Query 043411
Match_columns 242
No_of_seqs 134 out of 469
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 04:47:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02668 indole-3-acetate carb 100.0 8.4E-76 1.8E-80 545.4 25.7 241 1-242 13-269 (386)
2 PF03492 Methyltransf_7: SAM d 100.0 5.1E-67 1.1E-71 481.2 18.0 205 36-242 1-213 (334)
3 PRK10258 biotin biosynthesis p 99.2 4.8E-11 1E-15 104.8 9.6 128 16-217 18-145 (251)
4 TIGR02072 BioC biotin biosynth 99.2 5.7E-11 1.2E-15 101.8 9.2 135 15-217 6-140 (240)
5 PRK01683 trans-aconitate 2-met 99.0 8.3E-10 1.8E-14 97.2 8.9 126 16-214 7-132 (258)
6 PRK14103 trans-aconitate 2-met 99.0 6.6E-10 1.4E-14 98.1 7.4 124 16-214 5-128 (255)
7 PF08241 Methyltransf_11: Meth 98.7 1.3E-08 2.7E-13 74.6 4.7 95 55-210 1-95 (95)
8 PF13489 Methyltransf_23: Meth 98.7 3.2E-08 7E-13 79.6 5.2 97 49-216 21-119 (161)
9 PLN02233 ubiquinone biosynthes 98.6 3.8E-07 8.3E-12 81.3 11.2 116 50-218 73-188 (261)
10 TIGR00740 methyltransferase, p 98.6 5E-07 1.1E-11 78.9 11.1 114 50-217 53-166 (239)
11 PTZ00098 phosphoethanolamine N 98.6 6E-07 1.3E-11 80.1 11.2 111 49-217 51-161 (263)
12 TIGR02752 MenG_heptapren 2-hep 98.5 3E-07 6.5E-12 79.4 8.4 112 50-217 45-156 (231)
13 PF12847 Methyltransf_18: Meth 98.5 8.2E-07 1.8E-11 67.7 9.5 108 51-212 2-111 (112)
14 COG2226 UbiE Methylase involve 98.5 6.1E-07 1.3E-11 79.5 9.0 113 50-219 51-163 (238)
15 PF08242 Methyltransf_12: Meth 98.5 7.2E-08 1.6E-12 72.6 2.4 98 55-208 1-99 (99)
16 PLN02244 tocopherol O-methyltr 98.5 1.3E-06 2.7E-11 80.9 11.0 110 50-217 118-228 (340)
17 PRK11207 tellurite resistance 98.4 9.6E-07 2.1E-11 75.4 8.9 107 51-215 31-138 (197)
18 PLN02336 phosphoethanolamine N 98.4 8.3E-07 1.8E-11 85.1 9.0 110 50-218 266-375 (475)
19 TIGR00477 tehB tellurite resis 98.4 8.2E-07 1.8E-11 75.7 7.9 104 50-212 30-133 (195)
20 PRK11036 putative S-adenosyl-L 98.4 6.7E-07 1.4E-11 79.0 7.5 107 50-215 44-152 (255)
21 PRK15451 tRNA cmo(5)U34 methyl 98.4 3.3E-06 7.2E-11 74.4 11.6 113 49-215 55-167 (247)
22 COG4106 Tam Trans-aconitate me 98.4 6.6E-07 1.4E-11 78.1 6.0 103 50-215 30-132 (257)
23 PLN02396 hexaprenyldihydroxybe 98.4 1.9E-06 4E-11 79.5 9.1 108 51-216 132-239 (322)
24 PRK00216 ubiE ubiquinone/menaq 98.3 2.1E-06 4.5E-11 73.7 8.5 111 51-217 52-163 (239)
25 PRK00121 trmB tRNA (guanine-N( 98.3 7E-07 1.5E-11 76.6 5.2 141 24-213 14-157 (202)
26 PRK15068 tRNA mo(5)U34 methylt 98.3 1E-06 2.2E-11 81.1 6.0 109 51-217 123-231 (322)
27 PRK12335 tellurite resistance 98.3 1.8E-06 3.8E-11 77.9 7.4 104 51-213 121-224 (287)
28 PF13847 Methyltransf_31: Meth 98.3 3.5E-06 7.7E-11 68.4 8.5 108 50-214 3-112 (152)
29 TIGR03438 probable methyltrans 98.3 6.4E-06 1.4E-10 74.9 10.9 131 34-218 48-183 (301)
30 PF01209 Ubie_methyltran: ubiE 98.3 7.4E-07 1.6E-11 78.5 4.5 113 50-218 47-159 (233)
31 smart00138 MeTrc Methyltransfe 98.3 9.1E-06 2E-10 72.8 11.5 46 135-211 196-241 (264)
32 TIGR01934 MenG_MenH_UbiE ubiqu 98.3 3.9E-06 8.4E-11 71.2 8.5 108 50-215 39-146 (223)
33 PRK06922 hypothetical protein; 98.3 2.5E-06 5.4E-11 84.9 8.0 116 51-212 419-537 (677)
34 PRK11088 rrmA 23S rRNA methylt 98.3 1E-05 2.3E-10 72.2 11.2 75 50-150 85-159 (272)
35 PRK08317 hypothetical protein; 98.2 6.4E-06 1.4E-10 70.2 9.4 108 50-214 19-126 (241)
36 PF03848 TehB: Tellurite resis 98.2 2.4E-06 5.3E-11 73.4 5.5 120 30-214 16-135 (192)
37 smart00828 PKS_MT Methyltransf 98.2 4.5E-06 9.7E-11 71.8 6.8 106 53-215 2-107 (224)
38 TIGR02716 C20_methyl_CrtF C-20 98.2 1.7E-05 3.7E-10 71.9 10.8 112 49-217 148-259 (306)
39 PRK11873 arsM arsenite S-adeno 98.2 1.1E-05 2.4E-10 71.7 9.1 110 50-215 77-186 (272)
40 TIGR03587 Pse_Me-ase pseudamin 98.1 3.3E-05 7.2E-10 66.6 11.6 105 14-155 14-118 (204)
41 KOG2940 Predicted methyltransf 98.1 2.9E-06 6.3E-11 74.9 4.9 106 50-217 72-179 (325)
42 PRK11188 rrmJ 23S rRNA methylt 98.1 3.1E-05 6.7E-10 67.0 11.3 111 50-216 51-169 (209)
43 TIGR00452 methyltransferase, p 98.1 3.6E-06 7.7E-11 77.4 5.6 107 51-215 122-228 (314)
44 PF13649 Methyltransf_25: Meth 98.1 2.5E-06 5.4E-11 64.6 3.2 100 54-206 1-101 (101)
45 PLN02490 MPBQ/MSBQ methyltrans 98.1 8.6E-06 1.9E-10 75.7 7.0 103 51-213 114-216 (340)
46 PRK06202 hypothetical protein; 98.1 0.00015 3.3E-09 63.0 14.2 86 49-157 59-144 (232)
47 PLN02336 phosphoethanolamine N 98.1 1.4E-05 3E-10 76.7 8.3 103 51-213 38-143 (475)
48 KOG1541 Predicted protein carb 98.0 2E-05 4.3E-10 69.2 8.3 138 16-215 21-163 (270)
49 PRK05785 hypothetical protein; 98.0 2.9E-05 6.2E-10 67.9 9.1 77 51-160 52-128 (226)
50 TIGR02469 CbiT precorrin-6Y C5 98.0 2.8E-05 6.2E-10 59.7 7.5 21 193-213 103-123 (124)
51 PRK09489 rsmC 16S ribosomal RN 97.9 2.6E-05 5.6E-10 72.5 7.8 107 51-212 197-303 (342)
52 PF05175 MTS: Methyltransferas 97.9 9E-05 2E-09 61.7 10.2 110 50-212 31-140 (170)
53 PRK15001 SAM-dependent 23S rib 97.9 5.4E-05 1.2E-09 71.3 9.6 110 52-212 230-340 (378)
54 PF05401 NodS: Nodulation prot 97.9 6.4E-05 1.4E-09 64.8 9.0 94 49-213 42-147 (201)
55 TIGR00091 tRNA (guanine-N(7)-) 97.9 2.7E-05 5.9E-10 66.2 6.3 115 50-213 16-133 (194)
56 PRK11705 cyclopropane fatty ac 97.8 0.00015 3.3E-09 68.3 11.1 106 50-217 167-272 (383)
57 TIGR00537 hemK_rel_arch HemK-r 97.8 0.0001 2.2E-09 61.6 8.8 125 51-216 20-144 (179)
58 TIGR00138 gidB 16S rRNA methyl 97.8 8.6E-05 1.9E-09 62.9 7.5 75 51-150 43-117 (181)
59 PF00891 Methyltransf_2: O-met 97.8 0.0002 4.3E-09 62.5 10.0 105 49-219 99-206 (241)
60 PRK00107 gidB 16S rRNA methylt 97.8 0.00011 2.4E-09 62.7 7.8 103 49-213 44-146 (187)
61 PRK08287 cobalt-precorrin-6Y C 97.7 0.00024 5.1E-09 59.7 9.6 20 50-69 31-50 (187)
62 KOG3010 Methyltransferase [Gen 97.7 0.00012 2.6E-09 65.0 7.9 47 137-217 95-141 (261)
63 TIGR01983 UbiG ubiquinone bios 97.7 8.8E-05 1.9E-09 63.5 7.0 107 50-215 45-152 (224)
64 PRK14121 tRNA (guanine-N(7)-)- 97.7 0.00011 2.3E-09 69.6 7.5 111 51-212 123-235 (390)
65 cd02440 AdoMet_MTases S-adenos 97.6 0.00025 5.4E-09 50.9 7.3 102 53-211 1-103 (107)
66 TIGR03534 RF_mod_PrmC protein- 97.6 0.00036 7.8E-09 60.6 9.6 128 50-212 87-217 (251)
67 KOG2361 Predicted methyltransf 97.6 0.00037 7.9E-09 61.9 9.4 152 17-218 30-189 (264)
68 COG2230 Cfa Cyclopropane fatty 97.6 0.0006 1.3E-08 61.9 11.0 36 182-217 146-181 (283)
69 TIGR03533 L3_gln_methyl protei 97.6 0.00036 7.7E-09 63.1 9.4 124 51-212 122-251 (284)
70 PF05891 Methyltransf_PK: AdoM 97.6 3.5E-05 7.7E-10 67.3 2.2 105 49-212 54-161 (218)
71 PRK05134 bifunctional 3-demeth 97.5 0.0003 6.6E-09 60.8 7.6 44 139-215 111-154 (233)
72 PRK13944 protein-L-isoaspartat 97.5 0.00068 1.5E-08 58.1 9.3 82 51-154 73-154 (205)
73 KOG1270 Methyltransferases [Co 97.5 0.00016 3.5E-09 64.8 4.9 29 189-217 172-200 (282)
74 COG2227 UbiG 2-polyprenyl-3-me 97.4 0.00022 4.8E-09 63.2 5.4 107 51-217 60-166 (243)
75 COG2813 RsmC 16S RNA G1207 met 97.4 0.00033 7.2E-09 64.0 6.6 109 51-213 159-267 (300)
76 PRK00312 pcm protein-L-isoaspa 97.4 0.0019 4.1E-08 55.3 10.8 20 50-69 78-97 (212)
77 PRK07580 Mg-protoporphyrin IX 97.4 0.0028 6.2E-08 54.3 12.0 20 50-69 63-82 (230)
78 COG4123 Predicted O-methyltran 97.4 0.00077 1.7E-08 60.1 8.6 127 49-213 43-171 (248)
79 TIGR00080 pimt protein-L-isoas 97.4 0.0011 2.5E-08 57.0 9.2 79 50-151 77-155 (215)
80 PRK13942 protein-L-isoaspartat 97.3 0.0019 4.1E-08 55.8 10.0 80 50-152 76-155 (212)
81 PF06080 DUF938: Protein of un 97.3 0.0021 4.5E-08 55.8 10.1 117 53-218 28-147 (204)
82 PRK11805 N5-glutamine S-adenos 97.3 0.0021 4.5E-08 58.9 10.7 74 52-149 135-208 (307)
83 TIGR03840 TMPT_Se_Te thiopurin 97.3 0.0023 4.9E-08 55.7 10.2 119 50-216 34-156 (213)
84 TIGR00438 rrmJ cell division p 97.3 0.0016 3.6E-08 54.7 8.7 25 190-214 124-148 (188)
85 PRK04266 fibrillarin; Provisio 97.3 0.0018 3.9E-08 56.8 9.2 20 50-69 72-91 (226)
86 TIGR02081 metW methionine bios 97.3 0.00048 1E-08 58.3 5.4 20 138-157 71-90 (194)
87 PF03141 Methyltransf_29: Puta 97.3 0.0005 1.1E-08 66.5 6.0 107 49-216 116-223 (506)
88 PF02353 CMAS: Mycolic acid cy 97.3 0.0013 2.8E-08 59.3 8.4 29 189-217 143-171 (273)
89 TIGR00536 hemK_fam HemK family 97.3 0.0015 3.3E-08 58.8 8.8 127 52-212 116-244 (284)
90 PLN03075 nicotianamine synthas 97.2 0.0028 6.2E-08 57.9 10.3 110 50-212 123-233 (296)
91 PRK14966 unknown domain/N5-glu 97.2 0.0019 4.1E-08 61.7 9.4 123 51-210 252-379 (423)
92 KOG3178 Hydroxyindole-O-methyl 97.2 0.0045 9.6E-08 57.6 11.4 143 9-217 138-280 (342)
93 TIGR02021 BchM-ChlM magnesium 97.2 0.0045 9.7E-08 53.2 10.9 51 18-69 24-74 (219)
94 PF05148 Methyltransf_8: Hypot 97.2 0.0011 2.4E-08 57.8 6.8 92 49-217 71-163 (219)
95 PRK10901 16S rRNA methyltransf 97.2 0.0022 4.9E-08 61.1 9.4 127 51-216 245-376 (427)
96 PRK09328 N5-glutamine S-adenos 97.1 0.0017 3.8E-08 57.3 7.8 128 50-212 108-238 (275)
97 PHA03411 putative methyltransf 97.1 0.0026 5.7E-08 57.6 8.6 118 51-217 65-188 (279)
98 PRK01544 bifunctional N5-gluta 97.1 0.0019 4.1E-08 63.1 8.3 129 51-211 139-268 (506)
99 TIGR00563 rsmB ribosomal RNA s 97.1 0.0046 9.9E-08 58.9 10.7 130 51-217 239-373 (426)
100 TIGR00406 prmA ribosomal prote 97.0 0.0016 3.4E-08 58.9 6.6 23 194-216 241-263 (288)
101 PTZ00146 fibrillarin; Provisio 97.0 0.01 2.2E-07 54.3 11.6 20 51-70 133-152 (293)
102 PRK14903 16S rRNA methyltransf 96.9 0.0054 1.2E-07 58.7 9.2 131 51-218 238-372 (431)
103 PRK13255 thiopurine S-methyltr 96.9 0.0098 2.1E-07 51.9 10.0 35 32-69 22-56 (218)
104 KOG1540 Ubiquinone biosynthesi 96.9 0.0044 9.5E-08 55.7 7.8 121 50-218 100-220 (296)
105 PF13659 Methyltransf_26: Meth 96.9 0.0021 4.5E-08 49.2 5.1 112 52-213 2-116 (117)
106 PF03291 Pox_MCEL: mRNA cappin 96.8 0.0012 2.6E-08 61.2 4.2 49 137-214 138-188 (331)
107 KOG3045 Predicted RNA methylas 96.8 0.0022 4.7E-08 57.8 5.5 54 129-216 215-268 (325)
108 COG2242 CobL Precorrin-6B meth 96.8 0.013 2.9E-07 50.1 10.1 38 166-217 103-140 (187)
109 PRK14904 16S rRNA methyltransf 96.8 0.0076 1.6E-07 57.8 9.6 128 51-217 251-382 (445)
110 PRK14967 putative methyltransf 96.8 0.0051 1.1E-07 53.2 7.5 125 51-215 37-162 (223)
111 PF08003 Methyltransf_9: Prote 96.8 0.0077 1.7E-07 55.3 8.8 111 51-219 116-226 (315)
112 PRK14901 16S rRNA methyltransf 96.7 0.014 3.1E-07 55.7 10.9 128 51-216 253-388 (434)
113 PRK01544 bifunctional N5-gluta 96.7 0.0032 6.9E-08 61.5 6.2 138 24-211 324-461 (506)
114 KOG2904 Predicted methyltransf 96.7 0.042 9E-07 50.0 12.7 28 191-218 264-291 (328)
115 PRK14968 putative methyltransf 96.7 0.014 3E-07 48.1 9.1 24 190-213 126-149 (188)
116 KOG1500 Protein arginine N-met 96.6 0.0026 5.6E-08 59.3 4.9 117 50-224 177-293 (517)
117 PRK00377 cbiT cobalt-precorrin 96.6 0.0068 1.5E-07 51.5 7.2 20 50-69 40-59 (198)
118 PRK14902 16S rRNA methyltransf 96.6 0.019 4.2E-07 54.9 11.0 127 51-215 251-382 (444)
119 COG2890 HemK Methylase of poly 96.6 0.015 3.3E-07 52.6 9.8 121 53-211 113-237 (280)
120 TIGR03439 methyl_EasF probable 96.5 0.026 5.6E-07 52.2 10.6 137 34-218 61-203 (319)
121 TIGR03704 PrmC_rel_meth putati 96.5 0.023 5E-07 50.4 9.7 22 191-212 195-216 (251)
122 KOG4300 Predicted methyltransf 96.5 0.027 5.9E-07 49.4 9.6 111 50-218 76-188 (252)
123 PF02390 Methyltransf_4: Putat 96.5 0.0025 5.4E-08 54.6 3.3 113 52-211 19-132 (195)
124 PLN02232 ubiquinone biosynthes 96.4 0.0034 7.4E-08 51.8 4.0 54 131-217 33-86 (160)
125 PRK00517 prmA ribosomal protei 96.4 0.015 3.2E-07 51.4 7.7 22 194-215 195-216 (250)
126 KOG1499 Protein arginine N-met 96.3 0.0048 1E-07 57.4 4.5 105 50-209 60-164 (346)
127 PF10294 Methyltransf_16: Puta 96.3 0.015 3.2E-07 48.7 7.1 124 50-233 45-171 (173)
128 PLN02585 magnesium protoporphy 96.3 0.058 1.3E-06 49.7 11.4 19 51-69 145-163 (315)
129 PRK00811 spermidine synthase; 96.3 0.02 4.4E-07 51.7 8.3 114 49-211 75-190 (283)
130 PF05185 PRMT5: PRMT5 arginine 96.2 0.0063 1.4E-07 58.7 5.0 108 51-209 187-294 (448)
131 TIGR01177 conserved hypothetic 96.2 0.065 1.4E-06 49.2 11.5 25 192-216 274-298 (329)
132 COG2264 PrmA Ribosomal protein 96.1 0.029 6.4E-07 51.4 8.6 31 31-69 151-181 (300)
133 TIGR00446 nop2p NOL1/NOP2/sun 96.1 0.045 9.7E-07 48.9 9.3 30 188-217 175-204 (264)
134 TIGR00417 speE spermidine synt 95.9 0.015 3.2E-07 52.0 5.5 19 193-211 167-185 (270)
135 PRK13943 protein-L-isoaspartat 95.8 0.087 1.9E-06 48.7 10.1 20 50-69 80-99 (322)
136 PRK07402 precorrin-6B methylas 95.8 0.048 1E-06 46.1 7.8 24 191-214 121-144 (196)
137 KOG1331 Predicted methyltransf 95.6 0.03 6.4E-07 50.9 6.3 136 17-221 17-152 (293)
138 PRK04457 spermidine synthase; 95.6 0.045 9.8E-07 48.9 7.4 23 194-216 159-181 (262)
139 PHA03412 putative methyltransf 95.3 0.032 7E-07 49.6 5.4 20 51-70 50-69 (241)
140 PRK01581 speE spermidine synth 95.3 0.037 7.9E-07 52.2 5.9 18 194-211 250-267 (374)
141 smart00650 rADc Ribosomal RNA 95.2 0.087 1.9E-06 43.5 7.3 21 50-70 13-33 (169)
142 KOG3191 Predicted N6-DNA-methy 95.1 0.32 6.9E-06 41.9 10.5 144 32-218 28-174 (209)
143 KOG1975 mRNA cap methyltransfe 94.9 0.085 1.8E-06 49.1 7.0 118 50-214 117-239 (389)
144 COG1352 CheR Methylase of chem 94.9 0.4 8.6E-06 43.4 11.3 127 50-219 96-245 (268)
145 PLN02672 methionine S-methyltr 94.9 0.064 1.4E-06 56.9 7.0 32 52-98 120-151 (1082)
146 PF07021 MetW: Methionine bios 94.8 0.033 7.1E-07 48.0 3.9 29 129-157 60-90 (193)
147 PLN02366 spermidine synthase 94.6 0.084 1.8E-06 48.5 6.3 20 49-68 90-109 (308)
148 PF01739 CheR: CheR methyltran 94.2 0.17 3.7E-06 43.6 6.9 44 137-211 131-174 (196)
149 COG0220 Predicted S-adenosylme 94.1 0.11 2.4E-06 45.7 5.7 114 51-211 49-163 (227)
150 PRK15128 23S rRNA m(5)C1962 me 94.0 0.36 7.8E-06 45.9 9.4 28 186-213 313-340 (396)
151 PRK11783 rlmL 23S rRNA m(2)G24 94.0 0.41 8.9E-06 48.7 10.3 27 187-213 631-657 (702)
152 PF01728 FtsJ: FtsJ-like methy 93.9 0.34 7.5E-06 40.1 8.1 37 50-100 23-59 (181)
153 KOG2899 Predicted methyltransf 93.9 0.42 9.1E-06 43.0 8.8 45 139-210 163-207 (288)
154 PLN02781 Probable caffeoyl-CoA 93.8 0.12 2.6E-06 45.4 5.4 35 50-98 68-102 (234)
155 PF01135 PCMT: Protein-L-isoas 93.7 0.23 5.1E-06 43.1 6.9 20 50-69 72-91 (209)
156 PRK03612 spermidine synthase; 93.3 0.24 5.2E-06 48.6 7.0 21 49-69 296-316 (521)
157 PRK11933 yebU rRNA (cytosine-C 93.3 0.31 6.7E-06 47.4 7.6 129 51-216 114-246 (470)
158 PRK00274 ksgA 16S ribosomal RN 93.1 0.039 8.5E-07 49.4 1.1 125 6-145 8-156 (272)
159 PRK10611 chemotaxis methyltran 92.9 0.32 6.9E-06 44.4 6.7 41 140-211 221-261 (287)
160 COG4976 Predicted methyltransf 92.8 0.13 2.9E-06 45.8 3.9 29 190-218 203-231 (287)
161 PRK13256 thiopurine S-methyltr 92.2 0.79 1.7E-05 40.4 8.1 132 32-215 28-166 (226)
162 PF13679 Methyltransf_32: Meth 90.5 0.46 9.9E-06 38.2 4.6 40 29-70 6-45 (141)
163 PF05219 DREV: DREV methyltran 90.3 0.97 2.1E-05 40.8 6.8 20 50-69 94-113 (265)
164 COG2519 GCD14 tRNA(1-methylade 90.2 2.1 4.6E-05 38.5 8.8 103 51-215 95-198 (256)
165 PF11968 DUF3321: Putative met 90.1 1.4 2.9E-05 38.8 7.3 134 7-217 6-154 (219)
166 KOG1271 Methyltransferases [Ge 89.8 3.6 7.8E-05 35.7 9.5 17 51-67 68-84 (227)
167 PF06325 PrmA: Ribosomal prote 89.3 0.35 7.5E-06 44.3 3.2 32 30-69 149-180 (295)
168 PRK04338 N(2),N(2)-dimethylgua 89.0 2.3 5.1E-05 40.2 8.7 63 12-98 28-90 (382)
169 TIGR00478 tly hemolysin TlyA f 88.1 0.65 1.4E-05 40.9 4.0 20 50-69 75-94 (228)
170 PTZ00338 dimethyladenosine tra 87.4 0.78 1.7E-05 41.9 4.3 52 50-102 36-99 (294)
171 PRK04148 hypothetical protein; 87.4 1.9 4.1E-05 35.1 6.0 19 50-68 16-35 (134)
172 COG2263 Predicted RNA methylas 87.1 0.37 8E-06 41.6 1.8 18 51-68 46-63 (198)
173 PRK03522 rumB 23S rRNA methylu 87.1 0.77 1.7E-05 41.9 4.0 19 51-69 174-192 (315)
174 TIGR00755 ksgA dimethyladenosi 86.1 0.93 2E-05 39.9 3.9 22 50-71 29-50 (253)
175 COG0144 Sun tRNA and rRNA cyto 85.4 8.5 0.00018 36.0 10.1 133 51-218 157-294 (355)
176 PLN02589 caffeoyl-CoA O-methyl 84.5 2.5 5.4E-05 37.7 5.9 22 50-71 79-100 (247)
177 PF06859 Bin3: Bicoid-interact 84.1 0.91 2E-05 35.8 2.6 42 143-211 2-43 (110)
178 PF12147 Methyltransf_20: Puta 84.1 3.3 7.1E-05 38.2 6.5 54 30-98 117-170 (311)
179 COG0500 SmtA SAM-dependent met 83.1 5.1 0.00011 28.9 6.2 25 194-218 137-161 (257)
180 PRK14896 ksgA 16S ribosomal RN 82.9 0.69 1.5E-05 41.0 1.7 48 50-101 29-88 (258)
181 PF08704 GCD14: tRNA methyltra 82.8 8.2 0.00018 34.5 8.4 23 50-72 40-62 (247)
182 PRK10909 rsmD 16S rRNA m(2)G96 82.8 1.6 3.5E-05 37.6 3.8 19 51-69 54-72 (199)
183 COG2518 Pcm Protein-L-isoaspar 81.6 1.3 2.9E-05 38.6 2.9 20 50-69 72-91 (209)
184 PLN02476 O-methyltransferase 80.6 6.4 0.00014 35.8 7.0 21 50-70 118-138 (278)
185 PF09243 Rsm22: Mitochondrial 79.8 17 0.00038 32.5 9.6 17 50-66 33-49 (274)
186 PRK00536 speE spermidine synth 78.4 16 0.00035 32.9 8.8 100 48-211 70-170 (262)
187 PRK13168 rumA 23S rRNA m(5)U19 78.3 3.4 7.4E-05 39.6 4.8 19 51-69 298-316 (443)
188 PF07942 N2227: N2227-like pro 77.7 15 0.00032 33.3 8.5 38 32-69 36-75 (270)
189 PF05724 TPMT: Thiopurine S-me 77.3 5.9 0.00013 34.5 5.6 130 32-213 22-156 (218)
190 PF07757 AdoMet_MTase: Predict 76.5 3 6.5E-05 32.9 3.1 20 50-69 58-77 (112)
191 COG4122 Predicted O-methyltran 76.3 9.7 0.00021 33.5 6.7 23 50-72 59-81 (219)
192 PF02384 N6_Mtase: N-6 DNA Met 75.7 8.5 0.00018 34.6 6.4 135 50-214 46-185 (311)
193 PLN02823 spermine synthase 73.6 10 0.00022 35.3 6.5 21 49-69 102-122 (336)
194 TIGR02085 meth_trns_rumB 23S r 73.5 4.6 9.9E-05 37.9 4.2 18 52-69 235-252 (374)
195 PF01269 Fibrillarin: Fibrilla 73.5 25 0.00054 31.2 8.4 19 201-219 167-185 (229)
196 PF03514 GRAS: GRAS domain fam 73.0 50 0.0011 31.1 11.0 44 50-101 110-153 (374)
197 PF08123 DOT1: Histone methyla 72.7 7.9 0.00017 33.5 5.2 23 189-212 135-157 (205)
198 COG0030 KsgA Dimethyladenosine 71.9 5.4 0.00012 35.9 4.1 103 51-157 31-158 (259)
199 TIGR00479 rumA 23S rRNA (uraci 71.1 6.3 0.00014 37.4 4.6 19 51-69 293-311 (431)
200 COG1189 Predicted rRNA methyla 70.1 5.4 0.00012 35.6 3.6 33 36-70 67-99 (245)
201 PRK05031 tRNA (uracil-5-)-meth 69.0 7.6 0.00016 36.3 4.6 19 52-70 208-226 (362)
202 KOG1269 SAM-dependent methyltr 68.2 11 0.00024 35.5 5.5 109 52-217 112-220 (364)
203 TIGR00095 RNA methyltransferas 68.0 3.6 7.8E-05 34.9 2.0 19 51-69 50-68 (189)
204 TIGR02143 trmA_only tRNA (urac 67.4 8.1 0.00018 36.0 4.4 19 52-70 199-217 (353)
205 COG4627 Uncharacterized protei 64.3 7.5 0.00016 32.9 3.1 53 132-215 37-89 (185)
206 KOG3420 Predicted RNA methylas 63.2 5.3 0.00011 33.5 2.0 17 50-66 48-64 (185)
207 PRK11727 23S rRNA mA1618 methy 62.3 5.6 0.00012 36.9 2.3 19 50-68 114-132 (321)
208 KOG4589 Cell division protein 61.8 11 0.00024 32.8 3.8 21 50-70 69-89 (232)
209 KOG1122 tRNA and rRNA cytosine 61.6 63 0.0014 31.4 9.1 134 50-218 241-377 (460)
210 PRK11760 putative 23S rRNA C24 61.5 9.6 0.00021 35.9 3.7 20 50-69 211-230 (357)
211 COG2521 Predicted archaeal met 61.1 14 0.00031 33.2 4.5 62 128-219 189-254 (287)
212 TIGR01444 fkbM_fam methyltrans 59.6 5.7 0.00012 31.1 1.6 17 53-69 1-17 (143)
213 KOG3115 Methyltransferase-like 58.7 5.5 0.00012 35.1 1.4 18 51-68 61-78 (249)
214 PF01234 NNMT_PNMT_TEMT: NNMT/ 56.4 11 0.00023 33.9 3.0 48 141-217 157-204 (256)
215 TIGR02987 met_A_Alw26 type II 51.8 18 0.00039 35.3 4.0 42 50-98 31-72 (524)
216 PF01189 Nol1_Nop2_Fmu: NOL1/N 49.6 14 0.00029 33.5 2.5 128 51-217 86-224 (283)
217 PF09445 Methyltransf_15: RNA 49.5 11 0.00023 31.7 1.7 19 53-71 2-20 (163)
218 PF02636 Methyltransf_28: Puta 48.4 24 0.00051 31.0 3.8 23 50-72 18-40 (252)
219 PF01596 Methyltransf_3: O-met 46.5 15 0.00033 31.6 2.3 23 50-72 45-67 (205)
220 KOG1501 Arginine N-methyltrans 46.3 16 0.00035 35.8 2.5 22 49-70 65-86 (636)
221 COG0275 Predicted S-adenosylme 44.3 26 0.00055 32.5 3.5 37 179-215 211-247 (314)
222 PF02475 Met_10: Met-10+ like- 44.2 69 0.0015 27.6 6.0 34 50-98 101-134 (200)
223 COG4076 Predicted RNA methylas 44.1 53 0.0012 28.8 5.2 63 33-102 21-94 (252)
224 PRK00050 16S rRNA m(4)C1402 me 44.1 48 0.0011 30.4 5.3 35 181-215 205-239 (296)
225 TIGR00006 S-adenosyl-methyltra 44.0 49 0.0011 30.5 5.3 34 182-215 210-243 (305)
226 PRK00050 16S rRNA m(4)C1402 me 40.7 27 0.00058 32.0 3.0 22 51-72 20-41 (296)
227 PF07091 FmrO: Ribosomal RNA m 39.5 24 0.00052 31.7 2.4 35 34-69 90-124 (251)
228 TIGR00308 TRM1 tRNA(guanine-26 39.5 34 0.00075 32.3 3.7 52 14-71 14-65 (374)
229 PF09597 IGR: IGR protein moti 38.6 31 0.00068 23.9 2.4 28 180-207 12-39 (57)
230 KOG2198 tRNA cytosine-5-methyl 37.7 1E+02 0.0022 29.4 6.3 48 50-108 155-202 (375)
231 PF00398 RrnaAD: Ribosomal RNA 37.3 62 0.0013 28.6 4.8 86 50-139 30-142 (262)
232 PRK11524 putative methyltransf 36.4 61 0.0013 29.0 4.6 21 191-211 59-79 (284)
233 KOG0820 Ribosomal RNA adenine 36.1 1.2E+02 0.0027 28.0 6.4 52 49-101 57-120 (315)
234 smart00400 ZnF_CHCC zinc finge 35.7 33 0.00071 23.0 2.1 22 51-72 21-42 (55)
235 KOG2920 Predicted methyltransf 33.4 21 0.00046 32.6 1.1 34 31-68 100-134 (282)
236 PF10357 Kin17_mid: Domain of 32.8 48 0.001 26.8 3.0 27 175-201 9-35 (127)
237 PF01795 Methyltransf_5: MraW 30.9 53 0.0011 30.4 3.3 33 183-215 212-244 (310)
238 COG1565 Uncharacterized conser 30.3 79 0.0017 30.1 4.4 24 49-72 76-99 (370)
239 PF04816 DUF633: Family of unk 29.4 32 0.00069 29.7 1.5 41 54-109 1-41 (205)
240 PF09119 SicP-binding: SicP bi 28.5 1E+02 0.0022 23.0 3.8 43 146-201 4-50 (81)
241 COG0293 FtsJ 23S rRNA methylas 28.3 1E+02 0.0023 26.8 4.5 50 16-71 14-66 (205)
242 PF03141 Methyltransf_29: Puta 28.2 1.5E+02 0.0033 29.3 6.1 101 11-151 332-436 (506)
243 COG3963 Phospholipid N-methylt 28.2 85 0.0018 27.0 3.8 111 51-220 49-164 (194)
244 KOG4058 Uncharacterized conser 27.0 57 0.0012 27.5 2.6 61 6-66 23-88 (199)
245 PHA03297 envelope glycoprotein 26.1 20 0.00044 29.9 -0.2 56 49-104 38-103 (185)
246 PRK13699 putative methylase; P 25.9 76 0.0017 27.6 3.3 19 192-210 52-70 (227)
247 COG1942 Uncharacterized protei 25.8 2.2E+02 0.0048 20.3 5.2 41 59-99 8-49 (69)
248 COG1092 Predicted SAM-dependen 25.1 2E+02 0.0044 27.5 6.3 31 185-215 309-339 (393)
249 COG0421 SpeE Spermidine syntha 24.5 5.3E+02 0.012 23.4 9.1 18 194-211 172-189 (282)
250 KOG3790 Uncharacterized conser 24.2 56 0.0012 31.9 2.3 21 50-72 211-231 (529)
251 PRK02289 4-oxalocrotonate taut 24.1 1.1E+02 0.0024 20.6 3.2 36 62-98 11-47 (60)
252 TIGR03357 VI_zyme type VI secr 23.9 3.6E+02 0.0077 21.1 8.1 30 30-59 24-53 (133)
253 PF13260 DUF4051: Protein of u 22.3 1.3E+02 0.0029 20.2 3.1 27 180-206 22-48 (54)
254 PF03445 DUF294: Putative nucl 22.3 1.3E+02 0.0027 24.1 3.7 34 177-210 80-113 (138)
255 PF05206 TRM13: Methyltransfer 22.0 1.4E+02 0.003 26.8 4.3 25 49-73 17-41 (259)
256 PF05958 tRNA_U5-meth_tr: tRNA 21.4 1.2E+02 0.0026 28.2 3.9 18 53-70 199-216 (352)
257 COG4427 Uncharacterized protei 20.4 1.1E+02 0.0025 28.1 3.3 17 48-64 138-154 (350)
258 PF02527 GidB: rRNA small subu 20.3 1.2E+02 0.0026 25.6 3.4 16 53-68 51-66 (184)
No 1
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=8.4e-76 Score=545.35 Aligned_cols=241 Identities=40% Similarity=0.704 Sum_probs=220.3
Q ss_pred CCccccccccCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCC-CccEEeeecCCCCcchHHHHHHHHHHHHHH
Q 043411 1 MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFP-GCFNVADLGCSSGPNTLLVVSKIIDSIHKL 79 (242)
Q Consensus 1 ~~~~~~~~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~-~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~ 79 (242)
|+++++|||+||+|++||++||.+|++++..++|+|+++|++++....| ++++|||||||+|+||+.+++.||++|+++
T Consensus 13 m~~~~~l~M~gG~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~ 92 (386)
T PLN02668 13 MKLEKLLCMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMSKR 92 (386)
T ss_pred ceeccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999988654434 689999999999999999999999999999
Q ss_pred HhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhh-------hhcCCCCceeeccccccccccCCCCceeEEEcccce
Q 043411 80 YHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERI-------KKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSV 152 (242)
Q Consensus 80 ~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l-------~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~al 152 (242)
|.+.+..+|++||||||||+||||+||++|+.+++.+ ...+.++||++|||||||+||||++|+||+||++||
T Consensus 93 ~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~sl 172 (386)
T PLN02668 93 YESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAFSL 172 (386)
T ss_pred hhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCCCceEEEEeeccc
Confidence 9877777889999999999999999999999876542 112334699999999999999999999999999999
Q ss_pred eecccCCCcccC------CCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecccCCCCCCCCh-h
Q 043411 153 HWLSKVPENLEN------NKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKD-C 225 (242)
Q Consensus 153 hWLs~~P~~~~~------nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~-~ 225 (242)
||||++|+.+.+ |||+||+.+++ +.|.+||++||++||..||++||+||+|||+|+++++||++.++..++ .
T Consensus 173 HWLS~vP~~l~d~~s~~~Nkg~iyi~~~s-~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~ 251 (386)
T PLN02668 173 HWLSQVPESVTDKRSAAYNKGRVFIHGAS-ESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTSVDPTDQGGA 251 (386)
T ss_pred eecccCchhhccCCcccccCCceEecCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCCCCCcccCCch
Confidence 999999999874 99999999887 889999999999999999999999999999999999999988877665 6
Q ss_pred hHHHHH-HHHHHHHHHcC
Q 043411 226 CCLWEL-LTKSLIQLANE 242 (242)
Q Consensus 226 ~~~~~~-l~~~l~dmv~e 242 (242)
+.+|++ ++++|+|||.|
T Consensus 252 ~~~~~~~l~~al~dlv~e 269 (386)
T PLN02668 252 GLLFGTHFQDAWDDLVQE 269 (386)
T ss_pred hHHHHHHHHHHHHHHHHc
Confidence 778887 99999999986
No 2
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=5.1e-67 Score=481.16 Aligned_cols=205 Identities=57% Similarity=1.018 Sum_probs=175.6
Q ss_pred HHHHHHhhhc-cCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhc-CCCCceEEEecCCCCCchHHHhhcCchhH
Q 043411 36 LEETIKDMFS-SSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVN-KKLPEFQVFLNDLPGNDFNSIFESLPDFY 113 (242)
Q Consensus 36 l~~ai~~~~~-~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~-~~~~~~qv~~nDLp~NDFn~lf~~l~~~~ 113 (242)
|++||.+++. ...+++++|||||||+|+||+.+++.||++|+++|++.+ +++|+|||||||||+||||+||++|+.+.
T Consensus 1 ~~~ai~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~ 80 (334)
T PF03492_consen 1 LEEAIKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQ 80 (334)
T ss_dssp -HHHHHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHH
T ss_pred ChHHHHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhh
Confidence 5788998875 346789999999999999999999999999999998765 67889999999999999999999999987
Q ss_pred HhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccC------CCCceEEcCCCChHHHHHHHHHH
Q 043411 114 ERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLEN------NKRDIYITKSSPPSVCQAFWEQF 187 (242)
Q Consensus 114 ~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~------nkg~i~~~~~s~~~v~~ay~~q~ 187 (242)
+++.. .++||++|||||||+||||++||||+||++||||||++|+.+.+ |||+||+.++++++|.+||++||
T Consensus 81 ~~~~~--~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf 158 (334)
T PF03492_consen 81 QSLKK--FRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQF 158 (334)
T ss_dssp HHHHH--TTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHH
T ss_pred hccCC--CceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHH
Confidence 77654 67999999999999999999999999999999999999999988 99999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCceEEEEecccCCCCCCCChhhHHHHHHHHHHHHHHcC
Q 043411 188 QRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSLIQLANE 242 (242)
Q Consensus 188 ~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~l~~~l~dmv~e 242 (242)
++||.+||++||+||+|||+|+++++||++.++...+.+.+|++|+++|+|||.|
T Consensus 159 ~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~e 213 (334)
T PF03492_consen 159 QKDFSSFLKARAEELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAE 213 (334)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhheeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999998777776778999999999999986
No 3
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.22 E-value=4.8e-11 Score=104.80 Aligned_cols=128 Identities=17% Similarity=0.246 Sum_probs=85.4
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEec
Q 043411 16 TSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLN 95 (242)
Q Consensus 16 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~n 95 (242)
.+|.+++.+|+.+...+...+.. ...-+|+|+|||+|.++..+. +. ..+++..
