Query 043408
Match_columns 492
No_of_seqs 447 out of 4271
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 07:47:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043408.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043408hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.9 2.3E-27 7.8E-32 263.6 19.2 271 1-271 369-722 (768)
2 1ogq_A PGIP-2, polygalacturona 99.9 2E-27 6.8E-32 236.1 14.7 243 23-266 50-304 (313)
3 3rgz_A Protein brassinosteroid 99.9 1.1E-26 3.6E-31 258.2 19.3 289 1-293 344-716 (768)
4 3v47_A TOLL-like receptor 5B a 99.9 9.1E-26 3.1E-30 235.1 20.5 269 1-270 31-387 (455)
5 4eco_A Uncharacterized protein 99.9 2.3E-25 7.7E-30 242.3 20.7 222 1-226 207-474 (636)
6 2id5_A Lingo-1, leucine rich r 99.9 4.5E-25 1.5E-29 231.5 22.0 260 2-263 34-330 (477)
7 1ogq_A PGIP-2, polygalacturona 99.9 5.8E-26 2E-30 225.6 13.6 247 1-249 51-308 (313)
8 3o6n_A APL1; leucine-rich repe 99.9 5.9E-25 2E-29 224.7 21.3 255 1-264 46-329 (390)
9 4eco_A Uncharacterized protein 99.9 1.6E-25 5.4E-30 243.6 17.4 266 1-272 274-584 (636)
10 4ecn_A Leucine-rich repeat pro 99.9 4.5E-25 1.5E-29 245.9 20.5 257 1-263 449-763 (876)
11 4fcg_A Uncharacterized protein 99.9 6E-25 2.1E-29 219.7 19.3 218 1-242 82-311 (328)
12 3vq2_A TLR4, TOLL-like recepto 99.9 8.3E-25 2.8E-29 236.2 19.0 241 2-250 287-538 (606)
13 3t6q_A CD180 antigen; protein- 99.9 1.5E-24 5.2E-29 234.1 20.9 262 1-264 255-534 (606)
14 2z7x_B TOLL-like receptor 1, v 99.9 3.6E-24 1.2E-28 226.9 23.1 254 3-264 3-410 (520)
15 2z81_A CD282 antigen, TOLL-lik 99.9 4.7E-24 1.6E-28 227.5 22.9 267 1-269 27-446 (549)
16 3oja_B Anopheles plasmodium-re 99.9 2.3E-24 8E-29 232.7 20.8 255 1-264 52-335 (597)
17 4ecn_A Leucine-rich repeat pro 99.9 3.3E-24 1.1E-28 238.9 22.2 212 24-241 549-785 (876)
18 3v47_A TOLL-like receptor 5B a 99.9 3E-24 1E-28 223.5 19.7 263 1-264 55-406 (455)
19 2z7x_B TOLL-like receptor 1, v 99.9 4.2E-24 1.4E-28 226.4 20.8 130 138-271 321-461 (520)
20 1xku_A Decorin; proteoglycan, 99.9 1.3E-23 4.6E-28 209.7 23.1 241 2-250 33-280 (330)
21 2ft3_A Biglycan; proteoglycan, 99.9 1.5E-23 5.1E-28 209.6 22.4 254 2-264 35-305 (332)
22 2id5_A Lingo-1, leucine rich r 99.9 7.4E-24 2.5E-28 222.3 20.8 257 3-263 14-282 (477)
23 4fmz_A Internalin; leucine ric 99.9 1.5E-23 5.2E-28 210.5 22.0 250 1-264 45-298 (347)
24 3t6q_A CD180 antigen; protein- 99.9 1.3E-23 4.4E-28 226.9 22.5 240 24-264 255-511 (606)
25 3vq2_A TLR4, TOLL-like recepto 99.9 2.6E-23 9E-28 224.4 24.8 130 1-131 33-167 (606)
26 4fcg_A Uncharacterized protein 99.9 5.4E-24 1.8E-28 212.8 17.7 211 23-259 81-304 (328)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-23 3.8E-28 225.6 20.7 255 3-264 34-439 (562)
28 4fmz_A Internalin; leucine ric 99.9 2.9E-23 1E-27 208.4 22.4 256 1-269 67-326 (347)
29 3bz5_A Internalin-J, INLJ; leu 99.9 5.5E-23 1.9E-27 214.7 23.2 250 1-270 43-303 (457)
30 3o6n_A APL1; leucine-rich repe 99.9 2.5E-23 8.7E-28 212.5 19.9 254 1-264 70-350 (390)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8.1E-23 2.8E-27 218.9 24.5 264 1-272 53-468 (562)
32 2z80_A TOLL-like receptor 2, v 99.9 2.9E-24 9.9E-29 216.7 11.7 254 5-263 36-311 (353)
33 1xku_A Decorin; proteoglycan, 99.9 8E-23 2.7E-27 204.1 21.7 237 1-244 53-305 (330)
34 2ft3_A Biglycan; proteoglycan, 99.9 4E-23 1.4E-27 206.5 19.0 237 1-245 55-307 (332)
35 2z63_A TOLL-like receptor 4, v 99.9 3.5E-23 1.2E-27 221.4 17.9 261 1-264 29-407 (570)
36 3oja_B Anopheles plasmodium-re 99.9 5.4E-23 1.8E-27 222.0 19.2 255 1-264 76-356 (597)
37 1o6v_A Internalin A; bacterial 99.9 2.7E-22 9.2E-27 210.0 22.8 253 1-269 69-346 (466)
38 1ozn_A Reticulon 4 receptor; N 99.9 1.1E-22 3.8E-27 198.8 18.5 217 3-222 14-238 (285)
39 2z66_A Variable lymphocyte rec 99.9 4.5E-23 1.5E-27 203.6 15.8 237 3-243 10-259 (306)
40 3zyj_A Leucine-rich repeat-con 99.9 2.4E-22 8E-27 208.9 21.6 235 3-243 46-290 (440)
41 2z81_A CD282 antigen, TOLL-lik 99.9 8.9E-23 3E-27 217.5 18.8 130 139-270 332-489 (549)
42 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-23 4.3E-28 209.0 11.4 236 2-247 36-277 (317)
43 2z66_A Variable lymphocyte rec 99.9 3.2E-23 1.1E-27 204.6 13.8 220 1-222 29-261 (306)
44 3zyi_A Leucine-rich repeat-con 99.9 2.7E-22 9.3E-27 209.1 21.3 235 3-243 57-301 (452)
45 1o6v_A Internalin A; bacterial 99.9 4.3E-22 1.5E-26 208.4 21.9 249 1-263 47-319 (466)
46 3j0a_A TOLL-like receptor 5; m 99.9 3.1E-22 1E-26 224.6 21.3 262 1-263 25-372 (844)
47 1ziw_A TOLL-like receptor 3; i 99.9 7.5E-22 2.6E-26 216.0 23.1 221 2-222 250-517 (680)
48 1ziw_A TOLL-like receptor 3; i 99.9 6.2E-22 2.1E-26 216.6 21.7 269 1-271 297-601 (680)
49 3j0a_A TOLL-like receptor 5; m 99.9 4.4E-22 1.5E-26 223.3 20.2 259 1-261 49-389 (844)
50 2z80_A TOLL-like receptor 2, v 99.9 1.7E-22 5.8E-27 203.7 14.9 242 1-245 53-314 (353)
51 1ozn_A Reticulon 4 receptor; N 99.9 4.5E-22 1.6E-26 194.4 14.8 242 1-242 33-284 (285)
52 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-23 6.5E-28 207.7 4.7 256 2-267 12-276 (317)
53 3zyi_A Leucine-rich repeat-con 99.9 2E-21 6.8E-26 202.6 20.2 219 1-222 76-303 (452)
54 3oja_A Leucine-rich immune mol 99.9 2.2E-22 7.7E-27 211.8 11.9 214 22-245 33-250 (487)
55 4g8a_A TOLL-like receptor 4; l 99.9 5.1E-21 1.7E-25 206.7 22.3 125 138-263 417-552 (635)
56 2z63_A TOLL-like receptor 4, v 99.9 1.4E-21 4.8E-26 209.0 17.1 255 2-264 259-529 (570)
57 3zyj_A Leucine-rich repeat-con 99.9 3.7E-21 1.3E-25 199.8 19.5 218 1-222 65-292 (440)
58 1wwl_A Monocyte differentiatio 99.9 1.1E-23 3.7E-28 209.0 -0.1 235 20-262 40-305 (312)
59 3g06_A SSPH2 (leucine-rich rep 99.9 4.4E-20 1.5E-24 199.1 26.0 236 1-271 41-278 (622)
60 1jl5_A Outer protein YOPM; leu 99.9 1.3E-21 4.3E-26 204.2 12.6 240 1-263 12-267 (454)
61 3oja_A Leucine-rich immune mol 99.9 6.6E-22 2.2E-26 208.2 9.2 235 1-245 35-275 (487)
62 1jl5_A Outer protein YOPM; leu 99.9 4.3E-20 1.5E-24 192.7 22.8 272 1-312 92-382 (454)
63 3bz5_A Internalin-J, INLJ; leu 99.8 3.8E-20 1.3E-24 193.2 20.9 222 18-258 37-259 (457)
64 1wwl_A Monocyte differentiatio 99.8 3.5E-21 1.2E-25 190.8 8.9 235 2-243 45-307 (312)
65 1p9a_G Platelet glycoprotein I 99.8 9.5E-20 3.2E-24 178.8 19.0 200 19-243 6-206 (290)
66 2z62_A TOLL-like receptor 4, v 99.8 1E-19 3.5E-24 176.8 17.3 216 5-244 12-236 (276)
67 2ast_B S-phase kinase-associat 99.8 3.6E-21 1.2E-25 192.2 6.0 244 2-250 49-311 (336)
68 2o6q_A Variable lymphocyte rec 99.8 5.7E-19 1.9E-23 171.2 21.1 196 3-222 19-218 (270)
69 3g06_A SSPH2 (leucine-rich rep 99.8 4.4E-19 1.5E-23 191.3 20.9 229 1-264 62-295 (622)
70 3rfs_A Internalin B, repeat mo 99.8 1.5E-19 5E-24 175.6 15.1 220 7-257 26-247 (272)
71 3rfs_A Internalin B, repeat mo 99.8 3.3E-19 1.1E-23 173.1 15.2 202 1-233 42-247 (272)
72 1p9a_G Platelet glycoprotein I 99.8 7.1E-19 2.4E-23 172.5 17.3 195 1-222 11-208 (290)
73 2xwt_C Thyrotropin receptor; s 99.8 3.3E-19 1.1E-23 169.5 14.4 193 46-242 31-236 (239)
74 2z62_A TOLL-like receptor 4, v 99.8 1.3E-18 4.5E-23 168.9 18.4 224 27-272 11-249 (276)
75 2o6q_A Variable lymphocyte rec 99.8 2.3E-18 7.8E-23 166.9 20.0 198 23-244 16-217 (270)
76 1h6u_A Internalin H; cell adhe 99.8 1.2E-18 4.1E-23 172.3 17.2 207 8-249 27-233 (308)
77 2xwt_C Thyrotropin receptor; s 99.8 1.3E-18 4.5E-23 165.3 14.3 202 11-220 22-237 (239)
78 1h6u_A Internalin H; cell adhe 99.8 3.1E-18 1.1E-22 169.4 17.2 168 43-242 38-205 (308)
79 4ay9_X Follicle-stimulating ho 99.8 1.8E-18 6.2E-23 174.1 15.3 230 6-241 15-255 (350)
80 2ast_B S-phase kinase-associat 99.8 2.7E-20 9.3E-25 185.7 1.4 227 1-229 71-314 (336)
81 2ca6_A RAN GTPase-activating p 99.8 1.4E-20 5E-25 191.8 -1.0 233 12-244 21-315 (386)
82 4glp_A Monocyte differentiatio 99.8 1.8E-18 6.1E-23 171.1 13.2 217 24-244 65-306 (310)
83 1z7x_W Ribonuclease inhibitor; 99.8 6.8E-20 2.3E-24 190.8 1.6 262 2-264 87-409 (461)
84 4ay9_X Follicle-stimulating ho 99.8 1E-17 3.6E-22 168.5 17.5 231 26-262 12-255 (350)
85 1z7x_W Ribonuclease inhibitor; 99.7 2.9E-20 9.8E-25 193.7 -3.1 264 1-264 4-324 (461)
86 4glp_A Monocyte differentiatio 99.7 5.7E-18 2E-22 167.5 12.2 217 2-222 66-307 (310)
87 3m19_A Variable lymphocyte rec 99.7 6.6E-17 2.3E-21 154.8 18.2 173 2-178 16-192 (251)
88 4g8a_A TOLL-like receptor 4; l 99.7 3.4E-17 1.1E-21 176.7 16.7 135 2-138 54-194 (635)
89 3goz_A Leucine-rich repeat-con 99.7 2.6E-19 8.7E-24 181.2 -0.8 239 4-243 2-295 (362)
90 2ca6_A RAN GTPase-activating p 99.7 8.5E-19 2.9E-23 178.7 1.2 225 1-225 33-319 (386)
91 3cvr_A Invasion plasmid antige 99.7 1.2E-16 4E-21 170.5 17.6 182 24-244 60-242 (571)
92 3m19_A Variable lymphocyte rec 99.7 5.2E-16 1.8E-20 148.5 18.4 177 23-223 14-193 (251)
93 1h6t_A Internalin B; cell adhe 99.7 1.3E-16 4.3E-21 156.5 11.3 169 20-243 43-211 (291)
94 1h6t_A Internalin B; cell adhe 99.7 6.8E-16 2.3E-20 151.3 16.2 170 1-181 47-216 (291)
95 2o6s_A Variable lymphocyte rec 99.6 2.6E-15 8.8E-20 139.3 16.3 174 3-188 10-189 (208)
96 3goz_A Leucine-rich repeat-con 99.6 4.3E-18 1.5E-22 172.2 -3.5 222 1-223 23-298 (362)
97 3cvr_A Invasion plasmid antige 99.6 1.3E-15 4.3E-20 162.6 15.4 175 71-269 60-246 (571)
98 1m9s_A Internalin B; cell inva 99.6 5.3E-16 1.8E-20 167.0 12.2 180 5-196 26-205 (605)
99 4ezg_A Putative uncharacterize 99.6 1E-15 3.6E-20 140.9 12.4 153 20-178 41-194 (197)
100 3ogk_B Coronatine-insensitive 99.6 2.4E-17 8.1E-22 177.1 1.3 124 1-125 193-326 (592)
101 4ezg_A Putative uncharacterize 99.6 1E-15 3.5E-20 141.0 11.5 154 43-222 41-194 (197)
102 1m9s_A Internalin B; cell inva 99.6 2.4E-15 8.1E-20 161.9 14.2 171 1-182 44-214 (605)
103 3ogk_B Coronatine-insensitive 99.6 3.7E-17 1.2E-21 175.6 -0.0 240 1-242 165-446 (592)
104 2o6s_A Variable lymphocyte rec 99.6 1.5E-14 5.1E-19 134.2 16.1 117 113-255 72-188 (208)
105 1xeu_A Internalin C; cellular 99.6 2.3E-15 8E-20 145.2 10.4 169 2-182 21-189 (263)
106 2v9t_B SLIT homolog 2 protein 99.6 2.1E-14 7.3E-19 134.7 15.1 145 4-151 15-162 (220)
107 3e6j_A Variable lymphocyte rec 99.6 5.2E-14 1.8E-18 132.8 16.6 145 4-153 23-171 (229)
108 2p1m_B Transport inhibitor res 99.6 9.6E-17 3.3E-21 172.3 -2.8 199 44-242 103-324 (594)
109 2v70_A SLIT-2, SLIT homolog 2 99.5 3.6E-14 1.2E-18 133.1 13.7 131 47-178 33-166 (220)
110 2xot_A Amphoterin-induced prot 99.5 2.7E-14 9.1E-19 144.2 13.8 122 4-128 22-147 (361)
111 1dce_A Protein (RAB geranylger 99.5 3.2E-17 1.1E-21 175.3 -8.5 190 20-216 346-567 (567)
112 1dce_A Protein (RAB geranylger 99.5 3.7E-17 1.3E-21 174.8 -8.3 192 42-249 345-549 (567)
113 2p1m_B Transport inhibitor res 99.5 3E-16 1E-20 168.4 -1.5 237 1-239 67-345 (594)
114 2xot_A Amphoterin-induced prot 99.5 5.9E-14 2E-18 141.7 14.4 135 92-243 63-200 (361)
115 3e6j_A Variable lymphocyte rec 99.5 1.7E-13 5.9E-18 129.2 15.5 148 73-222 22-172 (229)
116 1xeu_A Internalin C; cellular 99.5 1.3E-13 4.6E-18 132.8 12.7 145 1-155 42-186 (263)
117 2v70_A SLIT-2, SLIT homolog 2 99.5 4.9E-13 1.7E-17 125.3 15.9 148 4-154 15-166 (220)
118 2v9t_B SLIT homolog 2 protein 99.5 4.8E-13 1.6E-17 125.4 15.7 147 26-177 14-164 (220)
119 4b8c_D Glucose-repressible alc 99.5 2.7E-14 9.3E-19 157.1 5.3 116 42-161 220-336 (727)
120 2ell_A Acidic leucine-rich nuc 99.4 1.4E-13 4.8E-18 123.0 8.2 136 92-249 23-163 (168)
121 2ell_A Acidic leucine-rich nuc 99.4 6.1E-13 2.1E-17 118.9 11.7 135 46-182 24-164 (168)
122 2je0_A Acidic leucine-rich nuc 99.4 1.6E-13 5.6E-18 120.0 7.7 128 93-241 17-149 (149)
123 2je0_A Acidic leucine-rich nuc 99.4 5.5E-13 1.9E-17 116.7 7.8 125 22-149 16-148 (149)
124 4b8c_D Glucose-repressible alc 99.4 2.5E-13 8.7E-18 149.4 6.8 149 109-262 216-368 (727)
125 1w8a_A SLIT protein; signaling 99.4 3.8E-12 1.3E-16 116.6 12.6 92 66-157 50-142 (192)
126 1a9n_A U2A', U2A'; complex (nu 99.3 4.7E-12 1.6E-16 114.1 9.0 131 90-243 16-151 (176)
127 2wfh_A SLIT homolog 2 protein 99.3 2.1E-11 7.3E-16 111.7 13.3 127 73-222 13-139 (193)
128 1a9n_A U2A', U2A'; complex (nu 99.3 7.2E-12 2.5E-16 112.9 8.7 129 19-153 15-152 (176)
129 1w8a_A SLIT protein; signaling 99.3 6.8E-11 2.3E-15 108.1 14.1 123 4-129 12-138 (192)
130 3sb4_A Hypothetical leucine ri 99.2 1.1E-11 3.8E-16 123.2 9.1 231 1-238 50-327 (329)
131 2o6r_A Variable lymphocyte rec 99.2 7.5E-11 2.6E-15 106.1 13.3 126 4-156 11-139 (177)
132 2o6r_A Variable lymphocyte rec 99.2 7.6E-11 2.6E-15 106.1 13.3 128 73-223 10-138 (177)
133 2wfh_A SLIT homolog 2 protein 99.2 6.1E-11 2.1E-15 108.7 12.2 125 26-154 13-139 (193)
134 1ds9_A Outer arm dynein; leuci 99.1 5.7E-13 1.9E-17 122.6 -6.9 114 106-223 37-154 (198)
135 1ds9_A Outer arm dynein; leuci 99.1 5.7E-13 1.9E-17 122.6 -7.1 125 42-171 44-180 (198)
136 2r9u_A Variable lymphocyte rec 99.0 7.9E-10 2.7E-14 99.4 10.0 109 97-229 16-125 (174)
137 3g39_A Variable lymphocyte rec 99.0 1E-09 3.4E-14 98.3 9.9 106 96-224 12-117 (170)
138 4fdw_A Leucine rich hypothetic 99.0 1.3E-08 4.3E-13 104.0 18.0 226 2-243 115-356 (401)
139 4fdw_A Leucine rich hypothetic 99.0 2.7E-08 9.3E-13 101.5 19.4 224 21-262 111-354 (401)
140 2r9u_A Variable lymphocyte rec 98.9 3.6E-09 1.2E-13 95.1 11.0 107 73-182 15-122 (174)
141 3g39_A Variable lymphocyte rec 98.9 4.3E-09 1.5E-13 94.2 10.9 105 72-178 11-115 (170)
142 3sb4_A Hypothetical leucine ri 98.8 5.3E-09 1.8E-13 103.7 8.5 54 1-55 102-157 (329)
143 3un9_A NLR family member X1; l 98.8 2.9E-10 9.9E-15 115.0 -1.8 158 69-243 71-250 (372)
144 2ifg_A High affinity nerve gro 98.7 2.5E-08 8.7E-13 99.4 8.1 84 98-182 13-97 (347)
145 2ifg_A High affinity nerve gro 98.7 6.2E-08 2.1E-12 96.5 10.0 86 91-178 29-116 (347)
146 3un9_A NLR family member X1; l 98.6 1.9E-09 6.3E-14 109.1 -3.0 109 70-178 101-224 (372)
147 2ra8_A Uncharacterized protein 98.5 3.8E-08 1.3E-12 98.9 3.9 159 65-243 167-341 (362)
148 2ra8_A Uncharacterized protein 98.5 6.9E-08 2.4E-12 97.0 5.7 162 14-178 130-320 (362)
149 4fs7_A Uncharacterized protein 98.5 2.5E-06 8.6E-11 86.5 16.1 34 91-126 160-194 (394)
150 4h09_A Hypothetical leucine ri 98.1 0.00033 1.1E-08 70.2 21.6 248 2-271 48-340 (379)
151 4fs7_A Uncharacterized protein 98.0 6.9E-05 2.4E-09 75.8 15.5 228 17-269 156-393 (394)
152 4gt6_A Cell surface protein; l 98.0 0.00021 7.3E-09 72.2 18.8 266 12-303 51-367 (394)
153 3e4g_A ATP synthase subunit S, 98.0 2.4E-06 8.2E-11 76.2 3.1 95 14-108 52-154 (176)
154 4gt6_A Cell surface protein; l 98.0 0.00028 9.4E-09 71.3 18.5 96 2-102 66-169 (394)
155 3e4g_A ATP synthase subunit S, 97.9 6.9E-06 2.4E-10 73.3 5.0 85 45-129 60-151 (176)
156 1io0_A Tropomodulin; LRR prote 97.9 4.2E-06 1.4E-10 75.6 3.2 117 111-243 30-162 (185)
157 4h09_A Hypothetical leucine ri 97.8 0.001 3.5E-08 66.5 18.1 225 2-239 93-340 (379)
158 1io0_A Tropomodulin; LRR prote 97.7 7.1E-06 2.4E-10 74.1 0.7 116 91-222 34-164 (185)
159 3rw6_A Nuclear RNA export fact 97.4 7.1E-05 2.4E-09 71.5 3.1 94 5-100 148-258 (267)
160 3rw6_A Nuclear RNA export fact 97.2 0.00024 8.4E-09 67.7 4.3 79 114-194 167-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 95.3 0.009 3.1E-07 54.0 3.2 66 113-178 37-111 (197)
162 1pgv_A TMD-1, tropomodulin TMD 94.7 0.014 4.7E-07 52.8 2.7 61 92-152 40-109 (197)
163 3rfe_A Platelet glycoprotein I 94.2 0.058 2E-06 45.1 5.4 51 4-56 12-65 (130)
164 3rfe_A Platelet glycoprotein I 94.1 0.041 1.4E-06 46.1 4.1 35 209-243 31-66 (130)
165 2lz0_A Uncharacterized protein 30.8 58 0.002 25.1 4.4 45 9-55 5-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=2.3e-27 Score=263.56 Aligned_cols=271 Identities=23% Similarity=0.242 Sum_probs=195.3
Q ss_pred CceEEEccCCCcc-cccccccC--CCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEe
Q 043408 1 NLVSLEMPHSSIK-QLWKGVQR--LVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLN 76 (492)
Q Consensus 1 nL~~L~L~~s~i~-~l~~~~~~--l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~ 76 (492)
+|++|+|++|++. .++..+.. +++|++|++++|.+...+|. +.++++|++|+|++|.....+|..++.+++|+.|+
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 3677777777776 34444444 66777777777766655554 66777777777777766666677777777777777
Q ss_pred ccCCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCC
Q 043408 77 LEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQ 155 (492)
Q Consensus 77 L~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~ 155 (492)
+++|.....+|..+ .+++|++|++++|...+.+|..+.++++|++|++++|...+.+|.+++.+++|++|++++|...+
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence 77776544566555 67777777777766666677777777777777777777777777777777777777777776666
Q ss_pred CcccccCCccccccccccccccc-cccc----------------------------------------------------
Q 043408 156 RLPNELGNLEALKELKAEGIAIR-EVPS---------------------------------------------------- 182 (492)
Q Consensus 156 ~lp~~l~~l~~L~~L~l~~~~i~-~lp~---------------------------------------------------- 182 (492)
.+|..++.+++|+.|++++|.+. .+|.
T Consensus 529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence 77777777777777777777655 3443
Q ss_pred ------------------ccccCCCCcccccCCCc---CCccccCCCCCCcEEecCCCccc-ccchhhhcCccccccccc
Q 043408 183 ------------------SIVCLKNLGRLSFESFK---ELPECLGQLSSLRILFLDKNNFE-RIPESIICLSHLYWLRIS 240 (492)
Q Consensus 183 ------------------~~~~l~~L~~L~l~~~~---~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~ 240 (492)
.+..+++|+.|++++|. .+|..++.++.|+.|+|++|.++ .+|..++.+++|+.|+|+
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs 688 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred cccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence 23345678888888876 58888999999999999999987 788899999999999999
Q ss_pred cccccccCCCC---Ccccceeecccccccccccc
Q 043408 241 YCERLKSLPEL---PCDLSDIEAHCCSSLEALSG 271 (492)
Q Consensus 241 ~c~~l~~lp~l---~~sL~~L~~~~C~~L~~l~~ 271 (492)
+|+..+.+|+. .++|+.|+++++.--..+|.
T Consensus 689 ~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp SSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred CCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 98877788865 45678888888754445543
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=2e-27 Score=236.13 Aligned_cols=243 Identities=18% Similarity=0.176 Sum_probs=130.0
Q ss_pred CCCcEEEccCCCCCC--CCCC-CCCCCCccEEEeeC-cccCccccccccCCcCCcEEeccCCCCCcccCCcc-CCCCCCE
Q 043408 23 VNLKHLNLSHSEHLT--KIPD-LSLATNLESLTFRG-CTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI-HLESLKT 97 (492)
Q Consensus 23 ~~L~~L~Ls~~~~l~--~~p~-l~~~~nL~~L~L~~-c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~-~l~~L~~ 97 (492)
.+++.|+|+++.+.. .+|. +.++++|++|+|++ +.....+|..++.+++|++|++++|.....+|..+ ++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 345555555555443 3332 55555555555553 33333455555555555555555554333444433 5555555
Q ss_pred EEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCC-CCCEEeccCCCCCCCcccccCCccccccccccccc
Q 043408 98 LILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLK-SLERLNLSGCSNLQRLPNELGNLEALKELKAEGIA 176 (492)
Q Consensus 98 L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~-~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~ 176 (492)
|++++|.....+|..+..+++|++|++++|...+.+|..++.++ +|++|++++|...+.+|..++.++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 55555444444555555555555555555555545555555555 555555555544445555555554 5555555555
Q ss_pred cc-ccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCccc-ccchhhhcCccccccccccccccccCCCC-
Q 043408 177 IR-EVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFE-RIPESIICLSHLYWLRISYCERLKSLPEL- 251 (492)
Q Consensus 177 i~-~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~l- 251 (492)
+. ..|..+..+++|+.|+++++. ..+..+..+++|++|+|++|.++ .+|..+..+++|+.|++++|+..+.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 55 334445555555555555554 12233555566666666666665 55666666666666666666555555553
Q ss_pred -Ccccceeeccccccc
Q 043408 252 -PCDLSDIEAHCCSSL 266 (492)
Q Consensus 252 -~~sL~~L~~~~C~~L 266 (492)
.++|+.+++.+.+.+
T Consensus 289 ~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCL 304 (313)
T ss_dssp TGGGSCGGGTCSSSEE
T ss_pred cccccChHHhcCCCCc
Confidence 234445555544433
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=1.1e-26 Score=258.17 Aligned_cols=289 Identities=18% Similarity=0.199 Sum_probs=247.2
Q ss_pred CceEEEccCCCcc-cccccccCCC-CCcEEEccCCCCCCCCCC-CCC--CCCccEEEeeCcccCccccccccCCcCCcEE
Q 043408 1 NLVSLEMPHSSIK-QLWKGVQRLV-NLKHLNLSHSEHLTKIPD-LSL--ATNLESLTFRGCTSLLETHSSIQYLNKLIVL 75 (492)
Q Consensus 1 nL~~L~L~~s~i~-~l~~~~~~l~-~L~~L~Ls~~~~l~~~p~-l~~--~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L 75 (492)
+|++|+|++|++. .+|..+..++ +|++|+|++|.+...+|. +.. +++|++|+|++|.....+|..++.+++|++|
T Consensus 344 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 423 (768)
T 3rgz_A 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423 (768)
T ss_dssp TCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEE
T ss_pred CCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEE
Confidence 5899999999998 7888888887 999999999988765553 555 7899999999998888899999999999999
Q ss_pred eccCCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCC
Q 043408 76 NLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNL 154 (492)
Q Consensus 76 ~L~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l 154 (492)
++++|.....+|..+ ++++|++|++++|...+.+|..+..+++|++|++++|...+.+|..+.++++|++|++++|...
T Consensus 424 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 503 (768)
T 3rgz_A 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503 (768)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC
Confidence 999997555777666 8999999999999888889999999999999999999999999999999999999999999988
Q ss_pred CCcccccCCccccccccccccccc-ccccccccCCCCcccccCCCc---CCcc---------------------------
Q 043408 155 QRLPNELGNLEALKELKAEGIAIR-EVPSSIVCLKNLGRLSFESFK---ELPE--------------------------- 203 (492)
Q Consensus 155 ~~lp~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~---~lp~--------------------------- 203 (492)
+.+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|. .+|.
T Consensus 504 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (768)
T 3rgz_A 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSC
T ss_pred CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccc
Confidence 899999999999999999999998 889999999999999998875 2332
Q ss_pred -------------------------------------------ccCCCCCCcEEecCCCccc-ccchhhhcCcccccccc
Q 043408 204 -------------------------------------------CLGQLSSLRILFLDKNNFE-RIPESIICLSHLYWLRI 239 (492)
Q Consensus 204 -------------------------------------------~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L 239 (492)
.++.+++|+.|+|++|+++ .+|..++.+++|+.|+|
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~L 663 (768)
T 3rgz_A 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663 (768)
T ss_dssp CTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEEC
T ss_pred cccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeC
Confidence 3445678999999999998 89999999999999999
Q ss_pred ccccccccCCCC---CcccceeecccccccccccccchhhccCCCCCceeeccccCC
Q 043408 240 SYCERLKSLPEL---PCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQCFDFQHCEV 293 (492)
Q Consensus 240 ~~c~~l~~lp~l---~~sL~~L~~~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~c~l 293 (492)
++|...+.+|+. ..+|+.|+++++.--..+|..+... .....++++++++
T Consensus 664 s~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l----~~L~~L~ls~N~l 716 (768)
T 3rgz_A 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL----TMLTEIDLSNNNL 716 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC----CCCSEEECCSSEE
T ss_pred cCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC----CCCCEEECcCCcc
Confidence 999888899975 4678899998876444555443222 1223566666543
No 4
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=9.1e-26 Score=235.06 Aligned_cols=269 Identities=18% Similarity=0.162 Sum_probs=204.5
Q ss_pred CceEEEccCCCcccc-cccccCCCCCcEEEccCCCCCCCCC--CCCCCCCccEEEeeCcccCccccccccCCcCCcEEec
Q 043408 1 NLVSLEMPHSSIKQL-WKGVQRLVNLKHLNLSHSEHLTKIP--DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNL 77 (492)
Q Consensus 1 nL~~L~L~~s~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L 77 (492)
+|++|+|++|+|+.+ +..+..+++|++|+|++|.....++ .+.++++|++|+|++|......|..++.+++|++|++
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 110 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL 110 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence 589999999999987 5789999999999999998765553 3899999999999998877777888999999999999
Q ss_pred cCCCCCcccCCc--c-CCCCCCEEEeeCCCCCcccCcc-ccCCCCCcEEEcccCCCCCccccccCC--------------
Q 043408 78 EHCRSLTSLSTS--I-HLESLKTLILSGCSNLMKLPSS-IERLSSLILLNLRNCSRLEGLPSKICK-------------- 139 (492)
Q Consensus 78 ~~~~~l~~lp~~--~-~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~i~~-------------- 139 (492)
++|......+.. + .+++|++|++++|......|.. +.++++|++|++++|...+..|..+..
T Consensus 111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n 190 (455)
T 3v47_A 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI 190 (455)
T ss_dssp TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTC
T ss_pred CCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccC
Confidence 998743333332 3 7999999999998766555665 899999999999999877666654443
Q ss_pred --------------------CCCCCEEeccCCCCCCCcccccC-------------------------------------
Q 043408 140 --------------------LKSLERLNLSGCSNLQRLPNELG------------------------------------- 162 (492)
Q Consensus 140 --------------------l~~L~~L~Ls~c~~l~~lp~~l~------------------------------------- 162 (492)
+++|++|++++|...+..|..+.
T Consensus 191 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 270 (455)
T 3v47_A 191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270 (455)
T ss_dssp BCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTG
T ss_pred cccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccc
Confidence 35688888887755433222111
Q ss_pred --Cccccccccccccccccc-ccccccCCCCcccccCCCcC---CccccCCCCCCcEEecCCCccccc-chhhhcCcccc
Q 043408 163 --NLEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESFKE---LPECLGQLSSLRILFLDKNNFERI-PESIICLSHLY 235 (492)
Q Consensus 163 --~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~---lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~ 235 (492)
..++|+.|++++|.+..+ |..+..+++|+.|+++++.- .|..+..+++|+.|+|++|.++.+ |..+..+++|+
T Consensus 271 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 350 (455)
T 3v47_A 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350 (455)
T ss_dssp GGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC
T ss_pred cccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC
Confidence 124678888888887754 56678888899999888762 456788888999999999988865 56778888999
Q ss_pred ccccccccccccCCCC---Ccccceeeccccccccccc
Q 043408 236 WLRISYCERLKSLPEL---PCDLSDIEAHCCSSLEALS 270 (492)
Q Consensus 236 ~L~L~~c~~l~~lp~l---~~sL~~L~~~~C~~L~~l~ 270 (492)
.|++++|......|.. .++|+.|++.++ .++.++
T Consensus 351 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 387 (455)
T 3v47_A 351 VLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVP 387 (455)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred EEECCCCcccccChhhccccccccEEECCCC-ccccCC
Confidence 9999887654443432 467888888775 355444
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=2.3e-25 Score=242.34 Aligned_cols=222 Identities=18% Similarity=0.206 Sum_probs=152.8
Q ss_pred CceEEEccCCCccc------------------cccccc--CCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcc-c
Q 043408 1 NLVSLEMPHSSIKQ------------------LWKGVQ--RLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCT-S 58 (492)
Q Consensus 1 nL~~L~L~~s~i~~------------------l~~~~~--~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~-~ 58 (492)
+|++|+|++|+++. +|..+. .+++|++|+|++|.+...+|. ++++++|++|+|++|. .
T Consensus 207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l 286 (636)
T 4eco_A 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286 (636)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence 58999999999998 999999 999999999999998888886 9999999999999987 4
Q ss_pred Cc-cccccccCC------cCCcEEeccCCCCCcccCC--cc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCC
Q 043408 59 LL-ETHSSIQYL------NKLIVLNLEHCRSLTSLST--SI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCS 128 (492)
Q Consensus 59 l~-~~~~si~~L------~~L~~L~L~~~~~l~~lp~--~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~ 128 (492)
.. .+|..++.+ ++|++|++++|. +..+|. .+ ++++|++|++++|...+.+| .++.+++|++|++++|.
T Consensus 287 ~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~ 364 (636)
T 4eco_A 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ 364 (636)
T ss_dssp CHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE
T ss_pred ccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc
Confidence 44 688888776 899999999886 558887 44 88889999988876554666 66666666666666655
Q ss_pred CCCccccccCCCCC-CCEEeccCCCCCCCcccccCCcc--cccccccccccccc-cccccc-------cCCCCcccccCC
Q 043408 129 RLEGLPSKICKLKS-LERLNLSGCSNLQRLPNELGNLE--ALKELKAEGIAIRE-VPSSIV-------CLKNLGRLSFES 197 (492)
Q Consensus 129 ~l~~lp~~i~~l~~-L~~L~Ls~c~~l~~lp~~l~~l~--~L~~L~l~~~~i~~-lp~~~~-------~l~~L~~L~l~~ 197 (492)
.. .+|..+..+++ |++|++++|... .+|..++.+. +|+.|++++|.+.. +|..+. .+++|+.|++++
T Consensus 365 l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~ 442 (636)
T 4eco_A 365 IT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442 (636)
T ss_dssp EE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCS
T ss_pred cc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcC
Confidence 44 55656666666 666666665433 5555554433 55555555555542 333343 444555555555
Q ss_pred Cc--CCcccc-CCCCCCcEEecCCCcccccch
Q 043408 198 FK--ELPECL-GQLSSLRILFLDKNNFERIPE 226 (492)
Q Consensus 198 ~~--~lp~~l-~~l~~L~~L~L~~n~l~~lp~ 226 (492)
|. .+|..+ ..+++|+.|+|++|.++.+|.
T Consensus 443 N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~ 474 (636)
T 4eco_A 443 NQISKFPKELFSTGSPLSSINLMGNMLTEIPK 474 (636)
T ss_dssp SCCCSCCTHHHHTTCCCSEEECCSSCCSBCCS
T ss_pred CccCcCCHHHHccCCCCCEEECCCCCCCCcCH
Confidence 43 233322 234555555555555554443
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=4.5e-25 Score=231.51 Aligned_cols=260 Identities=20% Similarity=0.162 Sum_probs=152.5
Q ss_pred ceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccc-cccCCcCCcEEecc
Q 043408 2 LVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHS-SIQYLNKLIVLNLE 78 (492)
Q Consensus 2 L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~-si~~L~~L~~L~L~ 78 (492)
|++|+|++|+|+.++ ..+..+++|++|+|++|.+....|. |.++++|++|+|++|. +..+|. .+..+++|++|+|+
T Consensus 34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECT
T ss_pred CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECC
Confidence 566777777776664 4566666777777766655444343 6666666666666644 333333 34566666666666
Q ss_pred CCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccC------------------------CCCCcc
Q 043408 79 HCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNC------------------------SRLEGL 133 (492)
Q Consensus 79 ~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~------------------------~~l~~l 133 (492)
+|......+..+ ++++|++|++++|......+..+.++++|++|++++| ......
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 192 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence 655322223222 4555555555554333333334455555555555554 443333
Q ss_pred ccccCCCCCCCEEeccCCCCCCCcccccCCccccccccccccccccccc-ccccCCCCcccccCCCc--C-CccccCCCC
Q 043408 134 PSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPS-SIVCLKNLGRLSFESFK--E-LPECLGQLS 209 (492)
Q Consensus 134 p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~--~-lp~~l~~l~ 209 (492)
+..+..+++|+.|++++|...+.+|.......+|+.|++++|.++.+|. .+..+++|+.|+++++. . .+..+..++
T Consensus 193 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (477)
T 2id5_A 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272 (477)
T ss_dssp TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT
T ss_pred hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc
Confidence 3345555555666665555555555554445566777777777776663 46677777777777765 2 233567777
Q ss_pred CCcEEecCCCccccc-chhhhcCccccccccccccccccCCCC----Ccccceeecccc
Q 043408 210 SLRILFLDKNNFERI-PESIICLSHLYWLRISYCERLKSLPEL----PCDLSDIEAHCC 263 (492)
Q Consensus 210 ~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~l----~~sL~~L~~~~C 263 (492)
+|+.|+|++|.++.+ |..+..+++|+.|+|++| .++.+|.. .++|+.|++.++
T Consensus 273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred cCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCC
Confidence 777777777777754 556777777777777776 35555531 356666666554
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=5.8e-26 Score=225.59 Aligned_cols=247 Identities=18% Similarity=0.179 Sum_probs=220.6
Q ss_pred CceEEEccCCCcc---cccccccCCCCCcEEEccC-CCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEE
Q 043408 1 NLVSLEMPHSSIK---QLWKGVQRLVNLKHLNLSH-SEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVL 75 (492)
Q Consensus 1 nL~~L~L~~s~i~---~l~~~~~~l~~L~~L~Ls~-~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L 75 (492)
++++|+|+++++. .++..+..+++|++|+|++ |.+...+|. ++++++|++|+|++|.....+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 4789999999998 5889999999999999995 777767775 9999999999999988777899999999999999
Q ss_pred eccCCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCC-CCcEEEcccCCCCCccccccCCCCCCCEEeccCCCC
Q 043408 76 NLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLS-SLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSN 153 (492)
Q Consensus 76 ~L~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~-~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~ 153 (492)
++++|.....+|..+ .+++|++|++++|.....+|..+..++ +|++|++++|...+.+|..+..++ |++|++++|..
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 999987555777766 899999999999876668999999998 999999999998888999999987 99999999888
Q ss_pred CCCcccccCCcccccccccccccccccccccccCCCCcccccCCCc---CCccccCCCCCCcEEecCCCccc-ccchhhh
Q 043408 154 LQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK---ELPECLGQLSSLRILFLDKNNFE-RIPESII 229 (492)
Q Consensus 154 l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~---~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~ 229 (492)
.+..|..++.+++|+.|++++|.+...+..+..+++|+.|++++|. .+|..+..+++|+.|+|++|+++ .+|.. .
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~ 288 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-G 288 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-T
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-c
Confidence 7788899999999999999999999766668899999999999987 57889999999999999999998 67765 8
Q ss_pred cCccccccccccccccccCC
Q 043408 230 CLSHLYWLRISYCERLKSLP 249 (492)
Q Consensus 230 ~l~~L~~L~L~~c~~l~~lp 249 (492)
.+++|+.|++++|+.+...|
T Consensus 289 ~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp TGGGSCGGGTCSSSEEESTT
T ss_pred cccccChHHhcCCCCccCCC
Confidence 89999999999998776554
No 8
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=5.9e-25 Score=224.66 Aligned_cols=255 Identities=17% Similarity=0.110 Sum_probs=180.7
Q ss_pred CceEEEccCCCccccccc-ccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408 1 NLVSLEMPHSSIKQLWKG-VQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE 78 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~ 78 (492)
+|+.|+++++.++.+|.. +..+++|++|+|++|.+....+ .+..+++|++|+|++|......|..++.+++|++|+++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 477888999988888855 5778899999999887655444 48888999999999876555556667888999999998
Q ss_pred CCCCCcccCCcc--CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCC--------------
Q 043408 79 HCRSLTSLSTSI--HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKS-------------- 142 (492)
Q Consensus 79 ~~~~l~~lp~~~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~-------------- 142 (492)
+|. +..+|... ++++|++|++++|......+..+..+++|++|++++|.....- +..+++
T Consensus 126 ~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 126 RND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEE
T ss_pred CCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccccccc
Confidence 875 66777653 7889999999987655544566888899999999888765432 223334
Q ss_pred -----CCEEeccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCcC---CccccCCCCCCcEE
Q 043408 143 -----LERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKE---LPECLGQLSSLRIL 214 (492)
Q Consensus 143 -----L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~---lp~~l~~l~~L~~L 214 (492)
|++|++++|. +..+|. ...++|+.|++++|.+... ..+..+++|+.|+++++.- .|..+..+++|+.|
T Consensus 202 ~~~~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (390)
T 3o6n_A 202 AIPIAVEELDASHNS-INVVRG--PVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277 (390)
T ss_dssp ECCSSCSEEECCSSC-CCEEEC--CCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred CCCCcceEEECCCCe-eeeccc--cccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEE
Confidence 4444444432 222222 1235677777777777765 3567777888888877752 35677777888888
Q ss_pred ecCCCcccccchhhhcCccccccccccccccccCCCC---Ccccceeeccccc
Q 043408 215 FLDKNNFERIPESIICLSHLYWLRISYCERLKSLPEL---PCDLSDIEAHCCS 264 (492)
Q Consensus 215 ~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~~sL~~L~~~~C~ 264 (492)
+|++|+++.+|..+..+++|+.|++++|+ +..+|.. .++|+.|++.++.
T Consensus 278 ~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 278 YISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp ECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred ECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc
Confidence 88888877777767777788888888763 5556542 3567777777664
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=1.6e-25 Score=243.56 Aligned_cols=266 Identities=17% Similarity=0.147 Sum_probs=201.9
Q ss_pred CceEEEccCCC-ccc--ccccccCC------CCCcEEEccCCCCCCCCCC---CCCCCCccEEEeeCcccCccccccccC
Q 043408 1 NLVSLEMPHSS-IKQ--LWKGVQRL------VNLKHLNLSHSEHLTKIPD---LSLATNLESLTFRGCTSLLETHSSIQY 68 (492)
Q Consensus 1 nL~~L~L~~s~-i~~--l~~~~~~l------~~L~~L~Ls~~~~l~~~p~---l~~~~nL~~L~L~~c~~l~~~~~si~~ 68 (492)
+|++|+|++|+ ++. +|..++.+ ++|++|+|++|.+. .+|. ++++++|++|+|++|...+.+| .++.
