Query 043408
Match_columns 492
No_of_seqs 447 out of 4271
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 04:46:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043408.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043408hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.1E-43 2.4E-48 408.3 35.2 429 1-444 612-1099(1153)
2 PLN00113 leucine-rich repeat r 99.9 7.1E-26 1.5E-30 259.3 19.1 262 2-264 95-367 (968)
3 PLN00113 leucine-rich repeat r 99.9 2.7E-25 5.8E-30 254.5 18.6 247 1-249 119-373 (968)
4 PLN03210 Resistant to P. syrin 99.9 3E-23 6.6E-28 239.4 27.8 243 1-251 559-844 (1153)
5 KOG0444 Cytoskeletal regulator 99.9 1.6E-25 3.6E-30 226.6 -0.5 273 2-282 105-391 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 1.3E-23 2.7E-28 213.1 -4.8 267 1-273 56-358 (1255)
7 KOG4194 Membrane glycoprotein 99.8 2E-20 4.3E-25 189.0 2.5 242 1-243 126-427 (873)
8 KOG0472 Leucine-rich repeat pr 99.8 4E-22 8.7E-27 193.4 -10.0 246 2-254 47-296 (565)
9 KOG4194 Membrane glycoprotein 99.8 3.6E-20 7.7E-25 187.2 3.5 239 1-241 174-448 (873)
10 KOG0472 Leucine-rich repeat pr 99.8 2.5E-21 5.4E-26 188.0 -8.3 235 2-243 70-308 (565)
11 PRK15387 E3 ubiquitin-protein 99.7 1.2E-15 2.7E-20 165.9 15.8 234 3-271 204-439 (788)
12 PRK15370 E3 ubiquitin-protein 99.7 6.2E-16 1.3E-20 169.0 13.4 224 2-250 180-405 (754)
13 PRK15370 E3 ubiquitin-protein 99.6 5.4E-16 1.2E-20 169.4 8.9 222 1-244 200-427 (754)
14 PRK15387 E3 ubiquitin-protein 99.6 2.5E-15 5.4E-20 163.5 13.0 229 1-264 223-456 (788)
15 KOG0618 Serine/threonine phosp 99.6 1.2E-17 2.7E-22 177.0 -5.4 78 2-81 47-125 (1081)
16 KOG0618 Serine/threonine phosp 99.6 1.7E-17 3.7E-22 176.0 -4.7 237 2-245 243-489 (1081)
17 KOG0617 Ras suppressor protein 99.6 6E-17 1.3E-21 141.0 -3.1 154 71-249 34-189 (264)
18 cd00116 LRR_RI Leucine-rich re 99.5 1.9E-15 4.2E-20 151.0 0.7 241 4-244 2-290 (319)
19 KOG0617 Ras suppressor protein 99.5 1.2E-15 2.6E-20 133.0 -1.9 164 83-270 23-189 (264)
20 KOG4237 Extracellular matrix p 99.5 2.1E-15 4.6E-20 146.8 -0.9 196 2-198 69-356 (498)
21 cd00116 LRR_RI Leucine-rich re 99.5 5.4E-15 1.2E-19 147.7 -0.3 221 2-222 25-291 (319)
22 KOG4658 Apoptotic ATPase [Sign 99.1 2.1E-11 4.6E-16 135.6 3.4 246 23-271 523-788 (889)
23 KOG4658 Apoptotic ATPase [Sign 99.1 2.5E-11 5.4E-16 135.1 3.3 122 3-126 526-651 (889)
24 KOG3207 Beta-tubulin folding c 99.1 2E-11 4.4E-16 120.8 1.1 211 18-243 116-337 (505)
25 KOG4237 Extracellular matrix p 99.1 9.7E-12 2.1E-16 121.6 -2.6 144 7-152 53-199 (498)
26 COG4886 Leucine-rich repeat (L 99.0 3E-10 6.5E-15 117.3 7.4 179 66-249 112-294 (394)
27 KOG0532 Leucine-rich repeat (L 99.0 1.4E-11 3.1E-16 125.3 -3.5 189 69-264 74-271 (722)
28 COG4886 Leucine-rich repeat (L 99.0 3.9E-10 8.4E-15 116.5 6.8 189 28-222 98-290 (394)
29 KOG0532 Leucine-rich repeat (L 98.8 2.6E-10 5.6E-15 116.3 -2.0 211 4-243 54-271 (722)
30 KOG3207 Beta-tubulin folding c 98.8 4.4E-10 9.6E-15 111.5 -2.1 182 1-182 122-318 (505)
31 PF14580 LRR_9: Leucine-rich r 98.7 6.4E-09 1.4E-13 94.1 4.1 122 24-150 20-149 (175)
32 KOG1259 Nischarin, modulator o 98.7 2.2E-09 4.7E-14 101.9 0.7 125 93-243 284-410 (490)
33 KOG1909 Ran GTPase-activating 98.6 2E-09 4.3E-14 104.2 -3.0 226 19-244 26-310 (382)
34 KOG1259 Nischarin, modulator o 98.6 4.6E-09 1E-13 99.7 -1.4 98 2-102 286-383 (490)
35 PF14580 LRR_9: Leucine-rich r 98.6 4.2E-08 9.2E-13 88.7 4.6 43 84-128 10-53 (175)
36 PLN03150 hypothetical protein; 98.5 2.9E-07 6.4E-12 100.3 8.3 106 71-176 419-526 (623)
37 PLN03150 hypothetical protein; 98.5 2.2E-07 4.7E-12 101.4 6.5 102 119-220 420-526 (623)
38 PRK15386 type III secretion pr 98.5 5.9E-07 1.3E-11 91.0 8.9 64 66-134 48-111 (426)
39 PRK15386 type III secretion pr 98.4 7.3E-07 1.6E-11 90.4 8.7 137 19-176 48-188 (426)
40 KOG2120 SCF ubiquitin ligase, 98.4 6.7E-09 1.5E-13 98.5 -6.5 174 2-175 187-373 (419)
41 KOG1909 Ran GTPase-activating 98.4 5.6E-08 1.2E-12 94.3 -0.5 219 2-221 32-310 (382)
42 KOG0531 Protein phosphatase 1, 98.3 8.2E-08 1.8E-12 99.8 -0.8 214 21-243 70-288 (414)
43 KOG4341 F-box protein containi 98.3 3.6E-08 7.8E-13 97.6 -3.6 265 2-266 140-439 (483)
44 KOG2120 SCF ubiquitin ligase, 98.3 2.9E-08 6.2E-13 94.3 -4.9 171 94-266 186-376 (419)
45 KOG0531 Protein phosphatase 1, 98.3 1.3E-07 2.8E-12 98.4 -1.2 193 43-243 69-266 (414)
46 PF13855 LRR_8: Leucine rich r 98.2 1.1E-06 2.3E-11 65.2 3.3 57 1-57 2-60 (61)
47 PF13855 LRR_8: Leucine rich r 97.9 5.2E-06 1.1E-10 61.5 2.3 58 93-151 1-59 (61)
48 KOG4341 F-box protein containi 97.9 1.1E-06 2.4E-11 87.3 -3.1 229 19-247 186-441 (483)
49 KOG1859 Leucine-rich repeat pr 97.7 1.7E-06 3.7E-11 91.2 -4.6 111 108-243 178-290 (1096)
50 KOG1859 Leucine-rich repeat pr 97.7 7.1E-07 1.5E-11 94.0 -7.8 85 62-151 179-264 (1096)
51 PF12799 LRR_4: Leucine Rich r 97.6 3.7E-05 8E-10 52.8 2.2 41 209-250 1-41 (44)
52 PF12799 LRR_4: Leucine Rich r 97.4 0.00014 3E-09 49.9 3.1 35 1-35 2-36 (44)
53 KOG3665 ZYG-1-like serine/thre 97.4 6.7E-05 1.4E-09 82.2 1.9 131 46-178 122-263 (699)
54 KOG3665 ZYG-1-like serine/thre 97.4 7.4E-05 1.6E-09 81.9 1.9 104 93-198 122-230 (699)
55 KOG2982 Uncharacterized conser 97.3 4.9E-05 1.1E-09 72.7 0.2 78 3-80 74-156 (418)
56 KOG1947 Leucine rich repeat pr 97.3 4.1E-05 9E-10 80.7 -1.2 130 21-150 186-330 (482)
57 KOG2982 Uncharacterized conser 97.2 0.00044 9.5E-09 66.4 4.5 160 91-250 69-267 (418)
58 KOG1947 Leucine rich repeat pr 97.1 9.4E-05 2E-09 78.0 -0.8 111 44-154 186-308 (482)
59 KOG4579 Leucine-rich repeat (L 97.1 5.1E-05 1.1E-09 64.7 -2.3 81 163-243 51-134 (177)
60 KOG1644 U2-associated snRNP A' 97.1 0.0013 2.9E-08 59.9 6.5 95 4-102 23-122 (233)
61 COG5238 RNA1 Ran GTPase-activa 97.0 0.00038 8.3E-09 66.0 2.3 173 2-177 32-254 (388)
62 COG5238 RNA1 Ran GTPase-activa 96.7 0.00045 9.7E-09 65.5 0.7 190 42-242 26-252 (388)
63 KOG4579 Leucine-rich repeat (L 96.7 0.00024 5.2E-09 60.7 -1.7 62 166-227 78-141 (177)
64 PF07725 LRR_3: Leucine Rich R 96.6 0.0015 3.3E-08 36.2 1.7 20 1-20 1-20 (20)
65 KOG2739 Leucine-rich acidic nu 96.5 0.0011 2.5E-08 62.5 1.7 107 20-127 40-153 (260)
66 KOG2739 Leucine-rich acidic nu 96.5 0.0011 2.3E-08 62.8 1.3 106 42-151 39-153 (260)
67 KOG1644 U2-associated snRNP A' 96.5 0.0049 1.1E-07 56.2 5.3 99 2-103 44-150 (233)
68 KOG2123 Uncharacterized conser 95.5 0.0013 2.9E-08 62.6 -2.9 96 140-259 18-123 (388)
69 PF00560 LRR_1: Leucine Rich R 94.7 0.014 3E-07 33.5 0.9 21 210-230 1-21 (22)
70 PF00560 LRR_1: Leucine Rich R 94.1 0.024 5.3E-07 32.4 1.0 21 1-21 1-21 (22)
71 KOG2123 Uncharacterized conser 93.6 0.0046 1E-07 59.0 -4.1 98 22-123 18-123 (388)
72 PF13306 LRR_5: Leucine rich r 93.6 0.28 6E-06 41.5 7.2 100 18-126 7-112 (129)
73 PF13504 LRR_7: Leucine rich r 93.2 0.053 1.1E-06 28.9 1.2 17 209-225 1-17 (17)
74 PF13306 LRR_5: Leucine rich r 91.3 0.75 1.6E-05 38.8 6.9 79 42-126 8-90 (129)
75 smart00370 LRR Leucine-rich re 88.9 0.37 8.1E-06 28.5 2.2 21 208-228 1-21 (26)
76 smart00369 LRR_TYP Leucine-ric 88.9 0.37 8.1E-06 28.5 2.2 21 208-228 1-21 (26)
77 KOG3864 Uncharacterized conser 87.1 0.08 1.7E-06 48.5 -2.4 60 48-107 103-165 (221)
78 KOG3864 Uncharacterized conser 86.6 0.08 1.7E-06 48.5 -2.6 79 24-102 102-185 (221)
79 KOG4308 LRR-containing protein 85.4 0.0091 2E-07 62.9 -10.8 177 2-178 89-303 (478)
80 KOG4308 LRR-containing protein 85.2 0.016 3.5E-07 61.0 -9.1 127 118-244 145-302 (478)
81 smart00364 LRR_BAC Leucine-ric 72.3 2.5 5.3E-05 25.3 1.3 18 209-226 2-19 (26)
82 KOG0473 Leucine-rich repeat pr 69.4 0.42 9.2E-06 44.9 -3.6 82 139-221 40-123 (326)
83 KOG0473 Leucine-rich repeat pr 67.3 0.3 6.4E-06 45.9 -5.1 85 161-245 38-124 (326)
84 smart00367 LRR_CC Leucine-rich 60.5 4.2 9.2E-05 24.0 0.8 14 232-245 2-15 (26)
85 smart00365 LRR_SD22 Leucine-ri 60.3 7.2 0.00016 23.3 1.7 17 208-224 1-17 (26)
86 PF13516 LRR_6: Leucine Rich r 58.1 6.5 0.00014 22.5 1.3 15 208-222 1-15 (24)
87 smart00368 LRR_RI Leucine rich 41.3 21 0.00045 21.5 1.7 14 209-222 2-15 (28)
88 KOG3763 mRNA export factor TAP 38.6 13 0.00027 39.5 0.6 62 22-83 217-283 (585)
89 KOG3763 mRNA export factor TAP 24.1 32 0.0007 36.6 0.7 64 68-132 216-285 (585)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.1e-43 Score=408.33 Aligned_cols=429 Identities=31% Similarity=0.442 Sum_probs=332.1
Q ss_pred CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408 1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC 80 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~ 80 (492)
+|++|+|++|+++.+|.+++.+++|+.|+|+++..++.+|+++.+++|++|+|++|..+..+|.+++++++|+.|++++|
T Consensus 612 ~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred CCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence 68999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCcccccc-----------------------
Q 043408 81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKI----------------------- 137 (492)
Q Consensus 81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i----------------------- 137 (492)
..++.+|..+++++|+.|++++|..++.+|.. .++|++|++++|. +..+|..+
T Consensus 692 ~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~ 767 (1153)
T PLN03210 692 ENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQ 767 (1153)
T ss_pred CCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-cccccccccccccccccccccchhhcccccc
Confidence 99999999889999999999999888877753 3567788887765 33444321
Q ss_pred -------CCCCCCCEEeccCCCCCCCcccccCCcccccccccccc-cccccccccccCCCCcccccCCCcCCccccCCCC
Q 043408 138 -------CKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGI-AIREVPSSIVCLKNLGRLSFESFKELPECLGQLS 209 (492)
Q Consensus 138 -------~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~ 209 (492)
...++|+.|++++|.....+|..++++++|+.|++++| .++.+|..+ .+++|+.|++++|..+.......+
T Consensus 768 ~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~ 846 (1153)
T PLN03210 768 PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIST 846 (1153)
T ss_pred ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccccc
Confidence 11357889999999889999999999999999999986 577888776 789999999999876543334457
Q ss_pred CCcEEecCCCcccccchhhhcCccccccccccccccccCCCCC---cccceeecccccccccccccchh---hccCC---
Q 043408 210 SLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPELP---CDLSDIEAHCCSSLEALSGLSIL---FTQTS--- 280 (492)
Q Consensus 210 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~---~sL~~L~~~~C~~L~~l~~~~~~---~~~~~--- 280 (492)
+|+.|+|++|.++.+|.++..+++|+.|++++|+.++.+|..+ .+|+.+++.+|.+|+.++..... .....
T Consensus 847 nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~ 926 (1153)
T PLN03210 847 NISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIH 926 (1153)
T ss_pred ccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhccccc
Confidence 8999999999999999999999999999999999999998754 56777899999999876532110 00000
Q ss_pred -C--CCceeecccc-CCCCC----------ceeCCCCCCCCceeccCCccEEE-EEcCCCCCCCccceEEEEEEEeecCC
Q 043408 281 -W--NSQCFDFQHC-EVPRG----------MICFPGSELPEWFMFQSMGASAI-FKLPLDCFSYNFVGFALCAVVAFRDH 345 (492)
Q Consensus 281 -~--~~~~~~~~~c-~l~~~----------~~~~pg~~iP~W~~~~~~g~~~~-i~l~~~~~~~~~~gf~~~~v~~~~~~ 345 (492)
. ......|.+| ++++. .+++||.++|+||.||+.|++++ |.+|+.|+...+.||++|+|+++...
T Consensus 927 ~~~p~~~~l~f~nC~~L~~~a~l~~~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~ 1006 (1153)
T PLN03210 927 SKLPSTVCINFINCFNLDQEALLQQQSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESF 1006 (1153)
T ss_pred ccCCchhccccccccCCCchhhhcccccceEEECCCccCchhccCCcccceeeeeccCCcccCCCccceEEEEEEecCcc
Confidence 0 0123468888 77642 46899999999999999999998 99999999888999999999998865
Q ss_pred CCCCCcceeEEeeeecCC-CCeeeeeeCCccccccCCCCCCcCCCCeEEEEe-ecccccc--ccccccCCCcEEEEEEEe
Q 043408 346 HDGGGSFHVCCESILKTE-DGLFQVTDGRMTGWFDGSPGPRYIGSDHVFLGF-DFNMFSD--GLDEYYCSDEVFIQFYLE 421 (492)
Q Consensus 346 ~~~~~~~~~~c~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sdh~~~~~-~~~~~~~--~~~~~~~~~~~~~~f~~~ 421 (492)
......+.+.|.|++++. +..+......+.|.. ....+|+++|. ......+ ...+ ..+++|.|+|++.
T Consensus 1007 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~ 1078 (1153)
T PLN03210 1007 FIISVSFDIQVCCRFIDRLGNHFDSPYQPHVFSV-------TKKGSHLVIFDCCFPLNEDNAPLAE-LNYDHVDIQFRLT 1078 (1153)
T ss_pred ccCCCceeEEEEEEEECCCCCccccCCCceeEee-------eccccceEEecccccccccccchhc-cCCceeeEEEEEe
Confidence 444456788899988763 322211111111111 12345665554 2100000 0111 1245688999887
Q ss_pred cCccCCceEEEEeeeEEEeecCC
Q 043408 422 DRRCVDFCEVTKCGIHLLYARDF 444 (492)
Q Consensus 422 ~~~~~~~~~v~~cGv~~~y~~~~ 444 (492)
+.. ..++|++||||++|+.+.
