTTT-HHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHh--ccCCCCCHHHHHHHHHhhccHHHHHHH-hh-ccccccchhhc-chhHHHHHH
Confidence 55656667788899999999999986 467789999997765666665433222 33 22222222111 111234555
Q ss_pred HHHHHHhhhcccCCC
Q 043404 378 WSSKIFRLQDDLGTS 392 (393)
Q Consensus 378 ~~~~i~RL~nDi~t~ 392 (393)
.+..+.=++|||-|+
T Consensus 216 am~~~i~~~NDIlSf 230 (374)
T 1yyq_A 216 QMENWMVWVNDLMSF 230 (374)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhcc
Confidence 555577789998764
No 17
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=56.34 E-value=8.1 Score=27.66 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhhcCCccchhHHHHHHHHh
Q 043404 6 RRAEELKGKVKTAIKDVTEPLDQLELIDNLQRL 38 (393)
Q Consensus 6 ~~~~~lk~~vr~~l~~~~d~~~~l~lID~lqRL 38 (393)
+++.=|.++||+.|..+.+.++++.+..+||-|
T Consensus 16 EeIRwlIeE~Rh~Lk~TensfeQItfmqalQLl 48 (58)
T 1pd3_A 16 EEIRWLIEEVRHRLKITENSFEQITFMQALQLL 48 (58)
T ss_dssp HHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Confidence 455568899999998888999999999999864
No 18
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=53.36 E-value=1.5e+02 Score=28.19 Aligned_cols=95 Identities=14% Similarity=0.146 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHhhhcchhhhh-hcCChh-HHHHHHHHHHHHHHHHHHH------Hh-cCCcchhHHHHHHHHHHHHHHHH
Q 043404 250 TLDELELFTDAVERWDINYAL-KHLPGY-MKMCFLALYNFVNEFAYYV------LK-QQDFDMLLSIKNAWLGLIQAYLV 320 (393)
Q Consensus 250 TleEl~~ft~av~RWD~~~~i-~~LPey-mki~f~al~~~~~ei~~~~------~~-~~g~~~~~~lk~~w~~l~~ayl~ 320 (393)
+-+|+..|.+++++|-.. .+ -+-|++ ...++.++.+.++.++... .. ..-....+++......++.+||+
T Consensus 104 ~~~e~~r~~~~~~~s~~~-L~~~G~~~~~~eDF~d~f~ell~~i~~~~~~~~~L~~~Fnd~~~S~~iv~~LRllts~yi~ 182 (284)
T 4dhi_B 104 DRARLEKFIASSRDWTRT-LVELGFPDWTCTDFCDFFIEFLEKIHSGVHTEEAVYTILNDDGSANYILMFFRLITSAFLK 182 (284)
T ss_dssp CHHHHHHHHHHHHHHHHH-HHHTTCCHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH-HHHCCCchhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 458999999999998665 33 234554 4556666666666554321 00 00112345555566678889999
Q ss_pred HHHHhhcCCCC---CHHHHhhhccccch
Q 043404 321 EAKWYHSKYTP---KLEEYLENGLVSIT 345 (393)
Q Consensus 321 EAkW~~~~y~P---t~eEYl~n~~iS~g 345 (393)
.-...-..++| ++++|.+.-+.+.+
T Consensus 183 ~~~d~f~pFi~~~~~v~~yC~~eVe~~~ 210 (284)
T 4dhi_B 183 QNSEEYAPFIDEGMTVAQYCEQEIEPMW 210 (284)
T ss_dssp HTHHHHGGGSCTTCCHHHHHHHHTSSTT
T ss_pred HCHHHHHhhcCCCCCHHHHHHHhceehh
Confidence 87777677774 79999986555544
No 19
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=43.23 E-value=46 Score=32.58 Aligned_cols=82 Identities=15% Similarity=0.153 Sum_probs=57.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhc--CCCccchHHHhhccCChHHHHHH
Q 043404 302 DMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLS--GTNPIIKKELEFLESNPDIVHWS 379 (393)
Q Consensus 302 ~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~--~g~~~t~e~~~w~~~~p~i~~~~ 379 (393)
.++..+-+++..++..-+.+-.|..+. ||.++|++.-.--+|...-.+ +-+| ++. .+++..+.+ -++-+..