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~ 351 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS 351 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCC
Confidence 57888888887 774 77777665 88888888888876 6665 8888888888888877666788 7888
Q ss_pred CcCCcEEeccCCCCCcccCCcc-CCCC-CCEEEeeCCCCCcccCccccCCC--CCcEEEcccCCCCCccccccC------
Q 043408 69 LNKLIVLNLEHCRSLTSLSTSI-HLES-LKTLILSGCSNLMKLPSSIERLS--SLILLNLRNCSRLEGLPSKIC------ 138 (492)
Q Consensus 69 L~~L~~L~L~~~~~l~~lp~~~-~l~~-L~~L~L~~c~~l~~lp~~i~~l~--~L~~L~L~~~~~l~~lp~~i~------ 138 (492)
+++|++|++++|. +..+|..+ .+++ |++|++++|. +..+|..+..++ +|++|++++|...+..|..+.
T Consensus 352 l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 352 EIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp EEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred CCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 8888888888876 55777666 7777 8888888865 447887776655 888888888888887777777
Q ss_pred -CCCCCCEEeccCCCCCCCcccc-cCCcccccccccccccccccccccccC--------CCCcccccCCCc--CCccccC
Q 043408 139 -KLKSLERLNLSGCSNLQRLPNE-LGNLEALKELKAEGIAIREVPSSIVCL--------KNLGRLSFESFK--ELPECLG 206 (492)
Q Consensus 139 -~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~l~~~~i~~lp~~~~~l--------~~L~~L~l~~~~--~lp~~l~ 206 (492)
.+++|++|++++|... .+|.. +..+++|+.|++++|.+..+|..+... ++|+.|++++|. .+|..+.
T Consensus 430 ~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 508 (636)
T 4eco_A 430 FKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR 508 (636)
T ss_dssp CCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGS
T ss_pred ccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhh
Confidence 7778888888886544 56654 445788888888888888777654332 278888888775 5777776
Q ss_pred --CCCCCcEEecCCCcccccchhhhcCcccccccccc------ccccccCCCC---Ccccceeeccccccccccccc
Q 043408 207 --QLSSLRILFLDKNNFERIPESIICLSHLYWLRISY------CERLKSLPEL---PCDLSDIEAHCCSSLEALSGL 272 (492)
Q Consensus 207 --~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~------c~~l~~lp~l---~~sL~~L~~~~C~~L~~l~~~ 272 (492)
.+++|+.|+|++|.++.+|..+..+++|+.|++++ |...+.+|.. .++|+.|++.+|.- +.++..
T Consensus 509 ~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK 584 (636)
T ss_dssp TTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred hccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence 88888888888888888888888888888888844 4455666653 46778888877654 666553
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=4.5e-25 Score=245.90 Aligned_cols=257 Identities=18% Similarity=0.178 Sum_probs=192.9
Q ss_pred CceEEEccCCCccc------------------cccccc--CCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcc-c
Q 043408 1 NLVSLEMPHSSIKQ------------------LWKGVQ--RLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCT-S 58 (492)
Q Consensus 1 nL~~L~L~~s~i~~------------------l~~~~~--~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~-~ 58 (492)
+|++|+|++|+++. +|..++ .+++|++|+|++|.+...+|. ++++++|++|+|++|. .
T Consensus 449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l 528 (876)
T 4ecn_A 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI 528 (876)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc
Confidence 58999999999998 999888 999999999999998888886 8999999999999987 4
Q ss_pred Cc-cccccccCCc-------CCcEEeccCCCCCcccCC--cc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccC
Q 043408 59 LL-ETHSSIQYLN-------KLIVLNLEHCRSLTSLST--SI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNC 127 (492)
Q Consensus 59 l~-~~~~si~~L~-------~L~~L~L~~~~~l~~lp~--~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~ 127 (492)
.. .+|..++.+. +|++|++++|. +..+|. .+ ++++|++|++++|... .+| .++.+++|+.|+|++|
T Consensus 529 sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYN 605 (876)
T ss_dssp CHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSS
T ss_pred ccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCC
Confidence 44 5887777665 99999999987 558887 45 8999999999997644 888 8899999999999998
Q ss_pred CCCCccccccCCCCC-CCEEeccCCCCCCCcccccCCccc--cccccccccccccccc----ccc--cCCCCcccccCCC
Q 043408 128 SRLEGLPSKICKLKS-LERLNLSGCSNLQRLPNELGNLEA--LKELKAEGIAIREVPS----SIV--CLKNLGRLSFESF 198 (492)
Q Consensus 128 ~~l~~lp~~i~~l~~-L~~L~Ls~c~~l~~lp~~l~~l~~--L~~L~l~~~~i~~lp~----~~~--~l~~L~~L~l~~~ 198 (492)
... .+|..+..+++ |+.|++++|... .+|..++.+.. |+.|++++|.+...+. .+. .+++|+.|++++|
T Consensus 606 ~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N 683 (876)
T 4ecn_A 606 QIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683 (876)
T ss_dssp CCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS
T ss_pred ccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC
Confidence 766 88888888888 999999987644 78877766644 7777777777753322 222 2346777777666
Q ss_pred c--CCccccC-CCCCCcEEecCCCcccccchhhhcC--------ccccccccccccccccCCCC-----Ccccceeeccc
Q 043408 199 K--ELPECLG-QLSSLRILFLDKNNFERIPESIICL--------SHLYWLRISYCERLKSLPEL-----PCDLSDIEAHC 262 (492)
Q Consensus 199 ~--~lp~~l~-~l~~L~~L~L~~n~l~~lp~~l~~l--------~~L~~L~L~~c~~l~~lp~l-----~~sL~~L~~~~ 262 (492)
. .+|..+. .+++|+.|+|++|.++.+|..+... ++|+.|+|++|+ +..+|.. .++|+.|++.+
T Consensus 684 ~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~ 762 (876)
T 4ecn_A 684 EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSY 762 (876)
T ss_dssp CCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECCS
T ss_pred cCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeCC
Confidence 5 3555443 5667777777777766666544432 267777777763 4456542 24666666665
Q ss_pred c
Q 043408 263 C 263 (492)
Q Consensus 263 C 263 (492)
+
T Consensus 763 N 763 (876)
T 4ecn_A 763 N 763 (876)
T ss_dssp S
T ss_pred C
Confidence 5
No 11
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=6e-25 Score=219.72 Aligned_cols=218 Identities=28% Similarity=0.380 Sum_probs=158.8
Q ss_pred CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccC
Q 043408 1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEH 79 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~ 79 (492)
++++|+|++++++.+|..+..+++|++|+|++|.+. .+|. ++.+++|++|+|++|... .+|..++.+++|++|++++
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence 367788888888888877777888888888887766 5554 777888888888876443 7777788888888888888
Q ss_pred CCCCcccCCcc-C---------CCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEecc
Q 043408 80 CRSLTSLSTSI-H---------LESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLS 149 (492)
Q Consensus 80 ~~~l~~lp~~~-~---------l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls 149 (492)
|..+..+|..+ . +++|++|++++|. +..+|..++++++|++|+|++|... .+|..++.+++|++|+++
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECT
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECc
Confidence 77777777654 2 7777777777753 4467777777777777777776654 456667777777777777
Q ss_pred CCCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcc-cccchhh
Q 043408 150 GCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNF-ERIPESI 228 (492)
Q Consensus 150 ~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l-~~lp~~l 228 (492)
+|...+.+|..++.+++|+.|++++|.+.. .+|..++.+++|+.|+|++|++ ..+|..+
T Consensus 238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~--------------------~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLL--------------------TLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp TCTTCCBCCCCTTCCCCCCEEECTTCTTCC--------------------BCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred CCcchhhhHHHhcCCCCCCEEECCCCCchh--------------------hcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 777777777777777777777776654331 2445567778888888888874 4788888
Q ss_pred hcCccccccccccc
Q 043408 229 ICLSHLYWLRISYC 242 (492)
Q Consensus 229 ~~l~~L~~L~L~~c 242 (492)
.++++|+.+++..+
T Consensus 298 ~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 298 AQLPANCIILVPPH 311 (328)
T ss_dssp GGSCTTCEEECCGG
T ss_pred hhccCceEEeCCHH
Confidence 88888888887763
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=8.3e-25 Score=236.17 Aligned_cols=241 Identities=20% Similarity=0.181 Sum_probs=126.0
Q ss_pred ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408 2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR 81 (492)
Q Consensus 2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~ 81 (492)
|++|+++++.++.++ .+..+++|+.|++++|.+ +.+|.+ .+++|++|++++|.....+ .++.+++|++|++++|.
T Consensus 287 L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 361 (606)
T 3vq2_A 287 VSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNA 361 (606)
T ss_dssp CSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSC
T ss_pred CCEEEecCccchhhh-hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCc
Confidence 445555555555554 455555555555555554 444544 5555555555555443333 34455555555555544
Q ss_pred CCccc---CCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccc-cccCCCCCCCEEeccCCCCCCC
Q 043408 82 SLTSL---STSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLP-SKICKLKSLERLNLSGCSNLQR 156 (492)
Q Consensus 82 ~l~~l---p~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~ 156 (492)
+... +..+ .+++|++|++++|. +..+|..+..+++|++|++++|...+..| ..+..+++|++|++++|...+.
T Consensus 362 -l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 439 (606)
T 3vq2_A 362 -LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439 (606)
T ss_dssp -EEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred -cCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc
Confidence 2222 2222 45555555555543 33445555555555555555555444444 3455555555555555555444
Q ss_pred cccccCCcccccccccccccccc--cccccccCCCCcccccCCCcC---CccccCCCCCCcEEecCCCccccc-chhhhc
Q 043408 157 LPNELGNLEALKELKAEGIAIRE--VPSSIVCLKNLGRLSFESFKE---LPECLGQLSSLRILFLDKNNFERI-PESIIC 230 (492)
Q Consensus 157 lp~~l~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~---lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~ 230 (492)
.|..++.+++|+.|++++|.+.. +|..+..+++|+.|++++|.- .|..++.+++|+.|+|++|+++.+ |..+..
T Consensus 440 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 519 (606)
T 3vq2_A 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519 (606)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTT
T ss_pred chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccC
Confidence 55555555555555555555553 455555555555555555541 334455555555555555555533 445555
Q ss_pred CccccccccccccccccCCC
Q 043408 231 LSHLYWLRISYCERLKSLPE 250 (492)
Q Consensus 231 l~~L~~L~L~~c~~l~~lp~ 250 (492)
+++|+.|++++|+ ++.+|.
T Consensus 520 l~~L~~L~l~~N~-l~~~p~ 538 (606)
T 3vq2_A 520 LYSLSTLDCSFNR-IETSKG 538 (606)
T ss_dssp CTTCCEEECTTSC-CCCEES
T ss_pred CCcCCEEECCCCc-CcccCH
Confidence 5555555555543 344443
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=1.5e-24 Score=234.10 Aligned_cols=262 Identities=19% Similarity=0.136 Sum_probs=212.6
Q ss_pred CceEEEccCCCcccccc-cccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408 1 NLVSLEMPHSSIKQLWK-GVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE 78 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~ 78 (492)
+|++|++++++++.++. .+..+++|++|++++|.+. .+| .+..+++|++|++++|......|..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 37899999999998874 4888999999999999866 455 58899999999999987766667788999999999999
Q ss_pred CCCCCcccCCc-c-CCCCCCEEEeeCCCCCccc--CccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCC
Q 043408 79 HCRSLTSLSTS-I-HLESLKTLILSGCSNLMKL--PSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNL 154 (492)
Q Consensus 79 ~~~~l~~lp~~-~-~l~~L~~L~L~~c~~l~~l--p~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l 154 (492)
+|.....++.. + .+++|++|++++|...... +..+..+++|++|++++|...+..|..+..+++|++|++++|...
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 98765566654 3 8999999999997655433 667899999999999999887777888899999999999998766
Q ss_pred CCccc-ccCCccccccccccccccccc-ccccccCCCCcccccCCCcC------CccccCCCCCCcEEecCCCccccc-c
Q 043408 155 QRLPN-ELGNLEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESFKE------LPECLGQLSSLRILFLDKNNFERI-P 225 (492)
Q Consensus 155 ~~lp~-~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~------lp~~l~~l~~L~~L~L~~n~l~~l-p 225 (492)
+..+. .++.+++|+.|++++|.+... |..+..+++|+.|++++|.- .+..+..+++|+.|++++|.++.+ |
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 65554 488899999999999998854 56678899999999998862 235688899999999999998865 5
Q ss_pred hhhhcCccccccccccccccccCCCCC---cccceeeccccc
Q 043408 226 ESIICLSHLYWLRISYCERLKSLPELP---CDLSDIEAHCCS 264 (492)
Q Consensus 226 ~~l~~l~~L~~L~L~~c~~l~~lp~l~---~sL~~L~~~~C~ 264 (492)
..+..+++|+.|++++|+.....|+.. .+| .|++.++.
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 788899999999999987655555443 445 67777663
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=3.6e-24 Score=226.95 Aligned_cols=254 Identities=19% Similarity=0.132 Sum_probs=164.1
Q ss_pred eEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408 3 VSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR 81 (492)
Q Consensus 3 ~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~ 81 (492)
++|++++++++.+|..+. ++|++|+|++|.+....| .+.++++|++|+|++|......|..++.+++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 467888888888876665 788888888877655444 37778888888888876555556777788888888888775
Q ss_pred CCcccCCccCCCCCCEEEeeCCCCCc-ccCccccCCCCCcEEEcccCCCCCccccccCCCCCC--CEEeccCCCC-----
Q 043408 82 SLTSLSTSIHLESLKTLILSGCSNLM-KLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSL--ERLNLSGCSN----- 153 (492)
Q Consensus 82 ~l~~lp~~~~l~~L~~L~L~~c~~l~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L--~~L~Ls~c~~----- 153 (492)
++.+|.. .+++|++|++++|.... .+|..++++++|++|++++|...+ ..+..+++| ++|++++|..
T Consensus 81 -l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 81 -LVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp -CCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred -eeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccc
Confidence 5567766 77888888888865544 356777778888777777776543 123333333 4444444433
Q ss_pred --------------------------------------------------------------------------------
Q 043408 154 -------------------------------------------------------------------------------- 153 (492)
Q Consensus 154 -------------------------------------------------------------------------------- 153 (492)
T Consensus 156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 235 (520)
T 2z7x_B 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235 (520)
T ss_dssp CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHH
T ss_pred ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHH
Confidence
Q ss_pred ------------------------CCCccccc-----CCccccccccccccccccccc-c--------------------
Q 043408 154 ------------------------LQRLPNEL-----GNLEALKELKAEGIAIREVPS-S-------------------- 183 (492)
Q Consensus 154 ------------------------l~~lp~~l-----~~l~~L~~L~l~~~~i~~lp~-~-------------------- 183 (492)
.+.+|..+ +.+++|+.+++++|.+ .+|. .
T Consensus 236 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l 314 (520)
T 2z7x_B 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRM 314 (520)
T ss_dssp HHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcc
Confidence 22334333 3444444444433333 2220 0
Q ss_pred -----cccCCCCcccccCCCc---CCccccCCCCCCcEEecCCCcccc---cchhhhcCccccccccccccccccCCC--
Q 043408 184 -----IVCLKNLGRLSFESFK---ELPECLGQLSSLRILFLDKNNFER---IPESIICLSHLYWLRISYCERLKSLPE-- 250 (492)
Q Consensus 184 -----~~~l~~L~~L~l~~~~---~lp~~l~~l~~L~~L~L~~n~l~~---lp~~l~~l~~L~~L~L~~c~~l~~lp~-- 250 (492)
...+++|+.|+++++. .+|..++.+++|+.|++++|.++. +|..+..+++|+.|++++|.....+|.
T Consensus 315 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394 (520)
T ss_dssp CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred ccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch
Confidence 0456677777777765 256677778888888888888773 455677788888888888765444653
Q ss_pred --CCcccceeeccccc
Q 043408 251 --LPCDLSDIEAHCCS 264 (492)
Q Consensus 251 --l~~sL~~L~~~~C~ 264 (492)
..++|+.|++.+|.
T Consensus 395 ~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNI 410 (520)
T ss_dssp CCCCTTCCEEECCSSC
T ss_pred hccCccCCEEECcCCC
Confidence 24677777777764
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=4.7e-24 Score=227.45 Aligned_cols=267 Identities=20% Similarity=0.214 Sum_probs=197.9
Q ss_pred CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408 1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE 78 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~ 78 (492)
+|++|+|++|+++.++ ..+..+++|++|+|++|.+....|+ ++++++|++|+|++|......+..++.+++|++|+++
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 4788999999998774 6788899999999999887665554 8889999999999876555555558889999999999
Q ss_pred CCCCCc-ccCCcc-CCCCCCEEEeeCCCCCcccC-ccccCCCCCcEEEcccCCCCCccccccCC----------------
Q 043408 79 HCRSLT-SLSTSI-HLESLKTLILSGCSNLMKLP-SSIERLSSLILLNLRNCSRLEGLPSKICK---------------- 139 (492)
Q Consensus 79 ~~~~l~-~lp~~~-~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i~~---------------- 139 (492)
+|.... ..|..+ ++++|++|++++|.....+| ..+.++++|++|++++|...+..|..++.
T Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 186 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186 (549)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT
T ss_pred CCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc
Confidence 886322 234434 78888888888877666665 45777888888888877766555554443
Q ss_pred --------CCCCCEEeccCCCCCC--------------------------------------------------------
Q 043408 140 --------LKSLERLNLSGCSNLQ-------------------------------------------------------- 155 (492)
Q Consensus 140 --------l~~L~~L~Ls~c~~l~-------------------------------------------------------- 155 (492)
+++|++|++++|...+
T Consensus 187 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~ 266 (549)
T 2z81_A 187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266 (549)
T ss_dssp HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECC
T ss_pred cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccc
Confidence 3455555555543222
Q ss_pred ---------------------------------------------------------Cccccc-CCcccccccccccccc
Q 043408 156 ---------------------------------------------------------RLPNEL-GNLEALKELKAEGIAI 177 (492)
Q Consensus 156 ---------------------------------------------------------~lp~~l-~~l~~L~~L~l~~~~i 177 (492)
.+|..+ +.+++|+.|++++|.+
T Consensus 267 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l 346 (549)
T 2z81_A 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346 (549)
T ss_dssp SCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCC
T ss_pred ccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCcc
Confidence 122222 3467888899999988
Q ss_pred cc-cc---cccccCCCCcccccCCCcC--Cc---cccCCCCCCcEEecCCCcccccchhhhcCccccccccccccccccC
Q 043408 178 RE-VP---SSIVCLKNLGRLSFESFKE--LP---ECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSL 248 (492)
Q Consensus 178 ~~-lp---~~~~~l~~L~~L~l~~~~~--lp---~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l 248 (492)
.. +| ..++.+++|+.|++++|.- ++ ..++.+++|+.|++++|+++.+|..+..+++|++|++++|. ++.+
T Consensus 347 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l 425 (549)
T 2z81_A 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG-IRVV 425 (549)
T ss_dssp CHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSC-CSCC
T ss_pred ccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCC-cccc
Confidence 74 33 3367889999999999863 33 45889999999999999999999999999999999999976 6666
Q ss_pred CC-CCcccceeecccccccccc
Q 043408 249 PE-LPCDLSDIEAHCCSSLEAL 269 (492)
Q Consensus 249 p~-l~~sL~~L~~~~C~~L~~l 269 (492)
|. .+++|+.|++.+| .++.+
T Consensus 426 ~~~~~~~L~~L~Ls~N-~l~~~ 446 (549)
T 2z81_A 426 KTCIPQTLEVLDVSNN-NLDSF 446 (549)
T ss_dssp CTTSCTTCSEEECCSS-CCSCC
T ss_pred cchhcCCceEEECCCC-Chhhh
Confidence 65 4578999999887 34433
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.3e-24 Score=232.66 Aligned_cols=255 Identities=17% Similarity=0.109 Sum_probs=170.2
Q ss_pred CceEEEccCCCccccccc-ccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408 1 NLVSLEMPHSSIKQLWKG-VQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE 78 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~ 78 (492)
+++.|+++++.+..+|.. +..+++|++|+|++|.+....| .++.+++|++|+|++|......|..++.+++|++|+|+
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 467788888888888754 5668888888888887655554 47888888888888876555445556788888888888
Q ss_pred CCCCCcccCCcc--CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCC--------------
Q 043408 79 HCRSLTSLSTSI--HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKS-------------- 142 (492)
Q Consensus 79 ~~~~l~~lp~~~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~-------------- 142 (492)
+|. +..+|..+ ++++|++|++++|......|..++++++|++|++++|...+.- +..+++
T Consensus 132 ~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 132 RND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE
T ss_pred CCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc
Confidence 875 66666543 7888888888887655555566888888888888887655432 222333
Q ss_pred -----CCEEeccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCcC---CccccCCCCCCcEE
Q 043408 143 -----LERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKE---LPECLGQLSSLRIL 214 (492)
Q Consensus 143 -----L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~---lp~~l~~l~~L~~L 214 (492)
|+.|++++|.. ..++..+ .++|+.|++++|.+... ..+..+++|+.|++++|.- .|..++.+++|+.|
T Consensus 208 ~~~~~L~~L~ls~n~l-~~~~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 283 (597)
T 3oja_B 208 AIPIAVEELDASHNSI-NVVRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283 (597)
T ss_dssp ECCTTCSEEECCSSCC-CEEECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred cCCchhheeeccCCcc-ccccccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence 44444444321 2222211 24566777777766654 4566777777777777652 45667777777777
Q ss_pred ecCCCcccccchhhhcCccccccccccccccccCCCC---Ccccceeeccccc
Q 043408 215 FLDKNNFERIPESIICLSHLYWLRISYCERLKSLPEL---PCDLSDIEAHCCS 264 (492)
Q Consensus 215 ~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~~sL~~L~~~~C~ 264 (492)
+|++|.++.+|..+..+++|+.|+|++|. +..+|.. .++|+.|++.+|.
T Consensus 284 ~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 284 YISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp ECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred ECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC
Confidence 77777777777666667777777777764 4455542 3567777776654
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=3.3e-24 Score=238.90 Aligned_cols=212 Identities=15% Similarity=0.113 Sum_probs=92.3
Q ss_pred CCcEEEccCCCCCCCCCC---CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCcc-CCCC-CCEE
Q 043408 24 NLKHLNLSHSEHLTKIPD---LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI-HLES-LKTL 98 (492)
Q Consensus 24 ~L~~L~Ls~~~~l~~~p~---l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~-~l~~-L~~L 98 (492)
+|++|+|++|.+. .+|. ++++++|++|+|++|... .+| .++.+++|+.|+|++|. +..+|..+ ++++ |++|
T Consensus 549 ~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L 624 (876)
T 4ecn_A 549 KIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGL 624 (876)
T ss_dssp TCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEE
T ss_pred CccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEE
Confidence 5555555555444 3333 455555555555554322 444 44555555555555544 22444333 4444 5555
Q ss_pred EeeCCCCCcccCccccCCCC--CcEEEcccCCCCCcccc---ccC--CCCCCCEEeccCCCCCCCccccc-CCccccccc
Q 043408 99 ILSGCSNLMKLPSSIERLSS--LILLNLRNCSRLEGLPS---KIC--KLKSLERLNLSGCSNLQRLPNEL-GNLEALKEL 170 (492)
Q Consensus 99 ~L~~c~~l~~lp~~i~~l~~--L~~L~L~~~~~l~~lp~---~i~--~l~~L~~L~Ls~c~~l~~lp~~l-~~l~~L~~L 170 (492)
++++|. +..+|..+..++. |+.|+|++|...+.+|. .+. .+.+|+.|++++|... .+|..+ ..+++|+.|
T Consensus 625 ~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L 702 (876)
T 4ecn_A 625 GFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTI 702 (876)
T ss_dssp ECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEE
T ss_pred ECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEE
Confidence 555533 2244444443332 55555555444433221 111 1224444444443222 333332 234444444
Q ss_pred ccccccccccccccccC--------CCCcccccCCCc--CCccccC--CCCCCcEEecCCCcccccchhhhcCccccccc
Q 043408 171 KAEGIAIREVPSSIVCL--------KNLGRLSFESFK--ELPECLG--QLSSLRILFLDKNNFERIPESIICLSHLYWLR 238 (492)
Q Consensus 171 ~l~~~~i~~lp~~~~~l--------~~L~~L~l~~~~--~lp~~l~--~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 238 (492)
++++|.+..+|..+... ++|+.|++++|. .+|..+. .+++|+.|+|++|.++.+|..+..+++|+.|+
T Consensus 703 ~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~ 782 (876)
T 4ecn_A 703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFG 782 (876)
T ss_dssp ECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEE
T ss_pred ECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEE
Confidence 44444444444433221 144444444433 2444443 44444444444444444444444444444444
Q ss_pred ccc
Q 043408 239 ISY 241 (492)
Q Consensus 239 L~~ 241 (492)
|++
T Consensus 783 Ls~ 785 (876)
T 4ecn_A 783 IRH 785 (876)
T ss_dssp CCC
T ss_pred CCC
Confidence 433
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=3e-24 Score=223.54 Aligned_cols=263 Identities=19% Similarity=0.197 Sum_probs=209.7
Q ss_pred CceEEEccCCCcc-ccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCcccccc--ccCCcCCcEE
Q 043408 1 NLVSLEMPHSSIK-QLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSS--IQYLNKLIVL 75 (492)
Q Consensus 1 nL~~L~L~~s~i~-~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~s--i~~L~~L~~L 75 (492)
+|++|+|++|.+. .++ ..+..+++|++|+|++|.+....|. ++++++|++|+|++|.....++.. ++.+++|++|
T Consensus 55 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 134 (455)
T 3v47_A 55 DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEML 134 (455)
T ss_dssp TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEE
T ss_pred cccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEE
Confidence 5889999999886 554 6788899999999999987766564 899999999999998766555554 8889999999
Q ss_pred eccCCCCCcccCCc-c-CCCCCCEEEeeCCCCCcccCcccc----------------------------------CCCCC
Q 043408 76 NLEHCRSLTSLSTS-I-HLESLKTLILSGCSNLMKLPSSIE----------------------------------RLSSL 119 (492)
Q Consensus 76 ~L~~~~~l~~lp~~-~-~l~~L~~L~L~~c~~l~~lp~~i~----------------------------------~l~~L 119 (492)
++++|......|.. + ++++|++|++++|......+..+. .+++|
T Consensus 135 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L 214 (455)
T 3v47_A 135 VLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSI 214 (455)
T ss_dssp ECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEE
T ss_pred ECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccccee
Confidence 99998744444553 3 889999999999765544444333 33678
Q ss_pred cEEEcccCCCCCccccccC---------------------------------------CCCCCCEEeccCCCCCCCcccc
Q 043408 120 ILLNLRNCSRLEGLPSKIC---------------------------------------KLKSLERLNLSGCSNLQRLPNE 160 (492)
Q Consensus 120 ~~L~L~~~~~l~~lp~~i~---------------------------------------~l~~L~~L~Ls~c~~l~~lp~~ 160 (492)
++|++++|...+..|..+. ..++|++|++++|...+..|..
T Consensus 215 ~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 294 (455)
T 3v47_A 215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV 294 (455)
T ss_dssp EEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT
T ss_pred eeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhh
Confidence 8999998876654443321 1257999999998877778888
Q ss_pred cCCccccccccccccccccc-ccccccCCCCcccccCCCc--C-CccccCCCCCCcEEecCCCccccc-chhhhcCcccc
Q 043408 161 LGNLEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESFK--E-LPECLGQLSSLRILFLDKNNFERI-PESIICLSHLY 235 (492)
Q Consensus 161 l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~--~-lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~ 235 (492)
++.+++|+.|++++|.+..+ |..+..+++|+.|++++|. . .+..++.+++|+.|+|++|.++.+ |..+..+++|+
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence 99999999999999999977 5578899999999999986 2 467789999999999999999866 67899999999
Q ss_pred ccccccccccccCCC----CCcccceeeccccc
Q 043408 236 WLRISYCERLKSLPE----LPCDLSDIEAHCCS 264 (492)
Q Consensus 236 ~L~L~~c~~l~~lp~----l~~sL~~L~~~~C~ 264 (492)
+|++++|+ ++.+|. ..++|+.|++.+++
T Consensus 375 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 375 ELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCc-cccCCHhHhccCCcccEEEccCCC
Confidence 99999975 566664 24688999988764
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=4.2e-24 Score=226.45 Aligned_cols=130 Identities=17% Similarity=0.192 Sum_probs=97.2
Q ss_pred CCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccc---cccccccCCCCcccccCCCc--C-Cccc-cCCCCC
Q 043408 138 CKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIRE---VPSSIVCLKNLGRLSFESFK--E-LPEC-LGQLSS 210 (492)
Q Consensus 138 ~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~---lp~~~~~l~~L~~L~l~~~~--~-lp~~-l~~l~~ 210 (492)
..+++|++|++++|...+.+|..++.+++|+.|++++|.+.. +|..+..+++|+.|++++|. . +|.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 567888888888887777788888888899999999888874 45667888888888888876 2 5553 677788
Q ss_pred CcEEecCCCccc-ccchhhhcCccccccccccccccccCCCC---Ccccceeecccccccccccc
Q 043408 211 LRILFLDKNNFE-RIPESIICLSHLYWLRISYCERLKSLPEL---PCDLSDIEAHCCSSLEALSG 271 (492)
Q Consensus 211 L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~~sL~~L~~~~C~~L~~l~~ 271 (492)
|+.|++++|.++ .+|..+. ++|+.|++++|. ++.+|.. .++|+.|++.++ .++.++.
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~ 461 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASN-QLKSVPD 461 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-CCCCCCT
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCC-cCCccCH
Confidence 888888888875 4554443 678888888874 5577753 467788888776 4555554
No 20
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=1.3e-23 Score=209.68 Aligned_cols=241 Identities=18% Similarity=0.220 Sum_probs=199.8
Q ss_pred ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408 2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC 80 (492)
Q Consensus 2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~ 80 (492)
|+.+++++++++.+|..+. ++|++|+|++|.+....+ .+.++++|++|+|++|......|..++.+++|++|++++|
T Consensus 33 l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp TTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 6788999999999987654 689999999998766555 4899999999999998766666888999999999999997
Q ss_pred CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCC--ccccccCCCCCCCEEeccCCCCCCCcc
Q 043408 81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLE--GLPSKICKLKSLERLNLSGCSNLQRLP 158 (492)
Q Consensus 81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~Ls~c~~l~~lp 158 (492)
. ++.+|..+. ++|++|++++|......+..+.++++|++|++++|.... ..+..+..+++|++|++++|. +..+|
T Consensus 111 ~-l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~ 187 (330)
T 1xku_A 111 Q-LKELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIP 187 (330)
T ss_dssp C-CSBCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCC
T ss_pred c-CCccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCC
Confidence 6 677776554 899999999976554444568999999999999988753 567778899999999999964 55677
Q ss_pred cccCCccccccccccccccccc-ccccccCCCCcccccCCCc--CC-ccccCCCCCCcEEecCCCcccccchhhhcCccc
Q 043408 159 NELGNLEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESFK--EL-PECLGQLSSLRILFLDKNNFERIPESIICLSHL 234 (492)
Q Consensus 159 ~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~--~l-p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L 234 (492)
..+. ++|+.|++++|.+..+ |..+..+++|+.|+++++. .+ +..+..+++|+.|+|++|.++.+|..+..+++|
T Consensus 188 ~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L 265 (330)
T 1xku_A 188 QGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 265 (330)
T ss_dssp SSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSC
T ss_pred cccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCc
Confidence 6554 7899999999999876 5678899999999999886 23 447888999999999999999999999999999
Q ss_pred cccccccccccccCCC
Q 043408 235 YWLRISYCERLKSLPE 250 (492)
Q Consensus 235 ~~L~L~~c~~l~~lp~ 250 (492)
+.|++++|+ ++.+|.
T Consensus 266 ~~L~l~~N~-i~~~~~ 280 (330)
T 1xku_A 266 QVVYLHNNN-ISAIGS 280 (330)
T ss_dssp CEEECCSSC-CCCCCT
T ss_pred CEEECCCCc-CCccCh
Confidence 999999975 556553
No 21
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=1.5e-23 Score=209.62 Aligned_cols=254 Identities=18% Similarity=0.191 Sum_probs=204.7
Q ss_pred ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408 2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC 80 (492)
Q Consensus 2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~ 80 (492)
|+.+++++++++.+|..+. ++|++|+|++|.+....+ .+.++++|++|+|++|......|..++.+++|++|++++|
T Consensus 35 l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred CCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 6789999999999987664 689999999998765555 4899999999999998766656788999999999999997
Q ss_pred CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCC--ccccccCCCCCCCEEeccCCCCCCCcc
Q 043408 81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLE--GLPSKICKLKSLERLNLSGCSNLQRLP 158 (492)
Q Consensus 81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~Ls~c~~l~~lp 158 (492)
. +..+|..+. ++|++|++++|......+..+.++++|++|++++|.... ..|..+..+ +|++|++++|. +..+|
T Consensus 113 ~-l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~ 188 (332)
T 2ft3_A 113 H-LVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIP 188 (332)
T ss_dssp C-CCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCC
T ss_pred c-CCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccC
Confidence 6 667776555 899999999965443333458999999999999988743 566777777 89999999975 44577
Q ss_pred cccCCcccccccccccccccccc-cccccCCCCcccccCCCc--CC-ccccCCCCCCcEEecCCCcccccchhhhcCccc
Q 043408 159 NELGNLEALKELKAEGIAIREVP-SSIVCLKNLGRLSFESFK--EL-PECLGQLSSLRILFLDKNNFERIPESIICLSHL 234 (492)
Q Consensus 159 ~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~--~l-p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L 234 (492)
..+. ++|+.|++++|.+..++ ..+..+++|+.|+++++. .+ +..+..+++|+.|++++|.++.+|..+..+++|
T Consensus 189 ~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L 266 (332)
T 2ft3_A 189 KDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLL 266 (332)
T ss_dssp SSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTC
T ss_pred cccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccC
Confidence 6654 78999999999999776 578899999999999886 34 347889999999999999999999999999999
Q ss_pred cccccccccccccCCCC----------Ccccceeeccccc
Q 043408 235 YWLRISYCERLKSLPEL----------PCDLSDIEAHCCS 264 (492)
Q Consensus 235 ~~L~L~~c~~l~~lp~l----------~~sL~~L~~~~C~ 264 (492)
+.|++++|+ ++.++.. ..+++.|++.+++
T Consensus 267 ~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 267 QVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp CEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred CEEECCCCC-CCccChhHccccccccccccccceEeecCc
Confidence 999999975 5565531 2346667666654
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=7.4e-24 Score=222.26 Aligned_cols=257 Identities=19% Similarity=0.186 Sum_probs=202.7
Q ss_pred eEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408 3 VSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR 81 (492)
Q Consensus 3 ~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~ 81 (492)
+.++.++.+++.+|.++. ++|+.|+|++|.+....+ .|.++++|++|+|++|......|..+..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 357788899999997764 689999999998766555 49999999999999987666668889999999999999986
Q ss_pred CCcccCCcc--CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCccc
Q 043408 82 SLTSLSTSI--HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPN 159 (492)
Q Consensus 82 ~l~~lp~~~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~ 159 (492)
+..+|... ++++|++|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|......+.
T Consensus 92 -l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 92 -LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp -CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred -CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 77777643 899999999999876666678899999999999999988877788899999999999999865554445
Q ss_pred ccCCccccccccccccccccccc-ccccCCCCcccccCCCcC---CccccCCCCCCcEEecCCCcccccc-hhhhcCccc
Q 043408 160 ELGNLEALKELKAEGIAIREVPS-SIVCLKNLGRLSFESFKE---LPECLGQLSSLRILFLDKNNFERIP-ESIICLSHL 234 (492)
Q Consensus 160 ~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~---lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L 234 (492)
.+..+++|+.|++++|.+..++. .+..+++|+.|+++++.. ++.......+|+.|+|++|.++.+| ..+..+++|
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 68999999999999999987665 578888999999888652 4444445557777777777777666 356677777
Q ss_pred cccccccccccccCCC----CCcccceeecccc
Q 043408 235 YWLRISYCERLKSLPE----LPCDLSDIEAHCC 263 (492)
Q Consensus 235 ~~L~L~~c~~l~~lp~----l~~sL~~L~~~~C 263 (492)
+.|+|++|. +..++. ..++|+.|++.++
T Consensus 251 ~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 251 RFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp CEEECCSSC-CCEECTTSCTTCTTCCEEECCSS
T ss_pred CeeECCCCc-CCccChhhccccccCCEEECCCC
Confidence 777777764 333332 1345666666554
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.5e-23 Score=210.50 Aligned_cols=250 Identities=22% Similarity=0.292 Sum_probs=197.7
Q ss_pred CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408 1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC 80 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~ 80 (492)
+|++|++++++++.++ ++..+++|++|++++|.+. .++.+..+++|++|++++|. +..++ .+..+++|++|++++|
T Consensus 45 ~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~-~~~~~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L~l~~n 120 (347)
T 4fmz_A 45 SITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQIT-DISPLSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELYLNED 120 (347)
T ss_dssp TCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEECTTS
T ss_pred cccEEEEeCCccccch-hhhhcCCccEEEccCCccc-cchhhhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEEECcCC
Confidence 4789999999999886 4788999999999998754 45558999999999999974 44554 6888999999999987
Q ss_pred CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc
Q 043408 81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE 160 (492)
Q Consensus 81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~ 160 (492)
. +..++....+++|++|++++|.....++. +..+++|++|++++|......+ +..+++|++|++++|.. ..++.
T Consensus 121 ~-i~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l-~~~~~- 194 (347)
T 4fmz_A 121 N-ISDISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI-EDISP- 194 (347)
T ss_dssp C-CCCCGGGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC-CCCGG-
T ss_pred c-ccCchhhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc-ccccc-
Confidence 6 66666655899999999999876665544 8889999999999987654433 77889999999998754 44544
Q ss_pred cCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhhcCccccccc
Q 043408 161 LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLR 238 (492)
Q Consensus 161 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 238 (492)
+..+++|+.|++++|.+..++. +..+++|+.|++++|. .++. +..+++|+.|++++|.++.++ .+..+++|+.|+
T Consensus 195 ~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~ 271 (347)
T 4fmz_A 195 LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLN 271 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEE
T ss_pred ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEE
Confidence 7778888889998888887766 7788888888888876 3444 788888888888888888774 577888888888
Q ss_pred cccccccccCCCC--Ccccceeeccccc
Q 043408 239 ISYCERLKSLPEL--PCDLSDIEAHCCS 264 (492)
Q Consensus 239 L~~c~~l~~lp~l--~~sL~~L~~~~C~ 264 (492)
+++| .+..++.+ .++|+.|++.+|.
T Consensus 272 l~~n-~l~~~~~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 272 VGSN-QISDISVLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp CCSS-CCCCCGGGGGCTTCSEEECCSSC
T ss_pred ccCC-ccCCChhhcCCCCCCEEECcCCc
Confidence 8887 45555543 4678888888874
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=1.3e-23 Score=226.87 Aligned_cols=240 Identities=20% Similarity=0.199 Sum_probs=164.1
Q ss_pred CCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCcc-CCCCCCEEEee
Q 043408 24 NLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI-HLESLKTLILS 101 (492)
Q Consensus 24 ~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~ 101 (492)
+|+.|++++|.+....+. ++.+++|++|++++| .+..+|..++.+++|++|++++|......|..+ .+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 677788877766554444 777778888888775 345777777777888888887776333333333 67778888887
Q ss_pred CCCCCcccCcc-ccCCCCCcEEEcccCCCCCcc--ccccCCCCCCCEEeccCCCCCCCcccccCCccccccccccccccc
Q 043408 102 GCSNLMKLPSS-IERLSSLILLNLRNCSRLEGL--PSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIR 178 (492)
Q Consensus 102 ~c~~l~~lp~~-i~~l~~L~~L~L~~~~~l~~l--p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~ 178 (492)
+|.....+|.. +..+++|++|++++|...+.. +..+..+++|++|++++|...+..|..++.+++|+.|++++|.+.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 77665555543 777788888888777665544 566777778888888777665556667777777888888877776
Q ss_pred ccc--cccccCCCCcccccCCCc---CCccccCCCCCCcEEecCCCcccc--cc--hhhhcCccccccccccccccccCC
Q 043408 179 EVP--SSIVCLKNLGRLSFESFK---ELPECLGQLSSLRILFLDKNNFER--IP--ESIICLSHLYWLRISYCERLKSLP 249 (492)
Q Consensus 179 ~lp--~~~~~l~~L~~L~l~~~~---~lp~~l~~l~~L~~L~L~~n~l~~--lp--~~l~~l~~L~~L~L~~c~~l~~lp 249 (492)
..+ ..+..+++|+.|++++|. ..|..++.+++|+.|++++|.++. ++ ..+..+++|+.|++++|......|
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 442 336777778888877765 245567777788888888887763 22 457777788888888775443334
Q ss_pred CC---Ccccceeeccccc
Q 043408 250 EL---PCDLSDIEAHCCS 264 (492)
Q Consensus 250 ~l---~~sL~~L~~~~C~ 264 (492)
.. .++|+.|++.++.
T Consensus 494 ~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp TTTTTCTTCCEEECCSSC
T ss_pred hhhccccCCCEEECCCCc
Confidence 32 3567777777663
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=2.6e-23 Score=224.38 Aligned_cols=130 Identities=22% Similarity=0.201 Sum_probs=94.1
Q ss_pred CceEEEccCCCcccccc-cccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408 1 NLVSLEMPHSSIKQLWK-GVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE 78 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~ 78 (492)
+|++|+|++|+++.++. .+..+++|++|+|++|.+....|+ |.++++|++|+|++|......|..++.+++|++|+++
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 112 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence 46788888888887764 677788888888888876655554 7788888888888876555557778888888888888
Q ss_pred CCCCCcccC-Ccc-CCCCCCEEEeeCCCCCc-ccCccccCCCCCcEEEcccCCCCC
Q 043408 79 HCRSLTSLS-TSI-HLESLKTLILSGCSNLM-KLPSSIERLSSLILLNLRNCSRLE 131 (492)
Q Consensus 79 ~~~~l~~lp-~~~-~l~~L~~L~L~~c~~l~-~lp~~i~~l~~L~~L~L~~~~~l~ 131 (492)
+|. +..++ ..+ ++++|++|++++|.... .+|..++++++|++|++++|...+
T Consensus 113 ~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 113 ETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp TSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred CCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 876 44444 333 77788888888765443 467777788888888777776543
No 26
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=5.4e-24 Score=212.79 Aligned_cols=211 Identities=26% Similarity=0.342 Sum_probs=138.7
Q ss_pred CCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCccCCCCCCEEEeeC
Q 043408 23 VNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSG 102 (492)
Q Consensus 23 ~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~ 102 (492)
.+++.|+|++|.+....+.+..+++|++|+|++|... .+|..++.+++|++|++++|. +.
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~-l~------------------ 140 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-LR------------------ 140 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC-CC------------------
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc-cc------------------
Confidence 4555666665554322223555555555555554332 455555555555555555543 23
Q ss_pred CCCCcccCccccCCCCCcEEEcccCCCCCccccccC---------CCCCCCEEeccCCCCCCCcccccCCcccccccccc
Q 043408 103 CSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKIC---------KLKSLERLNLSGCSNLQRLPNELGNLEALKELKAE 173 (492)
Q Consensus 103 c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~---------~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~ 173 (492)
.+|..++++++|++|++++|...+.+|..++ .+++|++|++++|. +..+|..++.+++|+.|+++
T Consensus 141 -----~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~ 214 (328)
T 4fcg_A 141 -----ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIR 214 (328)
T ss_dssp -----CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEE
T ss_pred -----cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEcc
Confidence 4444455555555555555555555554443 36677777777653 33666667777777777777
Q ss_pred cccccccccccccCCCCcccccCCCc---CCccccCCCCCCcEEecCCCcc-cccchhhhcCccccccccccccccccCC
Q 043408 174 GIAIREVPSSIVCLKNLGRLSFESFK---ELPECLGQLSSLRILFLDKNNF-ERIPESIICLSHLYWLRISYCERLKSLP 249 (492)
Q Consensus 174 ~~~i~~lp~~~~~l~~L~~L~l~~~~---~lp~~l~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~c~~l~~lp 249 (492)
+|.+..+|..+..+++|+.|++++|. .+|..++.+++|+.|+|++|++ ..+|..+..+++|+.|+|++|+.++.+|
T Consensus 215 ~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 215 NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp SSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred CCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 77777777777777777777777765 4677889999999999999985 5899999999999999999999999999
Q ss_pred CCCcccceee
Q 043408 250 ELPCDLSDIE 259 (492)
Q Consensus 250 ~l~~sL~~L~ 259 (492)
+....+..+.