T Consensus 1079 ~~~--~~~~~~~cg~~~~~~~~~ 1099 (1153)
T PLN03210 1079 NKN--SQLKLKGCGIRLSEDDSS 1099 (1153)
T ss_pred cCC--CCeEEEeeeEEEeccCCC
Confidence 643 237999999999995544
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=7.1e-26 Score=259.26 Aligned_cols=262 Identities=25% Similarity=0.327 Sum_probs=167.9
Q ss_pred ceEEEccCCCcc-ccccccc-CCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccC
Q 043408 2 LVSLEMPHSSIK-QLWKGVQ-RLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEH 79 (492)
Q Consensus 2 L~~L~L~~s~i~-~l~~~~~-~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~ 79 (492)
|+.|+|++|++. .+|.++. .+++|++|+|++|.+...+|. +.+++|++|+|++|.....+|..++.+++|++|++++
T Consensus 95 L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 173 (968)
T PLN00113 95 IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGG 173 (968)
T ss_pred CCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECcCCcccccCChHHhcCCCCCEEECcc
Confidence 455555555554 4554333 556666666666555444443 3456666666666655556666666777777777776
Q ss_pred CCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcc
Q 043408 80 CRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLP 158 (492)
Q Consensus 80 ~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp 158 (492)
|.....+|..+ ++++|++|++++|.....+|..++++++|++|+|++|...+.+|..++++++|++|++++|...+.+|
T Consensus 174 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 253 (968)
T PLN00113 174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP 253 (968)
T ss_pred CcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccC
Confidence 66545555544 66777777777766656666667777777777777776666667667777777777777766666666
Q ss_pred cccCCccccccccccccccc-ccccccccCCCCcccccCCCc---CCccccCCCCCCcEEecCCCccc-ccchhhhcCcc
Q 043408 159 NELGNLEALKELKAEGIAIR-EVPSSIVCLKNLGRLSFESFK---ELPECLGQLSSLRILFLDKNNFE-RIPESIICLSH 233 (492)
Q Consensus 159 ~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~---~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~ 233 (492)
..++++++|+.|++++|.+. .+|..+..+++|+.|++++|. .+|..+..+++|+.|++++|.++ .+|..+..+++
T Consensus 254 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 333 (968)
T PLN00113 254 SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR 333 (968)
T ss_pred hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCC
Confidence 66777777777777777665 456666667777777776664 35666666777777777777765 55666677777
Q ss_pred ccccccccccccccCCCC---Ccccceeeccccc
Q 043408 234 LYWLRISYCERLKSLPEL---PCDLSDIEAHCCS 264 (492)
Q Consensus 234 L~~L~L~~c~~l~~lp~l---~~sL~~L~~~~C~ 264 (492)
|+.|++++|...+.+|.. ..+|+.|++.++.
T Consensus 334 L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred CCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 777777776655555542 3456666666553
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=2.7e-25 Score=254.51 Aligned_cols=247 Identities=24% Similarity=0.308 Sum_probs=143.7
Q ss_pred CceEEEccCCCccc-ccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408 1 NLVSLEMPHSSIKQ-LWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE 78 (492)
Q Consensus 1 nL~~L~L~~s~i~~-l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~ 78 (492)
+|++|+|++|++.. +|. ..+++|++|+|++|.+...+|. ++.+++|++|+|++|.....+|..++++++|++|+++
T Consensus 119 ~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 196 (968)
T PLN00113 119 SLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196 (968)
T ss_pred CCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc
Confidence 46667777766652 332 3456666666666665555553 6666666666666665555666666666666666666
Q ss_pred CCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCc
Q 043408 79 HCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRL 157 (492)
Q Consensus 79 ~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l 157 (492)
+|.....+|..+ ++++|++|++++|.....+|..++++++|++|++++|...+.+|..++++++|++|++++|...+.+
T Consensus 197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 276 (968)
T PLN00113 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276 (968)
T ss_pred CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC
Confidence 665444455444 5666666666665555556666666666666666666555556666666666666666665555555
Q ss_pred ccccCCccccccccccccccc-ccccccccCCCCcccccCCCc---CCccccCCCCCCcEEecCCCccc-ccchhhhcCc
Q 043408 158 PNELGNLEALKELKAEGIAIR-EVPSSIVCLKNLGRLSFESFK---ELPECLGQLSSLRILFLDKNNFE-RIPESIICLS 232 (492)
Q Consensus 158 p~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~---~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~ 232 (492)
|..+.++++|+.|++++|.+. .+|..+..+++|+.|++.+|. .+|..+..+++|+.|++++|.+. .+|..+..++
T Consensus 277 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~ 356 (968)
T PLN00113 277 PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN 356 (968)
T ss_pred chhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC
Confidence 555556666666666666554 445555555566666555543 24445555555555555555554 4555555555
Q ss_pred cccccccccccccccCC
Q 043408 233 HLYWLRISYCERLKSLP 249 (492)
Q Consensus 233 ~L~~L~L~~c~~l~~lp 249 (492)
+|+.|++++|+....+|
T Consensus 357 ~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 357 NLTVLDLSTNNLTGEIP 373 (968)
T ss_pred CCcEEECCCCeeEeeCC
Confidence 55555555554433333
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=3e-23 Score=239.44 Aligned_cols=243 Identities=33% Similarity=0.498 Sum_probs=184.8
Q ss_pred CceEEEccCCCc------c-cccccccCCC-CCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCC
Q 043408 1 NLVSLEMPHSSI------K-QLWKGVQRLV-NLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKL 72 (492)
Q Consensus 1 nL~~L~L~~s~i------~-~l~~~~~~l~-~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L 72 (492)
+|+.|.+.++.. . .+|.++..++ +|+.|.+.++.. +.+|.-....+|++|+|.+| .+..++..+..+++|
T Consensus 559 ~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l-~~lP~~f~~~~L~~L~L~~s-~l~~L~~~~~~l~~L 636 (1153)
T PLN03210 559 NLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL-RCMPSNFRPENLVKLQMQGS-KLEKLWDGVHSLTGL 636 (1153)
T ss_pred cccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC-CCCCCcCCccCCcEEECcCc-cccccccccccCCCC
Confidence 456666654432 1 4566666654 588888887654 45565346789999999985 477788888899999
Q ss_pred cEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCC
Q 043408 73 IVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCS 152 (492)
Q Consensus 73 ~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~ 152 (492)
+.|+|++|..++.+|....+++|++|++++|..+..+|..++++++|+.|++++|..++.+|..+ ++++|+.|++++|.
T Consensus 637 k~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 637 RNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS 715 (1153)
T ss_pred CEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence 99999998888888876689999999999999999999999999999999999999999998876 78999999999998
Q ss_pred CCCCcccccCCcccccccccccccccccccccccCC-------------------------------CCcccccCCCc--
Q 043408 153 NLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLK-------------------------------NLGRLSFESFK-- 199 (492)
Q Consensus 153 ~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~-------------------------------~L~~L~l~~~~-- 199 (492)
.++.+|.. ..+|+.|++++|.++.+|..+ .++ +|+.|++++|.
T Consensus 716 ~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l 791 (1153)
T PLN03210 716 RLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL 791 (1153)
T ss_pred Cccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc
Confidence 88888765 356788889999888887643 233 45555555553
Q ss_pred -CCccccCCCCCCcEEecCCCc-ccccchhhhcCccccccccccccccccCCCC
Q 043408 200 -ELPECLGQLSSLRILFLDKNN-FERIPESIICLSHLYWLRISYCERLKSLPEL 251 (492)
Q Consensus 200 -~lp~~l~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l 251 (492)
.+|..++++++|+.|+|++|. ++.+|..+ .+++|+.|++++|..++.+|..
T Consensus 792 ~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~ 844 (1153)
T PLN03210 792 VELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI 844 (1153)
T ss_pred cccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc
Confidence 366677777777777777765 66777655 5677777777777776666543
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=1.6e-25 Score=226.63 Aligned_cols=273 Identities=26% Similarity=0.347 Sum_probs=223.5
Q ss_pred ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC--CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccC
Q 043408 2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD--LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEH 79 (492)
Q Consensus 2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~--l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~ 79 (492)
|..|||++|+++..|.++...+++-+|+||+|++.+ +|. +-+++.|-.|||++ +.+..+|+.+..|..|+.|.|++
T Consensus 105 Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 105 LTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIET-IPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSN 182 (1255)
T ss_pred ceeeecchhhhhhcchhhhhhcCcEEEEcccCcccc-CCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCC
Confidence 667888888888888888778888888888877543 443 66777778888877 56777888888888888888888
Q ss_pred CCC----CcccCCccCCCCCCEEEeeCCCC-CcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCC
Q 043408 80 CRS----LTSLSTSIHLESLKTLILSGCSN-LMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNL 154 (492)
Q Consensus 80 ~~~----l~~lp~~~~l~~L~~L~L~~c~~-l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l 154 (492)
|.. ++.+|. +++|++|.+++++. +..+|.++..+.+|..+|++.| .+..+|..+.++.+|+.|+||+| .+
T Consensus 183 NPL~hfQLrQLPs---mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N-~i 257 (1255)
T KOG0444|consen 183 NPLNHFQLRQLPS---MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGN-KI 257 (1255)
T ss_pred ChhhHHHHhcCcc---chhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcC-ce
Confidence 762 334444 77888888888654 3468999999999999999985 46678999999999999999995 56
Q ss_pred CCcccccCCcccccccccccccccccccccccCCCCcccccCCCc----CCccccCCCCCCcEEecCCCcccccchhhhc
Q 043408 155 QRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK----ELPECLGQLSSLRILFLDKNNFERIPESIIC 230 (492)
Q Consensus 155 ~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~----~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~ 230 (492)
+++....+...+|++|+++.|+++.+|+.+..+++|+.|.+.+++ .+|..++.+..|+.+..++|.++-+|+.+..
T Consensus 258 teL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcR 337 (1255)
T KOG0444|consen 258 TELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCR 337 (1255)
T ss_pred eeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhh
Confidence 667667788899999999999999999999999999999998887 4999999999999999999999999999999
Q ss_pred CccccccccccccccccCCC---CCcccceeecccccccccccccchhhccCCCC
Q 043408 231 LSHLYWLRISYCERLKSLPE---LPCDLSDIEAHCCSSLEALSGLSILFTQTSWN 282 (492)
Q Consensus 231 l~~L~~L~L~~c~~l~~lp~---l~~sL~~L~~~~C~~L~~l~~~~~~~~~~~~~ 282 (492)
|.+|+.|.|++| ++..+|+ +.+.|+.|++++.+.|..-|.+.......++.
T Consensus 338 C~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefY 391 (1255)
T KOG0444|consen 338 CVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFY 391 (1255)
T ss_pred hHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccCCCCcchhhhcceee
Confidence 999999999885 5778887 46889999999999988777765544334443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=1.3e-23 Score=213.07 Aligned_cols=267 Identities=26% Similarity=0.357 Sum_probs=183.7
Q ss_pred CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCC-C-CCCCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408 1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTK-I-PDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE 78 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~-~-p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~ 78 (492)
+|++|.|.+|++.++...+..++.||.+++.+|+.-.. + +++-.+..|..|||+. +.+.++|..+.+-+++.+|+|+
T Consensus 56 kLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS 134 (1255)
T KOG0444|consen 56 KLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSH-NQLREVPTNLEYAKNSIVLNLS 134 (1255)
T ss_pred hhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecch-hhhhhcchhhhhhcCcEEEEcc
Confidence 35666777777776666666666666666666654322 3 3466677777777776 4566667666666777777777
Q ss_pred CCCCCcccCCcc--CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCC-------------------------C
Q 043408 79 HCRSLTSLSTSI--HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRL-------------------------E 131 (492)
Q Consensus 79 ~~~~l~~lp~~~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l-------------------------~ 131 (492)
+|. ++.+|... ++.-|-.|+|++ +.++.+|+.+.++..|+.|.|++|... .
T Consensus 135 ~N~-IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~ 212 (1255)
T KOG0444|consen 135 YNN-IETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLD 212 (1255)
T ss_pred cCc-cccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhh
Confidence 654 66666543 666666667766 456666666666666666666665532 2
Q ss_pred ccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCC
Q 043408 132 GLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLS 209 (492)
Q Consensus 132 ~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~ 209 (492)
.+|.++..+.+|..+|+|. +.+..+|+.+-++.+|+.|+|++|.|+++....+...+|++|++++++ .+|+.+..++
T Consensus 213 N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~ 291 (1255)
T KOG0444|consen 213 NIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLT 291 (1255)
T ss_pred cCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhH
Confidence 4566666677777777776 456667777777777888888888887777777777778888887776 4788888888
Q ss_pred CCcEEecCCCccc--ccchhhhcCccccccccccccccccCCCCC---cccceeecccccccccccccc
Q 043408 210 SLRILFLDKNNFE--RIPESIICLSHLYWLRISYCERLKSLPELP---CDLSDIEAHCCSSLEALSGLS 273 (492)
Q Consensus 210 ~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~---~sL~~L~~~~C~~L~~l~~~~ 273 (492)
.|+.|.+.+|.++ .||+.|+++..|+.+...+ ++++-+|+.. ..|+.|.+ +|..|-++|...
T Consensus 292 kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L-~~NrLiTLPeaI 358 (1255)
T KOG0444|consen 292 KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKL-DHNRLITLPEAI 358 (1255)
T ss_pred HHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcc-cccceeechhhh
Confidence 8888888888854 7888888888888888877 4577777753 34666665 456666666543
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=2e-20 Score=189.01 Aligned_cols=242 Identities=24% Similarity=0.219 Sum_probs=127.7
Q ss_pred CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCC-CCCCCCCCCccEEEeeCcccCc------------------
Q 043408 1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTK-IPDLSLATNLESLTFRGCTSLL------------------ 60 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~-~p~l~~~~nL~~L~L~~c~~l~------------------ 60 (492)
+|+.|+|.+|.|.++- +.++.++.|+.||||.|.+.+. .|.|..-.++++|+|++|....
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence 3556666666666554 4455555666666665543321 2234445555555555543322
Q ss_pred -----cccc-cccCCcCCcEEeccCCCCCcccC--CccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCc
Q 043408 61 -----ETHS-SIQYLNKLIVLNLEHCRSLTSLS--TSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEG 132 (492)
Q Consensus 61 -----~~~~-si~~L~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~ 132 (492)
.+|. ++.+|++|+.|+|..|. ++... .+-++++|+.|.|..|..-+--...|..|.++++|+|+.|+....
T Consensus 206 rNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred cCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence 2222 23335555555555443 22111 111344444444444221111122355566777777777666555
Q ss_pred cccccCCCCCCCEEeccCCCCCCCcccccCCccccccccccccccccccc-ccccCCCCcccccCCCc------------
Q 043408 133 LPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPS-SIVCLKNLGRLSFESFK------------ 199 (492)
Q Consensus 133 lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~------------ 199 (492)
--.++.+|+.|+.|+|+.|.....-++.+...++|+.|+|+.|+|+.+++ ++..|..|+.|.++.+.
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l 364 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGL 364 (873)
T ss_pred hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHh
Confidence 55666777777777777765554445566666777777777777766654 34445555555555443
Q ss_pred ------------------CCccccCCCCCCcEEecCCCcccccch-hhhcCcccccccccccc
Q 043408 200 ------------------ELPECLGQLSSLRILFLDKNNFERIPE-SIICLSHLYWLRISYCE 243 (492)
Q Consensus 200 ------------------~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~ 243 (492)
+-...+..+++|+.|+|.||+++.||. .+..+..|+.|+|.+|.
T Consensus 365 ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 365 SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc
Confidence 111234446666666666666666553 55556666666666654
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.79 E-value=4e-22 Score=193.42 Aligned_cols=246 Identities=27% Similarity=0.315 Sum_probs=158.3
Q ss_pred ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408 2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR 81 (492)
Q Consensus 2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~ 81 (492)
|..|.+++|.++.+-+.+..+..|.++++.+|+.....|.++.+..++.|+.+. .++.++|+.++.+.+|+.|+++.|.
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~-n~ls~lp~~i~s~~~l~~l~~s~n~ 125 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSH-NKLSELPEQIGSLISLVKLDCSSNE 125 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhccc-chHhhccHHHhhhhhhhhhhccccc
Confidence 345667777777777777777777777777776665556677777777777776 4566677777777777777777655
Q ss_pred CCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc
Q 043408 82 SLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE 160 (492)
Q Consensus 82 ~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~ 160 (492)
+..+++.+ .+..|+.|+..+ +.+..+|..++++.+|..|++.+|+.....|..+. ++.|++||... +.++.+|+.
T Consensus 126 -~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~-N~L~tlP~~ 201 (565)
T KOG0472|consen 126 -LKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNS-NLLETLPPE 201 (565)
T ss_pred -eeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccch-hhhhcCChh
Confidence 44444444 566666666655 44556667777777777777776554444333333 66677776655 356667777
Q ss_pred cCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccC-CCCCCcEEecCCCcccccchhhhcCcccccc
Q 043408 161 LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLG-QLSSLRILFLDKNNFERIPESIICLSHLYWL 237 (492)
Q Consensus 161 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~-~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L 237 (492)
++.|.+|..|++..|.|..+| .++++..|.+|.+..+. .+|.... ++++|..|||..|++++.|+.+.-+.+|.+|
T Consensus 202 lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rL 280 (565)
T KOG0472|consen 202 LGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERL 280 (565)
T ss_pred hcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhh
Confidence 777777777777777777766 56666666666666554 2554443 6666666666666666666666666666666
Q ss_pred ccccccccccCCCCCcc
Q 043408 238 RISYCERLKSLPELPCD 254 (492)
Q Consensus 238 ~L~~c~~l~~lp~l~~s 254 (492)
|+++| .+..+|.-.++
T Consensus 281 DlSNN-~is~Lp~sLgn 296 (565)
T KOG0472|consen 281 DLSNN-DISSLPYSLGN 296 (565)
T ss_pred cccCC-ccccCCccccc
Confidence 66663 34555543333
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=3.6e-20 Score=187.19 Aligned_cols=239 Identities=23% Similarity=0.189 Sum_probs=157.8
Q ss_pred CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCc----------------------
Q 043408 1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGC---------------------- 56 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c---------------------- 56 (492)
|+++|+|++|.|+.+- ..+..+.+|..|.|+.|++.+..+. |.++++|+.|+|..|
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq 253 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ 253 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence 3455555555555443 2334444555555555543322221 444555555555443
Q ss_pred --ccCccccccccCCcCCcEEeccCCCCCcccCCcc--CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCc
Q 043408 57 --TSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI--HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEG 132 (492)
Q Consensus 57 --~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~ 132 (492)
..-.--...+..|.++++|+|..|+ +..+.... +++.|+.|++++|....--+++....++|++|+|++|....-
T Consensus 254 rN~I~kL~DG~Fy~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l 332 (873)
T KOG4194|consen 254 RNDISKLDDGAFYGLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL 332 (873)
T ss_pred hcCcccccCcceeeecccceeecccch-hhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence 2222222334556777777777765 44443322 788888888888655444456677788888888888877776
Q ss_pred cccccCCCCCCCEEeccCCCCCCCcccccCCccccccccccccccc----ccccccccCCCCcccccCCCc--CCc-ccc
Q 043408 133 LPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIR----EVPSSIVCLKNLGRLSFESFK--ELP-ECL 205 (492)
Q Consensus 133 lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~----~lp~~~~~l~~L~~L~l~~~~--~lp-~~l 205 (492)
-+..+..|.+|++|+|+.|+...--...+..+++|++|||+.|.+. +-...+..+++|+.|.+.|++ .+| ..+
T Consensus 333 ~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAf 412 (873)
T KOG4194|consen 333 DEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAF 412 (873)
T ss_pred ChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhh
Confidence 7777788888888888886543322335777889999999999765 323346779999999999987 455 478
Q ss_pred CCCCCCcEEecCCCccccc-chhhhcCcccccccccc
Q 043408 206 GQLSSLRILFLDKNNFERI-PESIICLSHLYWLRISY 241 (492)
Q Consensus 206 ~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~ 241 (492)
..+..|++|||.+|.+.+| |..+..+ .|+.|.++.