T Consensus 18 ~~Y~~~~~~q~~~a~~l~~~l~~----------~~~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~~~ 70 (251)
T PRK10258 18 AHYEQHAELQRQSADALLAMLPQ----------RKFTHVLDAGCGPGWMSRYWR--------ER---------GSQVTAL 70 (251)
T ss_pred HhHhHHHHHHHHHHHHHHHhcCc----------cCCCeEEEeeCCCCHHHHHHH--------Hc---------CCeEEEE
Confidence 57999999999888877655431 235789999999998776542 11 2567888
Q ss_pred CCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCC
Q 043411 96 DLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSS 175 (242)
Q Consensus 96 DLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s 175 (242)
|+.. ..............| +.+++..-.+|++++|+++|+.++||..+.+.
T Consensus 71 D~s~-----------~~l~~a~~~~~~~~~---~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~--------------- 121 (251)
T PRK10258 71 DLSP-----------PMLAQARQKDAADHY---LAGDIESLPLATATFDLAWSNLAVQWCGNLST--------------- 121 (251)
T ss_pred ECCH-----------HHHHHHHhhCCCCCE---EEcCcccCcCCCCcEEEEEECchhhhcCCHHH---------------
Confidence 8752 111111110001223 33466444568889999999999999655322
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecccCC
Q 043411 176 PPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSI 217 (242)
Q Consensus 176 ~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~ 217 (242)
+|..-.+-|+|||.+++++++.++
T Consensus 122 ------------------~l~~~~~~Lk~gG~l~~~~~~~~~ 145 (251)
T PRK10258 122 ------------------ALRELYRVVRPGGVVAFTTLVQGS 145 (251)
T ss_pred ------------------HHHHHHHHcCCCeEEEEEeCCCCc
Confidence 666667788999999999998754
No 4
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.21 E-value=5.7e-11 Score=101.79 Aligned_cols=135 Identities=19% Similarity=0.315 Sum_probs=93.0
Q ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEe
Q 043411 15 ETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFL 94 (242)
Q Consensus 15 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~ 94 (242)
..+|.+.+..|+.+...+.+.+.... ...+.+|+|+|||+|..+..+.+.. +..+++.
T Consensus 6 ~~~y~~~~~~q~~~~~~l~~~~~~~~-------~~~~~~vLDlG~G~G~~~~~l~~~~---------------~~~~~~~ 63 (240)
T TIGR02072 6 AKTYDRHAKIQREMAKRLLALLKEKG-------IFIPASVLDIGCGTGYLTRALLKRF---------------PQAEFIA 63 (240)
T ss_pred hhchhHHHHHHHHHHHHHHHHhhhhc-------cCCCCeEEEECCCccHHHHHHHHhC---------------CCCcEEE
Confidence 46799999999998888887776431 1245789999999999877665321 2466777
Q ss_pred cCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCC
Q 043411 95 NDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKS 174 (242)
Q Consensus 95 nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~ 174 (242)
.|+.....+..-+.++ .+-.| +-+++.+..+|++++|++++..++||+.+.
T Consensus 64 ~D~~~~~~~~~~~~~~----------~~~~~---~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~---------------- 114 (240)
T TIGR02072 64 LDISAGMLAQAKTKLS----------ENVQF---ICGDAEKLPLEDSSFDLIVSNLALQWCDDL---------------- 114 (240)
T ss_pred EeChHHHHHHHHHhcC----------CCCeE---EecchhhCCCCCCceeEEEEhhhhhhccCH----------------
Confidence 7875322222211111 01122 344666667789999999999999996432
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecccCC
Q 043411 175 SPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSI 217 (242)
Q Consensus 175 s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~ 217 (242)
..+|+...+-|+|||+++++.++...
T Consensus 115 -----------------~~~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 115 -----------------SQALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred -----------------HHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 22788888889999999999876644
No 5
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.04 E-value=8.3e-10 Score=97.23 Aligned_cols=126 Identities=18% Similarity=0.260 Sum_probs=80.6
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEec
Q 043411 16 TSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLN 95 (242)
Q Consensus 16 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~n 95 (242)
..|.+++..|.+....++..+. .....+|+|+|||+|..+..+.+.. |..+|+..
T Consensus 7 ~~Y~~~~~~~~~~~~~ll~~~~----------~~~~~~vLDiGcG~G~~~~~la~~~---------------~~~~v~gv 61 (258)
T PRK01683 7 SLYLKFEDERTRPARDLLARVP----------LENPRYVVDLGCGPGNSTELLVERW---------------PAARITGI 61 (258)
T ss_pred HHHHHHHHHhhcHHHHHHhhCC----------CcCCCEEEEEcccCCHHHHHHHHHC---------------CCCEEEEE
Confidence 5699988888666554433221 1345799999999999987665221 24678888
Q ss_pred CCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCC
Q 043411 96 DLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSS 175 (242)
Q Consensus 96 DLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s 175 (242)
|+.. +.-...+. .. .+--| +.+++ ..+.|++++|+++|+.++||+.+.+
T Consensus 62 D~s~-~~i~~a~~------~~----~~~~~---~~~d~-~~~~~~~~fD~v~~~~~l~~~~d~~---------------- 110 (258)
T PRK01683 62 DSSP-AMLAEARS------RL----PDCQF---VEADI-ASWQPPQALDLIFANASLQWLPDHL---------------- 110 (258)
T ss_pred ECCH-HHHHHHHH------hC----CCCeE---EECch-hccCCCCCccEEEEccChhhCCCHH----------------
Confidence 8762 11111111 00 01122 23355 3456778999999999999964421
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecc
Q 043411 176 PPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLG 214 (242)
Q Consensus 176 ~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g 214 (242)
.+|+.-.+-|+|||.+++.+.+
T Consensus 111 -----------------~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 111 -----------------ELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred -----------------HHHHHHHHhcCCCcEEEEECCC
Confidence 2677777889999999998643
No 6
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.02 E-value=6.6e-10 Score=98.11 Aligned_cols=124 Identities=15% Similarity=0.228 Sum_probs=81.2
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEec
Q 043411 16 TSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLN 95 (242)
Q Consensus 16 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~n 95 (242)
..|.+++..|.+....++..+. .....+|+|+|||+|..+..+.+.. |..+|+--
T Consensus 5 ~~y~~~~~~~~~~~~~ll~~l~----------~~~~~~vLDlGcG~G~~~~~l~~~~---------------p~~~v~gv 59 (255)
T PRK14103 5 DVYLAFADHRGRPFYDLLARVG----------AERARRVVDLGCGPGNLTRYLARRW---------------PGAVIEAL 59 (255)
T ss_pred HHHHHHHhHhhCHHHHHHHhCC----------CCCCCEEEEEcCCCCHHHHHHHHHC---------------CCCEEEEE
Confidence 5799999999877655443322 1245899999999998876554211 23567777
Q ss_pred CCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCC
Q 043411 96 DLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSS 175 (242)
Q Consensus 96 DLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s 175 (242)
|+-. +.....+. . +-.| +.+++ +.+.|.+++|+++|..++||+.+.+.
T Consensus 60 D~s~-~~~~~a~~----------~--~~~~---~~~d~-~~~~~~~~fD~v~~~~~l~~~~d~~~--------------- 107 (255)
T PRK14103 60 DSSP-EMVAAARE----------R--GVDA---RTGDV-RDWKPKPDTDVVVSNAALQWVPEHAD--------------- 107 (255)
T ss_pred ECCH-HHHHHHHh----------c--CCcE---EEcCh-hhCCCCCCceEEEEehhhhhCCCHHH---------------
Confidence 7741 11111111 0 1112 33566 45667889999999999999754222
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecc
Q 043411 176 PPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLG 214 (242)
Q Consensus 176 ~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g 214 (242)
+|+.-.+-|+|||++++...+
T Consensus 108 ------------------~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 108 ------------------LLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred ------------------HHHHHHHhCCCCcEEEEEcCC
Confidence 566667788999999998765
No 7
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.74 E-value=1.3e-08 Score=74.62 Aligned_cols=95 Identities=22% Similarity=0.269 Sum_probs=59.3
Q ss_pred eeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccccc
Q 043411 55 ADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFY 134 (242)
Q Consensus 55 aDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy 134 (242)
+|+|||+|.++..+.+. +..+++-.|... -. +...++.. ....+- -+-+++.
T Consensus 1 LdiG~G~G~~~~~l~~~----------------~~~~v~~~D~~~-----~~--~~~~~~~~---~~~~~~--~~~~d~~ 52 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR----------------GGASVTGIDISE-----EM--LEQARKRL---KNEGVS--FRQGDAE 52 (95)
T ss_dssp EEET-TTSHHHHHHHHT----------------TTCEEEEEES-H-----HH--HHHHHHHT---TTSTEE--EEESBTT
T ss_pred CEecCcCCHHHHHHHhc----------------cCCEEEEEeCCH-----HH--HHHHHhcc---cccCch--heeehHH
Confidence 69999999998877622 136677666652 10 01111111 111111 3445787
Q ss_pred cccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411 135 QRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 135 ~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
.--||++|+|++++..++||+. |...+++.-.+=|||||++++
T Consensus 53 ~l~~~~~sfD~v~~~~~~~~~~---------------------------------~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 53 DLPFPDNSFDVVFSNSVLHHLE---------------------------------DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SSSS-TT-EEEEEEESHGGGSS---------------------------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred hCccccccccccccccceeecc---------------------------------CHHHHHHHHHHHcCcCeEEeC
Confidence 7788999999999999999971 233377788888899999986
No 8
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.66 E-value=3.2e-08 Score=79.63 Aligned_cols=97 Identities=22% Similarity=0.306 Sum_probs=67.2
Q ss_pred CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411 49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG 128 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~ 128 (242)
+...+|+|+|||+|.++..+. +. . .+++..|.-. ...... ..
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~--------~~--------~-~~~~g~D~~~-----------~~~~~~----------~~ 62 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALA--------KR--------G-FEVTGVDISP-----------QMIEKR----------NV 62 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHH--------HT--------T-SEEEEEESSH-----------HHHHHT----------TS
T ss_pred CCCCEEEEEcCCCCHHHHHHH--------Hh--------C-CEEEEEECCH-----------HHHhhh----------hh
Confidence 457899999999998765442 11 1 3777777652 111000 01
Q ss_pred cccccc--cccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411 129 MLGSFY--QRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 129 vpgSFy--~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG 206 (242)
.+..|. ...+|++++|+|+|+.++||+.+.+ .+|+.-.+-|+|||
T Consensus 63 ~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~---------------------------------~~l~~l~~~LkpgG 109 (161)
T PF13489_consen 63 VFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPE---------------------------------EFLKELSRLLKPGG 109 (161)
T ss_dssp EEEEEECHTHHCHSSSEEEEEEESSGGGSSHHH---------------------------------HHHHHHHHCEEEEE
T ss_pred hhhhhhhhhhhccccchhhHhhHHHHhhcccHH---------------------------------HHHHHHHHhcCCCC
Confidence 222332 4456889999999999999977522 28888888999999
Q ss_pred eEEEEecccC
Q 043411 207 RMFLTFLGRS 216 (242)
Q Consensus 207 ~lvl~~~g~~ 216 (242)
+++++.+.+.
T Consensus 110 ~l~~~~~~~~ 119 (161)
T PF13489_consen 110 YLVISDPNRD 119 (161)
T ss_dssp EEEEEEEBTT
T ss_pred EEEEEEcCCc
Confidence 9999999874
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.61 E-value=3.8e-07 Score=81.30 Aligned_cols=116 Identities=16% Similarity=0.132 Sum_probs=69.9
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..+..+...+ .+..+|+--|+.. +.-...+..... .......++ .-+
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~--------------~~~~~V~gvD~S~-~ml~~A~~r~~~---~~~~~~~~i--~~~ 132 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKV--------------GSDGKVMGLDFSS-EQLAVAASRQEL---KAKSCYKNI--EWI 132 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHh--------------CCCCEEEEEECCH-HHHHHHHHHhhh---hhhccCCCe--EEE
Confidence 45799999999999876554221 1234666666652 111111110000 000001121 123
Q ss_pred ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411 130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
.++..+--+|++++|++++++++||+.+.. .+|+.-.+-|+|||+++
T Consensus 133 ~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~---------------------------------~~l~ei~rvLkpGG~l~ 179 (261)
T PLN02233 133 EGDATDLPFDDCYFDAITMGYGLRNVVDRL---------------------------------KAMQEMYRVLKPGSRVS 179 (261)
T ss_pred EcccccCCCCCCCEeEEEEecccccCCCHH---------------------------------HHHHHHHHHcCcCcEEE
Confidence 345544457889999999999999965422 26777777889999999
Q ss_pred EEecccCCC
Q 043411 210 LTFLGRSIA 218 (242)
Q Consensus 210 l~~~g~~~~ 218 (242)
+..+.+.+.
T Consensus 180 i~d~~~~~~ 188 (261)
T PLN02233 180 ILDFNKSTQ 188 (261)
T ss_pred EEECCCCCc
Confidence 999987653
No 10
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.59 E-value=5e-07 Score=78.93 Aligned_cols=114 Identities=19% Similarity=0.190 Sum_probs=70.7
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..+..+.+.+ ..|..+++--|+-. ++-...+. .+.... ...-+..+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~-------------~~p~~~v~gvD~s~-~ml~~a~~------~~~~~~-~~~~v~~~ 111 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNI-------------NQPNVKIIGIDNSQ-PMVERCRQ------HIAAYH-SEIPVEIL 111 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhc-------------CCCCCeEEEEeCCH-HHHHHHHH------HHHhcC-CCCCeEEE
Confidence 45689999999999887776332 12357788888742 22222221 111100 01112234
Q ss_pred ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411 130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
.+++.+-.++ ..|++++.+++||++. .|...+|+.-.+-|+|||+++
T Consensus 112 ~~d~~~~~~~--~~d~v~~~~~l~~~~~-------------------------------~~~~~~l~~i~~~LkpgG~l~ 158 (239)
T TIGR00740 112 CNDIRHVEIK--NASMVILNFTLQFLPP-------------------------------EDRIALLTKIYEGLNPNGVLV 158 (239)
T ss_pred ECChhhCCCC--CCCEEeeecchhhCCH-------------------------------HHHHHHHHHHHHhcCCCeEEE
Confidence 5677543333 5789999999999743 123347888888999999999
Q ss_pred EEecccCC
Q 043411 210 LTFLGRSI 217 (242)
Q Consensus 210 l~~~g~~~ 217 (242)
++...+..
T Consensus 159 i~d~~~~~ 166 (239)
T TIGR00740 159 LSEKFRFE 166 (239)
T ss_pred EeecccCC
Confidence 98765543
No 11
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.57 E-value=6e-07 Score=80.12 Aligned_cols=111 Identities=15% Similarity=0.084 Sum_probs=71.2
Q ss_pred CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411 49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG 128 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~ 128 (242)
+...+|+|+|||+|..+..+.. . ...+|+.-|+.. +.....+... . ...+ +..
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~--------~--------~~~~v~giD~s~-~~~~~a~~~~------~--~~~~--i~~ 103 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINE--------K--------YGAHVHGVDICE-KMVNIAKLRN------S--DKNK--IEF 103 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHh--------h--------cCCEEEEEECCH-HHHHHHHHHc------C--cCCc--eEE
Confidence 3457999999999998776541 1 125777778752 1111111110 0 0011 223
Q ss_pred cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411 129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM 208 (242)
Q Consensus 129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l 208 (242)
+.+++...-+|++++|+++|..++++++ . .|...+|+.-++-|+|||++
T Consensus 104 ~~~D~~~~~~~~~~FD~V~s~~~l~h~~---~----------------------------~d~~~~l~~i~r~LkPGG~l 152 (263)
T PTZ00098 104 EANDILKKDFPENTFDMIYSRDAILHLS---Y----------------------------ADKKKLFEKCYKWLKPNGIL 152 (263)
T ss_pred EECCcccCCCCCCCeEEEEEhhhHHhCC---H----------------------------HHHHHHHHHHHHHcCCCcEE
Confidence 4557766668899999999988776532 1 24445888888899999999
Q ss_pred EEEecccCC
Q 043411 209 FLTFLGRSI 217 (242)
Q Consensus 209 vl~~~g~~~ 217 (242)
+++-+....
T Consensus 153 vi~d~~~~~ 161 (263)
T PTZ00098 153 LITDYCADK 161 (263)
T ss_pred EEEEecccc
Confidence 998876544
No 12
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.54 E-value=3e-07 Score=79.45 Aligned_cols=112 Identities=12% Similarity=0.191 Sum_probs=70.1
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..+..+.+.+ .+..+++--|+.. ..-...+. .+......+ +..+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~--------------~~~~~v~gvD~s~-~~~~~a~~------~~~~~~~~~--v~~~ 101 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAV--------------GPEGHVIGLDFSE-NMLSVGRQ------KVKDAGLHN--VELV 101 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHh--------------CCCCEEEEEECCH-HHHHHHHH------HHHhcCCCc--eEEE
Confidence 35799999999999887665322 1236778888752 22211111 111111112 2234
Q ss_pred ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411 130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
.+++..-.+|++++|++++..++||+++.. .+|+.-.+-|+|||+++
T Consensus 102 ~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~---------------------------------~~l~~~~~~Lk~gG~l~ 148 (231)
T TIGR02752 102 HGNAMELPFDDNSFDYVTIGFGLRNVPDYM---------------------------------QVLREMYRVVKPGGKVV 148 (231)
T ss_pred EechhcCCCCCCCccEEEEecccccCCCHH---------------------------------HHHHHHHHHcCcCeEEE
Confidence 456655456889999999999999964321 26666677789999999
Q ss_pred EEecccCC
Q 043411 210 LTFLGRSI 217 (242)
Q Consensus 210 l~~~g~~~ 217 (242)
+...+.++
T Consensus 149 ~~~~~~~~ 156 (231)
T TIGR02752 149 CLETSQPT 156 (231)
T ss_pred EEECCCCC
Confidence 87766543
No 13
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.53 E-value=8.2e-07 Score=67.70 Aligned_cols=108 Identities=17% Similarity=0.185 Sum_probs=63.3
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
.-+|+|+|||+|..++.+.+.. +..+++--|.-. ++-.+.+.... . .....++ .-+.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~---------------~~~~v~gvD~s~-~~~~~a~~~~~---~--~~~~~~i--~~~~ 58 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLF---------------PGARVVGVDISP-EMLEIARERAA---E--EGLSDRI--TFVQ 58 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHH---------------TTSEEEEEESSH-HHHHHHHHHHH---H--TTTTTTE--EEEE
T ss_pred CCEEEEEcCcCCHHHHHHHhcC---------------CCCEEEEEeCCH-HHHHHHHHHHH---h--cCCCCCe--EEEE
Confidence 3689999999999999887411 235566556531 22222221110 0 0011121 2233
Q ss_pred cccccccC-CCCceeEEEccc-ceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411 131 GSFYQRLF-PSRGINFIHSSY-SVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM 208 (242)
Q Consensus 131 gSFy~~l~-p~~svdl~~Ss~-alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l 208 (242)
+++ .... ..+.+|++++.. ++|++-.. .+..++|+.-.+-|+|||+|
T Consensus 59 ~d~-~~~~~~~~~~D~v~~~~~~~~~~~~~------------------------------~~~~~~l~~~~~~L~pgG~l 107 (112)
T PF12847_consen 59 GDA-EFDPDFLEPFDLVICSGFTLHFLLPL------------------------------DERRRVLERIRRLLKPGGRL 107 (112)
T ss_dssp SCC-HGGTTTSSCEEEEEECSGSGGGCCHH------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred Ccc-ccCcccCCCCCEEEECCCccccccch------------------------------hHHHHHHHHHHHhcCCCcEE
Confidence 455 2222 334599999988 66643221 34556898999999999999
Q ss_pred EEEe
Q 043411 209 FLTF 212 (242)
Q Consensus 209 vl~~ 212 (242)
+++.
T Consensus 108 vi~~ 111 (112)
T PF12847_consen 108 VINT 111 (112)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9975
No 14
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.49 E-value=6.1e-07 Score=79.47 Aligned_cols=113 Identities=17% Similarity=0.270 Sum_probs=76.2
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
+..+|+|+|||||--|+.+.+.+ + +-+|+.-|.. .=--... +++..+....+ +.-|
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~-----------g----~g~v~~~D~s-----~~ML~~a--~~k~~~~~~~~--i~fv 106 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSV-----------G----TGEVVGLDIS-----ESMLEVA--REKLKKKGVQN--VEFV 106 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhc-----------C----CceEEEEECC-----HHHHHHH--HHHhhccCccc--eEEE
Confidence 47999999999999999887444 1 3455555544 3221111 12222111112 3345
Q ss_pred ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411 130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
-|+..+-.||++|+|++.+++.||++.+.+. .|+.-++=|+|||+++
T Consensus 107 ~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~---------------------------------aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 107 VGDAENLPFPDNSFDAVTISFGLRNVTDIDK---------------------------------ALKEMYRVLKPGGRLL 153 (238)
T ss_pred EechhhCCCCCCccCEEEeeehhhcCCCHHH---------------------------------HHHHHHHhhcCCeEEE
Confidence 5588888899999999999999999887666 3444444459999999
Q ss_pred EEecccCCCC
Q 043411 210 LTFLGRSIAD 219 (242)
Q Consensus 210 l~~~g~~~~~ 219 (242)
+.-+.+....
T Consensus 154 vle~~~p~~~ 163 (238)
T COG2226 154 VLEFSKPDNP 163 (238)
T ss_pred EEEcCCCCch
Confidence 9999987654
No 15
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.48 E-value=7.2e-08 Score=72.57 Aligned_cols=98 Identities=17% Similarity=0.218 Sum_probs=48.0
Q ss_pred eeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcC-CCCceeecccccc
Q 043411 55 ADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDK-FGPCFIAGMLGSF 133 (242)
Q Consensus 55 aDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~-~~~~f~~~vpgSF 133 (242)
+|+|||+|..+..++... |..+++..|... ++-... ++.+.... .....+.....+.
T Consensus 1 LdiGcG~G~~~~~l~~~~---------------~~~~~~~~D~s~-~~l~~a------~~~~~~~~~~~~~~~~~~~~~~ 58 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL---------------PDARYTGVDISP-SMLERA------RERLAELGNDNFERLRFDVLDL 58 (99)
T ss_dssp -EESTTTS-TTTTHHHHC----------------EEEEEEEESSS-STTSTT------CCCHHHCT---EEEEE--SSS-
T ss_pred CEeCccChHHHHHHHHhC---------------CCCEEEEEECCH-HHHHHH------HHHhhhcCCcceeEEEeecCCh
Confidence 699999999998877333 358888888863 111111 11111100 0111222222222
Q ss_pred ccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411 134 YQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM 208 (242)
Q Consensus 134 y~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l 208 (242)
.. ..+++++|+|+++.++||+. |+..+|+.-++-|+|||+|
T Consensus 59 ~~-~~~~~~fD~V~~~~vl~~l~---------------------------------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 59 FD-YDPPESFDLVVASNVLHHLE---------------------------------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---CCC----SEEEEE-TTS--S----------------------------------HHHHHHHHTTT-TSS-EE
T ss_pred hh-cccccccceehhhhhHhhhh---------------------------------hHHHHHHHHHHHcCCCCCC
Confidence 12 22237999999999999982 2334888888999999986
No 16
>PLN02244 tocopherol O-methyltransferase
Probab=98.47 E-value=1.3e-06 Score=80.90 Aligned_cols=110 Identities=14% Similarity=0.143 Sum_probs=67.1
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCC-CCceeec
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKF-GPCFIAG 128 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~-~~~f~~~ 128 (242)
...+|+|+|||+|.++..+.+.. ..+|+--|+..+ .-...+.+ ...... .+ +..
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~----------------g~~v~gvD~s~~-~i~~a~~~------~~~~g~~~~--v~~ 172 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY----------------GANVKGITLSPV-QAARANAL------AAAQGLSDK--VSF 172 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc----------------CCEEEEEECCHH-HHHHHHHH------HHhcCCCCc--eEE
Confidence 45799999999999988776321 134555555421 11111111 110000 11 122
Q ss_pred cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411 129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM 208 (242)
Q Consensus 129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l 208 (242)
+-+++.+.-||++++|+++|..++|++.+.+ .+|+.-.+-|+|||++
T Consensus 173 ~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~---------------------------------~~l~e~~rvLkpGG~l 219 (340)
T PLN02244 173 QVADALNQPFEDGQFDLVWSMESGEHMPDKR---------------------------------KFVQELARVAAPGGRI 219 (340)
T ss_pred EEcCcccCCCCCCCccEEEECCchhccCCHH---------------------------------HHHHHHHHHcCCCcEE
Confidence 3346666667899999999999988754311 2666667778999999
Q ss_pred EEEecccCC
Q 043411 209 FLTFLGRSI 217 (242)
Q Consensus 209 vl~~~g~~~ 217 (242)
+++......
T Consensus 220 vi~~~~~~~ 228 (340)
T PLN02244 220 IIVTWCHRD 228 (340)
T ss_pred EEEEecccc
Confidence 998876543
No 17
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.45 E-value=9.6e-07 Score=75.40 Aligned_cols=107 Identities=17% Similarity=0.226 Sum_probs=63.5
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||+|.+++.+.+ + -.+|+.-|+.. +.-...+... ......+ +..+.
T Consensus 31 ~~~vLDiGcG~G~~a~~La~--------~---------g~~V~gvD~S~-~~i~~a~~~~------~~~~~~~--v~~~~ 84 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAA--------N---------GFDVTAWDKNP-MSIANLERIK------AAENLDN--LHTAV 84 (197)
T ss_pred CCcEEEECCCCCHHHHHHHH--------C---------CCEEEEEeCCH-HHHHHHHHHH------HHcCCCc--ceEEe
Confidence 47999999999999987752 1 14566667642 1112222111 1111111 22333
Q ss_pred cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE-
Q 043411 131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF- 209 (242)
Q Consensus 131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv- 209 (242)
.++.. +-+++++|+++|+.++||++. .|...+++.-++-|+|||+++
T Consensus 85 ~d~~~-~~~~~~fD~I~~~~~~~~~~~-------------------------------~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 85 VDLNN-LTFDGEYDFILSTVVLMFLEA-------------------------------KTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred cChhh-CCcCCCcCEEEEecchhhCCH-------------------------------HHHHHHHHHHHHHcCCCcEEEE
Confidence 45533 333568999999999999642 133447777788889999954
Q ss_pred EEeccc
Q 043411 210 LTFLGR 215 (242)
Q Consensus 210 l~~~g~ 215 (242)
+..+..
T Consensus 133 ~~~~~~ 138 (197)
T PRK11207 133 VAAMDT 138 (197)
T ss_pred EEEecC
Confidence 455543
No 18
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.43 E-value=8.3e-07 Score=85.05 Aligned_cols=110 Identities=16% Similarity=0.250 Sum_probs=70.9
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..++.+.+.. ..+++--|+.. +.-...+.. ... ...-+..+
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~----------------~~~v~gvDiS~-~~l~~A~~~------~~~---~~~~v~~~ 319 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF----------------DVHVVGIDLSV-NMISFALER------AIG---RKCSVEFE 319 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc----------------CCEEEEEECCH-HHHHHHHHH------hhc---CCCceEEE
Confidence 45799999999998776554211 24677777752 211111110 000 01112234
Q ss_pred ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411 130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
-+++....+|++++|+++|..+++|+.+.+. +|+.-++-|+|||+++
T Consensus 320 ~~d~~~~~~~~~~fD~I~s~~~l~h~~d~~~---------------------------------~l~~~~r~LkpgG~l~ 366 (475)
T PLN02336 320 VADCTKKTYPDNSFDVIYSRDTILHIQDKPA---------------------------------LFRSFFKWLKPGGKVL 366 (475)
T ss_pred EcCcccCCCCCCCEEEEEECCcccccCCHHH---------------------------------HHHHHHHHcCCCeEEE
Confidence 4577777788899999999999999754222 6777777889999999
Q ss_pred EEecccCCC
Q 043411 210 LTFLGRSIA 218 (242)
Q Consensus 210 l~~~g~~~~ 218 (242)
++.+.+...
T Consensus 367 i~~~~~~~~ 375 (475)
T PLN02336 367 ISDYCRSPG 375 (475)
T ss_pred EEEeccCCC
Confidence 998876543
No 19
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.43 E-value=8.2e-07 Score=75.71 Aligned_cols=104 Identities=15% Similarity=0.212 Sum_probs=61.8
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
.+.+|+|+|||+|.+++.+.+ + -.+|+--|+.. +.-...+... ...+. + +...
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~--------~---------g~~V~~iD~s~-~~l~~a~~~~------~~~~~-~--v~~~ 82 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSL--------A---------GYDVRAWDHNP-ASIASVLDMK------ARENL-P--LRTD 82 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHH--------C---------CCeEEEEECCH-HHHHHHHHHH------HHhCC-C--ceeE
Confidence 357999999999999987762 1 14566667642 2222222111 11111 1 1122
Q ss_pred ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411 130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
..++ ....+++++|+++|+.++||++. .++..+++.-++-|+|||+++
T Consensus 83 ~~d~-~~~~~~~~fD~I~~~~~~~~~~~-------------------------------~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 83 AYDI-NAAALNEDYDFIFSTVVFMFLQA-------------------------------GRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred eccc-hhccccCCCCEEEEecccccCCH-------------------------------HHHHHHHHHHHHHhCCCcEEE
Confidence 2233 12223568999999999999643 234447888888899999965
Q ss_pred EEe
Q 043411 210 LTF 212 (242)
Q Consensus 210 l~~ 212 (242)
+..
T Consensus 131 i~~ 133 (195)
T TIGR00477 131 IVA 133 (195)
T ss_pred EEE
Confidence 543
No 20
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.42 E-value=6.7e-07 Score=79.02 Aligned_cols=107 Identities=16% Similarity=0.182 Sum_probs=64.9
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcC-CCCceeec
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDK-FGPCFIAG 128 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~-~~~~f~~~ 128 (242)
.+.+|+|+|||+|..+..+.+ . ..+|+..|+.. +.-...+. ...... ..++ ..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~--------~---------g~~v~~vD~s~-~~l~~a~~------~~~~~g~~~~v--~~ 97 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAE--------L---------GHQVILCDLSA-EMIQRAKQ------AAEAKGVSDNM--QF 97 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHH--------c---------CCEEEEEECCH-HHHHHHHH------HHHhcCCccce--EE
Confidence 467999999999998877651 1 14667777642 22222221 111100 0111 11
Q ss_pred cccccccc-cCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411 129 MLGSFYQR-LFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR 207 (242)
Q Consensus 129 vpgSFy~~-l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~ 207 (242)
+-+++.+- -++++++|++++..++||+.+.+. +|+.-++-|+|||+
T Consensus 98 ~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~---------------------------------~l~~~~~~LkpgG~ 144 (255)
T PRK11036 98 IHCAAQDIAQHLETPVDLILFHAVLEWVADPKS---------------------------------VLQTLWSVLRPGGA 144 (255)
T ss_pred EEcCHHHHhhhcCCCCCEEEehhHHHhhCCHHH---------------------------------HHHHHHHHcCCCeE
Confidence 23354332 146789999999999999764222 56666677899999
Q ss_pred EEEEeccc
Q 043411 208 MFLTFLGR 215 (242)
Q Consensus 208 lvl~~~g~ 215 (242)
+++.+...
T Consensus 145 l~i~~~n~ 152 (255)
T PRK11036 145 LSLMFYNA 152 (255)
T ss_pred EEEEEECc
Confidence 99876543
No 21
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.41 E-value=3.3e-06 Score=74.44 Aligned_cols=113 Identities=19% Similarity=0.196 Sum_probs=67.8
Q ss_pred CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411 49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG 128 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~ 128 (242)
+...+|+|+|||+|.+++.+...+ ..|..+++.-|+.. ++-...+.. +...... .-+..
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~-------------~~~~~~v~gvD~S~-~ml~~A~~~------~~~~~~~-~~v~~ 113 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNI-------------HHDNCKIIAIDNSP-AMIERCRRH------IDAYKAP-TPVDV 113 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhc-------------CCCCCeEEEEeCCH-HHHHHHHHH------HHhcCCC-CCeEE
Confidence 345799999999999887765322 11346777777741 333222221 1110000 01222
Q ss_pred cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411 129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM 208 (242)
Q Consensus 129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l 208 (242)
+.+++.+- |....|++++..++||++. . +...+|+.-++-|+|||.|
T Consensus 114 ~~~d~~~~--~~~~~D~vv~~~~l~~l~~--~-----------------------------~~~~~l~~i~~~LkpGG~l 160 (247)
T PRK15451 114 IEGDIRDI--AIENASMVVLNFTLQFLEP--S-----------------------------ERQALLDKIYQGLNPGGAL 160 (247)
T ss_pred EeCChhhC--CCCCCCEEehhhHHHhCCH--H-----------------------------HHHHHHHHHHHhcCCCCEE
Confidence 44566443 3335899999999999753 1 1223677778888999999
Q ss_pred EEEeccc
Q 043411 209 FLTFLGR 215 (242)
Q Consensus 209 vl~~~g~ 215 (242)
+++..-.
T Consensus 161 ~l~e~~~ 167 (247)
T PRK15451 161 VLSEKFS 167 (247)
T ss_pred EEEEecC
Confidence 9986443
No 22
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.37 E-value=6.6e-07 Score=78.13 Aligned_cols=103 Identities=19% Similarity=0.373 Sum_probs=67.6
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
.+-+|.|||||.|..|.++.+ +. |..+++--|-. +.+-..-......-.|.-+
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~--------Rw-------P~A~i~GiDsS-----------~~Mla~Aa~rlp~~~f~~a- 82 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLAR--------RW-------PDAVITGIDSS-----------PAMLAKAAQRLPDATFEEA- 82 (257)
T ss_pred ccceeeecCCCCCHHHHHHHH--------hC-------CCCeEeeccCC-----------HHHHHHHHHhCCCCceecc-
Confidence 478999999999999988873 32 34555544433 2211111111111122222
Q ss_pred ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411 130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
+- ...-|+...|+++|..++|||.+=|. .|.+--.+|.|||.|+
T Consensus 83 --Dl-~~w~p~~~~dllfaNAvlqWlpdH~~---------------------------------ll~rL~~~L~Pgg~LA 126 (257)
T COG4106 83 --DL-RTWKPEQPTDLLFANAVLQWLPDHPE---------------------------------LLPRLVSQLAPGGVLA 126 (257)
T ss_pred --cH-hhcCCCCccchhhhhhhhhhccccHH---------------------------------HHHHHHHhhCCCceEE
Confidence 22 55679999999999999999876555 5556667889999999
Q ss_pred EEeccc
Q 043411 210 LTFLGR 215 (242)
Q Consensus 210 l~~~g~ 215 (242)
+.+.+.
T Consensus 127 VQmPdN 132 (257)
T COG4106 127 VQMPDN 132 (257)
T ss_pred EECCCc
Confidence 998764
No 23
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.36 E-value=1.9e-06 Score=79.53 Aligned_cols=108 Identities=16% Similarity=0.119 Sum_probs=66.7
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||+|..+..+.. . ..+|+--|+-. +.-...+. ...... ..--+..+.
T Consensus 132 g~~ILDIGCG~G~~s~~La~--------~---------g~~V~GID~s~-~~i~~Ar~------~~~~~~-~~~~i~~~~ 186 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLAR--------M---------GATVTGVDAVD-KNVKIARL------HADMDP-VTSTIEYLC 186 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHH--------c---------CCEEEEEeCCH-HHHHHHHH------HHHhcC-cccceeEEe
Confidence 46999999999998775541 1 24666666652 11111111 000000 000112233
Q ss_pred cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411 131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
+++.+-.++++++|++++..++||+.+.+. ||+.-++-|+|||++++
T Consensus 187 ~dae~l~~~~~~FD~Vi~~~vLeHv~d~~~---------------------------------~L~~l~r~LkPGG~lii 233 (322)
T PLN02396 187 TTAEKLADEGRKFDAVLSLEVIEHVANPAE---------------------------------FCKSLSALTIPNGATVL 233 (322)
T ss_pred cCHHHhhhccCCCCEEEEhhHHHhcCCHHH---------------------------------HHHHHHHHcCCCcEEEE
Confidence 455433356789999999999999766333 78888888999999999
Q ss_pred EecccC
Q 043411 211 TFLGRS 216 (242)
Q Consensus 211 ~~~g~~ 216 (242)
+++.+.
T Consensus 234 st~nr~ 239 (322)
T PLN02396 234 STINRT 239 (322)
T ss_pred EECCcC
Confidence 987654
No 24
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.34 E-value=2.1e-06 Score=73.69 Aligned_cols=111 Identities=14% Similarity=0.188 Sum_probs=70.2
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhc-CCCCceeecc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKD-KFGPCFIAGM 129 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~-~~~~~f~~~v 129 (242)
..+|+|+|||+|..+..+.... ++..+++..|+..+ .-...+.. .... ...++ ..+
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~--------------~~~~~v~~~D~s~~-~~~~a~~~------~~~~~~~~~~--~~~ 108 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAV--------------GKTGEVVGLDFSEG-MLAVGREK------LRDLGLSGNV--EFV 108 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHc--------------CCCCeEEEEeCCHH-HHHHHHHh------hcccccccCe--EEE
Confidence 4799999999999887765322 11467888888531 11111111 0000 00111 123
Q ss_pred ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411 130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
.+++.+..++++++|++++++++|++++.+. +|+...+-|+|||+++
T Consensus 109 ~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~---------------------------------~l~~~~~~L~~gG~li 155 (239)
T PRK00216 109 QGDAEALPFPDNSFDAVTIAFGLRNVPDIDK---------------------------------ALREMYRVLKPGGRLV 155 (239)
T ss_pred ecccccCCCCCCCccEEEEecccccCCCHHH---------------------------------HHHHHHHhccCCcEEE
Confidence 3466665567889999999999998655332 6777778899999999
Q ss_pred EEecccCC
Q 043411 210 LTFLGRSI 217 (242)
Q Consensus 210 l~~~g~~~ 217 (242)
+.......
T Consensus 156 ~~~~~~~~ 163 (239)
T PRK00216 156 ILEFSKPT 163 (239)
T ss_pred EEEecCCC
Confidence 87765543
No 25
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.33 E-value=7e-07 Score=76.60 Aligned_cols=141 Identities=16% Similarity=0.185 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchH
Q 043411 24 IQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFN 103 (242)
Q Consensus 24 ~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn 103 (242)
+|+.+.....|.+-...............+|+|+|||+|..+..+.+.. |..+|+-.|.-. +.-
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDiGcGtG~~~~~la~~~---------------p~~~v~gVD~s~-~~i 77 (202)
T PRK00121 14 GQQRAIEELWPRLSPAPLDWAELFGNDAPIHLEIGFGKGEFLVEMAKAN---------------PDINFIGIEVHE-PGV 77 (202)
T ss_pred chhhhhcccchhhcCCCCCHHHHcCCCCCeEEEEccCCCHHHHHHHHHC---------------CCccEEEEEech-HHH
Confidence 4556666666666333222211111246899999999999988775221 235677777652 111
Q ss_pred HHhhcCchhHHhhhhcCCCCceeecccccc---ccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHH
Q 043411 104 SIFESLPDFYERIKKDKFGPCFIAGMLGSF---YQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVC 180 (242)
Q Consensus 104 ~lf~~l~~~~~~l~~~~~~~~f~~~vpgSF---y~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~ 180 (242)
...+. ........++. .+-++. +.+.++++++|.+++.+..+|...... +..
T Consensus 78 ~~a~~------~~~~~~~~~v~--~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~-----~~~------------ 132 (202)
T PRK00121 78 GKALK------KIEEEGLTNLR--LLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHH-----KRR------------ 132 (202)
T ss_pred HHHHH------HHHHcCCCCEE--EEecCHHHHHHHHcCccccceEEEECCCCCCCcccc-----ccc------------
Confidence 11110 01111112322 233454 234578899999999888777543111 000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCceEEEEec
Q 043411 181 QAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFL 213 (242)
Q Consensus 181 ~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~ 213 (242)
.+...||+.-++-|+|||++++++.
T Consensus 133 --------~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 133 --------LVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred --------cCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 0123377777888899999999764
No 26
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.30 E-value=1e-06 Score=81.14 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=67.0
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
.-+|+|+|||+|..++.++. . + + -+|+--| |+-.+...++..... .. ...++ ..++
T Consensus 123 g~~VLDIGCG~G~~~~~la~--------~----g---~-~~V~GiD-~S~~~l~q~~a~~~~---~~--~~~~i--~~~~ 178 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLG--------A----G---A-KLVVGID-PSQLFLCQFEAVRKL---LG--NDQRA--HLLP 178 (322)
T ss_pred CCEEEEeccCCcHHHHHHHH--------c----C---C-CEEEEEc-CCHHHHHHHHHHHHh---cC--CCCCe--EEEe
Confidence 46999999999999886651 1 1 2 2466677 333333333222110 00 01122 2344
Q ss_pred cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411 131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
+++ +.+-.++++|+++|..++||..+ ...+|+.-++-|+|||.+++
T Consensus 179 ~d~-e~lp~~~~FD~V~s~~vl~H~~d---------------------------------p~~~L~~l~~~LkpGG~lvl 224 (322)
T PRK15068 179 LGI-EQLPALKAFDTVFSMGVLYHRRS---------------------------------PLDHLKQLKDQLVPGGELVL 224 (322)
T ss_pred CCH-HHCCCcCCcCEEEECChhhccCC---------------------------------HHHHHHHHHHhcCCCcEEEE
Confidence 566 34433789999999999988433 12277888888999999999
Q ss_pred EecccCC
Q 043411 211 TFLGRSI 217 (242)
Q Consensus 211 ~~~g~~~ 217 (242)
..+..+.