T Consensus 295 ~~l~~L~~L~ 304 (328)
T 4fcg_A 295 SLIAQLPANC 304 (328)
T ss_dssp GGGGGSCTTC
T ss_pred HHHhhccCce
Confidence 8765554433
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=1.1e-23 Score=225.64 Aligned_cols=255 Identities=16% Similarity=0.112 Sum_probs=171.6
Q ss_pred eEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408 3 VSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR 81 (492)
Q Consensus 3 ~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~ 81 (492)
+++++++++++.+|..+. ++|++|+|++|.+....+ .+.++++|++|+|++|......|..++.+++|++|++++|.
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence 467788888887776554 678888888877655444 47778888888888775554456667778888888888766
Q ss_pred CCcccCCccCCCCCCEEEeeCCCCCc-ccCccccCCCCCcEEEcccCCCCCccccccCCCCCC--CEEeccCCCC--CCC
Q 043408 82 SLTSLSTSIHLESLKTLILSGCSNLM-KLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSL--ERLNLSGCSN--LQR 156 (492)
Q Consensus 82 ~l~~lp~~~~l~~L~~L~L~~c~~l~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L--~~L~Ls~c~~--l~~ 156 (492)
++.+|.. .+++|++|++++|.... .+|..++++++|++|++++|..... .+..+++| ++|++++|.. .+.
T Consensus 112 -l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~ 186 (562)
T 3a79_B 112 -LQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGG 186 (562)
T ss_dssp -CCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSS
T ss_pred -CCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccccc
Confidence 6677766 77888888888765333 2346777888888888887765442 22333333 6666666544 222
Q ss_pred cccccCCcc-----------------------------------------------------------------------
Q 043408 157 LPNELGNLE----------------------------------------------------------------------- 165 (492)
Q Consensus 157 lp~~l~~l~----------------------------------------------------------------------- 165 (492)
.|..+..+.
T Consensus 187 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~ 266 (562)
T 3a79_B 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266 (562)
T ss_dssp SCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHH
T ss_pred CcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHH
Confidence 222222111
Q ss_pred ----------ccccccccccccc-cccccc--------------------------------------------------
Q 043408 166 ----------ALKELKAEGIAIR-EVPSSI-------------------------------------------------- 184 (492)
Q Consensus 166 ----------~L~~L~l~~~~i~-~lp~~~-------------------------------------------------- 184 (492)
+|+.|++++|.+. .+|..+
T Consensus 267 ~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~ 346 (562)
T 3a79_B 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346 (562)
T ss_dssp HHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred HHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccc
Confidence 4445555555444 444332
Q ss_pred ---ccCCCCcccccCCCc---CCccccCCCCCCcEEecCCCcccccc---hhhhcCccccccccccccccccCCCC----
Q 043408 185 ---VCLKNLGRLSFESFK---ELPECLGQLSSLRILFLDKNNFERIP---ESIICLSHLYWLRISYCERLKSLPEL---- 251 (492)
Q Consensus 185 ---~~l~~L~~L~l~~~~---~lp~~l~~l~~L~~L~L~~n~l~~lp---~~l~~l~~L~~L~L~~c~~l~~lp~l---- 251 (492)
..+++|+.|+++++. .+|..++.+++|+.|++++|.++.++ ..+..+++|+.|++++|.....+|..
T Consensus 347 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 426 (562)
T 3a79_B 347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW 426 (562)
T ss_dssp CCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC
T ss_pred cCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC
Confidence 566788888888875 36778888999999999999888544 56788899999999998755546642
Q ss_pred Ccccceeeccccc
Q 043408 252 PCDLSDIEAHCCS 264 (492)
Q Consensus 252 ~~sL~~L~~~~C~ 264 (492)
+++|+.|++.++.
T Consensus 427 l~~L~~L~l~~n~ 439 (562)
T 3a79_B 427 AESILVLNLSSNM 439 (562)
T ss_dssp CTTCCEEECCSSC
T ss_pred cccCCEEECCCCC
Confidence 4678888888775
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=2.9e-23 Score=208.39 Aligned_cols=256 Identities=20% Similarity=0.233 Sum_probs=209.1
Q ss_pred CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408 1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC 80 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~ 80 (492)
+|++|++++|+++.++. +..+++|++|++++|.+ +.++.+..+++|++|++++|. +..++. +..+++|+.|++++|
T Consensus 67 ~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i-~~~~~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n 142 (347)
T 4fmz_A 67 NLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKI-TDISALQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGAN 142 (347)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGGGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTC
T ss_pred CccEEEccCCccccchh-hhcCCcCCEEEccCCcc-cCchHHcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCC
Confidence 58999999999999877 88999999999999965 456789999999999999975 445554 889999999999999
Q ss_pred CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc
Q 043408 81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE 160 (492)
Q Consensus 81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~ 160 (492)
..+..++....+++|++|++++|.. ..++. +..+++|++|++++|.... ++. +..+++|+.|++++|.... ++.
T Consensus 143 ~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~~~- 216 (347)
T 4fmz_A 143 HNLSDLSPLSNMTGLNYLTVTESKV-KDVTP-IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITD-ITP- 216 (347)
T ss_dssp TTCCCCGGGTTCTTCCEEECCSSCC-CCCGG-GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGG-
T ss_pred CCcccccchhhCCCCcEEEecCCCc-CCchh-hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCC-Cch-
Confidence 8788777756999999999999754 44443 8899999999999987554 443 7889999999999975443 333
Q ss_pred cCCcccccccccccccccccccccccCCCCcccccCCCcC-CccccCCCCCCcEEecCCCcccccchhhhcCcccccccc
Q 043408 161 LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKE-LPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRI 239 (492)
Q Consensus 161 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~-lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L 239 (492)
++.+++|+.|++++|.+..++. +..+++|+.|+++++.- -.+.+..+++|+.|++++|.++.++ .+..+++|+.|++
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L 294 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFL 294 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEEC
T ss_pred hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEEC
Confidence 7888999999999999998877 88899999999998762 2246788999999999999998885 5888999999999
Q ss_pred ccccccccCCC---CCcccceeecccccccccc
Q 043408 240 SYCERLKSLPE---LPCDLSDIEAHCCSSLEAL 269 (492)
Q Consensus 240 ~~c~~l~~lp~---l~~sL~~L~~~~C~~L~~l 269 (492)
++|+.....|+ ..++|+.|++.+|. ++.+
T Consensus 295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~ 326 (347)
T 4fmz_A 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDI 326 (347)
T ss_dssp CSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCC
T ss_pred cCCcCCCcChhHhhccccCCEEEccCCc-cccc
Confidence 99865444433 25788999998886 4443
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=5.5e-23 Score=214.74 Aligned_cols=250 Identities=21% Similarity=0.220 Sum_probs=184.2
Q ss_pred CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408 1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC 80 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~ 80 (492)
+|++|++++++++.++ ++..+++|++|+|++|.+.. +| ++.+++|++|++++|. +..++ ++.+++|++|++++|
T Consensus 43 ~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-~~-~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 43 TLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT-LD-LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTN 116 (457)
T ss_dssp TCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEECCSS
T ss_pred CCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe-Ec-cccCCCCCEEECcCCC-Cceee--cCCCCcCCEEECCCC
Confidence 5789999999999886 78889999999999997654 44 8899999999999976 44444 888999999999998
Q ss_pred CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc
Q 043408 81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE 160 (492)
Q Consensus 81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~ 160 (492)
. ++.++ ...+++|++|++++|. +..++ ++++++|++|++++|..++.+ .++.+++|++|++++|.. ..+|
T Consensus 117 ~-l~~l~-~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l-~~l~-- 186 (457)
T 3bz5_A 117 K-LTKLD-VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI-TELD-- 186 (457)
T ss_dssp C-CSCCC-CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC-CCCC--
T ss_pred c-CCeec-CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc-ceec--
Confidence 6 56665 3488999999999865 44443 788889999999988777766 467888888888888644 4455
Q ss_pred cCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccch-hhhcCc-----
Q 043408 161 LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPE-SIICLS----- 232 (492)
Q Consensus 161 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~----- 232 (492)
++.+++|+.|++++|.++.++ +..+++|+.|+++++. .+| ++.+++|+.|++++|.++.+|. .+..+.
T Consensus 187 l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 187 VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCI 262 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECT
T ss_pred cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEecc
Confidence 777888888888888888763 7778888888888775 355 6777888888888888776552 222222
Q ss_pred --cccccccccccccccCCCC-Ccccceeeccccccccccc
Q 043408 233 --HLYWLRISYCERLKSLPEL-PCDLSDIEAHCCSSLEALS 270 (492)
Q Consensus 233 --~L~~L~L~~c~~l~~lp~l-~~sL~~L~~~~C~~L~~l~ 270 (492)
+|+.|++++|+.++.+|.. .++|+.|++.+|..++.++
T Consensus 263 ~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 263 QTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp TCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCCcccccccccCCEEECCCCcccceec
Confidence 3455566666555555432 3556666666665555544
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=2.5e-23 Score=212.54 Aligned_cols=254 Identities=15% Similarity=0.120 Sum_probs=200.2
Q ss_pred CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCcccccc-ccCCcCCcEEec
Q 043408 1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSS-IQYLNKLIVLNL 77 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~s-i~~L~~L~~L~L 77 (492)
+|++|+|++++++.++ ..+..+++|++|+|++|.+....|. ++++++|++|+|++|. +..+|.. ++.+++|++|++
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEEC
Confidence 5899999999999887 4789999999999999987766665 8899999999999975 5566665 488999999999
Q ss_pred cCCCCCcccC-Ccc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCC------------------Ccccccc
Q 043408 78 EHCRSLTSLS-TSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRL------------------EGLPSKI 137 (492)
Q Consensus 78 ~~~~~l~~lp-~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l------------------~~lp~~i 137 (492)
++|. +..++ ..+ .+++|++|++++|.. ..++ ++.+++|+.|++++|... ..+|.
T Consensus 149 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~-- 222 (390)
T 3o6n_A 149 SNNN-LERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG-- 222 (390)
T ss_dssp CSSC-CCBCCTTTTSSCTTCCEEECCSSCC-SBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC--
T ss_pred CCCc-cCccChhhccCCCCCCEEECCCCcC-Cccc--cccccccceeecccccccccCCCCcceEEECCCCeeeeccc--
Confidence 9987 44444 334 889999999999654 3332 344555555555444322 12222
Q ss_pred CCCCCCCEEeccCCCCCCCcccccCCccccccccccccccccc-ccccccCCCCcccccCCCc--CCccccCCCCCCcEE
Q 043408 138 CKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRIL 214 (492)
Q Consensus 138 ~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L 214 (492)
...++|+.|++++|.... . ..++.+++|+.|++++|.+..+ |..+..+++|+.|+++++. .++..+..+++|+.|
T Consensus 223 ~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L 300 (390)
T 3o6n_A 223 PVNVELTILKLQHNNLTD-T-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 300 (390)
T ss_dssp CCCSSCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEE
T ss_pred cccccccEEECCCCCCcc-c-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEE
Confidence 234689999999976544 3 5788899999999999999866 6788999999999999986 467777889999999
Q ss_pred ecCCCcccccchhhhcCccccccccccccccccCC-CCCcccceeeccccc
Q 043408 215 FLDKNNFERIPESIICLSHLYWLRISYCERLKSLP-ELPCDLSDIEAHCCS 264 (492)
Q Consensus 215 ~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp-~l~~sL~~L~~~~C~ 264 (492)
+|++|.++.+|..+..+++|+.|++++|+ +..++ ...++|+.|++.+++
T Consensus 301 ~L~~n~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 301 DLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp ECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSSC
T ss_pred ECCCCcceecCccccccCcCCEEECCCCc-cceeCchhhccCCEEEcCCCC
Confidence 99999999999999999999999999986 45554 345788888887753
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=8.1e-23 Score=218.93 Aligned_cols=264 Identities=18% Similarity=0.133 Sum_probs=212.0
Q ss_pred CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408 1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE 78 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~ 78 (492)
+|++|+|++|+|+.++ ..+..+++|++|+|++|.+....|+ |.++++|++|+|++|. +..+|.. .+++|++|+++
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--PMASLRHLDLS 129 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC--CCTTCSEEECC
T ss_pred CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--ccccCCEEECC
Confidence 5899999999999887 6899999999999999987766565 8999999999999975 5578876 89999999999
Q ss_pred CCCCCcccC--Ccc-CCCCCCEEEeeCCCCCcccCccccCCCCC--cEEEcccCCC--CCccccccCCCC----------
Q 043408 79 HCRSLTSLS--TSI-HLESLKTLILSGCSNLMKLPSSIERLSSL--ILLNLRNCSR--LEGLPSKICKLK---------- 141 (492)
Q Consensus 79 ~~~~l~~lp--~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L--~~L~L~~~~~--l~~lp~~i~~l~---------- 141 (492)
+|. +..++ ..+ ++++|++|++++|.... ..+..+++| ++|++++|.. .+..|..+..+.
T Consensus 130 ~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 130 FND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp SSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCC-ccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 987 55543 444 89999999999976543 345555666 9999999987 555555444332
Q ss_pred -----------------------------------------------------------------------CCCEEeccC
Q 043408 142 -----------------------------------------------------------------------SLERLNLSG 150 (492)
Q Consensus 142 -----------------------------------------------------------------------~L~~L~Ls~ 150 (492)
+|++|++++
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 285 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence 666777776
Q ss_pred CCCCCCccccc-----------------------------------------------------CCcccccccccccccc
Q 043408 151 CSNLQRLPNEL-----------------------------------------------------GNLEALKELKAEGIAI 177 (492)
Q Consensus 151 c~~l~~lp~~l-----------------------------------------------------~~l~~L~~L~l~~~~i 177 (492)
|...+.+|..+ +.+++|+.|++++|.+
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l 365 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC
T ss_pred cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcc
Confidence 65555666544 6778999999999999
Q ss_pred cc-cccccccCCCCcccccCCCc--C---CccccCCCCCCcEEecCCCcccc-cch-hhhcCccccccccccccccccCC
Q 043408 178 RE-VPSSIVCLKNLGRLSFESFK--E---LPECLGQLSSLRILFLDKNNFER-IPE-SIICLSHLYWLRISYCERLKSLP 249 (492)
Q Consensus 178 ~~-lp~~~~~l~~L~~L~l~~~~--~---lp~~l~~l~~L~~L~L~~n~l~~-lp~-~l~~l~~L~~L~L~~c~~l~~lp 249 (492)
.. +|..+..+++|+.|+++++. . +|..++.+++|+.|++++|.++. +|. .+..+++|+.|++++|..-..+|
T Consensus 366 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 445 (562)
T 3a79_B 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445 (562)
T ss_dssp CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG
T ss_pred ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh
Confidence 86 77889999999999999986 2 34568999999999999999986 876 47789999999999998666666
Q ss_pred CCC-cccceeeccccccccccccc
Q 043408 250 ELP-CDLSDIEAHCCSSLEALSGL 272 (492)
Q Consensus 250 ~l~-~sL~~L~~~~C~~L~~l~~~ 272 (492)
... ++|+.|++.++ .++.++..
T Consensus 446 ~~l~~~L~~L~L~~N-~l~~ip~~ 468 (562)
T 3a79_B 446 RCLPPKVKVLDLHNN-RIMSIPKD 468 (562)
T ss_dssp SSCCTTCSEEECCSS-CCCCCCTT
T ss_pred hhhcCcCCEEECCCC-cCcccChh
Confidence 544 69999999987 67766653
No 32
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=2.9e-24 Score=216.65 Aligned_cols=254 Identities=20% Similarity=0.179 Sum_probs=136.5
Q ss_pred EEccCCCcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCC
Q 043408 5 LEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSL 83 (492)
Q Consensus 5 L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l 83 (492)
.++++++++.+|.++. ++|++|++++|.+....+ .+.++++|++|+|++|......+..++.+++|++|++++|. +
T Consensus 36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l 112 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-L 112 (353)
T ss_dssp EECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-C
T ss_pred eeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-C
Confidence 4555666666665443 366666666665443333 25666666666666654333334456666666666666654 4
Q ss_pred cccCCc-c-CCCCCCEEEeeCCCCCcccCc--cccCCCCCcEEEcccCCCCCcc-ccccCCCCCCCEEeccCCCCCCCcc
Q 043408 84 TSLSTS-I-HLESLKTLILSGCSNLMKLPS--SIERLSSLILLNLRNCSRLEGL-PSKICKLKSLERLNLSGCSNLQRLP 158 (492)
Q Consensus 84 ~~lp~~-~-~l~~L~~L~L~~c~~l~~lp~--~i~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp 158 (492)
+.++.. + ++++|++|++++| .+..+|. .+.++++|++|++++|..++.+ +..+..+++|++|++++|...+..|
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 444443 2 5666666666664 3334444 4566666666666666433333 3455666666666666655444445
Q ss_pred cccCCccccccccccccccccccccc-ccCCCCcccccCCCcC--Cc-c---ccCCCCCCcEEecCCCccc-----ccch
Q 043408 159 NELGNLEALKELKAEGIAIREVPSSI-VCLKNLGRLSFESFKE--LP-E---CLGQLSSLRILFLDKNNFE-----RIPE 226 (492)
Q Consensus 159 ~~l~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~~--lp-~---~l~~l~~L~~L~L~~n~l~-----~lp~ 226 (492)
..++.+++|++|++++|.+..+|..+ ..+++|+.|+++++.- ++ . .....+.++.++|+++.+. .+|.
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~ 271 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271 (353)
T ss_dssp TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHH
Confidence 56666666666666666666555443 2356666666665541 11 0 1122344555555555443 3555
Q ss_pred hhhcCccccccccccccccccCCCC----Ccccceeecccc
Q 043408 227 SIICLSHLYWLRISYCERLKSLPEL----PCDLSDIEAHCC 263 (492)
Q Consensus 227 ~l~~l~~L~~L~L~~c~~l~~lp~l----~~sL~~L~~~~C 263 (492)
.+..+++|+.|++++|. ++.+|.. .++|++|++.++
T Consensus 272 ~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp HHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred HHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCC
Confidence 55666666666666643 3455532 245555555554
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=8e-23 Score=204.07 Aligned_cols=237 Identities=18% Similarity=0.205 Sum_probs=198.1
Q ss_pred CceEEEccCCCcccccc-cccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408 1 NLVSLEMPHSSIKQLWK-GVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE 78 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~ 78 (492)
+|++|+|++|+|+.++. .+..+++|++|+|++|.+....|. +..+++|++|+|++|. +..+|..+. ++|+.|+++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEECC
Confidence 47899999999999875 689999999999999988766564 9999999999999965 557777665 799999999
Q ss_pred CCCCCcccCCc-c-CCCCCCEEEeeCCCCCc--ccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCC
Q 043408 79 HCRSLTSLSTS-I-HLESLKTLILSGCSNLM--KLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNL 154 (492)
Q Consensus 79 ~~~~l~~lp~~-~-~l~~L~~L~L~~c~~l~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l 154 (492)
+|. +..++.. + ++++|++|++++|.... ..+..+.++++|++|++++|... .+|..+. ++|++|++++|...
T Consensus 130 ~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 130 ENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp SSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCC
T ss_pred CCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCC
Confidence 986 5555543 2 89999999999976543 45677999999999999998754 4666554 89999999998766
Q ss_pred CCcccccCCccccccccccccccccccc-ccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhh--
Q 043408 155 QRLPNELGNLEALKELKAEGIAIREVPS-SIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESII-- 229 (492)
Q Consensus 155 ~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~-- 229 (492)
+..|..++.+++|+.|++++|.+..++. .+..+++|+.|++++|. .+|..+..+++|+.|++++|+++.++....
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~ 285 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence 6667889999999999999999997765 68899999999999986 688899999999999999999998775322
Q ss_pred -----cCccccccccccccc
Q 043408 230 -----CLSHLYWLRISYCER 244 (492)
Q Consensus 230 -----~l~~L~~L~L~~c~~ 244 (492)
....|+.|++++|+.
T Consensus 286 ~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 286 PGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp SSCCTTSCCCSEEECCSSSS
T ss_pred cccccccccccceEeecCcc
Confidence 246788889988764
No 34
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=4e-23 Score=206.47 Aligned_cols=237 Identities=18% Similarity=0.237 Sum_probs=197.7
Q ss_pred CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408 1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE 78 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~ 78 (492)
+|++|+|++|+++.++ ..+..+++|++|+|++|.+....|. +.++++|++|+|++|. +..+|..+. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCcccc--ccCCEEECC
Confidence 4789999999999886 5789999999999999987665554 8999999999999964 557777665 899999999
Q ss_pred CCCCCcccCCc-c-CCCCCCEEEeeCCCCC--cccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCC
Q 043408 79 HCRSLTSLSTS-I-HLESLKTLILSGCSNL--MKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNL 154 (492)
Q Consensus 79 ~~~~l~~lp~~-~-~l~~L~~L~L~~c~~l--~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l 154 (492)
+|. +..++.. + ++++|++|++++|... ...+..+..+ +|++|++++|... .+|..+. ++|++|++++|...
T Consensus 132 ~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 132 DNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQ 206 (332)
T ss_dssp SSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC--SSCSCCBCCSSCCC
T ss_pred CCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc--CCCCEEECCCCcCC
Confidence 987 6666654 3 8999999999997653 2456677777 9999999998754 4666554 78999999998776
Q ss_pred CCcccccCCccccccccccccccccccc-ccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccch-hhhc
Q 043408 155 QRLPNELGNLEALKELKAEGIAIREVPS-SIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPE-SIIC 230 (492)
Q Consensus 155 ~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~ 230 (492)
+..+..+..+++|+.|++++|.+..++. .+..+++|+.|++++|. .+|..+..+++|+.|++++|.++.++. .+..
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence 6666889999999999999999998775 68899999999999886 688889999999999999999998764 3322
Q ss_pred ------Ccccccccccccccc
Q 043408 231 ------LSHLYWLRISYCERL 245 (492)
Q Consensus 231 ------l~~L~~L~L~~c~~l 245 (492)
...|+.|++++|+..
T Consensus 287 ~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 287 VGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp SSCCSSSCCBSEEECCSSSSC
T ss_pred cccccccccccceEeecCccc
Confidence 467899999998743
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=3.5e-23 Score=221.41 Aligned_cols=261 Identities=19% Similarity=0.182 Sum_probs=179.1
Q ss_pred CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408 1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE 78 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~ 78 (492)
++++|+|++|+++.++ ..+..+++|++|+|++|.+....++ |+++++|++|+|++|......+..++.+++|++|+++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 4789999999999886 5788999999999999986654454 8899999999999987555555788999999999999
Q ss_pred CCCCCcccCC--ccCCCCCCEEEeeCCCCCc-ccCccccCCCCCcEEEcccCCCCCccccccCCCCCC----CEEeccCC
Q 043408 79 HCRSLTSLST--SIHLESLKTLILSGCSNLM-KLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSL----ERLNLSGC 151 (492)
Q Consensus 79 ~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L----~~L~Ls~c 151 (492)
+|. +..++. ..++++|++|++++|.... .+|..++++++|++|++++|...+..+..++.+++| +.|++++|
T Consensus 109 ~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 109 ETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred ccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 976 666655 2389999999999976544 478889999999999999987665555545444444 44554443
Q ss_pred CCC-----------------------------------------------------------------------------
Q 043408 152 SNL----------------------------------------------------------------------------- 154 (492)
Q Consensus 152 ~~l----------------------------------------------------------------------------- 154 (492)
...
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 221
Q ss_pred ----CCcccccCCcccccccccccccccccccccccCCCCcccccCCCc--CCcc--------------------ccCCC
Q 043408 155 ----QRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPE--------------------CLGQL 208 (492)
Q Consensus 155 ----~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~--------------------~l~~l 208 (492)
+.+|..++.+++|+.|+++++.+..+|..+..+ +|+.|++.++. .+|. ....+
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBC
T ss_pred hhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccC
Confidence 112233444566666666666666666655555 55555554443 1111 11566
Q ss_pred CCCcEEecCCCccccc---chhhhcCccccccccccccccccCCC---CCcccceeeccccc
Q 043408 209 SSLRILFLDKNNFERI---PESIICLSHLYWLRISYCERLKSLPE---LPCDLSDIEAHCCS 264 (492)
Q Consensus 209 ~~L~~L~L~~n~l~~l---p~~l~~l~~L~~L~L~~c~~l~~lp~---l~~sL~~L~~~~C~ 264 (492)
++|+.|++++|.++.+ |..+..+++|+.|++++|.. ..+|. ..++|+.|++.+|.
T Consensus 347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~l~~L~~L~l~~n~ 407 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSN 407 (570)
T ss_dssp TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE-EEEEEEEETCTTCCEEECTTSE
T ss_pred CCCCEEeCcCCccCccccccccccccCccCEEECCCCcc-ccccccccccCCCCEEEccCCc
Confidence 7777888887777644 56777777788888777653 22322 23566666666653
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=5.4e-23 Score=222.02 Aligned_cols=255 Identities=15% Similarity=0.097 Sum_probs=201.3
Q ss_pred CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCcccccc-ccCCcCCcEEec
Q 043408 1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSS-IQYLNKLIVLNL 77 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~s-i~~L~~L~~L~L 77 (492)
+|++|+|++|+|+.++ ..+..+++|++|+|++|.+....|. ++++++|++|+|++|. +..+|.. ++.+++|++|+|
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEe
Confidence 5889999999999887 4889999999999999987766665 7999999999999975 4466655 589999999999
Q ss_pred cCCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCC------------------CccccccC
Q 043408 78 EHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRL------------------EGLPSKIC 138 (492)
Q Consensus 78 ~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l------------------~~lp~~i~ 138 (492)
++|......|..+ .+++|++|++++|.. ..++ ++.+++|+.|++++|... ..++..
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~-- 229 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP-- 229 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCC-SBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS--
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCC-CCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc--
Confidence 9987433344334 899999999999753 3332 344555555555544332 122222
Q ss_pred CCCCCCEEeccCCCCCCCcccccCCccccccccccccccccc-ccccccCCCCcccccCCCc--CCccccCCCCCCcEEe
Q 043408 139 KLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILF 215 (492)
Q Consensus 139 ~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~ 215 (492)
..++|+.|+|++|...+ +..++.+++|+.|++++|.+..+ |..+..+++|+.|++++|. .+|..+..+++|+.|+
T Consensus 230 ~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~ 307 (597)
T 3oja_B 230 VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLD 307 (597)
T ss_dssp CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEE
T ss_pred cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEE
Confidence 23689999999986654 36788999999999999999865 6789999999999999986 4777788899999999
Q ss_pred cCCCcccccchhhhcCccccccccccccccccCC-CCCcccceeeccccc
Q 043408 216 LDKNNFERIPESIICLSHLYWLRISYCERLKSLP-ELPCDLSDIEAHCCS 264 (492)
Q Consensus 216 L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp-~l~~sL~~L~~~~C~ 264 (492)
|++|.++.+|..+..+++|+.|+|++|+. ..+| ...++|+.|++.+++
T Consensus 308 Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 308 LSHNHLLHVERNQPQFDRLENLYLDHNSI-VTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCSSCCCCCGGGHHHHTTCSEEECCSSCC-CCCCCCTTCCCSEEECCSSC
T ss_pred CCCCCCCccCcccccCCCCCEEECCCCCC-CCcChhhcCCCCEEEeeCCC
Confidence 99999999999999999999999999874 4443 346788889888764
No 37
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=2.7e-22 Score=209.99 Aligned_cols=253 Identities=20% Similarity=0.303 Sum_probs=189.6
Q ss_pred CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408 1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC 80 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~ 80 (492)
+|++|+|++|+++.++. +..+++|++|++++|.+....+ ++++++|++|+|++|. +..++. +..+++|++|++++|
T Consensus 69 ~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n 144 (466)
T 1o6v_A 69 NLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSN 144 (466)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEE
T ss_pred CCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCC
Confidence 57888888888888776 7788888888888877654433 7788888888888764 444443 677777777777776
Q ss_pred CCCccc---------------------CCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCC
Q 043408 81 RSLTSL---------------------STSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICK 139 (492)
Q Consensus 81 ~~l~~l---------------------p~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~ 139 (492)
. +..+ +...++++|++|++++|. +..+ ..+..+++|++|++++|...+..| ++.
T Consensus 145 ~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 219 (466)
T 1o6v_A 145 T-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITP--LGI 219 (466)
T ss_dssp E-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCCCGG--GGG
T ss_pred c-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCC-hhhccCCCCCEEEecCCccccccc--ccc
Confidence 4 2222 222367888999998865 4444 348889999999999987766544 677
Q ss_pred CCCCCEEeccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecC
Q 043408 140 LKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLD 217 (492)
Q Consensus 140 l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~ 217 (492)
+++|+.|++++|.. ..++ .+..+++|+.|++++|.+..++. +..+++|+.|+++++. .++. +..+++|+.|+++
T Consensus 220 l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 220 LTNLDELSLNGNQL-KDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELN 295 (466)
T ss_dssp CTTCCEEECCSSCC-CCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECC
T ss_pred cCCCCEEECCCCCc-ccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcC
Confidence 89999999999754 3443 57788899999999999988776 8888999999998876 3444 7888999999999
Q ss_pred CCcccccchhhhcCccccccccccccccccCCC--CCcccceeecccccccccc
Q 043408 218 KNNFERIPESIICLSHLYWLRISYCERLKSLPE--LPCDLSDIEAHCCSSLEAL 269 (492)
Q Consensus 218 ~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~--l~~sL~~L~~~~C~~L~~l 269 (492)
+|.++.++. +..+++|+.|++++|+ +..++. ..++|+.|++.+| .+..+
T Consensus 296 ~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n-~l~~~ 346 (466)
T 1o6v_A 296 ENQLEDISP-ISNLKNLTYLTLYFNN-ISDISPVSSLTKLQRLFFYNN-KVSDV 346 (466)
T ss_dssp SSCCSCCGG-GGGCTTCSEEECCSSC-CSCCGGGGGCTTCCEEECCSS-CCCCC
T ss_pred CCcccCchh-hcCCCCCCEEECcCCc-CCCchhhccCccCCEeECCCC-ccCCc
Confidence 999887775 7888999999999985 444433 2568888888887 34444
No 38
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=1.1e-22 Score=198.76 Aligned_cols=217 Identities=22% Similarity=0.224 Sum_probs=143.5
Q ss_pred eEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408 3 VSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR 81 (492)
Q Consensus 3 ~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~ 81 (492)
++++.++++++.+|.++ .++|++|+|++|.+....+. +..+++|++|+|++|......+..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 46778888888887654 46888888888876554443 7888888888888875554446677888888888888876
Q ss_pred CCccc-CCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcc-
Q 043408 82 SLTSL-STSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLP- 158 (492)
Q Consensus 82 ~l~~l-p~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp- 158 (492)
.+..+ +..+ .+++|++|++++|......+..+.++++|++|++++|......+..+..+++|++|++++|... .++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~ 170 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPE 170 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCH
Confidence 56665 3333 6778888888876554444566777788888888877665555555777777777777776433 343
Q ss_pred cccCCccccccccccccccccc-ccccccCCCCcccccCCCc--CCc-cccCCCCCCcEEecCCCccc
Q 043408 159 NELGNLEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESFK--ELP-ECLGQLSSLRILFLDKNNFE 222 (492)
Q Consensus 159 ~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~--~lp-~~l~~l~~L~~L~L~~n~l~ 222 (492)
..+..+++|+.|++++|.+..+ |..+..+++|+.|+++++. .++ ..+..+++|+.|++++|.+.
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 3467777777777777777655 4445555555555555443 122 22444555555555555443
No 39
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=4.5e-23 Score=203.56 Aligned_cols=237 Identities=19% Similarity=0.215 Sum_probs=171.8
Q ss_pred eEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccC--ccccccccCCcCCcEEeccC
Q 043408 3 VSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSL--LETHSSIQYLNKLIVLNLEH 79 (492)
Q Consensus 3 ~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l--~~~~~si~~L~~L~~L~L~~ 79 (492)
+.++.++++++.+|.++. ++|++|+|++|.+....+. +.++++|++|+|++|... ...+..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 467888889999987654 6899999999886543333 788999999999987543 22356677789999999998
Q ss_pred CCCCcccCCcc-CCCCCCEEEeeCCCCCcccC--ccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCC-
Q 043408 80 CRSLTSLSTSI-HLESLKTLILSGCSNLMKLP--SSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQ- 155 (492)
Q Consensus 80 ~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp--~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~- 155 (492)
|. +..++..+ .+++|++|++++|. +..++ ..+..+++|++|++++|...+..+..+..+++|++|++++|...+
T Consensus 88 n~-i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 88 NG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp CS-EEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred Cc-cccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 76 55666545 88899999998864 34444 467888889999998888777777778888888888888876554
Q ss_pred CcccccCCccccccccccccccccc-ccccccCCCCcccccCCCc--CCc-cccCCCCCCcEEecCCCcccc-cchhhhc
Q 043408 156 RLPNELGNLEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESFK--ELP-ECLGQLSSLRILFLDKNNFER-IPESIIC 230 (492)
Q Consensus 156 ~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~--~lp-~~l~~l~~L~~L~L~~n~l~~-lp~~l~~ 230 (492)
.+|..++.+++|+.|++++|.++.+ |..+..+++|+.|+++++. .++ ..+..+++|+.|+|++|.++. .|..+..
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 4677788888888888888888866 4556666667666666654 222 245666666667776666653 3445555
Q ss_pred C-cccccccccccc
Q 043408 231 L-SHLYWLRISYCE 243 (492)
Q Consensus 231 l-~~L~~L~L~~c~ 243 (492)
+ ++|+.|++++|+
T Consensus 246 ~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 246 FPSSLAFLNLTQND 259 (306)
T ss_dssp CCTTCCEEECTTCC
T ss_pred hhccCCEEEccCCC
Confidence 5 366666666654
No 40
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=2.4e-22 Score=208.86 Aligned_cols=235 Identities=25% Similarity=0.305 Sum_probs=182.6
Q ss_pred eEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408 3 VSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR 81 (492)
Q Consensus 3 ~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~ 81 (492)
..++..+.+++.+|.++. ++++.|+|++|.+....+ .|.++++|++|+|++|......+..+..+++|++|+|++|.
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 466777888888887665 688999999988665544 48889999999999876555555678889999999999875
Q ss_pred CCcccCCc-c-CCCCCCEEEeeCCCCCcccC-ccccCCCCCcEEEcccCCCCCcccc-ccCCCCCCCEEeccCCCCCCCc
Q 043408 82 SLTSLSTS-I-HLESLKTLILSGCSNLMKLP-SSIERLSSLILLNLRNCSRLEGLPS-KICKLKSLERLNLSGCSNLQRL 157 (492)
Q Consensus 82 ~l~~lp~~-~-~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~l 157 (492)
++.++.. + .+++|++|++++|. +..++ ..+.++++|++|++++|..+..++. .+.++++|++|++++| .+..+
T Consensus 124 -l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~ 200 (440)
T 3zyj_A 124 -LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREI 200 (440)
T ss_dssp -CSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSC
T ss_pred -CCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccc
Confidence 6666653 3 78899999999865 44444 4688889999999998877777665 5778889999999886 44566
Q ss_pred ccccCCccccccccccccccccc-ccccccCCCCcccccCCCcC---CccccCCCCCCcEEecCCCcccccch-hhhcCc
Q 043408 158 PNELGNLEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESFKE---LPECLGQLSSLRILFLDKNNFERIPE-SIICLS 232 (492)
Q Consensus 158 p~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~---lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~ 232 (492)
| .+..+++|+.|++++|.+..+ |..+..+++|+.|++.++.- .+..+..+++|+.|+|++|+++.+|. .+..++
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 6 477888899999999988866 56778888888888888762 35567888888888888888887764 456788
Q ss_pred ccccccccccc
Q 043408 233 HLYWLRISYCE 243 (492)
Q Consensus 233 ~L~~L~L~~c~ 243 (492)
+|+.|+|++|+
T Consensus 280 ~L~~L~L~~Np 290 (440)
T 3zyj_A 280 HLERIHLHHNP 290 (440)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEcCCCC
Confidence 88888888875
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=8.9e-23 Score=217.52 Aligned_cols=130 Identities=25% Similarity=0.285 Sum_probs=83.7
Q ss_pred CCCCCCEEeccCCCCCCCccc---ccCCccccccccccccccccccc---ccccCCCCcccccCCCc--CCccccCCCCC
Q 043408 139 KLKSLERLNLSGCSNLQRLPN---ELGNLEALKELKAEGIAIREVPS---SIVCLKNLGRLSFESFK--ELPECLGQLSS 210 (492)
Q Consensus 139 ~l~~L~~L~Ls~c~~l~~lp~---~l~~l~~L~~L~l~~~~i~~lp~---~~~~l~~L~~L~l~~~~--~lp~~l~~l~~ 210 (492)
++++|++|++++|...+.+|. .++.+++|+.|++++|.++.++. .+..+++|+.|++++|. .+|..++.+++
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~ 411 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK 411 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhccccc
Confidence 466677777777655544432 25566667777777776665542 35666666666666654 45656666666
Q ss_pred CcEEecCCCcccccchhh------------------hcCccccccccccccccccCCCC--Ccccceeeccccccccccc
Q 043408 211 LRILFLDKNNFERIPESI------------------ICLSHLYWLRISYCERLKSLPEL--PCDLSDIEAHCCSSLEALS 270 (492)
Q Consensus 211 L~~L~L~~n~l~~lp~~l------------------~~l~~L~~L~L~~c~~l~~lp~l--~~sL~~L~~~~C~~L~~l~ 270 (492)
|+.|++++|.++.+|..+ ..+++|+.|++++| .++.+|.. .++|+.|++.++ .++.++
T Consensus 412 L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N-~l~~~~ 489 (549)
T 2z81_A 412 MRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRN-QLKSVP 489 (549)
T ss_dssp CCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSS-CCCCCC
T ss_pred ccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCC-ccCCcC
Confidence 666666666655444332 36788999999997 46688864 578999999886 455443
No 42
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=1.2e-23 Score=209.00 Aligned_cols=236 Identities=15% Similarity=0.116 Sum_probs=124.9
Q ss_pred ceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408 2 LVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC 80 (492)
Q Consensus 2 L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~ 80 (492)
|++|+|++|+++.++ ..+..+++|++|+|++|.+.... .+..+++|++|+|++|. +..++ ..++|++|++++|
T Consensus 36 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~L~l~~n 109 (317)
T 3o53_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNY-VQELL----VGPSIETLHAANN 109 (317)
T ss_dssp CSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-EETTCTTCCEEECCSSE-EEEEE----ECTTCCEEECCSS
T ss_pred CCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-hhhhcCCCCEEECcCCc-ccccc----CCCCcCEEECCCC
Confidence 455555555555443 34555555555555555443222 25555555555555543 22222 2355555555554
Q ss_pred CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCcccccc-CCCCCCCEEeccCCCCCCCccc
Q 043408 81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKI-CKLKSLERLNLSGCSNLQRLPN 159 (492)
Q Consensus 81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i-~~l~~L~~L~Ls~c~~l~~lp~ 159 (492)
. +..++. ..+++|++|++++|......+..++.+++|++|++++|...+..+..+ ..+++|++|++++|. +..++.
T Consensus 110 ~-l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 186 (317)
T 3o53_A 110 N-ISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG 186 (317)
T ss_dssp C-CSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC
T ss_pred c-cCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccccc
Confidence 4 333322 134556666666644333333455556666666666655554444443 245666666666643 223322
Q ss_pred ccCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCccc--ccchhhhcCcccc
Q 043408 160 ELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFE--RIPESIICLSHLY 235 (492)
Q Consensus 160 ~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~ 235 (492)
...+++|+.|++++|.+..+|..+..+++|+.|++++|. .+|..+..+++|+.|++++|.++ .+|..+..+++|+
T Consensus 187 -~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~ 265 (317)
T 3o53_A 187 -QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (317)
T ss_dssp -CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred -ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccce
Confidence 223556666666666666665556666666666666554 35555556666666666666655 4555566666666
Q ss_pred cccccccccccc
Q 043408 236 WLRISYCERLKS 247 (492)
Q Consensus 236 ~L~L~~c~~l~~ 247 (492)
.|++++|+.++.
T Consensus 266 ~l~l~~~~~l~~ 277 (317)
T 3o53_A 266 TVAKQTVKKLTG 277 (317)
T ss_dssp HHHHHHHHHHHS
T ss_pred EEECCCchhccC
Confidence 666665555443
No 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=3.2e-23 Score=204.62 Aligned_cols=220 Identities=25% Similarity=0.298 Sum_probs=187.5
Q ss_pred CceEEEccCCCccccccc-ccCCCCCcEEEccCCCCCCC---CCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEe
Q 043408 1 NLVSLEMPHSSIKQLWKG-VQRLVNLKHLNLSHSEHLTK---IPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLN 76 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~---~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~ 76 (492)
+|++|+|++|+++.++.+ +..+++|++|+|++|.+... ...+..+++|++|+|++|. +..++..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEEE
Confidence 588999999999999865 68999999999999976532 1336678999999999975 556888899999999999
Q ss_pred ccCCCCCcccCC--cc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCC-ccccccCCCCCCCEEeccCCC
Q 043408 77 LEHCRSLTSLST--SI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLE-GLPSKICKLKSLERLNLSGCS 152 (492)
Q Consensus 77 L~~~~~l~~lp~--~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~Ls~c~ 152 (492)
+++|. +..++. .+ .+++|++|++++|......+..+..+++|++|++++|...+ .+|..+..+++|++|++++|.
T Consensus 108 l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 108 FQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp CTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred CCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 99986 555543 23 89999999999987666667779999999999999998766 578889999999999999987
Q ss_pred CCCCcccccCCccccccccccccccccccc-ccccCCCCcccccCCCc---CCccccCCCC-CCcEEecCCCccc
Q 043408 153 NLQRLPNELGNLEALKELKAEGIAIREVPS-SIVCLKNLGRLSFESFK---ELPECLGQLS-SLRILFLDKNNFE 222 (492)
Q Consensus 153 ~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~---~lp~~l~~l~-~L~~L~L~~n~l~ 222 (492)
..+..|..++.+++|+.|++++|.+..++. .+..+++|+.|++++|. ..+..+..++ +|+.|+|++|.++
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 666667889999999999999999998766 67889999999999987 3566778874 9999999999987
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=2.7e-22 Score=209.12 Aligned_cols=235 Identities=25% Similarity=0.301 Sum_probs=178.4
Q ss_pred eEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408 3 VSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR 81 (492)
Q Consensus 3 ~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~ 81 (492)
..++..+.+++.+|.++. ++|++|+|++|.+....++ |.++++|++|+|++|......+..+..+++|++|+|++|.