T Consensus 413 sgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 413 SGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 9999999999999998765 5566666 888887754
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=2.5e-21 Score=187.97 Aligned_cols=235 Identities=29% Similarity=0.352 Sum_probs=210.3
Q ss_pred ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408 2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR 81 (492)
Q Consensus 2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~ 81 (492)
|++|++.+|++.++|..++.+.+++.++.++|+.....+.++.+.+|+.|+++. ..+.+++++++.+..|+.++..+|.
T Consensus 70 l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~i~~~~~l~dl~~~~N~ 148 (565)
T KOG0472|consen 70 LTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS-NELKELPDSIGRLLDLEDLDATNNQ 148 (565)
T ss_pred eeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc-cceeecCchHHHHhhhhhhhccccc
Confidence 678999999999999999999999999999998776666799999999999998 5677889999999999999988865
Q ss_pred CCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc
Q 043408 82 SLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE 160 (492)
Q Consensus 82 ~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~ 160 (492)
+.++|..+ ++.+|..|++.+ +.+..+|+..-+++.|++||... +.++.+|..++.+.+|+.|+|..| .+..+| +
T Consensus 149 -i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~N-ki~~lP-e 223 (565)
T KOG0472|consen 149 -ISSLPEDMVNLSKLSKLDLEG-NKLKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRN-KIRFLP-E 223 (565)
T ss_pred -cccCchHHHHHHHHHHhhccc-cchhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhc-ccccCC-C
Confidence 77777776 889999999999 56777777766699999999887 467899999999999999999985 566788 7
Q ss_pred cCCcccccccccccccccccccccc-cCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhhcCcccccc
Q 043408 161 LGNLEALKELKAEGIAIREVPSSIV-CLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWL 237 (492)
Q Consensus 161 l~~l~~L~~L~l~~~~i~~lp~~~~-~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L 237 (492)
|+.+..|++|+++.|.|+-+|+... .+++|..|++..++ +.|+.+..+.+|++||+++|.++.+|.+++++ .|+.|
T Consensus 224 f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L 302 (565)
T KOG0472|consen 224 FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFL 302 (565)
T ss_pred CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeeh
Confidence 8999999999999999999998765 89999999999886 79999999999999999999999999999999 99999
Q ss_pred cccccc
Q 043408 238 RISYCE 243 (492)
Q Consensus 238 ~L~~c~ 243 (492)
-+.+|+
T Consensus 303 ~leGNP 308 (565)
T KOG0472|consen 303 ALEGNP 308 (565)
T ss_pred hhcCCc
Confidence 999986
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.66 E-value=1.2e-15 Score=165.90 Aligned_cols=234 Identities=24% Similarity=0.262 Sum_probs=166.6
Q ss_pred eEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCC
Q 043408 3 VSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRS 82 (492)
Q Consensus 3 ~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~ 82 (492)
..|+++.++++.+|..+. ++|+.|++++|++. .+|. ..++|++|+|++| .+..+|.. .++|+.|++++|.
T Consensus 204 ~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt-~LP~--lp~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N~- 273 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA--LPPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSNP- 273 (788)
T ss_pred cEEEcCCCCCCcCCcchh--cCCCEEEccCCcCC-CCCC--CCCCCcEEEecCC-ccCcccCc---ccccceeeccCCc-
Confidence 468999999999998765 48999999998754 5665 3689999999986 56667643 4688899998875
Q ss_pred CcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccC
Q 043408 83 LTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELG 162 (492)
Q Consensus 83 l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~ 162 (492)
+..+|. .+.+|+.|++++| .+..+|.. .++|+.|++++|... .+|.. ..+|+.|++++|. ++.+|..
T Consensus 274 L~~Lp~--lp~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~N~L~-~Lp~l---p~~L~~L~Ls~N~-L~~LP~l-- 340 (788)
T PRK15387 274 LTHLPA--LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQLA-SLPAL---PSELCKLWAYNNQ-LTSLPTL-- 340 (788)
T ss_pred hhhhhh--chhhcCEEECcCC-cccccccc---ccccceeECCCCccc-cCCCC---cccccccccccCc-ccccccc--
Confidence 666765 2467888999885 45667653 468999999987554 45542 2457778888754 4456642
Q ss_pred CcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhhcCccccccccc
Q 043408 163 NLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRIS 240 (492)
Q Consensus 163 ~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~ 240 (492)
..+|+.|++++|+++.+|... .+|+.|++.++. .+|.. +++|+.|++++|.++.+|.. .++|+.|+++
T Consensus 341 -p~~Lq~LdLS~N~Ls~LP~lp---~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS 410 (788)
T PRK15387 341 -PSGLQELSVSDNQLASLPTLP---SELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVS 410 (788)
T ss_pred -ccccceEecCCCccCCCCCCC---cccceehhhccccccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEcc
Confidence 246888888888888887643 456666666654 35532 35788888888888877753 2578888888
Q ss_pred cccccccCCCCCcccceeecccccccccccc
Q 043408 241 YCERLKSLPELPCDLSDIEAHCCSSLEALSG 271 (492)
Q Consensus 241 ~c~~l~~lp~l~~sL~~L~~~~C~~L~~l~~ 271 (492)
+|. +..+|..+.+|+.|++.++ .++.+|.
T Consensus 411 ~N~-LssIP~l~~~L~~L~Ls~N-qLt~LP~ 439 (788)
T PRK15387 411 GNR-LTSLPMLPSGLLSLSVYRN-QLTRLPE 439 (788)
T ss_pred CCc-CCCCCcchhhhhhhhhccC-cccccCh
Confidence 864 6778877777888777663 3555554
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=6.2e-16 Score=168.96 Aligned_cols=224 Identities=24% Similarity=0.345 Sum_probs=157.0
Q ss_pred ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408 2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR 81 (492)
Q Consensus 2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~ 81 (492)
..+|++.+++++.+|..+. ++|+.|+|++|++. .+|. ....+|++|++++|. +..+|..+. .+|+.|+|++|.
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~-~l~~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPE-NLQGNIKTLYANSNQ-LTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred ceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCCh-hhccCCCEEECCCCc-cccCChhhh--ccccEEECcCCc
Confidence 4678888888888886554 57888999888755 4553 113588889888864 566776554 478888888876
Q ss_pred CCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCccccc
Q 043408 82 SLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNEL 161 (492)
Q Consensus 82 ~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l 161 (492)
+..+|..+ ..+|+.|++++| .+..+|..+. ++|+.|++++|... .+|..+. .+|+.|++++|. +..+|..+
T Consensus 253 -L~~LP~~l-~s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l 323 (754)
T PRK15370 253 -ITELPERL-PSALQSLDLFHN-KISCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNS-LTALPETL 323 (754)
T ss_pred -cCcCChhH-hCCCCEEECcCC-ccCccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCc-cccCCccc
Confidence 56777644 357888888864 5566776654 57888888887543 4555443 468888888754 44566544
Q ss_pred CCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhhcCcccccccc
Q 043408 162 GNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRI 239 (492)
Q Consensus 162 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L 239 (492)
. ++|+.|++++|.++.+|..+. ++|+.|++++|. .+|..+ .++|+.|+|++|+++.+|..+. ..|+.|++
T Consensus 324 ~--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdL 395 (754)
T PRK15370 324 P--PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQA 395 (754)
T ss_pred c--ccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhh
Confidence 3 578888888888888877653 678888888775 355544 3678888888888888887665 36888888
Q ss_pred ccccccccCCC
Q 043408 240 SYCERLKSLPE 250 (492)
Q Consensus 240 ~~c~~l~~lp~ 250 (492)
++|+ +..+|+
T Consensus 396 s~N~-L~~LP~ 405 (754)
T PRK15370 396 SRNN-LVRLPE 405 (754)
T ss_pred ccCC-cccCch
Confidence 8854 556665
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.63 E-value=5.4e-16 Score=169.42 Aligned_cols=222 Identities=23% Similarity=0.348 Sum_probs=174.4
Q ss_pred CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408 1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC 80 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~ 80 (492)
+|+.|+|++|+|+.+|..+. .+|+.|++++|.+. .+|. ....+|+.|+|++|. +..+|..+. .+|+.|++++|
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~-~l~~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPA-TLPDTIQEMELSINR-ITELPERLP--SALQSLDLFHN 272 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCCh-hhhccccEEECcCCc-cCcCChhHh--CCCCEEECcCC
Confidence 47899999999999997664 59999999999754 5664 223589999999975 557887765 58999999976
Q ss_pred CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc
Q 043408 81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE 160 (492)
Q Consensus 81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~ 160 (492)
. +..+|..+ .++|+.|++++| .+..+|..+. ++|+.|++++|... .+|..+. ++|+.|++++|. +..+|..
T Consensus 273 ~-L~~LP~~l-~~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~ 343 (754)
T PRK15370 273 K-ISCLPENL-PEELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSNSLT-ALPETLP--PGLKTLEAGENA-LTSLPAS 343 (754)
T ss_pred c-cCcccccc-CCCCcEEECCCC-ccccCcccch--hhHHHHHhcCCccc-cCCcccc--ccceeccccCCc-cccCChh
Confidence 5 77888754 368999999996 5667776553 47999999998655 4665443 689999999975 4557766
Q ss_pred cCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhhc----Cccc
Q 043408 161 LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESIIC----LSHL 234 (492)
Q Consensus 161 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~----l~~L 234 (492)
+. ++|+.|++++|.+..+|..+. ++|+.|++++|. .+|..+. .+|+.|++++|+++.+|..+.. ++.+
T Consensus 344 l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l 417 (754)
T PRK15370 344 LP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQP 417 (754)
T ss_pred hc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCc
Confidence 54 689999999999999987663 689999999986 4666553 4799999999999988765544 4788
Q ss_pred cccccccccc
Q 043408 235 YWLRISYCER 244 (492)
Q Consensus 235 ~~L~L~~c~~ 244 (492)
..|++.+|+.
T Consensus 418 ~~L~L~~Npl 427 (754)
T PRK15370 418 TRIIVEYNPF 427 (754)
T ss_pred cEEEeeCCCc
Confidence 8999999863
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=2.5e-15 Score=163.49 Aligned_cols=229 Identities=24% Similarity=0.243 Sum_probs=161.2
Q ss_pred CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408 1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC 80 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~ 80 (492)
+|+.|++.+|+++.+|.. .++|++|+|++|++. .+|.+ .++|+.|+|++|. +..+|.. ..+|+.|++++|
T Consensus 223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt-sLP~l--p~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N 292 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT-SLPVL--PPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGN 292 (788)
T ss_pred CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC-cccCc--ccccceeeccCCc-hhhhhhc---hhhcCEEECcCC
Confidence 478999999999999854 589999999999754 56643 5789999999864 5556642 357888999987
Q ss_pred CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc
Q 043408 81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE 160 (492)
Q Consensus 81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~ 160 (492)
. ++.+|. .+++|+.|++++| .+..+|... .+|+.|++++|... .+|.. ..+|+.|+|++| .+..+|..
T Consensus 293 ~-Lt~LP~--~p~~L~~LdLS~N-~L~~Lp~lp---~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N-~Ls~LP~l 360 (788)
T PRK15387 293 Q-LTSLPV--LPPGLQELSVSDN-QLASLPALP---SELCKLWAYNNQLT-SLPTL---PSGLQELSVSDN-QLASLPTL 360 (788)
T ss_pred c-cccccc--cccccceeECCCC-ccccCCCCc---ccccccccccCccc-ccccc---ccccceEecCCC-ccCCCCCC
Confidence 5 777775 3578999999986 455566532 35777888876553 45542 247888888885 44456653
Q ss_pred cCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhhcCccccccc
Q 043408 161 LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLR 238 (492)
Q Consensus 161 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 238 (492)
. .+|+.|++++|.+..+|... .+|+.|++++|. .+|.. .++|+.|++++|.++.+|... .+|+.|+
T Consensus 361 p---~~L~~L~Ls~N~L~~LP~l~---~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l~---~~L~~L~ 428 (788)
T PRK15387 361 P---SELYKLWAYNNRLTSLPALP---SGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPMLP---SGLLSLS 428 (788)
T ss_pred C---cccceehhhccccccCcccc---cccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcch---hhhhhhh
Confidence 2 45777888888888777543 467778887765 34432 357888888888888777533 4677788
Q ss_pred cccccccccCCCC---Ccccceeeccccc
Q 043408 239 ISYCERLKSLPEL---PCDLSDIEAHCCS 264 (492)
Q Consensus 239 L~~c~~l~~lp~l---~~sL~~L~~~~C~ 264 (492)
+++|. ++.+|.. .++++.|++.+.+
T Consensus 429 Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 429 VYRNQ-LTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hccCc-ccccChHHhhccCCCeEECCCCC
Confidence 88754 6677753 3566677776654
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.61 E-value=1.2e-17 Score=177.02 Aligned_cols=78 Identities=28% Similarity=0.354 Sum_probs=53.8
Q ss_pred ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408 2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC 80 (492)
Q Consensus 2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~ 80 (492)
|+.|+|++|.+...|..+..+.+|+.|+++.|.+. .+| ..+++.+|++|+|.+ +.+..+|.++..+++|+.|++++|
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLDLSFN 124 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheecc-chhhcCchhHHhhhcccccccchh
Confidence 66777777777777777777777777777776543 333 366677777777764 556667777777777777777665
Q ss_pred C
Q 043408 81 R 81 (492)
Q Consensus 81 ~ 81 (492)
.
T Consensus 125 ~ 125 (1081)
T KOG0618|consen 125 H 125 (1081)
T ss_pred c
Confidence 4
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.61 E-value=1.7e-17 Score=176.00 Aligned_cols=237 Identities=30% Similarity=0.367 Sum_probs=155.7
Q ss_pred ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408 2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC 80 (492)
Q Consensus 2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~ 80 (492)
|++++++++++..+|+.+..+.+|+.++..+|.+ ..+|. +...++|+.|.+..| .+..+|+....++.|++|+|..|
T Consensus 243 l~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 243 LQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred ceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhc
Confidence 4555555555555555555555555555555544 33332 444555555555442 34444444445555555555554
Q ss_pred CCCcccCCcc---CCCCCCEEEeeCCCCCcccCcc-ccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCC
Q 043408 81 RSLTSLSTSI---HLESLKTLILSGCSNLMKLPSS-IERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQR 156 (492)
Q Consensus 81 ~~l~~lp~~~---~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~ 156 (492)
. +.++|... -..+|+.|+.+. ..+...|.. =..++.|+.|++.+|......-..+.+.++|+.|+|++ +.++.
T Consensus 321 ~-L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~ 397 (1081)
T KOG0618|consen 321 N-LPSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNS 397 (1081)
T ss_pred c-ccccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-ccccc
Confidence 3 44444422 111133333332 222233321 12356788889999888887777788899999999998 46777
Q ss_pred cccc-cCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCccc--ccchhhhcC
Q 043408 157 LPNE-LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFE--RIPESIICL 231 (492)
Q Consensus 157 lp~~-l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l 231 (492)
+|+. +.+++.|++|+++||.++.+|..+..+..|++|...++. .+| .+..++.|+.+|++.|+++ .+|.....
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~- 475 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS- 475 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-
Confidence 8864 788999999999999999999999999999999988776 366 8888999999999999987 44543333
Q ss_pred cccccccccccccc
Q 043408 232 SHLYWLRISYCERL 245 (492)
Q Consensus 232 ~~L~~L~L~~c~~l 245 (492)
++|++||+++|..+
T Consensus 476 p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 476 PNLKYLDLSGNTRL 489 (1081)
T ss_pred cccceeeccCCccc
Confidence 89999999999864
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=6e-17 Score=141.04 Aligned_cols=154 Identities=32% Similarity=0.445 Sum_probs=96.2
Q ss_pred CCcEEeccCCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEecc
Q 043408 71 KLIVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLS 149 (492)
Q Consensus 71 ~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls 149 (492)
+++.|.|++|+ +..+|..+ .+.+|+.|++++ +.++++|.+|+.+++|+.|+++-| .+..+|..++.++.|+.|||+
T Consensus 34 ~ITrLtLSHNK-l~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNK-LTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCc-eeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhcc
Confidence 33344444433 33444433 444444444444 345566666777777777777654 345677777777778888877
Q ss_pred CCCCC-CCcccccCCcccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccchhh
Q 043408 150 GCSNL-QRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESI 228 (492)
Q Consensus 150 ~c~~l-~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l 228 (492)
.|+.. ..+|..+-.|+.|+.|++++|.++-+|..+ +.+++|+.|.+..|.+-++|..+
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dv---------------------g~lt~lqil~lrdndll~lpkei 169 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDV---------------------GKLTNLQILSLRDNDLLSLPKEI 169 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcccCChhh---------------------hhhcceeEEeeccCchhhCcHHH
Confidence 76544 357777777888888888888887777654 55555666666666666666666
Q ss_pred hcCccccccccccccccccCC
Q 043408 229 ICLSHLYWLRISYCERLKSLP 249 (492)
Q Consensus 229 ~~l~~L~~L~L~~c~~l~~lp 249 (492)
+.++.|+.|++.+| +++.+|
T Consensus 170 g~lt~lrelhiqgn-rl~vlp 189 (264)
T KOG0617|consen 170 GDLTRLRELHIQGN-RLTVLP 189 (264)
T ss_pred HHHHHHHHHhcccc-eeeecC
Confidence 66666666666663 344444
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.52 E-value=1.9e-15 Score=150.99 Aligned_cols=241 Identities=18% Similarity=0.115 Sum_probs=154.8
Q ss_pred EEEccCCCcc-ccc-ccccCCCCCcEEEccCCCCCCC----CC-CCCCCCCccEEEeeCcccC------ccccccccCCc
Q 043408 4 SLEMPHSSIK-QLW-KGVQRLVNLKHLNLSHSEHLTK----IP-DLSLATNLESLTFRGCTSL------LETHSSIQYLN 70 (492)
Q Consensus 4 ~L~L~~s~i~-~l~-~~~~~l~~L~~L~Ls~~~~l~~----~p-~l~~~~nL~~L~L~~c~~l------~~~~~si~~L~ 70 (492)
.|+|..+.++ .-| ..+..+.+|+.|+++++.+... ++ .+...++|++|+++++... ..++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4667777775 333 4445567788888888775332 22 2556677888888776433 22344566677
Q ss_pred CCcEEeccCCCCCcccCCcc-CC---CCCCEEEeeCCCCCc----ccCccccCC-CCCcEEEcccCCCCC----cccccc
Q 043408 71 KLIVLNLEHCRSLTSLSTSI-HL---ESLKTLILSGCSNLM----KLPSSIERL-SSLILLNLRNCSRLE----GLPSKI 137 (492)
Q Consensus 71 ~L~~L~L~~~~~l~~lp~~~-~l---~~L~~L~L~~c~~l~----~lp~~i~~l-~~L~~L~L~~~~~l~----~lp~~i 137 (492)
+|+.|++++|......+..+ .+ ++|++|++++|.... .+...+..+ ++|+.|++++|.... .++..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 88888888876432222222 22 448888888875442 233445666 788888888887663 234455
Q ss_pred CCCCCCCEEeccCCCCCC----CcccccCCccccccccccccccc-----ccccccccCCCCcccccCCCcCC-------
Q 043408 138 CKLKSLERLNLSGCSNLQ----RLPNELGNLEALKELKAEGIAIR-----EVPSSIVCLKNLGRLSFESFKEL------- 201 (492)
Q Consensus 138 ~~l~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~l------- 201 (492)
..+++|++|++++|...+ .++..+...++|+.|++++|.+. .+...+..+++|+.|++++|.--
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 667788888888876542 23344555568888888888765 34455667788888888887511
Q ss_pred cccc-CCCCCCcEEecCCCccc-----ccchhhhcCccccccccccccc
Q 043408 202 PECL-GQLSSLRILFLDKNNFE-----RIPESIICLSHLYWLRISYCER 244 (492)
Q Consensus 202 p~~l-~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~c~~ 244 (492)
...+ ...+.|++|++++|.++ .+...+..+++|+++++++|..