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a-~~lga~lag-a~~~~~~~l---~~~g~~l 232 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASA-GYLGAMHAG-AAPEHIDAL---KNFGAAV 232 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHH-HHHHHHHTT-CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHH-HHHHHHHcC-CCHHHHHHH---HHHHHHH
Confidence 456778888999999999999998665 999999987666666433221 1111 222 455555554 3678888
Q ss_pred HHHHhhhcccC
Q 043404 380 SKIFRLQDDLG 390 (393)
Q Consensus 380 ~~i~RL~nDi~ 390 (393)
++...+.||+-
T Consensus 233 G~aFQI~DDil 243 (360)
T 3lmd_A 233 GMIFQIVDDII 243 (360)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 20
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=35.87 E-value=1.3e+02 Score=28.30 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=55.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHH-hcCCCccchHHHhhccCChHHHHHHH
Q 043404 302 DMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISY-LSGTNPIIKKELEFLESNPDIVHWSS 380 (393)
Q Consensus 302 ~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~-~~~g~~~t~e~~~w~~~~p~i~~~~~ 380 (393)
.++..+.+....++..-+.+-.|..+...||.++|++.-.--+|...-++... ..++. .++ ..-++-+..+
T Consensus 111 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~-~~~-------~l~~~g~~lG 182 (301)
T 2q80_A 111 DAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD-YKE-------DLKPLLNTLG 182 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCS-------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCC-ChH-------HHHHHHHHHH
Confidence 45566778888999999999999876668999999988776666432222111 11222 121 2356888899
Q ss_pred HHHhhhcccC
Q 043404 381 KIFRLQDDLG 390 (393)
Q Consensus 381 ~i~RL~nDi~ 390 (393)
+...+.||+-
T Consensus 183 ~aFQi~DD~l 192 (301)
T 2q80_A 183 LFFQIRDDYA 192 (301)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999974
No 21
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=33.09 E-value=1.5e+02 Score=22.16 Aligned_cols=62 Identities=15% Similarity=0.173 Sum_probs=35.6
Q ss_pred cCCccchhHHHHHHHHhCCccCcHHHHHHHHHHHHhcccccccc-cCChhhhhHHHHHhh-hcCcccccc
Q 043404 22 VTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNKDYNWR-KENLYATSLEFRLLR-QHGYPVSQE 89 (393)
Q Consensus 22 ~~d~~~~l~lID~lqRLGI~~hFe~EI~~~L~~i~~~~~~~~~~-~~dL~~~Al~FRLLR-qhGy~VS~D 89 (393)
.+..+..=++...+.++|++ +.|+++++..+=.. ++..+ ..+. ..+|.-.-.+ +.|+.++..
T Consensus 23 ~dG~I~~~el~~~l~~~g~~---~~~~~~i~~~~D~d--~dG~i~~~EF-~~~~~~~~~~~~~g~~lP~~ 86 (95)
T 1c07_A 23 MDGFVSGLEVREIFLKTGLP---STLLAHIWSLCDTK--DCGKLSKDQF-ALAFHLISQKLIKGIDPPHV 86 (95)
T ss_dssp CSSEECHHHHHHHHHTTTCC---HHHHHHHHHHHCTT--CSSSEETTTH-HHHHHHHHHHHTSCCCCCSS
T ss_pred CCCcEeHHHHHHHHHHcCCC---HHHHHHHHHHHCCC--CCCcCCHHHH-HHHHHHHHHHHHcCCCCCCc
Confidence 34566777888889999976 67777776544211 11111 1233 3333333334 789988654
No 22
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=32.98 E-value=1.2e+02 Score=22.53 Aligned_cols=73 Identities=10% Similarity=0.114 Sum_probs=41.1
Q ss_pred HHHHHHHHhh----cCCccchhHHHHHHHHhCCccCcHHHHHHHHHHHHhcccccccccCChhhhhHHHHHhhhcCcccc
Q 043404 12 KGKVKTAIKD----VTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNKDYNWRKENLYATSLEFRLLRQHGYPVS 87 (393)
Q Consensus 12 k~~vr~~l~~----~~d~~~~l~lID~lqRLGI~~hFe~EI~~~L~~i~~~~~~~~~~~~dL~~~Al~FRLLRqhGy~VS 87 (393)
++++++.+.. .+..+..=++...++++|++ +.|+++++..+=.. ++..+..+=...+|.-.-.+++|+.++
T Consensus 8 ~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~---~~~~~~i~~~~D~d--~dG~i~~~EF~~~~~~~~~~~~g~~lp 82 (92)
T 1fi6_A 8 RQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLP---ILELSHIWELSDFD--KDGALTLDEFCAAFHLVVARKNGYDLP 82 (92)
T ss_dssp HHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSC---HHHHHHHHHHHCTT--CSSEEEHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCC---HHHHHHHHHHHCCC--CCCCCCHHHHHHHHHHHHHHHcCCCCC
Confidence 3455566643 34566777888899999976 57777766544111 111111111223343334568899987
Q ss_pred cc
Q 043404 88 QE 89 (393)
Q Consensus 88 ~D 89 (393)
+.