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 456777778888886654 6888899988877655444 8888889999998876555555678888889999988876
Q ss_pred CCcccCCc-c-CCCCCCEEEeeCCCCCcccCc-cccCCCCCcEEEcccCCCCCcccc-ccCCCCCCCEEeccCCCCCCCc
Q 043408 82 SLTSLSTS-I-HLESLKTLILSGCSNLMKLPS-SIERLSSLILLNLRNCSRLEGLPS-KICKLKSLERLNLSGCSNLQRL 157 (492)
Q Consensus 82 ~l~~lp~~-~-~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~l 157 (492)
+..++.. + .+++|++|++++|. +..++. .+.++++|++|++++|..++.++. .+..+++|++|++++|. +..+
T Consensus 135 -l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~ 211 (452)
T 3zyi_A 135 -LTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDM 211 (452)
T ss_dssp -CSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSC
T ss_pred -CCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccc
Confidence 6666654 3 68888888888865 444444 678888888888888777777665 47788888888888864 4445
Q ss_pred ccccCCccccccccccccccccc-ccccccCCCCcccccCCCcC---CccccCCCCCCcEEecCCCcccccch-hhhcCc
Q 043408 158 PNELGNLEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESFKE---LPECLGQLSSLRILFLDKNNFERIPE-SIICLS 232 (492)
Q Consensus 158 p~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~---lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~ 232 (492)
| .+..+++|+.|++++|.+..+ |..+..+++|+.|++.++.- .+..+..+++|+.|+|++|+++.+|. .+..++
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 5 477788888888888888866 55678888888888887762 35567788888888888888887764 456788
Q ss_pred ccccccccccc
Q 043408 233 HLYWLRISYCE 243 (492)
Q Consensus 233 ~L~~L~L~~c~ 243 (492)
+|+.|+|++|+
T Consensus 291 ~L~~L~L~~Np 301 (452)
T 3zyi_A 291 YLVELHLHHNP 301 (452)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEccCCC
Confidence 88888888875
No 45
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=4.3e-22 Score=208.41 Aligned_cols=249 Identities=23% Similarity=0.310 Sum_probs=171.1
Q ss_pred CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408 1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC 80 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~ 80 (492)
+|+.|++.+++++.++ ++..+++|++|+|++|.+.. ++.+..+++|++|++++|... .++. ++.+++|++|++++|
T Consensus 47 ~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~-~~~~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~L~~n 122 (466)
T 1o6v_A 47 QVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQIA-DITP-LANLTNLTGLTLFNN 122 (466)
T ss_dssp TCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSS
T ss_pred cccEEecCCCCCccCc-chhhhcCCCEEECCCCccCC-chhhhccccCCEEECCCCccc-cChh-hcCCCCCCEEECCCC
Confidence 4789999999999987 57889999999999998654 444999999999999997544 4444 899999999999998
Q ss_pred CCCcccCCccCCCCCCEEEeeCCCCCcccCc--------------------cccCCCCCcEEEcccCCCCCccccccCCC
Q 043408 81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPS--------------------SIERLSSLILLNLRNCSRLEGLPSKICKL 140 (492)
Q Consensus 81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~--------------------~i~~l~~L~~L~L~~~~~l~~lp~~i~~l 140 (492)
. +..++...++++|++|++++|.. ..++. .+.++++|++|++++|.... ++ .+..+
T Consensus 123 ~-l~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l 198 (466)
T 1o6v_A 123 Q-ITDIDPLKNLTNLNRLELSSNTI-SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-IS-VLAKL 198 (466)
T ss_dssp C-CCCCGGGTTCTTCSEEEEEEEEE-CCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-CG-GGGGC
T ss_pred C-CCCChHHcCCCCCCEEECCCCcc-CCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC-Ch-hhccC
Confidence 6 67777655899999999998753 33321 14445555555555554322 22 24555
Q ss_pred CCCCEEeccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCC
Q 043408 141 KSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDK 218 (492)
Q Consensus 141 ~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~ 218 (492)
++|++|++++|...+..| ++.+++|+.|++++|.+..++ .+..+++|+.|++++|. .++. +..+++|+.|++++
T Consensus 199 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~ 274 (466)
T 1o6v_A 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGA 274 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCS
T ss_pred CCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCC
Confidence 666666666654333222 455666666666666666553 35666677777776665 2322 66777777777777
Q ss_pred CcccccchhhhcCccccccccccccccccCCCC--Ccccceeecccc
Q 043408 219 NNFERIPESIICLSHLYWLRISYCERLKSLPEL--PCDLSDIEAHCC 263 (492)
Q Consensus 219 n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l--~~sL~~L~~~~C 263 (492)
|.++.++. +..+++|+.|++++|. +..++.+ .++|+.|++.+|
T Consensus 275 n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 275 NQISNISP-LAGLTALTNLELNENQ-LEDISPISNLKNLTYLTLYFN 319 (466)
T ss_dssp SCCCCCGG-GTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEEECCSS
T ss_pred CccCcccc-ccCCCccCeEEcCCCc-ccCchhhcCCCCCCEEECcCC
Confidence 77776665 6677777777777764 3444432 456777777776
No 46
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=3.1e-22 Score=224.56 Aligned_cols=262 Identities=18% Similarity=0.170 Sum_probs=190.5
Q ss_pred CceEEEccCCCcccc-cccccCCCCCcEEEccCCCCCCCC-C-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEec
Q 043408 1 NLVSLEMPHSSIKQL-WKGVQRLVNLKHLNLSHSEHLTKI-P-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNL 77 (492)
Q Consensus 1 nL~~L~L~~s~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~-p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L 77 (492)
+|++|+|++|+|+.+ +..+..+++|++|+|++|.....+ | .|+++++|++|+|++|......|..++.+++|++|+|
T Consensus 25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 104 (844)
T 3j0a_A 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL 104 (844)
T ss_dssp TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEEC
T ss_pred CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeC
Confidence 578999999999987 478899999999999999766665 3 3899999999999998877777889999999999999
Q ss_pred cCCCCCcccCCc--c-CCCCCCEEEeeCCCCCcccC-ccccCCCCCcEEEcccCCCCCccccccCCC--CC---------
Q 043408 78 EHCRSLTSLSTS--I-HLESLKTLILSGCSNLMKLP-SSIERLSSLILLNLRNCSRLEGLPSKICKL--KS--------- 142 (492)
Q Consensus 78 ~~~~~l~~lp~~--~-~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l--~~--------- 142 (492)
++|.....++.. + ++++|++|++++|......+ ..++++++|++|+|++|...+..+..+..+ ++
T Consensus 105 s~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n 184 (844)
T 3j0a_A 105 YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184 (844)
T ss_dssp TTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCS
T ss_pred cCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCC
Confidence 998754445543 3 89999999999976555433 578999999999999988766555544433 33
Q ss_pred ---------------------CCEEeccCCCCCCCcccccC------------------------------------C--
Q 043408 143 ---------------------LERLNLSGCSNLQRLPNELG------------------------------------N-- 163 (492)
Q Consensus 143 ---------------------L~~L~Ls~c~~l~~lp~~l~------------------------------------~-- 163 (492)
|+.|++++|......+..+. .
T Consensus 185 ~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~ 264 (844)
T 3j0a_A 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264 (844)
T ss_dssp BSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTT
T ss_pred ccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccc
Confidence 55555555533222221111 0
Q ss_pred ccccccccccccccccc-ccccccCCCCcccccCCCcC---CccccCCCCCCcEEecCCCccccc-chhhhcCccccccc
Q 043408 164 LEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESFKE---LPECLGQLSSLRILFLDKNNFERI-PESIICLSHLYWLR 238 (492)
Q Consensus 164 l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~---lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~ 238 (492)
.++|+.|++++|.+..+ |..+..+++|+.|+++++.- .+..+..+++|+.|+|++|.++.+ |..+..+++|+.|+
T Consensus 265 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp TSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred cCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence 14566666666666644 34566777777777777652 355677888888888888887755 56777888888888
Q ss_pred cccccccccCCCC----Ccccceeecccc
Q 043408 239 ISYCERLKSLPEL----PCDLSDIEAHCC 263 (492)
Q Consensus 239 L~~c~~l~~lp~l----~~sL~~L~~~~C 263 (492)
+++|. +..++.. .++|+.|++.++
T Consensus 345 L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 345 LQKNH-IAIIQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp CCSCC-CCCCCSSCSCSCCCCCEEEEETC
T ss_pred CCCCC-CCccChhhhcCCCCCCEEECCCC
Confidence 88874 5555531 467888888775
No 47
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=7.5e-22 Score=215.96 Aligned_cols=221 Identities=22% Similarity=0.195 Sum_probs=111.1
Q ss_pred ceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCc-----cccc----cccCCc
Q 043408 2 LVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLL-----ETHS----SIQYLN 70 (492)
Q Consensus 2 L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~-----~~~~----si~~L~ 70 (492)
|++|+|++|+++.++ ..+..+++|++|+|++|.+....|. +.++++|++|++++|.... .+|. .+..++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 677777777777554 4566677777777777765544332 4555555555554432111 1111 333444
Q ss_pred CCcEEeccCCCCCcccCCcc-CCCC----------------------------CCEEEeeCCCCCcccCccccCCCCCcE
Q 043408 71 KLIVLNLEHCRSLTSLSTSI-HLES----------------------------LKTLILSGCSNLMKLPSSIERLSSLIL 121 (492)
Q Consensus 71 ~L~~L~L~~~~~l~~lp~~~-~l~~----------------------------L~~L~L~~c~~l~~lp~~i~~l~~L~~ 121 (492)
+|++|++++|......+..+ ++++ |+.|++++|......|..+..+++|++
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 45555544443211111111 3333 444444443333334556677777777
Q ss_pred EEcccCCCCCccc-cccCCCCCCCEEeccCCCCCCCcccccCCccccccccccccccc---ccccccccCCCCcccccCC
Q 043408 122 LNLRNCSRLEGLP-SKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIR---EVPSSIVCLKNLGRLSFES 197 (492)
Q Consensus 122 L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~ 197 (492)
|++++|...+.+| ..+..+++|++|++++|......+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 7777776665554 45666777777777766543333344444444555555444432 3344444444444444444
Q ss_pred Cc--CCc-cccCCCCCCcEEecCCCccc
Q 043408 198 FK--ELP-ECLGQLSSLRILFLDKNNFE 222 (492)
Q Consensus 198 ~~--~lp-~~l~~l~~L~~L~L~~n~l~ 222 (492)
+. .++ ..+..+++|+.|++++|.++
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 517 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLA 517 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred CCCCcCChhhhccccccCEEeCCCCCcc
Confidence 43 122 22444444444444444444
No 48
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=6.2e-22 Score=216.62 Aligned_cols=269 Identities=23% Similarity=0.234 Sum_probs=211.1
Q ss_pred CceEEEccCCCcc------cccc----cccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCccc-Ccccccc-cc
Q 043408 1 NLVSLEMPHSSIK------QLWK----GVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTS-LLETHSS-IQ 67 (492)
Q Consensus 1 nL~~L~L~~s~i~------~l~~----~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~-l~~~~~s-i~ 67 (492)
+|++|+++++... .++. .+..+++|++|++++|.+....+. +..+++|++|++++|.. +..++.. +.
T Consensus 297 ~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~ 376 (680)
T 1ziw_A 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFV 376 (680)
T ss_dssp TCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTG
T ss_pred CccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhc
Confidence 5789999876433 3332 677899999999999987766554 88999999999998753 3333321 22
Q ss_pred C--CcCCcEEeccCCCCCcccCCcc-CCCCCCEEEeeCCCCCcccC-ccccCCCCCcEEEcccCCCCCccccccCCCCCC
Q 043408 68 Y--LNKLIVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLP-SSIERLSSLILLNLRNCSRLEGLPSKICKLKSL 143 (492)
Q Consensus 68 ~--L~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L 143 (492)
. ..+|+.|++++|......|..+ .+++|++|++++|.....+| ..+.++++|++|++++|......+..+..+++|
T Consensus 377 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L 456 (680)
T 1ziw_A 377 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 456 (680)
T ss_dssp GGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTC
T ss_pred ccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCccc
Confidence 2 3689999999987444445545 79999999999977656666 578999999999999998777777888899999
Q ss_pred CEEeccCCCCC--CCcccccCCcccccccccccccccccccc-cccCCCCcccccCCCcC--C-----c----cccCCCC
Q 043408 144 ERLNLSGCSNL--QRLPNELGNLEALKELKAEGIAIREVPSS-IVCLKNLGRLSFESFKE--L-----P----ECLGQLS 209 (492)
Q Consensus 144 ~~L~Ls~c~~l--~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~--l-----p----~~l~~l~ 209 (492)
+.|++++|... +.+|..++.+++|+.|++++|.+..+|.. +..+++|+.|+++++.- + | ..+..++
T Consensus 457 ~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~ 536 (680)
T 1ziw_A 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS 536 (680)
T ss_dssp CEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCT
T ss_pred ccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCC
Confidence 99999997653 57888899999999999999999988764 78899999999998762 2 2 2378899
Q ss_pred CCcEEecCCCcccccch-hhhcCccccccccccccccccCCCC----Ccccceeecccccccccccc
Q 043408 210 SLRILFLDKNNFERIPE-SIICLSHLYWLRISYCERLKSLPEL----PCDLSDIEAHCCSSLEALSG 271 (492)
Q Consensus 210 ~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~l----~~sL~~L~~~~C~~L~~l~~ 271 (492)
+|+.|+|++|.++.+|. .+..+++|+.|++++| .++.+|.. .++|+.|++.++ .++.++.
T Consensus 537 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~ 601 (680)
T 1ziw_A 537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEK 601 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCH
T ss_pred CCCEEECCCCCCCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-cCCccCh
Confidence 99999999999998886 5788999999999886 46677753 378999999887 4555543
No 49
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=4.4e-22 Score=223.29 Aligned_cols=259 Identities=20% Similarity=0.170 Sum_probs=159.0
Q ss_pred CceEEEccCCC-cccc-cccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCcccccc--ccCCcCCcEE
Q 043408 1 NLVSLEMPHSS-IKQL-WKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSS--IQYLNKLIVL 75 (492)
Q Consensus 1 nL~~L~L~~s~-i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~s--i~~L~~L~~L 75 (492)
+|++|+|++|. +..+ +..+..+++|++|+|++|.+....|+ |+++++|++|+|++|.....++.. ++.+++|++|
T Consensus 49 ~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L 128 (844)
T 3j0a_A 49 QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128 (844)
T ss_dssp SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEE
T ss_pred cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEE
Confidence 36666676663 3345 45566666677777766665544443 666666666666666554444443 5666666666
Q ss_pred eccCCCCCcccC-Ccc-CCCCCCEEEeeCCCCCcc--------------------------cCccccCCCC------CcE
Q 043408 76 NLEHCRSLTSLS-TSI-HLESLKTLILSGCSNLMK--------------------------LPSSIERLSS------LIL 121 (492)
Q Consensus 76 ~L~~~~~l~~lp-~~~-~l~~L~~L~L~~c~~l~~--------------------------lp~~i~~l~~------L~~ 121 (492)
+|++|......+ ..+ ++++|++|++++|..... .|..++.+++ |++
T Consensus 129 ~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~ 208 (844)
T 3j0a_A 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEI 208 (844)
T ss_dssp EEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSE
T ss_pred ECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeE
Confidence 666665322222 122 566666666666543222 2223333333 777
Q ss_pred EEcccCCCCCccccccC------------------------------------C--CCCCCEEeccCCCCCCCcccccCC
Q 043408 122 LNLRNCSRLEGLPSKIC------------------------------------K--LKSLERLNLSGCSNLQRLPNELGN 163 (492)
Q Consensus 122 L~L~~~~~l~~lp~~i~------------------------------------~--l~~L~~L~Ls~c~~l~~lp~~l~~ 163 (492)
|++++|......+..+. . .++|+.|++++|...+..+..++.
T Consensus 209 L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~ 288 (844)
T 3j0a_A 209 LDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET 288 (844)
T ss_dssp EBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS
T ss_pred EecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhc
Confidence 77777654433332221 1 256888888887666556677788
Q ss_pred ccccccccccccccccc-ccccccCCCCcccccCCCc--C-CccccCCCCCCcEEecCCCcccccch-hhhcCccccccc
Q 043408 164 LEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESFK--E-LPECLGQLSSLRILFLDKNNFERIPE-SIICLSHLYWLR 238 (492)
Q Consensus 164 l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~--~-lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~ 238 (492)
+++|+.|++++|.+..+ |..+..+++|+.|++++|. . .+..+..+++|+.|++++|.++.++. .+..+++|+.|+
T Consensus 289 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 368 (844)
T 3j0a_A 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD 368 (844)
T ss_dssp CCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEE
T ss_pred CCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEE
Confidence 88888888888888765 4467778888888888775 2 35677788888888888888776653 567778888888
Q ss_pred cccccccccCCCCCcccceeecc
Q 043408 239 ISYCERLKSLPELPCDLSDIEAH 261 (492)
Q Consensus 239 L~~c~~l~~lp~l~~sL~~L~~~ 261 (492)
+++|. ++.++. .++|+.|++.
T Consensus 369 Ls~N~-l~~i~~-~~~L~~L~l~ 389 (844)
T 3j0a_A 369 LRDNA-LTTIHF-IPSIPDIFLS 389 (844)
T ss_dssp EETCC-SCCCSS-CCSCSEEEEE
T ss_pred CCCCC-CCcccC-CCCcchhccC
Confidence 88764 444443 2344444443
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=1.7e-22 Score=203.68 Aligned_cols=242 Identities=21% Similarity=0.198 Sum_probs=201.2
Q ss_pred CceEEEccCCCcccccc-cccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCcccccc-ccCCcCCcEEec
Q 043408 1 NLVSLEMPHSSIKQLWK-GVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSS-IQYLNKLIVLNL 77 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~s-i~~L~~L~~L~L 77 (492)
+|++|++++|+++.++. .+..+++|++|+|++|.+....+. +.++++|++|+|++|... .++.. ++.+++|++|++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEEC
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEEC
Confidence 58999999999999885 789999999999999987665554 999999999999997544 55554 889999999999
Q ss_pred cCCCCCcccCC--cc-CCCCCCEEEeeCCCCCccc-CccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCC
Q 043408 78 EHCRSLTSLST--SI-HLESLKTLILSGCSNLMKL-PSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSN 153 (492)
Q Consensus 78 ~~~~~l~~lp~--~~-~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~ 153 (492)
++|. +..+|. .+ .+++|++|++++|..+..+ +..+.++++|++|++++|...+..|..+..+++|++|++++|.
T Consensus 132 ~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~- 209 (353)
T 2z80_A 132 LGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ- 209 (353)
T ss_dssp TTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-
T ss_pred CCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-
Confidence 9986 667776 33 8999999999998766666 4578999999999999999888889999999999999999975
Q ss_pred CCCcccc-cCCcccccccccccccccccccc----cccCCCCcccccCCCc-------CCccccCCCCCCcEEecCCCcc
Q 043408 154 LQRLPNE-LGNLEALKELKAEGIAIREVPSS----IVCLKNLGRLSFESFK-------ELPECLGQLSSLRILFLDKNNF 221 (492)
Q Consensus 154 l~~lp~~-l~~l~~L~~L~l~~~~i~~lp~~----~~~l~~L~~L~l~~~~-------~lp~~l~~l~~L~~L~L~~n~l 221 (492)
++.+|.. ++.+++|+.|++++|.+..++.. ......++.+++.++. .+|..+..+++|+.|++++|++
T Consensus 210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l 289 (353)
T 2z80_A 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL 289 (353)
T ss_dssp STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC
T ss_pred cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC
Confidence 4566654 45588999999999999865532 2334556666666654 4677889999999999999999
Q ss_pred cccchhh-hcCcccccccccccccc
Q 043408 222 ERIPESI-ICLSHLYWLRISYCERL 245 (492)
Q Consensus 222 ~~lp~~l-~~l~~L~~L~L~~c~~l 245 (492)
+.+|..+ ..+++|+.|++++|+..
T Consensus 290 ~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 290 KSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCHHHHhcCCCCCEEEeeCCCcc
Confidence 9999875 89999999999998643
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=4.5e-22 Score=194.39 Aligned_cols=242 Identities=17% Similarity=0.124 Sum_probs=184.7
Q ss_pred CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccc-cccccCCcCCcEEec
Q 043408 1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLET-HSSIQYLNKLIVLNL 77 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~-~~si~~L~~L~~L~L 77 (492)
+|++|+|++++++.++ ..+..+++|++|+|++|.+....+ .+..+++|++|+|++|..+..+ +..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 5789999999999887 568999999999999998765545 4899999999999998756666 677899999999999
Q ss_pred cCCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCC
Q 043408 78 EHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQR 156 (492)
Q Consensus 78 ~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~ 156 (492)
++|......+..+ ++++|++|++++|......+..++.+++|++|++++|......+..+..+++|++|++++|...+.
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 9987433334444 799999999999765443445589999999999999876655555689999999999999877766
Q ss_pred cccccCCccccccccccccccccccc-ccccCCCCcccccCCCcCCc--cccCCCCCCcEEecCCCccc-ccchhhhc--
Q 043408 157 LPNELGNLEALKELKAEGIAIREVPS-SIVCLKNLGRLSFESFKELP--ECLGQLSSLRILFLDKNNFE-RIPESIIC-- 230 (492)
Q Consensus 157 lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~lp--~~l~~l~~L~~L~L~~n~l~-~lp~~l~~-- 230 (492)
.|..++.+++|+.|++++|.+..++. .+..+++|+.|+++++.-.- ........++.+....+.+. ..|..+..
T Consensus 193 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g~~ 272 (285)
T 1ozn_A 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRD 272 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGTTCB
T ss_pred CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchHhCCcC
Confidence 78899999999999999999998885 48899999999999986210 00000112333344445544 55554433
Q ss_pred Cccccccccccc
Q 043408 231 LSHLYWLRISYC 242 (492)
Q Consensus 231 l~~L~~L~L~~c 242 (492)
+..++..++.+|
T Consensus 273 l~~l~~~~l~~C 284 (285)
T 1ozn_A 273 LKRLAANDLQGC 284 (285)
T ss_dssp GGGSCGGGSCCC
T ss_pred hhhcCHHHhccC
Confidence 344455455544
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=1.9e-23 Score=207.70 Aligned_cols=256 Identities=18% Similarity=0.096 Sum_probs=200.6
Q ss_pred ceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccC
Q 043408 2 LVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEH 79 (492)
Q Consensus 2 L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~ 79 (492)
+..++++.+.+.+.+ ..+..+++|++|+|++|.+....| .+..+++|++|+|++|..... ++ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-EE-ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-hh-hhhcCCCCEEECcC
Confidence 344556666666554 334567899999999998766555 389999999999999765443 33 88999999999999
Q ss_pred CCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCccc
Q 043408 80 CRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPN 159 (492)
Q Consensus 80 ~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~ 159 (492)
|. ++.++. .++|++|++++|.. ..++. ..+++|++|++++|...+..+..+..+++|++|++++|...+..+.
T Consensus 90 n~-l~~l~~---~~~L~~L~l~~n~l-~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 90 NY-VQELLV---GPSIETLHAANNNI-SRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp SE-EEEEEE---CTTCCEEECCSSCC-SEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred Cc-cccccC---CCCcCEEECCCCcc-CCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 86 665553 58999999999754 44433 3478999999999988887777888999999999999866655555
Q ss_pred cc-CCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhhcCccccc
Q 043408 160 EL-GNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYW 236 (492)
Q Consensus 160 ~l-~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~ 236 (492)
.+ +.+++|+.|++++|.++.++... .+++|+.|++++|. .+|..+..+++|+.|+|++|.++.+|..+..+++|+.
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~ 241 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCE
T ss_pred HHhhccCcCCEEECCCCcCccccccc-ccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCE
Confidence 55 47899999999999999886543 58999999999886 4777789999999999999999999999999999999
Q ss_pred ccccccccc-ccCCCC---Ccccceeecccccccc
Q 043408 237 LRISYCERL-KSLPEL---PCDLSDIEAHCCSSLE 267 (492)
Q Consensus 237 L~L~~c~~l-~~lp~l---~~sL~~L~~~~C~~L~ 267 (492)
|++++|+.. ..+|.. .+.|+.+++.++..++
T Consensus 242 L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp EECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred EEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 999998765 344443 2345555555544443
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=2e-21 Score=202.57 Aligned_cols=219 Identities=23% Similarity=0.274 Sum_probs=187.2
Q ss_pred CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408 1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE 78 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~ 78 (492)
+|++|+|++|+|+.++ ..+..+++|+.|+|++|.+....+. |.++++|++|+|++|......+..+..+++|++|+|+
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 5789999999999875 7789999999999999987665544 8999999999999976544444458889999999999
Q ss_pred CCCCCcccCCcc--CCCCCCEEEeeCCCCCcccCc-cccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCC
Q 043408 79 HCRSLTSLSTSI--HLESLKTLILSGCSNLMKLPS-SIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQ 155 (492)
Q Consensus 79 ~~~~l~~lp~~~--~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~ 155 (492)
+|. +..++... ++++|++|++++|+.++.++. .+.++++|++|+|++|...+ +| .+..+++|++|+|++|...+
T Consensus 156 ~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 156 NNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp SCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSE
T ss_pred CCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcc
Confidence 987 66666533 899999999999999988876 48999999999999987654 45 48889999999999987777
Q ss_pred CcccccCCccccccccccccccccc-ccccccCCCCcccccCCCc--CCc-cccCCCCCCcEEecCCCccc
Q 043408 156 RLPNELGNLEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESFK--ELP-ECLGQLSSLRILFLDKNNFE 222 (492)
Q Consensus 156 ~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~--~lp-~~l~~l~~L~~L~L~~n~l~ 222 (492)
..|..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|. .++ ..+..+++|+.|+|++|.+.
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 7788899999999999999999976 4568899999999999986 344 45688999999999999876
No 54
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=2.2e-22 Score=211.82 Aligned_cols=214 Identities=18% Similarity=0.078 Sum_probs=145.1
Q ss_pred CCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCccCCCCCCEEEe
Q 043408 22 LVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLIL 100 (492)
Q Consensus 22 l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L 100 (492)
+++|+.|+|++|.+....| .++.+++|++|+|++|......| ++.+++|++|+|++|. +..++. .++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~---~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELLV---GPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEEE---CTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCCC---CCCcCEEEC
Confidence 3477777777776655444 37777777777777765433333 6777777777777764 554443 367777777
Q ss_pred eCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccC-Ccccccccccccccccc
Q 043408 101 SGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELG-NLEALKELKAEGIAIRE 179 (492)
Q Consensus 101 ~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~-~l~~L~~L~l~~~~i~~ 179 (492)
++|.... ++. ..+++|+.|+|++|...+..|..++.+++|+.|+|++|...+..|..+. .+++|+.|++++|.+..
T Consensus 107 ~~N~l~~-~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISR-VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCC-EEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCC-CCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 7754333 222 2356777777777777666666777777777777777666555555554 67777777777777776
Q ss_pred cccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhhcCcccccccccccccc
Q 043408 180 VPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERL 245 (492)
Q Consensus 180 lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l 245 (492)
+|.. ..+++|+.|++++|. .+|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|+..
T Consensus 184 ~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 184 VKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred cccc-ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 6543 347777777777765 3556677777777777777777777777777777777777777654
No 55
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=5.1e-21 Score=206.65 Aligned_cols=125 Identities=22% Similarity=0.210 Sum_probs=77.7
Q ss_pred CCCCCCCEEeccCCCCCCCcc-cccCCccccccccccccccccc-ccccccCCCCcccccCCCcC----CccccCCCCCC
Q 043408 138 CKLKSLERLNLSGCSNLQRLP-NELGNLEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESFKE----LPECLGQLSSL 211 (492)
Q Consensus 138 ~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~----lp~~l~~l~~L 211 (492)
..+++|+.+++.++......+ ..+..+.+++.++++.|.+..+ +..+..+++|+.|+++++.. .|..+..+++|
T Consensus 417 ~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L 496 (635)
T 4g8a_A 417 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 496 (635)
T ss_dssp TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred cccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc
Confidence 345667777777665444333 3456667777777777776643 33455666777777776641 45566777777
Q ss_pred cEEecCCCccccc-chhhhcCccccccccccccccccCCCC----Ccccceeecccc
Q 043408 212 RILFLDKNNFERI-PESIICLSHLYWLRISYCERLKSLPEL----PCDLSDIEAHCC 263 (492)
Q Consensus 212 ~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~l----~~sL~~L~~~~C 263 (492)
+.|+|++|+++.+ |..+..+++|+.|+|++|+ ++.++.. .++|+.|+++++
T Consensus 497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N 552 (635)
T 4g8a_A 497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLN 552 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTS
T ss_pred CEEECCCCccCCcChHHHcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCC
Confidence 7777777777654 4566677777777777753 4444432 356666766654
No 56
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=208.98 Aligned_cols=255 Identities=21% Similarity=0.203 Sum_probs=184.0
Q ss_pred ceEEEccCC-Ccc-cccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408 2 LVSLEMPHS-SIK-QLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE 78 (492)
Q Consensus 2 L~~L~L~~s-~i~-~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~ 78 (492)
++.+++.++ .+. .++..+..+++|+.|++++|.+. .+|+ +..+ +|++|++++|... .+|. ..+++|+.|+++
T Consensus 259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~ 333 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFT 333 (570)
T ss_dssp EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEE
T ss_pred hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCc
Confidence 355666655 333 34566777888888888888765 4544 6666 8888888887544 5654 467888888888
Q ss_pred CCCCCcccCCccCCCCCCEEEeeCCCCCcc--cCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCC
Q 043408 79 HCRSLTSLSTSIHLESLKTLILSGCSNLMK--LPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQR 156 (492)
Q Consensus 79 ~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~--lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~ 156 (492)
+|......+. ..+++|++|++++|..... .+..+..+++|++|++++|...+ +|..+..+++|++|++++|...+.
T Consensus 334 ~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 334 SNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp SCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESC
T ss_pred CCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccc
Confidence 8775444443 5788888888888654322 25667888888888888876544 444478888888888888765554
Q ss_pred cc-cccCCcccccccccccccccc-cccccccCCCCcccccCCCc----CCccccCCCCCCcEEecCCCccccc-chhhh
Q 043408 157 LP-NELGNLEALKELKAEGIAIRE-VPSSIVCLKNLGRLSFESFK----ELPECLGQLSSLRILFLDKNNFERI-PESII 229 (492)
Q Consensus 157 lp-~~l~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~----~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~ 229 (492)
.+ ..++.+++|+.|++++|.+.. .|..+..+++|+.|++++|. .+|..+..+++|+.|++++|.++.+ |..+.
T Consensus 412 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 491 (570)
T 2z63_A 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491 (570)
T ss_dssp TTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred cchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh
Confidence 44 457788888888888888774 45567788888888888875 3677888888888888888888765 67788
Q ss_pred cCccccccccccccccccCCC-C---Ccccceeeccccc
Q 043408 230 CLSHLYWLRISYCERLKSLPE-L---PCDLSDIEAHCCS 264 (492)
Q Consensus 230 ~l~~L~~L~L~~c~~l~~lp~-l---~~sL~~L~~~~C~ 264 (492)
.+++|+.|++++|+ ++.+|. . .++|+.|++.+++
T Consensus 492 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 492 SLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCc
Confidence 88888888888874 444442 2 3677788877754
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=3.7e-21 Score=199.85 Aligned_cols=218 Identities=24% Similarity=0.293 Sum_probs=185.8
Q ss_pred CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCcccc-ccccCCcCCcEEec
Q 043408 1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETH-SSIQYLNKLIVLNL 77 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~-~si~~L~~L~~L~L 77 (492)
+++.|+|++|+|+.++ ..+..+++|++|+|++|.+....+. |.++++|++|+|++|.. ..++ ..+..+++|++|+|
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL-TTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC-SSCCTTTSCSCSSCCEEEC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC-CeeCHhHhhccccCceeeC
Confidence 4789999999999887 7789999999999999987654443 89999999999999754 4555 46889999999999
Q ss_pred cCCCCCcccCCc-c-CCCCCCEEEeeCCCCCcccCc-cccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCC
Q 043408 78 EHCRSLTSLSTS-I-HLESLKTLILSGCSNLMKLPS-SIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNL 154 (492)
Q Consensus 78 ~~~~~l~~lp~~-~-~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l 154 (492)
++|. +..++.. + ++++|++|++++|+.+..++. .+.++++|++|+|++|... .+| .+..+++|++|+|++|...
T Consensus 144 ~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 144 RNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCC
T ss_pred CCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccC
Confidence 9987 6666653 3 899999999999888888876 5899999999999998654 566 4788999999999998766
Q ss_pred CCcccccCCcccccccccccccccccc-cccccCCCCcccccCCCc--CCc-cccCCCCCCcEEecCCCccc
Q 043408 155 QRLPNELGNLEALKELKAEGIAIREVP-SSIVCLKNLGRLSFESFK--ELP-ECLGQLSSLRILFLDKNNFE 222 (492)
Q Consensus 155 ~~lp~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~--~lp-~~l~~l~~L~~L~L~~n~l~ 222 (492)
+..|..+..+++|+.|++++|.+..++ ..+..+++|+.|++++|. .++ ..+..+++|+.|+|++|.+.
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 666888999999999999999999774 467899999999999986 344 45688999999999999976
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=1.1e-23 Score=208.99 Aligned_cols=235 Identities=17% Similarity=0.131 Sum_probs=155.1
Q ss_pred cCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCccc-Ccccccccc-------CCcCCcEEeccCCCCCcccCCc-
Q 043408 20 QRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTS-LLETHSSIQ-------YLNKLIVLNLEHCRSLTSLSTS- 89 (492)
Q Consensus 20 ~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~-l~~~~~si~-------~L~~L~~L~L~~~~~l~~lp~~- 89 (492)
+..++|+.|++++|.+ .+|. +.. .|++|+|++|.. ...++..+. .+++|++|++++|.....+|..
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 4466777788888776 4443 332 277777777554 234555444 5778888888877644455554
Q ss_pred --cCCCCCCEEEeeCCCCCcccCccccCC-----CCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCC--cccc
Q 043408 90 --IHLESLKTLILSGCSNLMKLPSSIERL-----SSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQR--LPNE 160 (492)
Q Consensus 90 --~~l~~L~~L~L~~c~~l~~lp~~i~~l-----~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~--lp~~ 160 (492)
..+++|++|++++|... .+|..++.+ ++|++|++++|...+..|..++++++|++|++++|...+. ++..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWA-TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCS-SSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCc-chhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 26778888888876533 346666665 7888888888777666667777888888888887765543 2333
Q ss_pred c--CCccccccccccccccccccc----ccccCCCCcccccCCCcC---Cc-cccCCCCCCcEEecCCCcccccchhhhc
Q 043408 161 L--GNLEALKELKAEGIAIREVPS----SIVCLKNLGRLSFESFKE---LP-ECLGQLSSLRILFLDKNNFERIPESIIC 230 (492)
Q Consensus 161 l--~~l~~L~~L~l~~~~i~~lp~----~~~~l~~L~~L~l~~~~~---lp-~~l~~l~~L~~L~L~~n~l~~lp~~l~~ 230 (492)
+ +.+++|+.|++++|.+..++. .+..+++|+.|+++++.- .| ..+..+++|+.|+|++|.++.+|..+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~- 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP- 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-
Confidence 3 777788888888887774432 234667888888877752 22 345567788888888888887777665
Q ss_pred CccccccccccccccccCCCC--Ccccceeeccc
Q 043408 231 LSHLYWLRISYCERLKSLPEL--PCDLSDIEAHC 262 (492)
Q Consensus 231 l~~L~~L~L~~c~~l~~lp~l--~~sL~~L~~~~ 262 (492)
++|+.|++++|+ ++.+|.+ .++|+.|++.+
T Consensus 274 -~~L~~L~Ls~N~-l~~~p~~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 274 -AKLSVLDLSYNR-LDRNPSPDELPQVGNLSLKG 305 (312)
T ss_dssp -SEEEEEECCSSC-CCSCCCTTTSCEEEEEECTT
T ss_pred -CCceEEECCCCC-CCCChhHhhCCCCCEEeccC
Confidence 788888888864 5555552 24555555544
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=4.4e-20 Score=199.14 Aligned_cols=236 Identities=24% Similarity=0.267 Sum_probs=188.2
Q ss_pred CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408 1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC 80 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~ 80 (492)
++++|++++++++.+|..+. ++|+.|+|++|.+. .+|. .+++|++|+|++|. +..+|. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~--~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA--LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCS-CCCC--CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCC-CCCC--cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcCC
Confidence 47899999999999998776 89999999999754 5666 67999999999975 667776 6799999999997
Q ss_pred CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc
Q 043408 81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE 160 (492)
Q Consensus 81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~ 160 (492)
. +..+|. .+++|+.|++++| .+..+|.. +++|++|++++|... .+|. .+.+|+.|++++|. +..+|
T Consensus 112 ~-l~~l~~--~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~-l~~l~-- 177 (622)
T 3g06_A 112 P-LTHLPA--LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQ-LTSLP-- 177 (622)
T ss_dssp C-CCCCCC--CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC-CSCCC--
T ss_pred c-CCCCCC--CCCCcCEEECCCC-CCCcCCCC---CCCCCEEECcCCcCC-CcCC---ccCCCCEEECCCCC-CCCCc--
Confidence 6 777776 6889999999996 46667764 489999999998654 4554 35678999999864 44566
Q ss_pred cCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhhcCccccccc
Q 043408 161 LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLR 238 (492)
Q Consensus 161 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 238 (492)
..+++|+.|++++|.+..+|.. +++|+.|++.+|. .+|. .+++|+.|+|++|.++.+| ..+++|+.|+
T Consensus 178 -~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~ 247 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTSLP---VLPSELKELM 247 (622)
T ss_dssp -CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEE
T ss_pred -ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEE
Confidence 4568899999999999888764 4678888888775 3443 3578999999999988888 4568899999
Q ss_pred cccccccccCCCCCcccceeecccccccccccc
Q 043408 239 ISYCERLKSLPELPCDLSDIEAHCCSSLEALSG 271 (492)
Q Consensus 239 L~~c~~l~~lp~l~~sL~~L~~~~C~~L~~l~~ 271 (492)
+++| .++.+|..+++|+.|++.+| .++.++.
T Consensus 248 Ls~N-~L~~lp~~~~~L~~L~Ls~N-~L~~lp~ 278 (622)
T 3g06_A 248 VSGN-RLTSLPMLPSGLLSLSVYRN-QLTRLPE 278 (622)
T ss_dssp CCSS-CCSCCCCCCTTCCEEECCSS-CCCSCCG
T ss_pred CCCC-CCCcCCcccccCcEEeCCCC-CCCcCCH
Confidence 9987 57788888888999998887 4666654
No 60
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=1.3e-21 Score=204.22 Aligned_cols=240 Identities=21% Similarity=0.213 Sum_probs=120.9
Q ss_pred CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCc-------------cEEEeeCcccCccccccc
Q 043408 1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNL-------------ESLTFRGCTSLLETHSSI 66 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL-------------~~L~L~~c~~l~~~~~si 66 (492)
.|++|+++++++..+|..++.+++|++|++++|.+...+|. ++.+.+| ++|++++|. +..+|..
T Consensus 12 ~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~~- 89 (454)
T 1jl5_A 12 FLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPEL- 89 (454)
T ss_dssp ----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCSC-
T ss_pred cchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCCC-
Confidence 47889999999999999999999999999988887666664 7777664 777877764 4444441
Q ss_pred cCCcCCcEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEE
Q 043408 67 QYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERL 146 (492)
Q Consensus 67 ~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L 146 (492)
.++|++|++++|. ++.+|.. +++|++|++++|. +..++.. .++|++|++++|...+ +| .++++++|++|
T Consensus 90 --~~~L~~L~l~~n~-l~~lp~~--~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L 158 (454)
T 1jl5_A 90 --PPHLESLVASCNS-LTELPEL--PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKII 158 (454)
T ss_dssp --CTTCSEEECCSSC-CSSCCCC--CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEE
T ss_pred --cCCCCEEEccCCc-CCccccc--cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEE
Confidence 3567777777654 4445542 3566666666642 3333221 1456666666654443 55 35666666666
Q ss_pred eccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCccccc
Q 043408 147 NLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERI 224 (492)
Q Consensus 147 ~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~l 224 (492)
++++|.. ..+|..+ .+|+.|++++|.++.+| .+..+++|+.|++++|. .+|.. .++|+.|++++|.++.+
T Consensus 159 ~l~~N~l-~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~~l 230 (454)
T 1jl5_A 159 DVDNNSL-KKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILEEL 230 (454)
T ss_dssp ECCSSCC-SCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSSC
T ss_pred ECCCCcC-cccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCCcc
Confidence 6666432 2344332 35566666666665555 35555666666555543 22221 23555555555555555
Q ss_pred chhhhcCccccccccccccccccCCCCCcccceeecccc
Q 043408 225 PESIICLSHLYWLRISYCERLKSLPELPCDLSDIEAHCC 263 (492)
Q Consensus 225 p~~l~~l~~L~~L~L~~c~~l~~lp~l~~sL~~L~~~~C 263 (492)
|. +..+++|+.|++++| .++.+|..+++|+.|++.++
T Consensus 231 p~-~~~l~~L~~L~l~~N-~l~~l~~~~~~L~~L~l~~N 267 (454)
T 1jl5_A 231 PE-LQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDN 267 (454)
T ss_dssp CC-CTTCTTCCEEECCSS-CCSSCCSCCTTCCEEECCSS
T ss_pred cc-cCCCCCCCEEECCCC-cCCcccccccccCEEECCCC
Confidence 52 555555555555554 23445555555555555544
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=6.6e-22 Score=208.25 Aligned_cols=235 Identities=15% Similarity=0.108 Sum_probs=196.0
Q ss_pred CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccC
Q 043408 1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEH 79 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~ 79 (492)
+|++|+|++|++..++ ..+..+++|++|+|++|.+....| +..+++|++|+|++|. +..++ ..++|+.|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~----~~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEE----ECTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCC----CCCCcCEEECcC
Confidence 4889999999999876 688999999999999998655444 8999999999999974 44444 348999999999
Q ss_pred CCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccC-CCCCCCEEeccCCCCCCCcc
Q 043408 80 CRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKIC-KLKSLERLNLSGCSNLQRLP 158 (492)
Q Consensus 80 ~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~-~l~~L~~L~Ls~c~~l~~lp 158 (492)
|. +..++. ..+++|+.|++++|......|..++.+++|++|+|++|...+..|..+. .+++|+.|+|++|... .+|
T Consensus 109 N~-l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~-~~~ 185 (487)
T 3oja_A 109 NN-ISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK 185 (487)
T ss_dssp SC-CCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEE
T ss_pred Cc-CCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc-ccc
Confidence 87 444443 2578999999999876666677899999999999999988887888776 7999999999997644 444
Q ss_pred cccCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCccc--ccchhhhcCccc
Q 043408 159 NELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFE--RIPESIICLSHL 234 (492)
Q Consensus 159 ~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L 234 (492)
. ...+++|+.|++++|.+..+|..+..+++|+.|++++|. .+|..+..+++|+.|++++|.+. .+|..+..++.|
T Consensus 186 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L 264 (487)
T 3oja_A 186 G-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (487)
T ss_dssp C-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred c-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence 3 446899999999999999999889999999999999976 47888999999999999999987 788888999999
Q ss_pred ccccccccccc
Q 043408 235 YWLRISYCERL 245 (492)
Q Consensus 235 ~~L~L~~c~~l 245 (492)
+.|+++.+..+
T Consensus 265 ~~l~~~~~~~~ 275 (487)
T 3oja_A 265 QTVAKQTVKKL 275 (487)
T ss_dssp HHHHHHHHHHH
T ss_pred cEEeccccccc
Confidence 98888765443
No 62
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.85 E-value=4.3e-20 Score=192.66 Aligned_cols=272 Identities=24% Similarity=0.248 Sum_probs=167.8
Q ss_pred CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408 1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC 80 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~ 80 (492)
+|++|++++|+++.++.. +++|++|++++|.+. .++.+ .++|++|++++|.. ..+| .++.+++|++|++++|
T Consensus 92 ~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~-~l~~~--~~~L~~L~L~~n~l-~~lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 92 HLESLVASCNSLTELPEL---PQSLKSLLVDNNNLK-ALSDL--PPLLEYLGVSNNQL-EKLP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp TCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-CCCSC--CTTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSS
T ss_pred CCCEEEccCCcCCccccc---cCCCcEEECCCCccC-cccCC--CCCCCEEECcCCCC-CCCc-ccCCCCCCCEEECCCC
Confidence 366777777777776643 367778888777543 33332 26788888887643 3466 5777888888888877
Q ss_pred CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc
Q 043408 81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE 160 (492)
Q Consensus 81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~ 160 (492)
. ++.+|.. ..+|++|++++|. +..+| .++++++|++|++++|...+ +|.. .++|++|++++|.. ..+|.