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 1111 12478889999988875 4455666778888998888754
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=1.2e-15 Score=133.01 Aligned_cols=164 Identities=30% Similarity=0.451 Sum_probs=105.2
Q ss_pred CcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccC
Q 043408 83 LTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELG 162 (492)
Q Consensus 83 l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~ 162 (492)
...++..+++.++..|.++. +++..+|+.|..+.+|+.|++++| .++.+|..+..++.|+.|+++- +.+..+|..+|
T Consensus 23 f~~~~gLf~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgm-nrl~~lprgfg 99 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGM-NRLNILPRGFG 99 (264)
T ss_pred Hhhcccccchhhhhhhhccc-CceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecch-hhhhcCccccC
Confidence 34455555666677777776 345556666666666666666653 2344555555555555555543 23444455555
Q ss_pred CcccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccchhhhcCccccccccccc
Q 043408 163 NLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYC 242 (492)
Q Consensus 163 ~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c 242 (492)
.++.|+.||+..|++.+ ..+|..+..++.|+.|+|+.|.|+.+|..++++++|+.|.+.+|
T Consensus 100 s~p~levldltynnl~e-------------------~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNE-------------------NSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred CCchhhhhhcccccccc-------------------ccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC
Confidence 55555555554444331 13667778888999999999999999999999999999999996
Q ss_pred cccccCCCC---Ccccceeeccccccccccc
Q 043408 243 ERLKSLPEL---PCDLSDIEAHCCSSLEALS 270 (492)
Q Consensus 243 ~~l~~lp~l---~~sL~~L~~~~C~~L~~l~ 270 (492)
. +-++|.- ...|++|.+.+- .|+.++
T Consensus 161 d-ll~lpkeig~lt~lrelhiqgn-rl~vlp 189 (264)
T KOG0617|consen 161 D-LLSLPKEIGDLTRLRELHIQGN-RLTVLP 189 (264)
T ss_pred c-hhhCcHHHHHHHHHHHHhcccc-eeeecC
Confidence 5 5566653 356677777663 344444
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.50 E-value=2.1e-15 Score=146.83 Aligned_cols=196 Identities=22% Similarity=0.229 Sum_probs=135.7
Q ss_pred ceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCcccccc-ccCCc--------
Q 043408 2 LVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSS-IQYLN-------- 70 (492)
Q Consensus 2 L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~s-i~~L~-------- 70 (492)
-++++|..|+|+.|| ..|+.+++||+||||+|.+....|+ |.++.+|-+|.+.++..+..+|.. ++.|.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 478999999999999 5688999999999999998777776 999999999999998888887753 33444
Q ss_pred ----------------CCcEEeccCCCCCcccCCcc--CCCCCCEEEeeCCCCCc-------------------------
Q 043408 71 ----------------KLIVLNLEHCRSLTSLSTSI--HLESLKTLILSGCSNLM------------------------- 107 (492)
Q Consensus 71 ----------------~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~L~~c~~l~------------------------- 107 (492)
+|..|.+.+|. ++.++... .+..++.+.+..+..+-
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 44444444433 33333311 45555555544322100
Q ss_pred ------------------------------------ccC-ccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccC
Q 043408 108 ------------------------------------KLP-SSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSG 150 (492)
Q Consensus 108 ------------------------------------~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~ 150 (492)
..| ..|..+++|+.|+|++|+..+.-+.++..+..+++|.|.+
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 111 1267788999999998888887778888888888888888
Q ss_pred CCCCCCcccccCCccccccccccccccccc-ccccccCCCCcccccCCC
Q 043408 151 CSNLQRLPNELGNLEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESF 198 (492)
Q Consensus 151 c~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~ 198 (492)
|+....-...+..+..|+.|+|.+|+|+-+ |..+..+.+|..|.+-++
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence 644322233567778888888888888744 444556666666666443
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.47 E-value=5.4e-15 Score=147.74 Aligned_cols=221 Identities=22% Similarity=0.195 Sum_probs=98.0
Q ss_pred ceEEEccCCCcc-----cccccccCCCCCcEEEccCCCCCC--C----C-CCCCCCCCccEEEeeCcccCccccccccCC
Q 043408 2 LVSLEMPHSSIK-----QLWKGVQRLVNLKHLNLSHSEHLT--K----I-PDLSLATNLESLTFRGCTSLLETHSSIQYL 69 (492)
Q Consensus 2 L~~L~L~~s~i~-----~l~~~~~~l~~L~~L~Ls~~~~l~--~----~-p~l~~~~nL~~L~L~~c~~l~~~~~si~~L 69 (492)
|++|+++++.++ .+...+...++|+.++++++.... . + ..+..+++|++|+|++|......+..+..+
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 104 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence 455555555552 233444445555555555554331 0 0 113445555555555554443333333333
Q ss_pred cC---CcEEeccCCCCCc----ccCCcc-CC-CCCCEEEeeCCCCCc----ccCccccCCCCCcEEEcccCCCCC----c
Q 043408 70 NK---LIVLNLEHCRSLT----SLSTSI-HL-ESLKTLILSGCSNLM----KLPSSIERLSSLILLNLRNCSRLE----G 132 (492)
Q Consensus 70 ~~---L~~L~L~~~~~l~----~lp~~~-~l-~~L~~L~L~~c~~l~----~lp~~i~~l~~L~~L~L~~~~~l~----~ 132 (492)
.+ |+.|++++|.... .+...+ .+ ++|++|++++|.... .++..+..+++|++|++++|...+ .
T Consensus 105 ~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 184 (319)
T cd00116 105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA 184 (319)
T ss_pred hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHH
Confidence 33 5555555554210 011111 23 555555555554331 223334445555555555554442 1
Q ss_pred cccccCCCCCCCEEeccCCCCCC----CcccccCCccccccccccccccccc--ccccc----cCCCCcccccCCCcC--
Q 043408 133 LPSKICKLKSLERLNLSGCSNLQ----RLPNELGNLEALKELKAEGIAIREV--PSSIV----CLKNLGRLSFESFKE-- 200 (492)
Q Consensus 133 lp~~i~~l~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~~l--p~~~~----~l~~L~~L~l~~~~~-- 200 (492)
++..+..+++|+.|++++|.... .+...+..+++|+.|++++|.+... ..... ..+.|+.|++.+|.-
T Consensus 185 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~ 264 (319)
T cd00116 185 LAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD 264 (319)
T ss_pred HHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCc
Confidence 22233344455555555553321 1223344455555555555554421 00001 124555555555531
Q ss_pred -----CccccCCCCCCcEEecCCCccc
Q 043408 201 -----LPECLGQLSSLRILFLDKNNFE 222 (492)
Q Consensus 201 -----lp~~l~~l~~L~~L~L~~n~l~ 222 (492)
+...+..+++|+.+++++|.+.
T Consensus 265 ~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 265 DGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 1233344455555555555554
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.13 E-value=2.1e-11 Score=135.61 Aligned_cols=246 Identities=28% Similarity=0.377 Sum_probs=148.3
Q ss_pred CCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCccc-Ccccccc-ccCCcCCcEEeccCCCCCcccCCcc-CCCCCCEEE
Q 043408 23 VNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTS-LLETHSS-IQYLNKLIVLNLEHCRSLTSLSTSI-HLESLKTLI 99 (492)
Q Consensus 23 ~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~-l~~~~~s-i~~L~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~ 99 (492)
...+.+.+-++.+. .+++-...++|++|-+.++.. +..++.. +..++.|++|||++|..+..+|..+ ++-+||.|+
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred hheeEEEEeccchh-hccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 44556666555432 333334445677777776553 4444432 5567777777777777777777777 577777777
Q ss_pred eeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCC--CCCcccccCCcccccccccccccc
Q 043408 100 LSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSN--LQRLPNELGNLEALKELKAEGIAI 177 (492)
Q Consensus 100 L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~--l~~lp~~l~~l~~L~~L~l~~~~i 177 (492)
++++ .+..+|..++++..|.+|++..+..+..+|..+..+.+|++|.+..... ....-..+.++++|+.+.......
T Consensus 602 L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~ 680 (889)
T KOG4658|consen 602 LSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV 680 (889)
T ss_pred ccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh
Confidence 7773 4667777777777888888777776666666666677888887765321 111222334445555554433332
Q ss_pred cccccccccCCCCc----ccccCCCc--CCccccCCCCCCcEEecCCCcccccch-h-----hh-cCccccccccccccc
Q 043408 178 REVPSSIVCLKNLG----RLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPE-S-----II-CLSHLYWLRISYCER 244 (492)
Q Consensus 178 ~~lp~~~~~l~~L~----~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~-~-----l~-~l~~L~~L~L~~c~~ 244 (492)
.+-..+..+..|. .+.+.++. ..+..+..+.+|+.|.+.++.+.++.. . .. .++++..+.+.+|..
T Consensus 681 -~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~ 759 (889)
T KOG4658|consen 681 -LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHM 759 (889)
T ss_pred -HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccc
Confidence 1111112222222 22322222 355667788888999888888653211 1 11 144677777888887
Q ss_pred cccCCC--CCcccceeecccccccccccc
Q 043408 245 LKSLPE--LPCDLSDIEAHCCSSLEALSG 271 (492)
Q Consensus 245 l~~lp~--l~~sL~~L~~~~C~~L~~l~~ 271 (492)
++.+.. .+++|+.|.+..|..++.+..
T Consensus 760 ~r~l~~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 760 LRDLTWLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred ccccchhhccCcccEEEEecccccccCCC
Confidence 777653 578999999999988876654
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.12 E-value=2.5e-11 Score=135.10 Aligned_cols=122 Identities=25% Similarity=0.296 Sum_probs=78.9
Q ss_pred eEEEccCCCcccccccccCCCCCcEEEccCCCC-CCCCCC--CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccC
Q 043408 3 VSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEH-LTKIPD--LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEH 79 (492)
Q Consensus 3 ~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~-l~~~p~--l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~ 79 (492)
+...+-++++..++... .+++|+.|-+.+|.. +..++. |..++.|++|||++|..+.++|.+|+.|-+|++|++++
T Consensus 526 rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD 604 (889)
T ss_pred eEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC
Confidence 44555556665554332 234677777766652 333433 66677777777777777777777777777777777776
Q ss_pred CCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEccc
Q 043408 80 CRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRN 126 (492)
Q Consensus 80 ~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~ 126 (492)
+. +..+|..+ +++.|.+|++..+..+..+|..+..+.+|++|.+..
T Consensus 605 t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 605 TG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred CC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 43 66777766 677777777777666665655555677777777665
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2e-11 Score=120.82 Aligned_cols=211 Identities=20% Similarity=0.217 Sum_probs=144.6
Q ss_pred cccCCCCCcEEEccCCCCCCCC--CCCCCCCCccEEEeeCcc--cCccccccccCCcCCcEEeccCCCCCcccCCcc--C
Q 043408 18 GVQRLVNLKHLNLSHSEHLTKI--PDLSLATNLESLTFRGCT--SLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI--H 91 (492)
Q Consensus 18 ~~~~l~~L~~L~Ls~~~~l~~~--p~l~~~~nL~~L~L~~c~--~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~--~ 91 (492)
--.++++|+.+.|.++...... .....+++++.|||++|- +...+..-+..|++|+.|+|+.|+..-...... .
T Consensus 116 kQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 116 KQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred HhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 3456899999999988754322 146779999999999853 222333445679999999999987433222222 6
Q ss_pred CCCCCEEEeeCCCCCc-ccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcc--cccCCccccc
Q 043408 92 LESLKTLILSGCSNLM-KLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLP--NELGNLEALK 168 (492)
Q Consensus 92 l~~L~~L~L~~c~~l~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp--~~l~~l~~L~ 168 (492)
+++|+.|.+++|.... .+......+++|+.|+|..|..+..-......+..|+.|+|++|+... ++ ...+.++.|+
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchh
Confidence 8899999999997653 344556778999999999986444333334456788899998865543 33 3567788888
Q ss_pred ccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccch--hhhcCcccccccccccc
Q 043408 169 ELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPE--SIICLSHLYWLRISYCE 243 (492)
Q Consensus 169 ~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~c~ 243 (492)
.|+++.|+|.++..-- . +..+-...+++|++|++..|++..++. .+..+.+|+.|.+..++
T Consensus 275 ~Lnls~tgi~si~~~d--~------------~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPD--V------------ESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred hhhccccCcchhcCCC--c------------cchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 8888888877542100 0 000113567889999999999876653 56667778888776654
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.06 E-value=9.7e-12 Score=121.56 Aligned_cols=144 Identities=17% Similarity=0.161 Sum_probs=93.5
Q ss_pred ccCCCcccccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcc
Q 043408 7 MPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTS 85 (492)
Q Consensus 7 L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~ 85 (492)
-++.+++.+|..+. +.-..|+|..|.+....+. |+.+++|++|||+.|.....-|..+..+.+|..|-+.++..++.
T Consensus 53 Cr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 53 CRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred ccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 34455666665443 2455677777765444433 88888888888888766666677777888887777777666888
Q ss_pred cCCcc--CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCC
Q 043408 86 LSTSI--HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCS 152 (492)
Q Consensus 86 lp~~~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~ 152 (492)
+|... ++.+|+.|.+.-|...-.....+..+++|..|.+.+|.....--.++..+..++.+.+..+.
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 77655 67777777666543333334557777778777777754433222256667777777766554
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.04 E-value=3e-10 Score=117.31 Aligned_cols=179 Identities=35% Similarity=0.457 Sum_probs=113.1
Q ss_pred ccCCcCCcEEeccCCCCCcccCCccCCC--CCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCC
Q 043408 66 IQYLNKLIVLNLEHCRSLTSLSTSIHLE--SLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSL 143 (492)
Q Consensus 66 i~~L~~L~~L~L~~~~~l~~lp~~~~l~--~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L 143 (492)
+..+..++.|++.++. +..++...... +|+.|++++ +.+..+|..++.+++|+.|++++|.. ..+|...+.++.|
T Consensus 112 ~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~~~L 188 (394)
T COG4886 112 LLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNL 188 (394)
T ss_pred hhcccceeEEecCCcc-cccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCchh-hhhhhhhhhhhhh
Confidence 4444566777666644 55555555332 677777776 34555656667777777777776543 3444444466677
Q ss_pred CEEeccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCcC--CccccCCCCCCcEEecCCCcc
Q 043408 144 ERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKE--LPECLGQLSSLRILFLDKNNF 221 (492)
Q Consensus 144 ~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~--lp~~l~~l~~L~~L~L~~n~l 221 (492)
+.|++++ +.+..+|...+....|++|.+++|.+.+.+..+..+.++..+.+.++.. ++..++.+++++.|++++|.+
T Consensus 189 ~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 189 NNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQI 267 (394)
T ss_pred hheeccC-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccc
Confidence 7777776 3555666655556667777777776666666666666666666555543 356667777777777777777
Q ss_pred cccchhhhcCccccccccccccccccCC
Q 043408 222 ERIPESIICLSHLYWLRISYCERLKSLP 249 (492)
Q Consensus 222 ~~lp~~l~~l~~L~~L~L~~c~~l~~lp 249 (492)
+.++. +..+.+|+.|+++++.....+|
T Consensus 268 ~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 268 SSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccccc-ccccCccCEEeccCccccccch
Confidence 76665 6677777777777765444433
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=1.4e-11 Score=125.34 Aligned_cols=189 Identities=28% Similarity=0.413 Sum_probs=154.6
Q ss_pred CcCCcEEeccCCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEe
Q 043408 69 LNKLIVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLN 147 (492)
Q Consensus 69 L~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~ 147 (492)
+..-...+|+.|+ ...+|... .+..|+.+.++. +.+..+|..+.++..|.+|||+.|. +..+|..++.|+ |+.|-
T Consensus 74 ltdt~~aDlsrNR-~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNR-FSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccc-cccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEE
Confidence 4444566777765 55666555 566777777776 4567889999999999999999864 567888888887 89999
Q ss_pred ccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccc
Q 043408 148 LSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIP 225 (492)
Q Consensus 148 Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp 225 (492)
+++ ++++.+|+.++....|..||.+.|.+..+|+-++.+.+|+.|.+.++. .+|..+.. -.|..||+++|++..||
T Consensus 150 ~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDfScNkis~iP 227 (722)
T KOG0532|consen 150 VSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDFSCNKISYLP 227 (722)
T ss_pred Eec-CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC-CceeeeecccCceeecc
Confidence 987 688899999999999999999999999999999999999999998876 68888884 46899999999999999
Q ss_pred hhhhcCccccccccccccccccCCCCC------cccceeeccccc
Q 043408 226 ESIICLSHLYWLRISYCERLKSLPELP------CDLSDIEAHCCS 264 (492)
Q Consensus 226 ~~l~~l~~L~~L~L~~c~~l~~lp~l~------~sL~~L~~~~C~ 264 (492)
.++.++..|++|-|.+|+ |++-|.-. -=.++|++.-|.
T Consensus 228 v~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhcc
Confidence 999999999999999976 66666422 124677777773
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.02 E-value=3.9e-10 Score=116.48 Aligned_cols=189 Identities=32% Similarity=0.437 Sum_probs=92.8
Q ss_pred EEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCc-CCcEEeccCCCCCcccCCcc-CCCCCCEEEeeCCCC
Q 043408 28 LNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLN-KLIVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSN 105 (492)
Q Consensus 28 L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~-~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~~c~~ 105 (492)
++++.+........+...++++.|++.+ ..+..+++.+..+. +|+.|+++++. +..+|..+ .+++|+.|++++| .
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N-~ 174 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN-D 174 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCC-cccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc-h
Confidence 4444444333333333444555555544 33444444444443 55555555543 44443222 4555555555552 3
Q ss_pred CcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccccccccc
Q 043408 106 LMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIV 185 (492)
Q Consensus 106 l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~ 185 (492)
+..+|...+.+++|+.|++++|. +..+|..+..+..|++|.+++|. ....+..+.++..+..+.+.++++..++..++
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~ 252 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDLPESIG 252 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeeccchhc
Confidence 44444444455555555555532 33344444444445555555532 22333444555555555555555555555555
Q ss_pred cCCCCcccccCCCc--CCccccCCCCCCcEEecCCCccc
Q 043408 186 CLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFE 222 (492)
Q Consensus 186 ~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~ 222 (492)
.+++|+.|++.++. .++. ++.+.+++.|++++|.+.