T Consensus 83 ~~ 84 (92)
T 1fi6_A 83 EK 84 (92)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 23
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=32.59 E-value=92 Score=30.27 Aligned_cols=82 Identities=18% Similarity=0.064 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhc--CCCccchHHHhhccCChHHHHHHH
Q 043404 303 MLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLS--GTNPIIKKELEFLESNPDIVHWSS 380 (393)
Q Consensus 303 ~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~--~g~~~t~e~~~w~~~~p~i~~~~~ 380 (393)
++..+-++...++..-+.+-.|..+ ..||.++|++.-.--+|...- +++-+| ++. .+++..+-+ -++-+..+
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~-~~~~~ga~lag-~~~~~~~~l---~~~g~~lG 217 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLA-CASSIGAVLGG-ADERTADTL---EKYGYHLG 217 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHH-HHHHHHHHHTT-CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHH-HHHHHHHHHcC-CCHHHHHHH---HHHHHHHH
Confidence 4566777888899998888888653 478999999887666665432 222221 222 455555544 36788889
Q ss_pred HHHhhhcccC
Q 043404 381 KIFRLQDDLG 390 (393)
Q Consensus 381 ~i~RL~nDi~ 390 (393)
+...+.||+-
T Consensus 218 ~aFQi~DD~l 227 (352)
T 3nf2_A 218 LAFQAVDDLL 227 (352)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 24
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=31.04 E-value=3e+02 Score=24.91 Aligned_cols=90 Identities=9% Similarity=0.172 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHhhhcchhhhh-hcCChh-HHHHHHHHHHHHHHHHHH-----H---HhcCCcchhHHHHHHHHHHHHHHH
Q 043404 250 TLDELELFTDAVERWDINYAL-KHLPGY-MKMCFLALYNFVNEFAYY-----V---LKQQDFDMLLSIKNAWLGLIQAYL 319 (393)
Q Consensus 250 TleEl~~ft~av~RWD~~~~i-~~LPey-mki~f~al~~~~~ei~~~-----~---~~~~g~~~~~~lk~~w~~l~~ayl 319 (393)
..+|+..|.+++++|... .+ -+.|+. ...++.++...++.++.. + ...+ ....+.......++.+||
T Consensus 70 ~~~e~~r~~~~~~~~~~~-l~~~g~~~~~~edf~~~f~~ll~~i~~~~~~~~L~~~fndq--~~s~~~v~~lR~lta~yi 146 (234)
T 2zfy_A 70 DSKELQRFKAVSAKSKED-LVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQ--STSDYLVVYLRLLTSGYL 146 (234)
T ss_dssp CHHHHHHHHHHHHHHHHH-HHHTTCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSH--HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH-HHHcCCchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhh--ccchHHHHHHHHHHHHHH
Confidence 568999999999988654 32 223553 334555555555555421 0 0111 122344444555666788
Q ss_pred HHHHHhhcCCCC---CHHHHhhhccc
Q 043404 320 VEAKWYHSKYTP---KLEEYLENGLV 342 (393)
Q Consensus 320 ~EAkW~~~~y~P---t~eEYl~n~~i 342 (393)
++-+-.-..+++ ++++|.+..+.