T Consensus 164 ~-l~~lp~~--~~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l-~~lp~- 232 (454)
T 1jl5_A 164 S-LKKLPDL--PPSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNIL-EELPE- 232 (454)
T ss_dssp C-CSCCCCC--CTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCC-SSCCC-
T ss_pred c-CcccCCC--cccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcC-Ccccc-
Confidence 5 5556653 3578888888753 44465 57777888888887776543 4432 24677777777643 36663
Q ss_pred cCCcccccccccccccccccccccccCCCCcccccCCCc--CCcccc-----------------CCCCCCcEEecCCCcc
Q 043408 161 LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECL-----------------GQLSSLRILFLDKNNF 221 (492)
Q Consensus 161 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l-----------------~~l~~L~~L~L~~n~l 221 (492)
++.+++|+.|++++|.++.+|.. +++|+.|++++|. .+|... ...++|+.|++++|.+
T Consensus 233 ~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l 309 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 309 (454)
T ss_dssp CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCC
T ss_pred cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcC
Confidence 66777777777777777666643 2556666665553 233211 0113444455555444
Q ss_pred cccchhhhcCccccccccccccccccCCCCCcccceeecccccccccccccchhhccCCCCCceeeccccCCCCCceeCC
Q 043408 222 ERIPESIICLSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQCFDFQHCEVPRGMICFP 301 (492)
Q Consensus 222 ~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~sL~~L~~~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~c~l~~~~~~~p 301 (492)
+.++. -.++|+.|++++|. +..+|..+++|+.|++.+| .++.++.. ......+.++++++.. +|
T Consensus 310 ~~i~~---~~~~L~~L~Ls~N~-l~~lp~~~~~L~~L~L~~N-~l~~lp~~-------l~~L~~L~L~~N~l~~----l~ 373 (454)
T 1jl5_A 310 RSLCD---LPPSLEELNVSNNK-LIELPALPPRLERLIASFN-HLAEVPEL-------PQNLKQLHVEYNPLRE----FP 373 (454)
T ss_dssp SEECC---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSCCCCC-------CTTCCEEECCSSCCSS----CC
T ss_pred CcccC---CcCcCCEEECCCCc-cccccccCCcCCEEECCCC-ccccccch-------hhhccEEECCCCCCCc----CC
Confidence 43331 11578889998864 6678888889999999887 46666541 0122356666654332 22
Q ss_pred CCCCCCceecc
Q 043408 302 GSELPEWFMFQ 312 (492)
Q Consensus 302 g~~iP~W~~~~ 312 (492)
.+|.|+.+-
T Consensus 374 --~ip~~l~~L 382 (454)
T 1jl5_A 374 --DIPESVEDL 382 (454)
T ss_dssp --CCCTTCCEE
T ss_pred --CChHHHHhh
Confidence 478887654
No 63
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=3.8e-20 Score=193.22 Aligned_cols=222 Identities=20% Similarity=0.204 Sum_probs=185.4
Q ss_pred cccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCccCCCCCCE
Q 043408 18 GVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKT 97 (492)
Q Consensus 18 ~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~ 97 (492)
.+..+++|++|++++|.+. .+|.+..+++|++|+|++|. +..++ ++.+++|++|++++|. ++.++ ..++++|++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~-~~~~l~~l~~L~~L~Ls~n~-l~~~~--~~~l~~L~~L~Ls~N~-l~~~~-~~~l~~L~~ 110 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSIT-DMTGIEKLTGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSNK-LTNLD-VTPLTKLTY 110 (457)
T ss_dssp EHHHHTTCCEEECCSSCCC-CCTTGGGCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSC-CSCCC-CTTCTTCCE
T ss_pred ChhHcCCCCEEEccCCCcc-cChhhcccCCCCEEEccCCc-CCeEc--cccCCCCCEEECcCCC-Cceee-cCCCCcCCE
Confidence 4567999999999999765 46789999999999999975 44554 8899999999999987 66665 348999999
Q ss_pred EEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccc
Q 043408 98 LILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAI 177 (492)
Q Consensus 98 L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i 177 (492)
|++++|. +..++ ++.+++|++|++++|...+ ++ ++.+++|++|++++|...+.+ .++.+++|+.|++++|.+
T Consensus 111 L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 111 LNCDTNK-LTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp EECCSSC-CSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC
T ss_pred EECCCCc-CCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc
Confidence 9999974 55565 8999999999999988766 43 889999999999999888777 478899999999999999
Q ss_pred cccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccchhhhcCccccccccccccccccCC-CCCcccc
Q 043408 178 REVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLP-ELPCDLS 256 (492)
Q Consensus 178 ~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp-~l~~sL~ 256 (492)
+.+| +..+++|+.|+++++.--...++.+++|+.|++++|+++.+| +..+++|+.|++++|+ ++.+| ...++|+
T Consensus 183 ~~l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~-l~~~~~~~l~~L~ 257 (457)
T 3bz5_A 183 TELD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNP-LTELDVSTLSKLT 257 (457)
T ss_dssp CCCC--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCCCTTCTTCC
T ss_pred ceec--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCc-CCCcCHHHCCCCC
Confidence 9987 889999999999988732225889999999999999999988 8899999999999985 44444 2334444
Q ss_pred ee
Q 043408 257 DI 258 (492)
Q Consensus 257 ~L 258 (492)
.|
T Consensus 258 ~L 259 (457)
T 3bz5_A 258 TL 259 (457)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=3.5e-21 Score=190.84 Aligned_cols=235 Identities=19% Similarity=0.174 Sum_probs=159.3
Q ss_pred ceEEEccCCCcccccccccCCCCCcEEEccCCCCC-CCCCC-CC-------CCCCccEEEeeCcccCccccccc--cCCc
Q 043408 2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHL-TKIPD-LS-------LATNLESLTFRGCTSLLETHSSI--QYLN 70 (492)
Q Consensus 2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l-~~~p~-l~-------~~~nL~~L~L~~c~~l~~~~~si--~~L~ 70 (492)
|++|++++|++ .+|..+... |+.|+|++|.+. ..+|. +. ++++|++|+|++|.....+|..+ +.++
T Consensus 45 L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 121 (312)
T 1wwl_A 45 LEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121 (312)
T ss_dssp CTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred ceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence 45556666777 666554443 677777776652 22333 22 56777777777776666667665 6777
Q ss_pred CCcEEeccCCCCCcccCCcc-CC-----CCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCc--ccccc--CCC
Q 043408 71 KLIVLNLEHCRSLTSLSTSI-HL-----ESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEG--LPSKI--CKL 140 (492)
Q Consensus 71 ~L~~L~L~~~~~l~~lp~~~-~l-----~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~--lp~~i--~~l 140 (492)
+|++|++++|. +..+|..+ .+ ++|++|++++|......|..++++++|++|++++|...+. +|..+ ..+
T Consensus 122 ~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 122 DLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred CccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 77888877765 44445433 33 7788888877655444446777788888888887776554 33344 677
Q ss_pred CCCCEEeccCCCCCC--Ccc-cccCCcccccccccccccccccc--cccccCCCCcccccCCCc--CCccccCCCCCCcE
Q 043408 141 KSLERLNLSGCSNLQ--RLP-NELGNLEALKELKAEGIAIREVP--SSIVCLKNLGRLSFESFK--ELPECLGQLSSLRI 213 (492)
Q Consensus 141 ~~L~~L~Ls~c~~l~--~lp-~~l~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~ 213 (492)
++|++|++++|...+ .++ ..+..+++|+.|++++|.+...+ ..+..+++|+.|++++|. .+|..+. ++|+.
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~ 278 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSV 278 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEE
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceE
Confidence 788888887764431 222 22346677888888888777644 344556778888887765 4666665 88999
Q ss_pred EecCCCcccccchhhhcCcccccccccccc
Q 043408 214 LFLDKNNFERIPESIICLSHLYWLRISYCE 243 (492)
Q Consensus 214 L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~ 243 (492)
|+|++|+++.+|. +..+++|+.|++++|+
T Consensus 279 L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 279 LDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp EECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred EECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 9999999998887 8899999999999975
No 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=9.5e-20 Score=178.76 Aligned_cols=200 Identities=23% Similarity=0.236 Sum_probs=155.9
Q ss_pred ccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCccCCCCCCE
Q 043408 19 VQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKT 97 (492)
Q Consensus 19 ~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~ 97 (492)
+..+++|+.++++++.+. .+| .+ .++|++|+|++|......+..+..+++|++|++++|. +..++....+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCE
T ss_pred ccccCCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCE
Confidence 456788899999887654 444 34 3688999999877665566778889999999999876 666666568889999
Q ss_pred EEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccc
Q 043408 98 LILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAI 177 (492)
Q Consensus 98 L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i 177 (492)
|++++| .+..+|..+..+++|++|++++|...+..+..+..+++|++|++++|......+..+..+++|+.|++++|++
T Consensus 82 L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 82 LDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 999985 5667888888899999999999877766667788889999999998765544445577888888898888888
Q ss_pred cccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccchhhhcCcccccccccccc
Q 043408 178 REVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCE 243 (492)
Q Consensus 178 ~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~ 243 (492)
+.+|.. .+..+++|+.|+|++|.++.+|..+..+.+|+.|++++|+
T Consensus 161 ~~l~~~--------------------~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 161 TELPAG--------------------LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp SCCCTT--------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CccCHH--------------------HhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 877652 3456777888888888888888877777788888888765
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.83 E-value=1e-19 Score=176.79 Aligned_cols=216 Identities=19% Similarity=0.162 Sum_probs=133.7
Q ss_pred EEccCCCcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCC
Q 043408 5 LEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSL 83 (492)
Q Consensus 5 L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l 83 (492)
++..+.++..+|..+. ++|++|+|++|.+....+ .+.++++|++|+|++|......+..+..+++|++|++++|. +
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l 88 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-I 88 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-C
T ss_pred EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-c
Confidence 4455566666776554 467888888877654444 47777788888887764443334456777777777777765 3
Q ss_pred cccC-Ccc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCC-ccccccCCCCCCCEEeccCCCCCCCcccc
Q 043408 84 TSLS-TSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLE-GLPSKICKLKSLERLNLSGCSNLQRLPNE 160 (492)
Q Consensus 84 ~~lp-~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~ 160 (492)
..++ ..+ ++++|++|++++|......+..++.+++|++|++++|.... .+|..+..+++|++|++++|...+..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 3333 323 66677777776654333333346666666666666665544 24666666666666666665443333344
Q ss_pred cCCccccc----ccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccchh-hhcCcccc
Q 043408 161 LGNLEALK----ELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPES-IICLSHLY 235 (492)
Q Consensus 161 l~~l~~L~----~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~ 235 (492)
+..+.+|+ .|++++|.+..++. ......+|+.|++++|.++.+|.. +..+++|+
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~~~~~---------------------~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 227 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQP---------------------GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQ 227 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCCEECT---------------------TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCC
T ss_pred hhhhhhccccceeeecCCCcccccCc---------------------cccCCCcccEEECCCCceeecCHhHhccccccc
Confidence 44444444 45555555554443 333344788888888888877754 57788888
Q ss_pred ccccccccc
Q 043408 236 WLRISYCER 244 (492)
Q Consensus 236 ~L~L~~c~~ 244 (492)
.|++++|+.
T Consensus 228 ~L~l~~N~~ 236 (276)
T 2z62_A 228 KIWLHTNPW 236 (276)
T ss_dssp EEECCSSCB
T ss_pred EEEccCCcc
Confidence 888888753
No 67
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=3.6e-21 Score=192.16 Aligned_cols=244 Identities=20% Similarity=0.227 Sum_probs=163.3
Q ss_pred ceEEEccCCCcccccccccCC--CCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCcc-ccccccCCcCCcEEecc
Q 043408 2 LVSLEMPHSSIKQLWKGVQRL--VNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLE-THSSIQYLNKLIVLNLE 78 (492)
Q Consensus 2 L~~L~L~~s~i~~l~~~~~~l--~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~-~~~si~~L~~L~~L~L~ 78 (492)
++.|+++++++. +..+..+ ++++.|++++|.+....+.+..+++|++|+|++|..... ++..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 457778777765 3444555 788888888887777677777788888888888764434 66677788888888888
Q ss_pred CCCCCcccCCcc-CCCCCCEEEeeCCCCCc--ccCccccCCCCCcEEEcccC-CCCCc-cccccCCCC-CCCEEeccCCC
Q 043408 79 HCRSLTSLSTSI-HLESLKTLILSGCSNLM--KLPSSIERLSSLILLNLRNC-SRLEG-LPSKICKLK-SLERLNLSGCS 152 (492)
Q Consensus 79 ~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~--~lp~~i~~l~~L~~L~L~~~-~~l~~-lp~~i~~l~-~L~~L~Ls~c~ 152 (492)
+|......+..+ .+++|++|++++|..+. .++..+.++++|++|++++| ..... ++..+..++ +|++|++++|.
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 876333333333 67888888888875555 35666778888888888888 44332 566677778 88888888874
Q ss_pred -CC--CCcccccCCccccccccccccc-cc-ccccccccCCCCcccccCCCcCCcc----ccCCCCCCcEEecCCCcccc
Q 043408 153 -NL--QRLPNELGNLEALKELKAEGIA-IR-EVPSSIVCLKNLGRLSFESFKELPE----CLGQLSSLRILFLDKNNFER 223 (492)
Q Consensus 153 -~l--~~lp~~l~~l~~L~~L~l~~~~-i~-~lp~~~~~l~~L~~L~l~~~~~lp~----~l~~l~~L~~L~L~~n~l~~ 223 (492)
.. ..++..++.+++|+.|++++|. ++ ..+..+..+++|+.|++++|..+.+ .+..+++|+.|++++| ++.
T Consensus 207 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~ 285 (336)
T 2ast_B 207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD 285 (336)
T ss_dssp GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred ccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH
Confidence 22 3456666777788888888887 43 5555677777777777777754332 3666777777777777 321
Q ss_pred cchhhhcC-ccccccccccccccccCCC
Q 043408 224 IPESIICL-SHLYWLRISYCERLKSLPE 250 (492)
Q Consensus 224 lp~~l~~l-~~L~~L~L~~c~~l~~lp~ 250 (492)
..+..+ ..|+.|++++|..-+..|.
T Consensus 286 --~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 286 --GTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp --TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred --HHHHHHHhhCcceEEecccCccccCC
Confidence 122222 2355666665544334443
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.82 E-value=5.7e-19 Score=171.17 Aligned_cols=196 Identities=20% Similarity=0.240 Sum_probs=96.2
Q ss_pred eEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCcccccc-ccCCcCCcEEeccCC
Q 043408 3 VSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSS-IQYLNKLIVLNLEHC 80 (492)
Q Consensus 3 ~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~s-i~~L~~L~~L~L~~~ 80 (492)
+.+++++++++.+|..+. ++|+.|+|++|.+....+ .+.++++|++|+|++|. +..++.. +..+++|++|++++|
T Consensus 19 ~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 19 NSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSS
T ss_pred CEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCC
Confidence 445555555555554433 455555555555433332 25555555555555543 2233332 244555555555554
Q ss_pred CCCcccCCcc--CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcc
Q 043408 81 RSLTSLSTSI--HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLP 158 (492)
Q Consensus 81 ~~l~~lp~~~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp 158 (492)
. +..++... .+++|++|++++|......+..+..+++|++|+|++|......+..+..+++|++|++++|......+
T Consensus 96 ~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 96 K-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp C-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred c-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 4 33333221 45555555555533222222334455555555555544333222334445555555555443322222
Q ss_pred cccCCcccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCccc
Q 043408 159 NELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFE 222 (492)
Q Consensus 159 ~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~ 222 (492)
..+..+++|+.|++++|.++.+|. ..+..+++|+.|+|++|.+.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~--------------------~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPE--------------------GAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCT--------------------TTTTTCTTCCEEECCSSCBC
T ss_pred hHhccCCCcCEEECCCCcCCcCCH--------------------HHhccccCCCEEEecCCCee
Confidence 234444445555554444443332 24667888999999999875
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=4.4e-19 Score=191.35 Aligned_cols=229 Identities=24% Similarity=0.245 Sum_probs=177.9
Q ss_pred CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408 1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC 80 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~ 80 (492)
+|++|+|++|+|+.++. .+++|++|+|++|.+. .+|. .+++|++|+|++| .+..+|. .+.+|+.|++++|
T Consensus 62 ~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~--~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~N 131 (622)
T 3g06_A 62 HITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT-SLPV--LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIFGN 131 (622)
T ss_dssp TCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCS-CCCC--CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECCSS
T ss_pred CCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCC-cCCC--CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECCCC
Confidence 58999999999999987 5789999999999854 5666 7899999999986 4555665 5789999999998
Q ss_pred CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc
Q 043408 81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE 160 (492)
Q Consensus 81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~ 160 (492)
. +..+|.. +++|++|++++| .+..+|. .+.+|+.|++++|... .+| ..+++|+.|++++|. +..+|..
T Consensus 132 ~-l~~lp~~--l~~L~~L~Ls~N-~l~~l~~---~~~~L~~L~L~~N~l~-~l~---~~~~~L~~L~Ls~N~-l~~l~~~ 199 (622)
T 3g06_A 132 Q-LTSLPVL--PPGLQELSVSDN-QLASLPA---LPSELCKLWAYNNQLT-SLP---MLPSGLQELSVSDNQ-LASLPTL 199 (622)
T ss_dssp C-CSCCCCC--CTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSC-CSCCCCC
T ss_pred C-CCcCCCC--CCCCCEEECcCC-cCCCcCC---ccCCCCEEECCCCCCC-CCc---ccCCCCcEEECCCCC-CCCCCCc
Confidence 6 7777763 589999999997 4555664 3468889999987654 465 456889999999865 4456653
Q ss_pred cCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhhcCccccccc
Q 043408 161 LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLR 238 (492)
Q Consensus 161 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 238 (492)
+++|+.|++++|.+..+|.. +++|+.|++++|. .+| ..+++|+.|+|++|.++.+|. .+++|+.|+
T Consensus 200 ---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~ 267 (622)
T 3g06_A 200 ---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLS 267 (622)
T ss_dssp ---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEE
T ss_pred ---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEe
Confidence 46788888888888888753 4778888888775 345 556888899999988888886 667888888
Q ss_pred cccccccccCCCC---Ccccceeeccccc
Q 043408 239 ISYCERLKSLPEL---PCDLSDIEAHCCS 264 (492)
Q Consensus 239 L~~c~~l~~lp~l---~~sL~~L~~~~C~ 264 (492)
+++| .+..+|.. .++|+.|++.+++
T Consensus 268 Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 268 VYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 8887 45677753 3567778887765
No 70
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.81 E-value=1.5e-19 Score=175.60 Aligned_cols=220 Identities=19% Similarity=0.239 Sum_probs=142.7
Q ss_pred ccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCccc
Q 043408 7 MPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSL 86 (492)
Q Consensus 7 L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~l 86 (492)
+..+.+..+ .....+++|+.|++++|.+ +.++.+..+++|++|+|++|.. ..+ +.+..+++|++|++++|. +..+
T Consensus 26 l~~~~~~~~-~~~~~l~~L~~L~l~~~~i-~~~~~l~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~L~~n~-l~~~ 100 (272)
T 3rfs_A 26 LKKKSVTDA-VTQNELNSIDQIIANNSDI-KSVQGIQYLPNVRYLALGGNKL-HDI-SALKELTNLTYLILTGNQ-LQSL 100 (272)
T ss_dssp HTCSCTTSE-ECHHHHTTCCEEECTTSCC-CCCTTGGGCTTCCEEECTTSCC-CCC-GGGTTCTTCCEEECTTSC-CCCC
T ss_pred hcCcccccc-cccccccceeeeeeCCCCc-ccccccccCCCCcEEECCCCCC-CCc-hhhcCCCCCCEEECCCCc-cCcc
Confidence 334444433 2345577888888887763 4566677788888888887653 333 366777778888887765 4444
Q ss_pred CCcc--CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCc
Q 043408 87 STSI--HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNL 164 (492)
Q Consensus 87 p~~~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l 164 (492)
+... ++++|++|++++|......+..++.+++|++|++++|...+..+..+..+++|++|++++|...+..+..++.+
T Consensus 101 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 180 (272)
T 3rfs_A 101 PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL 180 (272)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCC
Confidence 4422 67777777777755433333446777777777777776554444455667777777777765444334445666
Q ss_pred ccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccchhhhcCccccccccccccc
Q 043408 165 EALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCER 244 (492)
Q Consensus 165 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~ 244 (492)
++|+.|++++|.+..++. ..+..+++|+.|++++|.+. ..+++|+.|++..|..
T Consensus 181 ~~L~~L~L~~N~l~~~~~--------------------~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 181 TQLKDLRLYQNQLKSVPD--------------------GVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKH 234 (272)
T ss_dssp TTCCEEECCSSCCSCCCT--------------------TTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHT
T ss_pred ccCCEEECCCCcCCccCH--------------------HHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhC
Confidence 777777777776665443 34567788888888888765 2355788888888887
Q ss_pred cccCCCCCcccce
Q 043408 245 LKSLPELPCDLSD 257 (492)
Q Consensus 245 l~~lp~l~~sL~~ 257 (492)
.+.+|....++..
T Consensus 235 ~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 235 SGVVRNSAGSVAP 247 (272)
T ss_dssp GGGBBCTTSCBCG
T ss_pred CCcccCcccccCC
Confidence 7788876555544
No 71
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=3.3e-19 Score=173.08 Aligned_cols=202 Identities=22% Similarity=0.183 Sum_probs=163.3
Q ss_pred CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408 1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC 80 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~ 80 (492)
+|++|++.++.++.++ ++..+++|++|+|++|.+. .++.+..+++|++|+|++|......+..++.+++|++|++++|
T Consensus 42 ~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 119 (272)
T 3rfs_A 42 SIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLH-DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119 (272)
T ss_dssp TCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCC-CCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred ceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCC-CchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC
Confidence 4789999999999875 5888999999999999864 4678999999999999998655444455789999999999998
Q ss_pred CCCcccCCc-c-CCCCCCEEEeeCCCCCcccC-ccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCc
Q 043408 81 RSLTSLSTS-I-HLESLKTLILSGCSNLMKLP-SSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRL 157 (492)
Q Consensus 81 ~~l~~lp~~-~-~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l 157 (492)
. +..++.. + .+++|++|++++|. +..++ ..++.+++|++|++++|...+..+..+..+++|++|++++|...+..
T Consensus 120 ~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 120 Q-LQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred c-CCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence 7 5566553 3 89999999999975 44554 45789999999999999877666666789999999999998777666
Q ss_pred ccccCCcccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCccc-ccchhhhcCcc
Q 043408 158 PNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFE-RIPESIICLSH 233 (492)
Q Consensus 158 p~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~ 233 (492)
+..++.+++|+.|++++|.+. +.+++|+.|+++.|.++ .+|.+++.+..
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~---------------------------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 198 DGVFDRLTSLQYIWLHDNPWD---------------------------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCBC---------------------------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HHHHhCCcCCCEEEccCCCcc---------------------------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 667899999999999998643 33556777777777776 67776665544
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=7.1e-19 Score=172.53 Aligned_cols=195 Identities=22% Similarity=0.174 Sum_probs=159.4
Q ss_pred CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccC
Q 043408 1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEH 79 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~ 79 (492)
+|+++++++++++.+|.++. ++|+.|+|++|.+....+ .+..+++|++|+|++|. +..++.. +.+++|++|++++
T Consensus 11 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDLSH 86 (290)
T ss_dssp TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEEECCS
T ss_pred CccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEEECCC
Confidence 47899999999999997765 799999999998765544 48999999999999965 5555544 7899999999999
Q ss_pred CCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcc
Q 043408 80 CRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLP 158 (492)
Q Consensus 80 ~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp 158 (492)
|. +..+|..+ .+++|++|++++|......+..+.++++|++|+|++|......+..+..+++|+.|+|++|... .+|
T Consensus 87 N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~ 164 (290)
T 1p9a_G 87 NQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELP 164 (290)
T ss_dssp SC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCC
T ss_pred Cc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-ccC
Confidence 86 77888766 8999999999997544433467999999999999999877666666789999999999997554 555
Q ss_pred c-ccCCcccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCccc
Q 043408 159 N-ELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFE 222 (492)
Q Consensus 159 ~-~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~ 222 (492)
. .+..+++|+.|++++|.++.+|..+ ..+++|+.|+|++|.+.
T Consensus 165 ~~~~~~l~~L~~L~L~~N~l~~ip~~~---------------------~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 165 AGLLNGLENLDTLLLQENSLYTIPKGF---------------------FGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTT---------------------TTTCCCSEEECCSCCBC
T ss_pred HHHhcCcCCCCEEECCCCcCCccChhh---------------------cccccCCeEEeCCCCcc
Confidence 4 5688999999999999998877644 44556777888888765
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=3.3e-19 Score=169.53 Aligned_cols=193 Identities=16% Similarity=0.194 Sum_probs=102.7
Q ss_pred CCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCc-c-CCCCCCEEEeeCCCCCcccC-ccccCCCCCcEE
Q 043408 46 TNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTS-I-HLESLKTLILSGCSNLMKLP-SSIERLSSLILL 122 (492)
Q Consensus 46 ~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~-~-~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L 122 (492)
++|++|+|++|......+..+..+++|++|++++|..++.++.. + ++++|++|++++|+.+..++ ..+.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 35566666554322222224555566666666655444444432 2 55666666666544444444 345666666666
Q ss_pred EcccCCCCCccccccCCCCCCC---EEeccCCCCCCCccc-ccCCccccc-ccccccccccccccccccCCCCcccccCC
Q 043408 123 NLRNCSRLEGLPSKICKLKSLE---RLNLSGCSNLQRLPN-ELGNLEALK-ELKAEGIAIREVPSSIVCLKNLGRLSFES 197 (492)
Q Consensus 123 ~L~~~~~l~~lp~~i~~l~~L~---~L~Ls~c~~l~~lp~-~l~~l~~L~-~L~l~~~~i~~lp~~~~~l~~L~~L~l~~ 197 (492)
++++|...+ +|. +..+++|+ +|++++|..++.+|. .++.+++|+ .|++++|.++.+|......++|+.|++.+
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCC
Confidence 666665433 554 55566665 777776634444443 366667777 77777777666665433223444444444
Q ss_pred Cc---CC-ccccCCC-CCCcEEecCCCcccccchhhhcCccccccccccc
Q 043408 198 FK---EL-PECLGQL-SSLRILFLDKNNFERIPESIICLSHLYWLRISYC 242 (492)
Q Consensus 198 ~~---~l-p~~l~~l-~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c 242 (492)
+. .+ +..+..+ ++|+.|++++|+++.+|.. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 32 12 1234455 5666666666666555543 4455555555554
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=1.3e-18 Score=168.90 Aligned_cols=224 Identities=25% Similarity=0.251 Sum_probs=154.7
Q ss_pred EEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCC-cc-CCCCCCEEEeeCCC
Q 043408 27 HLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLST-SI-HLESLKTLILSGCS 104 (492)
Q Consensus 27 ~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~-~~-~l~~L~~L~L~~c~ 104 (492)
.++.++.. .+.+|. .-.++|++|+|++|......+..+..+++|++|++++|. +..++. .+ ++++|++|++++|.
T Consensus 11 ~~~c~~~~-l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELN-FYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSC-CSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCC-ccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCc
Confidence 34444433 334554 112578899998865444444477888889999988875 555544 23 78888888888865
Q ss_pred CCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCC-CcccccCCccccccccccccccccccc-
Q 043408 105 NLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQ-RLPNELGNLEALKELKAEGIAIREVPS- 182 (492)
Q Consensus 105 ~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~-~lp~~l~~l~~L~~L~l~~~~i~~lp~- 182 (492)
.....+..+.++++|++|++++|......+..+.++++|++|++++|.... .+|..++.+++|+.|++++|.++.++.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 444444667888888888888877666555567788888888888865544 367778888888888888887776643
Q ss_pred ccccCCCCcccccCCCcCCccccCCCCCCc-EEecCCCcccccchhhhcCccccccccccccccccCCCC----Ccccce
Q 043408 183 SIVCLKNLGRLSFESFKELPECLGQLSSLR-ILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPEL----PCDLSD 257 (492)
Q Consensus 183 ~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~-~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l----~~sL~~ 257 (492)
.+..+++ ++.|. .|++++|.++.++.......+|+.|++++|. ++.+|.. .++|+.
T Consensus 168 ~~~~l~~------------------L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 228 (276)
T 2z62_A 168 DLRVLHQ------------------MPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQK 228 (276)
T ss_dssp GGHHHHT------------------CTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCE
T ss_pred Hhhhhhh------------------ccccceeeecCCCcccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccE
Confidence 2322222 23333 8999999999888777777799999999986 6676642 467889
Q ss_pred eecc------ccccccccccc
Q 043408 258 IEAH------CCSSLEALSGL 272 (492)
Q Consensus 258 L~~~------~C~~L~~l~~~ 272 (492)
|++. +|+.++.+..+
T Consensus 229 L~l~~N~~~c~c~~l~~l~~~ 249 (276)
T 2z62_A 229 IWLHTNPWDCSCPRIDYLSRW 249 (276)
T ss_dssp EECCSSCBCCCTTTTHHHHHH
T ss_pred EEccCCcccccCCchHHHHHH
Confidence 9888 45555555443
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.80 E-value=2.3e-18 Score=166.87 Aligned_cols=198 Identities=24% Similarity=0.318 Sum_probs=145.2
Q ss_pred CCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCcc--CCCCCCEEEe
Q 043408 23 VNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI--HLESLKTLIL 100 (492)
Q Consensus 23 ~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~L 100 (492)
.+++.++++++.+. .+|. .-.++|++|+|++|......+..+..+++|++|++++|. +..++... ++++|++|++
T Consensus 16 ~~~~~l~~~~~~l~-~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCS-SCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCC-ccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEEC
Confidence 45889999987754 5554 123689999999876444444478889999999998876 56666543 6888888888
Q ss_pred eCCCCCcccC-ccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccc
Q 043408 101 SGCSNLMKLP-SSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIRE 179 (492)
Q Consensus 101 ~~c~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~ 179 (492)
++|. +..+| ..+..+++|++|++++|......+..+..+++|++|++++|...+..+..++.+++|+.|++++|.+..
T Consensus 93 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 93 TDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 8865 44444 446778888888888877666666667778888888888764443333346777777777777777766
Q ss_pred cccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccch-hhhcCccccccccccccc
Q 043408 180 VPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPE-SIICLSHLYWLRISYCER 244 (492)
Q Consensus 180 lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~ 244 (492)
++. ..+..+++|+.|+|++|.++.+|. .+..+++|+.|++++|+.
T Consensus 172 ~~~--------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 172 VPE--------------------GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCT--------------------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred eCh--------------------hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 543 245778899999999999998876 477899999999999863
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=1.2e-18 Score=172.33 Aligned_cols=207 Identities=22% Similarity=0.315 Sum_probs=160.0
Q ss_pred cCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccC
Q 043408 8 PHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLS 87 (492)
Q Consensus 8 ~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp 87 (492)
..+++..+. ....+++|+.|++++|.+ +.++.+..+++|++|+|++|. +..++. +..+++|++|++++|. ++.++
T Consensus 27 ~~~~~~~~~-~~~~l~~L~~L~l~~~~i-~~l~~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~ 101 (308)
T 1h6u_A 27 GKSNVTDTV-TQADLDGITTLSAFGTGV-TTIEGVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS 101 (308)
T ss_dssp TCSSTTSEE-CHHHHHTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG
T ss_pred CCCCcCcee-cHHHcCCcCEEEeeCCCc-cCchhhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCc-CCCch
Confidence 334444331 234688999999999865 456788899999999999974 555665 8899999999999987 77777
Q ss_pred CccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccc
Q 043408 88 TSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEAL 167 (492)
Q Consensus 88 ~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L 167 (492)
....+++|++|++++|. +..++. +..+++|++|++++|...+ ++. +..+++|+.|++++|. +..++. +..+++|
T Consensus 102 ~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L 175 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQ-VSDLTP-LANLSKL 175 (308)
T ss_dssp GGTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTC
T ss_pred hhcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCc-CCCChh-hcCCCCC
Confidence 65589999999999975 455554 8999999999999987654 333 8889999999999974 445555 8899999
Q ss_pred cccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccchhhhcCcccccccccccccccc
Q 043408 168 KELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKS 247 (492)
Q Consensus 168 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~ 247 (492)
+.|++++|.+..++. +..+++|+.|++++|.++.++. +..+++|+.|++++|+ +..
T Consensus 176 ~~L~l~~n~l~~~~~----------------------l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~-i~~ 231 (308)
T 1h6u_A 176 TTLKADDNKISDISP----------------------LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT-ITN 231 (308)
T ss_dssp CEEECCSSCCCCCGG----------------------GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE-EEC
T ss_pred CEEECCCCccCcChh----------------------hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe-eec
Confidence 999999999887753 3456777888888888877766 6778888888888865 344
Q ss_pred CC
Q 043408 248 LP 249 (492)
Q Consensus 248 lp 249 (492)
.|
T Consensus 232 ~~ 233 (308)
T 1h6u_A 232 QP 233 (308)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=1.3e-18 Score=165.34 Aligned_cols=202 Identities=17% Similarity=0.161 Sum_probs=128.2
Q ss_pred CcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccc-cccCCcCCcEEeccCCCCCcccCC
Q 043408 11 SIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHS-SIQYLNKLIVLNLEHCRSLTSLST 88 (492)
Q Consensus 11 ~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~-si~~L~~L~~L~L~~~~~l~~lp~ 88 (492)
+++++|. +. ++|++|+|++|.+....+ .+..+++|++|++++|..+..++. .+..+++|++|++++|..++.++.
T Consensus 22 ~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 22 DIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp SCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred CccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 3556665 32 367777777776544444 367777777777777654555554 566777777777776444666654
Q ss_pred cc--CCCCCCEEEeeCCCCCcccCccccCCCCCc---EEEcccCCCCCccc-cccCCCCCCC-EEeccCCCCCCCccccc
Q 043408 89 SI--HLESLKTLILSGCSNLMKLPSSIERLSSLI---LLNLRNCSRLEGLP-SKICKLKSLE-RLNLSGCSNLQRLPNEL 161 (492)
Q Consensus 89 ~~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~---~L~L~~~~~l~~lp-~~i~~l~~L~-~L~Ls~c~~l~~lp~~l 161 (492)
.. ++++|++|++++|. +..+|. +..+++|+ +|++++|..+..+| ..+..+++|+ +|++++|.. ..+|...
T Consensus 99 ~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l-~~i~~~~ 175 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYA 175 (239)
T ss_dssp TSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC-CEECTTT
T ss_pred HHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC-cccCHhh
Confidence 33 67777777777754 444665 66666666 77777773344443 3466777777 777777543 3555543
Q ss_pred CCccccccccccccc-cccccc-ccccC-CCCcccccCCCc--CCccccCCCCCCcEEecCCCc
Q 043408 162 GNLEALKELKAEGIA-IREVPS-SIVCL-KNLGRLSFESFK--ELPECLGQLSSLRILFLDKNN 220 (492)
Q Consensus 162 ~~l~~L~~L~l~~~~-i~~lp~-~~~~l-~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~ 220 (492)
...++|+.|++++|. ++.+|. .+..+ ++|+.|+++++. .+|.. .+++|+.|+++++.
T Consensus 176 ~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 176 FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred cCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 333677777777774 776653 45666 777777777754 34443 57788888887763
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=3.1e-18 Score=169.35 Aligned_cols=168 Identities=24% Similarity=0.336 Sum_probs=83.2
Q ss_pred CCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEE
Q 043408 43 SLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILL 122 (492)
Q Consensus 43 ~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L 122 (492)
..+++|++|++++|. +..++ .+..+++|++|++++|. +..++....+++|++|++++|. +..++ .+..+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~-i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 38 ADLDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDNQ-ITDLAPLKNLTKITELELSGNP-LKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEE
T ss_pred HHcCCcCEEEeeCCC-ccCch-hhhccCCCCEEEccCCc-CCCChhHccCCCCCEEEccCCc-CCCch-hhcCCCCCCEE
Confidence 344555555555542 33333 35555555555555543 4444442255555555555543 33332 45555555555
Q ss_pred EcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCcCCc
Q 043408 123 NLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELP 202 (492)
Q Consensus 123 ~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp 202 (492)
++++|...+ ++. +..+++|++|++++|.. ..++. ++.+++|+.|++++|.+..++.
T Consensus 113 ~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~~~~-------------------- 168 (308)
T 1h6u_A 113 DLTSTQITD-VTP-LAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNAQVSDLTP-------------------- 168 (308)
T ss_dssp ECTTSCCCC-CGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECCSSCCCCCGG--------------------
T ss_pred ECCCCCCCC-chh-hcCCCCCCEEECCCCcc-CcCcc-ccCCCCccEEEccCCcCCCChh--------------------
Confidence 555554332 222 55555555555555432 22322 4455555555555555444321
Q ss_pred cccCCCCCCcEEecCCCcccccchhhhcCccccccccccc
Q 043408 203 ECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYC 242 (492)
Q Consensus 203 ~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c 242 (492)
+..+++|+.|++++|.++.++. +..+++|+.|++++|
T Consensus 169 --l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 169 --LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNN 205 (308)
T ss_dssp --GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTS
T ss_pred --hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCC
Confidence 2344555555555555555443 455555555555554
No 79
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=1.8e-18 Score=174.10 Aligned_cols=230 Identities=17% Similarity=0.160 Sum_probs=96.8
Q ss_pred EccCCCcccccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccc-cccCCcCCcEEeccCCCCC
Q 043408 6 EMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHS-SIQYLNKLIVLNLEHCRSL 83 (492)
Q Consensus 6 ~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~-si~~L~~L~~L~L~~~~~l 83 (492)
+-++++++++|.++ .+++++|+|++|++....++ |.++++|++|+|++|.....++. .+..+++|+.+...++..+
T Consensus 15 ~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 15 LCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp EEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred EecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence 33444444444433 13444555554443222221 44445555555554444333332 2334444443332222233
Q ss_pred cccCCcc--CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCcccc-ccCCC-CCCCEEeccCCCCCCCccc
Q 043408 84 TSLSTSI--HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPS-KICKL-KSLERLNLSGCSNLQRLPN 159 (492)
Q Consensus 84 ~~lp~~~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~i~~l-~~L~~L~Ls~c~~l~~lp~ 159 (492)
..++... .+++|++|++++|......+..+....++..|++.++..+..++. .+..+ ..++.|++++| .++.+|.
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~ 171 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHN 171 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECT
T ss_pred cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCCh
Confidence 3333221 444455555544322111112233333444444444433333332 12222 23444444442 2233443
Q ss_pred ccCCcccccccccc-cccccccccc-cccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCc-ccccchhhhcCccc
Q 043408 160 ELGNLEALKELKAE-GIAIREVPSS-IVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNN-FERIPESIICLSHL 234 (492)
Q Consensus 160 ~l~~l~~L~~L~l~-~~~i~~lp~~-~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L 234 (492)
......+|+.|++. +|.++.+|.. +..+++|+.|+++++. .+|. ..+.+|+.|.+.+++ ++.+| .+..+++|
T Consensus 172 ~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L 248 (350)
T 4ay9_X 172 SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARSTYNLKKLP-TLEKLVAL 248 (350)
T ss_dssp TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEECTTCTTCCCCC-CTTTCCSC
T ss_pred hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhhccCCCcCcCC-CchhCcCh
Confidence 33333444444443 2344444432 3444444455444443 2332 224455555544443 56666 36666777
Q ss_pred ccccccc
Q 043408 235 YWLRISY 241 (492)
Q Consensus 235 ~~L~L~~ 241 (492)
+.+++.+
T Consensus 249 ~~l~l~~ 255 (350)
T 4ay9_X 249 MEASLTY 255 (350)
T ss_dssp CEEECSC
T ss_pred hhCcCCC
Confidence 7776654
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=2.7e-20 Score=185.72 Aligned_cols=227 Identities=22% Similarity=0.274 Sum_probs=181.2
Q ss_pred CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCC-CCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408 1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTK-IPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE 78 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~-~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~ 78 (492)
+++.|+++++.+...+..+..+++|++|+|++|.+... ++. +..+++|++|+|++|......+..++.+++|++|+++
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence 47899999999998887788899999999999986543 444 7889999999999997666788889999999999999
Q ss_pred CCCCCcc--cCCcc-CCCCCCEEEeeCCCCCcc--cCccccCCC-CCcEEEcccCC--CC-CccccccCCCCCCCEEecc
Q 043408 79 HCRSLTS--LSTSI-HLESLKTLILSGCSNLMK--LPSSIERLS-SLILLNLRNCS--RL-EGLPSKICKLKSLERLNLS 149 (492)
Q Consensus 79 ~~~~l~~--lp~~~-~l~~L~~L~L~~c~~l~~--lp~~i~~l~-~L~~L~L~~~~--~l-~~lp~~i~~l~~L~~L~Ls 149 (492)
+|..+.. ++..+ ++++|++|++++|..+.. ++..+..++ +|++|++++|. .. ..+|..+.++++|+.|+++
T Consensus 151 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 230 (336)
T 2ast_B 151 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 230 (336)
T ss_dssp TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred CCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence 9965653 55544 799999999999845553 677789999 99999999984 33 4567778889999999999
Q ss_pred CCCCC-CCcccccCCccccccccccccc-cc-ccccccccCCCCcccccCCCcCCcc-ccCCC-CCCcEEecCCCcccc-
Q 043408 150 GCSNL-QRLPNELGNLEALKELKAEGIA-IR-EVPSSIVCLKNLGRLSFESFKELPE-CLGQL-SSLRILFLDKNNFER- 223 (492)
Q Consensus 150 ~c~~l-~~lp~~l~~l~~L~~L~l~~~~-i~-~lp~~~~~l~~L~~L~l~~~~~lp~-~l~~l-~~L~~L~L~~n~l~~- 223 (492)
+|..+ ...+..+..+++|+.|++++|. +. .....+..+++|+.|++.+| +++ .+..+ ..|+.|++++|.++.
T Consensus 231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQINCSHFTTI 308 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSEESCCCSCCT
T ss_pred CCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--cCHHHHHHHHhhCcceEEecccCccc
Confidence 99844 4667788999999999999995 32 11125788999999999999 554 34444 347777899999884
Q ss_pred cchhhh
Q 043408 224 IPESII 229 (492)
Q Consensus 224 lp~~l~ 229 (492)
.|..++
T Consensus 309 ~~~~~~ 314 (336)
T 2ast_B 309 ARPTIG 314 (336)
T ss_dssp TCSSCS
T ss_pred cCCccc
Confidence 454443
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=1.4e-20 Score=191.85 Aligned_cols=233 Identities=15% Similarity=0.108 Sum_probs=173.1
Q ss_pred cccccccccCCCCCcEEEccCCCCCCCC----C-CCCCCCCccEEEeeCcc--cC-ccccccc-------cCCcCCcEEe
Q 043408 12 IKQLWKGVQRLVNLKHLNLSHSEHLTKI----P-DLSLATNLESLTFRGCT--SL-LETHSSI-------QYLNKLIVLN 76 (492)
Q Consensus 12 i~~l~~~~~~l~~L~~L~Ls~~~~l~~~----p-~l~~~~nL~~L~L~~c~--~l-~~~~~si-------~~L~~L~~L~ 76 (492)
+..+...+..+++|+.|+|++|.+.... + .+..+++|++|+|++|. .+ ..+|..+ ..+++|++|+
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 3355666778899999999998765432 2 37788999999999873 22 2344443 6889999999
Q ss_pred ccCCCCCc----ccCCcc-CCCCCCEEEeeCCCCCcc----cCccccCC---------CCCcEEEcccCCCC-Cccc---
Q 043408 77 LEHCRSLT----SLSTSI-HLESLKTLILSGCSNLMK----LPSSIERL---------SSLILLNLRNCSRL-EGLP--- 134 (492)
Q Consensus 77 L~~~~~l~----~lp~~~-~l~~L~~L~L~~c~~l~~----lp~~i~~l---------~~L~~L~L~~~~~l-~~lp--- 134 (492)
|++|..-. .++..+ .+++|++|++++|..... ++..+..+ ++|++|++++|... ..++
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 99987333 244444 789999999999765322 33334444 89999999998876 3444
Q ss_pred cccCCCCCCCEEeccCCCCCC-----CcccccCCcccccccccccccc-----cccccccccCCCCcccccCCCcC----
Q 043408 135 SKICKLKSLERLNLSGCSNLQ-----RLPNELGNLEALKELKAEGIAI-----REVPSSIVCLKNLGRLSFESFKE---- 200 (492)
Q Consensus 135 ~~i~~l~~L~~L~Ls~c~~l~-----~lp~~l~~l~~L~~L~l~~~~i-----~~lp~~~~~l~~L~~L~l~~~~~---- 200 (492)
..+..+++|++|++++|.... .++..+..+++|+.|++++|.+ ..+|..+..+++|+.|++++|.-
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 466778899999999975431 2344778889999999999988 56788888889999999988862
Q ss_pred ---Ccccc--CCCCCCcEEecCCCcccc-----cchhh-hcCccccccccccccc
Q 043408 201 ---LPECL--GQLSSLRILFLDKNNFER-----IPESI-ICLSHLYWLRISYCER 244 (492)
Q Consensus 201 ---lp~~l--~~l~~L~~L~L~~n~l~~-----lp~~l-~~l~~L~~L~L~~c~~ 244 (492)
++..+ +.+++|+.|+|++|.++. +|..+ .++++|+.|++++|+.
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 45555 448899999999999886 88877 5689999999998764
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=171.11 Aligned_cols=217 Identities=17% Similarity=0.094 Sum_probs=137.8
Q ss_pred CCcEEEccCCCCCCC----CCCCCCCCCccEEEeeCcccCccccccc--cCCcCCcEEeccCCCCCcccCCc-----cCC
Q 043408 24 NLKHLNLSHSEHLTK----IPDLSLATNLESLTFRGCTSLLETHSSI--QYLNKLIVLNLEHCRSLTSLSTS-----IHL 92 (492)
Q Consensus 24 ~L~~L~Ls~~~~l~~----~p~l~~~~nL~~L~L~~c~~l~~~~~si--~~L~~L~~L~L~~~~~l~~lp~~-----~~l 92 (492)
.++.+.+.++..... +..+..+++|++|+|++|......|..+ ..+++|++|++++|......+.. ..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 356666665543211 1112223557777777766666666665 66777777777776533322210 146
Q ss_pred CCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCc--cc--cccCCCCCCCEEeccCCCCCCCccc----ccCCc
Q 043408 93 ESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEG--LP--SKICKLKSLERLNLSGCSNLQRLPN----ELGNL 164 (492)
Q Consensus 93 ~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~--lp--~~i~~l~~L~~L~Ls~c~~l~~lp~----~l~~l 164 (492)
++|++|++++|......+..++.+++|++|+|++|...+. ++ ..+..+++|++|++++|.. +.++. .++.+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcC
Confidence 6777777777655444455677777777777777765432 22 2235677777777777543 33433 24566
Q ss_pred cccccccccccccccc-ccccccC---CCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhhcCccccccc
Q 043408 165 EALKELKAEGIAIREV-PSSIVCL---KNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLR 238 (492)
Q Consensus 165 ~~L~~L~l~~~~i~~l-p~~~~~l---~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 238 (492)
++|++|++++|.+..+ |..+..+ ++|+.|++++|. .+|..+. ++|+.|+|++|+++.+|. +..+++|+.|+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~ 300 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLT 300 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEE
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEE
Confidence 7777777777777765 6555555 577777777665 4666553 789999999999998875 67889999999
Q ss_pred cccccc
Q 043408 239 ISYCER 244 (492)
Q Consensus 239 L~~c~~ 244 (492)
+++|+.