T Consensus 225 ~~~~i~~ 231 (322)
T PRK15068 225 ETLVIDG 231 (322)
T ss_pred EEEEecC
Confidence 8775543
No 27
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.30 E-value=1.8e-06 Score=77.88 Aligned_cols=104 Identities=21% Similarity=0.285 Sum_probs=62.5
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
+-+|+|+|||+|.+++.+.+ . -.+|+.-|... ..-...+.. ...... + +..+.
T Consensus 121 ~~~vLDlGcG~G~~~~~la~--------~---------g~~V~avD~s~-~ai~~~~~~------~~~~~l-~--v~~~~ 173 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLAL--------L---------GFDVTAVDINQ-QSLENLQEI------AEKENL-N--IRTGL 173 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHH--------C---------CCEEEEEECCH-HHHHHHHHH------HHHcCC-c--eEEEE
Confidence 35999999999999987752 1 14566666642 111111111 111111 1 12223
Q ss_pred cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411 131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
.++-. .-+++++|+|+|..++|+++. .++..+|+.-.+-|+|||++++
T Consensus 174 ~D~~~-~~~~~~fD~I~~~~vl~~l~~-------------------------------~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 174 YDINS-ASIQEEYDFILSTVVLMFLNR-------------------------------ERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred echhc-ccccCCccEEEEcchhhhCCH-------------------------------HHHHHHHHHHHHhcCCCcEEEE
Confidence 34422 223789999999999999642 2445588888889999999776
Q ss_pred Eec
Q 043411 211 TFL 213 (242)
Q Consensus 211 ~~~ 213 (242)
...
T Consensus 222 v~~ 224 (287)
T PRK12335 222 VCA 224 (287)
T ss_pred EEe
Confidence 543
No 28
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.30 E-value=3.5e-06 Score=68.41 Aligned_cols=108 Identities=17% Similarity=0.231 Sum_probs=66.5
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
+..+|+|+|||+|..+..+.+.. . |..+++.-|+-. +.-...+. ........+ +..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~-------------~-~~~~i~gvD~s~-~~i~~a~~------~~~~~~~~n--i~~~ 59 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKEL-------------N-PGAKIIGVDISE-EMIEYAKK------RAKELGLDN--IEFI 59 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHS-------------T-TTSEEEEEESSH-HHHHHHHH------HHHHTTSTT--EEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhc-------------C-CCCEEEEEECcH-HHHHHhhc------ccccccccc--cceE
Confidence 46899999999999988776311 1 246788888762 11111111 111111122 2223
Q ss_pred ccccccccC--CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411 130 LGSFYQRLF--PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR 207 (242)
Q Consensus 130 pgSFy~~l~--p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~ 207 (242)
-+++.+ +- .++.+|++++..++||+.+.. .+|+.-.+-|++||.
T Consensus 60 ~~d~~~-l~~~~~~~~D~I~~~~~l~~~~~~~---------------------------------~~l~~~~~~lk~~G~ 105 (152)
T PF13847_consen 60 QGDIED-LPQELEEKFDIIISNGVLHHFPDPE---------------------------------KVLKNIIRLLKPGGI 105 (152)
T ss_dssp ESBTTC-GCGCSSTTEEEEEEESTGGGTSHHH---------------------------------HHHHHHHHHEEEEEE
T ss_pred Eeehhc-cccccCCCeeEEEEcCchhhccCHH---------------------------------HHHHHHHHHcCCCcE
Confidence 346644 32 128999999999998855432 266677777899999
Q ss_pred EEEEecc
Q 043411 208 MFLTFLG 214 (242)
Q Consensus 208 lvl~~~g 214 (242)
++++.+.
T Consensus 106 ~i~~~~~ 112 (152)
T PF13847_consen 106 LIISDPN 112 (152)
T ss_dssp EEEEEEE
T ss_pred EEEEECC
Confidence 9998887
No 29
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.29 E-value=6.4e-06 Score=74.94 Aligned_cols=131 Identities=15% Similarity=0.169 Sum_probs=79.9
Q ss_pred HHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhH
Q 043411 34 PFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFY 113 (242)
Q Consensus 34 ~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~ 113 (242)
.+|++..+++... .+...+|+|+|||+|..|..+++...+ ..+++--|+.. ++-...+
T Consensus 48 ~il~~~~~~ia~~-~~~~~~iLELGcGtG~~t~~Ll~~l~~--------------~~~~~~iDiS~-~mL~~a~------ 105 (301)
T TIGR03438 48 AILERHADEIAAA-TGAGCELVELGSGSSRKTRLLLDALRQ--------------PARYVPIDISA-DALKESA------ 105 (301)
T ss_pred HHHHHHHHHHHHh-hCCCCeEEecCCCcchhHHHHHHhhcc--------------CCeEEEEECCH-HHHHHHH------
Confidence 4444444444321 133478999999999999988854411 26677778873 2222111
Q ss_pred HhhhhcCCCCceeecccccccccc-CCCC----ceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHH
Q 043411 114 ERIKKDKFGPCFIAGMLGSFYQRL-FPSR----GINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQ 188 (242)
Q Consensus 114 ~~l~~~~~~~~f~~~vpgSFy~~l-~p~~----svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~ 188 (242)
..+.. ..+.+-+.++-|+|.+.+ +|.. ...++++.+++++++.
T Consensus 106 ~~l~~-~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~------------------------------- 153 (301)
T TIGR03438 106 AALAA-DYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTP------------------------------- 153 (301)
T ss_pred HHHHh-hCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCH-------------------------------
Confidence 11111 112344556777887533 3333 4567777788888652
Q ss_pred HHHHHHHHHHHhhhccCceEEEEecccCCC
Q 043411 189 RDFSAFLSLRSEEIVSGGRMFLTFLGRSIA 218 (242)
Q Consensus 189 ~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~ 218 (242)
.|..+||+.-++-|+|||+|++++-...+.
T Consensus 154 ~e~~~~L~~i~~~L~pgG~~lig~d~~~~~ 183 (301)
T TIGR03438 154 EEAVAFLRRIRQLLGPGGGLLIGVDLVKDP 183 (301)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeccCCCCH
Confidence 234458888888999999999987766554
No 30
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.29 E-value=7.4e-07 Score=78.53 Aligned_cols=113 Identities=15% Similarity=0.219 Sum_probs=62.0
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
+..+|+|+|||+|..|+.+.+.+ .+..+|+--|+. .-.-... +..+......++ .-+
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~--------------~~~~~v~~vD~s-----~~ML~~a--~~k~~~~~~~~i--~~v 103 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRV--------------GPNGKVVGVDIS-----PGMLEVA--RKKLKREGLQNI--EFV 103 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGS--------------S---EEEEEES------HHHHHHH--HHHHHHTT--SE--EEE
T ss_pred CCCEEEEeCCChHHHHHHHHHHC--------------CCccEEEEecCC-----HHHHHHH--HHHHHhhCCCCe--eEE
Confidence 46799999999999888775222 134566666665 2111111 122221111222 234
Q ss_pred ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411 130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
-++..+--||++|+|.+.+++.+|-+.+.+. .|+.-.+=|||||+++
T Consensus 104 ~~da~~lp~~d~sfD~v~~~fglrn~~d~~~---------------------------------~l~E~~RVLkPGG~l~ 150 (233)
T PF01209_consen 104 QGDAEDLPFPDNSFDAVTCSFGLRNFPDRER---------------------------------ALREMYRVLKPGGRLV 150 (233)
T ss_dssp E-BTTB--S-TT-EEEEEEES-GGG-SSHHH---------------------------------HHHHHHHHEEEEEEEE
T ss_pred EcCHHHhcCCCCceeEEEHHhhHHhhCCHHH---------------------------------HHHHHHHHcCCCeEEE
Confidence 5577666689999999999999998654222 4444555569999999
Q ss_pred EEecccCCC
Q 043411 210 LTFLGRSIA 218 (242)
Q Consensus 210 l~~~g~~~~ 218 (242)
+.-++++..
T Consensus 151 ile~~~p~~ 159 (233)
T PF01209_consen 151 ILEFSKPRN 159 (233)
T ss_dssp EEEEEB-SS
T ss_pred EeeccCCCC
Confidence 999988764
No 31
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.28 E-value=9.1e-06 Score=72.75 Aligned_cols=46 Identities=20% Similarity=0.357 Sum_probs=34.1
Q ss_pred cccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEE
Q 043411 135 QRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLT 211 (242)
Q Consensus 135 ~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~ 211 (242)
+..+|.+++|+|+|.+++||++. | +..++|+.-++-|+|||+|+++
T Consensus 196 ~~~~~~~~fD~I~crnvl~yf~~-~------------------------------~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 196 AESPPLGDFDLIFCRNVLIYFDE-P------------------------------TQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred CCCCccCCCCEEEechhHHhCCH-H------------------------------HHHHHHHHHHHHhCCCeEEEEE
Confidence 33346889999999999999754 1 1223666667778999999984
No 32
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.27 E-value=3.9e-06 Score=71.23 Aligned_cols=108 Identities=10% Similarity=0.116 Sum_probs=67.8
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..+..+.... + ...+++.-|+.. ++-...+. ... ...++- .+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~-------------~-~~~~~~~iD~~~-~~~~~~~~------~~~--~~~~i~--~~ 93 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSA-------------P-DRGKVTGVDFSS-EMLEVAKK------KSE--LPLNIE--FI 93 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhc-------------C-CCceEEEEECCH-HHHHHHHH------Hhc--cCCCce--EE
Confidence 46899999999999887665222 1 125677777641 11111111 000 001111 23
Q ss_pred ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411 130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
.+++.+..++++++|+++++..+|+..+. ..+|+...+.|+|||+++
T Consensus 94 ~~d~~~~~~~~~~~D~i~~~~~~~~~~~~---------------------------------~~~l~~~~~~L~~gG~l~ 140 (223)
T TIGR01934 94 QADAEALPFEDNSFDAVTIAFGLRNVTDI---------------------------------QKALREMYRVLKPGGRLV 140 (223)
T ss_pred ecchhcCCCCCCcEEEEEEeeeeCCcccH---------------------------------HHHHHHHHHHcCCCcEEE
Confidence 35666666788899999999999885432 227888888899999999
Q ss_pred EEeccc
Q 043411 210 LTFLGR 215 (242)
Q Consensus 210 l~~~g~ 215 (242)
+.....
T Consensus 141 ~~~~~~ 146 (223)
T TIGR01934 141 ILEFSK 146 (223)
T ss_pred EEEecC
Confidence 876643
No 33
>PRK06922 hypothetical protein; Provisional
Probab=98.26 E-value=2.5e-06 Score=84.94 Aligned_cols=116 Identities=15% Similarity=0.183 Sum_probs=70.3
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||+|..+..+.+.. |..+++--|+.. +.-...+ ....... .++ ..+-
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~---------------P~~kVtGIDIS~-~MLe~Ar------arl~~~g-~~i--e~I~ 473 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEET---------------EDKRIYGIDISE-NVIDTLK------KKKQNEG-RSW--NVIK 473 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhC---------------CCCEEEEEECCH-HHHHHHH------HHhhhcC-CCe--EEEE
Confidence 5799999999998766554211 357888888873 1111111 1110000 111 1122
Q ss_pred ccccc--ccCCCCceeEEEcccceeec-ccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411 131 GSFYQ--RLFPSRGINFIHSSYSVHWL-SKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR 207 (242)
Q Consensus 131 gSFy~--~l~p~~svdl~~Ss~alhWL-s~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~ 207 (242)
++... ..|+++++|++++++++||+ +.+|.. +.- |. .+|...+|+.-.+-|+|||+
T Consensus 474 gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~-----g~~-------------f~---~edl~kiLreI~RVLKPGGr 532 (677)
T PRK06922 474 GDAINLSSSFEKESVDTIVYSSILHELFSYIEYE-----GKK-------------FN---HEVIKKGLQSAYEVLKPGGR 532 (677)
T ss_pred cchHhCccccCCCCEEEEEEchHHHhhhhhcccc-----ccc-------------cc---HHHHHHHHHHHHHHcCCCcE
Confidence 34422 23788999999999999964 556541 100 00 24667788888899999999
Q ss_pred EEEEe
Q 043411 208 MFLTF 212 (242)
Q Consensus 208 lvl~~ 212 (242)
+++.-
T Consensus 533 LII~D 537 (677)
T PRK06922 533 IIIRD 537 (677)
T ss_pred EEEEe
Confidence 99974
No 34
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.25 E-value=1e-05 Score=72.20 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=42.4
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..+..+...+ .. . ...+++-.|+.. ..-........+-.|..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~----~~-------~-~~~~v~giD~s~-----------~~l~~A~~~~~~~~~~~-- 139 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADAL----PE-------I-TTMQLFGLDISK-----------VAIKYAAKRYPQVTFCV-- 139 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhc----cc-------c-cCCeEEEECCCH-----------HHHHHHHHhCCCCeEEE--
Confidence 45789999999999888776332 10 0 114677778752 11110110001112322
Q ss_pred ccccccccCCCCceeEEEccc
Q 043411 130 LGSFYQRLFPSRGINFIHSSY 150 (242)
Q Consensus 130 pgSFy~~l~p~~svdl~~Ss~ 150 (242)
++..+--|+++++|+++|..
T Consensus 140 -~d~~~lp~~~~sfD~I~~~~ 159 (272)
T PRK11088 140 -ASSHRLPFADQSLDAIIRIY 159 (272)
T ss_pred -eecccCCCcCCceeEEEEec
Confidence 35544457889999999854
No 35
>PRK08317 hypothetical protein; Provisional
Probab=98.25 E-value=6.4e-06 Score=70.21 Aligned_cols=108 Identities=18% Similarity=0.158 Sum_probs=66.5
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..+..+.... .|..+++--|+..+-... -+.. .......-.| +
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~--------------~~~~~v~~~d~~~~~~~~-a~~~------~~~~~~~~~~---~ 74 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRV--------------GPEGRVVGIDRSEAMLAL-AKER------AAGLGPNVEF---V 74 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhc--------------CCCcEEEEEeCCHHHHHH-HHHH------hhCCCCceEE---E
Confidence 45799999999998877665322 023567777765211111 0000 0000001122 2
Q ss_pred ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411 130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
.+++....++++++|++++..++||+.+.+. +|+...+-|+|||+++
T Consensus 75 ~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~---------------------------------~l~~~~~~L~~gG~l~ 121 (241)
T PRK08317 75 RGDADGLPFPDGSFDAVRSDRVLQHLEDPAR---------------------------------ALAEIARVLRPGGRVV 121 (241)
T ss_pred ecccccCCCCCCCceEEEEechhhccCCHHH---------------------------------HHHHHHHHhcCCcEEE
Confidence 3355444567889999999999998655222 6777778889999999
Q ss_pred EEecc
Q 043411 210 LTFLG 214 (242)
Q Consensus 210 l~~~g 214 (242)
+....
T Consensus 122 ~~~~~ 126 (241)
T PRK08317 122 VLDTD 126 (241)
T ss_pred EEecC
Confidence 98753
No 36
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.19 E-value=2.4e-06 Score=73.37 Aligned_cols=120 Identities=18% Similarity=0.217 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcC
Q 043411 30 SKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESL 109 (242)
Q Consensus 30 ~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l 109 (242)
....+.+.+++. .-++.+++|+|||.|+||+-+.+ + -+.|..-|....-...+-+ +
T Consensus 16 ~~~hs~v~~a~~------~~~~g~~LDlgcG~GRNalyLA~--------~---------G~~VtAvD~s~~al~~l~~-~ 71 (192)
T PF03848_consen 16 TPTHSEVLEAVP------LLKPGKALDLGCGEGRNALYLAS--------Q---------GFDVTAVDISPVALEKLQR-L 71 (192)
T ss_dssp ----HHHHHHCT------TS-SSEEEEES-TTSHHHHHHHH--------T---------T-EEEEEESSHHHHHHHHH-H
T ss_pred CCCcHHHHHHHh------hcCCCcEEEcCCCCcHHHHHHHH--------C---------CCeEEEEECCHHHHHHHHH-H
Confidence 344555555543 12468999999999999998862 2 1556655655222211111 1
Q ss_pred chhHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHH
Q 043411 110 PDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQR 189 (242)
Q Consensus 110 ~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~ 189 (242)
.. ...+ + +...-.++-+. -+++..|+|+|...+|.|.. +
T Consensus 72 a~-~~~l------~--i~~~~~Dl~~~-~~~~~yD~I~st~v~~fL~~--~----------------------------- 110 (192)
T PF03848_consen 72 AE-EEGL------D--IRTRVADLNDF-DFPEEYDFIVSTVVFMFLQR--E----------------------------- 110 (192)
T ss_dssp HH-HTT-------T--EEEEE-BGCCB-S-TTTEEEEEEESSGGGS-G--G-----------------------------
T ss_pred Hh-hcCc------e--eEEEEecchhc-cccCCcCEEEEEEEeccCCH--H-----------------------------
Confidence 10 0011 1 22233344233 34578999999999998763 1
Q ss_pred HHHHHHHHHHhhhccCceEEEEecc
Q 043411 190 DFSAFLSLRSEEIVSGGRMFLTFLG 214 (242)
Q Consensus 190 D~~~FL~~Ra~EL~pGG~lvl~~~g 214 (242)
.+..+++.-.+.++|||++++..+-
T Consensus 111 ~~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 111 LRPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp GHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred HHHHHHHHHHhhcCCcEEEEEEEec
Confidence 1223677778889999998885553
No 37
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.17 E-value=4.5e-06 Score=71.76 Aligned_cols=106 Identities=16% Similarity=0.228 Sum_probs=62.2
Q ss_pred EEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccc
Q 043411 53 NVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGS 132 (242)
Q Consensus 53 ~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgS 132 (242)
+|+|+|||+|..+..+.+.. +..+++--|+.. +.-...+. ......... -+..+.++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~---------------~~~~v~gid~s~-~~~~~a~~------~~~~~gl~~-~i~~~~~d 58 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH---------------PHLQLHGYTISP-EQAEVGRE------RIRALGLQG-RIRIFYRD 58 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC---------------CCCEEEEEECCH-HHHHHHHH------HHHhcCCCc-ceEEEecc
Confidence 69999999999877654221 235566666631 11111111 110000000 11123335
Q ss_pred cccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEe
Q 043411 133 FYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTF 212 (242)
Q Consensus 133 Fy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~ 212 (242)
+.+..+ ++++|+++|..++|++.+ +..+|+.-++-|+|||++++..
T Consensus 59 ~~~~~~-~~~fD~I~~~~~l~~~~~---------------------------------~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 59 SAKDPF-PDTYDLVFGFEVIHHIKD---------------------------------KMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred cccCCC-CCCCCEeehHHHHHhCCC---------------------------------HHHHHHHHHHHcCCCCEEEEEE
Confidence 433333 468999999999998543 2237888888899999999988
Q ss_pred ccc
Q 043411 213 LGR 215 (242)
Q Consensus 213 ~g~ 215 (242)
+..
T Consensus 105 ~~~ 107 (224)
T smart00828 105 FIA 107 (224)
T ss_pred ccc
Confidence 754
No 38
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.16 E-value=1.7e-05 Score=71.86 Aligned_cols=112 Identities=13% Similarity=0.203 Sum_probs=70.4
Q ss_pred CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411 49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG 128 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~ 128 (242)
....+|+|+|||+|..++.+.+.. |..+++.-|+| ..-...+. ....... .--+..
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~---------------p~~~~~~~D~~--~~~~~a~~------~~~~~gl-~~rv~~ 203 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHF---------------PELDSTILNLP--GAIDLVNE------NAAEKGV-ADRMRG 203 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHC---------------CCCEEEEEecH--HHHHHHHH------HHHhCCc-cceEEE
Confidence 345799999999998877665221 45777777887 33222221 1111000 112445
Q ss_pred cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411 129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM 208 (242)
Q Consensus 129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l 208 (242)
++++|++.-+|+ .|+++.+..+|-..+ .+-..+|+.-.+-|+|||++
T Consensus 204 ~~~d~~~~~~~~--~D~v~~~~~lh~~~~-------------------------------~~~~~il~~~~~~L~pgG~l 250 (306)
T TIGR02716 204 IAVDIYKESYPE--ADAVLFCRILYSANE-------------------------------QLSTIMCKKAFDAMRSGGRL 250 (306)
T ss_pred EecCccCCCCCC--CCEEEeEhhhhcCCh-------------------------------HHHHHHHHHHHHhcCCCCEE
Confidence 778998755665 499988888873211 12233788888899999999
Q ss_pred EEEecccCC
Q 043411 209 FLTFLGRSI 217 (242)
Q Consensus 209 vl~~~g~~~ 217 (242)
++.-+-.++
T Consensus 251 ~i~d~~~~~ 259 (306)
T TIGR02716 251 LILDMVIDD 259 (306)
T ss_pred EEEEeccCC
Confidence 999765443
No 39
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.15 E-value=1.1e-05 Score=71.66 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=64.9
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
..-+|+|+|||+|..++.+...+ + +..+|+--|.-. ..-...+. ........++ ..+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~-----------g---~~~~v~gvD~s~-~~l~~A~~------~~~~~g~~~v--~~~ 133 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRV-----------G---PTGKVIGVDMTP-EMLAKARA------NARKAGYTNV--EFR 133 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHh-----------C---CCCEEEEECCCH-HHHHHHHH------HHHHcCCCCE--EEE
Confidence 45799999999998776544221 1 235677777642 11111111 1111111121 223
Q ss_pred ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411 130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
.+++..--+|++++|+++|..++||..+.+. .|+.-.+-|+|||+++
T Consensus 134 ~~d~~~l~~~~~~fD~Vi~~~v~~~~~d~~~---------------------------------~l~~~~r~LkpGG~l~ 180 (272)
T PRK11873 134 LGEIEALPVADNSVDVIISNCVINLSPDKER---------------------------------VFKEAFRVLKPGGRFA 180 (272)
T ss_pred EcchhhCCCCCCceeEEEEcCcccCCCCHHH---------------------------------HHHHHHHHcCCCcEEE
Confidence 4566444467889999999999998533221 4555566679999999
Q ss_pred EEeccc
Q 043411 210 LTFLGR 215 (242)
Q Consensus 210 l~~~g~ 215 (242)
++.+..
T Consensus 181 i~~~~~ 186 (272)
T PRK11873 181 ISDVVL 186 (272)
T ss_pred EEEeec
Confidence 986643
No 40
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.14 E-value=3.3e-05 Score=66.56 Aligned_cols=105 Identities=11% Similarity=0.211 Sum_probs=59.2
Q ss_pred CcchHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEE
Q 043411 14 GETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVF 93 (242)
Q Consensus 14 g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~ 93 (242)
|.. |.+....+.. ......++.+.+..+ +..-+|+|+|||+|.++..+.+.+ +..+++
T Consensus 14 g~~-~~~rn~~~~~-~~~~~~~~~~~l~~~-----~~~~~VLDiGCG~G~~~~~L~~~~---------------~~~~v~ 71 (204)
T TIGR03587 14 GKE-YIDRNSRQSL-VAAKLAMFARALNRL-----PKIASILELGANIGMNLAALKRLL---------------PFKHIY 71 (204)
T ss_pred cch-hhhccccHHH-HHHHHHHHHHHHHhc-----CCCCcEEEEecCCCHHHHHHHHhC---------------CCCeEE
Confidence 444 4444433322 233455566555533 345789999999998887665221 235566
Q ss_pred ecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeec
Q 043411 94 LNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWL 155 (242)
Q Consensus 94 ~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWL 155 (242)
--|+-. +.-...+. .+ .+..+ +.++..+ .++++++|++++..++|++
T Consensus 72 giDiS~-~~l~~A~~------~~----~~~~~---~~~d~~~-~~~~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 72 GVEINE-YAVEKAKA------YL----PNINI---IQGSLFD-PFKDNFFDLVLTKGVLIHI 118 (204)
T ss_pred EEECCH-HHHHHHHh------hC----CCCcE---EEeeccC-CCCCCCEEEEEECChhhhC
Confidence 666652 11111111 00 01112 3456655 6789999999999999875
No 41
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.14 E-value=2.9e-06 Score=74.90 Aligned_cols=106 Identities=18% Similarity=0.279 Sum_probs=69.1
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
....++|+|||-|..+..+...=| -+++.-|.. ...-++.++...+.+-+.-.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~v----------------ekli~~DtS-----------~~M~~s~~~~qdp~i~~~~~ 124 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGV----------------EKLIMMDTS-----------YDMIKSCRDAQDPSIETSYF 124 (325)
T ss_pred hCcceeecccchhhhhHHHHhcch----------------hheeeeecc-----------hHHHHHhhccCCCceEEEEE
Confidence 467899999999988776653322 344555554 22222222111222222211
Q ss_pred --ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411 130 --LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR 207 (242)
Q Consensus 130 --pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~ 207 (242)
--.|.. |-.+|+|+++|+.++||..++|. .+..+..-|||.|.
T Consensus 125 v~DEE~Ld--f~ens~DLiisSlslHW~NdLPg---------------------------------~m~~ck~~lKPDg~ 169 (325)
T KOG2940|consen 125 VGDEEFLD--FKENSVDLIISSLSLHWTNDLPG---------------------------------SMIQCKLALKPDGL 169 (325)
T ss_pred ecchhccc--ccccchhhhhhhhhhhhhccCch---------------------------------HHHHHHHhcCCCcc
Confidence 112323 78899999999999999999998 45567778899999
Q ss_pred EEEEecccCC
Q 043411 208 MFLTFLGRSI 217 (242)
Q Consensus 208 lvl~~~g~~~ 217 (242)
++-+++|-+.
T Consensus 170 FiasmlggdT 179 (325)
T KOG2940|consen 170 FIASMLGGDT 179 (325)
T ss_pred chhHHhcccc
Confidence 9999988654
No 42
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.14 E-value=3.1e-05 Score=66.98 Aligned_cols=111 Identities=14% Similarity=0.202 Sum_probs=66.9
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..|..+++.. + +.-.|+--|+- +.+ .++ ++ ..+
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~-----------~---~~~~V~aVDi~--~~~----~~~------------~v--~~i 96 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQI-----------G---DKGRVIACDIL--PMD----PIV------------GV--DFL 96 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHc-----------C---CCceEEEEecc--ccc----CCC------------Cc--EEE
Confidence 34689999999999887666322 1 23566767764 211 111 11 123
Q ss_pred ccccccc--------cCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 043411 130 LGSFYQR--------LFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEE 201 (242)
Q Consensus 130 pgSFy~~--------l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~E 201 (242)
-+++.+. -++++++|+++|..+.||... |. ..... + .......|+.-.+-
T Consensus 97 ~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~-~~-------------------~d~~~-~-~~~~~~~L~~~~~~ 154 (209)
T PRK11188 97 QGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGT-PA-------------------VDIPR-A-MYLVELALDMCRDV 154 (209)
T ss_pred ecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCC-hH-------------------HHHHH-H-HHHHHHHHHHHHHH
Confidence 4466542 257889999999999999332 11 00000 0 11134567777777
Q ss_pred hccCceEEEEecccC
Q 043411 202 IVSGGRMFLTFLGRS 216 (242)
Q Consensus 202 L~pGG~lvl~~~g~~ 216 (242)
|+|||.+++..+..+
T Consensus 155 LkpGG~~vi~~~~~~ 169 (209)
T PRK11188 155 LAPGGSFVVKVFQGE 169 (209)
T ss_pred cCCCCEEEEEEecCc
Confidence 899999999877653
No 43
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.13 E-value=3.6e-06 Score=77.41 Aligned_cols=107 Identities=15% Similarity=0.086 Sum_probs=63.6
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
.-+|+|+|||+|..+..++. . + + -.|+--|... .|-..|+.... ... ....+. ..+
T Consensus 122 g~~VLDvGCG~G~~~~~~~~--------~----g---~-~~v~GiDpS~-~ml~q~~~~~~---~~~--~~~~v~--~~~ 177 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLG--------H----G---A-KSLVGIDPTV-LFLCQFEAVRK---LLD--NDKRAI--LEP 177 (314)
T ss_pred CCEEEEeccCCcHHHHHHHH--------c----C---C-CEEEEEcCCH-HHHHHHHHHHH---Hhc--cCCCeE--EEE
Confidence 47999999999998765541 1 1 1 2344444321 23222222211 010 011221 234
Q ss_pred cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411 131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
+++ +.+-+..++|+|+|..+++|+.+.. .+|+.-++-|+|||.|++
T Consensus 178 ~~i-e~lp~~~~FD~V~s~gvL~H~~dp~---------------------------------~~L~el~r~LkpGG~Lvl 223 (314)
T TIGR00452 178 LGI-EQLHELYAFDTVFSMGVLYHRKSPL---------------------------------EHLKQLKHQLVIKGELVL 223 (314)
T ss_pred CCH-HHCCCCCCcCEEEEcchhhccCCHH---------------------------------HHHHHHHHhcCCCCEEEE
Confidence 454 4555567899999999999953321 178888888999999999
Q ss_pred Eeccc
Q 043411 211 TFLGR 215 (242)
Q Consensus 211 ~~~g~ 215 (242)
.++..
T Consensus 224 etl~i 228 (314)
T TIGR00452 224 ETLVI 228 (314)
T ss_pred EEEEe
Confidence 87754
No 44
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.09 E-value=2.5e-06 Score=64.60 Aligned_cols=100 Identities=22% Similarity=0.329 Sum_probs=57.1
Q ss_pred EeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecccccc
Q 043411 54 VADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSF 133 (242)
Q Consensus 54 IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSF 133 (242)
|+|+|||+|..+..+.... + ..|+.+++.-|+-. +.-...+ +.......+-.| +.+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~-----------~~~~~~~~gvD~s~-~~l~~~~------~~~~~~~~~~~~---~~~D~ 58 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-D-----------AGPSSRVIGVDISP-EMLELAK------KRFSEDGPKVRF---VQADA 58 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----------------SEEEEEES-H-HHHHHHH------HHSHHTTTTSEE---EESCT
T ss_pred CEEeecCCcHHHHHHHHHh-h-----------hcccceEEEEECCH-HHHHHHH------HhchhcCCceEE---EECCH
Confidence 7999999999999887443 1 11346777777652 1111111 111111112233 33455
Q ss_pred ccccCCCCceeEEEcccc-eeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411 134 YQRLFPSRGINFIHSSYS-VHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 134 y~~l~p~~svdl~~Ss~a-lhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG 206 (242)
-+--++.+++|+++++.. +|++++ +++..+|+.-++-|+|||
T Consensus 59 ~~l~~~~~~~D~v~~~~~~~~~~~~-------------------------------~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 59 RDLPFSDGKFDLVVCSGLSLHHLSP-------------------------------EELEALLRRIARLLRPGG 101 (101)
T ss_dssp TCHHHHSSSEEEEEE-TTGGGGSSH-------------------------------HHHHHHHHHHHHTEEEEE
T ss_pred hHCcccCCCeeEEEEcCCccCCCCH-------------------------------HHHHHHHHHHHHHhCCCC
Confidence 333346779999999655 887554 456669999999999998
No 45
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.07 E-value=8.6e-06 Score=75.67 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=65.1
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||+|..++.+.+.. +..+++.-|+.. ++-...+.... ..++ ..+.
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~---------------~~~~VtgVD~S~-~mL~~A~~k~~---------~~~i--~~i~ 166 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHV---------------DAKNVTILDQSP-HQLAKAKQKEP---------LKEC--KIIE 166 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHC---------------CCCEEEEEECCH-HHHHHHHHhhh---------ccCC--eEEe
Confidence 5799999999999887665221 125677777742 22222221110 0111 1255
Q ss_pred cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411 131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
++..+.-++++++|+++++.++|++.+.. ..|+.-.+-|+|||++++
T Consensus 167 gD~e~lp~~~~sFDvVIs~~~L~~~~d~~---------------------------------~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 167 GDAEDLPFPTDYADRYVSAGSIEYWPDPQ---------------------------------RGIKEAYRVLKIGGKACL 213 (340)
T ss_pred ccHHhCCCCCCceeEEEEcChhhhCCCHH---------------------------------HHHHHHHHhcCCCcEEEE
Confidence 57655557889999999999999744311 156666777799999988
Q ss_pred Eec
Q 043411 211 TFL 213 (242)
Q Consensus 211 ~~~ 213 (242)
...
T Consensus 214 i~~ 216 (340)
T PLN02490 214 IGP 216 (340)
T ss_pred EEe
Confidence 643
No 46
>PRK06202 hypothetical protein; Provisional
Probab=98.06 E-value=0.00015 Score=62.98 Aligned_cols=86 Identities=14% Similarity=0.173 Sum_probs=49.9
Q ss_pred CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411 49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG 128 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~ 128 (242)
.+..+|+|+|||+|.++..+.... ++. .+..+++-.|+.. +.-...+.... ..+--+..+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~----~~~-------g~~~~v~gvD~s~-~~l~~a~~~~~--------~~~~~~~~~ 118 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWA----RRD-------GLRLEVTAIDPDP-RAVAFARANPR--------RPGVTFRQA 118 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHH----HhC-------CCCcEEEEEcCCH-HHHHHHHhccc--------cCCCeEEEE
Confidence 356899999999999888665332 111 1346888888863 22222221110 001112222
Q ss_pred cccccccccCCCCceeEEEcccceeeccc
Q 043411 129 MLGSFYQRLFPSRGINFIHSSYSVHWLSK 157 (242)
Q Consensus 129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~ 157 (242)
....+ -++++++|+++|+.++||+.+
T Consensus 119 ~~~~l---~~~~~~fD~V~~~~~lhh~~d 144 (232)
T PRK06202 119 VSDEL---VAEGERFDVVTSNHFLHHLDD 144 (232)
T ss_pred ecccc---cccCCCccEEEECCeeecCCh
Confidence 11111 136789999999999999865
No 47
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.05 E-value=1.4e-05 Score=76.66 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=63.6
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCC-ceeecc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGP-CFIAGM 129 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~-~f~~~v 129 (242)
..+|+|+|||+|.+|..+.+.. .+|+-.|+. .-+-... . ... ....+ .|+.
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~-----------------~~v~giD~s-----~~~l~~a--~-~~~-~~~~~i~~~~-- 89 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKA-----------------GQVIALDFI-----ESVIKKN--E-SIN-GHYKNVKFMC-- 89 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhC-----------------CEEEEEeCC-----HHHHHHH--H-HHh-ccCCceEEEE--
Confidence 4589999999999998776221 244555543 2211110 0 010 01112 2322
Q ss_pred cccccc--ccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411 130 LGSFYQ--RLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR 207 (242)
Q Consensus 130 pgSFy~--~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~ 207 (242)
+++.. .-+|++++|+|++..++||+++ .++..+|+...+-|+|||+
T Consensus 90 -~d~~~~~~~~~~~~fD~I~~~~~l~~l~~-------------------------------~~~~~~l~~~~r~Lk~gG~ 137 (475)
T PLN02336 90 -ADVTSPDLNISDGSVDLIFSNWLLMYLSD-------------------------------KEVENLAERMVKWLKVGGY 137 (475)
T ss_pred -ecccccccCCCCCCEEEEehhhhHHhCCH-------------------------------HHHHHHHHHHHHhcCCCeE
Confidence 34432 2367899999999999999754 2334488888888999999
Q ss_pred EEEEec
Q 043411 208 MFLTFL 213 (242)
Q Consensus 208 lvl~~~ 213 (242)
|++.-.
T Consensus 138 l~~~d~ 143 (475)
T PLN02336 138 IFFRES 143 (475)
T ss_pred EEEEec
Confidence 998643
No 48
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.04 E-value=2e-05 Score=69.17 Aligned_cols=138 Identities=21% Similarity=0.322 Sum_probs=84.5
Q ss_pred chHHHhhHH---HHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEE
Q 043411 16 TSYAKNSNI---QRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQV 92 (242)
Q Consensus 16 ~sY~~nS~~---Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv 92 (242)
.-|.+||.+ |+...++++.+|.- ..+++--|+|+|||||-.+-.+- . +.-++
T Consensus 21 ~kYt~nsri~~IQ~em~eRaLELLal--------p~~~~~~iLDIGCGsGLSg~vL~----------------~-~Gh~w 75 (270)
T KOG1541|consen 21 PKYTQNSRIVLIQAEMAERALELLAL--------PGPKSGLILDIGCGSGLSGSVLS----------------D-SGHQW 75 (270)
T ss_pred hhccccceeeeehHHHHHHHHHHhhC--------CCCCCcEEEEeccCCCcchheec----------------c-CCceE
Confidence 358888875 66666666654431 12358999999999997654331 1 22555
Q ss_pred EecCCCCCchHHHhhcCchhHH-hhhhcCCCCceeecccccc-ccccCCCCceeEEEcccceeecccCCCcccCCCCceE
Q 043411 93 FLNDLPGNDFNSIFESLPDFYE-RIKKDKFGPCFIAGMLGSF-YQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIY 170 (242)
Q Consensus 93 ~~nDLp~NDFn~lf~~l~~~~~-~l~~~~~~~~f~~~vpgSF-y~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~ 170 (242)
+--|.. +.+-+ .+.. ...--++.+ ++ -+--|+++++|=++|-+|+|||=..-....
T Consensus 76 iGvDiS-----------psML~~a~~~-e~egdlil~---DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~------- 133 (270)
T KOG1541|consen 76 IGVDIS-----------PSMLEQAVER-ELEGDLILC---DMGEGLPFRPGTFDGVISISAVQWLCNADKSLH------- 133 (270)
T ss_pred EeecCC-----------HHHHHHHHHh-hhhcCeeee---ecCCCCCCCCCccceEEEeeeeeeecccCcccc-------
Confidence 555654 22111 1100 001111111 22 244579999999999999999766544221
Q ss_pred EcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEeccc
Q 043411 171 ITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGR 215 (242)
Q Consensus 171 ~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~ 215 (242)
.+ ++.+.+|+..-..-|++|++-|+.+.-.
T Consensus 134 ------~P---------~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 134 ------VP---------KKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred ------Ch---------HHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 11 3567779988889999999999988644
No 49
>PRK05785 hypothetical protein; Provisional
Probab=98.03 E-value=2.9e-05 Score=67.90 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=48.7
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||+|.++..+.+.. ..+|+--|+.. +.-.+-+ . + .-+ +-
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~----------------~~~v~gvD~S~-~Ml~~a~----------~-~--~~~---~~ 98 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF----------------KYYVVALDYAE-NMLKMNL----------V-A--DDK---VV 98 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc----------------CCEEEEECCCH-HHHHHHH----------h-c--cce---EE
Confidence 5799999999998887664221 13566666541 1111111 0 0 112 34
Q ss_pred cccccccCCCCceeEEEcccceeecccCCC
Q 043411 131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPE 160 (242)
Q Consensus 131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~ 160 (242)
+++..--||++|+|+++|++++||+.+.+.
T Consensus 99 ~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~ 128 (226)
T PRK05785 99 GSFEALPFRDKSFDVVMSSFALHASDNIEK 128 (226)
T ss_pred echhhCCCCCCCEEEEEecChhhccCCHHH
Confidence 566555678999999999999999766443
No 50
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.99 E-value=2.8e-05 Score=59.73 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.2
Q ss_pred HHHHHHHhhhccCceEEEEec
Q 043411 193 AFLSLRSEEIVSGGRMFLTFL 213 (242)
Q Consensus 193 ~FL~~Ra~EL~pGG~lvl~~~ 213 (242)
.+++.-.+.|+|||++++++.
T Consensus 103 ~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 103 EILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred HHHHHHHHHcCCCCEEEEEec
Confidence 588888899999999999864
No 51
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.95 E-value=2.6e-05 Score=72.50 Aligned_cols=107 Identities=14% Similarity=0.180 Sum_probs=65.1
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
.-+|+|+|||+|..++.+.+ + .|..+|+..|... .. +...+..+..+..... .++
T Consensus 197 ~g~VLDlGCG~G~ls~~la~--------~-------~p~~~v~~vDis~---~A----l~~A~~nl~~n~l~~~---~~~ 251 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLAR--------H-------SPKIRLTLSDVSA---AA----LESSRATLAANGLEGE---VFA 251 (342)
T ss_pred CCeEEEeccCcCHHHHHHHH--------h-------CCCCEEEEEECCH---HH----HHHHHHHHHHcCCCCE---EEE
Confidence 35899999999998776652 1 1457788888752 11 1111111111111111 234
Q ss_pred cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411 131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
++.+.. .++.+|+|+|.-.+||.-.. ...+..+|++.-++-|+|||.|++
T Consensus 252 ~D~~~~--~~~~fDlIvsNPPFH~g~~~----------------------------~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 252 SNVFSD--IKGRFDMIISNPPFHDGIQT----------------------------SLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred cccccc--cCCCccEEEECCCccCCccc----------------------------cHHHHHHHHHHHHHhcCcCCEEEE
Confidence 455543 36789999999999872110 013455688888899999999988
Q ss_pred Ee
Q 043411 211 TF 212 (242)
Q Consensus 211 ~~ 212 (242)
..