T Consensus 147 ~~~~d~f~pFi~~~~~~e~yc~~~ve 172 (234)
T 2zfy_A 147 QRESKFFEHFIEGGRTVKEFCQQEVE 172 (234)
T ss_dssp HHTHHHHGGGCCSSCCHHHHHHHHTS
T ss_pred HHCHHHHhcccCCCCCHHHHHHHHhh
Confidence 876655556664 89999875433
No 25
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=30.11 E-value=1.4e+02 Score=28.72 Aligned_cols=87 Identities=10% Similarity=0.095 Sum_probs=57.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHH-hcCCCccchHHHhhccCChHHHHHH
Q 043404 301 FDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISY-LSGTNPIIKKELEFLESNPDIVHWS 379 (393)
Q Consensus 301 ~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~-~~~g~~~t~e~~~w~~~~p~i~~~~ 379 (393)
..++..+.++...++..-..+-.|.. +..||.++|++.-.--+|...-.++.. ..++. .+++..+.+ -++-+..
T Consensus 132 ~~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~~~~~l---~~~g~~l 206 (334)
T 3rmg_A 132 YEIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSVQ-VGEEEVAFA---RLLGEYI 206 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTT-CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHH
Confidence 35667788888999999999998864 446899999988777776542222111 11222 455555543 4678889
Q ss_pred HHHHhhhcccCCC
Q 043404 380 SKIFRLQDDLGTS 392 (393)
Q Consensus 380 ~~i~RL~nDi~t~ 392 (393)
++...+.||+-.+
T Consensus 207 G~aFQi~DD~ld~ 219 (334)
T 3rmg_A 207 GICFQIKDDIFDY 219 (334)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccC
Confidence 9999999997543
No 26
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=29.79 E-value=1.5e+02 Score=22.70 Aligned_cols=75 Identities=16% Similarity=0.127 Sum_probs=46.8
Q ss_pred HHHHHHHhh----cCCccchhHHHHHHHHhCCccCcHHHHHHHHHHHHhcccccccccCChhhhhHHHHHhhhcCccccc
Q 043404 13 GKVKTAIKD----VTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNKDYNWRKENLYATSLEFRLLRQHGYPVSQ 88 (393)
Q Consensus 13 ~~vr~~l~~----~~d~~~~l~lID~lqRLGI~~hFe~EI~~~L~~i~~~~~~~~~~~~dL~~~Al~FRLLRqhGy~VS~ 88 (393)
++.+..+.. .+..+..=++...+.++|++ +.|+++++..+=.. .+..+..+=...+|.-.-+.|+|+.++.
T Consensus 11 ~~~~~~F~~~D~d~dG~Is~~el~~~l~~~~l~---~~~l~~i~~~~D~d--~dG~i~~~EF~~~~~~~~~~~~g~~~~~ 85 (99)
T 1qjt_A 11 PVYEKYYRQVEAGNTGRVLALDAAAFLKKSGLP---DLILGKIWDLADTD--GKGVLSKQEFFVALRLVACAQNGLEVSL 85 (99)
T ss_dssp THHHHHHHHHCCTTSSCCCSHHHHHHHHTSSSC---HHHHHHHHHHHCCS--SSSSCCSHHHHHHHHHHHHHTTTCCSSG
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCC---HHHHHHHHHHHCCC--CCCcCCHHHHHHHHHHHHHHHcCCCCCh
Confidence 344455532 34456667788889999976 67777776654221 1111122334567777788999999997
Q ss_pred cccc
Q 043404 89 EVFS 92 (393)
Q Consensus 89 DvF~ 92 (393)
+.+.
T Consensus 86 ~~l~ 89 (99)
T 1qjt_A 86 SSLS 89 (99)
T ss_dssp GGCS
T ss_pred hhcc
Confidence 7654
No 27
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=27.70 E-value=1.5e+02 Score=28.70 Aligned_cols=85 Identities=16% Similarity=0.033 Sum_probs=58.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhc--CCCccchHHHhhccCChHHHHHH
Q 043404 302 DMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLS--GTNPIIKKELEFLESNPDIVHWS 379 (393)
Q Consensus 302 ~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~--~g~~~t~e~~~w~~~~p~i~~~~ 379 (393)
.++..+-++...++..-+.+-.|.. +..||.++|++.-.--+|...- .++-+| ++. .+++..+.+ -++-+..