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 253 NLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccccceecccccccccccc-ccccCccCEEeccCcccc
Confidence 55555555555554 2333 556666666666666543
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.84 E-value=2.6e-10 Score=116.34 Aligned_cols=211 Identities=26% Similarity=0.389 Sum_probs=134.4
Q ss_pred EEEccCCCcccccccccC--CCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408 4 SLEMPHSSIKQLWKGVQR--LVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR 81 (492)
Q Consensus 4 ~L~L~~s~i~~l~~~~~~--l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~ 81 (492)
+|.|++.+++..|.+-.. +.--...||+.|++.....++..+..|+.+.|.. .-+..+|..+.++..|.+|||+.|.
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhccch
Confidence 355666677766643322 3344567788877654333466777777777766 3456677788888888888888765
Q ss_pred CCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCccccc
Q 043408 82 SLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNEL 161 (492)
Q Consensus 82 ~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l 161 (492)
+..+|..+..--|+.|.+++ ++++.+|..++.+..|..||.+.| .+..+|..+
T Consensus 133 -lS~lp~~lC~lpLkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~n-------------------------ei~slpsql 185 (722)
T KOG0532|consen 133 -LSHLPDGLCDLPLKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKN-------------------------EIQSLPSQL 185 (722)
T ss_pred -hhcCChhhhcCcceeEEEec-CccccCCcccccchhHHHhhhhhh-------------------------hhhhchHHh
Confidence 67777766444477777766 345555555555455555554443 334455555
Q ss_pred CCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhh---cCccccc
Q 043408 162 GNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESII---CLSHLYW 236 (492)
Q Consensus 162 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~---~l~~L~~ 236 (492)
+.+.+|+.|.+..|.+..+|..+..| .|..||++.|+ .+|-.|.+|..|+.|.|.+|.+.+-|..|. ...=.++
T Consensus 186 ~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKy 264 (722)
T KOG0532|consen 186 GYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKY 264 (722)
T ss_pred hhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeee
Confidence 55555555555555555555555533 35555665555 366778889999999999999998887553 3455688
Q ss_pred ccccccc
Q 043408 237 LRISYCE 243 (492)
Q Consensus 237 L~L~~c~ 243 (492)
|++.-|.
T Consensus 265 L~~qA~q 271 (722)
T KOG0532|consen 265 LSTQACQ 271 (722)
T ss_pred ecchhcc
Confidence 8888884
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=4.4e-10 Score=111.48 Aligned_cols=182 Identities=21% Similarity=0.193 Sum_probs=128.1
Q ss_pred CceEEEccCCCccccc--ccccCCCCCcEEEccCCCCCCCCC---CCCCCCCccEEEeeCcccCcccccc-ccCCcCCcE
Q 043408 1 NLVSLEMPHSSIKQLW--KGVQRLVNLKHLNLSHSEHLTKIP---DLSLATNLESLTFRGCTSLLETHSS-IQYLNKLIV 74 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~--~~~~~l~~L~~L~Ls~~~~l~~~p---~l~~~~nL~~L~L~~c~~l~~~~~s-i~~L~~L~~ 74 (492)
+|+++.|.++.+.... +-.+.|++++.||||+|-+..-.+ -...+++|+.|+|+.|...--..+. -..++.|+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 4778888888888666 356789999999999985543222 2567999999999986544322221 235789999
Q ss_pred EeccCCCCCc-ccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCcc-ccccCCCCCCCEEeccCC
Q 043408 75 LNLEHCRSLT-SLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGL-PSKICKLKSLERLNLSGC 151 (492)
Q Consensus 75 L~L~~~~~l~-~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~Ls~c 151 (492)
|.|+.|..-. .+.... .+++|+.|++.+|..+.........+..|+.|||++|..+..- -..++.++.|..|+++.|
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence 9999997321 121111 7899999999998644433344556788999999998876532 245778899999999887
Q ss_pred CCCC-Ccccc-----cCCccccccccccccccccccc
Q 043408 152 SNLQ-RLPNE-----LGNLEALKELKAEGIAIREVPS 182 (492)
Q Consensus 152 ~~l~-~lp~~-----l~~l~~L~~L~l~~~~i~~lp~ 182 (492)
.... .+|+. ....++|+.|++..|+|.+.++
T Consensus 282 gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s 318 (505)
T KOG3207|consen 282 GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRS 318 (505)
T ss_pred CcchhcCCCccchhhhcccccceeeecccCccccccc
Confidence 5432 23333 4567889999999998877654
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.75 E-value=6.4e-09 Score=94.05 Aligned_cols=122 Identities=27% Similarity=0.343 Sum_probs=30.7
Q ss_pred CCcEEEccCCCCCCCCCCCC-CCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCcc--CCCCCCEEEe
Q 043408 24 NLKHLNLSHSEHLTKIPDLS-LATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI--HLESLKTLIL 100 (492)
Q Consensus 24 ~L~~L~Ls~~~~l~~~p~l~-~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~L 100 (492)
+++.|+|++|.+. .+..++ .+.+|+.|+|++|. +..+. .+..+++|+.|++++|. ++.+...+ .+++|++|++
T Consensus 20 ~~~~L~L~~n~I~-~Ie~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIENLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccc-cccchhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEEEC
Confidence 3444555444432 233333 24444455554432 22222 23344455555554443 33332211 3445555555
Q ss_pred eCCCCCcccC--ccccCCCCCcEEEcccCCCCCc---cccccCCCCCCCEEeccC
Q 043408 101 SGCSNLMKLP--SSIERLSSLILLNLRNCSRLEG---LPSKICKLKSLERLNLSG 150 (492)
Q Consensus 101 ~~c~~l~~lp--~~i~~l~~L~~L~L~~~~~l~~---lp~~i~~l~~L~~L~Ls~ 150 (492)
++|. +..+. ..+..+++|++|+|.+|+.... -...+..+++|+.||-..
T Consensus 96 ~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 96 SNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred cCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 4432 22111 2345556666666666554321 112345566777776543
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.74 E-value=2.2e-09 Score=101.87 Aligned_cols=125 Identities=27% Similarity=0.227 Sum_probs=71.9
Q ss_pred CCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCccccccccc
Q 043408 93 ESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKA 172 (492)
Q Consensus 93 ~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l 172 (492)
+.|+++++++ +.+..+..++.-+++++.|+++.|..... ..+..+.+|+.|||++| .+.++...-.++.++++|.+
T Consensus 284 q~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSG-NLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccc-cchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeeh
Confidence 3466666666 34555556666666666666666654432 12555666666666663 33333333334445566666
Q ss_pred ccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccc--hhhhcCcccccccccccc
Q 043408 173 EGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIP--ESIICLSHLYWLRISYCE 243 (492)
Q Consensus 173 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~c~ 243 (492)
++|.|+.+ ..++.+-+|..||+++|++..+- ..|++++.|+.+.+.+|+
T Consensus 360 a~N~iE~L----------------------SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 360 AQNKIETL----------------------SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhHhhh----------------------hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 66666554 24455566666677777666433 356667777777666665
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.63 E-value=2e-09 Score=104.21 Aligned_cols=226 Identities=16% Similarity=0.132 Sum_probs=141.6
Q ss_pred ccCCCCCcEEEccCCCCCCCC-----CCCCCCCCccEEEeeCc---ccCcccccc-------ccCCcCCcEEeccCCCCC
Q 043408 19 VQRLVNLKHLNLSHSEHLTKI-----PDLSLATNLESLTFRGC---TSLLETHSS-------IQYLNKLIVLNLEHCRSL 83 (492)
Q Consensus 19 ~~~l~~L~~L~Ls~~~~l~~~-----p~l~~~~nL~~L~L~~c---~~l~~~~~s-------i~~L~~L~~L~L~~~~~l 83 (492)
.-.+..++.|+||+|.+.++. +.+...++|+..++++. .-..++|+. +...++|++||||+|-.-
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 345667777788877766542 23566667777777652 112234433 233457888888877532
Q ss_pred cccC----Ccc-CCCCCCEEEeeCCCCCcc-------------cCccccCCCCCcEEEcccCCCCCc----cccccCCCC
Q 043408 84 TSLS----TSI-HLESLKTLILSGCSNLMK-------------LPSSIERLSSLILLNLRNCSRLEG----LPSKICKLK 141 (492)
Q Consensus 84 ~~lp----~~~-~l~~L~~L~L~~c~~l~~-------------lp~~i~~l~~L~~L~L~~~~~l~~----lp~~i~~l~ 141 (492)
...+ ..+ .+..|++|.|.+|..-.. .-.-+..-++|+++....|..-.. +...+...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 2221 112 577778888877754321 112245567788888777654321 223345567
Q ss_pred CCCEEeccCCCCCCC----cccccCCccccccccccccccc-----ccccccccCCCCcccccCCCc-------CCcccc
Q 043408 142 SLERLNLSGCSNLQR----LPNELGNLEALKELKAEGIAIR-----EVPSSIVCLKNLGRLSFESFK-------ELPECL 205 (492)
Q Consensus 142 ~L~~L~Ls~c~~l~~----lp~~l~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~-------~lp~~l 205 (492)
.|+.+.++.|..... +-..+..+++|+.||+.+|.++ .+...+..+++|+.|++++|. .+-+.+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 788888877654321 2345677888888888888765 344556777888888888875 122222
Q ss_pred -CCCCCCcEEecCCCccc-----ccchhhhcCccccccccccccc
Q 043408 206 -GQLSSLRILFLDKNNFE-----RIPESIICLSHLYWLRISYCER 244 (492)
Q Consensus 206 -~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~c~~ 244 (492)
...++|+.|.+.+|.++ .+-.++...+.|+.|+|++|..
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 34789999999999987 3445677788999999999763
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.60 E-value=4.6e-09 Score=99.66 Aligned_cols=98 Identities=27% Similarity=0.278 Sum_probs=54.9
Q ss_pred ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408 2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR 81 (492)
Q Consensus 2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~ 81 (492)
|++|||++|.|+++.++++-++++++|++|+|.+. .+..+..+++|+.|||++|. +.++...--.|-+++.|+|++|.
T Consensus 286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 286 LTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TVQNLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred hhhccccccchhhhhhhhhhccceeEEecccccee-eehhhhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhhhh
Confidence 56677777777777777777777777777776643 33446666666666666632 33332222334455555555543
Q ss_pred CCcccCCccCCCCCCEEEeeC
Q 043408 82 SLTSLSTSIHLESLKTLILSG 102 (492)
Q Consensus 82 ~l~~lp~~~~l~~L~~L~L~~ 102 (492)
++.+....++-+|..|++++
T Consensus 364 -iE~LSGL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 364 -IETLSGLRKLYSLVNLDLSS 383 (490)
T ss_pred -HhhhhhhHhhhhheeccccc
Confidence 44443333444444444444
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.59 E-value=4.2e-08 Score=88.74 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=4.5
Q ss_pred cccCCccCCCCCCEEEeeCCCCCcccCcccc-CCCCCcEEEcccCC
Q 043408 84 TSLSTSIHLESLKTLILSGCSNLMKLPSSIE-RLSSLILLNLRNCS 128 (492)
Q Consensus 84 ~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~-~l~~L~~L~L~~~~ 128 (492)
+..+...+..++++|+|.|+. +..+ ..++ .+.+|+.|++++|.
T Consensus 10 ~~~~~~~n~~~~~~L~L~~n~-I~~I-e~L~~~l~~L~~L~Ls~N~ 53 (175)
T PF14580_consen 10 EQIAQYNNPVKLRELNLRGNQ-ISTI-ENLGATLDKLEVLDLSNNQ 53 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS-
T ss_pred ccccccccccccccccccccc-cccc-cchhhhhcCCCEEECCCCC
Confidence 334443455556666666632 2222 1232 24445555555443
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.48 E-value=2.9e-07 Score=100.33 Aligned_cols=106 Identities=28% Similarity=0.307 Sum_probs=85.7
Q ss_pred CCcEEeccCCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEecc
Q 043408 71 KLIVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLS 149 (492)
Q Consensus 71 ~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls 149 (492)
.++.|+|++|..-..+|..+ .+++|+.|+|++|...+.+|..++.+++|+.|+|++|...+.+|..++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36778888876555666655 78889999998877777888889999999999999998888899989999999999999
Q ss_pred CCCCCCCcccccCCc-cccccccccccc
Q 043408 150 GCSNLQRLPNELGNL-EALKELKAEGIA 176 (492)
Q Consensus 150 ~c~~l~~lp~~l~~l-~~L~~L~l~~~~ 176 (492)
+|...+.+|..++.. .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 988888888877653 356677777764
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.46 E-value=2.2e-07 Score=101.37 Aligned_cols=102 Identities=26% Similarity=0.340 Sum_probs=66.9
Q ss_pred CcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCccccccccccccccc-ccccccccCCCCcccccCC
Q 043408 119 LILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIR-EVPSSIVCLKNLGRLSFES 197 (492)
Q Consensus 119 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~ 197 (492)
++.|+|.+|...+.+|..++++++|+.|+|++|...+.+|..++.+++|+.|++++|.+. .+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 556666666666666666666666666666666666666666666666666666666665 5666666666666666666
Q ss_pred Cc---CCccccCCC-CCCcEEecCCCc
Q 043408 198 FK---ELPECLGQL-SSLRILFLDKNN 220 (492)
Q Consensus 198 ~~---~lp~~l~~l-~~L~~L~L~~n~ 220 (492)
|. .+|..++.+ .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 54 456555542 456778888886
No 38
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.45 E-value=5.9e-07 Score=91.04 Aligned_cols=64 Identities=30% Similarity=0.542 Sum_probs=40.0
Q ss_pred ccCCcCCcEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccc
Q 043408 66 IQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLP 134 (492)
Q Consensus 66 i~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp 134 (492)
+..+.+++.|++++| .++.+|. -..+|++|.+++|..+..+|..+. ++|++|++++|..+..+|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV--LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC--CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc
Confidence 444677888888877 4777763 234577777777777666665442 456666666655444444
No 39
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.42 E-value=7.3e-07 Score=90.37 Aligned_cols=137 Identities=24% Similarity=0.440 Sum_probs=93.5
Q ss_pred ccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCccCCCCCCEE
Q 043408 19 VQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTL 98 (492)
Q Consensus 19 ~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L 98 (492)
+..+++++.|++++| .++.+|. -..+|++|.+++|..+..+|..+. .+|+.|++++|..+..+|. +|+.|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~-----sLe~L 117 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV--LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE-----SVRSL 117 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC--CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc-----ccceE
Confidence 445789999999998 4566673 345799999999999988887663 6899999999987887775 57778
Q ss_pred EeeCCC--CCcccCccccCCCCCcEEEcccCCCC--CccccccCCCCCCCEEeccCCCCCCCcccccCCccccccccccc
Q 043408 99 ILSGCS--NLMKLPSSIERLSSLILLNLRNCSRL--EGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEG 174 (492)
Q Consensus 99 ~L~~c~--~l~~lp~~i~~l~~L~~L~L~~~~~l--~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~ 174 (492)
++.++. .+..+|+ +|+.|.+.++... ..+|.. -.++|++|++++|.... +|..+. .+|+.|+++.
T Consensus 118 ~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 118 EIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHI 186 (426)
T ss_pred EeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCccc-Cccccc--ccCcEEEecc
Confidence 876532 3455665 4556666543211 111211 12589999999987553 444333 4788888876
Q ss_pred cc
Q 043408 175 IA 176 (492)
Q Consensus 175 ~~ 176 (492)
+.
T Consensus 187 n~ 188 (426)
T PRK15386 187 EQ 188 (426)
T ss_pred cc
Confidence 53
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=6.7e-09 Score=98.54 Aligned_cols=174 Identities=26% Similarity=0.311 Sum_probs=118.6
Q ss_pred ceEEEccCCCcc--cccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccc--cccCCcCCcEEe
Q 043408 2 LVSLEMPHSSIK--QLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHS--SIQYLNKLIVLN 76 (492)
Q Consensus 2 L~~L~L~~s~i~--~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~--si~~L~~L~~L~ 76 (492)
|++|||+++.|+ ++-.-+..|.+|+.|.|.+++.-..+- .+.+-.+|+.|+|++|..+.+..- -+.++..|..||
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 677888888887 555566778889999888876544332 377788999999999888776432 246788899999
Q ss_pred ccCCCCCcccCCcc---CCCCCCEEEeeCCCCCc---ccCccccCCCCCcEEEcccCCCCCc-cccccCCCCCCCEEecc
Q 043408 77 LEHCRSLTSLSTSI---HLESLKTLILSGCSNLM---KLPSSIERLSSLILLNLRNCSRLEG-LPSKICKLKSLERLNLS 149 (492)
Q Consensus 77 L~~~~~l~~lp~~~---~l~~L~~L~L~~c~~l~---~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~i~~l~~L~~L~Ls 149 (492)
|+.|...+.....+ --++|..|+++||...- .+..-...+++|.+|||++|..+.. .-..+.+++.|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 98886443322111 34678888998875422 1222246788999999998876653 33456678889999998
Q ss_pred CCCCCC-CcccccCCcccccccccccc
Q 043408 150 GCSNLQ-RLPNELGNLEALKELKAEGI 175 (492)
Q Consensus 150 ~c~~l~-~lp~~l~~l~~L~~L~l~~~ 175 (492)
.|..+- ..--.++.+++|..|++.|+
T Consensus 347 RCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 347 RCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhcCCChHHeeeeccCcceEEEEeccc
Confidence 886542 11124566777777776654
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.38 E-value=5.6e-08 Score=94.35 Aligned_cols=219 Identities=18% Similarity=0.193 Sum_probs=136.4
Q ss_pred ceEEEccCCCcc-----cccccccCCCCCcEEEccCCCCCC----CCC--------CCCCCCCccEEEeeCcccCccccc
Q 043408 2 LVSLEMPHSSIK-----QLWKGVQRLVNLKHLNLSHSEHLT----KIP--------DLSLATNLESLTFRGCTSLLETHS 64 (492)
Q Consensus 2 L~~L~L~~s~i~-----~l~~~~~~l~~L~~L~Ls~~~~l~----~~p--------~l~~~~nL~~L~L~~c~~l~~~~~ 64 (492)
+++|+|++|.+. .+-..+.+.++|+..++|+- ++. ++| .+..++.|++|+|++|..-..-+.