T Consensus 302 Va 303 (342)
T PRK09489 302 VA 303 (342)
T ss_pred EE
Confidence 64
No 52
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.94 E-value=9e-05 Score=61.72 Aligned_cols=110 Identities=19% Similarity=0.283 Sum_probs=64.8
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..++.+.. + .|...|+..|.-.+=.... +.....+...+ +..+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~--------~-------~~~~~v~~vDi~~~a~~~a-------~~n~~~n~~~~--v~~~ 86 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAK--------R-------GPDAKVTAVDINPDALELA-------KRNAERNGLEN--VEVV 86 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHH--------T-------STCEEEEEEESBHHHHHHH-------HHHHHHTTCTT--EEEE
T ss_pred cCCeEEEecCChHHHHHHHHH--------h-------CCCCEEEEEcCCHHHHHHH-------HHHHHhcCccc--cccc
Confidence 357899999999999887752 1 1456788888752111111 11111122233 4456
Q ss_pred ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411 130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
..+.++.+- ++++|+|+|. |+-.. ...+. ..-+..|++.-.+-|+|||.|+
T Consensus 87 ~~d~~~~~~-~~~fD~Iv~N---------PP~~~-----------~~~~~--------~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 87 QSDLFEALP-DGKFDLIVSN---------PPFHA-----------GGDDG--------LDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp ESSTTTTCC-TTCEEEEEE------------SBT-----------TSHCH--------HHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccccccc-ccceeEEEEc---------cchhc-----------ccccc--------hhhHHHHHHHHHHhccCCCEEE
Confidence 678877655 8999999992 33110 01101 1224457777788899999998
Q ss_pred EEe
Q 043411 210 LTF 212 (242)
Q Consensus 210 l~~ 212 (242)
+..
T Consensus 138 lv~ 140 (170)
T PF05175_consen 138 LVI 140 (170)
T ss_dssp EEE
T ss_pred EEe
Confidence 744
No 53
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.93 E-value=5.4e-05 Score=71.34 Aligned_cols=110 Identities=12% Similarity=0.127 Sum_probs=63.5
Q ss_pred cEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCC-ceeeccc
Q 043411 52 FNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGP-CFIAGML 130 (242)
Q Consensus 52 ~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~-~f~~~vp 130 (242)
.+|+|+|||+|..++.+. ++ .|..+|+.-|... ..+...+..+..+.... .-+..+.
T Consensus 230 ~~VLDLGCGtGvi~i~la--------~~-------~P~~~V~~vD~S~-------~Av~~A~~N~~~n~~~~~~~v~~~~ 287 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLL--------DK-------NPQAKVVFVDESP-------MAVASSRLNVETNMPEALDRCEFMI 287 (378)
T ss_pred CeEEEEeccccHHHHHHH--------Hh-------CCCCEEEEEECCH-------HHHHHHHHHHHHcCcccCceEEEEE
Confidence 599999999998877654 22 1568899988862 11111111111111110 0122234
Q ss_pred cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411 131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
++.+..+ ++.++|+|+|.--+|+...+.. . ...++++.-.+-|+|||.|++
T Consensus 288 ~D~l~~~-~~~~fDlIlsNPPfh~~~~~~~-----------------~-----------ia~~l~~~a~~~LkpGG~L~i 338 (378)
T PRK15001 288 NNALSGV-EPFRFNAVLCNPPFHQQHALTD-----------------N-----------VAWEMFHHARRCLKINGELYI 338 (378)
T ss_pred ccccccC-CCCCEEEEEECcCcccCccCCH-----------------H-----------HHHHHHHHHHHhcccCCEEEE
Confidence 4555543 5678999999877776322111 1 112356666677899999999
Q ss_pred Ee
Q 043411 211 TF 212 (242)
Q Consensus 211 ~~ 212 (242)
..
T Consensus 339 V~ 340 (378)
T PRK15001 339 VA 340 (378)
T ss_pred EE
Confidence 84
No 54
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.92 E-value=6.4e-05 Score=64.84 Aligned_cols=94 Identities=19% Similarity=0.329 Sum_probs=60.8
Q ss_pred CCccEEeeecCCCCcchHHHH------------HHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhh
Q 043411 49 PGCFNVADLGCSSGPNTLLVV------------SKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERI 116 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~------------~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l 116 (242)
+..-+++|+|||.|.+|..+. ..+|+.-++++. ..|.+++..-|+|
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~----~~~~V~~~~~dvp------------------ 99 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA----GLPHVEWIQADVP------------------ 99 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT----T-SSEEEEES-TT------------------
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC----CCCCeEEEECcCC------------------
Confidence 457899999999999999875 223333333321 1123444444444
Q ss_pred hhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHH
Q 043411 117 KKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLS 196 (242)
Q Consensus 117 ~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~ 196 (242)
. ..|++++|+|+-+-.+++|+.. .|+..++.
T Consensus 100 --------------~-----~~P~~~FDLIV~SEVlYYL~~~------------------------------~~L~~~l~ 130 (201)
T PF05401_consen 100 --------------E-----FWPEGRFDLIVLSEVLYYLDDA------------------------------EDLRAALD 130 (201)
T ss_dssp --------------T--------SS-EEEEEEES-GGGSSSH------------------------------HHHHHHHH
T ss_pred --------------C-----CCCCCCeeEEEEehHhHcCCCH------------------------------HHHHHHHH
Confidence 2 2588999999999999998651 45677888
Q ss_pred HHHhhhccCceEEEEec
Q 043411 197 LRSEEIVSGGRMFLTFL 213 (242)
Q Consensus 197 ~Ra~EL~pGG~lvl~~~ 213 (242)
.-.+-|+|||.||+...
T Consensus 131 ~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 131 RLVAALAPGGHLVFGHA 147 (201)
T ss_dssp HHHHTEEEEEEEEEEEE
T ss_pred HHHHHhCCCCEEEEEEe
Confidence 88899999999999876
No 55
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.89 E-value=2.7e-05 Score=66.19 Aligned_cols=115 Identities=16% Similarity=0.232 Sum_probs=66.7
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..+..+.... |..+++--|+-. +.-... ..........++. .+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~---------------p~~~v~gvD~~~-~~l~~a------~~~~~~~~l~ni~--~i 71 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN---------------PDKNFLGIEIHT-PIVLAA------NNKANKLGLKNLH--VL 71 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC---------------CCCCEEEEEeeH-HHHHHH------HHHHHHhCCCCEE--EE
Confidence 34699999999999888665221 345666666642 111111 1111111122332 24
Q ss_pred ccccc---cccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411 130 LGSFY---QRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 130 pgSFy---~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG 206 (242)
-++.. ..++|++++|.++..+..+|..+ .. .|..+. ...||+.-++-|+|||
T Consensus 72 ~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~-~h----~~~r~~--------------------~~~~l~~~~r~LkpgG 126 (194)
T TIGR00091 72 CGDANELLDKFFPDGSLSKVFLNFPDPWPKK-RH----NKRRIT--------------------QPHFLKEYANVLKKGG 126 (194)
T ss_pred ccCHHHHHHhhCCCCceeEEEEECCCcCCCC-Cc----cccccC--------------------CHHHHHHHHHHhCCCC
Confidence 44553 34467789999999988888432 11 011110 1237878888889999
Q ss_pred eEEEEec
Q 043411 207 RMFLTFL 213 (242)
Q Consensus 207 ~lvl~~~ 213 (242)
.+++.+-
T Consensus 127 ~l~~~td 133 (194)
T TIGR00091 127 VIHFKTD 133 (194)
T ss_pred EEEEEeC
Confidence 9998764
No 56
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.84 E-value=0.00015 Score=68.27 Aligned_cols=106 Identities=14% Similarity=0.205 Sum_probs=64.2
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..++.+.+.. ..+|+--|+...-. ... ++... ..-+...
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~----------------g~~V~giDlS~~~l-~~A------~~~~~-----~l~v~~~ 218 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHY----------------GVSVVGVTISAEQQ-KLA------QERCA-----GLPVEIR 218 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHC----------------CCEEEEEeCCHHHH-HHH------HHHhc-----cCeEEEE
Confidence 34699999999999887665211 14566666652100 000 01110 0011222
Q ss_pred ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411 130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
.+++ ..+ ++++|.++|...++|+.. +++..+++.-.+-|+|||+++
T Consensus 219 ~~D~-~~l--~~~fD~Ivs~~~~ehvg~-------------------------------~~~~~~l~~i~r~LkpGG~lv 264 (383)
T PRK11705 219 LQDY-RDL--NGQFDRIVSVGMFEHVGP-------------------------------KNYRTYFEVVRRCLKPDGLFL 264 (383)
T ss_pred ECch-hhc--CCCCCEEEEeCchhhCCh-------------------------------HHHHHHHHHHHHHcCCCcEEE
Confidence 3344 333 578999999888877421 234457777788889999999
Q ss_pred EEecccCC
Q 043411 210 LTFLGRSI 217 (242)
Q Consensus 210 l~~~g~~~ 217 (242)
+..++.+.
T Consensus 265 l~~i~~~~ 272 (383)
T PRK11705 265 LHTIGSNK 272 (383)
T ss_pred EEEccCCC
Confidence 99988764
No 57
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.84 E-value=0.0001 Score=61.60 Aligned_cols=125 Identities=13% Similarity=0.102 Sum_probs=67.0
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||+|..++.+.. . + + +++..|+-. ++-...+. .....+ +-+..+.
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~--------~----~---~--~v~~vD~s~-~~~~~a~~------~~~~~~---~~~~~~~ 72 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKG--------K----G---K--CILTTDINP-FAVKELRE------NAKLNN---VGLDVVM 72 (179)
T ss_pred CCeEEEeCCChhHHHHHHHh--------c----C---C--EEEEEECCH-HHHHHHHH------HHHHcC---CceEEEE
Confidence 46899999999998776652 1 1 2 677777751 11111111 111111 1122345
Q ss_pred cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411 131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
+++++. +.+++|+++|....|.....+.. ++...+-.... ..-...+..||+.-.+-|+|||++++
T Consensus 73 ~d~~~~--~~~~fD~Vi~n~p~~~~~~~~~~--~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~Lk~gG~~~~ 138 (179)
T TIGR00537 73 TDLFKG--VRGKFDVILFNPPYLPLEDDLRR--GDWLDVAIDGG----------KDGRKVIDRFLDELPEILKEGGRVQL 138 (179)
T ss_pred cccccc--cCCcccEEEECCCCCCCcchhcc--cchhhhhhhcC----------CchHHHHHHHHHhHHHhhCCCCEEEE
Confidence 566553 34589999998777655432221 00000000000 00112245688888888999999999
Q ss_pred EecccC
Q 043411 211 TFLGRS 216 (242)
Q Consensus 211 ~~~g~~ 216 (242)
...+..
T Consensus 139 ~~~~~~ 144 (179)
T TIGR00537 139 IQSSLN 144 (179)
T ss_pred EEeccC
Confidence 876544
No 58
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.78 E-value=8.6e-05 Score=62.85 Aligned_cols=75 Identities=13% Similarity=0.121 Sum_probs=41.5
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||+|..++.+.. . . +..+|+.-|...+ .-...+. ........+ +..+.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~-~-------------~-~~~~V~~iD~s~~-~~~~a~~------~~~~~~~~~--i~~i~ 98 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAI-A-------------R-PELKLTLLESNHK-KVAFLRE------VKAELGLNN--VEIVN 98 (181)
T ss_pred CCeEEEecCCCCccHHHHHH-H-------------C-CCCeEEEEeCcHH-HHHHHHH------HHHHhCCCC--eEEEe
Confidence 57999999999999887641 1 0 2356777776532 1111111 111111123 22345
Q ss_pred cccccccCCCCceeEEEccc
Q 043411 131 GSFYQRLFPSRGINFIHSSY 150 (242)
Q Consensus 131 gSFy~~l~p~~svdl~~Ss~ 150 (242)
++.. .+.+.+++|+++|..
T Consensus 99 ~d~~-~~~~~~~fD~I~s~~ 117 (181)
T TIGR00138 99 GRAE-DFQHEEQFDVITSRA 117 (181)
T ss_pred cchh-hccccCCccEEEehh
Confidence 5653 345678999999843
No 59
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.78 E-value=0.0002 Score=62.54 Aligned_cols=105 Identities=22% Similarity=0.364 Sum_probs=73.9
Q ss_pred CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411 49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG 128 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~ 128 (242)
+..-+|+|+|+|+|..+..+++ + .|..+++.=|||. . ..... . .-.+..
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~--------~-------~P~l~~~v~Dlp~--v---~~~~~---~--------~~rv~~ 147 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALAR--------A-------YPNLRATVFDLPE--V---IEQAK---E--------ADRVEF 147 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHH--------H-------STTSEEEEEE-HH--H---HCCHH---H--------TTTEEE
T ss_pred cCccEEEeccCcchHHHHHHHH--------H-------CCCCcceeeccHh--h---hhccc---c--------cccccc
Confidence 4567899999999988876652 2 1568899999992 1 11111 1 112335
Q ss_pred cccccccccCCCCceeEEEccccee-ecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC--
Q 043411 129 MLGSFYQRLFPSRGINFIHSSYSVH-WLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG-- 205 (242)
Q Consensus 129 vpgSFy~~l~p~~svdl~~Ss~alh-WLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG-- 205 (242)
+||+|+ .-+|. .|+++-.+.|| | + . ++-..+|+.-++-|+||
T Consensus 148 ~~gd~f-~~~P~--~D~~~l~~vLh~~-~---d----------------------------~~~~~iL~~~~~al~pg~~ 192 (241)
T PF00891_consen 148 VPGDFF-DPLPV--ADVYLLRHVLHDW-S---D----------------------------EDCVKILRNAAAALKPGKD 192 (241)
T ss_dssp EES-TT-TCCSS--ESEEEEESSGGGS-----H----------------------------HHHHHHHHHHHHHSEECTT
T ss_pred ccccHH-hhhcc--ccceeeehhhhhc-c---h----------------------------HHHHHHHHHHHHHhCCCCC
Confidence 899999 66777 99999999997 6 1 1 34555999999999999
Q ss_pred ceEEEEecccCCCC
Q 043411 206 GRMFLTFLGRSIAD 219 (242)
Q Consensus 206 G~lvl~~~g~~~~~ 219 (242)
|+++|.-.-.++..
T Consensus 193 g~llI~e~~~~~~~ 206 (241)
T PF00891_consen 193 GRLLIIEMVLPDDR 206 (241)
T ss_dssp EEEEEEEEEECSSS
T ss_pred CeEEEEeeccCCCC
Confidence 99999999877654
No 60
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.76 E-value=0.00011 Score=62.73 Aligned_cols=103 Identities=19% Similarity=0.216 Sum_probs=61.2
Q ss_pred CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411 49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG 128 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~ 128 (242)
+...+|+|+|||+|..++.+.... +..+|+.-|... +.-...+. ........+ +..
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~---------------~~~~V~giD~s~-~~l~~A~~------~~~~~~l~~--i~~ 99 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIAR---------------PELKVTLVDSLG-KKIAFLRE------VAAELGLKN--VTV 99 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHC---------------CCCeEEEEeCcH-HHHHHHHH------HHHHcCCCC--EEE
Confidence 346899999999999888776311 235677667642 11111111 111111122 333
Q ss_pred cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411 129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM 208 (242)
Q Consensus 129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l 208 (242)
+.++..+ +-+.+++|++++.. + .++..|++..++-|+|||++
T Consensus 100 ~~~d~~~-~~~~~~fDlV~~~~-~------------------------------------~~~~~~l~~~~~~LkpGG~l 141 (187)
T PRK00107 100 VHGRAEE-FGQEEKFDVVTSRA-V------------------------------------ASLSDLVELCLPLLKPGGRF 141 (187)
T ss_pred EeccHhh-CCCCCCccEEEEcc-c------------------------------------cCHHHHHHHHHHhcCCCeEE
Confidence 4455533 33467899999832 0 12334888888999999999
Q ss_pred EEEec
Q 043411 209 FLTFL 213 (242)
Q Consensus 209 vl~~~ 213 (242)
++...
T Consensus 142 v~~~~ 146 (187)
T PRK00107 142 LALKG 146 (187)
T ss_pred EEEeC
Confidence 98743
No 61
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.74 E-value=0.00024 Score=59.75 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=17.3
Q ss_pred CccEEeeecCCCCcchHHHH
Q 043411 50 GCFNVADLGCSSGPNTLLVV 69 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~ 69 (242)
...+|+|+|||+|..++.+.
T Consensus 31 ~~~~vLDiG~G~G~~~~~la 50 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAA 50 (187)
T ss_pred CCCEEEEECCcCCHHHHHHH
Confidence 45799999999999988775
No 62
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.74 E-value=0.00012 Score=64.98 Aligned_cols=47 Identities=17% Similarity=0.289 Sum_probs=35.2
Q ss_pred cCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecccC
Q 043411 137 LFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRS 216 (242)
Q Consensus 137 l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~ 216 (242)
+-+++|||+|.++-|+|| -|+.+|.+.-.+=|++.|-++....-++
T Consensus 95 ~g~e~SVDlI~~Aqa~HW----------------------------------Fdle~fy~~~~rvLRk~Gg~iavW~Y~d 140 (261)
T KOG3010|consen 95 LGGEESVDLITAAQAVHW----------------------------------FDLERFYKEAYRVLRKDGGLIAVWNYND 140 (261)
T ss_pred cCCCcceeeehhhhhHHh----------------------------------hchHHHHHHHHHHcCCCCCEEEEEEccC
Confidence 337999999999999999 3556677777777788776666555554
Q ss_pred C
Q 043411 217 I 217 (242)
Q Consensus 217 ~ 217 (242)
+
T Consensus 141 d 141 (261)
T KOG3010|consen 141 D 141 (261)
T ss_pred C
Confidence 4
No 63
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.73 E-value=8.8e-05 Score=63.52 Aligned_cols=107 Identities=17% Similarity=0.173 Sum_probs=60.0
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..+..+.+. ...++..|+...-... .+.........+ +..+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-----------------~~~v~~iD~s~~~~~~-------a~~~~~~~~~~~--~~~~ 98 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-----------------GANVTGIDASEENIEV-------AKLHAKKDPLLK--IEYR 98 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-----------------CCeEEEEeCCHHHHHH-------HHHHHHHcCCCc--eEEE
Confidence 4689999999999877655311 1236666664211000 011111111001 1112
Q ss_pred ccccccccCC-CCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411 130 LGSFYQRLFP-SRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM 208 (242)
Q Consensus 130 pgSFy~~l~p-~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l 208 (242)
-+++-+...+ ++++|++++..++|+..+. ..+|+.-.+-|+|||.+
T Consensus 99 ~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~---------------------------------~~~l~~~~~~L~~gG~l 145 (224)
T TIGR01983 99 CTSVEDLAEKGAKSFDVVTCMEVLEHVPDP---------------------------------QAFIRACAQLLKPGGIL 145 (224)
T ss_pred eCCHHHhhcCCCCCccEEEehhHHHhCCCH---------------------------------HHHHHHHHHhcCCCcEE
Confidence 2344222222 4789999998888874331 12677777778999999
Q ss_pred EEEeccc
Q 043411 209 FLTFLGR 215 (242)
Q Consensus 209 vl~~~g~ 215 (242)
+++...+
T Consensus 146 ~i~~~~~ 152 (224)
T TIGR01983 146 FFSTINR 152 (224)
T ss_pred EEEecCC
Confidence 9887644
No 64
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.70 E-value=0.00011 Score=69.58 Aligned_cols=111 Identities=19% Similarity=0.255 Sum_probs=65.8
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+++|+|||+|..++.+... .|+..++--|+-..-...+-+. .......++.+. .
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~---------------~P~~~~iGIEI~~~~i~~a~~k-------a~~~gL~NV~~i--~ 178 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKN---------------NPNKLFIGIEIHTPSIEQVLKQ-------IELLNLKNLLII--N 178 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHh---------------CCCCCEEEEECCHHHHHHHHHH-------HHHcCCCcEEEE--E
Confidence 468999999999888766522 1456777767652111111111 111222354433 3
Q ss_pred ccc--ccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411 131 GSF--YQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM 208 (242)
Q Consensus 131 gSF--y~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l 208 (242)
++. .-..+|++++|.++..+...|..+ +. .++ -...||+.-++-|+|||.+
T Consensus 179 ~DA~~ll~~~~~~s~D~I~lnFPdPW~Kk-rH------RRl--------------------v~~~fL~e~~RvLkpGG~l 231 (390)
T PRK14121 179 YDARLLLELLPSNSVEKIFVHFPVPWDKK-PH------RRV--------------------ISEDFLNEALRVLKPGGTL 231 (390)
T ss_pred CCHHHhhhhCCCCceeEEEEeCCCCcccc-ch------hhc--------------------cHHHHHHHHHHHcCCCcEE
Confidence 333 234689999999999887778211 00 011 1234788888888999999
Q ss_pred EEEe
Q 043411 209 FLTF 212 (242)
Q Consensus 209 vl~~ 212 (242)
.+.+
T Consensus 232 ~l~T 235 (390)
T PRK14121 232 ELRT 235 (390)
T ss_pred EEEE
Confidence 9854
No 65
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.65 E-value=0.00025 Score=50.89 Aligned_cols=102 Identities=23% Similarity=0.234 Sum_probs=59.4
Q ss_pred EEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccc
Q 043411 53 NVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGS 132 (242)
Q Consensus 53 ~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgS 132 (242)
+|+|+|||.|.++..+.+ .+...++..|+..+-....-+... .....++- .+.++
T Consensus 1 ~ildig~G~G~~~~~~~~----------------~~~~~~~~~d~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~ 55 (107)
T cd02440 1 RVLDLGCGTGALALALAS----------------GPGARVTGVDISPVALELARKAAA-------ALLADNVE--VLKGD 55 (107)
T ss_pred CeEEEcCCccHHHHHHhc----------------CCCCEEEEEeCCHHHHHHHHHHHh-------cccccceE--EEEcC
Confidence 589999999998776652 123677777775322221111000 00011111 12334
Q ss_pred cccccC-CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEE
Q 043411 133 FYQRLF-PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLT 211 (242)
Q Consensus 133 Fy~~l~-p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~ 211 (242)
+.+... +++++|+++....++++ + .+...+++.-.+-|+|||.++++
T Consensus 56 ~~~~~~~~~~~~d~i~~~~~~~~~---~-----------------------------~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 56 AEELPPEADESFDVIISDPPLHHL---V-----------------------------EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhhhccccCCceEEEEEccceeeh---h-----------------------------hHHHHHHHHHHHHcCCCCEEEEE
Confidence 444333 67789999998888875 0 22333666666667999999986
No 66
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.64 E-value=0.00036 Score=60.57 Aligned_cols=128 Identities=15% Similarity=0.197 Sum_probs=66.7
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..++.+.... |..+++..|.-. +.-...+ .........+ +..+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~---------------~~~~v~~iD~~~-~~~~~a~------~~~~~~~~~~--~~~~ 142 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER---------------PDARVTAVDISP-EALAVAR------KNAARLGLDN--VTFL 142 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC---------------CCCEEEEEECCH-HHHHHHH------HHHHHcCCCe--EEEE
Confidence 34699999999998888775321 235777777642 1111111 1111111112 2234
Q ss_pred ccccccccCCCCceeEEEcccceeeccc---CCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411 130 LGSFYQRLFPSRGINFIHSSYSVHWLSK---VPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 130 pgSFy~~l~p~~svdl~~Ss~alhWLs~---~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG 206 (242)
.+++.+ .++++++|++++.--.+..+. .+..+... .+..+.. -......++..|++.-.+.|+|||
T Consensus 143 ~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~---------e~~~~~~-~~~~~~~~~~~~i~~~~~~L~~gG 211 (251)
T TIGR03534 143 QSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFH---------EPRLALF-GGEDGLDFYRRIIAQAPRLLKPGG 211 (251)
T ss_pred ECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhc---------CCHHHHc-CCCcHHHHHHHHHHHHHHhcccCC
Confidence 557655 457889999998432221111 11100000 0000000 011234566779999899999999
Q ss_pred eEEEEe
Q 043411 207 RMFLTF 212 (242)
Q Consensus 207 ~lvl~~ 212 (242)
.+++..
T Consensus 212 ~~~~~~ 217 (251)
T TIGR03534 212 WLLLEI 217 (251)
T ss_pred EEEEEE
Confidence 999854
No 67
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.64 E-value=0.00037 Score=61.92 Aligned_cols=152 Identities=11% Similarity=0.209 Sum_probs=84.0
Q ss_pred hHHHhhHHHHHHHHH--------HHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCC
Q 043411 17 SYAKNSNIQRTVMSK--------AWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLP 88 (242)
Q Consensus 17 sY~~nS~~Q~~~~~~--------~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~ 88 (242)
-|.+++..+..+... -..+|.+...++..-....+.+|+++|||.|...+-+++.. +.+
T Consensus 30 ~y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~-------------~n~ 96 (264)
T KOG2361|consen 30 KYEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTS-------------PNN 96 (264)
T ss_pred hhhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcC-------------CCC
Confidence 355566555554433 35567777776654222223499999999998877666222 334
Q ss_pred ceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCc
Q 043411 89 EFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRD 168 (242)
Q Consensus 89 ~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~ 168 (242)
.+.+|..|-..|- -.+.+.-..... ..-..|+.-.-.+=...-++++|+|++...+. ||-+|+.
T Consensus 97 ~l~v~acDfsp~A-i~~vk~~~~~~e-----~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv---LSAi~pe------- 160 (264)
T KOG2361|consen 97 RLKVYACDFSPRA-IELVKKSSGYDE-----SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV---LSAIHPE------- 160 (264)
T ss_pred CeEEEEcCCChHH-HHHHHhccccch-----hhhcccceeccchhccCCCCcCccceEEEEEE---EeccChH-------
Confidence 5999999876422 222222211100 00122333222222456667888888766433 3444441
Q ss_pred eEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecccCCC
Q 043411 169 IYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIA 218 (242)
Q Consensus 169 i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~ 218 (242)
-|.+-+....+=|+|||.|++-=.|+.+.
T Consensus 161 ---------------------k~~~a~~nl~~llKPGG~llfrDYg~~Dl 189 (264)
T KOG2361|consen 161 ---------------------KMQSVIKNLRTLLKPGGSLLFRDYGRYDL 189 (264)
T ss_pred ---------------------HHHHHHHHHHHHhCCCcEEEEeecccchH
Confidence 12223444444559999999998888664
No 68
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.63 E-value=0.0006 Score=61.89 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCceEEEEecccCC
Q 043411 182 AFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSI 217 (242)
Q Consensus 182 ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~ 217 (242)
+|..-..+.|..|++.-.+-|+|||+|++-.++...
T Consensus 146 mfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 146 MFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred hHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 333334466777999999999999999999988766
No 69
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.61 E-value=0.00036 Score=63.12 Aligned_cols=124 Identities=18% Similarity=0.236 Sum_probs=64.2
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
+.+|+|+|||+|..++.+.... |..+++-.|... +.-.+.+ .........+ -+..+.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~---------------~~~~v~avDis~-~al~~A~------~n~~~~~~~~-~i~~~~ 178 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAF---------------PEAEVDAVDISP-DALAVAE------INIERHGLED-RVTLIQ 178 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHC---------------CCCEEEEEECCH-HHHHHHH------HHHHHcCCCC-cEEEEE
Confidence 4689999999999888776322 246777777752 1111111 1111111110 122344
Q ss_pred cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHH----HHHH--HHHHHHHHHHHHHHHhhhcc
Q 043411 131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVC----QAFW--EQFQRDFSAFLSLRSEEIVS 204 (242)
Q Consensus 131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~----~ay~--~q~~~D~~~FL~~Ra~EL~p 204 (242)
+++++.+ |++++|+++|. |+-+..+. + ...++++. .|.. +......+.|++.-.+-|+|
T Consensus 179 ~D~~~~~-~~~~fD~Iv~N---------PPy~~~~~--~---~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~ 243 (284)
T TIGR03533 179 SDLFAAL-PGRKYDLIVSN---------PPYVDAED--M---ADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE 243 (284)
T ss_pred Cchhhcc-CCCCccEEEEC---------CCCCCccc--h---hhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC
Confidence 5665543 66789999983 33222100 0 00001110 0000 01123456688888888999
Q ss_pred CceEEEEe
Q 043411 205 GGRMFLTF 212 (242)
Q Consensus 205 GG~lvl~~ 212 (242)
||++++-+
T Consensus 244 gG~l~~e~ 251 (284)
T TIGR03533 244 NGVLVVEV 251 (284)
T ss_pred CCEEEEEE
Confidence 99998754
No 70
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.58 E-value=3.5e-05 Score=67.29 Aligned_cols=105 Identities=21% Similarity=0.304 Sum_probs=58.8
Q ss_pred CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhh--cCCCCcee
Q 043411 49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKK--DKFGPCFI 126 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~--~~~~~~f~ 126 (242)
+...+.+|.|+|-|+-|-.++..+. .++ ||. |.+.-|-.-. +..+.. .+..++|.
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f--------------~~V-----DlV--Ep~~~Fl~~a--~~~l~~~~~~v~~~~~ 110 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVF--------------DEV-----DLV--EPVEKFLEQA--KEYLGKDNPRVGEFYC 110 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC---------------SEE-----EEE--ES-HHHHHHH--HHHTCCGGCCEEEEEE
T ss_pred CCcceEEecccccchhHHHHHHHhc--------------CEe-----EEe--ccCHHHHHHH--HHHhcccCCCcceEEe
Confidence 3589999999999998875541110 112 222 4444443222 111211 12234554
Q ss_pred eccccccccccCCC-CceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411 127 AGMLGSFYQRLFPS-RGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG 205 (242)
Q Consensus 127 ~~vpgSFy~~l~p~-~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG 205 (242)
.|. +..-|+ +..|+||.=|++..|++ .|+..||+++.+.|+||
T Consensus 111 ~gL-----Q~f~P~~~~YDlIW~QW~lghLTD-------------------------------~dlv~fL~RCk~~L~~~ 154 (218)
T PF05891_consen 111 VGL-----QDFTPEEGKYDLIWIQWCLGHLTD-------------------------------EDLVAFLKRCKQALKPN 154 (218)
T ss_dssp S-G-----GG----TT-EEEEEEES-GGGS-H-------------------------------HHHHHHHHHHHHHEEEE
T ss_pred cCH-----hhccCCCCcEeEEEehHhhccCCH-------------------------------HHHHHHHHHHHHhCcCC
Confidence 442 333465 79999999777777655 68999999999999999
Q ss_pred ceEEEEe
Q 043411 206 GRMFLTF 212 (242)
Q Consensus 206 G~lvl~~ 212 (242)
|++++=-
T Consensus 155 G~IvvKE 161 (218)
T PF05891_consen 155 GVIVVKE 161 (218)
T ss_dssp EEEEEEE
T ss_pred cEEEEEe
Confidence 9999853
No 71
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.54 E-value=0.0003 Score=60.80 Aligned_cols=44 Identities=14% Similarity=0.297 Sum_probs=33.1
Q ss_pred CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEeccc
Q 043411 139 PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGR 215 (242)
Q Consensus 139 p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~ 215 (242)
+.+.+|+++++..+++..+. ..+|+...+-|+|||+++++..++
T Consensus 111 ~~~~fD~Ii~~~~l~~~~~~---------------------------------~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 111 HPGQFDVVTCMEMLEHVPDP---------------------------------ASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred cCCCccEEEEhhHhhccCCH---------------------------------HHHHHHHHHHcCCCcEEEEEecCC
Confidence 56799999998887774321 126777777789999999987754
No 72
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.51 E-value=0.00068 Score=58.15 Aligned_cols=82 Identities=11% Similarity=0.109 Sum_probs=43.7
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||+|..|..+.+.+ . +.-+|+--|.-. +.-... ++.+...+..+ -+..+.
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~-~-------------~~g~V~~iD~~~-~~~~~a------~~~l~~~~~~~-~v~~~~ 130 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAI-E-------------RRGKVYTVEIVK-ELAIYA------AQNIERLGYWG-VVEVYH 130 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhc-C-------------CCCEEEEEeCCH-HHHHHH------HHHHHHcCCCC-cEEEEE
Confidence 4799999999999987765322 1 123566555542 111111 11111111111 112344
Q ss_pred cccccccCCCCceeEEEcccceee
Q 043411 131 GSFYQRLFPSRGINFIHSSYSVHW 154 (242)
Q Consensus 131 gSFy~~l~p~~svdl~~Ss~alhW 154 (242)
+++.+-+.+.+++|.+++..++++
T Consensus 131 ~d~~~~~~~~~~fD~Ii~~~~~~~ 154 (205)
T PRK13944 131 GDGKRGLEKHAPFDAIIVTAAAST 154 (205)
T ss_pred CCcccCCccCCCccEEEEccCcch
Confidence 566544445578999999877654
No 73
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.47 E-value=0.00016 Score=64.85 Aligned_cols=29 Identities=34% Similarity=0.586 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhhccCceEEEEecccCC
Q 043411 189 RDFSAFLSLRSEEIVSGGRMFLTFLGRSI 217 (242)
Q Consensus 189 ~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~ 217 (242)
+|...||++..+-|+|||+|++++.-|.-
T Consensus 172 ~dp~~~l~~l~~~lkP~G~lfittinrt~ 200 (282)
T KOG1270|consen 172 KDPQEFLNCLSALLKPNGRLFITTINRTI 200 (282)
T ss_pred hCHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence 45666999999999999999999998754
No 74
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.44 E-value=0.00022 Score=63.17 Aligned_cols=107 Identities=18% Similarity=0.255 Sum_probs=62.7
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
-.+|+|+|||-|..|..+. +. | ..|+-.|+-. .--.+- +++... ..+.+-=.+
T Consensus 60 g~~vLDvGCGgG~Lse~mA--------r~----G-----a~VtgiD~se-~~I~~A--------k~ha~e-~gv~i~y~~ 112 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLA--------RL----G-----ASVTGIDASE-KPIEVA--------KLHALE-SGVNIDYRQ 112 (243)
T ss_pred CCeEEEecCCccHhhHHHH--------HC----C-----CeeEEecCCh-HHHHHH--------HHhhhh-ccccccchh
Confidence 5899999999997766554 21 2 7788888862 000000 110000 011100011
Q ss_pred cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411 131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
..-.+-....+++|+|.| ++=|.++|.+ ..|++.+++-+||||.|++
T Consensus 113 ~~~edl~~~~~~FDvV~c---mEVlEHv~dp------------------------------~~~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 113 ATVEDLASAGGQFDVVTC---MEVLEHVPDP------------------------------ESFLRACAKLVKPGGILFL 159 (243)
T ss_pred hhHHHHHhcCCCccEEEE---hhHHHccCCH------------------------------HHHHHHHHHHcCCCcEEEE
Confidence 122122334489999998 4445555552 1199999999999999999
Q ss_pred EecccCC
Q 043411 211 TFLGRSI 217 (242)
Q Consensus 211 ~~~g~~~ 217 (242)
+++-|.-
T Consensus 160 STinrt~ 166 (243)
T COG2227 160 STINRTL 166 (243)
T ss_pred eccccCH
Confidence 9988643
No 75
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.00033 Score=63.96 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=64.0
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||-|...+.+.+. .|..++.+.|.- + +.+...+.-+..+...+. ..+.
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~---------------~p~~~vtmvDvn---~----~Av~~ar~Nl~~N~~~~~--~v~~ 214 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKK---------------SPQAKLTLVDVN---A----RAVESARKNLAANGVENT--EVWA 214 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHh---------------CCCCeEEEEecC---H----HHHHHHHHhHHHcCCCcc--EEEE
Confidence 459999999999988877622 257888888875 2 222222222332333332 1223
Q ss_pred cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411 131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
.+-|+.+.. ++|+|+| .|+-.. |. ..+..+ -.++++.=++.|++||.|.+
T Consensus 215 s~~~~~v~~--kfd~Iis---------NPPfh~---G~--------~v~~~~--------~~~~i~~A~~~L~~gGeL~i 264 (300)
T COG2813 215 SNLYEPVEG--KFDLIIS---------NPPFHA---GK--------AVVHSL--------AQEIIAAAARHLKPGGELWI 264 (300)
T ss_pred ecccccccc--cccEEEe---------CCCccC---Cc--------chhHHH--------HHHHHHHHHHhhccCCEEEE
Confidence 356666666 8999999 344211 11 011100 01377777788899999998
Q ss_pred Eec
Q 043411 211 TFL 213 (242)
Q Consensus 211 ~~~ 213 (242)
..-
T Consensus 265 Van 267 (300)
T COG2813 265 VAN 267 (300)
T ss_pred EEc
Confidence 766
No 76
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.41 E-value=0.0019 Score=55.32 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=16.5
Q ss_pred CccEEeeecCCCCcchHHHH
Q 043411 50 GCFNVADLGCSSGPNTLLVV 69 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~ 69 (242)
...+|+|+|||+|..|..+.
T Consensus 78 ~~~~VLeiG~GsG~~t~~la 97 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLA 97 (212)
T ss_pred CCCEEEEECCCccHHHHHHH
Confidence 45899999999999987443
No 77
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.41 E-value=0.0028 Score=54.27 Aligned_cols=20 Identities=20% Similarity=0.501 Sum_probs=16.8
Q ss_pred CccEEeeecCCCCcchHHHH
Q 043411 50 GCFNVADLGCSSGPNTLLVV 69 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~ 69 (242)
...+|+|+|||+|..+..+.
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~ 82 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLA 82 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHH
Confidence 45799999999999887664
No 78
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.41 E-value=0.00077 Score=60.15 Aligned_cols=127 Identities=12% Similarity=0.162 Sum_probs=72.2
Q ss_pred CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411 49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG 128 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~ 128 (242)
+..-+|+|+|||+|..++.+.+.. +..++..-++-.-......+++.. + .-.-.+..
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~---------------~~a~I~~VEiq~~~a~~A~~nv~l-------n-~l~~ri~v 99 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRT---------------EKAKIVGVEIQEEAAEMAQRNVAL-------N-PLEERIQV 99 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccC---------------CCCcEEEEEeCHHHHHHHHHHHHh-------C-cchhceeE
Confidence 348999999999999999887442 112333223321111111111110 0 00011112
Q ss_pred ccccc--ccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411 129 MLGSF--YQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 129 vpgSF--y~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG 206 (242)
+-.++ +.+-.+..++|+|+| .|+-...++. ..+.+..+..+.+..-++..+++.-++=|+|||
T Consensus 100 ~~~Di~~~~~~~~~~~fD~Ii~---------NPPyf~~~~~------~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G 164 (248)
T COG4123 100 IEADIKEFLKALVFASFDLIIC---------NPPYFKQGSR------LNENPLRAIARHEITLDLEDLIRAAAKLLKPGG 164 (248)
T ss_pred ehhhHHHhhhcccccccCEEEe---------CCCCCCCccc------cCcChhhhhhhhhhcCCHHHHHHHHHHHccCCC
Confidence 22233 133334448899999 4664433222 124455566677777889999999999999999
Q ss_pred eEEEEec
Q 043411 207 RMFLTFL 213 (242)
Q Consensus 207 ~lvl~~~ 213 (242)
.+.+...