T Consensus 151 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~-~~~~~ga~lag-~~~~~~~~l---~~~g~~l 224 (345)
T 3oyr_A 151 KALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFA-AASEAGAVSAG-VDVAKSEAL---RDYGLNL 224 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHH-HHHHHHHHHTT-CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHH-HHHHHHHHHcC-CCHHHHHHH---HHHHHHH
Confidence 4567777888889999998888864 4468999999887776765322 222221 222 455555544 4678889
Q ss_pred HHHHhhhcccCCC
Q 043404 380 SKIFRLQDDLGTS 392 (393)
Q Consensus 380 ~~i~RL~nDi~t~ 392 (393)
++...+.||+-.+
T Consensus 225 G~aFQi~DD~lD~ 237 (345)
T 3oyr_A 225 GLAFQLADDALDY 237 (345)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998653
No 28
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=27.53 E-value=1.3e+02 Score=28.41 Aligned_cols=82 Identities=7% Similarity=0.073 Sum_probs=48.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhc--CCCccchHHHhhccCChHHHHHH
Q 043404 302 DMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLS--GTNPIIKKELEFLESNPDIVHWS 379 (393)
Q Consensus 302 ~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~--~g~~~t~e~~~w~~~~p~i~~~~ 379 (393)
.++..+.++...++..-+.+-.|..+ .||.++|++.-.--+|...- .++-+| ++. .+++..+.+ -++-+..
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~-~a~~~ga~lag-~~~~~~~~l---~~~g~~l 199 (295)
T 3ipi_A 127 KVIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFA-ISASIGAYTGG-AEEELAERF---SHFGNAL 199 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHH-HHHHHHHHHTT-CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHH-HHHHHHHHHcC-CCHHHHHHH---HHHHHHH
Confidence 45556666777788888888888654 38999998876666664321 211221 222 455555544 3677888
Q ss_pred HHHHhhhcccC
Q 043404 380 SKIFRLQDDLG 390 (393)
Q Consensus 380 ~~i~RL~nDi~ 390 (393)
++...+.||+-
T Consensus 200 GlaFQI~DDil 210 (295)
T 3ipi_A 200 GTAYQIVDDIL 210 (295)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999999874
No 29
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=27.43 E-value=3.5e+02 Score=24.51 Aligned_cols=94 Identities=15% Similarity=0.136 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHhhhcchhhhh-hcCChh-HHHHHHHHHHHHHHHHHHH-----HhcC-CcchhHHHHHHHHHHHHHHHHH
Q 043404 250 TLDELELFTDAVERWDINYAL-KHLPGY-MKMCFLALYNFVNEFAYYV-----LKQQ-DFDMLLSIKNAWLGLIQAYLVE 321 (393)
Q Consensus 250 TleEl~~ft~av~RWD~~~~i-~~LPey-mki~f~al~~~~~ei~~~~-----~~~~-g~~~~~~lk~~w~~l~~ayl~E 321 (393)
..+|+..|.+.+++|... .. -+.|+. .+-++.++.+.++.++... .+.- -....++.......++.+||++
T Consensus 67 ~~~e~~r~~~~~~~~~~~-l~~~g~~~~~~edF~~~f~~ll~~i~~~~~~~~L~~~fnd~~~s~~iv~~lR~lta~~i~~ 145 (234)
T 1tff_A 67 KSREIFKFKERVLQTPND-LLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRN 145 (234)
T ss_dssp CHHHHHHHHHHHHHHHHH-HHHTTCCHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH-HHHcCCchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcccchhhHHHHHHHHHHHHHHH
Confidence 568999999999988643 22 234654 4455666666555554311 0000 0011233444444566777777
Q ss_pred HHHhhcCCCC---CHHHHhhhccccc
Q 043404 322 AKWYHSKYTP---KLEEYLENGLVSI 344 (393)
Q Consensus 322 AkW~~~~y~P---t~eEYl~n~~iS~ 344 (393)
-+-.-..+++ |+++|.+..+.++
T Consensus 146 ~~d~f~pFi~~~~~~~~yC~~~ve~~ 171 (234)
T 1tff_A 146 RADFFRHFIDEEMDIKDFCTHEVEPM 171 (234)
T ss_dssp THHHHGGGSCTTSCHHHHHHHHTSST
T ss_pred CHHHHhhhhcCCCCHHHHHHHHhhhh
Confidence 4443344443 7999988554433
No 30
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=26.24 E-value=1.6e+02 Score=27.94 Aligned_cols=83 Identities=10% Similarity=0.037 Sum_probs=56.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHh--cCCCccchHHHhhccCChHHHHHH
Q 043404 302 DMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYL--SGTNPIIKKELEFLESNPDIVHWS 379 (393)
Q Consensus 302 ~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~--~~g~~~t~e~~~w~~~~p~i~~~~ 379 (393)
.++..+-++...++..-+.+-.|.. +..||.++|++.-.--+|...-. ++-+ .++. .+++..+.+ -++-+..