T Consensus 32 ~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~ 110 (382)
T KOG1909|consen 32 LTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR 110 (382)
T ss_pred eEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence 578889988875 34456667778888888763 222 222 245567888888888754433332
Q ss_pred ----cccCCcCCcEEeccCCCCCcc-------------cCCcc-CCCCCCEEEeeCCCCCc----ccCccccCCCCCcEE
Q 043408 65 ----SIQYLNKLIVLNLEHCRSLTS-------------LSTSI-HLESLKTLILSGCSNLM----KLPSSIERLSSLILL 122 (492)
Q Consensus 65 ----si~~L~~L~~L~L~~~~~l~~-------------lp~~~-~l~~L~~L~L~~c~~l~----~lp~~i~~l~~L~~L 122 (492)
-+.++..|++|.|.+|..-.. ..... .-+.||++...+|..-. .+...+...+.|+.+
T Consensus 111 ~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leev 190 (382)
T KOG1909|consen 111 GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEV 190 (382)
T ss_pred HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceE
Confidence 345577788888887752110 00111 45678888777643221 233345666778888
Q ss_pred EcccCCCCCc----cccccCCCCCCCEEeccCCCCCC----CcccccCCcccccccccccccccc-----ccccc-ccCC
Q 043408 123 NLRNCSRLEG----LPSKICKLKSLERLNLSGCSNLQ----RLPNELGNLEALKELKAEGIAIRE-----VPSSI-VCLK 188 (492)
Q Consensus 123 ~L~~~~~l~~----lp~~i~~l~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~~-----lp~~~-~~l~ 188 (492)
.+..|..... +-..+.++++|+.|||.+|.... .+-..+..+++|+.|++++|.++. +-..+ ...+
T Consensus 191 r~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p 270 (382)
T KOG1909|consen 191 RLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAP 270 (382)
T ss_pred EEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCC
Confidence 8777654431 23445677888888888765542 234456667778888888776651 11111 3367
Q ss_pred CCcccccCCCcC-------CccccCCCCCCcEEecCCCcc
Q 043408 189 NLGRLSFESFKE-------LPECLGQLSSLRILFLDKNNF 221 (492)
Q Consensus 189 ~L~~L~l~~~~~-------lp~~l~~l~~L~~L~L~~n~l 221 (492)
+|+.|.+.+|.. +-..+...+.|+.|+|++|++
T Consensus 271 ~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 271 SLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 788888887762 233455688999999999998
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.32 E-value=8.2e-08 Score=99.83 Aligned_cols=214 Identities=28% Similarity=0.281 Sum_probs=124.8
Q ss_pred CCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCccCCCCCCEEEe
Q 043408 21 RLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLIL 100 (492)
Q Consensus 21 ~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L 100 (492)
.+..++.++++.+.+......+..+.+|+.|++.+ ..+..+...+..+++|++|++++|. ++.+...-.++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccc-cchhhcccchhhhhcchheeccccc-cccccchhhccchhhhee
Confidence 34556666666665444344466777777777776 3444444446667777777777765 555555446666777777
Q ss_pred eCCCCCcccCccccCCCCCcEEEcccCCCCCccc-cccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccc
Q 043408 101 SGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLP-SKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIRE 179 (492)
Q Consensus 101 ~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~ 179 (492)
.+|.. ..+ ..+..++.|+.+++++|.....-+ . ...+..++.+++.+|.... .+.+..+..+..+++..|.+..
T Consensus 148 ~~N~i-~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 148 SGNLI-SDI-SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISK 222 (414)
T ss_pred ccCcc-hhc-cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhccccccee
Confidence 77532 222 234447777777777766544333 1 3566777777777754332 1233334445555666666654
Q ss_pred cccccccCCC--CcccccCCCcC--CccccCCCCCCcEEecCCCcccccchhhhcCcccccccccccc
Q 043408 180 VPSSIVCLKN--LGRLSFESFKE--LPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCE 243 (492)
Q Consensus 180 lp~~~~~l~~--L~~L~l~~~~~--lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~ 243 (492)
+-. +..+.. |+.+.+.++.. ++..+..+..+..|++.+|.+..+. .+.....+..+....++
T Consensus 223 ~~~-l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 223 LEG-LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDNK 288 (414)
T ss_pred ccC-cccchhHHHHHHhcccCccccccccccccccccccchhhccccccc-cccccchHHHhccCcch
Confidence 422 222222 66667666552 3356777788888888888766443 24444555555555544
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.31 E-value=3.6e-08 Score=97.63 Aligned_cols=265 Identities=21% Similarity=0.273 Sum_probs=143.2
Q ss_pred ceEEEccCCCcc---cccccccCCCCCcEEEccCCCCCCCCC--CC-CCCCCccEEEeeCcccCccccc--cccCCcCCc
Q 043408 2 LVSLEMPHSSIK---QLWKGVQRLVNLKHLNLSHSEHLTKIP--DL-SLATNLESLTFRGCTSLLETHS--SIQYLNKLI 73 (492)
Q Consensus 2 L~~L~L~~s~i~---~l~~~~~~l~~L~~L~Ls~~~~l~~~p--~l-~~~~nL~~L~L~~c~~l~~~~~--si~~L~~L~ 73 (492)
|++|+++++.=. .+-.....+++++.|++.+|..++... .+ ..+++|++|+|..|..++..-- -...+++|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 566777665432 344455668888888888887555432 12 3467888888888877665321 123477888
Q ss_pred EEeccCCCCCcc--cCCcc-CCCCCCEEEeeCCCCCcc--cCccccCCCCCcEEEcccCCCCCcc--ccccCCCCCCCEE
Q 043408 74 VLNLEHCRSLTS--LSTSI-HLESLKTLILSGCSNLMK--LPSSIERLSSLILLNLRNCSRLEGL--PSKICKLKSLERL 146 (492)
Q Consensus 74 ~L~L~~~~~l~~--lp~~~-~l~~L~~L~L~~c~~l~~--lp~~i~~l~~L~~L~L~~~~~l~~l--p~~i~~l~~L~~L 146 (492)
+|+++.|..+.. +.... +++.++.+.+.||...+. +-..=.++.-+..+++..|..+... -..-..+..|+.|
T Consensus 220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l 299 (483)
T KOG4341|consen 220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVL 299 (483)
T ss_pred HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhh
Confidence 888888876554 11111 556677776667654431 1111133344555555555444321 1122345566777
Q ss_pred eccCCCCCCCccc-c-cCCcccccccccccccc-c--ccccccccCCCCcccccCCCcCCcc-----ccCCCCCCcEEec
Q 043408 147 NLSGCSNLQRLPN-E-LGNLEALKELKAEGIAI-R--EVPSSIVCLKNLGRLSFESFKELPE-----CLGQLSSLRILFL 216 (492)
Q Consensus 147 ~Ls~c~~l~~lp~-~-l~~l~~L~~L~l~~~~i-~--~lp~~~~~l~~L~~L~l~~~~~lp~-----~l~~l~~L~~L~L 216 (492)
+.++|...+..+- . -....+|+.|-+.+++. . .+...-.+.+.|+.+++.++..+.+ .-.+++.|+.|.|
T Consensus 300 ~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lsl 379 (483)
T KOG4341|consen 300 CYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSL 379 (483)
T ss_pred cccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCCh
Confidence 7776665443221 1 23456666666666542 1 1111123456666677666653322 2245677777777
Q ss_pred CCCc-cccc-----chhhhcCccccccccccccccccCC----CCCcccceeeccccccc
Q 043408 217 DKNN-FERI-----PESIICLSHLYWLRISYCERLKSLP----ELPCDLSDIEAHCCSSL 266 (492)
Q Consensus 217 ~~n~-l~~l-----p~~l~~l~~L~~L~L~~c~~l~~lp----~l~~sL~~L~~~~C~~L 266 (492)
++|. ++.. ...-..+..|..|.+++|+.+..-- ....+|+.+++.+|...
T Consensus 380 shce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 380 SHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred hhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 7776 3311 2222345677788888887654311 01234555555555443
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.9e-08 Score=94.33 Aligned_cols=171 Identities=23% Similarity=0.258 Sum_probs=127.9
Q ss_pred CCCEEEeeCCCCCc-ccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcc--cccCCccccccc
Q 043408 94 SLKTLILSGCSNLM-KLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLP--NELGNLEALKEL 170 (492)
Q Consensus 94 ~L~~L~L~~c~~l~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp--~~l~~l~~L~~L 170 (492)
.|+.|||++..... .+...+..+.+|+.|.|.++..-..+-..|..-.+|+.|++++|+...... -.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 48889998844332 233446789999999999998888888889999999999999998876532 346889999999
Q ss_pred ccccccccc--ccccccc-CCCCcccccCCCcC------CccccCCCCCCcEEecCCCc-cc-ccchhhhcCcccccccc
Q 043408 171 KAEGIAIRE--VPSSIVC-LKNLGRLSFESFKE------LPECLGQLSSLRILFLDKNN-FE-RIPESIICLSHLYWLRI 239 (492)
Q Consensus 171 ~l~~~~i~~--lp~~~~~-l~~L~~L~l~~~~~------lp~~l~~l~~L~~L~L~~n~-l~-~lp~~l~~l~~L~~L~L 239 (492)
+++.|.+.. +...+.. -++|..|+++|+.. +..-...+++|.+|||++|. ++ ..-..+.++..|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 999987641 1111111 24778889988763 22234678999999999998 55 45567888999999999
Q ss_pred ccccccccCCC------CCcccceeeccccccc
Q 043408 240 SYCERLKSLPE------LPCDLSDIEAHCCSSL 266 (492)
Q Consensus 240 ~~c~~l~~lp~------l~~sL~~L~~~~C~~L 266 (492)
+.|..+ +|+ ..++|.+|++.+|-+=
T Consensus 346 sRCY~i--~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 346 SRCYDI--IPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred hhhcCC--ChHHeeeeccCcceEEEEeccccCc
Confidence 999754 232 2578999999998653
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.25 E-value=1.3e-07 Score=98.35 Aligned_cols=193 Identities=31% Similarity=0.317 Sum_probs=132.8
Q ss_pred CCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCC-ccCCCCCCEEEeeCCCCCcccCccccCCCCCcE
Q 043408 43 SLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLST-SIHLESLKTLILSGCSNLMKLPSSIERLSSLIL 121 (492)
Q Consensus 43 ~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~ 121 (492)
..+..++.+++..+ .+..+-..+..+.+|+.|++.+|. ++.+.. .-.+++|++|+++++. +..+ ..+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~-I~~i-~~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNK-ITKL-EGLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchh-hhhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheeccccc-cccc-cchhhccchhh
Confidence 45677777777663 334444457789999999999976 666666 3479999999999954 4433 34677788999
Q ss_pred EEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc-cCCcccccccccccccccccccccccCCCCcccccCCCcC
Q 043408 122 LNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE-LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKE 200 (492)
Q Consensus 122 L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~ 200 (492)
|++.+|..... ..+..+++|+.+++++|.... +... +..+.+++.+++.+|.+..+.. +..+..+..+++..+.-
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~~i~~-~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVD-IENDELSELISLEELDLGGNSIREIEG-LDLLKKLVLLSLLDNKI 220 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhh-hhhhhhhhccchHHHhccCCchhcccc-hHHHHHHHHhhcccccc
Confidence 99999875432 234458899999999975443 3222 5788899999999998886532 22333333344444331
Q ss_pred -CccccCCCCC--CcEEecCCCcccccchhhhcCcccccccccccc
Q 043408 201 -LPECLGQLSS--LRILFLDKNNFERIPESIICLSHLYWLRISYCE 243 (492)
Q Consensus 201 -lp~~l~~l~~--L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~ 243 (492)
--..+..+.. |+.+++++|.+..++..+..+..+..|++.+++
T Consensus 221 ~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 221 SKLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred eeccCcccchhHHHHHHhcccCccccccccccccccccccchhhcc
Confidence 1122333333 889999999988887777888888888888754
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.21 E-value=1.1e-06 Score=65.21 Aligned_cols=57 Identities=28% Similarity=0.396 Sum_probs=39.9
Q ss_pred CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcc
Q 043408 1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCT 57 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~ 57 (492)
+|++|+|++|+|+.++ ..+..+++|++|++++|.+....++ |.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4677788888787777 4566777888888877766443333 6777777777777753
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.94 E-value=5.2e-06 Score=61.50 Aligned_cols=58 Identities=31% Similarity=0.390 Sum_probs=32.6
Q ss_pred CCCCEEEeeCCCCCcccCc-cccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCC
Q 043408 93 ESLKTLILSGCSNLMKLPS-SIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGC 151 (492)
Q Consensus 93 ~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c 151 (492)
++|++|++++| .+..+|. .+.++++|++|++++|.....-|..+.++++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 35666666664 4444443 4566666666666655554444445556666666666554
No 48
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.86 E-value=1.1e-06 Score=87.35 Aligned_cols=229 Identities=19% Similarity=0.205 Sum_probs=149.9
Q ss_pred ccCCCCCcEEEccCCCCCCCCC--C-CCCCCCccEEEeeCcccCcc--ccccccCCcCCcEEeccCCCCCcc--cCCc-c
Q 043408 19 VQRLVNLKHLNLSHSEHLTKIP--D-LSLATNLESLTFRGCTSLLE--THSSIQYLNKLIVLNLEHCRSLTS--LSTS-I 90 (492)
Q Consensus 19 ~~~l~~L~~L~Ls~~~~l~~~p--~-l~~~~nL~~L~L~~c~~l~~--~~~si~~L~~L~~L~L~~~~~l~~--lp~~-~ 90 (492)
-..+++|++|+|-.|..++... . ...+++|++|++++|..+.. +-.-...+++++.+.+++|..++. +-.. .
T Consensus 186 a~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~ 265 (483)
T KOG4341|consen 186 ARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAA 265 (483)
T ss_pred HHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhc
Confidence 3568899999998876665422 1 34688999999999876654 212234456677777778765431 1110 1
Q ss_pred CCCCCCEEEeeCCCCCcccCc--cccCCCCCcEEEcccCCCCCccc--cccCCCCCCCEEeccCCCCCCCcc--cccCCc
Q 043408 91 HLESLKTLILSGCSNLMKLPS--SIERLSSLILLNLRNCSRLEGLP--SKICKLKSLERLNLSGCSNLQRLP--NELGNL 164 (492)
Q Consensus 91 ~l~~L~~L~L~~c~~l~~lp~--~i~~l~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~Ls~c~~l~~lp--~~l~~l 164 (492)
.+.-+.++++..|..+....- .-.++..|++|+.++|......+ .-..+..+|+.|.+++|...+..- ..-.++
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~ 345 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNC 345 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCC
Confidence 455566677777765553321 12457788888888887765432 123456788899998887655432 122466
Q ss_pred cccccccccccccc---ccccccccCCCCcccccCCCcCCccc--------cCCCCCCcEEecCCCccc--ccchhhhcC
Q 043408 165 EALKELKAEGIAIR---EVPSSIVCLKNLGRLSFESFKELPEC--------LGQLSSLRILFLDKNNFE--RIPESIICL 231 (492)
Q Consensus 165 ~~L~~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~~~~lp~~--------l~~l~~L~~L~L~~n~l~--~lp~~l~~l 231 (492)
..|+.+++.++... .+-....+++.|+.|+++.|..+.+. -..+..|+.|.|+++... ..-+.+..+
T Consensus 346 ~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c 425 (483)
T KOG4341|consen 346 PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC 425 (483)
T ss_pred hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhC
Confidence 78888888776543 23334467788999999888755432 245667888999999854 444577788
Q ss_pred cccccccccccccccc
Q 043408 232 SHLYWLRISYCERLKS 247 (492)
Q Consensus 232 ~~L~~L~L~~c~~l~~ 247 (492)
++|+.+++-+|.....