T Consensus 165 ~l~~V~r 171 (248)
T COG4123 165 RLAFVHR 171 (248)
T ss_pred EEEEEec
Confidence 9998754
No 79
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.39 E-value=0.0011 Score=56.99 Aligned_cols=79 Identities=14% Similarity=0.086 Sum_probs=42.5
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..|..+.... .++.+|+-.|.-. +.-..- +..+......+ +..+
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~--------------~~~g~V~~vD~~~-~~~~~A------~~~~~~~g~~~--v~~~ 133 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIV--------------GRDGLVVSIERIP-ELAEKA------ERRLRKLGLDN--VIVI 133 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHh--------------CCCCEEEEEeCCH-HHHHHH------HHHHHHCCCCC--eEEE
Confidence 45799999999999998665322 0235566666541 111111 11111111122 1233
Q ss_pred ccccccccCCCCceeEEEcccc
Q 043411 130 LGSFYQRLFPSRGINFIHSSYS 151 (242)
Q Consensus 130 pgSFy~~l~p~~svdl~~Ss~a 151 (242)
.++..+-+.+.+.+|++++..+
T Consensus 134 ~~d~~~~~~~~~~fD~Ii~~~~ 155 (215)
T TIGR00080 134 VGDGTQGWEPLAPYDRIYVTAA 155 (215)
T ss_pred ECCcccCCcccCCCCEEEEcCC
Confidence 4566554445578999987543
No 80
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.34 E-value=0.0019 Score=55.81 Aligned_cols=80 Identities=13% Similarity=0.090 Sum_probs=43.4
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..|..+...+ . +.-.|+--|.-. ++-...+ ..+......+ +..+
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~-~-------------~~~~V~~vE~~~-~~~~~a~------~~l~~~g~~~--v~~~ 132 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIV-G-------------KSGKVVTIERIP-ELAEKAK------KTLKKLGYDN--VEVI 132 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhc-C-------------CCCEEEEEeCCH-HHHHHHH------HHHHHcCCCC--eEEE
Confidence 35799999999999997665322 1 123445444421 2222222 1111111122 2334
Q ss_pred ccccccccCCCCceeEEEcccce
Q 043411 130 LGSFYQRLFPSRGINFIHSSYSV 152 (242)
Q Consensus 130 pgSFy~~l~p~~svdl~~Ss~al 152 (242)
-++...-..+.+.+|+|++..++
T Consensus 133 ~gd~~~~~~~~~~fD~I~~~~~~ 155 (212)
T PRK13942 133 VGDGTLGYEENAPYDRIYVTAAG 155 (212)
T ss_pred ECCcccCCCcCCCcCEEEECCCc
Confidence 55665555667889999886654
No 81
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.33 E-value=0.0021 Score=55.83 Aligned_cols=117 Identities=12% Similarity=0.096 Sum_probs=70.4
Q ss_pred EEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec-ccc
Q 043411 53 NVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG-MLG 131 (242)
Q Consensus 53 ~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~-vpg 131 (242)
+|+|+|||||--+..+.+.+ |.+++.=+|...+-+.++-.-+... .+. +...++.+-. -+.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~l---------------P~l~WqPSD~~~~~~~sI~a~~~~~--~~~-Nv~~P~~lDv~~~~ 89 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQAL---------------PHLTWQPSDPDDNLRPSIRAWIAEA--GLP-NVRPPLALDVSAPP 89 (204)
T ss_pred eEEEEcCCccHHHHHHHHHC---------------CCCEEcCCCCChHHHhhHHHHHHhc--CCc-ccCCCeEeecCCCC
Confidence 79999999997776665333 5688888999876665554433211 111 1111222211 110
Q ss_pred cccc--ccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411 132 SFYQ--RLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 132 SFy~--~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
.=.. -.++.+++|.+++.+.+|-.+- +. -..+++.-++-|++||.|+
T Consensus 90 w~~~~~~~~~~~~~D~i~~~N~lHI~p~-------------------~~------------~~~lf~~a~~~L~~gG~L~ 138 (204)
T PF06080_consen 90 WPWELPAPLSPESFDAIFCINMLHISPW-------------------SA------------VEGLFAGAARLLKPGGLLF 138 (204)
T ss_pred CccccccccCCCCcceeeehhHHHhcCH-------------------HH------------HHHHHHHHHHhCCCCCEEE
Confidence 0001 1126779999999999997432 11 1226777788999999999
Q ss_pred EEecccCCC
Q 043411 210 LTFLGRSIA 218 (242)
Q Consensus 210 l~~~g~~~~ 218 (242)
+--+=..++
T Consensus 139 ~YGPF~~~G 147 (204)
T PF06080_consen 139 LYGPFNRDG 147 (204)
T ss_pred EeCCcccCC
Confidence 876644444
No 82
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.33 E-value=0.0021 Score=58.89 Aligned_cols=74 Identities=20% Similarity=0.274 Sum_probs=41.7
Q ss_pred cEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecccc
Q 043411 52 FNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLG 131 (242)
Q Consensus 52 ~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpg 131 (242)
.+|+|+|||+|..++.+.... |..+|+..|+-. +.-.+.+. .....+..+ -+..+-+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~---------------p~~~V~avDis~-~al~~A~~------n~~~~~l~~-~i~~~~~ 191 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF---------------PDAEVDAVDISP-DALAVAEI------NIERHGLED-RVTLIES 191 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC---------------CCCEEEEEeCCH-HHHHHHHH------HHHHhCCCC-cEEEEEC
Confidence 689999999999888765221 346788778752 11111111 111111111 1223455
Q ss_pred ccccccCCCCceeEEEcc
Q 043411 132 SFYQRLFPSRGINFIHSS 149 (242)
Q Consensus 132 SFy~~l~p~~svdl~~Ss 149 (242)
++.+.+ |++++|+++|.
T Consensus 192 D~~~~l-~~~~fDlIvsN 208 (307)
T PRK11805 192 DLFAAL-PGRRYDLIVSN 208 (307)
T ss_pred chhhhC-CCCCccEEEEC
Confidence 765543 66789999984
No 83
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.31 E-value=0.0023 Score=55.65 Aligned_cols=119 Identities=12% Similarity=0.071 Sum_probs=62.0
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHh--hhh-cCCCCcee
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYER--IKK-DKFGPCFI 126 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~--l~~-~~~~~~f~ 126 (242)
...||+|+|||.|.|++.+.+ + -.+|+--|+...=-..+++...-.... +.. ......-+
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~--------~---------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAE--------Q---------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNI 96 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHh--------C---------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCce
Confidence 447999999999999998862 1 155665555422111111110000000 000 00000111
Q ss_pred eccccccccccC-CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411 127 AGMLGSFYQRLF-PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG 205 (242)
Q Consensus 127 ~~vpgSFy~~l~-p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG 205 (242)
..+-++|++.-. +...+|+++-..++| .+|+ .+..++++.-.+-|+||
T Consensus 97 ~~~~~D~~~~~~~~~~~fD~i~D~~~~~---~l~~----------------------------~~R~~~~~~l~~lLkpg 145 (213)
T TIGR03840 97 EIFCGDFFALTAADLGPVDAVYDRAALI---ALPE----------------------------EMRQRYAAHLLALLPPG 145 (213)
T ss_pred EEEEccCCCCCcccCCCcCEEEechhhc---cCCH----------------------------HHHHHHHHHHHHHcCCC
Confidence 223335544221 134678888877776 3444 23344677777888999
Q ss_pred ceEEEEecccC
Q 043411 206 GRMFLTFLGRS 216 (242)
Q Consensus 206 G~lvl~~~g~~ 216 (242)
|++++.++..+
T Consensus 146 G~~ll~~~~~~ 156 (213)
T TIGR03840 146 ARQLLITLDYD 156 (213)
T ss_pred CeEEEEEEEcC
Confidence 98777766553
No 84
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.28 E-value=0.0016 Score=54.73 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhhccCceEEEEecc
Q 043411 190 DFSAFLSLRSEEIVSGGRMFLTFLG 214 (242)
Q Consensus 190 D~~~FL~~Ra~EL~pGG~lvl~~~g 214 (242)
+...+|+.-.+-|+|||++++..+.
T Consensus 124 ~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 124 LVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred HHHHHHHHHHHHccCCCEEEEEEcc
Confidence 4566888888899999999997543
No 85
>PRK04266 fibrillarin; Provisional
Probab=97.27 E-value=0.0018 Score=56.83 Aligned_cols=20 Identities=30% Similarity=0.240 Sum_probs=16.9
Q ss_pred CccEEeeecCCCCcchHHHH
Q 043411 50 GCFNVADLGCSSGPNTLLVV 69 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~ 69 (242)
...+|+|+|||+|..|+.+.
T Consensus 72 ~g~~VlD~G~G~G~~~~~la 91 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVS 91 (226)
T ss_pred CCCEEEEEccCCCHHHHHHH
Confidence 34799999999999988765
No 86
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.26 E-value=0.00048 Score=58.26 Aligned_cols=20 Identities=15% Similarity=0.434 Sum_probs=17.8
Q ss_pred CCCCceeEEEcccceeeccc
Q 043411 138 FPSRGINFIHSSYSVHWLSK 157 (242)
Q Consensus 138 ~p~~svdl~~Ss~alhWLs~ 157 (242)
++++++|+++++.++||+.+
T Consensus 71 ~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 71 FPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred cCCCCcCEEEEhhHhHcCcC
Confidence 57889999999999999865
No 87
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.26 E-value=0.0005 Score=66.54 Aligned_cols=107 Identities=20% Similarity=0.299 Sum_probs=60.1
Q ss_pred CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411 49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG 128 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~ 128 (242)
...-+++|+|||+|..+..+++ + .-..+.+-.+|-- .+.-.|..-.. .+..+ +
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~--------r------~V~t~s~a~~d~~--~~qvqfaleRG---------vpa~~--~ 168 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLE--------R------NVTTMSFAPNDEH--EAQVQFALERG---------VPAMI--G 168 (506)
T ss_pred CceEEEEeccceeehhHHHHhh--------C------CceEEEcccccCC--chhhhhhhhcC---------cchhh--h
Confidence 3567789999999998877662 1 1112333333332 11111221110 01111 2
Q ss_pred cccccccccCCCCceeEEEccccee-ecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411 129 MLGSFYQRLFPSRGINFIHSSYSVH-WLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR 207 (242)
Q Consensus 129 vpgSFy~~l~p~~svdl~~Ss~alh-WLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~ 207 (242)
+-|+- +-.||++++|++||+-|+- |-+. .| +|. -|+.+.| +|||+
T Consensus 169 ~~~s~-rLPfp~~~fDmvHcsrc~i~W~~~--------~g-~~l-----------------~evdRvL-------RpGGy 214 (506)
T PF03141_consen 169 VLGSQ-RLPFPSNAFDMVHCSRCLIPWHPN--------DG-FLL-----------------FEVDRVL-------RPGGY 214 (506)
T ss_pred hhccc-cccCCccchhhhhcccccccchhc--------cc-cee-----------------ehhhhhh-------ccCce
Confidence 33333 5567999999999999875 7443 12 221 2334455 99999
Q ss_pred EEEEecccC
Q 043411 208 MFLTFLGRS 216 (242)
Q Consensus 208 lvl~~~g~~ 216 (242)
++++..-..
T Consensus 215 fv~S~ppv~ 223 (506)
T PF03141_consen 215 FVLSGPPVY 223 (506)
T ss_pred EEecCCccc
Confidence 999877554
No 88
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.26 E-value=0.0013 Score=59.34 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhhccCceEEEEecccCC
Q 043411 189 RDFSAFLSLRSEEIVSGGRMFLTFLGRSI 217 (242)
Q Consensus 189 ~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~ 217 (242)
+++..|++.-++-|+|||++++-.++..+
T Consensus 143 ~~~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 143 KNYPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp GGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred hHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 35566999999999999999998887654
No 89
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.25 E-value=0.0015 Score=58.76 Aligned_cols=127 Identities=16% Similarity=0.272 Sum_probs=63.1
Q ss_pred cEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecccc
Q 043411 52 FNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLG 131 (242)
Q Consensus 52 ~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpg 131 (242)
.+|+|+|||+|..++.+.... +..+++..|.-. +--.+.+ .........+ -+..+.+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~---------------~~~~v~avDis~-~al~~a~------~n~~~~~~~~-~v~~~~~ 172 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF---------------PNAEVIAVDISP-DALAVAE------ENAEKNQLEH-RVEFIQS 172 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC---------------CCCEEEEEECCH-HHHHHHH------HHHHHcCCCC-cEEEEEC
Confidence 689999999998888765321 246788888742 1111111 0111111111 1223445
Q ss_pred ccccccCCCCceeEEEcccceeecccCCCcccCCCCc-e-EEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411 132 SFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRD-I-YITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 132 SFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~-i-~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
++++. ++.+.+|+++|. |+-+..+.-. . -+..-.|..+... -.-...+.+.+++.-.+-|+|||+|+
T Consensus 173 d~~~~-~~~~~fDlIvsN---------PPyi~~~~~~~~~~~~~~eP~~AL~g-g~dgl~~~~~ii~~a~~~L~~gG~l~ 241 (284)
T TIGR00536 173 NLFEP-LAGQKIDIIVSN---------PPYIDEEDLADLPNVVRFEPLLALVG-GDDGLNILRQIIELAPDYLKPNGFLV 241 (284)
T ss_pred chhcc-CcCCCccEEEEC---------CCCCCcchhhcCCcccccCcHHHhcC-CCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 76654 355589999993 3222110000 0 0000001000000 01123456668888888899999998
Q ss_pred EEe
Q 043411 210 LTF 212 (242)
Q Consensus 210 l~~ 212 (242)
+-.
T Consensus 242 ~e~ 244 (284)
T TIGR00536 242 CEI 244 (284)
T ss_pred EEE
Confidence 754
No 90
>PLN03075 nicotianamine synthase; Provisional
Probab=97.23 E-value=0.0028 Score=57.93 Aligned_cols=110 Identities=15% Similarity=0.134 Sum_probs=60.7
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
.+-+|+|+|||.|+.|..++..- -.|.-++.--|... +-+.+-+.+..-...+ ...-.|..+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~-------------~~p~~~~~giD~d~-~ai~~Ar~~~~~~~gL---~~rV~F~~~- 184 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKH-------------HLPTTSFHNFDIDP-SANDVARRLVSSDPDL---SKRMFFHTA- 184 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHh-------------cCCCCEEEEEeCCH-HHHHHHHHHhhhccCc---cCCcEEEEC-
Confidence 57899999999998877655211 11334555555542 2222222221100011 011233333
Q ss_pred ccccccccC-CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411 130 LGSFYQRLF-PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM 208 (242)
Q Consensus 130 pgSFy~~l~-p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l 208 (242)
+-.+ +. +.+.+|++++. ++|-+++.+. ...|+.-++-|+|||.+
T Consensus 185 --Da~~-~~~~l~~FDlVF~~-ALi~~dk~~k-------------------------------~~vL~~l~~~LkPGG~L 229 (296)
T PLN03075 185 --DVMD-VTESLKEYDVVFLA-ALVGMDKEEK-------------------------------VKVIEHLGKHMAPGALL 229 (296)
T ss_pred --chhh-cccccCCcCEEEEe-cccccccccH-------------------------------HHHHHHHHHhcCCCcEE
Confidence 2212 23 24789999999 6665433211 12677778889999999
Q ss_pred EEEe
Q 043411 209 FLTF 212 (242)
Q Consensus 209 vl~~ 212 (242)
++..
T Consensus 230 vlr~ 233 (296)
T PLN03075 230 MLRS 233 (296)
T ss_pred EEec
Confidence 9987
No 91
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.22 E-value=0.0019 Score=61.73 Aligned_cols=123 Identities=19% Similarity=0.207 Sum_probs=63.2
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||+|..++.+.... |..+++..|+.. +.-.+.+ ....... .-+..+-
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~---------------p~a~VtAVDiS~-~ALe~Ar------eNa~~~g---~rV~fi~ 306 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALER---------------PDAFVRASDISP-PALETAR------KNAADLG---ARVEFAH 306 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhC---------------CCCEEEEEECCH-HHHHHHH------HHHHHcC---CcEEEEE
Confidence 3589999999999988765211 346777777741 1111111 1111111 1223355
Q ss_pred cccccccCC-CCceeEEEcccceeecccCCCcccCCCCceEE--cCCCChHHHHHHH--HHHHHHHHHHHHHHHhhhccC
Q 043411 131 GSFYQRLFP-SRGINFIHSSYSVHWLSKVPENLENNKRDIYI--TKSSPPSVCQAFW--EQFQRDFSAFLSLRSEEIVSG 205 (242)
Q Consensus 131 gSFy~~l~p-~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~--~~~s~~~v~~ay~--~q~~~D~~~FL~~Ra~EL~pG 205 (242)
+++.+..+| .+++|+++|. |+-+...+....- .+-.|. .|.. +.....++++++.-.+-|+||
T Consensus 307 gDl~e~~l~~~~~FDLIVSN---------PPYI~~~e~~l~~~~v~~EP~---~AL~gG~dGL~~yr~Ii~~a~~~Lkpg 374 (423)
T PRK14966 307 GSWFDTDMPSEGKWDIIVSN---------PPYIENGDKHLLQGDLRFEPQ---IALTDFSDGLSCIRTLAQGAPDRLAEG 374 (423)
T ss_pred cchhccccccCCCccEEEEC---------CCCCCcchhhhcchhhhcCHH---HHhhCCCchHHHHHHHHHHHHHhcCCC
Confidence 677665554 4689999993 4332211100000 000010 1111 012233556887777889999
Q ss_pred ceEEE
Q 043411 206 GRMFL 210 (242)
Q Consensus 206 G~lvl 210 (242)
|++++
T Consensus 375 G~lil 379 (423)
T PRK14966 375 GFLLL 379 (423)
T ss_pred cEEEE
Confidence 99875
No 92
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.21 E-value=0.0045 Score=57.56 Aligned_cols=143 Identities=19% Similarity=0.280 Sum_probs=92.0
Q ss_pred ccCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCC
Q 043411 9 MNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLP 88 (242)
Q Consensus 9 M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~ 88 (242)
|.||-+..+|.-+-.+|+..-. ...++.+.+.+.+.. +...-..+|.|-|.|..+-.+++.. |
T Consensus 138 ~l~~~~~~~~~~~~~~~~sm~~-l~~~~~~~il~~~~G-f~~v~~avDvGgGiG~v~k~ll~~f---------------p 200 (342)
T KOG3178|consen 138 MLGGYGGADERFSKDFNGSMSF-LSTLVMKKILEVYTG-FKGVNVAVDVGGGIGRVLKNLLSKY---------------P 200 (342)
T ss_pred hhhhhcccccccHHHHHHHHHH-HHHHHHHhhhhhhcc-cccCceEEEcCCcHhHHHHHHHHhC---------------C
Confidence 5677676666555556555432 333333333333332 3457889999999999888776422 3
Q ss_pred ceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCc
Q 043411 89 EFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRD 168 (242)
Q Consensus 89 ~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~ 168 (242)
.+..+==||| .+.+.-+.+. ++ +.-+.|+++.. .|.+- +||--|.||=+.+
T Consensus 201 ~ik~infdlp-----~v~~~a~~~~-------~g---V~~v~gdmfq~-~P~~d--aI~mkWiLhdwtD----------- 251 (342)
T KOG3178|consen 201 HIKGINFDLP-----FVLAAAPYLA-------PG---VEHVAGDMFQD-TPKGD--AIWMKWILHDWTD----------- 251 (342)
T ss_pred CCceeecCHH-----HHHhhhhhhc-------CC---cceeccccccc-CCCcC--eEEEEeecccCCh-----------
Confidence 4666644555 2222222110 01 33478899988 88875 9999888873222
Q ss_pred eEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecccCC
Q 043411 169 IYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSI 217 (242)
Q Consensus 169 i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~ 217 (242)
+|+..||+++.+-|.|||.+++.-.-.++
T Consensus 252 --------------------edcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 252 --------------------EDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred --------------------HHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 68888999999999999999998884443
No 93
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.20 E-value=0.0045 Score=53.19 Aligned_cols=51 Identities=16% Similarity=0.110 Sum_probs=28.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHH
Q 043411 18 YAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVV 69 (242)
Q Consensus 18 Y~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~ 69 (242)
|+.-..++..+..-..++.+..+..+.. ......+|+|+|||+|..+..+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~la 74 (219)
T TIGR02021 24 GDPVSRVRQTVREGRAAMRRKLLDWLPK-DPLKGKRVLDAGCGTGLLSIELA 74 (219)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeCCCCHHHHHHH
Confidence 4444444444433333444444433321 12346899999999998877664
No 94
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.18 E-value=0.0011 Score=57.78 Aligned_cols=92 Identities=15% Similarity=0.225 Sum_probs=50.9
Q ss_pred CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCC-CchHHHhhcCchhHHhhhhcCCCCceee
Q 043411 49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPG-NDFNSIFESLPDFYERIKKDKFGPCFIA 127 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~-NDFn~lf~~l~~~~~~l~~~~~~~~f~~ 127 (242)
|+..+|||+|||.+..+..+ . ....|+-=||.. || +|
T Consensus 71 ~~~~viaD~GCGdA~la~~~--------~----------~~~~V~SfDLva~n~-----------------------~V- 108 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAV--------P----------NKHKVHSFDLVAPNP-----------------------RV- 108 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--------------------S---EEEEESS-SST-----------------------TE-
T ss_pred CCCEEEEECCCchHHHHHhc--------c----------cCceEEEeeccCCCC-----------------------CE-
Confidence 56789999999999876221 1 124555556652 11 11
Q ss_pred ccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411 128 GMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR 207 (242)
Q Consensus 128 ~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~ 207 (242)
+.-+.-.--++++|+|+++-+-||+= .||..||+.-.+=|+|||.
T Consensus 109 -tacdia~vPL~~~svDv~VfcLSLMG----------------------------------Tn~~~fi~EA~RvLK~~G~ 153 (219)
T PF05148_consen 109 -TACDIANVPLEDESVDVAVFCLSLMG----------------------------------TNWPDFIREANRVLKPGGI 153 (219)
T ss_dssp -EES-TTS-S--TT-EEEEEEES---S----------------------------------S-HHHHHHHHHHHEEEEEE
T ss_pred -EEecCccCcCCCCceeEEEEEhhhhC----------------------------------CCcHHHHHHHHheeccCcE
Confidence 11233233458999999998776653 3677799888899999999
Q ss_pred EEEEecccCC
Q 043411 208 MFLTFLGRSI 217 (242)
Q Consensus 208 lvl~~~g~~~ 217 (242)
|.+......=
T Consensus 154 L~IAEV~SRf 163 (219)
T PF05148_consen 154 LKIAEVKSRF 163 (219)
T ss_dssp EEEEEEGGG-
T ss_pred EEEEEecccC
Confidence 9999876543
No 95
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.16 E-value=0.0022 Score=61.09 Aligned_cols=127 Identities=13% Similarity=0.125 Sum_probs=65.8
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
.-+|+|+|||+|.-|+.+.+.. +...|+-.|+-.. .-... +........... .+.
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~---------------~~~~v~a~D~s~~-~l~~~------~~n~~~~g~~~~---~~~ 299 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELA---------------PQAQVVALDIDAQ-RLERV------RENLQRLGLKAT---VIV 299 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHc---------------CCCEEEEEeCCHH-HHHHH------HHHHHHcCCCeE---EEE
Confidence 4689999999999998776322 1256777777521 11111 111111111111 233
Q ss_pred ccccc--ccCCCCceeEEEc---ccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411 131 GSFYQ--RLFPSRGINFIHS---SYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG 205 (242)
Q Consensus 131 gSFy~--~l~p~~svdl~~S---s~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG 205 (242)
++..+ ..++++++|.+++ ++...-+.+-|.. -|. ..++- ...+......+|..-.+-|+||
T Consensus 300 ~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~-------~~~---~~~~~----l~~l~~~q~~iL~~a~~~LkpG 365 (427)
T PRK10901 300 GDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDI-------KWL---RRPED----IAALAALQSEILDALWPLLKPG 365 (427)
T ss_pred cCcccchhhcccCCCCEEEECCCCCcccccccCccc-------ccc---CCHHH----HHHHHHHHHHHHHHHHHhcCCC
Confidence 34422 2245678999985 1111111222221 010 01111 1223344556888888899999
Q ss_pred ceEEEEecccC
Q 043411 206 GRMFLTFLGRS 216 (242)
Q Consensus 206 G~lvl~~~g~~ 216 (242)
|+|+.+++.-.
T Consensus 366 G~lvystcs~~ 376 (427)
T PRK10901 366 GTLLYATCSIL 376 (427)
T ss_pred CEEEEEeCCCC
Confidence 99999887543
No 96
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.13 E-value=0.0017 Score=57.27 Aligned_cols=128 Identities=15% Similarity=0.223 Sum_probs=62.5
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|+|||+|..++.+.... |..+++..|.... .-...+. ........+ +..+
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~---------------~~~~v~~iDis~~-~l~~a~~------n~~~~~~~~--i~~~ 163 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKER---------------PDAEVTAVDISPE-ALAVARR------NAKHGLGAR--VEFL 163 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHC---------------CCCEEEEEECCHH-HHHHHHH------HHHhCCCCc--EEEE
Confidence 35789999999999887665322 2467888887521 1111111 010000011 1123
Q ss_pred ccccccccCCCCceeEEEcccce---eecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411 130 LGSFYQRLFPSRGINFIHSSYSV---HWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 130 pgSFy~~l~p~~svdl~~Ss~al---hWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG 206 (242)
.++++.. ++++++|+++|.--. .-...++..+...+-..-... . .....++..|++.-.+-|+|||
T Consensus 164 ~~d~~~~-~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~--g--------~~g~~~~~~~~~~~~~~Lk~gG 232 (275)
T PRK09328 164 QGDWFEP-LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFG--G--------EDGLDFYRRIIEQAPRYLKPGG 232 (275)
T ss_pred EccccCc-CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcC--C--------CCHHHHHHHHHHHHHHhcccCC
Confidence 3455443 346799999983100 000001111100000000000 0 1123456668888888899999
Q ss_pred eEEEEe
Q 043411 207 RMFLTF 212 (242)
Q Consensus 207 ~lvl~~ 212 (242)
++++..
T Consensus 233 ~l~~e~ 238 (275)
T PRK09328 233 WLLLEI 238 (275)
T ss_pred EEEEEE
Confidence 999843
No 97
>PHA03411 putative methyltransferase; Provisional
Probab=97.10 E-value=0.0026 Score=57.63 Aligned_cols=118 Identities=13% Similarity=0.116 Sum_probs=68.8
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||+|..++.+.... +..+|+..|+-. ++-.+.+.. + ++ +..+.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~---------------~~~~V~gVDisp-~al~~Ar~n------~-----~~--v~~v~ 115 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRC---------------KPEKIVCVELNP-EFARIGKRL------L-----PE--AEWIT 115 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhC---------------CCCEEEEEECCH-HHHHHHHHh------C-----cC--CEEEE
Confidence 4689999999998777554110 125777778753 222222211 0 11 11244
Q ss_pred cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHH----HHH--HHHHHHHHHHhhhcc
Q 043411 131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQ----FQR--DFSAFLSLRSEEIVS 204 (242)
Q Consensus 131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q----~~~--D~~~FL~~Ra~EL~p 204 (242)
+++.+ +.+..++|+|+|.-..+++..... .+.|+.+ ..+ .+..||+..+.=|+|
T Consensus 116 ~D~~e-~~~~~kFDlIIsNPPF~~l~~~d~-------------------~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p 175 (279)
T PHA03411 116 SDVFE-FESNEKFDVVISNPPFGKINTTDT-------------------KDVFEYTGGEFEFKVMTLGQKFADVGYFIVP 175 (279)
T ss_pred Cchhh-hcccCCCcEEEEcCCccccCchhh-------------------hhhhhhccCccccccccHHHHHhhhHheecC
Confidence 56643 335678999999877777532111 0111110 001 145688888889999
Q ss_pred CceEEEEecccCC
Q 043411 205 GGRMFLTFLGRSI 217 (242)
Q Consensus 205 GG~lvl~~~g~~~ 217 (242)
+|...+..-|++-
T Consensus 176 ~G~~~~~yss~~~ 188 (279)
T PHA03411 176 TGSAGFAYSGRPY 188 (279)
T ss_pred CceEEEEEecccc
Confidence 9988888666543
No 98
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.09 E-value=0.0019 Score=63.09 Aligned_cols=129 Identities=17% Similarity=0.205 Sum_probs=64.6
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||+|..++.++... |..+++.-|+.. +.-.+.+.- ........ .+..+-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~---------------p~~~v~avDis~-~al~~A~~N------~~~~~l~~-~v~~~~ 195 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL---------------PNANVIATDISL-DAIEVAKSN------AIKYEVTD-RIQIIH 195 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC---------------CCCeEEEEECCH-HHHHHHHHH------HHHcCCcc-ceeeee
Confidence 4689999999999988765322 346788888852 222222211 11111000 122345
Q ss_pred cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHH-HHHHHHHHHHHHHHHhhhccCceEE
Q 043411 131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFW-EQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~-~q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
+++++. ++.+++|+++|.--....+..+....+ + ..-.|. .+-+. ......++.+++.-.+-|+|||+++
T Consensus 196 ~D~~~~-~~~~~fDlIvsNPPYi~~~~~~~l~~~----v--~~~EP~--~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~ 266 (506)
T PRK01544 196 SNWFEN-IEKQKFDFIVSNPPYISHSEKSEMAIE----T--INYEPS--IALFAEEDGLQAYFIIAENAKQFLKPNGKII 266 (506)
T ss_pred cchhhh-CcCCCccEEEECCCCCCchhhhhcCch----h--hccCcH--HHhcCCccHHHHHHHHHHHHHHhccCCCEEE
Confidence 576554 356789999994221111111100000 0 000000 00000 1122345558888788899999998
Q ss_pred EE
Q 043411 210 LT 211 (242)
Q Consensus 210 l~ 211 (242)
+-
T Consensus 267 lE 268 (506)
T PRK01544 267 LE 268 (506)
T ss_pred EE
Confidence 74
No 99
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.09 E-value=0.0046 Score=58.92 Aligned_cols=130 Identities=13% Similarity=0.126 Sum_probs=69.5
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
.-+|+|+|||+|.-|+.+.+.+ +.-+|+-.|.-.+=...+-+. +...... +-+..+.
T Consensus 239 g~~VLDlcag~G~kt~~la~~~---------------~~~~v~a~D~~~~~l~~~~~n-------~~r~g~~-~~v~~~~ 295 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELA---------------PQAQVVALDIHEHRLKRVYEN-------LKRLGLT-IKAETKD 295 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHc---------------CCCeEEEEeCCHHHHHHHHHH-------HHHcCCC-eEEEEec
Confidence 4799999999999999776322 125677777752111111111 1111111 2222233
Q ss_pred ccccccc--CCCCceeEEEc---ccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411 131 GSFYQRL--FPSRGINFIHS---SYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG 205 (242)
Q Consensus 131 gSFy~~l--~p~~svdl~~S---s~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG 205 (242)
++...-. .+.+++|.++. +++..-+.+.|... |. .++..+ .+..+.-..+|..=++-|+||
T Consensus 296 ~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~-------~~--~~~~~~-----~~l~~lQ~~lL~~a~~~Lkpg 361 (426)
T TIGR00563 296 GDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIK-------WL--RKPRDI-----AELAELQSEILDAIWPLLKTG 361 (426)
T ss_pred cccccccccccccccCEEEEcCCCCCCcccccCcchh-------hc--CCHHHH-----HHHHHHHHHHHHHHHHhcCCC
Confidence 3332212 25678999986 23333344444421 10 112222 122223345787778889999
Q ss_pred ceEEEEecccCC
Q 043411 206 GRMFLTFLGRSI 217 (242)
Q Consensus 206 G~lvl~~~g~~~ 217 (242)
|+|+.+++.-..
T Consensus 362 G~lvystcs~~~ 373 (426)
T TIGR00563 362 GTLVYATCSVLP 373 (426)
T ss_pred cEEEEEeCCCCh
Confidence 999999887643
No 100
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.04 E-value=0.0016 Score=58.94 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=17.3
Q ss_pred HHHHHHhhhccCceEEEEecccC
Q 043411 194 FLSLRSEEIVSGGRMFLTFLGRS 216 (242)
Q Consensus 194 FL~~Ra~EL~pGG~lvl~~~g~~ 216 (242)
++..-.+-|+|||+++++.+...
T Consensus 241 ll~~~~~~LkpgG~li~sgi~~~ 263 (288)
T TIGR00406 241 LYPQFSRLVKPGGWLILSGILET 263 (288)
T ss_pred HHHHHHHHcCCCcEEEEEeCcHh
Confidence 55555667799999999877643
No 101
>PTZ00146 fibrillarin; Provisional
Probab=97.00 E-value=0.01 Score=54.27 Aligned_cols=20 Identities=30% Similarity=0.267 Sum_probs=17.1
Q ss_pred ccEEeeecCCCCcchHHHHH
Q 043411 51 CFNVADLGCSSGPNTLLVVS 70 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~ 70 (242)
-.+|+|+|||+|..|..+..
T Consensus 133 G~~VLDLGaG~G~~t~~lAd 152 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSD 152 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHH
Confidence 46999999999999887763
No 102
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.88 E-value=0.0054 Score=58.71 Aligned_cols=131 Identities=12% Similarity=0.105 Sum_probs=71.6
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
.-+|+|+|||+|.-|+.+.+.. . +..+|+-.|+-.+=-..+ ++.+......++ ..+-
T Consensus 238 g~~VLD~cagpGgkt~~la~~~-------------~-~~g~V~a~Dis~~rl~~~-------~~n~~r~g~~~v--~~~~ 294 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELM-------------K-DQGKILAVDISREKIQLV-------EKHAKRLKLSSI--EIKI 294 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHc-------------C-CCCEEEEEECCHHHHHHH-------HHHHHHcCCCeE--EEEE
Confidence 4689999999999999876322 0 236888888863111111 111111111121 1222
Q ss_pred ccccccc-CCCCceeEEEc---ccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411 131 GSFYQRL-FPSRGINFIHS---SYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 131 gSFy~~l-~p~~svdl~~S---s~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG 206 (242)
++...-. +.++++|.|+. ++.+..+.+.|.... .. +++ -..+..+.-..+|..-++-|+|||
T Consensus 295 ~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~---------~~-~~~----~~~~l~~~Q~~iL~~a~~~LkpGG 360 (431)
T PRK14903 295 ADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLR---------RV-NKE----DFKKLSEIQLRIVSQAWKLLEKGG 360 (431)
T ss_pred CchhhhhhhhhccCCEEEECCCCCCCccccCChHHHH---------hC-CHH----HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 2321111 23567899886 234444444443211 00 111 123334455668988899999999
Q ss_pred eEEEEecccCCC
Q 043411 207 RMFLTFLGRSIA 218 (242)
Q Consensus 207 ~lvl~~~g~~~~ 218 (242)
+|+.+++....+
T Consensus 361 ~LvYsTCs~~~e 372 (431)
T PRK14903 361 ILLYSTCTVTKE 372 (431)
T ss_pred EEEEEECCCChh
Confidence 999999986543
No 103
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=96.87 E-value=0.0098 Score=51.86 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHH
Q 043411 32 AWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVV 69 (242)
Q Consensus 32 ~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~ 69 (242)
..|.|.+.+..+. .+...||+|.|||.|.|++.+.
T Consensus 22 p~~~L~~~~~~~~---~~~~~rvL~~gCG~G~da~~LA 56 (218)
T PRK13255 22 VNPLLQKYWPALA---LPAGSRVLVPLCGKSLDMLWLA 56 (218)
T ss_pred CCHHHHHHHHhhC---CCCCCeEEEeCCCChHhHHHHH
Confidence 4555666554332 1334799999999999999886
No 104
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=96.87 E-value=0.0044 Score=55.71 Aligned_cols=121 Identities=12% Similarity=0.178 Sum_probs=73.8
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
+..+++|.+||||-.|+.++..+-. +. ++. +-+|+.. |+|.---....-+..-...+..++ +.-+
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s----~~---~~~--~~~V~v~-----Dinp~mL~vgkqRa~~~~l~~~~~-~~w~ 164 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKS----QF---GDR--ESKVTVL-----DINPHMLAVGKQRAKKRPLKASSR-VEWV 164 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhcc----cc---CCC--CceEEEE-----eCCHHHHHHHHHHHhhcCCCcCCc-eEEE
Confidence 4799999999999999999865522 11 112 2344444 555432222221110000111111 2234
Q ss_pred ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411 130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
.|+--.--||+++.|...+++.+--..+++.. ..|||+ =|||||++.
T Consensus 165 ~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~-----------------l~EAYR----------------VLKpGGrf~ 211 (296)
T KOG1540|consen 165 EGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKA-----------------LREAYR----------------VLKPGGRFS 211 (296)
T ss_pred eCCcccCCCCCCcceeEEEecceecCCCHHHH-----------------HHHHHH----------------hcCCCcEEE
Confidence 55665666899999999999988765554442 345555 359999999
Q ss_pred EEecccCCC
Q 043411 210 LTFLGRSIA 218 (242)
Q Consensus 210 l~~~g~~~~ 218 (242)
+..|..-+.
T Consensus 212 cLeFskv~~ 220 (296)
T KOG1540|consen 212 CLEFSKVEN 220 (296)
T ss_pred EEEcccccc
Confidence 999988774
No 105
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.86 E-value=0.0021 Score=49.17 Aligned_cols=112 Identities=18% Similarity=0.248 Sum_probs=59.6
Q ss_pred cEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCC-CCceeeccc
Q 043411 52 FNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKF-GPCFIAGML 130 (242)
Q Consensus 52 ~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~-~~~f~~~vp 130 (242)
.+|+|+|||+|..++.+.... ..+++..|+- ...-.+.. ..+..... .+ +.-+-
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~----------------~~~~~gvdi~-----~~~~~~a~--~~~~~~~~~~~--~~~~~ 56 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG----------------AARVTGVDID-----PEAVELAR--RNLPRNGLDDR--VEVIV 56 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC----------------TCEEEEEESS-----HHHHHHHH--HHCHHCTTTTT--EEEEE
T ss_pred CEEEEcCcchHHHHHHHHHHC----------------CCeEEEEEEC-----HHHHHHHH--HHHHHccCCce--EEEEE
Confidence 589999999998877665221 2566666664 11111111 00111100 11 11233
Q ss_pred ccccccc--CCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411 131 GSFYQRL--FPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM 208 (242)
Q Consensus 131 gSFy~~l--~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l 208 (242)
+++..-. ++.+++|++++. |+-....+ . .+.-.++...|++.-.+-|+|||.+
T Consensus 57 ~D~~~~~~~~~~~~~D~Iv~n---------pP~~~~~~--------~--------~~~~~~~~~~~~~~~~~~L~~gG~~ 111 (117)
T PF13659_consen 57 GDARDLPEPLPDGKFDLIVTN---------PPYGPRSG--------D--------KAALRRLYSRFLEAAARLLKPGGVL 111 (117)
T ss_dssp SHHHHHHHTCTTT-EEEEEE-----------STTSBTT--------------------GGCHHHHHHHHHHHHEEEEEEE
T ss_pred CchhhchhhccCceeEEEEEC---------CCCccccc--------c--------chhhHHHHHHHHHHHHHHcCCCeEE
Confidence 3554433 788999999992 22111000 0 0000115566899999999999999
Q ss_pred EEEec
Q 043411 209 FLTFL 213 (242)
Q Consensus 209 vl~~~ 213 (242)
++.+.
T Consensus 112 ~~~~~ 116 (117)
T PF13659_consen 112 VFITP 116 (117)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 98764
No 106
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.83 E-value=0.0012 Score=61.20 Aligned_cols=49 Identities=18% Similarity=0.307 Sum_probs=35.9
Q ss_pred cCCC--CceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecc
Q 043411 137 LFPS--RGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLG 214 (242)
Q Consensus 137 l~p~--~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g 214 (242)
.+++ ..+|++-+-+|||..=.-. +-.+.||+.-++-|+|||+++.+++-
T Consensus 138 ~~~~~~~~FDvVScQFalHY~Fese-----------------------------~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 138 KLPPRSRKFDVVSCQFALHYAFESE-----------------------------EKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp TSSSTTS-EEEEEEES-GGGGGSSH-----------------------------HHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred hccccCCCcceeehHHHHHHhcCCH-----------------------------HHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 4444 4999999999999843311 23456999999999999999999984
No 107
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.83 E-value=0.0022 Score=57.79 Aligned_cols=54 Identities=7% Similarity=0.172 Sum_probs=40.4
Q ss_pred cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411 129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM 208 (242)
Q Consensus 129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l 208 (242)
++-++-+--++++|+|+++.+-||+= .||..|+.--.+=|+|||.|
T Consensus 215 ~~cDm~~vPl~d~svDvaV~CLSLMg----------------------------------tn~~df~kEa~RiLk~gG~l 260 (325)
T KOG3045|consen 215 IACDMRNVPLEDESVDVAVFCLSLMG----------------------------------TNLADFIKEANRILKPGGLL 260 (325)
T ss_pred eeccccCCcCccCcccEEEeeHhhhc----------------------------------ccHHHHHHHHHHHhccCceE
Confidence 34455555668999999988655542 36667888888889999999
Q ss_pred EEEecccC
Q 043411 209 FLTFLGRS 216 (242)
Q Consensus 209 vl~~~g~~ 216 (242)
.+...-..
T Consensus 261 ~IAEv~SR 268 (325)
T KOG3045|consen 261 YIAEVKSR 268 (325)
T ss_pred EEEehhhh
Confidence 99887543
No 108
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=96.81 E-value=0.013 Score=50.13 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=27.3
Q ss_pred CCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecccCC
Q 043411 166 KRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSI 217 (242)
Q Consensus 166 kg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~ 217 (242)
.+.|+|.++.. +...|+...+-|+|||+||++..-..+
T Consensus 103 ~daiFIGGg~~--------------i~~ile~~~~~l~~ggrlV~naitlE~ 140 (187)
T COG2242 103 PDAIFIGGGGN--------------IEEILEAAWERLKPGGRLVANAITLET 140 (187)
T ss_pred CCEEEECCCCC--------------HHHHHHHHHHHcCcCCeEEEEeecHHH
Confidence 35677777633 233788888889999999998775543
No 109
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.81 E-value=0.0076 Score=57.78 Aligned_cols=128 Identities=13% Similarity=0.071 Sum_probs=69.2
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
.-+|+|+|||+|..|+.+.+.+ . ..-+|+-.|+-..=...+-+. +......+ +..+-
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~-~-------------~~~~V~avD~s~~~l~~~~~~-------~~~~g~~~--v~~~~ 307 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELM-Q-------------NRGQITAVDRYPQKLEKIRSH-------ASALGITI--IETIE 307 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHh-C-------------CCcEEEEEECCHHHHHHHHHH-------HHHhCCCe--EEEEe
Confidence 4689999999999998776332 1 125788888763211111111 11111112 22233
Q ss_pred cccccccCCCCceeEEEcccceeecccCCCcccC----CCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411 131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLEN----NKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~----nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG 206 (242)
++. ..+.|++++|.++. ++|+.-.. +.+.-|. .++ +.. ++..+.-..+|..-++-|+|||
T Consensus 308 ~Da-~~~~~~~~fD~Vl~--------D~Pcsg~g~~~r~p~~~~~--~~~-~~~----~~l~~~q~~iL~~a~~~lkpgG 371 (445)
T PRK14904 308 GDA-RSFSPEEQPDAILL--------DAPCTGTGVLGRRAELRWK--LTP-EKL----AELVGLQAELLDHAASLLKPGG 371 (445)
T ss_pred Ccc-cccccCCCCCEEEE--------cCCCCCcchhhcCcchhhc--CCH-HHH----HHHHHHHHHHHHHHHHhcCCCc
Confidence 444 33446778999984 34442110 0000010 111 111 2233345568988899999999
Q ss_pred eEEEEecccCC
Q 043411 207 RMFLTFLGRSI 217 (242)
Q Consensus 207 ~lvl~~~g~~~ 217 (242)
+|+.+++....