T Consensus 301 L~~N~l 306 (310)
T 4glp_A 301 LDGNPF 306 (310)
T ss_dssp CSSTTT
T ss_pred CcCCCC
Confidence 999763
No 83
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.76 E-value=6.8e-20 Score=190.78 Aligned_cols=262 Identities=20% Similarity=0.190 Sum_probs=141.8
Q ss_pred ceEEEccCCCcc-----cccccccCCCCCcEEEccCCCCCCCCC----C--CCCCCCccEEEeeCcccCc----cccccc
Q 043408 2 LVSLEMPHSSIK-----QLWKGVQRLVNLKHLNLSHSEHLTKIP----D--LSLATNLESLTFRGCTSLL----ETHSSI 66 (492)
Q Consensus 2 L~~L~L~~s~i~-----~l~~~~~~l~~L~~L~Ls~~~~l~~~p----~--l~~~~nL~~L~L~~c~~l~----~~~~si 66 (492)
|++|+|++|+|. .++..+..+++|++|+|++|.+....+ . ....++|++|+|++|.... .++..+
T Consensus 87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 166 (461)
T 1z7x_W 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence 444455544444 233444444555555555444321100 0 1123345555555543222 123334
Q ss_pred cCCcCCcEEeccCCCCCcc-----cCCcc--CCCCCCEEEeeCCCCCc----ccCccccCCCCCcEEEcccCCCCCc---
Q 043408 67 QYLNKLIVLNLEHCRSLTS-----LSTSI--HLESLKTLILSGCSNLM----KLPSSIERLSSLILLNLRNCSRLEG--- 132 (492)
Q Consensus 67 ~~L~~L~~L~L~~~~~l~~-----lp~~~--~l~~L~~L~L~~c~~l~----~lp~~i~~l~~L~~L~L~~~~~l~~--- 132 (492)
..+++|+.|++++|. +.. +...+ ..++|++|++++|.... .++..+..+++|++|++++|.....
T Consensus 167 ~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 167 RAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred hhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 445666666666654 221 11111 24466677776654332 1455566677777777777654332
Q ss_pred -c-ccccCCCCCCCEEeccCCCCCCC----cccccCCccccccccccccccccc-----ccccc-cCCCCcccccCCCcC
Q 043408 133 -L-PSKICKLKSLERLNLSGCSNLQR----LPNELGNLEALKELKAEGIAIREV-----PSSIV-CLKNLGRLSFESFKE 200 (492)
Q Consensus 133 -l-p~~i~~l~~L~~L~Ls~c~~l~~----lp~~l~~l~~L~~L~l~~~~i~~l-----p~~~~-~l~~L~~L~l~~~~~ 200 (492)
+ +.....+++|++|++++|..... ++..+..+++|++|++++|.+... ...+. ..++|+.|++++|.-
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 1 12223467777777777643322 555666677777777777776522 11111 225777777777651
Q ss_pred -------CccccCCCCCCcEEecCCCccccc-chhhh----c-Cccccccccccccccc----cCCCC---Ccccceeec
Q 043408 201 -------LPECLGQLSSLRILFLDKNNFERI-PESII----C-LSHLYWLRISYCERLK----SLPEL---PCDLSDIEA 260 (492)
Q Consensus 201 -------lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~----~-l~~L~~L~L~~c~~l~----~lp~l---~~sL~~L~~ 260 (492)
++..+..+++|+.|+|++|.++.. +..+. . .++|+.|++++|..-. .+|.. .++|++|++
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l 405 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEEC
Confidence 345566778889999998887632 22332 2 6788899998885332 44442 467888888
Q ss_pred cccc
Q 043408 261 HCCS 264 (492)
Q Consensus 261 ~~C~ 264 (492)
.+|.
T Consensus 406 ~~N~ 409 (461)
T 1z7x_W 406 SNNC 409 (461)
T ss_dssp CSSS
T ss_pred CCCC
Confidence 8763
No 84
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=1e-17 Score=168.53 Aligned_cols=231 Identities=19% Similarity=0.214 Sum_probs=181.4
Q ss_pred cEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccc-cccCCcCCcEEeccCCCCCcccCCcc--CCCCCCEEEee
Q 043408 26 KHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHS-SIQYLNKLIVLNLEHCRSLTSLSTSI--HLESLKTLILS 101 (492)
Q Consensus 26 ~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~-si~~L~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~L~ 101 (492)
+.++.++++ ++.+|. + .+++++|+|++| .+..+|. .+..+++|++|+|++|..++.++... ++++|+++...
T Consensus 12 ~~v~C~~~~-Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESK-VTEIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTT-CCSCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCC-CCccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 577888766 456664 4 478999999996 4667775 57899999999999998777777644 78998887666
Q ss_pred CCCCCcccC-ccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc-cCCc-cccccccccccccc
Q 043408 102 GCSNLMKLP-SSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE-LGNL-EALKELKAEGIAIR 178 (492)
Q Consensus 102 ~c~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l-~~L~~L~l~~~~i~ 178 (492)
+++.+..++ ..+..+++|++|++++|......+..+....++..|++.++..+..++.. +..+ ..++.|++++|+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 666777774 56899999999999999876655556667778999999888888777653 4554 46899999999999
Q ss_pred ccccccccCCCCcccccCCCc---CCcc-ccCCCCCCcEEecCCCcccccchhhhcCccccccccccccccccCCCC--C
Q 043408 179 EVPSSIVCLKNLGRLSFESFK---ELPE-CLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPEL--P 252 (492)
Q Consensus 179 ~lp~~~~~l~~L~~L~l~~~~---~lp~-~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l--~ 252 (492)
++|..+....+|+.|.+.++. .+|. .+..+++|+.|+|++|+++.+|.. .+.+|+.|.+.+|..++.+|.+ .
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l 245 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKL 245 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTC
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhC
Confidence 999988888899999997654 4665 568999999999999999999863 3566777777777888888864 3
Q ss_pred cccceeeccc
Q 043408 253 CDLSDIEAHC 262 (492)
Q Consensus 253 ~sL~~L~~~~ 262 (492)
++|+.+++.+
T Consensus 246 ~~L~~l~l~~ 255 (350)
T 4ay9_X 246 VALMEASLTY 255 (350)
T ss_dssp CSCCEEECSC
T ss_pred cChhhCcCCC
Confidence 5667666543
No 85
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=2.9e-20 Score=193.65 Aligned_cols=264 Identities=21% Similarity=0.189 Sum_probs=170.6
Q ss_pred CceEEEccCCCccccc--ccccCCCCCcEEEccCCCCCCC----CCC-CCCCCCccEEEeeCcccCccccccc-cCCc--
Q 043408 1 NLVSLEMPHSSIKQLW--KGVQRLVNLKHLNLSHSEHLTK----IPD-LSLATNLESLTFRGCTSLLETHSSI-QYLN-- 70 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~--~~~~~l~~L~~L~Ls~~~~l~~----~p~-l~~~~nL~~L~L~~c~~l~~~~~si-~~L~-- 70 (492)
+|++|+|+++++.... ..+..+++|++|+|++|.+... ++. +..+++|++|+|++|......+..+ ..+.
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 3688888888887543 3367788888888888875422 232 5667888888888876433333233 2344
Q ss_pred --CCcEEeccCCCCCc----ccCCcc-CCCCCCEEEeeCCCCCcccCccc-----cCCCCCcEEEcccCCCCCc----cc
Q 043408 71 --KLIVLNLEHCRSLT----SLSTSI-HLESLKTLILSGCSNLMKLPSSI-----ERLSSLILLNLRNCSRLEG----LP 134 (492)
Q Consensus 71 --~L~~L~L~~~~~l~----~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i-----~~l~~L~~L~L~~~~~l~~----lp 134 (492)
+|++|++++|..-. .++..+ .+++|++|++++|......+..+ ...++|++|++++|..... ++
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 68888888876321 334444 67888888888876332222222 2356788888888866552 35
Q ss_pred cccCCCCCCCEEeccCCCCCCCcccccC-----Ccccccccccccccccc-----cccccccCCCCcccccCCCcC----
Q 043408 135 SKICKLKSLERLNLSGCSNLQRLPNELG-----NLEALKELKAEGIAIRE-----VPSSIVCLKNLGRLSFESFKE---- 200 (492)
Q Consensus 135 ~~i~~l~~L~~L~Ls~c~~l~~lp~~l~-----~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~---- 200 (492)
..+..+++|++|++++|......+..+. ..++|+.|++++|.+.. ++..+..+++|++|+++++.-
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 5566678888888888764322222221 24578888888887775 566677788888888888751
Q ss_pred ---C-ccccCCCCCCcEEecCCCcccc-----cchhhhcCccccccccccccccc----cC----CCCCcccceeecccc
Q 043408 201 ---L-PECLGQLSSLRILFLDKNNFER-----IPESIICLSHLYWLRISYCERLK----SL----PELPCDLSDIEAHCC 263 (492)
Q Consensus 201 ---l-p~~l~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~c~~l~----~l----p~l~~sL~~L~~~~C 263 (492)
+ +.....+++|+.|++++|.++. ++..+..+++|+.|++++|..-. .+ ....++|+.|++.+|
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 1 1122357788888888888774 67777778888888888874211 11 112257788887777
Q ss_pred c
Q 043408 264 S 264 (492)
Q Consensus 264 ~ 264 (492)
.
T Consensus 324 ~ 324 (461)
T 1z7x_W 324 S 324 (461)
T ss_dssp C
T ss_pred C
Confidence 4
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.74 E-value=5.7e-18 Score=167.45 Aligned_cols=217 Identities=21% Similarity=0.179 Sum_probs=167.5
Q ss_pred ceEEEccCCCccc--ccc--cccCCCCCcEEEccCCCCCCCCCC-C--CCCCCccEEEeeCcccCcccc----ccccCCc
Q 043408 2 LVSLEMPHSSIKQ--LWK--GVQRLVNLKHLNLSHSEHLTKIPD-L--SLATNLESLTFRGCTSLLETH----SSIQYLN 70 (492)
Q Consensus 2 L~~L~L~~s~i~~--l~~--~~~~l~~L~~L~Ls~~~~l~~~p~-l--~~~~nL~~L~L~~c~~l~~~~----~si~~L~ 70 (492)
++.|.+.+..+.. +.. ....+++|++|+|++|.+....|. + ..+++|++|+|++|......+ ..+..++
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~ 145 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP 145 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence 5677777777652 211 122357799999999998777765 5 889999999999987665443 3445789
Q ss_pred CCcEEeccCCCCCcccCCcc-CCCCCCEEEeeCCCCCcc--cC--ccccCCCCCcEEEcccCCCCCcccc----ccCCCC
Q 043408 71 KLIVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMK--LP--SSIERLSSLILLNLRNCSRLEGLPS----KICKLK 141 (492)
Q Consensus 71 ~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~--lp--~~i~~l~~L~~L~L~~~~~l~~lp~----~i~~l~ 141 (492)
+|++|++++|......+..+ .+++|++|++++|..... ++ ..++.+++|++|+|++|... .++. .+..++
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGV 224 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTC
T ss_pred CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCC
Confidence 99999999987433333444 899999999999865542 32 33578999999999998764 3333 246789
Q ss_pred CCCEEeccCCCCCCCcccccCCc---ccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEec
Q 043408 142 SLERLNLSGCSNLQRLPNELGNL---EALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFL 216 (492)
Q Consensus 142 ~L~~L~Ls~c~~l~~lp~~l~~l---~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L 216 (492)
+|++|+|++|...+..|..++.+ ++|+.|++++|.++.+|..+. ++|+.|++++|. .+|. +..+++|+.|+|
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L 301 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTL 301 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEEC
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEEC
Confidence 99999999987777668777776 699999999999999998775 899999999986 3444 688999999999
Q ss_pred CCCccc
Q 043408 217 DKNNFE 222 (492)
Q Consensus 217 ~~n~l~ 222 (492)
++|+++
T Consensus 302 ~~N~l~ 307 (310)
T 4glp_A 302 DGNPFL 307 (310)
T ss_dssp SSTTTS
T ss_pred cCCCCC
Confidence 999976
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=6.6e-17 Score=154.80 Aligned_cols=173 Identities=23% Similarity=0.224 Sum_probs=116.4
Q ss_pred ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408 2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC 80 (492)
Q Consensus 2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~ 80 (492)
.+++++++++++.+|.++. ++|+.|+|++|.+....+. +.++++|++|+|++|......+..+..+++|++|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 3567888888888887665 5788888888877665553 777888888888886655555555777888888888876
Q ss_pred CCCcccCCcc--CCCCCCEEEeeCCCCCcccCc-cccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCc
Q 043408 81 RSLTSLSTSI--HLESLKTLILSGCSNLMKLPS-SIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRL 157 (492)
Q Consensus 81 ~~l~~lp~~~--~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l 157 (492)
. +..++... .+++|++|++++|. +..++. .+..+++|++|+|++|...+..+..+..+++|++|+|++|...+..
T Consensus 94 ~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 94 Q-LASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred c-ccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 6 44554332 67777777777753 344444 3566777777777776555444445667777777777776544444
Q ss_pred ccccCCccccccccccccccc
Q 043408 158 PNELGNLEALKELKAEGIAIR 178 (492)
Q Consensus 158 p~~l~~l~~L~~L~l~~~~i~ 178 (492)
+..+..+++|+.|++++|.+.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBC
T ss_pred HHHHhCCCCCCEEEeeCCcee
Confidence 445666677777777766654
No 88
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.73 E-value=3.4e-17 Score=176.66 Aligned_cols=135 Identities=22% Similarity=0.224 Sum_probs=65.5
Q ss_pred ceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCcccc-ccccCCcCCcEEecc
Q 043408 2 LVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETH-SSIQYLNKLIVLNLE 78 (492)
Q Consensus 2 L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~-~si~~L~~L~~L~L~ 78 (492)
+++|+|++|+|+.++ ..+..+++|++|+|++|.+....++ |.++++|++|+|++|. +..+| ..+..+.+|++|+|+
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEECT
T ss_pred CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEECC
Confidence 455555555555554 3455555555555555544332232 5555555555555543 33333 234555555555555
Q ss_pred CCCCCcccCCc-c-CCCCCCEEEeeCCCCCc-ccCccccCCCCCcEEEcccCCCCCccccccC
Q 043408 79 HCRSLTSLSTS-I-HLESLKTLILSGCSNLM-KLPSSIERLSSLILLNLRNCSRLEGLPSKIC 138 (492)
Q Consensus 79 ~~~~l~~lp~~-~-~l~~L~~L~L~~c~~l~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~ 138 (492)
+|. ++.++.. + ++++|++|++++|.... .+|..++.+++|++|++++|...+..+..+.
T Consensus 133 ~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 133 ETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp TSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 543 3444332 2 45555555555543221 2344455555555555555554444444333
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.72 E-value=2.6e-19 Score=181.17 Aligned_cols=239 Identities=15% Similarity=0.113 Sum_probs=164.4
Q ss_pred EEEccCCCcccc-cccccCCCCCcEEEccCCCCCCCCC-----CCCCCC-CccEEEeeCcccCccccccccCC-----cC
Q 043408 4 SLEMPHSSIKQL-WKGVQRLVNLKHLNLSHSEHLTKIP-----DLSLAT-NLESLTFRGCTSLLETHSSIQYL-----NK 71 (492)
Q Consensus 4 ~L~L~~s~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p-----~l~~~~-nL~~L~L~~c~~l~~~~~si~~L-----~~ 71 (492)
.++++++++... +..+...++|++|+|++|.+....+ .+..++ +|++|+|++|......+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 578899999854 4555556669999999998655443 266777 89999999987665556566554 89
Q ss_pred CcEEeccCCCCCcccCCc-----c-CC-CCCCEEEeeCCCCCcccCcc----ccC-CCCCcEEEcccCCCCC----cccc
Q 043408 72 LIVLNLEHCRSLTSLSTS-----I-HL-ESLKTLILSGCSNLMKLPSS----IER-LSSLILLNLRNCSRLE----GLPS 135 (492)
Q Consensus 72 L~~L~L~~~~~l~~lp~~-----~-~l-~~L~~L~L~~c~~l~~lp~~----i~~-l~~L~~L~L~~~~~l~----~lp~ 135 (492)
|++|+|++|. +...+.. + .+ ++|++|++++|......+.. +.. .++|++|+|++|.... .++.
T Consensus 82 L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 9999999987 4433221 1 34 79999999997643322222 344 3699999999987664 3444
Q ss_pred ccCCCC-CCCEEeccCCCCCCCcccc----cCCc-ccccccccccccccc-----cccccccC-CCCcccccCCCcC---
Q 043408 136 KICKLK-SLERLNLSGCSNLQRLPNE----LGNL-EALKELKAEGIAIRE-----VPSSIVCL-KNLGRLSFESFKE--- 200 (492)
Q Consensus 136 ~i~~l~-~L~~L~Ls~c~~l~~lp~~----l~~l-~~L~~L~l~~~~i~~-----lp~~~~~l-~~L~~L~l~~~~~--- 200 (492)
.+..++ +|++|+|++|......+.. +..+ ++|+.|++++|.+.. ++..+..+ ++|+.|++++|.-
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 455555 8999999998655544433 3344 589999999998886 66666553 4788888877652
Q ss_pred ----CccccCCCCCCcEEecCCCccc--------ccchhhhcCcccccccccccc
Q 043408 201 ----LPECLGQLSSLRILFLDKNNFE--------RIPESIICLSHLYWLRISYCE 243 (492)
Q Consensus 201 ----lp~~l~~l~~L~~L~L~~n~l~--------~lp~~l~~l~~L~~L~L~~c~ 243 (492)
+...+..+++|+.|+|++|.+. .++..+..+++|+.|++++|+
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 1233466777888888887733 334445566777777777765
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=8.5e-19 Score=178.72 Aligned_cols=225 Identities=15% Similarity=0.123 Sum_probs=177.2
Q ss_pred CceEEEccCCCccc-----ccccccCCCCCcEEEccCCCCCC---CCCC--------CCCCCCccEEEeeCcccCc----
Q 043408 1 NLVSLEMPHSSIKQ-----LWKGVQRLVNLKHLNLSHSEHLT---KIPD--------LSLATNLESLTFRGCTSLL---- 60 (492)
Q Consensus 1 nL~~L~L~~s~i~~-----l~~~~~~l~~L~~L~Ls~~~~l~---~~p~--------l~~~~nL~~L~L~~c~~l~---- 60 (492)
+|++|+|++|+|.. +...+..+++|++|+|++|.... .+|. +..+++|++|+|++|....
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence 58999999999984 44568889999999999975432 2332 3688999999999987665
Q ss_pred cccccccCCcCCcEEeccCCCCCc----ccCCcc-CC---------CCCCEEEeeCCCCC-cccC---ccccCCCCCcEE
Q 043408 61 ETHSSIQYLNKLIVLNLEHCRSLT----SLSTSI-HL---------ESLKTLILSGCSNL-MKLP---SSIERLSSLILL 122 (492)
Q Consensus 61 ~~~~si~~L~~L~~L~L~~~~~l~----~lp~~~-~l---------~~L~~L~L~~c~~l-~~lp---~~i~~l~~L~~L 122 (492)
.++..+..+++|++|+|++|..-. .++..+ .+ ++|++|++++|... ..++ ..+..+++|++|
T Consensus 113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 192 (386)
T 2ca6_A 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence 477788999999999999987321 122211 33 89999999998654 3444 467889999999
Q ss_pred EcccCCCCC-----ccccccCCCCCCCEEeccCCCCC----CCcccccCCcccccccccccccccc-----cccccc--c
Q 043408 123 NLRNCSRLE-----GLPSKICKLKSLERLNLSGCSNL----QRLPNELGNLEALKELKAEGIAIRE-----VPSSIV--C 186 (492)
Q Consensus 123 ~L~~~~~l~-----~lp~~i~~l~~L~~L~Ls~c~~l----~~lp~~l~~l~~L~~L~l~~~~i~~-----lp~~~~--~ 186 (492)
++++|.... ..|..+..+++|+.|+|++|... ..+|..+..+++|+.|++++|.+.. ++..+. .
T Consensus 193 ~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 272 (386)
T 2ca6_A 193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272 (386)
T ss_dssp ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence 999997652 24447889999999999998753 6678888999999999999999874 466664 4
Q ss_pred CCCCcccccCCCc-------CCcccc-CCCCCCcEEecCCCcccccc
Q 043408 187 LKNLGRLSFESFK-------ELPECL-GQLSSLRILFLDKNNFERIP 225 (492)
Q Consensus 187 l~~L~~L~l~~~~-------~lp~~l-~~l~~L~~L~L~~n~l~~lp 225 (492)
+++|+.|++++|. .+|..+ .++++|+.|++++|.++...
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 8999999999986 266666 66899999999999998544
No 91
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=1.2e-16 Score=170.49 Aligned_cols=182 Identities=23% Similarity=0.262 Sum_probs=110.4
Q ss_pred CCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCccCCCCCCEEEeeC
Q 043408 24 NLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSG 102 (492)
Q Consensus 24 ~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~ 102 (492)
+|+.|+|++|.+.. +|. + .++|++|+|++|. +..+| ..+++|++|++++|. +..+|. +. .+|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~-~~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNA-LISLP---ELPASLEYLDACDNR-LSTLPE-LP-ASLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC-CC-TTCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCCC-CCCcch-hh-cCCCEEECCC
Confidence 67777777776543 544 3 3677777777754 34566 446777777777764 555666 31 2777888877
Q ss_pred CCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCccccccccccccccccccc
Q 043408 103 CSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPS 182 (492)
Q Consensus 103 c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~ 182 (492)
|. +..+|. .+++|++|+|++|...+ +|. .+++|++|+|++|.. +.+|. +. ++|+.|++++|.++.+|.
T Consensus 130 N~-l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L-~~lp~-l~--~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 130 NQ-LTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQL-TFLPE-LP--ESLEALDVSTNLLESLPA 197 (571)
T ss_dssp SC-CSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC-SCCCC-CC--TTCCEEECCSSCCSSCCC
T ss_pred Cc-CCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCC-CCcch-hh--CCCCEEECcCCCCCchhh
Confidence 53 444666 57778888888776544 555 467788888887643 34766 55 778888888888877776
Q ss_pred ccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccchhhhcCccccccccccccc
Q 043408 183 SIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCER 244 (492)
Q Consensus 183 ~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~ 244 (492)
+.. +| ....+.|+.|+|++|.++.+|..+..+++|+.|+|++|+.
T Consensus 198 -~~~--~L--------------~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 198 -VPV--RN--------------HHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp -CC------------------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred -HHH--hh--------------hcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence 332 33 0112223455555555555555444455555555555443
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.70 E-value=5.2e-16 Score=148.53 Aligned_cols=177 Identities=20% Similarity=0.211 Sum_probs=124.1
Q ss_pred CCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCc-c-CCCCCCEEE
Q 043408 23 VNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTS-I-HLESLKTLI 99 (492)
Q Consensus 23 ~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~-~-~l~~L~~L~ 99 (492)
...+.++++++.+. .+|. +. ++|++|+|++|......+..+..+++|++|+|++|. +..++.. + .+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEE
Confidence 46788999887654 4553 33 688999999877666666678888899999998876 4444432 3 678888888
Q ss_pred eeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccc
Q 043408 100 LSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIRE 179 (492)
Q Consensus 100 L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~ 179 (492)
+++|......+..+..+++|++|+|++|...+..+..+..+++|++|+|++|...+..+..++.+++|+.|++++|.+..
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 88865443333456778888888888876654444456777788888887764443333357777777777777777766
Q ss_pred cccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccc
Q 043408 180 VPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFER 223 (492)
Q Consensus 180 lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~ 223 (492)
++. ..+..+++|+.|+|++|.++.
T Consensus 170 ~~~--------------------~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 170 VPH--------------------GAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCT--------------------TTTTTCTTCCEEECCSCCBCT
T ss_pred cCH--------------------HHHhCCCCCCEEEeeCCceeC
Confidence 543 345678889999999998763
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.67 E-value=1.3e-16 Score=156.53 Aligned_cols=169 Identities=22% Similarity=0.311 Sum_probs=95.8
Q ss_pred cCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCccCCCCCCEEE
Q 043408 20 QRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLI 99 (492)
Q Consensus 20 ~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~ 99 (492)
..+++|+.|++++|.+ ..++.+..+++|++|+|++|.. ..++. +..+++|++|++++|. +..++.
T Consensus 43 ~~l~~L~~L~l~~~~i-~~~~~~~~l~~L~~L~L~~n~l-~~~~~-l~~l~~L~~L~l~~n~-l~~~~~----------- 107 (291)
T 1h6t_A 43 NELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNKL-TDIKP-LANLKNLGWLFLDENK-VKDLSS----------- 107 (291)
T ss_dssp HHHHTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSC-CCCGGG-----------
T ss_pred hhcCcccEEEccCCCc-ccChhHhcCCCCCEEEccCCcc-CCCcc-cccCCCCCEEECCCCc-CCCChh-----------
Confidence 3456666666666543 3345555566666666665432 22332 5555555555555543 333333
Q ss_pred eeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccc
Q 043408 100 LSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIRE 179 (492)
Q Consensus 100 L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~ 179 (492)
+..+++|++|++++|.... + ..+..+++|+.|++++|... .+ ..++.+++|+.|++++|.+..
T Consensus 108 -------------l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 108 -------------LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp -------------GTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCC
T ss_pred -------------hccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCC-cc-hhhccCCCCCEEEccCCcccc
Confidence 4445555555555544332 2 23455566666666654332 23 345666667777777766665
Q ss_pred cccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccchhhhcCcccccccccccc
Q 043408 180 VPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCE 243 (492)
Q Consensus 180 lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~ 243 (492)
++. +..+++|+.|++++|.++.++. +..+++|+.|++++|+
T Consensus 171 ~~~----------------------l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 171 IVP----------------------LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CGG----------------------GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred chh----------------------hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCc
Confidence 432 3456677777777777777764 7777777777777765
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.67 E-value=6.8e-16 Score=151.28 Aligned_cols=170 Identities=26% Similarity=0.338 Sum_probs=137.6
Q ss_pred CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408 1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC 80 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~ 80 (492)
+|++|++++++++.++ ++..+++|++|+|++|.+.. ++.+..+++|++|+|++|. +..++ .+..+++|++|++++|
T Consensus 47 ~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD-IKPLANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSLEHN 122 (291)
T ss_dssp TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEECTTS
T ss_pred cccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCC-CcccccCCCCCEEECCCCc-CCCCh-hhccCCCCCEEECCCC
Confidence 5889999999999885 58889999999999998755 4449999999999999975 44454 4899999999999998
Q ss_pred CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc
Q 043408 81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE 160 (492)
Q Consensus 81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~ 160 (492)
. +..++....+++|+.|++++|. +..+ ..+..+++|++|++++|...+..+ +..+++|+.|++++| .+..++.
T Consensus 123 ~-i~~~~~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N-~i~~l~~- 195 (291)
T 1h6t_A 123 G-ISDINGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-HISDLRA- 195 (291)
T ss_dssp C-CCCCGGGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCBCGG-
T ss_pred c-CCCChhhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC-cCCCChh-
Confidence 6 6666655589999999999965 4444 678889999999999887655433 888899999999886 4455654
Q ss_pred cCCcccccccccccccccccc
Q 043408 161 LGNLEALKELKAEGIAIREVP 181 (492)
Q Consensus 161 l~~l~~L~~L~l~~~~i~~lp 181 (492)
+..+++|+.|++++|.+...|
T Consensus 196 l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 196 LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp GTTCTTCSEEEEEEEEEECCC
T ss_pred hccCCCCCEEECcCCcccCCc
Confidence 788888888888888877654
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.65 E-value=2.6e-15 Score=139.32 Aligned_cols=174 Identities=20% Similarity=0.150 Sum_probs=133.3
Q ss_pred eEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccc-cccCCcCCcEEeccCC
Q 043408 3 VSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHS-SIQYLNKLIVLNLEHC 80 (492)
Q Consensus 3 ~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~-si~~L~~L~~L~L~~~ 80 (492)
+.++..+++++.+|.++ .++|++|++++|.+....+. ++.+++|++|+|++|... .++. .+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCC
Confidence 35778888888888665 46899999999987654444 788999999999997544 5554 4678999999999998
Q ss_pred CCCcccCCcc--CCCCCCEEEeeCCCCCcccCc-cccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCc
Q 043408 81 RSLTSLSTSI--HLESLKTLILSGCSNLMKLPS-SIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRL 157 (492)
Q Consensus 81 ~~l~~lp~~~--~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l 157 (492)
. ++.++... ++++|++|++++|. +..++. .+..+++|++|++++|...+..+..+..+++|+.|++++|...
T Consensus 87 ~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--- 161 (208)
T 2o6s_A 87 Q-LQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--- 161 (208)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---
T ss_pred c-CCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee---
Confidence 6 66666543 78999999999965 444544 4788999999999998776555556788999999999997443
Q ss_pred ccccCCccccccccccccccc-ccccccccCC
Q 043408 158 PNELGNLEALKELKAEGIAIR-EVPSSIVCLK 188 (492)
Q Consensus 158 p~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~ 188 (492)
+.+++|+.|+++.|.+. .+|..++.++
T Consensus 162 ----~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 162 ----CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp ----CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ----cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 44567888888888777 6776655443
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.64 E-value=4.3e-18 Score=172.17 Aligned_cols=222 Identities=17% Similarity=0.160 Sum_probs=167.2
Q ss_pred CceEEEccCCCccccc-----ccccCCC-CCcEEEccCCCCCCCCCC-CCCC-----CCccEEEeeCcccCcccccc---
Q 043408 1 NLVSLEMPHSSIKQLW-----KGVQRLV-NLKHLNLSHSEHLTKIPD-LSLA-----TNLESLTFRGCTSLLETHSS--- 65 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~-----~~~~~l~-~L~~L~Ls~~~~l~~~p~-l~~~-----~nL~~L~L~~c~~l~~~~~s--- 65 (492)
+|++|+|++|++...+ ..+..++ +|++|+|++|.+....+. +..+ ++|++|+|++|......+..
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 4899999999999765 5677888 999999999987655432 4443 99999999998765555543
Q ss_pred -ccCC-cCCcEEeccCCCCCcccCCc-----c-C-CCCCCEEEeeCCCCCc----ccCccccCCC-CCcEEEcccCCCCC
Q 043408 66 -IQYL-NKLIVLNLEHCRSLTSLSTS-----I-H-LESLKTLILSGCSNLM----KLPSSIERLS-SLILLNLRNCSRLE 131 (492)
Q Consensus 66 -i~~L-~~L~~L~L~~~~~l~~lp~~-----~-~-l~~L~~L~L~~c~~l~----~lp~~i~~l~-~L~~L~L~~~~~l~ 131 (492)
+..+ ++|+.|++++|. +...+.. + . .++|++|++++|.... .++..+..++ +|++|+|++|....
T Consensus 103 ~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 3444 899999999987 4444321 1 2 4699999999975443 4455566666 99999999998766
Q ss_pred ccccc----cCCC-CCCCEEeccCCCCCCC----cccccCC-cccccccccccccccccc-----cccccCCCCcccccC
Q 043408 132 GLPSK----ICKL-KSLERLNLSGCSNLQR----LPNELGN-LEALKELKAEGIAIREVP-----SSIVCLKNLGRLSFE 196 (492)
Q Consensus 132 ~lp~~----i~~l-~~L~~L~Ls~c~~l~~----lp~~l~~-l~~L~~L~l~~~~i~~lp-----~~~~~l~~L~~L~l~ 196 (492)
..+.. +... ++|++|+|++|..... ++..+.. .++|+.|++++|.+...+ ..+..+++|+.|+++
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence 55543 3344 6999999999864432 5555555 458999999999987543 345778999999999
Q ss_pred CCc----------CCccccCCCCCCcEEecCCCcccc
Q 043408 197 SFK----------ELPECLGQLSSLRILFLDKNNFER 223 (492)
Q Consensus 197 ~~~----------~lp~~l~~l~~L~~L~L~~n~l~~ 223 (492)
+|. .++..+..+++|+.|++++|.+..
T Consensus 262 ~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred cCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 886 244567889999999999999873
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.64 E-value=1.3e-15 Score=162.57 Aligned_cols=175 Identities=23% Similarity=0.276 Sum_probs=104.2
Q ss_pred CCcEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccC
Q 043408 71 KLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSG 150 (492)
Q Consensus 71 ~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~ 150 (492)
+|+.|++++|. +..+|..+ +++|++|++++|. +..+| ..+++|++|++++|...+ +|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l-~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNL-PPQITVLEITQNA-LISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCC-CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCC-CCccCHhH-cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 45555555543 44444433 2455555555532 33444 334555666665554433 444 333 566666665
Q ss_pred CCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhh
Q 043408 151 CSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESI 228 (492)
Q Consensus 151 c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l 228 (492)
|... .+|. .+++|+.|++++|.++.+|. .+++|+.|++++|. .+|. +. ++|+.|+|++|.++.+|. +
T Consensus 130 N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~ 198 (571)
T 3cvr_A 130 NQLT-MLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-V 198 (571)
T ss_dssp SCCS-CCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-C
T ss_pred CcCC-CCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-H
Confidence 4332 2544 45566666666666666554 45566666666654 3555 44 899999999999999987 5
Q ss_pred hcCccc-------cccccccccccccCCCC---Ccccceeecccccccccc
Q 043408 229 ICLSHL-------YWLRISYCERLKSLPEL---PCDLSDIEAHCCSSLEAL 269 (492)
Q Consensus 229 ~~l~~L-------~~L~L~~c~~l~~lp~l---~~sL~~L~~~~C~~L~~l 269 (492)
.. +| +.|++++| .++.+|.. .++|+.|++.+++--..+
T Consensus 199 ~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 199 PV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp C----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred HH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 54 77 99999997 56788863 467888888887543333
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=5.3e-16 Score=166.96 Aligned_cols=180 Identities=21% Similarity=0.270 Sum_probs=122.5
Q ss_pred EEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCc
Q 043408 5 LEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLT 84 (492)
Q Consensus 5 L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~ 84 (492)
+++..+.+..+. .+..+++|+.|++++|.+ ..++.+..+++|++|+|++|.. ..+++ +..+++|+.|+|++|. +.
T Consensus 26 l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~Ls~N~l-~~~~~-l~~l~~L~~L~Ls~N~-l~ 100 (605)
T 1m9s_A 26 DNLKKKSVTDAV-TQNELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNKL-TDIKP-LTNLKNLGWLFLDENK-IK 100 (605)
T ss_dssp HHTTCSCTTSEE-CHHHHTTCCCCBCTTCCC-CCCTTGGGCTTCCEEECTTSCC-CCCGG-GGGCTTCCEEECCSSC-CC
T ss_pred HhccCCCccccc-chhcCCCCCEEECcCCCC-CCChHHccCCCCCEEEeeCCCC-CCChh-hccCCCCCEEECcCCC-CC
Confidence 344555555543 245678888888888764 4567788888888888888653 34444 7788888888888875 66
Q ss_pred ccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCc
Q 043408 85 SLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNL 164 (492)
Q Consensus 85 ~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l 164 (492)
.++....+++|+.|+|++|. +..+ +.+..+++|+.|+|++|..... ..+..+++|+.|+|++|...+..| +..+
T Consensus 101 ~l~~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l 174 (605)
T 1m9s_A 101 DLSSLKDLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGL 174 (605)
T ss_dssp CCTTSTTCTTCCEEECTTSC-CCCC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred CChhhccCCCCCEEEecCCC-CCCC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccC
Confidence 66654478888888888865 3334 4577888888888888765543 567778888888888765444333 7777
Q ss_pred ccccccccccccccccccccccCCCCcccccC
Q 043408 165 EALKELKAEGIAIREVPSSIVCLKNLGRLSFE 196 (492)
Q Consensus 165 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~ 196 (492)
++|+.|+|++|.+..+| .+..+++|+.|++.
T Consensus 175 ~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 175 TKLQNLYLSKNHISDLR-ALAGLKNLDVLELF 205 (605)
T ss_dssp TTCCEEECCSSCCCBCG-GGTTCTTCSEEECC
T ss_pred CCCCEEECcCCCCCCCh-HHccCCCCCEEEcc
Confidence 88888888888777664 23333333333333
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=1e-15 Score=140.93 Aligned_cols=153 Identities=17% Similarity=0.182 Sum_probs=121.7
Q ss_pred cCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCcc-CCCCCCEE
Q 043408 20 QRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI-HLESLKTL 98 (492)
Q Consensus 20 ~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L 98 (492)
..+++|+.|++++|.+. .+|.+..+++|++|++++| .+..+ +.+..+++|++|++++|......+..+ .+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCTTGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCcc-ChHHHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 56788999999998765 6678888999999999998 44444 478889999999999987443344444 88999999
Q ss_pred EeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCccccccccccccccc
Q 043408 99 ILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIR 178 (492)
Q Consensus 99 ~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~ 178 (492)
++++|......+..+..+++|++|++++|..++.+| .+..+++|+.|++++|.. ..++ .+..+++|+.|++++|.+.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-HDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-CCCT-TGGGCSSCCEEEECBC---
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC-cChH-HhccCCCCCEEEeeCcccC
Confidence 999987666678889999999999999988677776 688899999999999754 4455 6788899999999999875
No 100
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.64 E-value=2.4e-17 Score=177.06 Aligned_cols=124 Identities=17% Similarity=0.095 Sum_probs=59.2
Q ss_pred CceEEEccCCCcc-----cccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccC---ccccccccCCcCC
Q 043408 1 NLVSLEMPHSSIK-----QLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSL---LETHSSIQYLNKL 72 (492)
Q Consensus 1 nL~~L~L~~s~i~-----~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l---~~~~~si~~L~~L 72 (492)
+|++|+++++++. .++..+..+++|+.|+|++|........+..+++|++|+++++... ...+..+..+++|
T Consensus 193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L 272 (592)
T 3ogk_B 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKL 272 (592)
T ss_dssp CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTC
T ss_pred CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccc
Confidence 4677788777775 3344455677778887777654331112445555666655532222 1222334444455
Q ss_pred cEEeccCCCCCcccCCcc-CCCCCCEEEeeCCCCCcc-cCccccCCCCCcEEEcc
Q 043408 73 IVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMK-LPSSIERLSSLILLNLR 125 (492)
Q Consensus 73 ~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~-lp~~i~~l~~L~~L~L~ 125 (492)
+.|+++++. ...+|..+ .+++|++|++++|..... ++..+..+++|++|++.
T Consensus 273 ~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 273 CRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred cccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 555544421 22233322 344555555555441111 11223444455555444
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=1e-15 Score=141.00 Aligned_cols=154 Identities=18% Similarity=0.250 Sum_probs=98.7
Q ss_pred CCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEE
Q 043408 43 SLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILL 122 (492)
Q Consensus 43 ~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L 122 (492)
+.+++|++|++++|. +..++ .+..+++|++|++++| .+..++....+++|++|++++|......+..+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 455677777777753 33555 5667777777777776 35555543467777777777755444456666777777777
Q ss_pred EcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCcCCc
Q 043408 123 NLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELP 202 (492)
Q Consensus 123 ~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp 202 (492)
++++|......|..+..+++|++|++++|...+.+| .++.+++|+.|++++|.+..++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--------------------- 175 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--------------------- 175 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT---------------------
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH---------------------
Confidence 777766666566666677777777777765455555 4666666666666666665543
Q ss_pred cccCCCCCCcEEecCCCccc
Q 043408 203 ECLGQLSSLRILFLDKNNFE 222 (492)
Q Consensus 203 ~~l~~l~~L~~L~L~~n~l~ 222 (492)
.+..+++|+.|++++|++.
T Consensus 176 -~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 176 -GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp -TGGGCSSCCEEEECBC---
T ss_pred -HhccCCCCCEEEeeCcccC
Confidence 3456677778888877754
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=2.4e-15 Score=161.90 Aligned_cols=171 Identities=26% Similarity=0.322 Sum_probs=144.7
Q ss_pred CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408 1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC 80 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~ 80 (492)
+|++|+++++.|..++ ++..+++|+.|+|++|.+.. ++.+..+++|++|+|++|. +..++ .+..+++|+.|+|++|
T Consensus 44 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N 119 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD-IKPLTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSLEHN 119 (605)
T ss_dssp TCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEECTTS
T ss_pred CCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCC-ChhhccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEecCC
Confidence 4788999999999986 68899999999999998654 4459999999999999975 44454 7899999999999998
Q ss_pred CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc
Q 043408 81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE 160 (492)
Q Consensus 81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~ 160 (492)
. +..++....+++|+.|+|++|. +..+ ..+..+++|+.|+|++|...+..| +..+++|+.|+|++|.. ..++ .
T Consensus 120 ~-l~~l~~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i-~~l~-~ 192 (605)
T 1m9s_A 120 G-ISDINGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-SDLR-A 192 (605)
T ss_dssp C-CCCCGGGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC-CBCG-G
T ss_pred C-CCCCccccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC-CCCh-H
Confidence 7 6667665589999999999975 4445 678999999999999998766555 89999999999999754 4554 5
Q ss_pred cCCccccccccccccccccccc
Q 043408 161 LGNLEALKELKAEGIAIREVPS 182 (492)
Q Consensus 161 l~~l~~L~~L~l~~~~i~~lp~ 182 (492)
+..+++|+.|++++|.+...|.
T Consensus 193 l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 193 LAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp GTTCTTCSEEECCSEEEECCCC
T ss_pred HccCCCCCEEEccCCcCcCCcc
Confidence 8899999999999999987664
No 103
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.62 E-value=3.7e-17 Score=175.57 Aligned_cols=240 Identities=17% Similarity=0.051 Sum_probs=149.7
Q ss_pred CceEEEccCCCccc-----ccccccCCCCCcEEEccCCCCCCC----CCC-CCCCCCccEEEeeCcccCccccccccCCc
Q 043408 1 NLVSLEMPHSSIKQ-----LWKGVQRLVNLKHLNLSHSEHLTK----IPD-LSLATNLESLTFRGCTSLLETHSSIQYLN 70 (492)
Q Consensus 1 nL~~L~L~~s~i~~-----l~~~~~~l~~L~~L~Ls~~~~l~~----~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~ 70 (492)
+|++|+|++|.+.. +......+++|+.|+|++|.+... ++. +.++++|++|+|++|.. ..++..+..++
T Consensus 165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~~~~ 243 (592)
T 3ogk_B 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFKAAA 243 (592)
T ss_dssp TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHHHHHCT
T ss_pred CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHHHhhhh
Confidence 58999999998753 333456789999999999876521 222 45789999999999754 45778888999
Q ss_pred CCcEEeccCCCCCc---ccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCc-cccccCCCCCCCE
Q 043408 71 KLIVLNLEHCRSLT---SLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEG-LPSKICKLKSLER 145 (492)
Q Consensus 71 ~L~~L~L~~~~~l~---~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~i~~l~~L~~ 145 (492)
+|+.|+++.+.... ..+..+ .+++|+.|+++++ ....+|..+..+++|++|++++|..... ++..+..+++|+.
T Consensus 244 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~ 322 (592)
T 3ogk_B 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322 (592)
T ss_dssp TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE
T ss_pred HHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE
Confidence 99999998644331 122222 7889999999884 4566788888999999999999884332 2234577788888
Q ss_pred EeccCCCCCCCcccccCCccccccccccc-----------cccc--ccccccccCCCCcccccCCCcC---CccccC-CC
Q 043408 146 LNLSGCSNLQRLPNELGNLEALKELKAEG-----------IAIR--EVPSSIVCLKNLGRLSFESFKE---LPECLG-QL 208 (492)
Q Consensus 146 L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~-----------~~i~--~lp~~~~~l~~L~~L~l~~~~~---lp~~l~-~l 208 (492)
|+++++.....++.....+++|++|++++ +.+. .++.....+++|+.|++..+.- .+..+. .+
T Consensus 323 L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 402 (592)
T 3ogk_B 323 LETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL 402 (592)
T ss_dssp EEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHC
T ss_pred EeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhC
Confidence 88874322223333345566677777762 3333 2223334456666666622210 111222 25
Q ss_pred CCCcEEecC----CCcccc------cchhhhcCccccccccccc
Q 043408 209 SSLRILFLD----KNNFER------IPESIICLSHLYWLRISYC 242 (492)
Q Consensus 209 ~~L~~L~L~----~n~l~~------lp~~l~~l~~L~~L~L~~c 242 (492)
++|+.|+++ .|.++. ++..+..+++|+.|++++|
T Consensus 403 ~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~ 446 (592)
T 3ogk_B 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446 (592)
T ss_dssp CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECC
T ss_pred CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecC
Confidence 555555554 333443 2223444555555555443
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=1.5e-14 Score=134.16 Aligned_cols=117 Identities=20% Similarity=0.235 Sum_probs=65.3
Q ss_pred ccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcc
Q 043408 113 IERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGR 192 (492)
Q Consensus 113 i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~ 192 (492)
+..+++|++|++++|...+..+..+..+++|++|++++|...+..+..++.+++|+.|++++|.+..++.