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~-~~~~ga~lag-~~~~~~~~l---~~~g~~l 203 (325)
T 3aqb_B 130 KFHQIFSKTILEVCFGEFDQMADRF-NYPVSFTAYLRRINRKTAILIEA-SCHLGALSSQ-LDEQSTYHI---KQFGHCI 203 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT-CCCCCHHHHHHHHHHHTHHHHHH-HHHHHHHTTT-CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHhhHHHHHHH-HHHHHHHHcC-CCHHHHHHH---HHHHHHH
Confidence 4566677778889999998988864 34689999998877666654222 1122 1232 455555544 4678888
Q ss_pred HHHHhhhcccC
Q 043404 380 SKIFRLQDDLG 390 (393)
Q Consensus 380 ~~i~RL~nDi~ 390 (393)
++...+.||+-
T Consensus 204 G~afQi~DD~l 214 (325)
T 3aqb_B 204 GMSYQIIDDIL 214 (325)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 31
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=26.20 E-value=1.3e+02 Score=28.86 Aligned_cols=83 Identities=14% Similarity=0.182 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcC--CCCCHHHHhhhccccchhhHHHHHHH-hcCCCccchHHHhhccCChHHHHHH
Q 043404 303 MLLSIKNAWLGLIQAYLVEAKWYHSK--YTPKLEEYLENGLVSITGPLIITISY-LSGTNPIIKKELEFLESNPDIVHWS 379 (393)
Q Consensus 303 ~~~~lk~~w~~l~~ayl~EAkW~~~~--y~Pt~eEYl~n~~iS~g~~~l~~~s~-~~~g~~~t~e~~~w~~~~p~i~~~~ 379 (393)
++..+.+....++..-+.+-.|..+. ..||.++|++.-.--+|...-+++.. ..++. .+.+ ....-++-+..
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~----~~~l~~~g~~l 206 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSP-SSHH----GHSLVPFINLL 206 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCC-C----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC-CcHH----HHHHHHHHHHH
Confidence 45566677888899999999997655 58999999988776666432211111 11121 2221 22345788999
Q ss_pred HHHHhhhcccC
Q 043404 380 SKIFRLQDDLG 390 (393)
Q Consensus 380 ~~i~RL~nDi~ 390 (393)
++...+.||+-
T Consensus 207 G~aFQi~DD~l 217 (340)
T 2e8v_A 207 GIIYQIRDDYL 217 (340)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999974
No 32
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=24.74 E-value=2.4e+02 Score=27.15 Aligned_cols=85 Identities=12% Similarity=0.038 Sum_probs=57.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhc--CCCccchHHHhhccCChHHHHH
Q 043404 301 FDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLS--GTNPIIKKELEFLESNPDIVHW 378 (393)
Q Consensus 301 ~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~--~g~~~t~e~~~w~~~~p~i~~~ 378 (393)
..++..+.++...++..-+.+-.|.. +..||.++|++.-.--+|...- .+.-+| ++. .+++..+.+ -++-+.
T Consensus 138 ~~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~-~~~~~ga~lag-~~~~~~~~l---~~~g~~ 211 (341)
T 3mzv_A 138 MRVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFS-AATEVGGIIGG-APEDQVQAL---FDYGDA 211 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHH-HHHHHHHHHTT-CCHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHH-HHHHHHHHHcC-CCHHHHHHH---HHHHHH
Confidence 34567777888889999998888864 4568999999876666664321 111121 222 455555443 367888
Q ss_pred HHHHHhhhcccCC
Q 043404 379 SSKIFRLQDDLGT 391 (393)
Q Consensus 379 ~~~i~RL~nDi~t 391 (393)
.++...+.||+-.
T Consensus 212 lG~aFQI~DD~ld 224 (341)
T 3mzv_A 212 LGIAFQIVDDLLD 224 (341)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8999999998753
No 33
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=23.19 E-value=1.3e+02 Score=29.20 Aligned_cols=84 Identities=7% Similarity=0.029 Sum_probs=56.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhh----------cCC-CCCHHHHhhhccccchhhHHHHHHHhc--CCCccchHHHhh
Q 043404 302 DMLLSIKNAWLGLIQAYLVEAKWYH----------SKY-TPKLEEYLENGLVSITGPLIITISYLS--GTNPIIKKELEF 368 (393)
Q Consensus 302 ~~~~~lk~~w~~l~~ayl~EAkW~~----------~~y-~Pt~eEYl~n~~iS~g~~~l~~~s~~~--~g~~~t~e~~~w 368 (393)
.++..+-++...++..-+.+-.|.. .+. .||.++|++.-.--+|...-. ++-+| ++. .+++..+.