T Consensus 372 ~lvystcs~~~ 382 (445)
T PRK14904 372 VLVYATCSIEP 382 (445)
T ss_pred EEEEEeCCCCh
Confidence 99999987653
No 110
>PRK14967 putative methyltransferase; Provisional
Probab=96.78 E-value=0.0051 Score=53.23 Aligned_cols=125 Identities=11% Similarity=0.023 Sum_probs=62.8
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||+|..++.+.. . ..-+++..|+.. ..-...+ ........ + +..+-
T Consensus 37 ~~~vLDlGcG~G~~~~~la~--------~--------~~~~v~~vD~s~-~~l~~a~------~n~~~~~~-~--~~~~~ 90 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAA--------A--------GAGSVTAVDISR-RAVRSAR------LNALLAGV-D--VDVRR 90 (223)
T ss_pred CCeEEEecCCHHHHHHHHHH--------c--------CCCeEEEEECCH-HHHHHHH------HHHHHhCC-e--eEEEE
Confidence 46999999999998776542 1 112556666642 1111111 11111111 1 22344
Q ss_pred cccccccCCCCceeEEEcccceeecccCCCcccC-CCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411 131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLEN-NKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~-nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
+++.+ .++.+++|++++.--.+.-+ +....+ +....|..+. -...++..|++.-.+-|+|||+++
T Consensus 91 ~d~~~-~~~~~~fD~Vi~npPy~~~~--~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~a~~~Lk~gG~l~ 156 (223)
T PRK14967 91 GDWAR-AVEFRPFDVVVSNPPYVPAP--PDAPPSRGPARAWDAGP-----------DGRAVLDRLCDAAPALLAPGGSLL 156 (223)
T ss_pred Cchhh-hccCCCeeEEEECCCCCCCC--cccccccChhHhhhCCC-----------cHHHHHHHHHHHHHHhcCCCcEEE
Confidence 57755 45778999999843211111 100000 0000111010 012345668887788899999999
Q ss_pred EEeccc
Q 043411 210 LTFLGR 215 (242)
Q Consensus 210 l~~~g~ 215 (242)
+..-..
T Consensus 157 ~~~~~~ 162 (223)
T PRK14967 157 LVQSEL 162 (223)
T ss_pred EEEecc
Confidence 865443
No 111
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=96.77 E-value=0.0077 Score=55.34 Aligned_cols=111 Identities=21% Similarity=0.252 Sum_probs=69.2
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
--+|+|+||+.|.-++.+. ++ | + -.|+--| |+=.|..-|+.+..+.. ....+|.. |
T Consensus 116 gk~VLDIGC~nGY~~frM~--------~~----G---A-~~ViGiD-P~~lf~~QF~~i~~~lg-----~~~~~~~l--p 171 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRML--------GR----G---A-KSVIGID-PSPLFYLQFEAIKHFLG-----QDPPVFEL--P 171 (315)
T ss_pred CCEEEEecCCCcHHHHHHh--------hc----C---C-CEEEEEC-CChHHHHHHHHHHHHhC-----CCccEEEc--C
Confidence 4799999999999988775 11 1 2 3344444 44467777776654321 11234433 3
Q ss_pred cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411 131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
-.. +.|-..+++|+++|.- |.++..+|-. .|..-..-|+|||.|++
T Consensus 172 lgv-E~Lp~~~~FDtVF~MG------------------VLYHrr~Pl~---------------~L~~Lk~~L~~gGeLvL 217 (315)
T PF08003_consen 172 LGV-EDLPNLGAFDTVFSMG------------------VLYHRRSPLD---------------HLKQLKDSLRPGGELVL 217 (315)
T ss_pred cch-hhccccCCcCEEEEee------------------ehhccCCHHH---------------HHHHHHHhhCCCCEEEE
Confidence 333 5555578999999932 3334444433 56666778899999999
Q ss_pred EecccCCCC
Q 043411 211 TFLGRSIAD 219 (242)
Q Consensus 211 ~~~g~~~~~ 219 (242)
=++..+.++
T Consensus 218 ETlvi~g~~ 226 (315)
T PF08003_consen 218 ETLVIDGDE 226 (315)
T ss_pred EEeeecCCC
Confidence 988665543
No 112
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.74 E-value=0.014 Score=55.68 Aligned_cols=128 Identities=10% Similarity=0.052 Sum_probs=66.8
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
.-+|+|+|||+|..|+.+.+.+ . +.-.|+-.|.-.. . .+.+ +..+......++ ..+.
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~-~-------------~~g~v~a~D~~~~-r---l~~~---~~n~~r~g~~~v--~~~~ 309 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELM-G-------------DQGEIWAVDRSAS-R---LKKL---QENAQRLGLKSI--KILA 309 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHh-C-------------CCceEEEEcCCHH-H---HHHH---HHHHHHcCCCeE--EEEe
Confidence 4789999999999998876332 1 1356777777421 1 1111 111111111221 2223
Q ss_pred ccccccc----CCCCceeEEEcccceeecccCCCcccC----CCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043411 131 GSFYQRL----FPSRGINFIHSSYSVHWLSKVPENLEN----NKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEI 202 (242)
Q Consensus 131 gSFy~~l----~p~~svdl~~Ss~alhWLs~~P~~~~~----nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL 202 (242)
++.-.-. ++++++|.++. +.|++-.. +.+.-| ..++.. .+...+.-..+|..-++-|
T Consensus 310 ~D~~~~~~~~~~~~~~fD~Vl~--------DaPCSg~G~~~r~p~~~~--~~~~~~-----~~~l~~~Q~~iL~~a~~~l 374 (434)
T PRK14901 310 ADSRNLLELKPQWRGYFDRILL--------DAPCSGLGTLHRHPDARW--RQTPEK-----IQELAPLQAELLESLAPLL 374 (434)
T ss_pred CChhhcccccccccccCCEEEE--------eCCCCcccccccCcchhh--hCCHHH-----HHHHHHHHHHHHHHHHHhc
Confidence 3432111 34678898886 55653211 000000 001111 1223334456888888999
Q ss_pred ccCceEEEEecccC
Q 043411 203 VSGGRMFLTFLGRS 216 (242)
Q Consensus 203 ~pGG~lvl~~~g~~ 216 (242)
+|||+|+.+++...
T Consensus 375 kpgG~lvystcsi~ 388 (434)
T PRK14901 375 KPGGTLVYATCTLH 388 (434)
T ss_pred CCCCEEEEEeCCCC
Confidence 99999999887653
No 113
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.69 E-value=0.0032 Score=61.50 Aligned_cols=138 Identities=11% Similarity=0.152 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchH
Q 043411 24 IQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFN 103 (242)
Q Consensus 24 ~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn 103 (242)
.|++.++...|.+.-....+.. .....++|+|||.|..++.+... .|+..++--|.-.+
T Consensus 324 ~q~~~~e~~~p~~~i~~eklf~---~~~p~~lEIG~G~G~~~~~~A~~---------------~p~~~~iGiE~~~~--- 382 (506)
T PRK01544 324 VQQNLLDNELPKYLFSKEKLVN---EKRKVFLEIGFGMGEHFINQAKM---------------NPDALFIGVEVYLN--- 382 (506)
T ss_pred HHHHHHHhhhhhhCCCHHHhCC---CCCceEEEECCCchHHHHHHHHh---------------CCCCCEEEEEeeHH---
Confidence 7888888888876644333321 34689999999999887766521 24455555554422
Q ss_pred HHhhcCchhHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHH
Q 043411 104 SIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAF 183 (242)
Q Consensus 104 ~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay 183 (242)
.+-+.+.. ....+..++.+..-...+....||++|||-++-.+.=-| |..- -.|.++..
T Consensus 383 ~~~~~~~~----~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPW----pKkr-h~krRl~~------------ 441 (506)
T PRK01544 383 GVANVLKL----AGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFPDPW----IKNK-QKKKRIFN------------ 441 (506)
T ss_pred HHHHHHHH----HHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECCCCC----CCCC-CccccccC------------
Confidence 22222211 111233466553323334577899999999999887777 3310 01333321
Q ss_pred HHHHHHHHHHHHHHHHhhhccCceEEEE
Q 043411 184 WEQFQRDFSAFLSLRSEEIVSGGRMFLT 211 (242)
Q Consensus 184 ~~q~~~D~~~FL~~Ra~EL~pGG~lvl~ 211 (242)
..||+.-+.-|+|||.+.+.
T Consensus 442 --------~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 442 --------KERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred --------HHHHHHHHHhcCCCCEEEEE
Confidence 11788888888999999874
No 114
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=96.68 E-value=0.042 Score=50.03 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhhccCceEEEEecccCCC
Q 043411 191 FSAFLSLRSEEIVSGGRMFLTFLGRSIA 218 (242)
Q Consensus 191 ~~~FL~~Ra~EL~pGG~lvl~~~g~~~~ 218 (242)
+..|+.--.+-|+|||.+.+.+-+++..
T Consensus 264 ~~~~~~~a~R~Lq~gg~~~le~~~~~~~ 291 (328)
T KOG2904|consen 264 LVHYWLLATRMLQPGGFEQLELVERKEH 291 (328)
T ss_pred HHHHHHhhHhhcccCCeEEEEecccccC
Confidence 4457778888999999999999988543
No 115
>PRK14968 putative methyltransferase; Provisional
Probab=96.67 E-value=0.014 Score=48.14 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhhccCceEEEEec
Q 043411 190 DFSAFLSLRSEEIVSGGRMFLTFL 213 (242)
Q Consensus 190 D~~~FL~~Ra~EL~pGG~lvl~~~ 213 (242)
....|++.-.+-|+|||.+++...
T Consensus 126 ~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 126 VIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEEc
Confidence 356688888899999999988764
No 116
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.65 E-value=0.0026 Score=59.26 Aligned_cols=117 Identities=17% Similarity=0.224 Sum_probs=71.0
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
.--.|+|.|||+|..|+..++.=- -.||-- +-+. ..+....+...+--.-.+..+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA----------------~~vYAv-----EAS~----MAqyA~~Lv~~N~~~~rItVI 231 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGA----------------KKVYAV-----EASE----MAQYARKLVASNNLADRITVI 231 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCc----------------ceEEEE-----ehhH----HHHHHHHHHhcCCccceEEEc
Confidence 346799999999999987763221 111111 1111 111112222211123456789
Q ss_pred ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411 130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
||-. +.+-.|+.+|+++| -|- |.+.+ -.+=+..+|.+| +-|+|.|.|+
T Consensus 232 ~GKi-EdieLPEk~DviIS---------EPM------G~mL~---------------NERMLEsYl~Ar-k~l~P~GkMf 279 (517)
T KOG1500|consen 232 PGKI-EDIELPEKVDVIIS---------EPM------GYMLV---------------NERMLESYLHAR-KWLKPNGKMF 279 (517)
T ss_pred cCcc-ccccCchhccEEEe---------ccc------hhhhh---------------hHHHHHHHHHHH-hhcCCCCccc
Confidence 9988 77888889999999 233 21111 125677899999 9999999996
Q ss_pred EEecccCCCCCCCCh
Q 043411 210 LTFLGRSIADPSSKD 224 (242)
Q Consensus 210 l~~~g~~~~~~~~~~ 224 (242)
= ++|+-...|.+.+
T Consensus 280 P-T~gdiHlAPFsDE 293 (517)
T KOG1500|consen 280 P-TVGDIHLAPFSDE 293 (517)
T ss_pred C-cccceeecccchH
Confidence 5 4566666666553
No 117
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.64 E-value=0.0068 Score=51.48 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=16.9
Q ss_pred CccEEeeecCCCCcchHHHH
Q 043411 50 GCFNVADLGCSSGPNTLLVV 69 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~ 69 (242)
...+|+|+|||+|..++.+.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a 59 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEAS 59 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHH
Confidence 45799999999998888665
No 118
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.64 E-value=0.019 Score=54.92 Aligned_cols=127 Identities=16% Similarity=0.102 Sum_probs=65.7
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
.-+|+|+|||+|..|+.+.+.. . +.-+|+-.|+-.+= -...+ ..+......+ +..+-
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~-------------~-~~~~v~avDi~~~~-l~~~~------~n~~~~g~~~--v~~~~ 307 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELL-------------K-NTGKVVALDIHEHK-LKLIE------ENAKRLGLTN--IETKA 307 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHh-------------C-CCCEEEEEeCCHHH-HHHHH------HHHHHcCCCe--EEEEe
Confidence 4689999999999999776332 0 23577777875311 11111 1111111122 22334
Q ss_pred cccccc--cCCCCceeEEEc---ccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411 131 GSFYQR--LFPSRGINFIHS---SYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG 205 (242)
Q Consensus 131 gSFy~~--l~p~~svdl~~S---s~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG 205 (242)
+++.+- .++ +++|++++ .+....+.+-|... |. .+ +... +...+--..+|+.-.+-|+||
T Consensus 308 ~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~-------~~--~~-~~~~----~~l~~~q~~iL~~a~~~LkpG 372 (444)
T PRK14902 308 LDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIK-------YN--KT-KEDI----ESLQEIQLEILESVAQYLKKG 372 (444)
T ss_pred CCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchh-------hc--CC-HHHH----HHHHHHHHHHHHHHHHHcCCC
Confidence 455321 123 78999986 22233333333311 10 01 1111 112222345788888889999
Q ss_pred ceEEEEeccc
Q 043411 206 GRMFLTFLGR 215 (242)
Q Consensus 206 G~lvl~~~g~ 215 (242)
|+|+.+++..
T Consensus 373 G~lvystcs~ 382 (444)
T PRK14902 373 GILVYSTCTI 382 (444)
T ss_pred CEEEEEcCCC
Confidence 9999877654
No 119
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.015 Score=52.56 Aligned_cols=121 Identities=15% Similarity=0.223 Sum_probs=63.9
Q ss_pred EEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccc
Q 043411 53 NVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGS 132 (242)
Q Consensus 53 ~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgS 132 (242)
+|+|+|||||.-++.+.... |...|+..|+.. |--.+-+. -...++..+ +..... +
T Consensus 113 ~ilDlGTGSG~iai~la~~~---------------~~~~V~a~Dis~-~Al~~A~~------Na~~~~l~~-~~~~~~-d 168 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG---------------PDAEVIAVDISP-DALALARE------NAERNGLVR-VLVVQS-D 168 (280)
T ss_pred cEEEecCChHHHHHHHHhhC---------------cCCeEEEEECCH-HHHHHHHH------HHHHcCCcc-EEEEee-e
Confidence 89999999999988776332 457899999862 11111110 011111112 111222 6
Q ss_pred cccccCCCCceeEEEcccceeecccCCCcccCCCCceEEc---CCCChHHHHHHHH-HHHHHHHHHHHHHHhhhccCceE
Q 043411 133 FYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYIT---KSSPPSVCQAFWE-QFQRDFSAFLSLRSEEIVSGGRM 208 (242)
Q Consensus 133 Fy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~---~~s~~~v~~ay~~-q~~~D~~~FL~~Ra~EL~pGG~l 208 (242)
+++.+-. .+|+++| .|+-+..+ ...... .-.|.. ..+.. -.....++|+..=..-|+|||.+
T Consensus 169 lf~~~~~--~fDlIVs---------NPPYip~~-~~~~~~~~~~~EP~~--Al~~g~dGl~~~~~i~~~a~~~l~~~g~l 234 (280)
T COG2890 169 LFEPLRG--KFDLIVS---------NPPYIPAE-DPELLPEVVRYEPLL--ALVGGGDGLEVYRRILGEAPDILKPGGVL 234 (280)
T ss_pred cccccCC--ceeEEEe---------CCCCCCCc-ccccChhhhccCHHH--HHccCccHHHHHHHHHHhhHHHcCCCcEE
Confidence 6666665 8999999 56655432 000000 000100 01110 12234455777777788998888
Q ss_pred EEE
Q 043411 209 FLT 211 (242)
Q Consensus 209 vl~ 211 (242)
++-
T Consensus 235 ~le 237 (280)
T COG2890 235 ILE 237 (280)
T ss_pred EEE
Confidence 773
No 120
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.53 E-value=0.026 Score=52.22 Aligned_cols=137 Identities=18% Similarity=0.292 Sum_probs=72.6
Q ss_pred HHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhH
Q 043411 34 PFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFY 113 (242)
Q Consensus 34 ~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~ 113 (242)
.+|++...++... .+...+|+|+|||+|.-|..+++.+ .+. . ..+..+=-|+.. ++ | ....
T Consensus 61 ~iL~~~~~~Ia~~-i~~~~~lIELGsG~~~Kt~~LL~aL----~~~------~-~~~~Y~plDIS~-~~--L----~~a~ 121 (319)
T TIGR03439 61 EILKKHSSDIAAS-IPSGSMLVELGSGNLRKVGILLEAL----ERQ------K-KSVDYYALDVSR-SE--L----QRTL 121 (319)
T ss_pred HHHHHHHHHHHHh-cCCCCEEEEECCCchHHHHHHHHHH----Hhc------C-CCceEEEEECCH-HH--H----HHHH
Confidence 3444444444321 2445689999999999999888655 221 1 136777777763 11 1 1111
Q ss_pred HhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCC-----CChHHHHHHHHHHH
Q 043411 114 ERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKS-----SPPSVCQAFWEQFQ 188 (242)
Q Consensus 114 ~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~-----s~~~v~~ay~~q~~ 188 (242)
..+.....+.+=+.++-|+|. ..++||.+ |. ...++.-++.-++ .+++
T Consensus 122 ~~L~~~~~p~l~v~~l~gdy~---------------~~l~~l~~-~~-~~~~~r~~~flGSsiGNf~~~e---------- 174 (319)
T TIGR03439 122 AELPLGNFSHVRCAGLLGTYD---------------DGLAWLKR-PE-NRSRPTTILWLGSSIGNFSRPE---------- 174 (319)
T ss_pred HhhhhccCCCeEEEEEEecHH---------------HHHhhccc-cc-ccCCccEEEEeCccccCCCHHH----------
Confidence 122212335577778888884 33444432 00 0001111222221 2222
Q ss_pred HHHHHHHHHHHh-hhccCceEEEEecccCCC
Q 043411 189 RDFSAFLSLRSE-EIVSGGRMFLTFLGRSIA 218 (242)
Q Consensus 189 ~D~~~FL~~Ra~-EL~pGG~lvl~~~g~~~~ 218 (242)
-..||+.-++ -|.|||.|++++=+..+.
T Consensus 175 --a~~fL~~~~~~~l~~~d~lLiG~D~~k~~ 203 (319)
T TIGR03439 175 --AAAFLAGFLATALSPSDSFLIGLDGCKDP 203 (319)
T ss_pred --HHHHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 2237766666 889999999987555443
No 121
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=96.47 E-value=0.023 Score=50.44 Aligned_cols=22 Identities=9% Similarity=0.250 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhhccCceEEEEe
Q 043411 191 FSAFLSLRSEEIVSGGRMFLTF 212 (242)
Q Consensus 191 ~~~FL~~Ra~EL~pGG~lvl~~ 212 (242)
++.++..=.+-|+|||++++..
T Consensus 195 ~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 195 LRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred HHHHHHHHHHhcCCCCEEEEEE
Confidence 5567877778899999999864
No 122
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=96.45 E-value=0.027 Score=49.38 Aligned_cols=111 Identities=16% Similarity=0.180 Sum_probs=59.9
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCC--ceee
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGP--CFIA 127 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~--~f~~ 127 (242)
...-++++|||+|+|=-.. ...|.-.|++-|=- .-|..... ++....++.+ .|+.
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy----------------~~~p~~svt~lDpn-----~~mee~~~--ks~~E~k~~~~~~fvv 132 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFY----------------PWKPINSVTCLDPN-----EKMEEIAD--KSAAEKKPLQVERFVV 132 (252)
T ss_pred CccceEEecccCCCCcccc----------------cCCCCceEEEeCCc-----HHHHHHHH--HHHhhccCcceEEEEe
Confidence 3577899999999993211 01133555555533 12222111 1111122222 3666
Q ss_pred ccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411 128 GMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR 207 (242)
Q Consensus 128 ~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~ 207 (242)
|-+.+. -|| ++.|+|.++...+|-= -.++ .+..+..++. |+|||+
T Consensus 133 a~ge~l-~~l-~d~s~DtVV~TlvLCS------------------ve~~--------~k~L~e~~rl-------LRpgG~ 177 (252)
T KOG4300|consen 133 ADGENL-PQL-ADGSYDTVVCTLVLCS------------------VEDP--------VKQLNEVRRL-------LRPGGR 177 (252)
T ss_pred echhcC-ccc-ccCCeeeEEEEEEEec------------------cCCH--------HHHHHHHHHh-------cCCCcE
Confidence 655444 222 9999999999555432 1111 1222333334 599999
Q ss_pred EEEEecccCCC
Q 043411 208 MFLTFLGRSIA 218 (242)
Q Consensus 208 lvl~~~g~~~~ 218 (242)
+++..=++..-
T Consensus 178 iifiEHva~~y 188 (252)
T KOG4300|consen 178 IIFIEHVAGEY 188 (252)
T ss_pred EEEEecccccc
Confidence 99988776553
No 123
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=96.45 E-value=0.0025 Score=54.65 Aligned_cols=113 Identities=18% Similarity=0.350 Sum_probs=63.3
Q ss_pred cEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec-cc
Q 043411 52 FNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG-ML 130 (242)
Q Consensus 52 ~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~-vp 130 (242)
..++|+|||.|...+.+.. . .|+..++--|.-.+=.....+.+ ......|+.+.- -.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~--------~-------~Pd~n~iGiE~~~~~v~~a~~~~-------~~~~l~Nv~~~~~da 76 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAK--------R-------NPDINFIGIEIRKKRVAKALRKA-------EKRGLKNVRFLRGDA 76 (195)
T ss_dssp EEEEEET-TTSHHHHHHHH--------H-------STTSEEEEEES-HHHHHHHHHHH-------HHHTTSSEEEEES-C
T ss_pred CeEEEecCCCCHHHHHHHH--------H-------CCCCCEEEEecchHHHHHHHHHH-------HhhcccceEEEEccH
Confidence 3999999999988665541 1 25677776666532222221111 112335655543 34
Q ss_pred cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411 131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
..+...+++++|||-++=.+-=-|-.+-= .|.++.- + .||..-++-|+|||.+.+
T Consensus 77 ~~~l~~~~~~~~v~~i~i~FPDPWpK~rH-----~krRl~~-----~---------------~fl~~~~~~L~~gG~l~~ 131 (195)
T PF02390_consen 77 RELLRRLFPPGSVDRIYINFPDPWPKKRH-----HKRRLVN-----P---------------EFLELLARVLKPGGELYF 131 (195)
T ss_dssp TTHHHHHSTTTSEEEEEEES-----SGGG-----GGGSTTS-----H---------------HHHHHHHHHEEEEEEEEE
T ss_pred HHHHhhcccCCchheEEEeCCCCCcccch-----hhhhcCC-----c---------------hHHHHHHHHcCCCCEEEE
Confidence 45578899999999998866666622210 1222211 1 188888888999999877
Q ss_pred E
Q 043411 211 T 211 (242)
Q Consensus 211 ~ 211 (242)
.
T Consensus 132 ~ 132 (195)
T PF02390_consen 132 A 132 (195)
T ss_dssp E
T ss_pred E
Confidence 4
No 124
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.45 E-value=0.0034 Score=51.78 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=41.0
Q ss_pred cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411 131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
++..+--++++++|++++++++||+.+.. .+|+.-.+-|+|||.+++
T Consensus 33 ~d~~~lp~~~~~fD~v~~~~~l~~~~d~~---------------------------------~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 33 GDAIDLPFDDCEFDAVTMGYGLRNVVDRL---------------------------------RAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred echhhCCCCCCCeeEEEecchhhcCCCHH---------------------------------HHHHHHHHHcCcCeEEEE
Confidence 45544446788999999999999974322 267777777899999999
Q ss_pred EecccCC
Q 043411 211 TFLGRSI 217 (242)
Q Consensus 211 ~~~g~~~ 217 (242)
.-++..+
T Consensus 80 ~d~~~~~ 86 (160)
T PLN02232 80 LDFNKSN 86 (160)
T ss_pred EECCCCC
Confidence 9887654
No 125
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.35 E-value=0.015 Score=51.39 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=16.4
Q ss_pred HHHHHHhhhccCceEEEEeccc
Q 043411 194 FLSLRSEEIVSGGRMFLTFLGR 215 (242)
Q Consensus 194 FL~~Ra~EL~pGG~lvl~~~g~ 215 (242)
++..-.+-|+|||+++++.+..
T Consensus 195 l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 195 LAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred HHHHHHHhcCCCcEEEEEECcH
Confidence 4555556679999999986654
No 126
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=96.31 E-value=0.0048 Score=57.38 Aligned_cols=105 Identities=19% Similarity=0.255 Sum_probs=65.4
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
+.-+|+|.|||+|..|+..++.= . ..+-.+ |++.+...-. .+...+.-..-+..+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-------------A-~~V~aV-------e~S~ia~~a~----~iv~~N~~~~ii~vi 114 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-------------A-RKVYAV-------EASSIADFAR----KIVKDNGLEDVITVI 114 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-------------c-ceEEEE-------echHHHHHHH----HHHHhcCccceEEEe
Confidence 46799999999999988765221 0 113333 5555543221 111111112234456
Q ss_pred ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411 130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
.|.--+-.+|...||+|+|=|-=.|| -+..=+...|-+|-+-|+|||.++
T Consensus 115 ~gkvEdi~LP~eKVDiIvSEWMGy~L------------------------------l~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 115 KGKVEDIELPVEKVDIIVSEWMGYFL------------------------------LYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred ecceEEEecCccceeEEeehhhhHHH------------------------------HHhhhhhhhhhhhhhccCCCceEc
Confidence 66776667788999999995444443 233445568999999999999986
No 127
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=96.31 E-value=0.015 Score=48.72 Aligned_cols=124 Identities=13% Similarity=0.109 Sum_probs=59.5
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhc-CchhHHhhhhcCCCCceeec
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFES-LPDFYERIKKDKFGPCFIAG 128 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~-l~~~~~~l~~~~~~~~f~~~ 128 (242)
...+|+|+|||+|--++.+.... ..-.|+++|++ +...+.+. +..... ....++-+..
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~---------------~~~~Vv~TD~~--~~l~~l~~Ni~~N~~----~~~~~v~v~~ 103 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLF---------------GAARVVLTDYN--EVLELLRRNIELNGS----LLDGRVSVRP 103 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT----------------T-SEEEEEE-S---HHHHHHHHHHTT------------EEEE
T ss_pred CCceEEEECCccchhHHHHHhcc---------------CCceEEEeccc--hhhHHHHHHHHhccc----cccccccCcE
Confidence 46899999999998887665320 13789999998 32222221 110000 0012222221
Q ss_pred --cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411 129 --MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 129 --vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG 206 (242)
++.........+..+|+|+.+=++.+=+ .+..|++.-..=|+|+|
T Consensus 104 L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~---------------------------------~~~~L~~tl~~ll~~~~ 150 (173)
T PF10294_consen 104 LDWGDELDSDLLEPHSFDVILASDVLYDEE---------------------------------LFEPLVRTLKRLLKPNG 150 (173)
T ss_dssp --TTS-HHHHHHS-SSBSEEEEES--S-GG---------------------------------GHHHHHHHHHHHBTT-T
T ss_pred EEecCcccccccccccCCEEEEecccchHH---------------------------------HHHHHHHHHHHHhCCCC
Confidence 2222323445567888888866665511 11225555566678999
Q ss_pred eEEEEecccCCCCCCCChhhHHHHHHH
Q 043411 207 RMFLTFLGRSIADPSSKDCCCLWELLT 233 (242)
Q Consensus 207 ~lvl~~~g~~~~~~~~~~~~~~~~~l~ 233 (242)
.++++..-|... ...+|+.++
T Consensus 151 ~vl~~~~~R~~~------~~~F~~~~~ 171 (173)
T PF10294_consen 151 KVLLAYKRRRKS------EQEFFDRLK 171 (173)
T ss_dssp TEEEEEE-S-TG------GCHHHHHH-
T ss_pred EEEEEeCEecHH------HHHHHHHhh
Confidence 977777666332 134566654
No 128
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=96.27 E-value=0.058 Score=49.73 Aligned_cols=19 Identities=26% Similarity=0.580 Sum_probs=16.8
Q ss_pred ccEEeeecCCCCcchHHHH
Q 043411 51 CFNVADLGCSSGPNTLLVV 69 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~ 69 (242)
..+|+|+|||+|.+++.+.
T Consensus 145 ~~~VLDlGcGtG~~a~~la 163 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLA 163 (315)
T ss_pred CCEEEEecCCCCHHHHHHH
Confidence 5799999999999988776
No 129
>PRK00811 spermidine synthase; Provisional
Probab=96.27 E-value=0.02 Score=51.68 Aligned_cols=114 Identities=13% Similarity=0.079 Sum_probs=60.2
Q ss_pred CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhc-CchhHHhhhhcCCCC-cee
Q 043411 49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFES-LPDFYERIKKDKFGP-CFI 126 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~-l~~~~~~l~~~~~~~-~f~ 126 (242)
+++-+|+|+|||+|..+..+++ + ++.-+|...|+-. ..-.+.+. ++....... ..++ -++
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~--------~-------~~~~~V~~VEid~-~vv~~a~~~~~~~~~~~~--~d~rv~v~ 136 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLK--------H-------PSVEKITLVEIDE-RVVEVCRKYLPEIAGGAY--DDPRVELV 136 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHc--------C-------CCCCEEEEEeCCH-HHHHHHHHHhHHhccccc--cCCceEEE
Confidence 5678999999999988776641 1 1224666677653 22222222 111100000 1122 223
Q ss_pred eccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411 127 AGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 127 ~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG 206 (242)
.+=+..|-.+ +++++|+|++-.+-+| .|. ..-|. ..|++...+-|+|||
T Consensus 137 ~~Da~~~l~~--~~~~yDvIi~D~~dp~---~~~-------------------~~l~t-------~ef~~~~~~~L~~gG 185 (283)
T PRK00811 137 IGDGIKFVAE--TENSFDVIIVDSTDPV---GPA-------------------EGLFT-------KEFYENCKRALKEDG 185 (283)
T ss_pred ECchHHHHhh--CCCcccEEEECCCCCC---Cch-------------------hhhhH-------HHHHHHHHHhcCCCc
Confidence 3323333333 5678999998544333 011 01121 247777778889999
Q ss_pred eEEEE
Q 043411 207 RMFLT 211 (242)
Q Consensus 207 ~lvl~ 211 (242)
++++.
T Consensus 186 vlv~~ 190 (283)
T PRK00811 186 IFVAQ 190 (283)
T ss_pred EEEEe
Confidence 99874
No 130
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=96.23 E-value=0.0063 Score=58.71 Aligned_cols=108 Identities=18% Similarity=0.293 Sum_probs=57.8
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+|||+|+.+...++.. .+. + -...||--.--.|=+-++= ..+..++++.. |..+.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~----~~~----~---~a~~VyAVEkn~~A~~~l~-------~~v~~n~w~~~-V~vi~ 247 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAG----ARA----G---GAVKVYAVEKNPNAVVTLQ-------KRVNANGWGDK-VTVIH 247 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTT----HHH----C---CESEEEEEESSTHHHHHHH-------HHHHHTTTTTT-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHH----HHh----C---CCeEEEEEcCCHhHHHHHH-------HHHHhcCCCCe-EEEEe
Confidence 5899999999999988776433 222 1 1255554332211111111 11111233222 45677
Q ss_pred cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411 131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
|+. +.+-++..+|+++| -||=. ..+|+ .+ ++ .|.+|.+=|+|||.++
T Consensus 248 ~d~-r~v~lpekvDIIVS----ElLGs----fg~nE-------l~-pE---------------~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 248 GDM-REVELPEKVDIIVS----ELLGS----FGDNE-------LS-PE---------------CLDAADRFLKPDGIMI 294 (448)
T ss_dssp S-T-TTSCHSS-EEEEEE-------BT----TBTTT-------SH-HH---------------HHHHGGGGEEEEEEEE
T ss_pred Ccc-cCCCCCCceeEEEE----eccCC----ccccc-------cC-HH---------------HHHHHHhhcCCCCEEe
Confidence 787 88888889999999 44421 22232 11 11 5778888999999886
No 131
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=96.22 E-value=0.065 Score=49.23 Aligned_cols=25 Identities=20% Similarity=0.093 Sum_probs=19.7
Q ss_pred HHHHHHHHhhhccCceEEEEecccC
Q 043411 192 SAFLSLRSEEIVSGGRMFLTFLGRS 216 (242)
Q Consensus 192 ~~FL~~Ra~EL~pGG~lvl~~~g~~ 216 (242)
..+|+.-++-|+|||++++.+....
T Consensus 274 ~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 274 ERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred HHHHHHHHHHccCCcEEEEEEcCCC
Confidence 4477777788899999999887543
No 132
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=96.13 E-value=0.029 Score=51.42 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHH
Q 043411 31 KAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVV 69 (242)
Q Consensus 31 ~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~ 69 (242)
-++.+|++.+. +..+|+|+|||||-.|+...
T Consensus 151 lcL~~Le~~~~--------~g~~vlDvGcGSGILaIAa~ 181 (300)
T COG2264 151 LCLEALEKLLK--------KGKTVLDVGCGSGILAIAAA 181 (300)
T ss_pred HHHHHHHHhhc--------CCCEEEEecCChhHHHHHHH
Confidence 45555665542 56899999999999888664
No 133
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.06 E-value=0.045 Score=48.85 Aligned_cols=30 Identities=7% Similarity=0.056 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhhccCceEEEEecccCC
Q 043411 188 QRDFSAFLSLRSEEIVSGGRMFLTFLGRSI 217 (242)
Q Consensus 188 ~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~ 217 (242)
.+.-..+|+.=++-|+|||+|+.+++....
T Consensus 175 ~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 175 SALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 334455888888889999999999876544
No 134
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=95.89 E-value=0.015 Score=52.02 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=15.7
Q ss_pred HHHHHHHhhhccCceEEEE
Q 043411 193 AFLSLRSEEIVSGGRMFLT 211 (242)
Q Consensus 193 ~FL~~Ra~EL~pGG~lvl~ 211 (242)
.|++.-++-|+|||++++.
T Consensus 167 ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 167 EFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred HHHHHHHHHhCCCcEEEEc
Confidence 3777777888999999986
No 135
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.76 E-value=0.087 Score=48.73 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=17.2
Q ss_pred CccEEeeecCCCCcchHHHH
Q 043411 50 GCFNVADLGCSSGPNTLLVV 69 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~ 69 (242)
+..+|+|+|||+|.++..+.
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA 99 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMS 99 (322)
T ss_pred CCCEEEEEeCCccHHHHHHH
Confidence 34799999999999998775
No 136
>PRK07402 precorrin-6B methylase; Provisional
Probab=95.76 E-value=0.048 Score=46.09 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhhccCceEEEEecc
Q 043411 191 FSAFLSLRSEEIVSGGRMFLTFLG 214 (242)
Q Consensus 191 ~~~FL~~Ra~EL~pGG~lvl~~~g 214 (242)
+..+|+.-.+-|+|||++++....
T Consensus 121 ~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 121 IKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred HHHHHHHHHHhcCCCeEEEEEeec
Confidence 344777777779999999998753
No 137
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=95.64 E-value=0.03 Score=50.95 Aligned_cols=136 Identities=18% Similarity=0.185 Sum_probs=84.0
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecC
Q 043411 17 SYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLND 96 (242)
Q Consensus 17 sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nD 96 (242)
-|++.+..=...-...+|+..+.+... +.-..++|.|||.|.-+. .. |...++-.|
T Consensus 17 IYd~ia~~fs~tr~~~Wp~v~qfl~~~-----~~gsv~~d~gCGngky~~------------------~~-p~~~~ig~D 72 (293)
T KOG1331|consen 17 IYDKIATHFSATRAAPWPMVRQFLDSQ-----PTGSVGLDVGCGNGKYLG------------------VN-PLCLIIGCD 72 (293)
T ss_pred HHHHhhhhccccccCccHHHHHHHhcc-----CCcceeeecccCCcccCc------------------CC-Ccceeeecc
Confidence 356555553333344566777766532 446899999999996532 22 336777777
Q ss_pred CCCCchHHHhhcCchhHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCC
Q 043411 97 LPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSP 176 (242)
Q Consensus 97 Lp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~ 176 (242)
++. ..+ ..-.. .....- +-.+.-.-.+++.++|.+.|.+.+||||.--.
T Consensus 73 ~c~-------~l~----~~ak~-~~~~~~---~~ad~l~~p~~~~s~d~~lsiavihhlsT~~R---------------- 121 (293)
T KOG1331|consen 73 LCT-------GLL----GGAKR-SGGDNV---CRADALKLPFREESFDAALSIAVIHHLSTRER---------------- 121 (293)
T ss_pred hhh-------hhc----ccccc-CCCcee---ehhhhhcCCCCCCccccchhhhhhhhhhhHHH----------------
Confidence 772 111 11110 111101 11244577789999999999999999886322
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecccCCCCCC
Q 043411 177 PSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPS 221 (242)
Q Consensus 177 ~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~ 221 (242)
.+ +.++.-.+.|+|||.+.+..-+.....+.
T Consensus 122 -------R~-------~~l~e~~r~lrpgg~~lvyvwa~~q~~~~ 152 (293)
T KOG1331|consen 122 -------RE-------RALEELLRVLRPGGNALVYVWALEQHQSS 152 (293)
T ss_pred -------HH-------HHHHHHHHHhcCCCceEEEEehhhccCcc
Confidence 11 14566667889999999998887665543
No 138
>PRK04457 spermidine synthase; Provisional
Probab=95.60 E-value=0.045 Score=48.93 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=18.8
Q ss_pred HHHHHHhhhccCceEEEEecccC
Q 043411 194 FLSLRSEEIVSGGRMFLTFLGRS 216 (242)
Q Consensus 194 FL~~Ra~EL~pGG~lvl~~~g~~ 216 (242)
|++...+-|+|||++++...+++
T Consensus 159 fl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 159 FFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred HHHHHHHhcCCCcEEEEEcCCCc
Confidence 78888888999999999877653
No 139
>PHA03412 putative methyltransferase; Provisional
Probab=95.33 E-value=0.032 Score=49.61 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=16.9
Q ss_pred ccEEeeecCCCCcchHHHHH
Q 043411 51 CFNVADLGCSSGPNTLLVVS 70 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~ 70 (242)
..+|+|+|||+|..++.+..
T Consensus 50 ~grVLDlG~GSG~Lalala~ 69 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVH 69 (241)
T ss_pred CCEEEEccChHHHHHHHHHH
Confidence 47999999999988887653
No 140
>PRK01581 speE spermidine synthase; Validated
Probab=95.30 E-value=0.037 Score=52.21 Aligned_cols=18 Identities=6% Similarity=0.130 Sum_probs=15.1
Q ss_pred HHHHHHhhhccCceEEEE
Q 043411 194 FLSLRSEEIVSGGRMFLT 211 (242)
Q Consensus 194 FL~~Ra~EL~pGG~lvl~ 211 (242)
|++...+-|+|||+|++.
T Consensus 250 Fy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 250 LFARIATFLTEDGAFVCQ 267 (374)
T ss_pred HHHHHHHhcCCCcEEEEe
Confidence 677777788999999886
No 141
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=95.18 E-value=0.087 Score=43.46 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=17.7
Q ss_pred CccEEeeecCCCCcchHHHHH
Q 043411 50 GCFNVADLGCSSGPNTLLVVS 70 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~ 70 (242)
..-+|+|+|||+|..|..+++
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~ 33 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLE 33 (169)
T ss_pred CcCEEEEECCCccHHHHHHHh
Confidence 346899999999999998763
No 142
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.12 E-value=0.32 Score=41.94 Aligned_cols=144 Identities=14% Similarity=0.200 Sum_probs=85.5
Q ss_pred HHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCch
Q 043411 32 AWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPD 111 (242)
Q Consensus 32 ~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~ 111 (242)
+++.||+...++.. ..+.-++|+|||||--|-.+.+.+. |....+-.|+- |.