T Consensus 426 ~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 426 RNLERIELIDCQDVTK 441 (483)
T ss_pred cccceeeeechhhhhh
Confidence 8999999998876543
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.72 E-value=1.7e-06 Score=91.24 Aligned_cols=111 Identities=24% Similarity=0.171 Sum_probs=49.8
Q ss_pred ccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccccccccccC
Q 043408 108 KLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCL 187 (492)
Q Consensus 108 ~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l 187 (492)
.+..++.-++.|+.|+|+.|+....- .+..++.|+.|||+.| .+..+|..-..-..|+.|.+.+|.++.+
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lrnN~l~tL------- 247 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLRNNALTTL------- 247 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhhhheeeeecccHHHhh-------
Confidence 33444444455555555554433321 3344444555555542 3333332211112244555555544443
Q ss_pred CCCcccccCCCcCCccccCCCCCCcEEecCCCcccccc--hhhhcCcccccccccccc
Q 043408 188 KNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIP--ESIICLSHLYWLRISYCE 243 (492)
Q Consensus 188 ~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~c~ 243 (492)
.++.++.+|+.||++.|-+.... ..+..|..|+.|+|.+|+
T Consensus 248 ---------------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 248 ---------------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ---------------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 23445555555555555544211 134445555666665554
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.69 E-value=7.1e-07 Score=93.97 Aligned_cols=85 Identities=38% Similarity=0.337 Sum_probs=35.2
Q ss_pred ccccccCCcCCcEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCcc-ccCCCCCcEEEcccCCCCCccccccCCC
Q 043408 62 THSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSS-IERLSSLILLNLRNCSRLEGLPSKICKL 140 (492)
Q Consensus 62 ~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~i~~l 140 (492)
+..++.-++.|+.|||++|+ +........++.|++|||++| .+..+|.. ...+. |+.|.+++|....- ..+.+|
T Consensus 179 mD~SLqll~ale~LnLshNk-~~~v~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~L 253 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNK-FTKVDNLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENL 253 (1096)
T ss_pred HHHHHHHHHHhhhhccchhh-hhhhHHHHhcccccccccccc-hhccccccchhhhh-heeeeecccHHHhh--hhHHhh
Confidence 33344444455555555544 222222124555555555542 23333322 12222 55555554432221 123445
Q ss_pred CCCCEEeccCC
Q 043408 141 KSLERLNLSGC 151 (492)
Q Consensus 141 ~~L~~L~Ls~c 151 (492)
++|+.||++.|
T Consensus 254 ksL~~LDlsyN 264 (1096)
T KOG1859|consen 254 KSLYGLDLSYN 264 (1096)
T ss_pred hhhhccchhHh
Confidence 55555555543
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.61 E-value=3.7e-05 Score=52.79 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=32.6
Q ss_pred CCCcEEecCCCcccccchhhhcCccccccccccccccccCCC
Q 043408 209 SSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPE 250 (492)
Q Consensus 209 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~ 250 (492)
++|++|++++|+++.+|..+.++++|+.|++++|+ +++++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 47899999999999999889999999999999974 555544
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.41 E-value=0.00014 Score=49.90 Aligned_cols=35 Identities=34% Similarity=0.453 Sum_probs=25.1
Q ss_pred CceEEEccCCCcccccccccCCCCCcEEEccCCCC
Q 043408 1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEH 35 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~ 35 (492)
+|++|++++|+|+.++..+..|++|+.|++++|.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 57778888888887776677788888888877754
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.39 E-value=6.7e-05 Score=82.24 Aligned_cols=131 Identities=25% Similarity=0.245 Sum_probs=77.2
Q ss_pred CCccEEEeeCcccCcc-cccccc-CCcCCcEEeccCCCCCc-ccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcE
Q 043408 46 TNLESLTFRGCTSLLE-THSSIQ-YLNKLIVLNLEHCRSLT-SLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLIL 121 (492)
Q Consensus 46 ~nL~~L~L~~c~~l~~-~~~si~-~L~~L~~L~L~~~~~l~-~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~ 121 (492)
.+|++|+++|.+.+.. .+..++ .||.|+.|.+++-.... .+.... ++++|+.||+++++ +..+ ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 5778888877544422 333444 36788888777622111 111111 67888888888854 3333 56778888888
Q ss_pred EEcccCCCCC-ccccccCCCCCCCEEeccCCCCCCCc--c----cccCCccccccccccccccc
Q 043408 122 LNLRNCSRLE-GLPSKICKLKSLERLNLSGCSNLQRL--P----NELGNLEALKELKAEGIAIR 178 (492)
Q Consensus 122 L~L~~~~~l~-~lp~~i~~l~~L~~L~Ls~c~~l~~l--p----~~l~~l~~L~~L~l~~~~i~ 178 (492)
|.+.+-.... ..-..+.+|++|+.||+|.-.....- . +.-..+++|+.||.++|.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 8777643332 22234677888888888874332211 1 12234677888888877654
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.36 E-value=7.4e-05 Score=81.90 Aligned_cols=104 Identities=21% Similarity=0.286 Sum_probs=43.4
Q ss_pred CCCCEEEeeCCCCCc-ccCcccc-CCCCCcEEEcccCCCCC-ccccccCCCCCCCEEeccCCCCCCCcccccCCcccccc
Q 043408 93 ESLKTLILSGCSNLM-KLPSSIE-RLSSLILLNLRNCSRLE-GLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKE 169 (492)
Q Consensus 93 ~~L~~L~L~~c~~l~-~lp~~i~-~l~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~ 169 (492)
.+|+.|+++|..... ..|..++ .+|+|+.|.+.+-.... .+-.-..++++|..||+|+++ +..+ ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 455666665532221 1122222 24555555555422111 112223344555555555532 2222 34445555555
Q ss_pred cccccccccccc--cccccCCCCcccccCCC
Q 043408 170 LKAEGIAIREVP--SSIVCLKNLGRLSFESF 198 (492)
Q Consensus 170 L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~ 198 (492)
|.+.+-.++.-. ..+.+|++|+.||++..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 554444333211 23344555555555543
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=4.9e-05 Score=72.73 Aligned_cols=78 Identities=26% Similarity=0.295 Sum_probs=38.9
Q ss_pred eEEEccCCCccc---ccccccCCCCCcEEEccCCCCCCCCCCC-CCCCCccEEEeeCcc-cCccccccccCCcCCcEEec
Q 043408 3 VSLEMPHSSIKQ---LWKGVQRLVNLKHLNLSHSEHLTKIPDL-SLATNLESLTFRGCT-SLLETHSSIQYLNKLIVLNL 77 (492)
Q Consensus 3 ~~L~L~~s~i~~---l~~~~~~l~~L~~L~Ls~~~~l~~~p~l-~~~~nL~~L~L~~c~-~l~~~~~si~~L~~L~~L~L 77 (492)
++|||.+|.|.. +-.-+.+++.|++|+|+.|.....+..+ ....||+.|.|.|.. .....-.++..+++++.|.+
T Consensus 74 ~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHm 153 (418)
T KOG2982|consen 74 KELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHM 153 (418)
T ss_pred hhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhh
Confidence 456666666652 2222345666666666666554333222 244566666665521 11223334445555555555
Q ss_pred cCC
Q 043408 78 EHC 80 (492)
Q Consensus 78 ~~~ 80 (492)
+.|
T Consensus 154 S~N 156 (418)
T KOG2982|consen 154 SDN 156 (418)
T ss_pred ccc
Confidence 554
No 56
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.28 E-value=4.1e-05 Score=80.70 Aligned_cols=130 Identities=32% Similarity=0.380 Sum_probs=83.7
Q ss_pred CCCCCcEEEccCCCCCCCC---CCCCCCCCccEEEeeCc-ccCcccc----ccccCCcCCcEEeccCCCCCcccCCcc--
Q 043408 21 RLVNLKHLNLSHSEHLTKI---PDLSLATNLESLTFRGC-TSLLETH----SSIQYLNKLIVLNLEHCRSLTSLSTSI-- 90 (492)
Q Consensus 21 ~l~~L~~L~Ls~~~~l~~~---p~l~~~~nL~~L~L~~c-~~l~~~~----~si~~L~~L~~L~L~~~~~l~~lp~~~-- 90 (492)
.+++|+.+.+.++...... +....+++|+.|++++| ......+ .....+++|+.|+++.|..+....-..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 4788899999888766652 34677899999999883 3322222 223456889999999887544322111
Q ss_pred -CCCCCCEEEeeCCCCCc--ccCccccCCCCCcEEEcccCCCCCc--cccccCCCCCCCEEeccC
Q 043408 91 -HLESLKTLILSGCSNLM--KLPSSIERLSSLILLNLRNCSRLEG--LPSKICKLKSLERLNLSG 150 (492)
Q Consensus 91 -~l~~L~~L~L~~c~~l~--~lp~~i~~l~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~Ls~ 150 (492)
.+++|++|.+.+|..+. .+-.....++.|++|+++.|..+.. +.....++++|+.|.+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 47899999988887543 2333456788899999998887632 222233455555555443
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.00044 Score=66.39 Aligned_cols=160 Identities=22% Similarity=0.214 Sum_probs=91.3
Q ss_pred CCCCCCEEEeeCCCCCc--ccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCC-CCcccccCCcccc
Q 043408 91 HLESLKTLILSGCSNLM--KLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNL-QRLPNELGNLEAL 167 (492)
Q Consensus 91 ~l~~L~~L~L~~c~~l~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l-~~lp~~l~~l~~L 167 (492)
..+.+++|+|.+|.... ++...+.+++.|+.|+|+.|.....+-..-..+.+|+.|.|.|.... ......+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 46677777777754322 34445677888888888877654332211134567778877764321 1233345555666
Q ss_pred ccccccccccccc----------cccc--------------------ccCCCCcccccCCCc----CCccccCCCCCCcE
Q 043408 168 KELKAEGIAIREV----------PSSI--------------------VCLKNLGRLSFESFK----ELPECLGQLSSLRI 213 (492)
Q Consensus 168 ~~L~l~~~~i~~l----------p~~~--------------------~~l~~L~~L~l~~~~----~lp~~l~~l~~L~~ 213 (492)
+.|.++.|+.+++ ...+ ..++++..+-+..|. .--.....++.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 6666665543321 1100 112233333333331 11223455677778
Q ss_pred EecCCCcccccc--hhhhcCccccccccccccccccCCC
Q 043408 214 LFLDKNNFERIP--ESIICLSHLYWLRISYCERLKSLPE 250 (492)
Q Consensus 214 L~L~~n~l~~lp--~~l~~l~~L~~L~L~~c~~l~~lp~ 250 (492)
|+|+.|++.++- +.+..++.|..|.+++++....+..
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 889988887543 5788889999999998887766654
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.10 E-value=9.4e-05 Score=77.98 Aligned_cols=111 Identities=32% Similarity=0.465 Sum_probs=58.0
Q ss_pred CCCCccEEEeeCcccCcc--ccccccCCcCCcEEeccCC-CCCcccC-----CccCCCCCCEEEeeCCCCCcccC-ccc-
Q 043408 44 LATNLESLTFRGCTSLLE--THSSIQYLNKLIVLNLEHC-RSLTSLS-----TSIHLESLKTLILSGCSNLMKLP-SSI- 113 (492)
Q Consensus 44 ~~~nL~~L~L~~c~~l~~--~~~si~~L~~L~~L~L~~~-~~l~~lp-----~~~~l~~L~~L~L~~c~~l~~lp-~~i- 113 (492)
..++|+.|.+.+|..+.. +-......++|+.|++++| ......+ ....+.+|+.|++++|..+.... ..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356677777777666655 3344455667777777662 2222111 01145666677776665433211 122
Q ss_pred cCCCCCcEEEcccCCCCC--ccccccCCCCCCCEEeccCCCCC
Q 043408 114 ERLSSLILLNLRNCSRLE--GLPSKICKLKSLERLNLSGCSNL 154 (492)
Q Consensus 114 ~~l~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~Ls~c~~l 154 (492)
..+++|++|.+.+|..+. .+-.....+++|++|++++|...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 235666776666665321 12222334556666666666554
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.09 E-value=5.1e-05 Score=64.74 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=49.7
Q ss_pred Cccccccccccccccccccccccc-CCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhhcCcccccccc
Q 043408 163 NLEALKELKAEGIAIREVPSSIVC-LKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRI 239 (492)
Q Consensus 163 ~l~~L~~L~l~~~~i~~lp~~~~~-l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L 239 (492)
....|+..+|++|.+.++|..+.. ++.++.|++.++. ++|..+..++.|+.|+++.|.+...|..+..+.+|-.|+.
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 334445555555555555554432 2344455555443 4555667777788888888888877777777777777776
Q ss_pred cccc
Q 043408 240 SYCE 243 (492)
Q Consensus 240 ~~c~ 243 (492)
.++.
T Consensus 131 ~~na 134 (177)
T KOG4579|consen 131 PENA 134 (177)
T ss_pred CCCc
Confidence 6654
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.09 E-value=0.0013 Score=59.86 Aligned_cols=95 Identities=18% Similarity=0.284 Sum_probs=47.2
Q ss_pred EEEccCCCcccccccccC-CCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCcccccccc-CCcCCcEEeccCCC
Q 043408 4 SLEMPHSSIKQLWKGVQR-LVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQ-YLNKLIVLNLEHCR 81 (492)
Q Consensus 4 ~L~L~~s~i~~l~~~~~~-l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~-~L~~L~~L~L~~~~ 81 (492)
+++|++.++..+-. ++. +.....+||++|.+ ..++.|..++.|.+|.|.+| .+..+.+.+. .+++|..|.|.+|.
T Consensus 23 e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl-~~l~~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 23 ELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDL-RKLDNLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccccccccccchhh-ccccccccceecccccch-hhcccCCCccccceEEecCC-cceeeccchhhhccccceEEecCcc
Confidence 45555555544422 221 34455666766653 34555666666666666553 3334433333 34556666666554
Q ss_pred CCccc---CCccCCCCCCEEEeeC
Q 043408 82 SLTSL---STSIHLESLKTLILSG 102 (492)
Q Consensus 82 ~l~~l---p~~~~l~~L~~L~L~~ 102 (492)
+..+ -....+++|+.|.+-+
T Consensus 100 -i~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 100 -IQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred -hhhhhhcchhccCCccceeeecC
Confidence 2222 2222445555555544
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.99 E-value=0.00038 Score=65.97 Aligned_cols=173 Identities=18% Similarity=0.193 Sum_probs=85.2
Q ss_pred ceEEEccCCCcc-----cccccccCCCCCcEEEccCCCCCCC------------CCCCCCCCCccEEEeeCcccCccccc
Q 043408 2 LVSLEMPHSSIK-----QLWKGVQRLVNLKHLNLSHSEHLTK------------IPDLSLATNLESLTFRGCTSLLETHS 64 (492)
Q Consensus 2 L~~L~L~~s~i~-----~l~~~~~~l~~L~~L~Ls~~~~l~~------------~p~l~~~~nL~~L~L~~c~~l~~~~~ 64 (492)
+++++|++|.|. .+...+.+-++|+..++++-. +.. .+.+.++|.|+..+|+.|......|+
T Consensus 32 ~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 32 LVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred eeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 577888888875 233445555666666665521 111 12345566666666666655444443
Q ss_pred c----ccCCcCCcEEeccCCCCCcccCC---------------ccCCCCCCEEEeeCCCCCcccC-----ccccCCCCCc
Q 043408 65 S----IQYLNKLIVLNLEHCRSLTSLST---------------SIHLESLKTLILSGCSNLMKLP-----SSIERLSSLI 120 (492)
Q Consensus 65 s----i~~L~~L~~L~L~~~~~l~~lp~---------------~~~l~~L~~L~L~~c~~l~~lp-----~~i~~l~~L~ 120 (492)
. |.+-..|++|.|++|. +.-+.. ..+-+.|++.....|. +...+ ..+..-.+|+
T Consensus 111 ~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLESHENLK 188 (388)
T ss_pred HHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHHhhcCce
Confidence 2 3344566666666654 221110 0134556666555532 22111 1122234566
Q ss_pred EEEcccCCCCCc-----cccccCCCCCCCEEeccCCCCCCC----cccccCCcccccccccccccc
Q 043408 121 LLNLRNCSRLEG-----LPSKICKLKSLERLNLSGCSNLQR----LPNELGNLEALKELKAEGIAI 177 (492)
Q Consensus 121 ~L~L~~~~~l~~-----lp~~i~~l~~L~~L~Ls~c~~l~~----lp~~l~~l~~L~~L~l~~~~i 177 (492)
++.+..|.+... +--.+..+.+|+.|||..|..... +-..+..++.|+.|.+.+|-+
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 666666543321 001223456666666666544321 223344555667776666643
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.75 E-value=0.00045 Score=65.51 Aligned_cols=190 Identities=21% Similarity=0.193 Sum_probs=93.6
Q ss_pred CCCCCCccEEEeeCcccCcc----ccccccCCcCCcEEeccCCCC--C-ccc--------CCccCCCCCCEEEeeCCCCC
Q 043408 42 LSLATNLESLTFRGCTSLLE----THSSIQYLNKLIVLNLEHCRS--L-TSL--------STSIHLESLKTLILSGCSNL 106 (492)
Q Consensus 42 l~~~~nL~~L~L~~c~~l~~----~~~si~~L~~L~~L~L~~~~~--l-~~l--------p~~~~l~~L~~L~L~~c~~l 106 (492)
+..+..+..++|+||+..++ +...|.+-.+|+..++++--. . ..+ +...++++|++.+|+.|..-
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 44577888888988876554 334455667788887765210 0 011 11226677777777765544
Q ss_pred cccCc----cccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCccccccccccccccccccc
Q 043408 107 MKLPS----SIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPS 182 (492)
Q Consensus 107 ~~lp~----~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~ 182 (492)
.+.|. .|++-+.|++|.|.+|..--.-...|++ .|.. |..+. -..+-+.|+......|++...|.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~--la~nK-------Kaa~kp~Le~vicgrNRlengs~ 174 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFH--LAYNK-------KAADKPKLEVVICGRNRLENGSK 174 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHH--HHHHh-------hhccCCCceEEEeccchhccCcH
Confidence 33332 2455566666666665432110000110 0000 00000 01122345555555555543332
Q ss_pred c-----cccCCCCcccccCCCcCCcc--------ccCCCCCCcEEecCCCcccc-----cchhhhcCccccccccccc
Q 043408 183 S-----IVCLKNLGRLSFESFKELPE--------CLGQLSSLRILFLDKNNFER-----IPESIICLSHLYWLRISYC 242 (492)
Q Consensus 183 ~-----~~~l~~L~~L~l~~~~~lp~--------~l~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~c 242 (492)
. +..=.+|..+.+..+..-|. .+..+.+|+.|||..|.|+. +-..+...+.|+.|.+.+|
T Consensus 175 ~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 175 ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 1 11112444444444443333 34566788888888888762 2233444455666666665
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.65 E-value=0.00024 Score=60.68 Aligned_cols=62 Identities=19% Similarity=0.242 Sum_probs=32.8
Q ss_pred cccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchh
Q 043408 166 ALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPES 227 (492)
Q Consensus 166 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~ 227 (492)
.++.|++.+|.|.++|..+..++.|+.|++..+. ..|..+..+.++-.|+..+|....+|..
T Consensus 78 t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 78 TATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred hhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 4455555555555555555555555555554443 2344444455666666666666666544
No 64
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=96.58 E-value=0.0015 Score=36.24 Aligned_cols=20 Identities=55% Similarity=1.077 Sum_probs=18.3
Q ss_pred CceEEEccCCCccccccccc
Q 043408 1 NLVSLEMPHSSIKQLWKGVQ 20 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~~~~ 20 (492)
+|++|+|++|++++||+|.+
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 69999999999999999864
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.51 E-value=0.0011 Score=62.54 Aligned_cols=107 Identities=23% Similarity=0.199 Sum_probs=72.8
Q ss_pred cCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCc--ccCccccccccCCcCCcEEeccCCCC--CcccCCccCCCCC
Q 043408 20 QRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGC--TSLLETHSSIQYLNKLIVLNLEHCRS--LTSLSTSIHLESL 95 (492)
Q Consensus 20 ~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c--~~l~~~~~si~~L~~L~~L~L~~~~~--l~~lp~~~~l~~L 95 (492)
-.+.+|+.+++.++.. +.+..+-.+++|++|.++.| .....++.....+++|++|++++|+. +.+++....+++|
T Consensus 40 d~~~~le~ls~~n~gl-tt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 40 DEFVELELLSVINVGL-TTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccccchhhhhhhccce-eecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 3456666777666543 33445667889999999987 44445555556679999999999873 3455554588889
Q ss_pred CEEEeeCCCCCccc---CccccCCCCCcEEEcccC
Q 043408 96 KTLILSGCSNLMKL---PSSIERLSSLILLNLRNC 127 (492)
Q Consensus 96 ~~L~L~~c~~l~~l---p~~i~~l~~L~~L~L~~~ 127 (492)
..|++.+|....-- -..+.-+++|++|+-...
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 99999998654411 123566788998886654
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.48 E-value=0.0011 Score=62.75 Aligned_cols=106 Identities=26% Similarity=0.186 Sum_probs=67.9
Q ss_pred CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC--CCCcccCCcc-CCCCCCEEEeeCCCCCcccCcc---ccC
Q 043408 42 LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC--RSLTSLSTSI-HLESLKTLILSGCSNLMKLPSS---IER 115 (492)
Q Consensus 42 l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~--~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~---i~~ 115 (492)
...+.+|+.|.+.++..... ..+-.|++|+.|.++.| .....++... .+++|++|++++|..- . +++ +..
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~pl~~ 114 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLRPLKE 114 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccchhhh
Confidence 34456677777665432221 13446889999999998 3333343333 7799999999996543 2 333 566
Q ss_pred CCCCcEEEcccCCCCCcc---ccccCCCCCCCEEeccCC
Q 043408 116 LSSLILLNLRNCSRLEGL---PSKICKLKSLERLNLSGC 151 (492)
Q Consensus 116 l~~L~~L~L~~~~~l~~l---p~~i~~l~~L~~L~Ls~c 151 (492)
+.+|..|++.+|...... -..+.-+++|++|+-...