T Consensus 132 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~-~~~~ga~lag-~~~~~~~~ 209 (358)
T 4dhd_A 132 LFAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAA-AAKWGVLSVS-DDRGLAEA 209 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHH-HHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHH-HHHHHHHHcC-CCHHHHHH
Confidence 4567777888899999999999972 234 789999998876666653221 11121 121 45554444
Q ss_pred ccCChHHHHHHHHHHhhhcccC
Q 043404 369 LESNPDIVHWSSKIFRLQDDLG 390 (393)
Q Consensus 369 ~~~~p~i~~~~~~i~RL~nDi~ 390 (393)
+ -++-+..++...+.||+-
T Consensus 210 l---~~~g~~lG~aFQI~DD~l 228 (358)
T 4dhd_A 210 A---WNFGMAAGVAFQIIDDVL 228 (358)
T ss_dssp H---HHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHH
Confidence 3 367788888889999874
No 34
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=22.42 E-value=1.8e+02 Score=27.86 Aligned_cols=82 Identities=13% Similarity=0.085 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhc--CCCccchHHHhhccCChHHHHHHH
Q 043404 303 MLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLS--GTNPIIKKELEFLESNPDIVHWSS 380 (393)
Q Consensus 303 ~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~--~g~~~t~e~~~w~~~~p~i~~~~~ 380 (393)
++..+.++...++..-+.+..|.. +..||.++|++.-.--+|... ..++-+| ++. .+++..+.+ -++-+..+
T Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~-~~~~~~ga~lag-~~~~~~~~l---~~~g~~lG 217 (334)
T 3pko_A 144 LIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELF-ALSCYQGAQLAG-APQSVIDRT---RDIGIAIG 217 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHH-HHHHHHHHHHTT-CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHH-HHHHHHHHHHcC-CCHHHHHHH---HHHHHHHH
Confidence 455666777888888887877753 457899999987655555432 2222221 222 355555544 36778888
Q ss_pred HHHhhhcccC
Q 043404 381 KIFRLQDDLG 390 (393)
Q Consensus 381 ~i~RL~nDi~ 390 (393)
+...+.||+-
T Consensus 218 ~aFQi~DD~l 227 (334)
T 3pko_A 218 CAYQMLDDIL 227 (334)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8899999874
No 35
>3pt8_A Hemoglobin II; oxygen carrier, oxygen transport; HET: HEM; 1.76A {Lucina pectinata} SCOP: a.1.1.0 PDB: 3pi1_A* 2olp_A* 3pi3_A* 3pi4_A* 3pt7_A* 3pi2_A*
Probab=21.21 E-value=3.4e+02 Score=22.12 Aligned_cols=69 Identities=12% Similarity=0.224 Sum_probs=42.0
Q ss_pred HHHhhhhhhcccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Q 043404 237 LITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQ 316 (393)
Q Consensus 237 l~tviDD~yD~ygTleEl~~ft~av~RWD~~~~i~~LPeymki~f~al~~~~~ei~~~~~~~~g~~~~~~lk~~w~~l~~ 316 (393)
++..++..-+.-+.++.+......+-+ .+....--|++.+++-.+|+.++.+ |....+-++++|.+...
T Consensus 70 v~~~l~~~v~~ld~~~~l~~~l~~L~~--~H~~~gV~p~~f~~~~~~ll~~l~~---------g~~~t~e~~~AW~~~~~ 138 (152)
T 3pt8_A 70 FCNGMSSFVDHLDDNDMLVVLIQKMAK--LHNNRGIRASDLRTAYDILIHYMED---------HNHMVGGAKDAWEVFVG 138 (152)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHH--HHHTTTCCHHHHHHHHHHHHHHHHH---------TTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH--HHHcCCCCHHHHHHHHHHHHHHHHH---------cCcCCHHHHHHHHHHHH
Confidence 344444444444455555554444432 1112334589999999999999887 22346678899987653
Done!