T Consensus 28 LlDaLekd~~eL~~---~~~~i~lEIG~GSGvvstfL~~~i~--------------~~~~~latDiN-----------p~ 79 (209)
T KOG3191|consen 28 LLDALEKDAAELKG---HNPEICLEIGCGSGVVSTFLASVIG--------------PQALYLATDIN-----------PE 79 (209)
T ss_pred HHHHHHHHHHHHhh---cCceeEEEecCCcchHHHHHHHhcC--------------CCceEEEecCC-----------HH
Confidence 56777777776643 2367899999999987777765552 24667777774 21
Q ss_pred -hHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHH--HHHH
Q 043411 112 -FYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFW--EQFQ 188 (242)
Q Consensus 112 -~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~--~q~~ 188 (242)
....+...+-+.+-+-.|-.|+..-|-+ +++|+..= .|+-+....+.|- ..-...||+ +-.+
T Consensus 80 A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~-~~VDvLvf---------NPPYVpt~~~~i~-----~~~i~~a~aGG~~Gr 144 (209)
T KOG3191|consen 80 ALEATLETARCNRVHIDVVRTDLLSGLRN-ESVDVLVF---------NPPYVPTSDEEIG-----DEGIASAWAGGKDGR 144 (209)
T ss_pred HHHHHHHHHHhcCCccceeehhHHhhhcc-CCccEEEE---------CCCcCcCCcccch-----hHHHHHHHhcCcchH
Confidence 1111111111223344555677666666 88887654 2443332222220 111234455 4455
Q ss_pred HHHHHHHHHHHhhhccCceEEEEecccCCC
Q 043411 189 RDFSAFLSLRSEEIVSGGRMFLTFLGRSIA 218 (242)
Q Consensus 189 ~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~ 218 (242)
+=..+||..--.=|.|-|++.+....++..
T Consensus 145 ~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p 174 (209)
T KOG3191|consen 145 EVTDRLLPQVPDILSPRGVFYLVALRANKP 174 (209)
T ss_pred HHHHHHHhhhhhhcCcCceEEeeehhhcCH
Confidence 556778877777889999999998876553
No 143
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=94.94 E-value=0.085 Score=49.07 Aligned_cols=118 Identities=19% Similarity=0.267 Sum_probs=65.2
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
.--.++|+|||-|.--+.--..-|+ . -+-+-..|...||-..-++....... +..+...|++
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~------------~-~igiDIAevSI~qa~~RYrdm~~r~~---~~~f~a~f~~-- 178 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIG------------E-YIGIDIAEVSINQARKRYRDMKNRFK---KFIFTAVFIA-- 178 (389)
T ss_pred cccccceeccCCcccHhHhhhhccc------------c-eEeeehhhccHHHHHHHHHHHHhhhh---cccceeEEEE--
Confidence 3456788999999874433211111 0 13333334444554444443322111 1112334443
Q ss_pred cccccccc---C--CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043411 130 LGSFYQRL---F--PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVS 204 (242)
Q Consensus 130 pgSFy~~l---~--p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~p 204 (242)
+-+|+++| + ++-++|++=|=+|+|+-=. +- +-.+.+|+.-++-|+|
T Consensus 179 ~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFe-----------------te------------e~ar~~l~Nva~~Lkp 229 (389)
T KOG1975|consen 179 ADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFE-----------------TE------------ESARIALRNVAKCLKP 229 (389)
T ss_pred eccchhHHHHhccCCCCCcceeeeeeeEeeeec-----------------cH------------HHHHHHHHHHHhhcCC
Confidence 34666333 2 3334999999999998111 11 1123488999999999
Q ss_pred CceEEEEecc
Q 043411 205 GGRMFLTFLG 214 (242)
Q Consensus 205 GG~lvl~~~g 214 (242)
||.++-|++-
T Consensus 230 GG~FIgTiPd 239 (389)
T KOG1975|consen 230 GGVFIGTIPD 239 (389)
T ss_pred CcEEEEecCc
Confidence 9999988764
No 144
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=94.92 E-value=0.4 Score=43.37 Aligned_cols=127 Identities=15% Similarity=0.223 Sum_probs=68.2
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHH---hhhh---cCCCC
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYE---RIKK---DKFGP 123 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~---~l~~---~~~~~ 123 (242)
.++||--.|||||-=.--++-.+.+.... .....++|+-.|+-. ..|=+.-..... .+.. ....+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~------~~~~~~~I~AtDId~---~~L~~A~~G~Y~~~~~~~~~~~~~~~r 166 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGK------LAGFRVKILATDIDL---SVLEKARAGIYPSRELLRGLPPELLRR 166 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhcc------ccCCceEEEEEECCH---HHHHHHhcCCCChhHhhccCCHHHHhh
Confidence 58999999999996544333223222221 122359999999952 222111111000 0000 01135
Q ss_pred ceeeccccccc--------------cccC---CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHH
Q 043411 124 CFIAGMLGSFY--------------QRLF---PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQ 186 (242)
Q Consensus 124 ~f~~~vpgSFy--------------~~l~---p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q 186 (242)
+|.-+.+|+|- +-+. ..+-+|+|+|=+.|=.+++.- +
T Consensus 167 yF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~------------------------q-- 220 (268)
T COG1352 167 YFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEET------------------------Q-- 220 (268)
T ss_pred hEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHH------------------------H--
Confidence 66666555442 1121 456799999955554443311 1
Q ss_pred HHHHHHHHHHHHHhhhccCceEEEEecccCCCC
Q 043411 187 FQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIAD 219 (242)
Q Consensus 187 ~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~ 219 (242)
.+.++.-+.-|+|||+|++ |..+..
T Consensus 221 -----~~il~~f~~~L~~gG~Lfl---G~sE~~ 245 (268)
T COG1352 221 -----ERILRRFADSLKPGGLLFL---GHSETI 245 (268)
T ss_pred -----HHHHHHHHHHhCCCCEEEE---ccCccc
Confidence 1256666778899999999 555543
No 145
>PLN02672 methionine S-methyltransferase
Probab=94.90 E-value=0.064 Score=56.87 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=24.1
Q ss_pred cEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 043411 52 FNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLP 98 (242)
Q Consensus 52 ~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp 98 (242)
.+|+|+|||+|..++.+.... +..+++.-|+-
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~---------------~~~~v~avDis 151 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKW---------------LPSKVYGLDIN 151 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHC---------------CCCEEEEEECC
Confidence 589999999999998776322 23577777775
No 146
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=94.84 E-value=0.033 Score=47.98 Aligned_cols=29 Identities=17% Similarity=0.480 Sum_probs=22.2
Q ss_pred ccccccccc--CCCCceeEEEcccceeeccc
Q 043411 129 MLGSFYQRL--FPSRGINFIHSSYSVHWLSK 157 (242)
Q Consensus 129 vpgSFy~~l--~p~~svdl~~Ss~alhWLs~ 157 (242)
+.++-.+-| ||++|+|.++-+-|||=+.+
T Consensus 60 iq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~ 90 (193)
T PF07021_consen 60 IQGDLDEGLADFPDQSFDYVILSQTLQAVRR 90 (193)
T ss_pred EECCHHHhHhhCCCCCccEEehHhHHHhHhH
Confidence 445555444 89999999999999987655
No 147
>PLN02366 spermidine synthase
Probab=94.65 E-value=0.084 Score=48.52 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=16.0
Q ss_pred CCccEEeeecCCCCcchHHH
Q 043411 49 PGCFNVADLGCSSGPNTLLV 68 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~ 68 (242)
+++-+|+++|||.|..+..+
T Consensus 90 ~~pkrVLiIGgG~G~~~rel 109 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREI 109 (308)
T ss_pred CCCCeEEEEcCCccHHHHHH
Confidence 56789999999999865444
No 148
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=94.21 E-value=0.17 Score=43.56 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=26.2
Q ss_pred cCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEE
Q 043411 137 LFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLT 211 (242)
Q Consensus 137 l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~ 211 (242)
-.+.+.+|+|+|-+.|-.++.. .=.+.++.-++-|+|||+|+++
T Consensus 131 ~~~~~~fD~I~CRNVlIYF~~~-------------------------------~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 131 DPPFGRFDLIFCRNVLIYFDPE-------------------------------TQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp ------EEEEEE-SSGGGS-HH-------------------------------HHHHHHHHHGGGEEEEEEEEE-
T ss_pred CcccCCccEEEecCEEEEeCHH-------------------------------HHHHHHHHHHHHcCCCCEEEEe
Confidence 4467789999997666654331 1123788888999999999994
No 149
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=94.11 E-value=0.11 Score=45.75 Aligned_cols=114 Identities=19% Similarity=0.293 Sum_probs=65.1
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
...++|||||.|...+..+ ++ .|+.-++--+.-.+ .+-+.+. .......+|+.+.-..
T Consensus 49 ~pi~lEIGfG~G~~l~~~A--------~~-------nP~~nfiGiEi~~~---~v~~~l~----k~~~~~l~Nlri~~~D 106 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMA--------KK-------NPEKNFLGIEIRVP---GVAKALK----KIKELGLKNLRLLCGD 106 (227)
T ss_pred CcEEEEECCCCCHHHHHHH--------HH-------CCCCCEEEEEEehH---HHHHHHH----HHHHcCCCcEEEEcCC
Confidence 3689999999997766544 11 24443333333321 1111111 1111222366655433
Q ss_pred c-ccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411 131 G-SFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 131 g-SFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
+ .+.+.++|++|+|=|+=.+.=-| |..- -+|.++.. + .||+.-++=|+|||.+.
T Consensus 107 A~~~l~~~~~~~sl~~I~i~FPDPW----pKkR-H~KRRl~~----~----------------~fl~~~a~~Lk~gG~l~ 161 (227)
T COG0220 107 AVEVLDYLIPDGSLDKIYINFPDPW----PKKR-HHKRRLTQ----P----------------EFLKLYARKLKPGGVLH 161 (227)
T ss_pred HHHHHHhcCCCCCeeEEEEECCCCC----CCcc-ccccccCC----H----------------HHHHHHHHHccCCCEEE
Confidence 3 44577778889999998877777 3310 03444421 1 18888888889999999
Q ss_pred EE
Q 043411 210 LT 211 (242)
Q Consensus 210 l~ 211 (242)
+.
T Consensus 162 ~a 163 (227)
T COG0220 162 FA 163 (227)
T ss_pred EE
Confidence 84
No 150
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=94.04 E-value=0.36 Score=45.88 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhhhccCceEEEEec
Q 043411 186 QFQRDFSAFLSLRSEEIVSGGRMFLTFL 213 (242)
Q Consensus 186 q~~~D~~~FL~~Ra~EL~pGG~lvl~~~ 213 (242)
.+.+++..++..-.+-|+|||.|++...
T Consensus 313 ~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 313 GACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 4456777788888888999999997653
No 151
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=94.01 E-value=0.41 Score=48.71 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhhhccCceEEEEec
Q 043411 187 FQRDFSAFLSLRSEEIVSGGRMFLTFL 213 (242)
Q Consensus 187 ~~~D~~~FL~~Ra~EL~pGG~lvl~~~ 213 (242)
..+|+..++..-.+-|+|||.++++..
T Consensus 631 ~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 631 VQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 346677788777888999999988654
No 152
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=93.91 E-value=0.34 Score=40.15 Aligned_cols=37 Identities=27% Similarity=0.289 Sum_probs=27.1
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCC
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGN 100 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~N 100 (242)
+..+++|+|||.|.-|-.+++.. .+.-.|+--|+...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~--------------~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRG--------------GPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTST--------------TTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecc--------------cccceEEEEecccc
Confidence 57999999999999988776322 13478888888754
No 153
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=93.89 E-value=0.42 Score=42.97 Aligned_cols=45 Identities=16% Similarity=0.267 Sum_probs=34.0
Q ss_pred CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411 139 PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 139 p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
-..-+|+|.+.+--.| ||..-. ..-+.+||+.-+.-|.|||+|++
T Consensus 163 ~~~~fDiIlcLSiTkW--------------IHLNwg-------------D~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 163 IQPEFDIILCLSITKW--------------IHLNWG-------------DDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred ccccccEEEEEEeeee--------------Eecccc-------------cHHHHHHHHHHHHhhCcCcEEEE
Confidence 4456788888888888 333221 14578899999999999999998
No 154
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=93.84 E-value=0.12 Score=45.35 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=25.3
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLP 98 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp 98 (242)
++-+|+|+||++|..++.+...+ ++..+++.-|..
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~--------------~~~g~v~tiD~d 102 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALAL--------------PEDGRITAIDID 102 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhC--------------CCCCEEEEEECC
Confidence 46799999999999988776332 123567777765
No 155
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=93.70 E-value=0.23 Score=43.08 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=15.4
Q ss_pred CccEEeeecCCCCcchHHHH
Q 043411 50 GCFNVADLGCSSGPNTLLVV 69 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~ 69 (242)
.-.+|+|+|||||.+|..+.
T Consensus 72 pg~~VLeIGtGsGY~aAlla 91 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLA 91 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHH
T ss_pred CCCEEEEecCCCcHHHHHHH
Confidence 34899999999999998765
No 156
>PRK03612 spermidine synthase; Provisional
Probab=93.30 E-value=0.24 Score=48.64 Aligned_cols=21 Identities=24% Similarity=0.082 Sum_probs=16.6
Q ss_pred CCccEEeeecCCCCcchHHHH
Q 043411 49 PGCFNVADLGCSSGPNTLLVV 69 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~ 69 (242)
+++-+|+|+|||+|..+..++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll 316 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVL 316 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHH
Confidence 457899999999998665544
No 157
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=93.29 E-value=0.31 Score=47.44 Aligned_cols=129 Identities=12% Similarity=0.162 Sum_probs=70.1
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|++||.|.-|..+.+.+ . .+-.|+-||.-.+-...|-..+..+ ...++-+....
T Consensus 114 g~~VLD~CAAPGgKTt~la~~l-~-------------~~g~lvA~D~~~~R~~~L~~nl~r~-------G~~nv~v~~~D 172 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIAALM-N-------------NQGAIVANEYSASRVKVLHANISRC-------GVSNVALTHFD 172 (470)
T ss_pred CCEEEEeCCCccHHHHHHHHHc-C-------------CCCEEEEEeCCHHHHHHHHHHHHHc-------CCCeEEEEeCc
Confidence 5799999999999998876433 1 1357888888754444444443321 12232222111
Q ss_pred cccccccCCCCceeEEEcccceeecccCCCcccC----CCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411 131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLEN----NKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~----nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG 206 (242)
+.=+...+ ++++|.|.- ++|++-.. +.+..+ ..++..+.+--..| +.+|..-++-|+|||
T Consensus 173 ~~~~~~~~-~~~fD~ILv--------DaPCSG~G~~rk~p~~~~--~~s~~~v~~l~~lQ-----~~iL~~A~~~LkpGG 236 (470)
T PRK11933 173 GRVFGAAL-PETFDAILL--------DAPCSGEGTVRKDPDALK--NWSPESNLEIAATQ-----RELIESAFHALKPGG 236 (470)
T ss_pred hhhhhhhc-hhhcCeEEE--------cCCCCCCcccccCHHHhh--hCCHHHHHHHHHHH-----HHHHHHHHHHcCCCc
Confidence 11112222 345677764 66665321 111111 12222232222223 347888888899999
Q ss_pred eEEEEecccC
Q 043411 207 RMFLTFLGRS 216 (242)
Q Consensus 207 ~lvl~~~g~~ 216 (242)
+||-+++.-.
T Consensus 237 ~LVYSTCT~~ 246 (470)
T PRK11933 237 TLVYSTCTLN 246 (470)
T ss_pred EEEEECCCCC
Confidence 9999988743
No 158
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=93.09 E-value=0.039 Score=49.44 Aligned_cols=125 Identities=12% Similarity=0.119 Sum_probs=67.2
Q ss_pred cccccCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHH------------HH
Q 043411 6 VPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSK------------II 73 (242)
Q Consensus 6 ~~~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~------------ii 73 (242)
.|.|.|=.-...|.+|-..+..++..+...+. .....+|+|+|||+|..|..+.+. .+
T Consensus 8 ~l~~~~~~~~k~~gq~fl~~~~i~~~i~~~l~----------~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~ 77 (272)
T PRK00274 8 LLERYGHRAKKSLGQNFLIDENILDKIVDAAG----------PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLA 77 (272)
T ss_pred HHHHcCCCCCcccCcCcCCCHHHHHHHHHhcC----------CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHH
Confidence 45555444455666666555555544333221 123468999999999999988873 33
Q ss_pred HHHHHHHhhhcCCCCceEEEecCCCCCchHHH-----hhcCchhHH-h-hhh---cCC-CCceeeccccccccccC-CCC
Q 043411 74 DSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSI-----FESLPDFYE-R-IKK---DKF-GPCFIAGMLGSFYQRLF-PSR 141 (242)
Q Consensus 74 ~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~l-----f~~l~~~~~-~-l~~---~~~-~~~f~~~vpgSFy~~l~-p~~ 141 (242)
+.+++... . +.++++..|...-++..+ +.++|-... . +.. ... -...+..+...|-+|+. .++
T Consensus 78 ~~~~~~~~----~-~~v~~i~~D~~~~~~~~~~~~~vv~NlPY~iss~ii~~~l~~~~~~~~~~l~~QkE~A~Rl~a~pg 152 (272)
T PRK00274 78 PILAETFA----E-DNLTIIEGDALKVDLSELQPLKVVANLPYNITTPLLFHLLEERDPIRDMVVMVQKEVAERIVAKPG 152 (272)
T ss_pred HHHHHhhc----c-CceEEEEChhhcCCHHHcCcceEEEeCCccchHHHHHHHHhcCCCCCeeEEEeHHHHHHHHcCCCC
Confidence 33333221 1 358888888765555432 223331110 0 100 111 12344567778878886 556
Q ss_pred ceeE
Q 043411 142 GINF 145 (242)
Q Consensus 142 svdl 145 (242)
+-+.
T Consensus 153 ~~~y 156 (272)
T PRK00274 153 SKAY 156 (272)
T ss_pred Cccc
Confidence 5553
No 159
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=92.90 E-value=0.32 Score=44.36 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=29.3
Q ss_pred CCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEE
Q 043411 140 SRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLT 211 (242)
Q Consensus 140 ~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~ 211 (242)
.+.+|+|+|-+.+..++. .+-.+.++.-++-|+|||+|+++
T Consensus 221 ~~~fD~I~cRNvliyF~~-------------------------------~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFDK-------------------------------TTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred CCCcceeeHhhHHhcCCH-------------------------------HHHHHHHHHHHHHhCCCcEEEEe
Confidence 577888888776665433 12334777778889999999874
No 160
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=92.77 E-value=0.13 Score=45.83 Aligned_cols=29 Identities=7% Similarity=0.087 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhhccCceEEEEecccCCC
Q 043411 190 DFSAFLSLRSEEIVSGGRMFLTFLGRSIA 218 (242)
Q Consensus 190 D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~ 218 (242)
++..++-.-+.-|+|||.++++.=.-+.+
T Consensus 203 ~Le~~~~~aa~~L~~gGlfaFSvE~l~~~ 231 (287)
T COG4976 203 ALEGLFAGAAGLLAPGGLFAFSVETLPDD 231 (287)
T ss_pred chhhHHHHHHHhcCCCceEEEEecccCCC
Confidence 44457888899999999999987655443
No 161
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=92.22 E-value=0.79 Score=40.40 Aligned_cols=132 Identities=12% Similarity=0.067 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCch
Q 043411 32 AWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPD 111 (242)
Q Consensus 32 ~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~ 111 (242)
..|.|.+.+.++.. +...||++.|||.|.+...+.+ + -..|+-.|+...=-...|+....
T Consensus 28 pnp~L~~~~~~l~~---~~~~rvLvPgCGkg~D~~~LA~--------~---------G~~V~GvDlS~~Ai~~~~~e~~~ 87 (226)
T PRK13256 28 PNEFLVKHFSKLNI---NDSSVCLIPMCGCSIDMLFFLS--------K---------GVKVIGIELSEKAVLSFFSQNTI 87 (226)
T ss_pred CCHHHHHHHHhcCC---CCCCeEEEeCCCChHHHHHHHh--------C---------CCcEEEEecCHHHHHHHHHHcCC
Confidence 45666666554321 3457999999999999887762 1 14566666653222333332110
Q ss_pred hHHhhhh----cCCCCceeeccccccccccCC---CCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHH
Q 043411 112 FYERIKK----DKFGPCFIAGMLGSFYQRLFP---SRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFW 184 (242)
Q Consensus 112 ~~~~l~~----~~~~~~f~~~vpgSFy~~l~p---~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~ 184 (242)
... +.. ......-+.-+-|+|++--.+ -+.+|+|+=..+++=| |+ +.+..|+
T Consensus 88 ~~~-~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Al---pp-----------------~~R~~Y~ 146 (226)
T PRK13256 88 NYE-VIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIAL---PN-----------------DLRTNYA 146 (226)
T ss_pred Ccc-eecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcC---CH-----------------HHHHHHH
Confidence 000 000 000111122344577652211 2467888776666643 22 3344454
Q ss_pred HHHHHHHHHHHHHHHhhhccCceEEEEeccc
Q 043411 185 EQFQRDFSAFLSLRSEEIVSGGRMFLTFLGR 215 (242)
Q Consensus 185 ~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~ 215 (242)
+ .-++=|+|||.+++.++-.
T Consensus 147 ~-----------~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 147 K-----------MMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred H-----------HHHHHhCCCcEEEEEEEec
Confidence 4 3344469999999999854
No 162
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=90.55 E-value=0.46 Score=38.21 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHH
Q 043411 29 MSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVS 70 (242)
Q Consensus 29 ~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~ 70 (242)
++++..++...++... ....+.+|+|+|||.|..|+.+..
T Consensus 6 i~~~~~~i~~~~~~~~--~~~~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 6 IERMAELIDSLCDSVG--ESKRCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred HHHHHHHHHHHHHHhh--ccCCCCEEEEeCCChhHHHHHHHH
Confidence 3455666666555431 124589999999999999998874
No 163
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=90.34 E-value=0.97 Score=40.79 Aligned_cols=20 Identities=25% Similarity=0.233 Sum_probs=17.4
Q ss_pred CccEEeeecCCCCcchHHHH
Q 043411 50 GCFNVADLGCSSGPNTLLVV 69 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~ 69 (242)
+..+++|+|.|.|.-|..+.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~ 113 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLA 113 (265)
T ss_pred cCCceEEecCCCcHHHHHHH
Confidence 46889999999999988775
No 164
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=90.16 E-value=2.1 Score=38.47 Aligned_cols=103 Identities=19% Similarity=0.286 Sum_probs=64.9
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhc-CchhHHhhhhcCCCCceeecc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFES-LPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~-l~~~~~~l~~~~~~~~f~~~v 129 (242)
-.||+|-|.|||..|..+...+ . |+-+|+-=|.-. ||-..-+. +..+ .+ .+. +.-.
T Consensus 95 g~rVlEAGtGSG~lt~~La~~v-g-------------~~G~v~tyE~r~-d~~k~A~~Nl~~~--~l-----~d~-v~~~ 151 (256)
T COG2519 95 GSRVLEAGTGSGALTAYLARAV-G-------------PEGHVTTYEIRE-DFAKTARENLSEF--GL-----GDR-VTLK 151 (256)
T ss_pred CCEEEEcccCchHHHHHHHHhh-C-------------CCceEEEEEecH-HHHHHHHHHHHHh--cc-----ccc-eEEE
Confidence 4899999999999999776433 1 234444333332 55444332 1111 11 111 2222
Q ss_pred ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411 130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF 209 (242)
Q Consensus 130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv 209 (242)
-|+..+-.++. .+|.++= ++|.+- +.|..-++.|+|||.++
T Consensus 152 ~~Dv~~~~~~~-~vDav~L--------Dmp~PW------------------------------~~le~~~~~Lkpgg~~~ 192 (256)
T COG2519 152 LGDVREGIDEE-DVDAVFL--------DLPDPW------------------------------NVLEHVSDALKPGGVVV 192 (256)
T ss_pred ecccccccccc-ccCEEEE--------cCCChH------------------------------HHHHHHHHHhCCCcEEE
Confidence 37888888887 8888876 666631 17889999999999999
Q ss_pred EEeccc
Q 043411 210 LTFLGR 215 (242)
Q Consensus 210 l~~~g~ 215 (242)
+-.+.-
T Consensus 193 ~y~P~v 198 (256)
T COG2519 193 VYSPTV 198 (256)
T ss_pred EEcCCH
Confidence 866654
No 165
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=90.05 E-value=1.4 Score=38.82 Aligned_cols=134 Identities=19% Similarity=0.223 Sum_probs=79.9
Q ss_pred ccccCCCCcchHHHhhHHHHHHHHH-------HHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHH
Q 043411 7 PCMNGGGGETSYAKNSNIQRTVMSK-------AWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKL 79 (242)
Q Consensus 7 ~~M~gG~g~~sY~~nS~~Q~~~~~~-------~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~ 79 (242)
+...|| -..|-..|.. -+...+ +..+|.+..... ...+..++++|+||=+..|.+.-.
T Consensus 6 i~~~GG--l~~YQ~AS~~-Gq~~~RGGdSSK~lv~wL~~~~~~~--~~~~~~lrlLEVGals~~N~~s~~---------- 70 (219)
T PF11968_consen 6 IEALGG--LEAYQRASKQ-GQSKDRGGDSSKWLVEWLKELGVRP--KNGRPKLRLLEVGALSTDNACSTS---------- 70 (219)
T ss_pred HHHccC--HHHHHHHHHh-cCCCCCCCchhHHHHHHhhhhcccc--ccccccceEEeecccCCCCccccc----------
Confidence 444555 6777666654 222222 444444433211 112346999999999988865321
Q ss_pred HhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccccccccCC---CCceeEEEcccceeecc
Q 043411 80 YHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFP---SRGINFIHSSYSVHWLS 156 (242)
Q Consensus 80 ~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p---~~svdl~~Ss~alhWLs 156 (242)
+.+.|.--||-+.+ +. - .--+|.++-.| .+.+|+|..|-.|.+
T Consensus 71 --------~~fdvt~IDLns~~--------~~---I-------------~qqDFm~rplp~~~~e~FdvIs~SLVLNf-- 116 (219)
T PF11968_consen 71 --------GWFDVTRIDLNSQH--------PG---I-------------LQQDFMERPLPKNESEKFDVISLSLVLNF-- 116 (219)
T ss_pred --------CceeeEEeecCCCC--------CC---c-------------eeeccccCCCCCCcccceeEEEEEEEEee--
Confidence 24667777886311 11 1 12277777665 779999999888877
Q ss_pred cCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce-----EEEEecccCC
Q 043411 157 KVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR-----MFLTFLGRSI 217 (242)
Q Consensus 157 ~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~-----lvl~~~g~~~ 217 (242)
+|.+.. + -..|++-.+-|+|+|. |++.++-..-
T Consensus 117 -VP~p~~--------------------R-------G~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv 154 (219)
T PF11968_consen 117 -VPDPKQ--------------------R-------GEMLRRAHKFLKPPGLSLFPSLFLVLPLPCV 154 (219)
T ss_pred -CCCHHH--------------------H-------HHHHHHHHHHhCCCCccCcceEEEEeCchHh
Confidence 454210 0 1155555666699999 9999886643
No 166
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=89.83 E-value=3.6 Score=35.70 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=13.0
Q ss_pred ccEEeeecCCCCcchHH
Q 043411 51 CFNVADLGCSSGPNTLL 67 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~ 67 (242)
..+|+|||||.|..-..
T Consensus 68 A~~VlDLGtGNG~~L~~ 84 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQ 84 (227)
T ss_pred ccceeeccCCchHHHHH
Confidence 34999999999965433
No 167
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=89.33 E-value=0.35 Score=44.29 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHH
Q 043411 30 SKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVV 69 (242)
Q Consensus 30 ~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~ 69 (242)
..++.+|++.. .+.-+|+|+|||||-.++...
T Consensus 149 ~lcl~~l~~~~--------~~g~~vLDvG~GSGILaiaA~ 180 (295)
T PF06325_consen 149 RLCLELLEKYV--------KPGKRVLDVGCGSGILAIAAA 180 (295)
T ss_dssp HHHHHHHHHHS--------STTSEEEEES-TTSHHHHHHH
T ss_pred HHHHHHHHHhc--------cCCCEEEEeCCcHHHHHHHHH
Confidence 44555555552 123599999999998888654
No 168
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=88.99 E-value=2.3 Score=40.20 Aligned_cols=63 Identities=16% Similarity=0.059 Sum_probs=41.6
Q ss_pred CCCcchHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceE
Q 043411 12 GGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQ 91 (242)
Q Consensus 12 G~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~q 91 (242)
..++..|+-|...-+.+...+...+... ....+|+|++||+|..++.+.... +.-.
T Consensus 28 ~~~~vFyqp~~~~nrdl~~~v~~~~~~~---------~~~~~vLDl~aGsG~~~l~~a~~~---------------~~~~ 83 (382)
T PRK04338 28 SWAPVFYNPRMELNRDISVLVLRAFGPK---------LPRESVLDALSASGIRGIRYALET---------------GVEK 83 (382)
T ss_pred CCCCeeeCccccchhhHHHHHHHHHHhh---------cCCCEEEECCCcccHHHHHHHHHC---------------CCCE
Confidence 3456788888777666555554444210 023689999999999999876332 1246
Q ss_pred EEecCCC
Q 043411 92 VFLNDLP 98 (242)
Q Consensus 92 v~~nDLp 98 (242)
|+.||.-
T Consensus 84 V~a~Din 90 (382)
T PRK04338 84 VTLNDIN 90 (382)
T ss_pred EEEEeCC
Confidence 8888885
No 169
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=88.06 E-value=0.65 Score=40.91 Aligned_cols=20 Identities=30% Similarity=0.184 Sum_probs=17.2
Q ss_pred CccEEeeecCCCCcchHHHH
Q 043411 50 GCFNVADLGCSSGPNTLLVV 69 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~ 69 (242)
+.-+|+|+|||+|..|..++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~ 94 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCAL 94 (228)
T ss_pred CCCEEEEcccCCCHHHHHHH
Confidence 34689999999999998776
No 170
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=87.40 E-value=0.78 Score=41.85 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=34.0
Q ss_pred CccEEeeecCCCCcchHHHHHH------------HHHHHHHHHhhhcCCCCceEEEecCCCCCch
Q 043411 50 GCFNVADLGCSSGPNTLLVVSK------------IIDSIHKLYHQVNKKLPEFQVFLNDLPGNDF 102 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~------------ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDF 102 (242)
..-+|+|+|||+|..|..+++. .++.++++....+. .+.++++..|....|+
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~-~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPL-ASKLEVIEGDALKTEF 99 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCC-CCcEEEEECCHhhhcc
Confidence 3468999999999999988764 34555544322111 2348888888754444
No 171
>PRK04148 hypothetical protein; Provisional
Probab=87.40 E-value=1.9 Score=35.08 Aligned_cols=19 Identities=11% Similarity=-0.071 Sum_probs=14.1
Q ss_pred CccEEeeecCCCCc-chHHH
Q 043411 50 GCFNVADLGCSSGP-NTLLV 68 (242)
Q Consensus 50 ~~~~IaDlGCs~G~-ns~~~ 68 (242)
+..+|+|+|||+|. .+..+
T Consensus 16 ~~~kileIG~GfG~~vA~~L 35 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKL 35 (134)
T ss_pred cCCEEEEEEecCCHHHHHHH
Confidence 35789999999996 44433
No 172
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=87.06 E-value=0.37 Score=41.59 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=15.4
Q ss_pred ccEEeeecCCCCcchHHH
Q 043411 51 CFNVADLGCSSGPNTLLV 68 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~ 68 (242)
.-+|+|+|||||..++..
T Consensus 46 g~~V~DlG~GTG~La~ga 63 (198)
T COG2263 46 GKTVLDLGAGTGILAIGA 63 (198)
T ss_pred CCEEEEcCCCcCHHHHHH
Confidence 457999999999998854
No 173
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=87.06 E-value=0.77 Score=41.92 Aligned_cols=19 Identities=26% Similarity=0.177 Sum_probs=16.8
Q ss_pred ccEEeeecCCCCcchHHHH
Q 043411 51 CFNVADLGCSSGPNTLLVV 69 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~ 69 (242)
..+|+|+|||+|..++.+.
T Consensus 174 ~~~VLDl~cG~G~~sl~la 192 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCA 192 (315)
T ss_pred CCEEEEccCCCCHHHHHHH
Confidence 4789999999999998776
No 174
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=86.14 E-value=0.93 Score=39.93 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=18.9
Q ss_pred CccEEeeecCCCCcchHHHHHH
Q 043411 50 GCFNVADLGCSSGPNTLLVVSK 71 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ 71 (242)
..-+|+|+|||+|..|..+.+.
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~ 50 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKR 50 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHh
Confidence 4579999999999999988753
No 175
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=85.37 E-value=8.5 Score=36.01 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=77.0
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
--+|+|+=++.|+=|..+.+.. . + ....|+-+|...+-...|..++..+ ...++-+.-..
T Consensus 157 ge~VlD~cAAPGGKTthla~~~----~--------~-~~~iV~A~D~~~~Rl~~l~~nl~Rl-------G~~nv~~~~~d 216 (355)
T COG0144 157 GERVLDLCAAPGGKTTHLAELM----E--------N-EGAIVVAVDVSPKRLKRLRENLKRL-------GVRNVIVVNKD 216 (355)
T ss_pred cCEEEEECCCCCCHHHHHHHhc----C--------C-CCceEEEEcCCHHHHHHHHHHHHHc-------CCCceEEEecc
Confidence 5899999999999999887433 1 1 1256799999865555555544321 22333333333
Q ss_pred cccccccCCCC-ceeEEEcccceeecccCCCcccC----CCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411 131 GSFYQRLFPSR-GINFIHSSYSVHWLSKVPENLEN----NKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG 205 (242)
Q Consensus 131 gSFy~~l~p~~-svdl~~Ss~alhWLs~~P~~~~~----nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG 205 (242)
+..+....+.+ .+|-|.- +.|++-.. |.+.-|-. ++..+.+.-.-|- ++|..=.+=|+||
T Consensus 217 ~~~~~~~~~~~~~fD~iLl--------DaPCSg~G~irr~Pd~~~~~--~~~~i~~l~~lQ~-----~iL~~a~~~lk~G 281 (355)
T COG0144 217 ARRLAELLPGGEKFDRILL--------DAPCSGTGVIRRDPDVKWRR--TPEDIAELAKLQK-----EILAAALKLLKPG 281 (355)
T ss_pred cccccccccccCcCcEEEE--------CCCCCCCcccccCccccccC--CHHHHHHHHHHHH-----HHHHHHHHhcCCC
Confidence 44444444444 4777765 77876542 11111211 1122222222233 3777777778999
Q ss_pred ceEEEEecccCCC
Q 043411 206 GRMFLTFLGRSIA 218 (242)
Q Consensus 206 G~lvl~~~g~~~~ 218 (242)
|.|+-+++....+
T Consensus 282 G~LVYSTCS~~~e 294 (355)
T COG0144 282 GVLVYSTCSLTPE 294 (355)
T ss_pred CEEEEEccCCchh
Confidence 9999999987554
No 176
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=84.46 E-value=2.5 Score=37.69 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=18.6
Q ss_pred CccEEeeecCCCCcchHHHHHH
Q 043411 50 GCFNVADLGCSSGPNTLLVVSK 71 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ 71 (242)
++-+|+|+|++.|..|+.++..
T Consensus 79 ~ak~iLEiGT~~GySal~la~a 100 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALA 100 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhh
Confidence 4679999999999999977633
No 177
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=84.12 E-value=0.91 Score=35.76 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=32.2
Q ss_pred eeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEE
Q 043411 143 INFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLT 211 (242)
Q Consensus 143 vdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~ 211 (242)
.|+|.+.+...| || ......-+.+|++.-+.-|+|||.|++=
T Consensus 2 yDvilclSVtkW--------------IH-------------Ln~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 2 YDVILCLSVTKW--------------IH-------------LNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp EEEEEEES-HHH--------------HH-------------HHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEEEEeeEE--------------EE-------------ecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 588888888888 22 2233456888999999999999999983
No 178
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=84.09 E-value=3.3 Score=38.16 Aligned_cols=54 Identities=15% Similarity=0.271 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 043411 30 SKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLP 98 (242)
Q Consensus 30 ~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp 98 (242)
..+..+|++++..+.. ...+++|+|+=||+|+- +++++.+. ...+ .++.++|..
T Consensus 117 ~~l~~~i~~ai~~L~~--~g~pvrIlDIAaG~GRY-------vlDal~~~-----~~~~-~~i~LrDys 170 (311)
T PF12147_consen 117 VHLEELIRQAIARLRE--QGRPVRILDIAAGHGRY-------VLDALEKH-----PERP-DSILLRDYS 170 (311)
T ss_pred HHHHHHHHHHHHHHHh--cCCceEEEEeccCCcHH-------HHHHHHhC-----CCCC-ceEEEEeCC
Confidence 3456677777776643 25689999999999965 44655554 1113 688888875
No 179
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=83.09 E-value=5.1 Score=28.91 Aligned_cols=25 Identities=28% Similarity=0.206 Sum_probs=18.9
Q ss_pred HHHHHHhhhccCceEEEEecccCCC
Q 043411 194 FLSLRSEEIVSGGRMFLTFLGRSIA 218 (242)
Q Consensus 194 FL~~Ra~EL~pGG~lvl~~~g~~~~ 218 (242)
.+....+-++|||.+++........
T Consensus 137 ~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (257)
T COG0500 137 ALRELLRVLKPGGRLVLSDLLRDGL 161 (257)
T ss_pred HHHHHHHhcCCCcEEEEEeccCCCC
Confidence 5566666689999999998876543
No 180
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=82.95 E-value=0.69 Score=41.02 Aligned_cols=48 Identities=13% Similarity=0.069 Sum_probs=31.2
Q ss_pred CccEEeeecCCCCcchHHHHHH------------HHHHHHHHHhhhcCCCCceEEEecCCCCCc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSK------------IIDSIHKLYHQVNKKLPEFQVFLNDLPGND 101 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~------------ii~~i~~~~~~~~~~~~~~qv~~nDLp~ND 101 (242)
+.-+|+|+|||+|..|..+.+. .++.+++.... .+.+.++..|.-..+
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~----~~~v~ii~~D~~~~~ 88 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA----AGNVEIIEGDALKVD 88 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc----CCCEEEEEeccccCC
Confidence 3478999999999999988864 33444433211 234777777764433
No 181
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=82.80 E-value=8.2 Score=34.46 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=16.7
Q ss_pred CccEEeeecCCCCcchHHHHHHH
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKI 72 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~i 72 (242)
.--+|+|-|.|||..|..+...+
T Consensus 40 pG~~VlEaGtGSG~lt~~l~r~v 62 (247)
T PF08704_consen 40 PGSRVLEAGTGSGSLTHALARAV 62 (247)
T ss_dssp TT-EEEEE--TTSHHHHHHHHHH
T ss_pred CCCEEEEecCCcHHHHHHHHHHh
Confidence 35899999999999999887554
No 182
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=82.79 E-value=1.6 Score=37.56 Aligned_cols=19 Identities=21% Similarity=0.013 Sum_probs=15.7
Q ss_pred ccEEeeecCCCCcchHHHH
Q 043411 51 CFNVADLGCSSGPNTLLVV 69 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~ 69 (242)
..+|+|+|||+|..++..+
T Consensus 54 ~~~vLDl~~GsG~l~l~~l 72 (199)
T PRK10909 54 DARCLDCFAGSGALGLEAL 72 (199)
T ss_pred CCEEEEcCCCccHHHHHHH
Confidence 3599999999998887544
No 183
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=81.63 E-value=1.3 Score=38.62 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=17.3
Q ss_pred CccEEeeecCCCCcchHHHH
Q 043411 50 GCFNVADLGCSSGPNTLLVV 69 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~ 69 (242)
..-+|+|+|||||.+|..+.
T Consensus 72 ~g~~VLEIGtGsGY~aAvla 91 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLA 91 (209)
T ss_pred CCCeEEEECCCchHHHHHHH
Confidence 46899999999999988664
No 184
>PLN02476 O-methyltransferase
Probab=80.55 E-value=6.4 Score=35.81 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=18.4
Q ss_pred CccEEeeecCCCCcchHHHHH
Q 043411 50 GCFNVADLGCSSGPNTLLVVS 70 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~ 70 (242)
++-+|+|+||++|..|+.+..
T Consensus 118 ~ak~VLEIGT~tGySal~lA~ 138 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVAL 138 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHH
Confidence 467999999999999998763
No 185
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=79.84 E-value=17 Score=32.55 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=13.9
Q ss_pred CccEEeeecCCCCcchH
Q 043411 50 GCFNVADLGCSSGPNTL 66 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~ 66 (242)
.+-+|+|+|||.|.-+.