T Consensus 72 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---------- 141 (208)
T 2o6s_A 72 FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD---------- 141 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----------
T ss_pred cCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH----------
Confidence 3445555555555554433333334555556666665543333223335556666666666665554443
Q ss_pred cccCCCcCCccccCCCCCCcEEecCCCcccccchhhhcCccccccccccccccccCCCCCccc
Q 043408 193 LSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPELPCDL 255 (492)
Q Consensus 193 L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~sL 255 (492)
..+..+++|+.|++++|.+. ..+++|++|+++.|..-+.+|+...++
T Consensus 142 ----------~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 142 ----------GVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp ----------TTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ----------HHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 22455677777777777654 234577777777777666777654444
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=2.3e-15 Score=145.25 Aligned_cols=169 Identities=22% Similarity=0.273 Sum_probs=133.0
Q ss_pred ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408 2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR 81 (492)
Q Consensus 2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~ 81 (492)
++.+++.+++++.++ .+..+++|++|++++|.+ +.++.+..+++|++|+|++|. +..++. +..+++|+.|++++|.
T Consensus 21 l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNI-QSLAGMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCC-CCCTTGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSSC
T ss_pred HHHHHhcCCCccccc-chhhcCcCcEEECcCCCc-ccchHHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCCc
Confidence 345677888888887 678899999999999865 467788899999999999864 555665 8899999999999986
Q ss_pred CCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCccccc
Q 043408 82 SLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNEL 161 (492)
Q Consensus 82 ~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l 161 (492)
++.++.... ++|++|++++|. +..++ .+..+++|++|++++|...+ ++ .+..+++|+.|++++|.... + ..+
T Consensus 97 -l~~l~~~~~-~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~-~-~~l 168 (263)
T 1xeu_A 97 -LKNLNGIPS-ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITN-T-GGL 168 (263)
T ss_dssp -CSCCTTCCC-SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCB-C-TTS
T ss_pred -cCCcCcccc-CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcc-h-HHh
Confidence 666776445 899999999964 44454 58889999999999887544 44 57888899999998875443 3 567
Q ss_pred CCccccccccccccccccccc
Q 043408 162 GNLEALKELKAEGIAIREVPS 182 (492)
Q Consensus 162 ~~l~~L~~L~l~~~~i~~lp~ 182 (492)
..+++|+.|++++|.+...|.
T Consensus 169 ~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp TTCCCCCEEEEEEEEEECCCE
T ss_pred ccCCCCCEEeCCCCcccCCcc
Confidence 888888888888888776553
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.58 E-value=2.1e-14 Score=134.66 Aligned_cols=145 Identities=17% Similarity=0.161 Sum_probs=76.8
Q ss_pred EEEccCCCcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCC
Q 043408 4 SLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRS 82 (492)
Q Consensus 4 ~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~ 82 (492)
.+++++++++.+|..+. ++|+.|+|++|.+....+ .+..+++|++|+|++|......|..+..+++|++|+|++|.
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~- 91 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK- 91 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-
Confidence 45666677777765544 567777777766544333 36666777777777655444445566666666666666654
Q ss_pred CcccCCcc--CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCC
Q 043408 83 LTSLSTSI--HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGC 151 (492)
Q Consensus 83 l~~lp~~~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c 151 (492)
++.+|... .+++|++|++++|......|..+..+++|++|+|++|...+..+..+..+++|+.|++++|
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 44444432 4555555555554332222334444444444444444433333333444444444444443
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.57 E-value=5.2e-14 Score=132.79 Aligned_cols=145 Identities=24% Similarity=0.255 Sum_probs=86.3
Q ss_pred EEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccc-cccCCcCCcEEeccCCC
Q 043408 4 SLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHS-SIQYLNKLIVLNLEHCR 81 (492)
Q Consensus 4 ~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~-si~~L~~L~~L~L~~~~ 81 (492)
.++.+++++..+|.++. ++|++|+|++|.+....|. +..+++|++|+|++|.. ..++. .+..+++|++|+|++|.
T Consensus 23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCc
Confidence 46666677777766554 6777777777766555443 66677777777776543 44443 34666777777777664
Q ss_pred CCcccCCcc--CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCC
Q 043408 82 SLTSLSTSI--HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSN 153 (492)
Q Consensus 82 ~l~~lp~~~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~ 153 (492)
++.++... .+++|++|++++| .+..+|..+..+++|++|+|++|......+..+..+++|+.|++++|..
T Consensus 100 -l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 100 -LTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred -CCccChhHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 44444432 5666666666664 3445666666666666666666554433334455566666666665543
No 108
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.57 E-value=9.6e-17 Score=172.28 Aligned_cols=199 Identities=21% Similarity=0.208 Sum_probs=95.2
Q ss_pred CCCCccEEEeeCcccCcccccccc-CCcCCcEEeccCCCCCcc--cCCcc-CCCCCCEEEeeCCCCCcc----cCccccC
Q 043408 44 LATNLESLTFRGCTSLLETHSSIQ-YLNKLIVLNLEHCRSLTS--LSTSI-HLESLKTLILSGCSNLMK----LPSSIER 115 (492)
Q Consensus 44 ~~~nL~~L~L~~c~~l~~~~~si~-~L~~L~~L~L~~~~~l~~--lp~~~-~l~~L~~L~L~~c~~l~~----lp~~i~~ 115 (492)
.+++|++|+|++|......+..+. .+++|++|++++|..+.. ++... ++++|++|++++|..... ++.....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 345666666666654333333343 456666666666643332 33222 466666666666542111 2222235
Q ss_pred CCCCcEEEcccCC-CCC--ccccccCCCCCCCEEeccCCCCCCCcccccCCccccccccccc-------ccccccccccc
Q 043408 116 LSSLILLNLRNCS-RLE--GLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEG-------IAIREVPSSIV 185 (492)
Q Consensus 116 l~~L~~L~L~~~~-~l~--~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~-------~~i~~lp~~~~ 185 (492)
+++|++|++++|. ... .++..+..+++|++|++++|...+.++..++.+++|+.|++++ +.+..++..+.
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 5566666666654 110 1112223356666666666644444555555556666665332 22334444445
Q ss_pred cCCCCccc-ccCCCc--CCccccCCCCCCcEEecCCCccc--ccchhhhcCccccccccccc
Q 043408 186 CLKNLGRL-SFESFK--ELPECLGQLSSLRILFLDKNNFE--RIPESIICLSHLYWLRISYC 242 (492)
Q Consensus 186 ~l~~L~~L-~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~c 242 (492)
++++|+.| .+.+.. .++..+..+++|+.|+|++|.++ .+...+..+++|+.|++++|
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 55555554 222211 13333334455555555555543 12223444555555555554
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.55 E-value=3.6e-14 Score=133.13 Aligned_cols=131 Identities=15% Similarity=0.114 Sum_probs=72.5
Q ss_pred CccEEEeeCcccCcccc-ccccCCcCCcEEeccCCCCCcccCC-cc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEE
Q 043408 47 NLESLTFRGCTSLLETH-SSIQYLNKLIVLNLEHCRSLTSLST-SI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLN 123 (492)
Q Consensus 47 nL~~L~L~~c~~l~~~~-~si~~L~~L~~L~L~~~~~l~~lp~-~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~ 123 (492)
.+++|+|++|......+ ..+..+++|++|+|++|. ++.++. .+ ++++|++|++++|......+..+.++++|++|+
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 34455555533222212 124455555555555544 333332 22 555666666666443333333466666666666
Q ss_pred cccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCccccccccccccccc
Q 043408 124 LRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIR 178 (492)
Q Consensus 124 L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~ 178 (492)
|++|...+..|..+..+++|++|+|++|...+..|..++.+++|+.|++++|.+.
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 6666666555666666677777777766555444666666777777777776654
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.55 E-value=2.7e-14 Score=144.22 Aligned_cols=122 Identities=19% Similarity=0.182 Sum_probs=57.7
Q ss_pred EEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC-CC-CCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408 4 SLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LS-LATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR 81 (492)
Q Consensus 4 ~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~-~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~ 81 (492)
.+++++++++.+|..+. +.++.|+|++|.+....+. +. .+++|++|+|++|......+..+..+++|++|+|++|.
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 45555556665554433 2455666666554433333 33 55556666665543332223345555555555555544
Q ss_pred CCcccCCc-c-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCC
Q 043408 82 SLTSLSTS-I-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCS 128 (492)
Q Consensus 82 ~l~~lp~~-~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~ 128 (492)
++.++.. + .+++|++|+|++|......+..+.++++|++|+|++|.
T Consensus 100 -l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 100 -LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp -CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred -CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc
Confidence 3333332 1 44555555555433322223344444444444444443
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=3.2e-17 Score=175.31 Aligned_cols=190 Identities=20% Similarity=0.227 Sum_probs=113.7
Q ss_pred cCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcc-------------cCccccccccCCcCCcEEe-ccCCCCCc
Q 043408 20 QRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCT-------------SLLETHSSIQYLNKLIVLN-LEHCRSLT 84 (492)
Q Consensus 20 ~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~-------------~l~~~~~si~~L~~L~~L~-L~~~~~l~ 84 (492)
..+++|+.|+|++|.+. .+|. ++++++|++|++++|. .....|..++.+++|+.|+ ++.+. +.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cc
Confidence 34555666666655432 3332 5555566666554432 2334455566666666666 33321 11
Q ss_pred ccCCc---------cCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCC
Q 043408 85 SLSTS---------IHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQ 155 (492)
Q Consensus 85 ~lp~~---------~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~ 155 (492)
.++.. +....|+.|++++| .+..+|. ++.+++|+.|+|++|... .+|..++.+++|+.|+|++|...
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~- 499 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE- 499 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-
T ss_pred hhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC-
Confidence 11110 01234777777775 4455665 777777777777776554 66777777777777777775433
Q ss_pred CcccccCCccccccccccccccccc--ccccccCCCCcccccCCCc--CCccc----cCCCCCCcEEec
Q 043408 156 RLPNELGNLEALKELKAEGIAIREV--PSSIVCLKNLGRLSFESFK--ELPEC----LGQLSSLRILFL 216 (492)
Q Consensus 156 ~lp~~l~~l~~L~~L~l~~~~i~~l--p~~~~~l~~L~~L~l~~~~--~lp~~----l~~l~~L~~L~L 216 (492)
.+| .++.+++|+.|++++|.++.+ |..+..+++|+.|++++|. .+|.. +..+++|+.|++
T Consensus 500 ~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 500 NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 466 677777777777777777766 6777777777777777765 23332 234778887764
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.54 E-value=3.7e-17 Score=174.82 Aligned_cols=192 Identities=17% Similarity=0.188 Sum_probs=114.3
Q ss_pred CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcE
Q 043408 42 LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLIL 121 (492)
Q Consensus 42 l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~ 121 (492)
+...++|+.|+|++| .+..+|.+++.+++|+.|++++|..+..++... ..+......|..++++++|+.
T Consensus 345 ~~~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll----------~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 345 SATDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLM----------RALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp CSTTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----------HHHCTGGGHHHHHHHHHHHHH
T ss_pred cccCccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHH----------HhcccccCCHHHHHHHHhccc
Confidence 466788899999884 456889999999999999987654222222100 001112233444555555555
Q ss_pred EE-cccCCCCCcccc------ccCC--CCCCCEEeccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcc
Q 043408 122 LN-LRNCSRLEGLPS------KICK--LKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGR 192 (492)
Q Consensus 122 L~-L~~~~~l~~lp~------~i~~--l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~ 192 (492)
|+ ++.+.. ..++. .+.. ...|+.|+|++| .+..+|. ++.+++|+.|++++|.++.+|..++.+++|+.
T Consensus 414 L~~l~~n~~-~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 490 (567)
T 1dce_A 414 VDPMRAAYL-DDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEV 490 (567)
T ss_dssp HCGGGHHHH-HHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCE
T ss_pred Ccchhhccc-chhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCE
Confidence 55 222210 00000 0000 123666666665 3334555 66666666666666666666666666666666
Q ss_pred cccCCCc--CCccccCCCCCCcEEecCCCccccc--chhhhcCccccccccccccccccCC
Q 043408 193 LSFESFK--ELPECLGQLSSLRILFLDKNNFERI--PESIICLSHLYWLRISYCERLKSLP 249 (492)
Q Consensus 193 L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~L~~c~~l~~lp 249 (492)
|++++|. .+| .++.+++|+.|+|++|.++.+ |..+..+++|+.|+|++|+ +..+|
T Consensus 491 L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~ 549 (567)
T 1dce_A 491 LQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEE 549 (567)
T ss_dssp EECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred EECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCc
Confidence 6666654 355 667777777777777777766 6777777777777777765 34443
No 113
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.54 E-value=3e-16 Score=168.45 Aligned_cols=237 Identities=19% Similarity=0.195 Sum_probs=148.7
Q ss_pred CceEEEccCCC-cccc------c---------ccccCCCCCcEEEccCCCCCCCCC-CCC-CCCCccEEEeeCcccCcc-
Q 043408 1 NLVSLEMPHSS-IKQL------W---------KGVQRLVNLKHLNLSHSEHLTKIP-DLS-LATNLESLTFRGCTSLLE- 61 (492)
Q Consensus 1 nL~~L~L~~s~-i~~l------~---------~~~~~l~~L~~L~Ls~~~~l~~~p-~l~-~~~nL~~L~L~~c~~l~~- 61 (492)
+|++|+++++. +..+ | .....+++|+.|+|++|.+....+ .+. .+++|++|+|++|..+..
T Consensus 67 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 146 (594)
T 2p1m_B 67 KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD 146 (594)
T ss_dssp TCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHH
T ss_pred CceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHH
Confidence 46788888764 2211 1 112468899999999987543322 243 589999999999976554
Q ss_pred -ccccccCCcCCcEEeccCCCCCcc-----cCCcc-CCCCCCEEEeeCCC-CCc--ccCccccCCCCCcEEEcccCCCCC
Q 043408 62 -THSSIQYLNKLIVLNLEHCRSLTS-----LSTSI-HLESLKTLILSGCS-NLM--KLPSSIERLSSLILLNLRNCSRLE 131 (492)
Q Consensus 62 -~~~si~~L~~L~~L~L~~~~~l~~-----lp~~~-~l~~L~~L~L~~c~-~l~--~lp~~i~~l~~L~~L~L~~~~~l~ 131 (492)
++.....+++|++|++++|. +.. ++... .+++|++|++++|. .+. .+...+.++++|++|++++|...+
T Consensus 147 ~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 147 GLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 45555689999999999987 322 33323 68899999999976 121 223334668999999999987666
Q ss_pred ccccccCCCCCCCEEeccCCCC------CCCcccccCCccccccc-ccccccccccccccccCCCCcccccCCCcC----
Q 043408 132 GLPSKICKLKSLERLNLSGCSN------LQRLPNELGNLEALKEL-KAEGIAIREVPSSIVCLKNLGRLSFESFKE---- 200 (492)
Q Consensus 132 ~lp~~i~~l~~L~~L~Ls~c~~------l~~lp~~l~~l~~L~~L-~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~---- 200 (492)
.+|..+..+++|+.|++++|.. ...++..++++++|+.| .+.+.....++..+..+++|+.|++++|.-
T Consensus 226 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~ 305 (594)
T 2p1m_B 226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD 305 (594)
T ss_dssp HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHH
T ss_pred HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHH
Confidence 6888888889999998776542 11233344555555555 344433344554445556666666666551
Q ss_pred CccccCCCCCCcEEecCCCccc--ccchhhhcCcccccccc
Q 043408 201 LPECLGQLSSLRILFLDKNNFE--RIPESIICLSHLYWLRI 239 (492)
Q Consensus 201 lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L 239 (492)
+...+..+++|+.|++++| +. .++.....+++|+.|++
T Consensus 306 l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 306 LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence 1112345566666666655 32 23333334556666655
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.53 E-value=5.9e-14 Score=141.66 Aligned_cols=135 Identities=19% Similarity=0.174 Sum_probs=65.6
Q ss_pred CCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccc
Q 043408 92 LESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELK 171 (492)
Q Consensus 92 l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 171 (492)
+++|++|++++|......+..+.++++|++|+|++|......+..+..+++|++|+|++|......|..+..+++|+.|+
T Consensus 63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 142 (361)
T 2xot_A 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence 44444444444322211123345555555555555444333333445555555555555443333344555555556666
Q ss_pred cccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccc-hhhhcCcc--cccccccccc
Q 043408 172 AEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIP-ESIICLSH--LYWLRISYCE 243 (492)
Q Consensus 172 l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~--L~~L~L~~c~ 243 (492)
+++|.+..+|..+. ..+..+++|+.|+|++|+++.+| ..+..++. |+.|+|++|+
T Consensus 143 L~~N~l~~l~~~~~-----------------~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 143 LSQNQISRFPVELI-----------------KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCSSCCCSCCGGGT-----------------C----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCCCcCCeeCHHHh-----------------cCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 65555555543210 01134566666666666666665 34555554 3566666654
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=1.7e-13 Score=129.23 Aligned_cols=148 Identities=21% Similarity=0.174 Sum_probs=75.6
Q ss_pred cEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCC
Q 043408 73 IVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCS 152 (492)
Q Consensus 73 ~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~ 152 (492)
+.++.+++ .+..+|..+ .++|++|++++|......|..+.++++|++|+|++|......+..+..+++|++|+|++|.
T Consensus 22 ~~v~c~~~-~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSK-RHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTS-CCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCC-CcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 34444442 244555432 2555666666544333334555666666666666655433333344566666666666654
Q ss_pred CCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCc--CCc-cccCCCCCCcEEecCCCccc
Q 043408 153 NLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELP-ECLGQLSSLRILFLDKNNFE 222 (492)
Q Consensus 153 ~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp-~~l~~l~~L~~L~L~~n~l~ 222 (492)
.....+..++.+++|+.|++++|.+..+|..+..+++|+.|+++++. .++ ..+..+++|+.|+|++|.+.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 33333334566666666666666666665544444444444443332 122 23445555666666666554
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=1.3e-13 Score=132.85 Aligned_cols=145 Identities=26% Similarity=0.313 Sum_probs=121.3
Q ss_pred CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408 1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC 80 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~ 80 (492)
+|++|++++|+|+.++ ++..+++|+.|+|++|.+.. ++.+..+++|++|+|++|. +..++... . .+|+.|++++|
T Consensus 42 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~-~~~l~~l~~L~~L~L~~N~-l~~l~~~~-~-~~L~~L~L~~N 116 (263)
T 1xeu_A 42 GVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISD-LSPLKDLTKLEELSVNRNR-LKNLNGIP-S-ACLSRLFLDNN 116 (263)
T ss_dssp TCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSC-CSCCTTCC-C-SSCCEEECCSS
T ss_pred cCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCC-ChhhccCCCCCEEECCCCc-cCCcCccc-c-CcccEEEccCC
Confidence 5889999999999987 78899999999999998654 4449999999999999975 44555433 3 99999999998
Q ss_pred CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCC
Q 043408 81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQ 155 (492)
Q Consensus 81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~ 155 (492)
. +..++....+++|++|++++|. +..++ .+..+++|++|++++|...+. ..+..+++|+.|++++|....
T Consensus 117 ~-l~~~~~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 117 E-LRDTDSLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp C-CSBSGGGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred c-cCCChhhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 6 7777765599999999999965 55565 789999999999999987665 678899999999999975543
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.49 E-value=4.9e-13 Score=125.33 Aligned_cols=148 Identities=20% Similarity=0.172 Sum_probs=93.4
Q ss_pred EEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC--CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408 4 SLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD--LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR 81 (492)
Q Consensus 4 ~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~--l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~ 81 (492)
.+++++++++.+|..+. ..+++|+|++|.+....+. +..+++|++|+|++|......+..+..+++|++|+|++|.
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 56677777777765543 3456777777765544332 5667777777777755433333466677777777777765
Q ss_pred CCcccCCc-c-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCC
Q 043408 82 SLTSLSTS-I-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNL 154 (492)
Q Consensus 82 ~l~~lp~~-~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l 154 (492)
+..++.. + .+++|++|++++|......|..+..+++|++|+|++|...+..|..+..+++|+.|++++|...
T Consensus 93 -l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 -LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp -CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred -cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 4444432 2 6777777777775544444566677777777777777666666666777777777777776543
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=4.8e-13 Score=125.38 Aligned_cols=147 Identities=21% Similarity=0.233 Sum_probs=89.1
Q ss_pred cEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCccc-CCcc-CCCCCCEEEeeC
Q 043408 26 KHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSL-STSI-HLESLKTLILSG 102 (492)
Q Consensus 26 ~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~l-p~~~-~l~~L~~L~L~~ 102 (492)
+.++++++.+ +.+|. +. ++|++|+|++|......+..+..+++|+.|+|++|. +..+ |..+ ++++|++|++++
T Consensus 14 ~~v~c~~~~l-~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGL-TEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCC-SSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCc-CcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCC
Confidence 5677777653 34443 32 677888887765443333466777777777777765 3333 4333 667777777776
Q ss_pred CCCCcccCcc-ccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccc
Q 043408 103 CSNLMKLPSS-IERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAI 177 (492)
Q Consensus 103 c~~l~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i 177 (492)
|. +..+|.. +.++++|++|+|++|...+..|..+..+++|+.|+|++|...+..+..+..+++|+.|++++|.+
T Consensus 90 N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 90 NK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred Cc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 43 3444443 46666777777776666555566666666666666666544443344466666666666666654
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.45 E-value=2.7e-14 Score=157.10 Aligned_cols=116 Identities=22% Similarity=0.210 Sum_probs=56.4
Q ss_pred CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCc
Q 043408 42 LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLI 120 (492)
Q Consensus 42 l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~ 120 (492)
+..+++|+.|+|++|. +..+|..+..+++|++|+|++|. +..+|..+ ++++|++|+|++|. +..+|..++++++|+
T Consensus 220 ~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLK 296 (727)
T ss_dssp --CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCS
T ss_pred hccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCC
Confidence 4455555555555543 22445455555555555555543 33444433 45555555555533 334555555555555
Q ss_pred EEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCccccc
Q 043408 121 LLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNEL 161 (492)
Q Consensus 121 ~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l 161 (492)
+|+|++|.+ +.+|..++.+++|+.|+|++|...+.+|..+
T Consensus 297 ~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 297 YFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp EEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred EEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 555555432 3445445555555555555544444444443
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=1.4e-13 Score=123.02 Aligned_cols=136 Identities=23% Similarity=0.271 Sum_probs=83.8
Q ss_pred CCCCCEEEeeCCCCC-cccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCccccccc
Q 043408 92 LESLKTLILSGCSNL-MKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKEL 170 (492)
Q Consensus 92 l~~L~~L~L~~c~~l-~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L 170 (492)
.++|++|++++|... ..+|..+..+++|++|++++|..... ..+..+++|++|++++|...+.+|..++.+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 345555555554422 24555556666666666666553332 455666666666666665544455555556666666
Q ss_pred ccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccch----hhhcCccccccccccccccc
Q 043408 171 KAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPE----SIICLSHLYWLRISYCERLK 246 (492)
Q Consensus 171 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~L~~c~~l~ 246 (492)
++++|.++.+|. +..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|. +.
T Consensus 101 ~Ls~N~l~~~~~-------------------~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~ 160 (168)
T 2ell_A 101 NLSGNKLKDIST-------------------LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQ 160 (168)
T ss_dssp ECBSSSCCSSGG-------------------GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SC
T ss_pred eccCCccCcchh-------------------HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hh
Confidence 666666665442 1245667778888888888777765 67778888888888864 44
Q ss_pred cCC
Q 043408 247 SLP 249 (492)
Q Consensus 247 ~lp 249 (492)
++|
T Consensus 161 ~~~ 163 (168)
T 2ell_A 161 EAP 163 (168)
T ss_dssp BCC
T ss_pred hcc
Confidence 444
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.43 E-value=6.1e-13 Score=118.86 Aligned_cols=135 Identities=25% Similarity=0.232 Sum_probs=75.9
Q ss_pred CCccEEEeeCcccC-ccccccccCCcCCcEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEc
Q 043408 46 TNLESLTFRGCTSL-LETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNL 124 (492)
Q Consensus 46 ~nL~~L~L~~c~~l-~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L 124 (492)
++|++|++++|... ..+|..+..+++|++|++++|. +..++....+++|++|++++|.....+|..+..+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 44444444444322 2444444555555555555544 333322225666666666665443335555666677777777
Q ss_pred ccCCCCCc-cccccCCCCCCCEEeccCCCCCCCccc----ccCCccccccccccccccccccc
Q 043408 125 RNCSRLEG-LPSKICKLKSLERLNLSGCSNLQRLPN----ELGNLEALKELKAEGIAIREVPS 182 (492)
Q Consensus 125 ~~~~~l~~-lp~~i~~l~~L~~L~Ls~c~~l~~lp~----~l~~l~~L~~L~l~~~~i~~lp~ 182 (492)
++|...+. .+..+..+++|+.|++++|... .+|. .+..+++|+.|++++|.+.++|.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 77654332 1256667777777777776443 3333 56777777777777777766664
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=1.6e-13 Score=120.04 Aligned_cols=128 Identities=22% Similarity=0.215 Sum_probs=79.3
Q ss_pred CCCCEEEeeCCCCC-cccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccc
Q 043408 93 ESLKTLILSGCSNL-MKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELK 171 (492)
Q Consensus 93 ~~L~~L~L~~c~~l-~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 171 (492)
++|++|++++|... +.+|..+..+++|++|++++|...+. ..++.+++|++|++++|...+.+|..++.+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555554432 24555555666666666666544333 4455666666666666554444555555566666666
Q ss_pred cccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccch----hhhcCcccccccccc
Q 043408 172 AEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPE----SIICLSHLYWLRISY 241 (492)
Q Consensus 172 l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~L~~ 241 (492)
+++|.++.++. +..++.+++|+.|++++|.++.+|. .+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~-------------------~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLST-------------------IEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHH-------------------HGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHH-------------------HHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 66666554431 1345677888888888888887765 677888888888763
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.38 E-value=5.5e-13 Score=116.67 Aligned_cols=125 Identities=26% Similarity=0.238 Sum_probs=78.8
Q ss_pred CCCCcEEEccCCCCC-CCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCcc-CCCCCCEE
Q 043408 22 LVNLKHLNLSHSEHL-TKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI-HLESLKTL 98 (492)
Q Consensus 22 l~~L~~L~Ls~~~~l-~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L 98 (492)
.++|+.|++++|.+. ..+|. +..+++|++|++++|. +..+ ..++.+++|++|++++|.....+|..+ .+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 466777777777655 34443 5667777777777653 3333 556667777777777765333355444 47777777
Q ss_pred EeeCCCCCcccC--ccccCCCCCcEEEcccCCCCCccc---cccCCCCCCCEEecc
Q 043408 99 ILSGCSNLMKLP--SSIERLSSLILLNLRNCSRLEGLP---SKICKLKSLERLNLS 149 (492)
Q Consensus 99 ~L~~c~~l~~lp--~~i~~l~~L~~L~L~~~~~l~~lp---~~i~~l~~L~~L~Ls 149 (492)
++++|. +..++ ..+..+++|++|++++|...+..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777754 33333 667777888888888775544333 356777888888775
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.38 E-value=2.5e-13 Score=149.39 Aligned_cols=149 Identities=23% Similarity=0.220 Sum_probs=84.7
Q ss_pred cCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccccccccccCC
Q 043408 109 LPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLK 188 (492)
Q Consensus 109 lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~ 188 (492)
.+..+..+++|+.|+|++|... .+|..+..+++|++|+|++|... .+|..++.+++|+.|+|++|.++.+|..++.++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF 293 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGT
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCC
Confidence 3445566666666666665543 55555556666666666665333 566666666666666666666666666666666
Q ss_pred CCcccccCCCc--CCccccCCCCCCcEEecCCCccc-ccchhhhcCc-cccccccccccccccCCCCCcccceeeccc
Q 043408 189 NLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFE-RIPESIICLS-HLYWLRISYCERLKSLPELPCDLSDIEAHC 262 (492)
Q Consensus 189 ~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~-~L~~L~L~~c~~l~~lp~l~~sL~~L~~~~ 262 (492)
+|+.|++++|. .+|..++.+++|+.|+|++|.++ .+|..+..+. .+..|++++|.....+| ..++.|++..
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p---~~l~~l~l~~ 368 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP---HERRFIEINT 368 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC---CC--------
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc---cccceeEeec
Confidence 66666666654 46667788888888888888887 4555554432 22346677765544444 3455555443
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.37 E-value=3.8e-12 Score=116.55 Aligned_cols=92 Identities=20% Similarity=0.103 Sum_probs=54.2
Q ss_pred ccCCcCCcEEeccCCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCC
Q 043408 66 IQYLNKLIVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLE 144 (492)
Q Consensus 66 i~~L~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~ 144 (492)
++.+++|++|+|++|......|..+ ++++|++|++++|......+..+.++++|++|+|++|...+..|..+..+++|+
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 4455555555555544222223323 555555555555443333334466777777777777777666677777778888
Q ss_pred EEeccCCCCCCCc
Q 043408 145 RLNLSGCSNLQRL 157 (492)
Q Consensus 145 ~L~Ls~c~~l~~l 157 (492)
+|++++|......
T Consensus 130 ~L~L~~N~l~c~c 142 (192)
T 1w8a_A 130 SLNLASNPFNCNC 142 (192)
T ss_dssp EEECTTCCBCCSG
T ss_pred EEEeCCCCccCcC
Confidence 8888877655443
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=4.7e-12 Score=114.12 Aligned_cols=131 Identities=17% Similarity=0.132 Sum_probs=77.3
Q ss_pred cCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc-cCCccccc
Q 043408 90 IHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE-LGNLEALK 168 (492)
Q Consensus 90 ~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~ 168 (492)
.++.+|++|++++|. +..++......++|++|++++|...+ + ..+..+++|++|++++|.. ..+|.. ++.+++|+
T Consensus 16 ~~~~~L~~L~l~~n~-l~~i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCC-CchhHHhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcc-cccCcchhhcCCCCC
Confidence 356666667766653 33443322222366666666654433 2 3455555555555555432 233322 24555555
Q ss_pred ccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccchh----hhcCcccccccccccc
Q 043408 169 ELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPES----IICLSHLYWLRISYCE 243 (492)
Q Consensus 169 ~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~----l~~l~~L~~L~L~~c~ 243 (492)
.|++++|.+..+|. ...+..+++|+.|++++|.++.+|.. +..+++|+.|++++|.
T Consensus 92 ~L~L~~N~i~~~~~-------------------~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSLVELGD-------------------LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCCCCGGG-------------------GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCcCCcchh-------------------hHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 55555555544432 01456788888899999988888774 7888888888888865
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.30 E-value=2.1e-11 Score=111.68 Aligned_cols=127 Identities=23% Similarity=0.261 Sum_probs=98.2
Q ss_pred cEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCC
Q 043408 73 IVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCS 152 (492)
Q Consensus 73 ~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~ 152 (492)
++++++++. ++.+|..+ .++|++|++++| .+..+|..+.++++|++|+|++|...+..+..+..+++|++|+|++|.
T Consensus 13 ~~l~~~~~~-l~~ip~~~-~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKGI-PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSC-CSSCCSCC-CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCC-CCcCCCCC-CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 467776654 66777644 367888888885 456788888889999999999888777667778889999999999876
Q ss_pred CCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCccc
Q 043408 153 NLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFE 222 (492)
Q Consensus 153 ~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~ 222 (492)
.....+..++.+++|+.|++++|.+..+|. ..+..+++|+.|+|++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~--------------------~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPE--------------------GAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCT--------------------TTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeCh--------------------hhhhcCccccEEEeCCCCee
Confidence 555555678888889999999888887764 23566788888999998875
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.28 E-value=7.2e-12 Score=112.88 Aligned_cols=129 Identities=19% Similarity=0.267 Sum_probs=94.0
Q ss_pred ccCCCCCcEEEccCCCCCCCCCCCCCCC-CccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCcc--CCCCC
Q 043408 19 VQRLVNLKHLNLSHSEHLTKIPDLSLAT-NLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI--HLESL 95 (492)
Q Consensus 19 ~~~l~~L~~L~Ls~~~~l~~~p~l~~~~-nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~--~l~~L 95 (492)
+..+.+|+.|++++|.+. .+|.+..+. +|++|+|++|. +..+ ..++.+++|++|++++|. +..+|... .+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCC
Confidence 455778888888888654 456665554 88888888864 3344 567788888888888876 56666433 78888
Q ss_pred CEEEeeCCCCCcccCc--cccCCCCCcEEEcccCCCCCccccc----cCCCCCCCEEeccCCCC
Q 043408 96 KTLILSGCSNLMKLPS--SIERLSSLILLNLRNCSRLEGLPSK----ICKLKSLERLNLSGCSN 153 (492)
Q Consensus 96 ~~L~L~~c~~l~~lp~--~i~~l~~L~~L~L~~~~~l~~lp~~----i~~l~~L~~L~Ls~c~~ 153 (492)
++|++++|. +..+|. .+..+++|++|++++|... .+|.. +..+++|+.|++++|..
T Consensus 91 ~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 888888854 466666 6888888888888887654 45553 77888899998887643
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.25 E-value=6.8e-11 Score=108.12 Aligned_cols=123 Identities=20% Similarity=0.207 Sum_probs=54.7
Q ss_pred EEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC--CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408 4 SLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD--LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR 81 (492)
Q Consensus 4 ~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~--l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~ 81 (492)
.+++++++++.+|..+.. +|++|+|++|.+....+. +..+++|++|+|++|......|..+..+++|++|+|++|.
T Consensus 12 ~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp EEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 344555555544443322 455555555443333222 4444555555555443333334444445555555555443
Q ss_pred CCcccCCc-c-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCC
Q 043408 82 SLTSLSTS-I-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSR 129 (492)
Q Consensus 82 ~l~~lp~~-~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~ 129 (492)
+..++.. + .+++|++|++++|......|..+..+++|++|+|++|..
T Consensus 90 -l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 90 -IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp -CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred -CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 2222221 2 444555555555433333344444455555555554443
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.25 E-value=1.1e-11 Score=123.20 Aligned_cols=231 Identities=14% Similarity=0.115 Sum_probs=114.8
Q ss_pred CceEEEccCCCcc--------------------ccc-ccccC--------CCCCcEEEccCCCCCCCCCC--CCCCCCcc
Q 043408 1 NLVSLEMPHSSIK--------------------QLW-KGVQR--------LVNLKHLNLSHSEHLTKIPD--LSLATNLE 49 (492)
Q Consensus 1 nL~~L~L~~s~i~--------------------~l~-~~~~~--------l~~L~~L~Ls~~~~l~~~p~--l~~~~nL~ 49 (492)
+|++|+|++|+|. .++ ..+.. +++|+.|+|.+ . ++.+++ |.++++|+
T Consensus 50 ~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~ 127 (329)
T 3sb4_A 50 SLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLK 127 (329)
T ss_dssp TCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCC
T ss_pred cCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccc
Confidence 5899999999998 222 22334 56666666665 2 223332 56666666
Q ss_pred EEEeeCcccCccccccccCCcCCcEEeccCCC---CCcccCCcc--CCCCCC-EEEeeCCCCCcccCccc----cCCCCC
Q 043408 50 SLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR---SLTSLSTSI--HLESLK-TLILSGCSNLMKLPSSI----ERLSSL 119 (492)
Q Consensus 50 ~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~---~l~~lp~~~--~l~~L~-~L~L~~c~~l~~lp~~i----~~l~~L 119 (492)
.|++.++.....-+..+..+.++..+.+.... ....+.... ++..|+ .+.+.... .++..+ ....++
T Consensus 128 ~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~ 204 (329)
T 3sb4_A 128 ICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDI 204 (329)
T ss_dssp EEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGC
T ss_pred eEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcccCcccc
Confidence 66666543332223334444444444433311 011111111 233333 23332211 111111 123344
Q ss_pred cEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCccc-ccCCccccccccccccccccccc-ccccCCCCc-ccccC
Q 043408 120 ILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPN-ELGNLEALKELKAEGIAIREVPS-SIVCLKNLG-RLSFE 196 (492)
Q Consensus 120 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~-~L~l~ 196 (492)
..+.+.+.-...........+++|+.|++++|. +..+|+ .|..+.+|+.+++.++ ++.++. .+.++.+|+ .+.+.
T Consensus 205 ~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~ 282 (329)
T 3sb4_A 205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELP 282 (329)
T ss_dssp SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEEC
T ss_pred ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEc
Confidence 455544421111111001125566666666543 334443 4666666777766665 555544 245555665 66555
Q ss_pred CCc-CCc-cccCCCCCCcEEecCCCcccccch-hhhcCccccccc
Q 043408 197 SFK-ELP-ECLGQLSSLRILFLDKNNFERIPE-SIICLSHLYWLR 238 (492)
Q Consensus 197 ~~~-~lp-~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~ 238 (492)
+.- .++ ..|.++++|+.|++++|+++.++. .+.++++|+.|+
T Consensus 283 ~~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 283 ASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred ccceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 421 232 467788888888888888887765 666677777664
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.24 E-value=7.5e-11 Score=106.12 Aligned_cols=126 Identities=17% Similarity=0.150 Sum_probs=64.2
Q ss_pred EEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccc-cccCCcCCcEEeccCCC
Q 043408 4 SLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHS-SIQYLNKLIVLNLEHCR 81 (492)
Q Consensus 4 ~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~-si~~L~~L~~L~L~~~~ 81 (492)
.+++++++++.+|..+. ++|+.|++++|.+....+. +..+++|++|+|++|.. ..++. .++.
T Consensus 11 ~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~------------- 74 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDK------------- 74 (177)
T ss_dssp EEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTT-------------
T ss_pred EEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcc-eEeChhHccC-------------
Confidence 45555555555553332 4556666665554332222 44555555555555432 22222 2344
Q ss_pred CCcccCCccCCCCCCEEEeeCCCCCcccC-ccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCC
Q 043408 82 SLTSLSTSIHLESLKTLILSGCSNLMKLP-SSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQR 156 (492)
Q Consensus 82 ~l~~lp~~~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~ 156 (492)
+++|++|++++|. +..+| ..+..+++|++|++++|...+..+..+..+++|++|++++|.....
T Consensus 75 ----------l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 75 ----------LTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp ----------CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ----------CCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 4455555555533 22233 2355666666666666654433333346677777777777655443
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.24 E-value=7.6e-11 Score=106.10 Aligned_cols=128 Identities=25% Similarity=0.274 Sum_probs=68.0
Q ss_pred cEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCc-cccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCC
Q 043408 73 IVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPS-SIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGC 151 (492)
Q Consensus 73 ~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c 151 (492)
+.++++++. ++.+|..+ .++|++|++++|. +..++. .+..+++|++|++++|...+..+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~-l~~~p~~~-~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKG-LTSVPTGI-PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSC-CSSCCTTC-CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCC-CccCCCCC-CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 455555433 44554322 3556666666643 233332 3456666666666666544333344556666666666665
Q ss_pred CCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccc
Q 043408 152 SNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFER 223 (492)
Q Consensus 152 ~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~ 223 (492)
...+..+..++.+++|+.|++++|.++.+|. ..+..+++|+.|++++|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~--------------------~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPD--------------------GIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--------------------TTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCH--------------------HHhcCCcccCEEEecCCCeec
Confidence 4333333335555666666666665554443 123455666677777776653
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.22 E-value=6.1e-11 Score=108.66 Aligned_cols=125 Identities=20% Similarity=0.257 Sum_probs=81.3
Q ss_pred cEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCc-c-CCCCCCEEEeeCC
Q 043408 26 KHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTS-I-HLESLKTLILSGC 103 (492)
Q Consensus 26 ~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~-~-~l~~L~~L~L~~c 103 (492)
++++++++.+ +.+|. .-.++|++|+|++| .+..+|..+..+++|+.|+|++|. ++.++.. + ++++|++|++++|
T Consensus 13 ~~l~~~~~~l-~~ip~-~~~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGL-KVLPK-GIPRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCC-SSCCS-CCCTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCC-CcCCC-CCCCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCC
Confidence 4566666553 33443 11256777777764 344666667777777777777765 4444432 3 6777778887775
Q ss_pred CCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCC
Q 043408 104 SNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNL 154 (492)
Q Consensus 104 ~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l 154 (492)
......+..+..+++|++|+|++|......+..+..+++|+.|++++|...
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 543333446788888888888887766544456778888888888887543
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.12 E-value=5.7e-13 Score=122.59 Aligned_cols=114 Identities=21% Similarity=0.223 Sum_probs=74.3
Q ss_pred CcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccccccccc
Q 043408 106 LMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIV 185 (492)
Q Consensus 106 l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~ 185 (492)
++.+|..+..+++|++|++++|.... +| .+..+++|++|++++|. +..+|..+..+++|+.|++++|.+..+| .+.
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~ 112 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLS-GIE 112 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCCHH-HHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCcCC-ccc
Confidence 44555677777777777777765443 55 66677777777777753 3466766666777788888877777766 455
Q ss_pred cCCCCcccccCCCc--CCc--cccCCCCCCcEEecCCCcccc
Q 043408 186 CLKNLGRLSFESFK--ELP--ECLGQLSSLRILFLDKNNFER 223 (492)
Q Consensus 186 ~l~~L~~L~l~~~~--~lp--~~l~~l~~L~~L~L~~n~l~~ 223 (492)
.+++|+.|++++|. .++ ..+..+++|+.|++++|.++.
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 56666666665543 122 245666777777777776653
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.12 E-value=5.7e-13 Score=122.59 Aligned_cols=125 Identities=22% Similarity=0.252 Sum_probs=78.1
Q ss_pred CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCc
Q 043408 42 LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLI 120 (492)
Q Consensus 42 l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~ 120 (492)
+..+++|++|+|++|. +..+| .+..+++|+.|++++|. +..+|... .+++|++|++++|. +..+| .+..+++|+
T Consensus 44 ~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 44 LSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHHHSS
T ss_pred HhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCC-ccccCCCCC
Confidence 5556677777776653 33355 66667777777777664 45566544 45677777777753 34444 566777777
Q ss_pred EEEcccCCCCCccc-cccCCCCCCCEEeccCCCCCCCccc----------ccCCcccccccc
Q 043408 121 LLNLRNCSRLEGLP-SKICKLKSLERLNLSGCSNLQRLPN----------ELGNLEALKELK 171 (492)
Q Consensus 121 ~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~----------~l~~l~~L~~L~ 171 (492)
+|++++|.....-+ ..+..+++|++|++++|...+..|. .+..+++|+.|+
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 77777765543211 3567777788888877655443333 256677777776
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.03 E-value=7.9e-10 Score=99.41 Aligned_cols=109 Identities=20% Similarity=0.297 Sum_probs=61.2
Q ss_pred EEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCccc-ccCCcccccccccccc
Q 043408 97 TLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPN-ELGNLEALKELKAEGI 175 (492)
Q Consensus 97 ~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~l~~~ 175 (492)
.++++++ .+..+|..+. ++|++|+|++|...+..|..+.++++|++|+|++|. +..+|. .++.+++|+.|++++|
T Consensus 16 ~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 16 LVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp EEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC
Confidence 4444442 2344444432 455666666655555445556666666666666643 333433 3456666666666666
Q ss_pred cccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccchhhh
Q 043408 176 AIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESII 229 (492)
Q Consensus 176 ~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~ 229 (492)
.+..+|. ..+..+++|+.|+|++|.+...+..+.
T Consensus 92 ~l~~l~~--------------------~~~~~l~~L~~L~L~~N~~~c~~~~~~ 125 (174)
T 2r9u_A 92 HLKSIPR--------------------GAFDNLKSLTHIYLYNNPWDCECRDIM 125 (174)
T ss_dssp CCCCCCT--------------------TTTTTCTTCSEEECCSSCBCTTBGGGH
T ss_pred ccceeCH--------------------HHhccccCCCEEEeCCCCcccccccHH
Confidence 6665543 224567777788888887775554333
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.01 E-value=1e-09 Score=98.27 Aligned_cols=106 Identities=22% Similarity=0.302 Sum_probs=58.5
Q ss_pred CEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccc
Q 043408 96 KTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGI 175 (492)
Q Consensus 96 ~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~ 175 (492)
+++++++ +.+..+|..+. ++|++|+|++|...+..|..+..+++|++|+|++|...+..+..++.+++|+.|++++|
T Consensus 12 ~~l~~s~-n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSG-KSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTT-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCC-CCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3444444 23334444332 45556666665555555555666666666666665433222333466666666666666
Q ss_pred cccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCccccc
Q 043408 176 AIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERI 224 (492)
Q Consensus 176 ~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~l 224 (492)
.++.+|. ..+..+++|+.|+|++|.++..
T Consensus 89 ~l~~~~~--------------------~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPR--------------------GAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCT--------------------TTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCH--------------------HHhcCCCCCCEEEeCCCCCCCC
Confidence 6665543 2345667777777777776533
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.98 E-value=1.3e-08 Score=103.97 Aligned_cols=226 Identities=14% Similarity=0.208 Sum_probs=161.1
Q ss_pred ceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC--CCCCCCccEEEeeCcccCcccc-ccccCCcCCcEEec
Q 043408 2 LVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD--LSLATNLESLTFRGCTSLLETH-SSIQYLNKLIVLNL 77 (492)
Q Consensus 2 L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~--l~~~~nL~~L~L~~c~~l~~~~-~si~~L~~L~~L~L 77 (492)
++.+.++. +++.+. ..+..+ +|+.+.+..+ ++.+++ |.+ .+|+.+.+.. .+..+. ..+..+.+|+.+++
T Consensus 115 l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 115 YNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp CSEEECCT-TCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEEC
T ss_pred ccEEEECC-ccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeec
Confidence 44556664 467776 345554 7999999875 444443 666 4799999975 455554 45778899999999
Q ss_pred cCCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCc-cccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCC
Q 043408 78 EHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPS-SIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQ 155 (492)
Q Consensus 78 ~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~ 155 (492)
.++. ++.++... ...+|+.+.+.. .+..++. .|.++++|+.+++..+ +..++.....-.+|+.+.+.. .+.
