BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043411
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 237 bits (604), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 119/244 (48%), Positives = 162/244 (66%), Gaps = 7/244 (2%)
Query: 1 MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSS-SFPGCFNVADLGC 59
M V V M GG GE SYA NS IQR V+S P E I ++S + +ADLGC
Sbjct: 1 MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGC 60
Query: 60 SSGPNTLLVVSKIIDSIHKLYHQVNKK-LPEFQVFLNDLPGNDFNSIFESLPDFYERIKK 118
SSGPN L V+++I ++ +L ++ ++ PE+Q+FLNDLPGNDFN+IF SLP I+
Sbjct: 61 SSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLP-----IEN 115
Query: 119 DKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPS 178
D G CFI G+ GSFY RLFP ++FIHSSYS+ WLS+VP +E+NK +IY+ + P S
Sbjct: 116 DVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQS 175
Query: 179 VCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSLIQ 238
V A+++QFQ D + FL R++E+V GGRM LT LGR D +S +CC +W+LL +L Q
Sbjct: 176 VLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQ 235
Query: 239 LANE 242
+ +E
Sbjct: 236 MVSE 239
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 201 bits (511), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 107/251 (42%), Positives = 154/251 (61%), Gaps = 15/251 (5%)
Query: 1 MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPG---CFNVADL 57
M + V MNGG G+TSYAKNS + V++K P LE+ ++++ ++ P C VADL
Sbjct: 1 MELQEVLRMNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLRANLPNINKCIKVADL 60
Query: 58 GCSSGPNTLLVVSKIIDSIHKLYHQVNKKL--PEFQVFLNDLPGNDFNSIFESLPDFYER 115
GC+SGPNTLL V I+ SI K+ + +L P Q+FLNDL NDFNS+F+ LP FY +
Sbjct: 61 GCASGPNTLLTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFPNDFNSVFKLLPSFYRK 120
Query: 116 IKKD---KFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENL------ENNK 166
++K+ K G C I M GSFY RLFP ++F+HS Y + WLS+VP L NK
Sbjct: 121 LEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLVTELGIGTNK 180
Query: 167 RDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCC 226
IY +K+S V +A+ +QF +DF+ FL + SEE+ S GRM LT + + + + +++
Sbjct: 181 GSIYSSKASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLTCICKGV-ELDARNAI 239
Query: 227 CLWELLTKSLI 237
L E+ L+
Sbjct: 240 DLLEMAINDLV 250
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 195 bits (495), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 103/227 (45%), Positives = 143/227 (62%), Gaps = 15/227 (6%)
Query: 1 MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPG---CFNVADL 57
M + V MNGG G+TSYAKNS+ ++ + P LE+ I+++ ++ P CF V DL
Sbjct: 1 MELQEVLHMNGGEGDTSYAKNSSYNLFLI-RVKPVLEQCIQELLRANLPNINKCFKVGDL 59
Query: 58 GCSSGPNTLLVVSKIIDSIHKLYHQVNKKL--PEFQVFLNDLPGNDFNSIFESLPDFYER 115
GC+SGPNT V I+ SI K+ + +L P Q+FLNDL NDFNS+F+ LP FY
Sbjct: 60 GCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRN 119
Query: 116 IKKD---KFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLEN------NK 166
++K+ K G C I M GSFY RLFP ++F+HS Y +HWLS+VP L NK
Sbjct: 120 LEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNK 179
Query: 167 RDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFL 213
IY +K+S P + +A+ +QF +DF+ FL + SEE++S GRM LTF+
Sbjct: 180 GCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFI 226
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 167 bits (423), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 128/233 (54%), Gaps = 13/233 (5%)
Query: 9 MNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMF--SSSFPGCFNVADLGCSSGPNTL 66
M GG G+ SYA NS Q LEET++++ SS+ P F DLGCSSG NT+
Sbjct: 9 MKGGKGQDSYANNSLAQAMHARSMLHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTV 68
Query: 67 LVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFY------ERIKKDK 120
++ I+ I K + PEF F +DLP NDFN++F+ LP E + D
Sbjct: 69 HIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADG 128
Query: 121 FGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIY-----ITKSS 175
F+AG+ GSFY+RLFP+R I+F HS++S+HWLS+VPE++ + + Y +
Sbjct: 129 NRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGA 188
Query: 176 PPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCL 228
A+ QFQ D + FL R+ E+ GG MFL LGR+ DP+ + L
Sbjct: 189 GEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGL 241
>pdb|1IRU|M Chain M, Crystal Structure Of The Mammalian 20s Proteasome At
2.75 A Resolution
pdb|1IRU|1 Chain 1, Crystal Structure Of The Mammalian 20s Proteasome At
2.75 A Resolution
Length = 213
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 49 PGCFNVAD---LGCSSGPNTLLVVSKIIDSIHKLYHQVNKK 86
P C+ + D +GCS L ++KII++ K+Y N K
Sbjct: 41 PKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNK 81
>pdb|3UNB|L Chain L, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Z Chain Z, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|NN Chain n, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|2 Chain 2, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|L Chain L, Mouse Constitutive 20s Proteasome
pdb|3UNE|Z Chain Z, Mouse Constitutive 20s Proteasome
pdb|3UNE|NN Chain n, Mouse Constitutive 20s Proteasome
pdb|3UNE|2 Chain 2, Mouse Constitutive 20s Proteasome
pdb|3UNF|L Chain L, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|Z Chain Z, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|L Chain L, Mouse 20s Immunoproteasome
pdb|3UNH|Z Chain Z, Mouse 20s Immunoproteasome
Length = 213
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 49 PGCFNVAD---LGCSSGPNTLLVVSKIIDSIHKLYHQVNKK 86
P C+ + D +GCS L ++KII++ K+Y N K
Sbjct: 41 PKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNK 81
>pdb|3DLI|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|C Chain C, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
Length = 240
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 14/104 (13%)
Query: 48 FPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFE 107
F GC V D+GC G L + I+SI +N+ + +F ++ +D +
Sbjct: 39 FKGCRRVLDIGCGRGEFLELCKEEGIESIGV---DINEDMIKFCEGKFNVVKSDAIEYLK 95
Query: 108 SLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYS 151
SLPD Y M+ F + L P R + YS
Sbjct: 96 SLPDKY-----------LDGVMISHFVEHLDPERLFELLSLCYS 128
>pdb|4IGG|A Chain A, Full-Length Human Alpha-Catenin Crystal Structure
pdb|4IGG|B Chain B, Full-Length Human Alpha-Catenin Crystal Structure
Length = 832
Score = 28.1 bits (61), Expect = 4.5, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 11 GGGGETSYAKNSNIQRTVMSKAWPFLEE----TIKDMFSSSFPGCFNVADLGCS 60
GGGGE +YA N N + ++ F EE ++++ S G +AD C+
Sbjct: 192 GGGGELAYALN-NFDKQIIVDPLSFSEERFRPSLEERLESIISGAALMADSSCT 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,264,909
Number of Sequences: 62578
Number of extensions: 295594
Number of successful extensions: 779
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 761
Number of HSP's gapped (non-prelim): 10
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)