T Consensus 115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 788899999998765511 122445788888876553
No 67
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.47 E-value=0.0049 Score=56.21 Aligned_cols=99 Identities=21% Similarity=0.285 Sum_probs=72.3
Q ss_pred ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCC-CCCccEEEeeCcccCcccc--ccccCCcCCcEEecc
Q 043408 2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSL-ATNLESLTFRGCTSLLETH--SSIQYLNKLIVLNLE 78 (492)
Q Consensus 2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~-~~nL~~L~L~~c~~l~~~~--~si~~L~~L~~L~L~ 78 (492)
...+||+.|.+..+ ..+..+++|..|.|.+|++...-|++.. +++|+.|.|.+|. +.++- .-+..+++|++|.+-
T Consensus 44 ~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeec
Confidence 45789999999887 4678899999999999998877788655 6889999999864 33322 235668899999988
Q ss_pred CCCCCcccCCc----c-CCCCCCEEEeeCC
Q 043408 79 HCRSLTSLSTS----I-HLESLKTLILSGC 103 (492)
Q Consensus 79 ~~~~l~~lp~~----~-~l~~L~~L~L~~c 103 (492)
+|. ++..... + .+++|++||..+-
T Consensus 122 ~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 876 3222211 1 6777777777653
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.50 E-value=0.0013 Score=62.59 Aligned_cols=96 Identities=21% Similarity=0.259 Sum_probs=57.8
Q ss_pred CCCCCEEeccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCC
Q 043408 140 LKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKN 219 (492)
Q Consensus 140 l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n 219 (492)
+.+.++|++.||.. .++ ....+|+.|+.|.|+-|.|..+ ..+..|++|++|+|..|
T Consensus 18 l~~vkKLNcwg~~L-~DI-sic~kMp~lEVLsLSvNkIssL----------------------~pl~rCtrLkElYLRkN 73 (388)
T KOG2123|consen 18 LENVKKLNCWGCGL-DDI-SICEKMPLLEVLSLSVNKISSL----------------------APLQRCTRLKELYLRKN 73 (388)
T ss_pred HHHhhhhcccCCCc-cHH-HHHHhcccceeEEeeccccccc----------------------hhHHHHHHHHHHHHHhc
Confidence 34455566665422 222 1234555566666666655544 34566778888888888
Q ss_pred cccccc--hhhhcCccccccccccccccccCCC--------CCcccceee
Q 043408 220 NFERIP--ESIICLSHLYWLRISYCERLKSLPE--------LPCDLSDIE 259 (492)
Q Consensus 220 ~l~~lp--~~l~~l~~L~~L~L~~c~~l~~lp~--------l~~sL~~L~ 259 (492)
.|.++- ..++++++|+.|+|..|+.-+.-+. ..++|++|+
T Consensus 74 ~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 74 CIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 877554 3677888888888888776554332 235666655
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.71 E-value=0.014 Score=33.46 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=15.7
Q ss_pred CCcEEecCCCcccccchhhhc
Q 043408 210 SLRILFLDKNNFERIPESIIC 230 (492)
Q Consensus 210 ~L~~L~L~~n~l~~lp~~l~~ 230 (492)
+|++|+|++|+++.+|..+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 477888888888888776543
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.12 E-value=0.024 Score=32.42 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=15.0
Q ss_pred CceEEEccCCCcccccccccC
Q 043408 1 NLVSLEMPHSSIKQLWKGVQR 21 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~~~~~ 21 (492)
+|++|+|++|+|+.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 577788888877777766554
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.62 E-value=0.0046 Score=59.02 Aligned_cols=98 Identities=24% Similarity=0.163 Sum_probs=43.8
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCcc---CCCCCCEE
Q 043408 22 LVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI---HLESLKTL 98 (492)
Q Consensus 22 l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~---~l~~L~~L 98 (492)
+.+.+.|+..+|.+ ..+.-..+++.|+.|.|+-|+.. .+ ..+..+++|+.|.|+.|. +.++.... ++++|++|
T Consensus 18 l~~vkKLNcwg~~L-~DIsic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGL-DDISICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCc-cHHHHHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhH
Confidence 33444455555432 22222344555555555543221 11 123444555555555443 33332211 56666666
Q ss_pred EeeCCCCCcccCc-----cccCCCCCcEEE
Q 043408 99 ILSGCSNLMKLPS-----SIERLSSLILLN 123 (492)
Q Consensus 99 ~L~~c~~l~~lp~-----~i~~l~~L~~L~ 123 (492)
.|..|...+.-+. .+.-|++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 6655444443322 244566666665
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.62 E-value=0.28 Score=41.49 Aligned_cols=100 Identities=20% Similarity=0.325 Sum_probs=44.3
Q ss_pred cccCCCCCcEEEccCCCCCCCCCC--CCCCCCccEEEeeCcccCccccc-cccCCcCCcEEeccCCCCCcccCCcc--CC
Q 043408 18 GVQRLVNLKHLNLSHSEHLTKIPD--LSLATNLESLTFRGCTSLLETHS-SIQYLNKLIVLNLEHCRSLTSLSTSI--HL 92 (492)
Q Consensus 18 ~~~~l~~L~~L~Ls~~~~l~~~p~--l~~~~nL~~L~L~~c~~l~~~~~-si~~L~~L~~L~L~~~~~l~~lp~~~--~l 92 (492)
.+..+.+|+.+.+... ...++. |.++++|+.+.+.+. +..+.. .+..+.+|+.+.+.+ .+..++... .+
T Consensus 7 ~F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNC 80 (129)
T ss_dssp TTTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-
T ss_pred HHhCCCCCCEEEECCC--eeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--ccccccccccccc
Confidence 3455667777776642 233332 666667777777652 444433 344555677777754 244444333 46
Q ss_pred CCCCEEEeeCCCCCcccCc-cccCCCCCcEEEccc
Q 043408 93 ESLKTLILSGCSNLMKLPS-SIERLSSLILLNLRN 126 (492)
Q Consensus 93 ~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~L~~ 126 (492)
++|+.+.+.. .+..++. .+.+. +|+.+.+..
T Consensus 81 ~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 81 TNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTECEEEETT--T-BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccCc--cccEEchhhhcCC-CceEEEECC
Confidence 7777777754 2444433 35555 777776654
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.17 E-value=0.053 Score=28.93 Aligned_cols=17 Identities=35% Similarity=0.596 Sum_probs=8.3
Q ss_pred CCCcEEecCCCcccccc
Q 043408 209 SSLRILFLDKNNFERIP 225 (492)
Q Consensus 209 ~~L~~L~L~~n~l~~lp 225 (492)
++|+.|+|++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 35666777777666554
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.25 E-value=0.75 Score=38.76 Aligned_cols=79 Identities=20% Similarity=0.338 Sum_probs=33.8
Q ss_pred CCCCCCccEEEeeCcccCccccc-cccCCcCCcEEeccCCCCCcccCCcc--CCCCCCEEEeeCCCCCcccCc-cccCCC
Q 043408 42 LSLATNLESLTFRGCTSLLETHS-SIQYLNKLIVLNLEHCRSLTSLSTSI--HLESLKTLILSGCSNLMKLPS-SIERLS 117 (492)
Q Consensus 42 l~~~~nL~~L~L~~c~~l~~~~~-si~~L~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~L~~c~~l~~lp~-~i~~l~ 117 (492)
|.++++|+.+.+.. .+..+.. .+..+.+|+.+.+.+. +..++... ++++|+.+.+.+ .+..++. .+..++
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred HhCCCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--cccccccccccccc
Confidence 56666777777653 2333433 3445556777766552 45544433 455666666643 2222322 344455
Q ss_pred CCcEEEccc
Q 043408 118 SLILLNLRN 126 (492)
Q Consensus 118 ~L~~L~L~~ 126 (492)
+|+.+++..
T Consensus 82 ~l~~i~~~~ 90 (129)
T PF13306_consen 82 NLKNIDIPS 90 (129)
T ss_dssp TECEEEETT
T ss_pred cccccccCc
Confidence 666665543
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.93 E-value=0.37 Score=28.51 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=17.4
Q ss_pred CCCCcEEecCCCcccccchhh
Q 043408 208 LSSLRILFLDKNNFERIPESI 228 (492)
Q Consensus 208 l~~L~~L~L~~n~l~~lp~~l 228 (492)
+++|+.|+|++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467899999999999888754
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.93 E-value=0.37 Score=28.51 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=17.4
Q ss_pred CCCCcEEecCCCcccccchhh
Q 043408 208 LSSLRILFLDKNNFERIPESI 228 (492)
Q Consensus 208 l~~L~~L~L~~n~l~~lp~~l 228 (492)
+++|+.|+|++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467899999999999888754
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.07 E-value=0.08 Score=48.50 Aligned_cols=60 Identities=22% Similarity=0.408 Sum_probs=25.4
Q ss_pred ccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCc-c--CCCCCCEEEeeCCCCCc
Q 043408 48 LESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTS-I--HLESLKTLILSGCSNLM 107 (492)
Q Consensus 48 L~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~-~--~l~~L~~L~L~~c~~l~ 107 (492)
++.+|-+++..-.+-...+.+++.++.|.+.+|+.+....-. + -.++|+.|++++|..++
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence 344444443333333333444555555555555543321100 0 23455555555555443
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.55 E-value=0.08 Score=48.48 Aligned_cols=79 Identities=19% Similarity=0.283 Sum_probs=53.5
Q ss_pred CCcEEEccCCCCCCC-CCCCCCCCCccEEEeeCcccCccccc-ccc-CCcCCcEEeccCCCCCcccCCcc--CCCCCCEE
Q 043408 24 NLKHLNLSHSEHLTK-IPDLSLATNLESLTFRGCTSLLETHS-SIQ-YLNKLIVLNLEHCRSLTSLSTSI--HLESLKTL 98 (492)
Q Consensus 24 ~L~~L~Ls~~~~l~~-~p~l~~~~nL~~L~L~~c~~l~~~~~-si~-~L~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L 98 (492)
.++.+|-+++.+..+ +..+..++.++.|.+.+|..+....- .++ -.++|+.|++++|..+++..-.. .+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 456788888776544 34577888888888888887654321 122 35789999999998777543221 67777777
Q ss_pred EeeC
Q 043408 99 ILSG 102 (492)
Q Consensus 99 ~L~~ 102 (492)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7765
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=85.43 E-value=0.0091 Score=62.91 Aligned_cols=177 Identities=24% Similarity=0.255 Sum_probs=96.4
Q ss_pred ceEEEccCCCcc-----cccccccCCCCCcEEEccCCCCCCCC-----CCCCCC-CCccEEEeeCcccCcc----ccccc
Q 043408 2 LVSLEMPHSSIK-----QLWKGVQRLVNLKHLNLSHSEHLTKI-----PDLSLA-TNLESLTFRGCTSLLE----THSSI 66 (492)
Q Consensus 2 L~~L~L~~s~i~-----~l~~~~~~l~~L~~L~Ls~~~~l~~~-----p~l~~~-~nL~~L~L~~c~~l~~----~~~si 66 (492)
+..|.|.+|.+. .+-.++.....|..|++++|.+...- ..+... ..|++|++..|....+ +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 445666666665 23455667777888888887665221 112222 4566677766654332 33344
Q ss_pred cCCcCCcEEeccCCCCCcc--------cCCcc-CCCCCCEEEeeCCCCCc----ccCccccCCCC-CcEEEcccCCCCCc
Q 043408 67 QYLNKLIVLNLEHCRSLTS--------LSTSI-HLESLKTLILSGCSNLM----KLPSSIERLSS-LILLNLRNCSRLEG 132 (492)
Q Consensus 67 ~~L~~L~~L~L~~~~~l~~--------lp~~~-~l~~L~~L~L~~c~~l~----~lp~~i~~l~~-L~~L~L~~~~~l~~ 132 (492)
.....|+.++++.|..... ++... ...++++|++.+|.... .+...+...+. +..|++..|..-..
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 4566777777777654211 11101 35567777777765432 12223444445 66677776655432
Q ss_pred ----cccccCCC-CCCCEEeccCCCCCC----CcccccCCccccccccccccccc
Q 043408 133 ----LPSKICKL-KSLERLNLSGCSNLQ----RLPNELGNLEALKELKAEGIAIR 178 (492)
Q Consensus 133 ----lp~~i~~l-~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~ 178 (492)
+...+..+ ..++.++++.|+... .+.+.+..++.++.+.++.|.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 22333344 456777777766543 23444555666777777766553
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=85.16 E-value=0.016 Score=61.05 Aligned_cols=127 Identities=27% Similarity=0.323 Sum_probs=66.0
Q ss_pred CCcEEEcccCCCCC----ccccccCCCCCCCEEeccCCCCCC----CcccccC----Ccccccccccccccccc-----c
Q 043408 118 SLILLNLRNCSRLE----GLPSKICKLKSLERLNLSGCSNLQ----RLPNELG----NLEALKELKAEGIAIRE-----V 180 (492)
Q Consensus 118 ~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~Ls~c~~l~----~lp~~l~----~l~~L~~L~l~~~~i~~-----l 180 (492)
.|++|++..|.... .+...+.....++.++++.|.... .++..+. ...++++|.++++.+.. +
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l 224 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL 224 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence 44445555554433 233344445556666665554321 1122222 35566666666665541 1
Q ss_pred ccccccCCC-CcccccCCCcC-------CccccCCC-CCCcEEecCCCccc-----ccchhhhcCccccccccccccc
Q 043408 181 PSSIVCLKN-LGRLSFESFKE-------LPECLGQL-SSLRILFLDKNNFE-----RIPESIICLSHLYWLRISYCER 244 (492)
Q Consensus 181 p~~~~~l~~-L~~L~l~~~~~-------lp~~l~~l-~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~c~~ 244 (492)
-..+...+. +..|++..+.. +...+..+ ..++.++++.|.++ .+...+..+..++.|.++.|+.
T Consensus 225 ~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 225 DEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 112333333 44556555542 22334444 56677888888765 3555666777777777777653
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=72.27 E-value=2.5 Score=25.28 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=12.7
Q ss_pred CCCcEEecCCCcccccch
Q 043408 209 SSLRILFLDKNNFERIPE 226 (492)
Q Consensus 209 ~~L~~L~L~~n~l~~lp~ 226 (492)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 456777777777777764
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=69.35 E-value=0.42 Score=44.86 Aligned_cols=82 Identities=17% Similarity=0.148 Sum_probs=43.6
Q ss_pred CCCCCCEEeccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEec
Q 043408 139 KLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFL 216 (492)
Q Consensus 139 ~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L 216 (492)
.....+.||++.+ .+..+-..+..++.|..|+++.|.+..+|..++.+..++.+++..+. ..|.+.+..+.++.+++
T Consensus 40 ~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 40 SFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 3444555555542 22233344555566677777777777776666555555555544332 24445555555555555
Q ss_pred CCCcc
Q 043408 217 DKNNF 221 (492)
Q Consensus 217 ~~n~l 221 (492)
.+|.+
T Consensus 119 k~~~~ 123 (326)
T KOG0473|consen 119 KKTEF 123 (326)
T ss_pred ccCcc
Confidence 55543
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=67.27 E-value=0.3 Score=45.88 Aligned_cols=85 Identities=18% Similarity=0.093 Sum_probs=71.4
Q ss_pred cCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhhcCccccccc
Q 043408 161 LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLR 238 (492)
Q Consensus 161 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 238 (492)
+......+.||++.|++..+-..+.-++.|..|+++.+. .+|..++.+..++.+++..|+.+..|.+.+..+.+++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 445566788999999888887778888888888888765 478888888889999999999999999999999999999
Q ss_pred ccccccc
Q 043408 239 ISYCERL 245 (492)
Q Consensus 239 L~~c~~l 245 (492)
+.+++..
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9887643
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=60.49 E-value=4.2 Score=23.96 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=7.8
Q ss_pred cccccccccccccc
Q 043408 232 SHLYWLRISYCERL 245 (492)
Q Consensus 232 ~~L~~L~L~~c~~l 245 (492)
++|+.|+|++|..+
T Consensus 2 ~~L~~L~l~~C~~i 15 (26)
T smart00367 2 PNLRELDLSGCTNI 15 (26)
T ss_pred CCCCEeCCCCCCCc
Confidence 45555666665544
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=60.32 E-value=7.2 Score=23.29 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=12.7
Q ss_pred CCCCcEEecCCCccccc
Q 043408 208 LSSLRILFLDKNNFERI 224 (492)
Q Consensus 208 l~~L~~L~L~~n~l~~l 224 (492)
+++|+.|+|+.|.++.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35788888888887654
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=58.10 E-value=6.5 Score=22.54 Aligned_cols=15 Identities=27% Similarity=0.275 Sum_probs=9.4
Q ss_pred CCCCcEEecCCCccc
Q 043408 208 LSSLRILFLDKNNFE 222 (492)
Q Consensus 208 l~~L~~L~L~~n~l~ 222 (492)
+++|+.|+|++|.++
T Consensus 1 ~~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 1 NPNLETLDLSNNQIT 15 (24)
T ss_dssp -TT-SEEE-TSSBEH
T ss_pred CCCCCEEEccCCcCC
Confidence 367888888888865
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=41.28 E-value=21 Score=21.48 Aligned_cols=14 Identities=43% Similarity=0.458 Sum_probs=11.5
Q ss_pred CCCcEEecCCCccc
Q 043408 209 SSLRILFLDKNNFE 222 (492)
Q Consensus 209 ~~L~~L~L~~n~l~ 222 (492)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 57889999999875
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=38.63 E-value=13 Score=39.53 Aligned_cols=62 Identities=21% Similarity=0.195 Sum_probs=28.2
Q ss_pred CCCCcEEEccCCCCCCC--CCCC-CCCCCccEEEeeCcccCccccccccC--CcCCcEEeccCCCCC
Q 043408 22 LVNLKHLNLSHSEHLTK--IPDL-SLATNLESLTFRGCTSLLETHSSIQY--LNKLIVLNLEHCRSL 83 (492)
Q Consensus 22 l~~L~~L~Ls~~~~l~~--~p~l-~~~~nL~~L~L~~c~~l~~~~~si~~--L~~L~~L~L~~~~~l 83 (492)
.+.+..++|++|++... +..+ ...|+|+.|+|++|.+......++.. ...|+.|-+.||..-
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 44555555555553221 1121 23466666666665333332223322 234555666665533
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=24.11 E-value=32 Score=36.60 Aligned_cols=64 Identities=27% Similarity=0.230 Sum_probs=33.7
Q ss_pred CCcCCcEEeccCCCCCccc---CCcc-CCCCCCEEEeeCCCCCcccCccccCC--CCCcEEEcccCCCCCc
Q 043408 68 YLNKLIVLNLEHCRSLTSL---STSI-HLESLKTLILSGCSNLMKLPSSIERL--SSLILLNLRNCSRLEG 132 (492)
Q Consensus 68 ~L~~L~~L~L~~~~~l~~l---p~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l--~~L~~L~L~~~~~l~~ 132 (492)
+.+.+..++|++|+ +..+ .... ..++|++|+|++|........++..+ ..|++|-+.+|+..+.
T Consensus 216 n~p~i~sl~lsnNr-L~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNR-LYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccch-hhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 34566666676665 3322 2211 56677777777763222222233322 3466777777766553
Done!