T Consensus 188 ~~n~-l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp~--~i~ 260 (401)
T 4fdw_A 188 SKTK-ITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLPN--GVT 260 (401)
T ss_dssp TTSC-CSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEET--TCC
T ss_pred CCCc-ceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeCC--Ccc
Confidence 8764 67776654 678999999975 3666654 5888999999999863 444544433337899999964 344
Q ss_pred Cc-ccccCCccccccccccccccc-----ccc-cccccCCCCcccccCCCc-CCc-cccCCCCCCcEEecCCCcccccc-
Q 043408 156 RL-PNELGNLEALKELKAEGIAIR-----EVP-SSIVCLKNLGRLSFESFK-ELP-ECLGQLSSLRILFLDKNNFERIP- 225 (492)
Q Consensus 156 ~l-p~~l~~l~~L~~L~l~~~~i~-----~lp-~~~~~l~~L~~L~l~~~~-~lp-~~l~~l~~L~~L~L~~n~l~~lp- 225 (492)
.+ ...+..+++|+.+++.++.+. .++ ..+..+++|+.+.+...- .++ ..+.++++|+.+.|..+ ++.+.
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence 55 356888999999999887665 344 356788899999987532 343 46788999999999554 77665
Q ss_pred hhhhcCcccccccccccc
Q 043408 226 ESIICLSHLYWLRISYCE 243 (492)
Q Consensus 226 ~~l~~l~~L~~L~L~~c~ 243 (492)
..+.++ +|+.+++.++.
T Consensus 340 ~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TSSSSS-CCCEEEECCSS
T ss_pred HhCCCC-CCCEEEEcCCC
Confidence 467778 99999999863
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.96 E-value=2.7e-08 Score=101.50 Aligned_cols=224 Identities=13% Similarity=0.153 Sum_probs=153.3
Q ss_pred CCCCCcEEEccCCCCCCCCCC--CCCCCCccEEEeeCcccCcccccc-ccCCcCCcEEeccCCCCCcccCCcc--CCCCC
Q 043408 21 RLVNLKHLNLSHSEHLTKIPD--LSLATNLESLTFRGCTSLLETHSS-IQYLNKLIVLNLEHCRSLTSLSTSI--HLESL 95 (492)
Q Consensus 21 ~l~~L~~L~Ls~~~~l~~~p~--l~~~~nL~~L~L~~c~~l~~~~~s-i~~L~~L~~L~L~~~~~l~~lp~~~--~l~~L 95 (492)
.+..++.+.+.++ .+.++. |.++ +|+.+.+..+ +..+... +.+ .+|+.+.+.. .++.++... ++.+|
T Consensus 111 ~~~~l~~i~ip~~--i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L 182 (401)
T 4fdw_A 111 ILKGYNEIILPNS--VKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNL 182 (401)
T ss_dssp ECSSCSEEECCTT--CCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTC
T ss_pred ecCCccEEEECCc--cCEehHhhcccC-CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccC
Confidence 3577888888764 334443 6664 7999998753 6566543 334 5799999875 466666544 88999
Q ss_pred CEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCcc-ccccCCCCCCCEEeccCCCCCCCccc-ccCCcccccccccc
Q 043408 96 KTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGL-PSKICKLKSLERLNLSGCSNLQRLPN-ELGNLEALKELKAE 173 (492)
Q Consensus 96 ~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~l~ 173 (492)
+.+++.++ .+..++...-...+|+.+.|..+ +..+ ...+.++++|+.+++..+ +..++. .+.. .+|+.+.+
T Consensus 183 ~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~l- 255 (401)
T 4fdw_A 183 KKADLSKT-KITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKL- 255 (401)
T ss_dssp CEEECTTS-CCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEE-
T ss_pred CeeecCCC-cceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEe-
Confidence 99999874 56677766444689999999853 4444 345778889999999863 444443 3555 68888888
Q ss_pred ccccccccc-ccccCCCCcccccCCCcC-------Cc-cccCCCCCCcEEecCCCcccccch-hhhcCcccccccccccc
Q 043408 174 GIAIREVPS-SIVCLKNLGRLSFESFKE-------LP-ECLGQLSSLRILFLDKNNFERIPE-SIICLSHLYWLRISYCE 243 (492)
Q Consensus 174 ~~~i~~lp~-~~~~l~~L~~L~l~~~~~-------lp-~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~ 243 (492)
.+.++.++. .+..+++|+.+.+.++.. ++ ..+..+++|+.++|. ++++.++. .+.++++|+.+.|..+
T Consensus 256 p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~- 333 (401)
T 4fdw_A 256 PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN- 333 (401)
T ss_dssp ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-
T ss_pred CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-
Confidence 445666644 567888999998876542 33 467889999999998 45777764 6777899999988553
Q ss_pred ccccCCCC---Ccccceeeccc
Q 043408 244 RLKSLPEL---PCDLSDIEAHC 262 (492)
Q Consensus 244 ~l~~lp~l---~~sL~~L~~~~ 262 (492)
++.|+.- -.+|+.+.+.+
T Consensus 334 -l~~I~~~aF~~~~L~~l~l~~ 354 (401)
T 4fdw_A 334 -VTQINFSAFNNTGIKEVKVEG 354 (401)
T ss_dssp -CCEECTTSSSSSCCCEEEECC
T ss_pred -ccEEcHHhCCCCCCCEEEEcC
Confidence 5555431 11555555544
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.95 E-value=3.6e-09 Score=95.06 Aligned_cols=107 Identities=19% Similarity=0.168 Sum_probs=66.5
Q ss_pred cEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCC
Q 043408 73 IVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCS 152 (492)
Q Consensus 73 ~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~ 152 (492)
+.++++++. +..+|..+ .++|++|++++|......|..+.++++|++|+|++|...+..+..+.++++|++|+|++|.
T Consensus 15 ~~l~~~~n~-l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSC-CSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCC-CCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 455665543 55565544 2666777777654333335567777777777777765544333345677777777777754
Q ss_pred CCCCccc-ccCCccccccccccccccccccc
Q 043408 153 NLQRLPN-ELGNLEALKELKAEGIAIREVPS 182 (492)
Q Consensus 153 ~l~~lp~-~l~~l~~L~~L~l~~~~i~~lp~ 182 (492)
.. .+|. .++.+++|+.|++++|.+.-.+.
T Consensus 93 l~-~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 93 LK-SIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CC-CCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred cc-eeCHHHhccccCCCEEEeCCCCcccccc
Confidence 43 4444 47777778888887777665443
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.93 E-value=4.3e-09 Score=94.15 Aligned_cols=105 Identities=20% Similarity=0.129 Sum_probs=69.0
Q ss_pred CcEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCC
Q 043408 72 LIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGC 151 (492)
Q Consensus 72 L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c 151 (492)
.+.++++++. ++.+|..+ .++|++|++++|......|..+.++++|++|+|++|...+..+..+..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~-l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKS-LASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSC-CSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCC-cCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4566666644 56666544 366777777775443334556777788888888877665544445677888888888876
Q ss_pred CCCCCcccccCCccccccccccccccc
Q 043408 152 SNLQRLPNELGNLEALKELKAEGIAIR 178 (492)
Q Consensus 152 ~~l~~lp~~l~~l~~L~~L~l~~~~i~ 178 (492)
...+..+..++.+++|+.|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 544333345777888888888887665
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.83 E-value=5.3e-09 Score=103.72 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=40.5
Q ss_pred CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeC
Q 043408 1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRG 55 (492)
Q Consensus 1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~ 55 (492)
+|++|+|++ +++.+. ..+..|++|+.|++++|......+. |..+.++..+.+..
T Consensus 102 ~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 102 TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 578899998 899998 4588899999999999876543333 77777777666543
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.80 E-value=2.9e-10 Score=115.05 Aligned_cols=158 Identities=17% Similarity=0.104 Sum_probs=76.4
Q ss_pred CcCCcEEeccCCCCCcc-----cCCcc--CCCCCCEEEeeCCCCCcccCcc-ccCCCCCcEEEcccCCCCCcccccc---
Q 043408 69 LNKLIVLNLEHCRSLTS-----LSTSI--HLESLKTLILSGCSNLMKLPSS-IERLSSLILLNLRNCSRLEGLPSKI--- 137 (492)
Q Consensus 69 L~~L~~L~L~~~~~l~~-----lp~~~--~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~i--- 137 (492)
+++|+.|+|++|. +.. +...+ ..++|++|++++|.....-... ...+++|++|+|++|.....-...+
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 3567777777765 221 11111 2356777777765432221111 2234466666666665443222222
Q ss_pred --CCCCCCCEEeccCCCCCC----CcccccCCcccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCCC
Q 043408 138 --CKLKSLERLNLSGCSNLQ----RLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSL 211 (492)
Q Consensus 138 --~~l~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L 211 (492)
...++|++|+|++|.... .++..+..+++|++|++++|.+..... ..+...+...++|
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~----------------~~L~~~L~~~~~L 213 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL----------------ELLAAQLDRNRQL 213 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH----------------HHHHHHGGGCSCC
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH----------------HHHHHHHhcCCCc
Confidence 234556666666654321 133334455556666666665542110 0122334445556
Q ss_pred cEEecCCCccc-----ccchhhhcCcccccccccccc
Q 043408 212 RILFLDKNNFE-----RIPESIICLSHLYWLRISYCE 243 (492)
Q Consensus 212 ~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~c~ 243 (492)
+.|+|++|.++ .+...+...++|+.|+|++|.
T Consensus 214 ~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 214 QELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 66666666654 233444455666666666653
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.69 E-value=2.5e-08 Score=99.35 Aligned_cols=84 Identities=15% Similarity=0.040 Sum_probs=46.5
Q ss_pred EEeeCCCCCcccCccccCCCCCcEEEccc-CCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCccccccccccccc
Q 043408 98 LILSGCSNLMKLPSSIERLSSLILLNLRN-CSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIA 176 (492)
Q Consensus 98 L~L~~c~~l~~lp~~i~~l~~L~~L~L~~-~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~ 176 (492)
+++++++.+..+|. +..+++|++|+|++ |.+.+..+..+.++++|+.|+|++|...+..|..++.+++|+.|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 34444324555555 55566666666654 44333333456666666666666654444444455666666666666666
Q ss_pred cccccc
Q 043408 177 IREVPS 182 (492)
Q Consensus 177 i~~lp~ 182 (492)
+..+|.
T Consensus 92 l~~~~~ 97 (347)
T 2ifg_A 92 LESLSW 97 (347)
T ss_dssp CSCCCS
T ss_pred cceeCH
Confidence 665553
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.66 E-value=6.2e-08 Score=96.52 Aligned_cols=86 Identities=24% Similarity=0.216 Sum_probs=39.8
Q ss_pred CCCCCCEEEeeCCCCCcccC-ccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCccc-ccCCccccc
Q 043408 91 HLESLKTLILSGCSNLMKLP-SSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPN-ELGNLEALK 168 (492)
Q Consensus 91 ~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~ 168 (492)
.+++|++|+|++++.+..++ ..|+++++|++|+|++|.+.+..|..+.++++|+.|+|++|... .+|. .+..+. |+
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~-L~ 106 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLS-LQ 106 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCC-CC
T ss_pred CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHcccCC-ce
Confidence 34444444444322333333 33555555555555555444444444555555555555554322 3332 233332 55
Q ss_pred cccccccccc
Q 043408 169 ELKAEGIAIR 178 (492)
Q Consensus 169 ~L~l~~~~i~ 178 (492)
.|++.+|.+.
T Consensus 107 ~l~l~~N~~~ 116 (347)
T 2ifg_A 107 ELVLSGNPLH 116 (347)
T ss_dssp EEECCSSCCC
T ss_pred EEEeeCCCcc
Confidence 5555555544
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.60 E-value=1.9e-09 Score=109.09 Aligned_cols=109 Identities=19% Similarity=0.086 Sum_probs=53.9
Q ss_pred cCCcEEeccCCCCCcc-cCCcc-CCCCCCEEEeeCCCCCcccCc----cc-cCCCCCcEEEcccCCCCC----ccccccC
Q 043408 70 NKLIVLNLEHCRSLTS-LSTSI-HLESLKTLILSGCSNLMKLPS----SI-ERLSSLILLNLRNCSRLE----GLPSKIC 138 (492)
Q Consensus 70 ~~L~~L~L~~~~~l~~-lp~~~-~l~~L~~L~L~~c~~l~~lp~----~i-~~l~~L~~L~L~~~~~l~----~lp~~i~ 138 (492)
.+|+.|+|++|..-.. +.... .+++|++|++++|.....-.. .+ ...++|++|+|++|.... .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 4566666666542111 11101 344566666666543222111 12 234566666666665432 2334445
Q ss_pred CCCCCCEEeccCCCCCC----CcccccCCccccccccccccccc
Q 043408 139 KLKSLERLNLSGCSNLQ----RLPNELGNLEALKELKAEGIAIR 178 (492)
Q Consensus 139 ~l~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~ 178 (492)
..++|++|+|++|.... .+...+...++|+.|++++|.+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 56667777777664321 12344455556666666666655
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.52 E-value=3.8e-08 Score=98.90 Aligned_cols=159 Identities=13% Similarity=0.133 Sum_probs=73.4
Q ss_pred cccCCcCCcEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCcccc--CCCCCcEEEcccCCC-------CCcccc
Q 043408 65 SIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIE--RLSSLILLNLRNCSR-------LEGLPS 135 (492)
Q Consensus 65 si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~--~l~~L~~L~L~~~~~-------l~~lp~ 135 (492)
.+..+++|+.|+|++|..+ .++. +.+++|++|++..|.........+. .+++|++|+|+.+.. ...+..
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 3445666777777665322 2333 3466677777666543222222222 566666666642110 001111
Q ss_pred cc--CCCCCCCEEeccCCCCCCCcccc---cCCcccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCC
Q 043408 136 KI--CKLKSLERLNLSGCSNLQRLPNE---LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSS 210 (492)
Q Consensus 136 ~i--~~l~~L~~L~Ls~c~~l~~lp~~---l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~ 210 (492)
.+ ..+++|+.|+|.+|......+.. .+.+++|++|+++.|.+...-. ..++..+.++++
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~----------------~~L~~~L~~l~~ 308 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA----------------RLLLDHVDKIKH 308 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH----------------HHHHTTHHHHTT
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH----------------HHHHhhcccCCc
Confidence 11 13455666666554332211111 1234455555555444432100 012233456788
Q ss_pred CcEEecCCCcccc-cchhhhc-Ccccccccccccc
Q 043408 211 LRILFLDKNNFER-IPESIIC-LSHLYWLRISYCE 243 (492)
Q Consensus 211 L~~L~L~~n~l~~-lp~~l~~-l~~L~~L~L~~c~ 243 (492)
|+.|+|++|.++. .-..+.. + ...++++++.
T Consensus 309 L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 309 LKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred ceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 8999998888762 2222322 2 2446666654
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.51 E-value=6.9e-08 Score=97.00 Aligned_cols=162 Identities=14% Similarity=0.161 Sum_probs=105.1
Q ss_pred cccccccCCCCCcEEEccCCCCCC---------CCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCC
Q 043408 14 QLWKGVQRLVNLKHLNLSHSEHLT---------KIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSL 83 (492)
Q Consensus 14 ~l~~~~~~l~~L~~L~Ls~~~~l~---------~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l 83 (492)
.+...+..+++|+.|.+.+..... .+.. +..+|+|+.|+|++|..+ .++. +. +++|+.|++..|..-
T Consensus 130 ~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~ 206 (362)
T 2ra8_A 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLP 206 (362)
T ss_dssp HHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCC
T ss_pred HHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCC
Confidence 345566778999999997643210 1212 456799999999997433 3333 33 789999999876522
Q ss_pred cccCCc---cCCCCCCEEEeeCCCC-------CcccCccc--cCCCCCcEEEcccCCCCCcccccc---CCCCCCCEEec
Q 043408 84 TSLSTS---IHLESLKTLILSGCSN-------LMKLPSSI--ERLSSLILLNLRNCSRLEGLPSKI---CKLKSLERLNL 148 (492)
Q Consensus 84 ~~lp~~---~~l~~L~~L~L~~c~~-------l~~lp~~i--~~l~~L~~L~L~~~~~l~~lp~~i---~~l~~L~~L~L 148 (492)
...... ..+++|+.|+|+.+.. +..+...+ ..+++|++|+|.+|......+..+ ..+++|++|+|
T Consensus 207 ~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdL 286 (362)
T 2ra8_A 207 DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI 286 (362)
T ss_dssp HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEEC
T ss_pred hHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEEC
Confidence 111111 1689999999864211 22222233 358999999999987654332222 35789999999
Q ss_pred cCCCCCC----CcccccCCccccccccccccccc
Q 043408 149 SGCSNLQ----RLPNELGNLEALKELKAEGIAIR 178 (492)
Q Consensus 149 s~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~ 178 (492)
+.|.... .++..+..+++|+.|++++|.+.
T Consensus 287 s~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 287 SAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 8865432 24445567789999999999876
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.47 E-value=2.5e-06 Score=86.51 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=19.3
Q ss_pred CCCCCCEEEeeCCCCCcccC-ccccCCCCCcEEEccc
Q 043408 91 HLESLKTLILSGCSNLMKLP-SSIERLSSLILLNLRN 126 (492)
Q Consensus 91 ~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~L~~ 126 (492)
++++|+.+.+... +..++ ..+.++.+|+.+.+..
T Consensus 160 ~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 160 TCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp TCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred ccCCCcEEecCCc--cceeccccccCCCCceEEEcCC
Confidence 5667777776542 23333 2356666666666654
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.10 E-value=0.00033 Score=70.23 Aligned_cols=248 Identities=15% Similarity=0.167 Sum_probs=119.9
Q ss_pred ceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC--CCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408 2 LVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD--LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE 78 (492)
Q Consensus 2 L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~--l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~ 78 (492)
|+.+.++ .+++.+. ..+..+.+|+.++|..+ .+.+++ |.++ +|+.+.+-. .+..+........+|+.+.+.
T Consensus 48 i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~~~L~~i~lp 121 (379)
T 4h09_A 48 ISEVRVN-SGITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQGTDLDDFEFP 121 (379)
T ss_dssp CSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTTCCCSEEECC
T ss_pred CEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCc--eeeEeccceeccCCcccccCC
Confidence 3444444 2355555 34666777777777653 333433 5554 566665542 344444433333467777665
Q ss_pred CCCCCcccCCcc-CCCCCCEEEeeCCCCCcccC-ccccCCCCCcEEEcccCCCCC-------------------------
Q 043408 79 HCRSLTSLSTSI-HLESLKTLILSGCSNLMKLP-SSIERLSSLILLNLRNCSRLE------------------------- 131 (492)
Q Consensus 79 ~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~L~~~~~l~------------------------- 131 (492)
.+ +..+.... .-.+|+.+.+.. .+..+. ..+.++.+++.+.+.......
T Consensus 122 ~~--~~~i~~~~F~~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (379)
T 4h09_A 122 GA--TTEIGNYIFYNSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGT 197 (379)
T ss_dssp TT--CCEECTTTTTTCCCCEEEECT--TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCS
T ss_pred Cc--cccccccccccceeeeeeccc--eeeccccchhcccccccccccccccceeecccceecccccceecccccccccc
Confidence 42 22222211 222344443332 111121 223444444444433221110
Q ss_pred ----------ccccccCCCCCCCEEeccCCCCCCCcc-cccCCccccccccccccccccccc-ccccCCCCcccccCCCc
Q 043408 132 ----------GLPSKICKLKSLERLNLSGCSNLQRLP-NELGNLEALKELKAEGIAIREVPS-SIVCLKNLGRLSFESFK 199 (492)
Q Consensus 132 ----------~lp~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~ 199 (492)
.....+....+|+.+.+... +..+. ..+..+..|+.+.+..+ ++.+.. .+..+.+|+.+.+...-
T Consensus 198 ~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i 274 (379)
T 4h09_A 198 EFTIPSTVKTVTAYGFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKV 274 (379)
T ss_dssp EEECCTTCCEECTTTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCC
T ss_pred ccccccceeEEeecccccccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccccc
Confidence 01112233445555555431 22221 23455566666666543 333332 34456667766664432
Q ss_pred -CCc-cccCCCCCCcEEecCCCcccccch-hhhcCccccccccccccccccCCCCCcccceeecccccccccccc
Q 043408 200 -ELP-ECLGQLSSLRILFLDKNNFERIPE-SIICLSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSG 271 (492)
Q Consensus 200 -~lp-~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~l~~sL~~L~~~~C~~L~~l~~ 271 (492)
.++ ..+..+++|+.+.+.++.++.++. .+.++.+|+.+.|... ++.|.. --..+|.+|+.+.-
T Consensus 275 ~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~-------~aF~~C~~L~~i~i 340 (379)
T 4h09_A 275 KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQV-------YAFKNCKALSTISY 340 (379)
T ss_dssp SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECT-------TTTTTCTTCCCCCC
T ss_pred eeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHH-------HHhhCCCCCCEEEE
Confidence 233 256778888888888887877764 5667777777766321 222221 12356777776644
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.05 E-value=6.9e-05 Score=75.82 Aligned_cols=228 Identities=13% Similarity=0.117 Sum_probs=145.7
Q ss_pred ccccCCCCCcEEEccCCCCCCCCC--CCCCCCCccEEEeeCcccCcccc-ccccCCcCCcEEeccCCCCCcccCCcc-CC
Q 043408 17 KGVQRLVNLKHLNLSHSEHLTKIP--DLSLATNLESLTFRGCTSLLETH-SSIQYLNKLIVLNLEHCRSLTSLSTSI-HL 92 (492)
Q Consensus 17 ~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~~~nL~~L~L~~c~~l~~~~-~si~~L~~L~~L~L~~~~~l~~lp~~~-~l 92 (492)
..+..+.+|+.+.+.++. ..++ .|.++.+|+.+.+..+ +..+. ..+..+..|+.+.+..+. ..+.... ..
T Consensus 156 ~aF~~c~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~--~~i~~~~~~~ 229 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSL--YYLGDFALSK 229 (394)
T ss_dssp TTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTC--CEECTTTTTT
T ss_pred hhhcccCCCcEEecCCcc--ceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCc--eEeehhhccc
Confidence 457788999999998653 3333 3888999999988653 44443 345567778877766532 2232222 56
Q ss_pred CCCCEEEeeCCCCCcccC-ccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcc-cccCCccccccc
Q 043408 93 ESLKTLILSGCSNLMKLP-SSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLP-NELGNLEALKEL 170 (492)
Q Consensus 93 ~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L 170 (492)
.+|+.+.+.. ....+. ..+.++..|+.+.+..+ ....-...+..+..++.+...... ++ ..+..+.+|+.+
T Consensus 230 ~~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i 302 (394)
T 4fs7_A 230 TGVKNIIIPD--SFTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEV 302 (394)
T ss_dssp CCCCEEEECT--TCCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEE
T ss_pred CCCceEEECC--CceecccccccccccceeEEcCCC-cceeeccccccccccceeccCcee----ecccccccccccccc
Confidence 7788887764 233333 34677888888888764 222233445667777777665421 22 245667778877
Q ss_pred cccccccccccc-ccccCCCCcccccCCC-cCCc-cccCCCCCCcEEecCCCcccccch-hhhcCccccccccccccccc
Q 043408 171 KAEGIAIREVPS-SIVCLKNLGRLSFESF-KELP-ECLGQLSSLRILFLDKNNFERIPE-SIICLSHLYWLRISYCERLK 246 (492)
Q Consensus 171 ~l~~~~i~~lp~-~~~~l~~L~~L~l~~~-~~lp-~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~ 246 (492)
.+..+ ++.++. .+.++.+|+.+++... ..+. ..+.++++|+.+++..+ ++.+.. .+.++.+|+.+++..+ ++
T Consensus 303 ~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~--~~ 378 (394)
T 4fs7_A 303 KLLDS-VKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR--LE 378 (394)
T ss_dssp EECTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG--GG
T ss_pred ccccc-cceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC--CE
Confidence 77554 555543 3567788888887543 3343 46788999999999766 776654 6778888998887653 22
Q ss_pred cCCCCCcccceeecccccccccc
Q 043408 247 SLPELPCDLSDIEAHCCSSLEAL 269 (492)
Q Consensus 247 ~lp~l~~sL~~L~~~~C~~L~~l 269 (492)
. +. -...+|++|+.+
T Consensus 379 ~-------~~-~~F~~c~~L~~I 393 (394)
T 4fs7_A 379 Q-------YR-YDFEDTTKFKWI 393 (394)
T ss_dssp G-------GG-GGBCTTCEEEEE
T ss_pred E-------hh-heecCCCCCcEE
Confidence 2 22 246688888765
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.03 E-value=0.00021 Score=72.17 Aligned_cols=266 Identities=14% Similarity=0.196 Sum_probs=126.7
Q ss_pred ccccc-ccccCCC-CCcEEEccCCCCCCCCCC--CCCCCCccEEEeeCc--ccCccccc-cccCCcCCcEEeccCCCCCc
Q 043408 12 IKQLW-KGVQRLV-NLKHLNLSHSEHLTKIPD--LSLATNLESLTFRGC--TSLLETHS-SIQYLNKLIVLNLEHCRSLT 84 (492)
Q Consensus 12 i~~l~-~~~~~l~-~L~~L~Ls~~~~l~~~p~--l~~~~nL~~L~L~~c--~~l~~~~~-si~~L~~L~~L~L~~~~~l~ 84 (492)
++.+. ..+..++ .|+.+.+..+ .+.+.+ |.++.+|+.+.+..+ ..+..+.. .+..+.+|+.+.+.. .++
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~ 126 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVT 126 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCS
T ss_pred eeEcCHhhccCCCCcCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccc
Confidence 44454 3455554 4777777654 333433 777788888877653 23444432 344556666655543 244
Q ss_pred ccCCcc--CCCCCCEEEeeCCCCCcccC-ccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCccccc
Q 043408 85 SLSTSI--HLESLKTLILSGCSNLMKLP-SSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNEL 161 (492)
Q Consensus 85 ~lp~~~--~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l 161 (492)
.++... .+.+|+.+.+.. .+..++ ..+.++.+|+.+.+..+ +..+.........|+.+.+..... ..-...+
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~~-~i~~~af 201 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKVT-RIGTNAF 201 (394)
T ss_dssp EECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTCC-EECTTTT
T ss_pred eehhhhhhhhcccccccccc--eeeeecccceecccccccccccce--eeEeccccccccceeEEEECCccc-ccccchh
Confidence 444332 566677766653 223332 23555666666666542 222222222234455555432110 0000112
Q ss_pred CCcccccccccccc---------------------------cc--ccccc--------ccccCCCCcccccCCCc-CCc-
Q 043408 162 GNLEALKELKAEGI---------------------------AI--REVPS--------SIVCLKNLGRLSFESFK-ELP- 202 (492)
Q Consensus 162 ~~l~~L~~L~l~~~---------------------------~i--~~lp~--------~~~~l~~L~~L~l~~~~-~lp- 202 (492)
..+..|+....... .. -.+|. .+..+.+|+.+.+.... .+.
T Consensus 202 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~ 281 (394)
T 4gt6_A 202 SECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVSIGT 281 (394)
T ss_dssp TTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCEECT
T ss_pred hhccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccceecC
Confidence 22222221111000 00 01222 24456667777665432 232
Q ss_pred cccCCCCCCcEEecCCCcccccch-hhhcCccccccccccccccccCCCCCcccceeecccccccccccccchhhccCCC
Q 043408 203 ECLGQLSSLRILFLDKNNFERIPE-SIICLSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSW 281 (492)
Q Consensus 203 ~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~l~~sL~~L~~~~C~~L~~l~~~~~~~~~~~~ 281 (492)
..+.++++|+.+.+. +.++.++. .+.++.+|+.+.|..+ ++.|.+ --..+|.+|+.+.-+... ..
T Consensus 282 ~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~-------~aF~~C~~L~~i~ip~sv----~~ 347 (394)
T 4gt6_A 282 GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILD-------DAFAGCEQLERIAIPSSV----TK 347 (394)
T ss_dssp TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECT-------TTTTTCTTCCEEEECTTC----CB
T ss_pred cccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehH-------hHhhCCCCCCEEEECccc----CE
Confidence 356778888888885 44666664 5666778887776432 333322 123466666665432210 00
Q ss_pred CCceeecccc-CCCCCceeCCCC
Q 043408 282 NSQCFDFQHC-EVPRGMICFPGS 303 (492)
Q Consensus 282 ~~~~~~~~~c-~l~~~~~~~pg~ 303 (492)
. ....|.+| +|. .+.+||.
T Consensus 348 I-~~~aF~~C~~L~--~i~~~~~ 367 (394)
T 4gt6_A 348 I-PESAFSNCTALN--NIEYSGS 367 (394)
T ss_dssp C-CGGGGTTCTTCC--EEEESSC
T ss_pred E-hHhHhhCCCCCC--EEEECCc
Confidence 0 12347777 664 3445554
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.00 E-value=2.4e-06 Score=76.25 Aligned_cols=95 Identities=15% Similarity=0.266 Sum_probs=68.7
Q ss_pred cccccccCCCCCcEEEccCCCCCCC-CCCCCCCCCccEEEeeCcccCccc-cccccCC----cCCcEEeccCCCCCcc--
Q 043408 14 QLWKGVQRLVNLKHLNLSHSEHLTK-IPDLSLATNLESLTFRGCTSLLET-HSSIQYL----NKLIVLNLEHCRSLTS-- 85 (492)
Q Consensus 14 ~l~~~~~~l~~L~~L~Ls~~~~l~~-~p~l~~~~nL~~L~L~~c~~l~~~-~~si~~L----~~L~~L~L~~~~~l~~-- 85 (492)
.+|.....-.+|+.|||++|.+... +..+..+++|++|+|++|..++.- -..+..+ ++|+.|+|++|..++.
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 4454333334799999999984432 345789999999999999876542 2234444 4799999999987764
Q ss_pred cCCccCCCCCCEEEeeCCCCCcc
Q 043408 86 LSTSIHLESLKTLILSGCSNLMK 108 (492)
Q Consensus 86 lp~~~~l~~L~~L~L~~c~~l~~ 108 (492)
+.....+++|++|++++|..++.
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCCc
Confidence 22223789999999999988764
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.98 E-value=0.00028 Score=71.32 Aligned_cols=96 Identities=19% Similarity=0.321 Sum_probs=57.7
Q ss_pred ceEEEccCCCccccc-ccccCCCCCcEEEccCCC--CCCCCCC--CCCCCCccEEEeeCcccCccccc-cccCCcCCcEE
Q 043408 2 LVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSE--HLTKIPD--LSLATNLESLTFRGCTSLLETHS-SIQYLNKLIVL 75 (492)
Q Consensus 2 L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~--~l~~~p~--l~~~~nL~~L~L~~c~~l~~~~~-si~~L~~L~~L 75 (492)
|+.+.++.+ ++.+. ..+..+.+|+.+.+..+. .++.+.. |..+.+|+.+.+.. .+..+.. .+..+.+|+.+
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCSEECTTTTTTCTTCCEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccceehhhhhhhhcccccc
Confidence 677777754 77776 567889999999997652 2333433 67777787776643 2333332 34556777777
Q ss_pred eccCCCCCcccCCcc--CCCCCCEEEeeC
Q 043408 76 NLEHCRSLTSLSTSI--HLESLKTLILSG 102 (492)
Q Consensus 76 ~L~~~~~l~~lp~~~--~l~~L~~L~L~~ 102 (492)
.+... +..++... .+.+|+.+.+..
T Consensus 143 ~lp~~--~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 143 TIPEG--VTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp ECCTT--CCEECTTTTTTCTTCCEEECCT
T ss_pred cccce--eeeecccceecccccccccccc
Confidence 76532 33333322 556666666543
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=6.9e-06 Score=73.27 Aligned_cols=85 Identities=12% Similarity=0.179 Sum_probs=46.1
Q ss_pred CCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccC--CccCC----CCCCEEEeeCCCCCccc-CccccCCC
Q 043408 45 ATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLS--TSIHL----ESLKTLILSGCSNLMKL-PSSIERLS 117 (492)
Q Consensus 45 ~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp--~~~~l----~~L~~L~L~~c~~l~~l-p~~i~~l~ 117 (492)
-.+|++|||++|.....--..+..+++|+.|+|++|..++.-. ....+ ++|++|++++|..++.- -..+.+++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3568888888887443333455667777777777776554321 10022 35666666666554421 12234445
Q ss_pred CCcEEEcccCCC
Q 043408 118 SLILLNLRNCSR 129 (492)
Q Consensus 118 ~L~~L~L~~~~~ 129 (492)
+|++|+|++|..
T Consensus 140 ~L~~L~L~~c~~ 151 (176)
T 3e4g_A 140 NLKYLFLSDLPG 151 (176)
T ss_dssp TCCEEEEESCTT
T ss_pred CCCEEECCCCCC
Confidence 555555554443
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.91 E-value=4.2e-06 Score=75.60 Aligned_cols=117 Identities=17% Similarity=0.116 Sum_probs=67.2
Q ss_pred ccccCCCCCcEEEcccC-CCCC----ccccccCCCCCCCEEeccCCCCCC----CcccccCCcccccccccccccccccc
Q 043408 111 SSIERLSSLILLNLRNC-SRLE----GLPSKICKLKSLERLNLSGCSNLQ----RLPNELGNLEALKELKAEGIAIREVP 181 (492)
Q Consensus 111 ~~i~~l~~L~~L~L~~~-~~l~----~lp~~i~~l~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~~lp 181 (492)
..+...+.|++|+|++| .... .+...+...++|++|+|++|.... .+.+.+...++|++|++++|.|..--
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 44566788888888887 4432 244455666778888887765322 12233444456666666666655210
Q ss_pred cccccCCCCcccccCCCcCCccccCCCCCCcEEec--CCCccc-----ccchhhhcCcccccccccccc
Q 043408 182 SSIVCLKNLGRLSFESFKELPECLGQLSSLRILFL--DKNNFE-----RIPESIICLSHLYWLRISYCE 243 (492)
Q Consensus 182 ~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L--~~n~l~-----~lp~~l~~l~~L~~L~L~~c~ 243 (492)
. ..+...+...++|++|+| ++|.+. .+...+...++|+.|+|++|.
T Consensus 110 ~----------------~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 110 I----------------LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp H----------------HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred H----------------HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 0 012233445566777777 667665 244555566677777776653
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.76 E-value=0.001 Score=66.53 Aligned_cols=225 Identities=12% Similarity=0.090 Sum_probs=104.4
Q ss_pred ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC--CCCCCCccEEEeeCcccCcccc-ccccCCcCCcEEecc
Q 043408 2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD--LSLATNLESLTFRGCTSLLETH-SSIQYLNKLIVLNLE 78 (492)
Q Consensus 2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~--l~~~~nL~~L~L~~c~~l~~~~-~si~~L~~L~~L~L~ 78 (492)
|..+.++ ++++.+........+|+.+++..+- +.+.. +.+. +|+.+.+-. .+..+. ..+..+.+|+.+.+.
T Consensus 93 l~~i~~~-~~l~~I~~~aF~~~~L~~i~lp~~~--~~i~~~~F~~~-~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~ 166 (379)
T 4h09_A 93 LQSYTGM-ERVKKFGDYVFQGTDLDDFEFPGAT--TEIGNYIFYNS-SVKRIVIPK--SVTTIKDGIGYKAENLEKIEVS 166 (379)
T ss_dssp CCEEEEC-TTCCEECTTTTTTCCCSEEECCTTC--CEECTTTTTTC-CCCEEEECT--TCCEECSCTTTTCTTCCEEEEC
T ss_pred CceEECC-ceeeEeccceeccCCcccccCCCcc--ccccccccccc-eeeeeeccc--eeeccccchhcccccccccccc
Confidence 4445554 3366665443334578888887642 22222 3333 455555443 122222 223445555555544
Q ss_pred CCCCCcccCC-------------ccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCcc-ccccCCCCCCC
Q 043408 79 HCRSLTSLST-------------SIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGL-PSKICKLKSLE 144 (492)
Q Consensus 79 ~~~~l~~lp~-------------~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~ 144 (492)
.......... ......+..+.+... ........+..+.+|+.+.+..+ +..+ ...+..+..|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~ 243 (379)
T 4h09_A 167 SNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG--VTTLGDGAFYGMKALD 243 (379)
T ss_dssp TTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCC
T ss_pred cccceeecccceecccccceeccccccccccccccccc-eeEEeecccccccccceeeeccc--eeEEccccccCCccce
Confidence 3221110000 002233333333221 11111223444555666555432 1211 22344555666
Q ss_pred EEeccCCCCCCCcc-cccCCccccccccccccccccccc-ccccCCCCcccccCCC--cCCc-cccCCCCCCcEEecCCC
Q 043408 145 RLNLSGCSNLQRLP-NELGNLEALKELKAEGIAIREVPS-SIVCLKNLGRLSFESF--KELP-ECLGQLSSLRILFLDKN 219 (492)
Q Consensus 145 ~L~Ls~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~--~~lp-~~l~~l~~L~~L~L~~n 219 (492)
.+.+..+ +..+. ..+..+.+|+.+.+..+ +..++. .+..+.+|+.+.+.++ ..++ ..+.++.+|+.+.|..+
T Consensus 244 ~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 244 EIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp EEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred EEEcCCC--ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 6666442 22222 23455555666555432 333332 3455566666666543 2343 35677888888888643
Q ss_pred cccccch-hhhcCcccccccc
Q 043408 220 NFERIPE-SIICLSHLYWLRI 239 (492)
Q Consensus 220 ~l~~lp~-~l~~l~~L~~L~L 239 (492)
++.|.. .+.++.+|+.+.+
T Consensus 321 -l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 321 -LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp -CCEECTTTTTTCTTCCCCCC
T ss_pred -ccEEHHHHhhCCCCCCEEEE
Confidence 666653 5566666666655
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.69 E-value=7.1e-06 Score=74.09 Aligned_cols=116 Identities=13% Similarity=0.088 Sum_probs=80.2
Q ss_pred CCCCCCEEEeeCCCCCc-----ccCccccCCCCCcEEEcccCCCCCc----cccccCCCCCCCEEeccCCCCCCC----c
Q 043408 91 HLESLKTLILSGCSNLM-----KLPSSIERLSSLILLNLRNCSRLEG----LPSKICKLKSLERLNLSGCSNLQR----L 157 (492)
Q Consensus 91 ~l~~L~~L~L~~c~~l~-----~lp~~i~~l~~L~~L~L~~~~~l~~----lp~~i~~l~~L~~L~Ls~c~~l~~----l 157 (492)
..++|++|+|++|..+. .+...+...++|++|+|++|..... +...+...++|++|+|++|..... +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 67899999999983443 2455677889999999999986542 444556678999999999755322 4
Q ss_pred ccccCCccccccccc--ccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCccc
Q 043408 158 PNELGNLEALKELKA--EGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFE 222 (492)
Q Consensus 158 p~~l~~l~~L~~L~l--~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~ 222 (492)
.+.+...++|++|++ ++|.+..--. ..+...+...++|++|+|++|.+.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~----------------~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVE----------------MEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHH----------------HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHH----------------HHHHHHHHhCCCcCEEeccCCCCC
Confidence 455666677888888 6676652100 012223455678899999999875
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.38 E-value=7.1e-05 Score=71.52 Aligned_cols=94 Identities=17% Similarity=0.151 Sum_probs=61.2
Q ss_pred EEccCCCccccccc----ccCCCCCcEEEccCCCCCC--CCCC-CCCCCCccEEEeeCcccCccccccccCCc--CCcEE
Q 043408 5 LEMPHSSIKQLWKG----VQRLVNLKHLNLSHSEHLT--KIPD-LSLATNLESLTFRGCTSLLETHSSIQYLN--KLIVL 75 (492)
Q Consensus 5 L~L~~s~i~~l~~~----~~~l~~L~~L~Ls~~~~l~--~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~--~L~~L 75 (492)
++++.|..+.+... ...+++|+.|+|++|++.. .+|+ +..+++|+.|+|++|.... + ..+..+. +|+.|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-E-RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-G-GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-c-hhhhhcccCCcceE
Confidence 45666655544322 1458899999999988654 2333 4578999999998865433 2 2344444 89999
Q ss_pred eccCCCCCcccCCc-------c-CCCCCCEEEe
Q 043408 76 NLEHCRSLTSLSTS-------I-HLESLKTLIL 100 (492)
Q Consensus 76 ~L~~~~~l~~lp~~-------~-~l~~L~~L~L 100 (492)
+|++|..-..+|.. + .+++|+.||-
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 99998754444421 1 6888888863
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.16 E-value=0.00024 Score=67.75 Aligned_cols=79 Identities=29% Similarity=0.333 Sum_probs=41.0
Q ss_pred cCCCCCcEEEcccCCCCC--ccccccCCCCCCCEEeccCCCCCCCcccccCCcc--cccccccccccccc-cc-------
Q 043408 114 ERLSSLILLNLRNCSRLE--GLPSKICKLKSLERLNLSGCSNLQRLPNELGNLE--ALKELKAEGIAIRE-VP------- 181 (492)
Q Consensus 114 ~~l~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~--~L~~L~l~~~~i~~-lp------- 181 (492)
.++++|+.|+|++|...+ .+|..+..+++|+.|+|++|...+ + ..++.+. +|++|++++|.+.. +|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-E-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-G-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-c-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 345566666666655544 344444556666666666543322 2 1222222 56666666666542 22
Q ss_pred cccccCCCCcccc
Q 043408 182 SSIVCLKNLGRLS 194 (492)
Q Consensus 182 ~~~~~l~~L~~L~ 194 (492)
..+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2345667776665
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.29 E-value=0.009 Score=54.00 Aligned_cols=66 Identities=21% Similarity=0.283 Sum_probs=34.9
Q ss_pred ccCCCCCcEEEcccCCCCC-----ccccccCCCCCCCEEeccCCCCC----CCcccccCCccccccccccccccc
Q 043408 113 IERLSSLILLNLRNCSRLE-----GLPSKICKLKSLERLNLSGCSNL----QRLPNELGNLEALKELKAEGIAIR 178 (492)
Q Consensus 113 i~~l~~L~~L~L~~~~~l~-----~lp~~i~~l~~L~~L~Ls~c~~l----~~lp~~l~~l~~L~~L~l~~~~i~ 178 (492)
+.+-+.|++|+|++++.++ .+...+..-+.|+.|+|++|..- ..+-+.+..-+.|++|+|++|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3445677777777653332 13344555566777777665432 123333334455666666666554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.73 E-value=0.014 Score=52.76 Aligned_cols=61 Identities=20% Similarity=0.140 Sum_probs=29.3
Q ss_pred CCCCCEEEeeCCCCCc-----ccCccccCCCCCcEEEcccCCCCC----ccccccCCCCCCCEEeccCCC
Q 043408 92 LESLKTLILSGCSNLM-----KLPSSIERLSSLILLNLRNCSRLE----GLPSKICKLKSLERLNLSGCS 152 (492)
Q Consensus 92 l~~L~~L~L~~c~~l~-----~lp~~i~~l~~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~Ls~c~ 152 (492)
-+.|++|+|++++.+. .+-..+..-+.|+.|+|++|.... .+...+..-+.|+.|+|+.|.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 3456666665532332 123334445566666666655432 122233334556666666543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.23 E-value=0.058 Score=45.13 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=27.4
Q ss_pred EEEccCCCcc--cccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCc
Q 043408 4 SLEMPHSSIK--QLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGC 56 (492)
Q Consensus 4 ~L~L~~s~i~--~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c 56 (492)
.++.++++++ .+|.++. .+|+.|+|++|.+....++ |..+++|++|+|.+|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 3455566665 6664432 3566666666654433332 455556666666554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.08 E-value=0.041 Score=46.11 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=25.5
Q ss_pred CCCcEEecCCCcccccch-hhhcCcccccccccccc
Q 043408 209 SSLRILFLDKNNFERIPE-SIICLSHLYWLRISYCE 243 (492)
Q Consensus 209 ~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~ 243 (492)
++|+.|+|++|+|+.+|. .+..+++|+.|+|++|+
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 467788888888887765 45667778888777764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=30.83 E-value=58 Score=25.14 Aligned_cols=45 Identities=13% Similarity=0.120 Sum_probs=30.5
Q ss_pred CCCccccc-ccccCCCCCcEEEccCCCCCCCCC--CCCCCCCccEEEeeC
Q 043408 9 HSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIP--DLSLATNLESLTFRG 55 (492)
Q Consensus 9 ~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~~~nL~~L~L~~ 55 (492)
+..++.+- ..+..+.+|+.+.+-.+ .+.+. .|.++.+|+.+.+.+
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 44566665 45677888888888765 23343 377888888888765
Done!