T Consensus 33 ~P~~vLD~GsGpGta~w 49 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALW 49 (274)
T ss_pred CCceEEEecCChHHHHH
Confidence 47899999999997544
No 186
>PRK00536 speE spermidine synthase; Provisional
Probab=78.38 E-value=16 Score=32.91 Aligned_cols=100 Identities=13% Similarity=-0.011 Sum_probs=58.9
Q ss_pred CCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhc-CchhHHhhhhcCCCCcee
Q 043411 48 FPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFES-LPDFYERIKKDKFGPCFI 126 (242)
Q Consensus 48 ~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~-l~~~~~~l~~~~~~~~f~ 126 (242)
.|++-+|+=+|=|.|.....++ + .++ +|.+-|+-. ..-.+.+. +|.+...+.+ +++=+
T Consensus 70 h~~pk~VLIiGGGDGg~~REvL--------k--------h~~-~v~mVeID~-~Vv~~~k~~lP~~~~~~~D---pRv~l 128 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLF--------K--------YDT-HVDFVQADE-KILDSFISFFPHFHEVKNN---KNFTH 128 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHH--------C--------cCC-eeEEEECCH-HHHHHHHHHCHHHHHhhcC---CCEEE
Confidence 4778999999999997655444 1 133 888888864 34444554 6655443321 22222
Q ss_pred eccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411 127 AGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 127 ~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG 206 (242)
.. ++... ..+++|+|+.=+ +++ ..|.+...+-|+|||
T Consensus 129 ~~----~~~~~-~~~~fDVIIvDs------------------------~~~--------------~~fy~~~~~~L~~~G 165 (262)
T PRK00536 129 AK----QLLDL-DIKKYDLIICLQ------------------------EPD--------------IHKIDGLKRMLKEDG 165 (262)
T ss_pred ee----hhhhc-cCCcCCEEEEcC------------------------CCC--------------hHHHHHHHHhcCCCc
Confidence 11 22211 235677777632 111 126677778889999
Q ss_pred eEEEE
Q 043411 207 RMFLT 211 (242)
Q Consensus 207 ~lvl~ 211 (242)
.|+..
T Consensus 166 i~v~Q 170 (262)
T PRK00536 166 VFISV 170 (262)
T ss_pred EEEEC
Confidence 99874
No 187
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=78.30 E-value=3.4 Score=39.57 Aligned_cols=19 Identities=37% Similarity=0.317 Sum_probs=16.6
Q ss_pred ccEEeeecCCCCcchHHHH
Q 043411 51 CFNVADLGCSSGPNTLLVV 69 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~ 69 (242)
..+|+|+|||+|..|+.+.
T Consensus 298 ~~~VLDlgcGtG~~sl~la 316 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLA 316 (443)
T ss_pred CCEEEEEeccCCHHHHHHH
Confidence 4699999999999988765
No 188
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=77.72 E-value=15 Score=33.32 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhhcc--CCCCccEEeeecCCCCcchHHHH
Q 043411 32 AWPFLEETIKDMFSS--SFPGCFNVADLGCSSGPNTLLVV 69 (242)
Q Consensus 32 ~~~~l~~ai~~~~~~--~~~~~~~IaDlGCs~G~ns~~~~ 69 (242)
+.+-|.+++.++... ..+...+|+==|||-|+.+..++
T Consensus 36 ~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia 75 (270)
T PF07942_consen 36 CYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIA 75 (270)
T ss_pred HHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHh
Confidence 344444455555432 13457999999999999987554
No 189
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=77.27 E-value=5.9 Score=34.51 Aligned_cols=130 Identities=20% Similarity=0.235 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCch
Q 043411 32 AWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPD 111 (242)
Q Consensus 32 ~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~ 111 (242)
..|.|.+.+.++. .+..-+|+.-|||.|.....+. ++ -.+|+--|+...=-...|+....
T Consensus 22 ~~p~L~~~~~~l~---~~~~~rvLvPgCG~g~D~~~La--------~~---------G~~VvGvDls~~Ai~~~~~e~~~ 81 (218)
T PF05724_consen 22 PNPALVEYLDSLA---LKPGGRVLVPGCGKGYDMLWLA--------EQ---------GHDVVGVDLSPTAIEQAFEENNL 81 (218)
T ss_dssp STHHHHHHHHHHT---TSTSEEEEETTTTTSCHHHHHH--------HT---------TEEEEEEES-HHHHHHHHHHCTT
T ss_pred CCHHHHHHHHhcC---CCCCCeEEEeCCCChHHHHHHH--------HC---------CCeEEEEecCHHHHHHHHHHhcc
Confidence 4567777766532 2345799999999999977665 22 16667666653222222221110
Q ss_pred hH--Hhhhh-cCCCCceeeccccccccccCCC--CceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHH
Q 043411 112 FY--ERIKK-DKFGPCFIAGMLGSFYQRLFPS--RGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQ 186 (242)
Q Consensus 112 ~~--~~l~~-~~~~~~f~~~vpgSFy~~l~p~--~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q 186 (242)
.. ..... .....--+.-+-|+||+ +-|. +.+|+|+=..+++=| |+ +.+++|++
T Consensus 82 ~~~~~~~~~~~~~~~~~i~~~~gDfF~-l~~~~~g~fD~iyDr~~l~Al---pp-----------------~~R~~Ya~- 139 (218)
T PF05724_consen 82 EPTVTSVGGFKRYQAGRITIYCGDFFE-LPPEDVGKFDLIYDRTFLCAL---PP-----------------EMRERYAQ- 139 (218)
T ss_dssp EEECTTCTTEEEETTSSEEEEES-TTT-GGGSCHHSEEEEEECSSTTTS----G-----------------GGHHHHHH-
T ss_pred CCCcccccceeeecCCceEEEEccccc-CChhhcCCceEEEEecccccC---CH-----------------HHHHHHHH-
Confidence 00 00000 00001112345568876 2222 358999987777643 33 33556665
Q ss_pred HHHHHHHHHHHHHhhhccCceEEEEec
Q 043411 187 FQRDFSAFLSLRSEEIVSGGRMFLTFL 213 (242)
Q Consensus 187 ~~~D~~~FL~~Ra~EL~pGG~lvl~~~ 213 (242)
.-++=|+|||.+++.++
T Consensus 140 ----------~l~~ll~p~g~~lLi~l 156 (218)
T PF05724_consen 140 ----------QLASLLKPGGRGLLITL 156 (218)
T ss_dssp ----------HHHHCEEEEEEEEEEEE
T ss_pred ----------HHHHHhCCCCcEEEEEE
Confidence 33455799999544444
No 190
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=76.47 E-value=3 Score=32.90 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=15.4
Q ss_pred CccEEeeecCCCCcchHHHH
Q 043411 50 GCFNVADLGCSSGPNTLLVV 69 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~ 69 (242)
++...+|+|||.|-..-.+.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~ 77 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILN 77 (112)
T ss_pred CCCceEEccCCchHHHHHHH
Confidence 57889999999996655443
No 191
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=76.28 E-value=9.7 Score=33.46 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=20.1
Q ss_pred CccEEeeecCCCCcchHHHHHHH
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKI 72 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~i 72 (242)
.+-+|+|+|.+.|..|+.+...+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l 81 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALAL 81 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhC
Confidence 57899999999999999888555
No 192
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=75.74 E-value=8.5 Score=34.60 Aligned_cols=135 Identities=17% Similarity=0.278 Sum_probs=61.2
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM 129 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v 129 (242)
...+|+|-.||+|..-+..+..+.+.-.+ .+..+++-.|.- +.......+ .-.++... ....- ..
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~--------~~~~~i~G~ei~--~~~~~la~~---nl~l~~~~-~~~~~-i~ 110 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNK--------IKEINIYGIEID--PEAVALAKL---NLLLHGID-NSNIN-II 110 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHH--------HCCEEEEEEES---HHHHHHHHH---HHHHTTHH-CBGCE-EE
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccc--------cccceeEeecCc--HHHHHHHHh---hhhhhccc-ccccc-cc
Confidence 35689999999998876666544332111 135888877774 222222111 11111100 01000 12
Q ss_pred ccc-cccccCC-CCceeEEEcc--ccee-ecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043411 130 LGS-FYQRLFP-SRGINFIHSS--YSVH-WLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVS 204 (242)
Q Consensus 130 pgS-Fy~~l~p-~~svdl~~Ss--~alh-WLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~p 204 (242)
.++ |...... ...+|++++. +... |-. .....++ -|.... ++.. ..|| .|+..--+-|++
T Consensus 111 ~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~---~~~~~~~--~~~~~~-~~~~--------~~~~-~Fi~~~l~~Lk~ 175 (311)
T PF02384_consen 111 QGDSLENDKFIKNQKFDVIIGNPPFGSKEWKD---EELEKDE--RFKKYF-PPKS--------NAEY-AFIEHALSLLKP 175 (311)
T ss_dssp ES-TTTSHSCTST--EEEEEEE--CTCES-ST---GGGCTTC--CCTTCS-SSTT--------EHHH-HHHHHHHHTEEE
T ss_pred ccccccccccccccccccccCCCCcccccccc---ccccccc--cccccC-CCcc--------chhh-hhHHHHHhhccc
Confidence 233 3343333 6789999883 1111 311 0000000 010000 0000 1122 288888899999
Q ss_pred CceEEEEecc
Q 043411 205 GGRMFLTFLG 214 (242)
Q Consensus 205 GG~lvl~~~g 214 (242)
||++++.++.
T Consensus 176 ~G~~~~Ilp~ 185 (311)
T PF02384_consen 176 GGRAAIILPN 185 (311)
T ss_dssp EEEEEEEEEH
T ss_pred ccceeEEecc
Confidence 9999988874
No 193
>PLN02823 spermine synthase
Probab=73.57 E-value=10 Score=35.30 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=16.3
Q ss_pred CCccEEeeecCCCCcchHHHH
Q 043411 49 PGCFNVADLGCSSGPNTLLVV 69 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~ 69 (242)
+++-+|+.+|+|.|..+..++
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l 122 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVL 122 (336)
T ss_pred CCCCEEEEECCCchHHHHHHH
Confidence 456799999999997765444
No 194
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=73.48 E-value=4.6 Score=37.92 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=16.2
Q ss_pred cEEeeecCCCCcchHHHH
Q 043411 52 FNVADLGCSSGPNTLLVV 69 (242)
Q Consensus 52 ~~IaDlGCs~G~ns~~~~ 69 (242)
.+|+|+|||+|..|+.+.
T Consensus 235 ~~vLDL~cG~G~~~l~la 252 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCA 252 (374)
T ss_pred CEEEEccCCccHHHHHHh
Confidence 589999999999998776
No 195
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=73.45 E-value=25 Score=31.20 Aligned_cols=19 Identities=26% Similarity=0.527 Sum_probs=14.7
Q ss_pred hhccCceEEEEecccCCCC
Q 043411 201 EIVSGGRMFLTFLGRSIAD 219 (242)
Q Consensus 201 EL~pGG~lvl~~~g~~~~~ 219 (242)
=|++||.+++++=++.-+.
T Consensus 167 fLk~gG~~~i~iKa~siD~ 185 (229)
T PF01269_consen 167 FLKPGGHLIISIKARSIDS 185 (229)
T ss_dssp HEEEEEEEEEEEEHHHH-S
T ss_pred hccCCcEEEEEEecCcccC
Confidence 4599999999998875543
No 196
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=72.98 E-value=50 Score=31.08 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=32.0
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGND 101 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~ND 101 (242)
+.+.|+|||.+.|..=..+ |+++.++. ..+|.+.++--+.|...
T Consensus 110 ~~vHIID~~i~~G~QW~~L----iqaLa~R~----~gpp~LrIT~i~~~~~~ 153 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSL----IQALASRP----GGPPSLRITGIGPPNSG 153 (374)
T ss_pred cceEEEeccCCcchHHHHH----HHHHhcCC----CCCCeEEEEeccCCCCC
Confidence 5899999999999654444 46555552 24668999999997543
No 197
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=72.68 E-value=7.9 Score=33.49 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhhccCceEEEEe
Q 043411 189 RDFSAFLSLRSEEIVSGGRMFLTF 212 (242)
Q Consensus 189 ~D~~~FL~~Ra~EL~pGG~lvl~~ 212 (242)
.|+..-|..+..+|++|-+++ ++
T Consensus 135 ~~l~~~L~~~~~~lk~G~~II-s~ 157 (205)
T PF08123_consen 135 PDLNLALAELLLELKPGARII-ST 157 (205)
T ss_dssp HHHHHHHHHHHTTS-TT-EEE-ES
T ss_pred HHHHHHHHHHHhcCCCCCEEE-EC
Confidence 466667888999999876654 44
No 198
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=71.94 E-value=5.4 Score=35.94 Aligned_cols=103 Identities=16% Similarity=0.169 Sum_probs=64.8
Q ss_pred ccEEeeecCCCCcchHHHHHHHH------------HHHHHHHhhhcCCCCceEEEecCCCCCchHHHh------hcCchh
Q 043411 51 CFNVADLGCSSGPNTLLVVSKII------------DSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIF------ESLPDF 112 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii------------~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf------~~l~~~ 112 (242)
.-+|+|+|+|.|..|..+++..- ..++++. .....++|+..|--.=||..++ .+||=.
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~----~~~~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY~ 106 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERF----APYDNLTVINGDALKFDFPSLAQPYKVVANLPYN 106 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhc----ccccceEEEeCchhcCcchhhcCCCEEEEcCCCc
Confidence 58999999999999999987542 2333331 1234699999998777888754 233310
Q ss_pred H-Hh-----hhhcCCCCceeeccccccccccC-CCCceeEEEcccceeeccc
Q 043411 113 Y-ER-----IKKDKFGPCFIAGMLGSFYQRLF-PSRGINFIHSSYSVHWLSK 157 (242)
Q Consensus 113 ~-~~-----l~~~~~~~~f~~~vpgSFy~~l~-p~~svdl~~Ss~alhWLs~ 157 (242)
- +. +.........+.++-+-|-+|++ .++|=+.+.-+-.+||.-+
T Consensus 107 Isspii~kll~~~~~~~~~v~M~QkEva~Rl~A~pgsk~Yg~LsV~~q~~~~ 158 (259)
T COG0030 107 ISSPILFKLLEEKFIIQDMVLMVQKEVAERLVAKPGSKDYGRLSVLVQYYAD 158 (259)
T ss_pred ccHHHHHHHHhccCccceEEEEeHHHHHHHHhCCCCCcccchhhhhhhheEE
Confidence 0 11 11111112456677777888888 6677777666666666544
No 199
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=71.12 E-value=6.3 Score=37.43 Aligned_cols=19 Identities=32% Similarity=0.242 Sum_probs=16.9
Q ss_pred ccEEeeecCCCCcchHHHH
Q 043411 51 CFNVADLGCSSGPNTLLVV 69 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~ 69 (242)
..+|+|+|||+|..++.+.
T Consensus 293 ~~~vLDl~cG~G~~sl~la 311 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLA 311 (431)
T ss_pred CCEEEEcCCCcCHHHHHHH
Confidence 4689999999999999775
No 200
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=70.14 E-value=5.4 Score=35.65 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=23.5
Q ss_pred HHHHHHhhhccCCCCccEEeeecCCCCcchHHHHH
Q 043411 36 LEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVS 70 (242)
Q Consensus 36 l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~ 70 (242)
|++|+.+.. ...+.-+++|+|.|||..|..+++
T Consensus 67 L~~ale~F~--l~~k~kv~LDiGsSTGGFTd~lLq 99 (245)
T COG1189 67 LEKALEEFE--LDVKGKVVLDIGSSTGGFTDVLLQ 99 (245)
T ss_pred HHHHHHhcC--cCCCCCEEEEecCCCccHHHHHHH
Confidence 444444332 235678999999999999998773
No 201
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=69.01 E-value=7.6 Score=36.30 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=16.4
Q ss_pred cEEeeecCCCCcchHHHHH
Q 043411 52 FNVADLGCSSGPNTLLVVS 70 (242)
Q Consensus 52 ~~IaDlGCs~G~ns~~~~~ 70 (242)
.+|+|++||+|..|+.+..
T Consensus 208 ~~vLDl~~G~G~~sl~la~ 226 (362)
T PRK05031 208 GDLLELYCGNGNFTLALAR 226 (362)
T ss_pred CeEEEEeccccHHHHHHHh
Confidence 4699999999999996664
No 202
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=68.23 E-value=11 Score=35.55 Aligned_cols=109 Identities=13% Similarity=0.155 Sum_probs=64.4
Q ss_pred cEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecccc
Q 043411 52 FNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLG 131 (242)
Q Consensus 52 ~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpg 131 (242)
..+.|.||+-|+-+..+ +.+++. + ..||-.|++...-.........+.+ ...+ +-+
T Consensus 112 ~~~~~~~~g~~~~~~~i-----~~f~~~-----------~--~~Gl~~n~~e~~~~~~~~~~~~l~~---k~~~---~~~ 167 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYI-----AVFKKA-----------G--VVGLDNNAYEAFRANELAKKAYLDN---KCNF---VVA 167 (364)
T ss_pred ccccccCcCcCchhHHH-----HHhccC-----------C--ccCCCcCHHHHHHHHHHHHHHHhhh---hcce---ehh
Confidence 37889999999886644 322211 1 1345555554322222222222222 1223 556
Q ss_pred ccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEE
Q 043411 132 SFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLT 211 (242)
Q Consensus 132 SFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~ 211 (242)
.|-...|++++.|++.+.-+.+...+ -.++|++++. .++|||+.+.-
T Consensus 168 ~~~~~~fedn~fd~v~~ld~~~~~~~---------------------~~~~y~Ei~r------------v~kpGG~~i~~ 214 (364)
T KOG1269|consen 168 DFGKMPFEDNTFDGVRFLEVVCHAPD---------------------LEKVYAEIYR------------VLKPGGLFIVK 214 (364)
T ss_pred hhhcCCCCccccCcEEEEeecccCCc---------------------HHHHHHHHhc------------ccCCCceEEeH
Confidence 88899999999999999666665333 1234555333 37999999988
Q ss_pred ecccCC
Q 043411 212 FLGRSI 217 (242)
Q Consensus 212 ~~g~~~ 217 (242)
.+.+..
T Consensus 215 e~i~~~ 220 (364)
T KOG1269|consen 215 EWIKTA 220 (364)
T ss_pred HHHHhh
Confidence 776543
No 203
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=67.98 E-value=3.6 Score=34.86 Aligned_cols=19 Identities=16% Similarity=-0.025 Sum_probs=16.6
Q ss_pred ccEEeeecCCCCcchHHHH
Q 043411 51 CFNVADLGCSSGPNTLLVV 69 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~ 69 (242)
..+++|++||+|..++.++
T Consensus 50 g~~vLDLfaGsG~lglea~ 68 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEAL 68 (189)
T ss_pred CCEEEEecCCCcHHHHHHH
Confidence 4689999999999988776
No 204
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=67.41 E-value=8.1 Score=36.01 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=16.3
Q ss_pred cEEeeecCCCCcchHHHHH
Q 043411 52 FNVADLGCSSGPNTLLVVS 70 (242)
Q Consensus 52 ~~IaDlGCs~G~ns~~~~~ 70 (242)
.+|+|+|||+|..|+.+..
T Consensus 199 ~~vlDl~~G~G~~sl~la~ 217 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQ 217 (353)
T ss_pred CcEEEEeccccHHHHHHHH
Confidence 3699999999999996664
No 205
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.31 E-value=7.5 Score=32.88 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=34.9
Q ss_pred ccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEE
Q 043411 132 SFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLT 211 (242)
Q Consensus 132 SFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~ 211 (242)
+-.++.|-++|+|+|.....+--|. .+....+|+.+.+=|+|||+|-++
T Consensus 37 As~e~~F~dns~d~iyaeHvlEHlt-------------------------------~~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 37 ASNESMFEDNSVDAIYAEHVLEHLT-------------------------------YDEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred hhhhccCCCcchHHHHHHHHHHHHh-------------------------------HHHHHHHHHHHHHHhCcCcEEEEE
Confidence 4448889999999887633222111 123344666666667999999999
Q ss_pred eccc
Q 043411 212 FLGR 215 (242)
Q Consensus 212 ~~g~ 215 (242)
.+..
T Consensus 86 vPdl 89 (185)
T COG4627 86 VPDL 89 (185)
T ss_pred cCCc
Confidence 8744
No 206
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=63.25 E-value=5.3 Score=33.52 Aligned_cols=17 Identities=29% Similarity=0.567 Sum_probs=14.5
Q ss_pred CccEEeeecCCCCcchH
Q 043411 50 GCFNVADLGCSSGPNTL 66 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~ 66 (242)
+..+|+|+|||.|-.++
T Consensus 48 Egkkl~DLgcgcGmLs~ 64 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSI 64 (185)
T ss_pred cCcchhhhcCchhhhHH
Confidence 45789999999998874
No 207
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=62.29 E-value=5.6 Score=36.86 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=14.9
Q ss_pred CccEEeeecCCCCcchHHH
Q 043411 50 GCFNVADLGCSSGPNTLLV 68 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~ 68 (242)
...+|+|+|||+|.-..++
T Consensus 114 ~~~~vLDIGtGag~I~~lL 132 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLI 132 (321)
T ss_pred CCceEEEecCCccHHHHHH
Confidence 4689999999999655544
No 208
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=61.75 E-value=11 Score=32.82 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=17.1
Q ss_pred CccEEeeecCCCCcchHHHHH
Q 043411 50 GCFNVADLGCSSGPNTLLVVS 70 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~ 70 (242)
+--+|+|+||+.|.=|...++
T Consensus 69 p~~~VlD~G~APGsWsQVavq 89 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQ 89 (232)
T ss_pred CCCEEEEccCCCChHHHHHHH
Confidence 468999999999988776653
No 209
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=61.57 E-value=63 Score=31.41 Aligned_cols=134 Identities=15% Similarity=0.171 Sum_probs=70.4
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec-
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG- 128 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~- 128 (242)
+--||+|.=++.|.-|..+. ++.+ -+-.||-||--.|--..|-.++..+. ..++-++-
T Consensus 241 ~gERIlDmcAAPGGKTt~IA-----alMk---------n~G~I~AnD~n~~r~~~l~~n~~rlG-------v~ntiv~n~ 299 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIA-----ALMK---------NTGVIFANDSNENRLKSLKANLHRLG-------VTNTIVSNY 299 (460)
T ss_pred CCCeecchhcCCCchHHHHH-----HHHc---------CCceEEecccchHHHHHHHHHHHHhC-------CCceEEEcc
Confidence 36899999999999996554 2222 15789999988666666655554321 12222221
Q ss_pred cccccccccCCCCceeEEEcccceeecccCCCcccC--CCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411 129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLEN--NKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~--nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG 206 (242)
=+..|=+..||+ ++|=|. =+.|++-+. +|........+ ......|.. .+ +..|-.--+-+++||
T Consensus 300 D~~ef~~~~~~~-~fDRVL--------LDAPCSGtgvi~K~~~vkt~k~-~~di~~~~~-LQ---r~LllsAi~lv~~GG 365 (460)
T KOG1122|consen 300 DGREFPEKEFPG-SFDRVL--------LDAPCSGTGVISKDQSVKTNKT-VKDILRYAH-LQ---RELLLSAIDLVKAGG 365 (460)
T ss_pred CcccccccccCc-ccceee--------ecCCCCCCcccccccccccchh-HHHHHHhHH-HH---HHHHHHHHhhccCCc
Confidence 122333334444 454442 244664321 33332211111 111222221 11 224445567789999
Q ss_pred eEEEEecccCCC
Q 043411 207 RMFLTFLGRSIA 218 (242)
Q Consensus 207 ~lvl~~~g~~~~ 218 (242)
+||-+++...-+
T Consensus 366 vLVYSTCSI~~~ 377 (460)
T KOG1122|consen 366 VLVYSTCSITVE 377 (460)
T ss_pred EEEEEeeecchh
Confidence 999999876543
No 210
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=61.49 E-value=9.6 Score=35.91 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=17.5
Q ss_pred CccEEeeecCCCCcchHHHH
Q 043411 50 GCFNVADLGCSSGPNTLLVV 69 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~ 69 (242)
.-.+++|+|||+|.-|-.++
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~ 230 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLV 230 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHH
Confidence 46799999999999998776
No 211
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=61.13 E-value=14 Score=33.24 Aligned_cols=62 Identities=24% Similarity=0.424 Sum_probs=41.2
Q ss_pred cccccccc--ccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411 128 GMLGSFYQ--RLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG 205 (242)
Q Consensus 128 ~vpgSFy~--~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG 205 (242)
-+.|+-|+ +=|+++|+|+++- +.|.- . .+.+-|.+.|-+.+-+.| +||
T Consensus 189 iilGD~~e~V~~~~D~sfDaIiH--------DPPRf-S--------------~AgeLYseefY~El~RiL-------krg 238 (287)
T COG2521 189 IILGDAYEVVKDFDDESFDAIIH--------DPPRF-S--------------LAGELYSEEFYRELYRIL-------KRG 238 (287)
T ss_pred EecccHHHHHhcCCccccceEee--------CCCcc-c--------------hhhhHhHHHHHHHHHHHc-------CcC
Confidence 47778774 4579999999875 44431 1 123677877777777776 999
Q ss_pred ceEE--EEecccCCCC
Q 043411 206 GRMF--LTFLGRSIAD 219 (242)
Q Consensus 206 G~lv--l~~~g~~~~~ 219 (242)
|+|+ ++..|....+
T Consensus 239 GrlFHYvG~Pg~ryrG 254 (287)
T COG2521 239 GRLFHYVGNPGKRYRG 254 (287)
T ss_pred CcEEEEeCCCCccccc
Confidence 9997 4444544443
No 212
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=59.60 E-value=5.7 Score=31.06 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=14.5
Q ss_pred EEeeecCCCCcchHHHH
Q 043411 53 NVADLGCSSGPNTLLVV 69 (242)
Q Consensus 53 ~IaDlGCs~G~ns~~~~ 69 (242)
+|+|+||+.|..|+.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~ 17 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFA 17 (143)
T ss_pred CEEEccCCccHHHHHHH
Confidence 58999999999887665
No 213
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=58.67 E-value=5.5 Score=35.13 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=14.8
Q ss_pred ccEEeeecCCCCcchHHH
Q 043411 51 CFNVADLGCSSGPNTLLV 68 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~ 68 (242)
..-+||||||=|...+.+
T Consensus 61 kvefaDIGCGyGGLlv~L 78 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKL 78 (249)
T ss_pred cceEEeeccCccchhhhc
Confidence 478999999999876644
No 214
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=56.44 E-value=11 Score=33.92 Aligned_cols=48 Identities=19% Similarity=0.172 Sum_probs=33.5
Q ss_pred CceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecccCC
Q 043411 141 RGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSI 217 (242)
Q Consensus 141 ~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~ 217 (242)
...|.+.|++||-=.++-++ .|. +=|++-+.-|||||.|++...-..+
T Consensus 157 ~~~D~v~s~fcLE~a~~d~~---------------------~y~--------~al~ni~~lLkpGG~Lil~~~l~~t 204 (256)
T PF01234_consen 157 PKFDCVISSFCLESACKDLD---------------------EYR--------RALRNISSLLKPGGHLILAGVLGST 204 (256)
T ss_dssp SSEEEEEEESSHHHH-SSHH---------------------HHH--------HHHHHHHTTEEEEEEEEEEEESS-S
T ss_pred cchhhhhhhHHHHHHcCCHH---------------------HHH--------HHHHHHHHHcCCCcEEEEEEEcCce
Confidence 46999999999876554222 233 3566667888999999998885544
No 215
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=51.81 E-value=18 Score=35.32 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=26.8
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLP 98 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp 98 (242)
...+|+|.|||+|...+.++..+. ... .....+..++.-|.-
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~----~~~---~~~~~~~~i~g~DId 72 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNE----EIN---YFKEVELNIYFADID 72 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHH----hcC---Ccccceeeeeeechh
Confidence 468999999999999777765442 110 001124677777764
No 216
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=49.62 E-value=14 Score=33.47 Aligned_cols=128 Identities=15% Similarity=0.146 Sum_probs=66.9
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
..+|+|+-+|.|.-|..+.+.. . ..-.++-+|.-.+-...|-..+.. + ...++-+. -
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~-------------~-~~g~i~A~D~~~~Rl~~l~~~~~r----~---g~~~v~~~--~ 142 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELM-------------G-NKGEIVANDISPKRLKRLKENLKR----L---GVFNVIVI--N 142 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHT-------------T-TTSEEEEEESSHHHHHHHHHHHHH----T---T-SSEEEE--E
T ss_pred cccccccccCCCCceeeeeecc-------------c-chhHHHHhccCHHHHHHHHHHHHh----c---CCceEEEE--e
Confidence 4679999999999998776333 1 136788888874443333332221 1 11222222 1
Q ss_pred ccccccc---CCCCceeEEEcccceeecccCCCcccC----CCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhh-
Q 043411 131 GSFYQRL---FPSRGINFIHSSYSVHWLSKVPENLEN----NKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEI- 202 (242)
Q Consensus 131 gSFy~~l---~p~~svdl~~Ss~alhWLs~~P~~~~~----nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL- 202 (242)
.+. .++ .+...+|.+.- +.|++-.. +.+.-|. .++.. .+.+. +-=...|+.-++-+
T Consensus 143 ~D~-~~~~~~~~~~~fd~Vlv--------DaPCSg~G~i~r~p~~~~~--~~~~~-~~~l~----~~Q~~iL~~a~~~~~ 206 (283)
T PF01189_consen 143 ADA-RKLDPKKPESKFDRVLV--------DAPCSGLGTIRRNPDIKWR--RSPED-IEKLA----ELQREILDNAAKLLN 206 (283)
T ss_dssp SHH-HHHHHHHHTTTEEEEEE--------ECSCCCGGGTTTCTTHHHH--E-TTH-HHHHH----HHHHHHHHHHHHCEH
T ss_pred ecc-ccccccccccccchhhc--------CCCccchhhhhhccchhhc--ccccc-cchHH----HHHHHHHHHHHHhhc
Confidence 222 222 33345777765 66665321 1111110 01111 11121 11234777777788
Q ss_pred ---ccCceEEEEecccCC
Q 043411 203 ---VSGGRMFLTFLGRSI 217 (242)
Q Consensus 203 ---~pGG~lvl~~~g~~~ 217 (242)
+|||+|+-+++.-..
T Consensus 207 ~~~k~gG~lvYsTCS~~~ 224 (283)
T PF01189_consen 207 IDFKPGGRLVYSTCSLSP 224 (283)
T ss_dssp HHBEEEEEEEEEESHHHG
T ss_pred ccccCCCeEEEEeccHHH
Confidence 899999999986643
No 217
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=49.52 E-value=11 Score=31.67 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=16.0
Q ss_pred EEeeecCCCCcchHHHHHH
Q 043411 53 NVADLGCSSGPNTLLVVSK 71 (242)
Q Consensus 53 ~IaDlGCs~G~ns~~~~~~ 71 (242)
+|+|.-||.|.||+.+...
T Consensus 2 ~vlD~fcG~GGNtIqFA~~ 20 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART 20 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT
T ss_pred EEEEeccCcCHHHHHHHHh
Confidence 6899999999999988754
No 218
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=48.41 E-value=24 Score=31.00 Aligned_cols=23 Identities=9% Similarity=0.261 Sum_probs=16.8
Q ss_pred CccEEeeecCCCCcchHHHHHHH
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKI 72 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~i 72 (242)
.+++|+|+|.|+|.++.-+++.+
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l 40 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYL 40 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHH
T ss_pred cCcEEEEECCCchHHHHHHHHHH
Confidence 36999999999998877666444
No 219
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=46.53 E-value=15 Score=31.62 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=18.8
Q ss_pred CccEEeeecCCCCcchHHHHHHH
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKI 72 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~i 72 (242)
++-+|+|+||++|..|+.++..+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l 67 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEAL 67 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTS
T ss_pred CCceEEEeccccccHHHHHHHhh
Confidence 46799999999999999887433
No 220
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=46.33 E-value=16 Score=35.79 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=18.3
Q ss_pred CCccEEeeecCCCCcchHHHHH
Q 043411 49 PGCFNVADLGCSSGPNTLLVVS 70 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~ 70 (242)
....-++|+|.|||-.|+..+.
T Consensus 65 ~gkv~vLdigtGTGLLSmMAvr 86 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLSMMAVR 86 (636)
T ss_pred CceEEEEEccCCccHHHHHHHH
Confidence 4578899999999999986654
No 221
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=44.34 E-value=26 Score=32.52 Aligned_cols=37 Identities=11% Similarity=0.186 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEeccc
Q 043411 179 VCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGR 215 (242)
Q Consensus 179 v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~ 215 (242)
+...|.-+-...+..+|.+--+-|+|||+|++..|-.
T Consensus 211 AiRI~VNdEL~~L~~~L~~a~~~L~~gGRl~VIsFHS 247 (314)
T COG0275 211 AIRIYVNDELEELEEALEAALDLLKPGGRLAVISFHS 247 (314)
T ss_pred hheeeehhHHHHHHHHHHHHHHhhCCCcEEEEEEecc
Confidence 3445666778899999999999999999999998854
No 222
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=44.23 E-value=69 Score=27.55 Aligned_cols=34 Identities=24% Similarity=0.213 Sum_probs=23.0
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLP 98 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp 98 (242)
..-+|+|.-||-|+.|+.+.+. . ..-.|+-+|+-
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~------~---------~~~~V~A~d~N 134 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKH------G---------KAKRVYAVDLN 134 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHH------T----------SSEEEEEES-
T ss_pred cceEEEEccCCccHHHHHHhhh------c---------CccEEEEecCC
Confidence 3579999999999999987521 0 12568888886
No 223
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=44.13 E-value=53 Score=28.80 Aligned_cols=63 Identities=19% Similarity=0.272 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHH--------HHHhhhc---CCCCceEEEecCCCCCc
Q 043411 33 WPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIH--------KLYHQVN---KKLPEFQVFLNDLPGND 101 (242)
Q Consensus 33 ~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~--------~~~~~~~---~~~~~~qv~~nDLp~ND 101 (242)
+.++.++|.+.-. -.++|+|.|||..|+.....+ +.+. .+|.+.+ ...-+++|+-.|--+=|
T Consensus 21 lavF~~ai~~va~------d~~~DLGaGsGiLs~~Aa~~A-~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~ 93 (252)
T COG4076 21 LAVFTSAIAEVAE------DTFADLGAGSGILSVVAAHAA-ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD 93 (252)
T ss_pred HHHHHHHHHHHhh------hceeeccCCcchHHHHHHhhh-ceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc
Confidence 3445556554432 678999999999999776553 2221 1222212 12246899999998888
Q ss_pred h
Q 043411 102 F 102 (242)
Q Consensus 102 F 102 (242)
|
T Consensus 94 f 94 (252)
T COG4076 94 F 94 (252)
T ss_pred c
Confidence 8
No 224
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=44.09 E-value=48 Score=30.37 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCceEEEEeccc
Q 043411 181 QAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGR 215 (242)
Q Consensus 181 ~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~ 215 (242)
..+.-+-...+..+|..-.+-|+|||+|++..|-.
T Consensus 205 RI~VN~El~~L~~~L~~~~~~L~~gGrl~visfHS 239 (296)
T PRK00050 205 RIEVNDELEELERALEAALDLLKPGGRLAVISFHS 239 (296)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 33445566779999999999999999999988854
No 225
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=44.03 E-value=49 Score=30.50 Aligned_cols=34 Identities=12% Similarity=0.258 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCceEEEEeccc
Q 043411 182 AFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGR 215 (242)
Q Consensus 182 ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~ 215 (242)
.+.-+-...+.++|..-.+-|+|||+|++..|-.
T Consensus 210 I~VN~EL~~L~~~L~~~~~~L~~gGrl~VISfHS 243 (305)
T TIGR00006 210 IYVNDELEELEEALQFAPNLLAPGGRLSIISFHS 243 (305)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 3445566779999999999999999999998843
No 226
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=40.65 E-value=27 Score=32.03 Aligned_cols=22 Identities=9% Similarity=0.031 Sum_probs=18.8
Q ss_pred ccEEeeecCCCCcchHHHHHHH
Q 043411 51 CFNVADLGCSSGPNTLLVVSKI 72 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~i 72 (242)
..+++|.+||.|.-|..+++.+
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~ 41 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERL 41 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhC
Confidence 3699999999999999888553
No 227
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=39.53 E-value=24 Score=31.73 Aligned_cols=35 Identities=31% Similarity=0.548 Sum_probs=19.5
Q ss_pred HHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHH
Q 043411 34 PFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVV 69 (242)
Q Consensus 34 ~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~ 69 (242)
|.|++...++.. ..+.+-+|+|+|||-=|.++..+
T Consensus 90 ~~Ld~fY~~if~-~~~~p~sVlDigCGlNPlalp~~ 124 (251)
T PF07091_consen 90 PNLDEFYDEIFG-RIPPPDSVLDIGCGLNPLALPWM 124 (251)
T ss_dssp GGHHHHHHHHCC-CS---SEEEEET-TTCHHHHHTT
T ss_pred hhHHHHHHHHHh-cCCCCchhhhhhccCCceehhhc
Confidence 334444443332 13458999999999888887544
No 228
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=39.48 E-value=34 Score=32.31 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=35.6
Q ss_pred CcchHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHH
Q 043411 14 GETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSK 71 (242)
Q Consensus 14 g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ 71 (242)
++..||-.+.+-+.+.-.+...+.+... ....++|+|+-||+|.-++...+.
T Consensus 14 ~~vFYNP~~~~nRDlsv~~~~~~~~~~~------~~~~~~vLD~faGsG~rgir~a~e 65 (374)
T TIGR00308 14 ETVFYNPRMQFNRDLSVTCIQAFDNLYG------KECYINIADALSASGIRAIRYAHE 65 (374)
T ss_pred CCcccCchhhccccHHHHHHHHHHHhhC------CcCCCEEEECCCchhHHHHHHHhh
Confidence 4678998888877765555444433211 112589999999999999988743
No 229
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=38.65 E-value=31 Score=23.92 Aligned_cols=28 Identities=21% Similarity=0.494 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411 180 CQAFWEQFQRDFSAFLSLRSEEIVSGGR 207 (242)
Q Consensus 180 ~~ay~~q~~~D~~~FL~~Ra~EL~pGG~ 207 (242)
.+.+++-|..||..++...+.+|+.-|+
T Consensus 12 ~~~~~~kf~~~w~~lf~~~s~~LK~~GI 39 (57)
T PF09597_consen 12 CEEHAEKFESDWEKLFTTSSKQLKELGI 39 (57)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHCCC
Confidence 3567788888999999999999998775
No 230
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=37.70 E-value=1e+02 Score=29.41 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=31.7
Q ss_pred CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhc
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFES 108 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~ 108 (242)
.--+|+|+=.+.|.-|+.+++.+ .+. .. .-.|.-||.-..--+.|-..
T Consensus 155 p~~~VLDmCAAPG~Kt~qLLeal----~~~------~~-~g~vvaND~d~~R~~~L~~q 202 (375)
T KOG2198|consen 155 PGDKVLDMCAAPGGKTAQLLEAL----HKD------PT-RGYVVANDVDPKRLNMLVHQ 202 (375)
T ss_pred CCCeeeeeccCCCccHHHHHHHH----hcC------CC-CCeeEecccCHHHHHHHHHH
Confidence 35799999999999999887444 322 11 24788888864444444433
No 231
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=37.30 E-value=62 Score=28.59 Aligned_cols=86 Identities=16% Similarity=0.227 Sum_probs=50.9
Q ss_pred CccEEeeecCCCCcchHHHHHHH------------HHHHHHHHhhhcCCCCceEEEecCCCCCchHH--------HhhcC
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKI------------IDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNS--------IFESL 109 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~i------------i~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~--------lf~~l 109 (242)
+.-.|+|+|.|.|..|..+.+.. ++.+++++. ..+.+++++.|--.=|... ++.++
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~----~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~Nl 105 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA----SNPNVEVINGDFLKWDLYDLLKNQPLLVVGNL 105 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT----TCSSEEEEES-TTTSCGGGHCSSSEEEEEEEE
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh----hcccceeeecchhccccHHhhcCCceEEEEEe
Confidence 46899999999999999887543 344444321 2345999999986444443 33344
Q ss_pred chhHH-h-----hhhcCCC-CceeeccccccccccCC
Q 043411 110 PDFYE-R-----IKKDKFG-PCFIAGMLGSFYQRLFP 139 (242)
Q Consensus 110 ~~~~~-~-----l~~~~~~-~~f~~~vpgSFy~~l~p 139 (242)
|-... . +.....+ ...+..++..+++|+..
T Consensus 106 Py~is~~il~~ll~~~~~g~~~~~l~vq~e~a~rl~a 142 (262)
T PF00398_consen 106 PYNISSPILRKLLELYRFGRVRMVLMVQKEVAERLLA 142 (262)
T ss_dssp TGTGHHHHHHHHHHHGGGCEEEEEEEEEHHHHHHHHT
T ss_pred cccchHHHHHHHhhcccccccceEEEEehhhhhhccC
Confidence 42111 0 1101221 34555688888888885
No 232
>PRK11524 putative methyltransferase; Provisional
Probab=36.41 E-value=61 Score=29.03 Aligned_cols=21 Identities=10% Similarity=0.295 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhhccCceEEEE
Q 043411 191 FSAFLSLRSEEIVSGGRMFLT 211 (242)
Q Consensus 191 ~~~FL~~Ra~EL~pGG~lvl~ 211 (242)
+..+|..-.+=|+|||.|++.
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEE
Confidence 456777778889999999985
No 233
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=36.10 E-value=1.2e+02 Score=27.96 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=35.7
Q ss_pred CCccEEeeecCCCCcchHHHHHHH------------HHHHHHHHhhhcCCCCceEEEecCCCCCc
Q 043411 49 PGCFNVADLGCSSGPNTLLVVSKI------------IDSIHKLYHQVNKKLPEFQVFLNDLPGND 101 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~i------------i~~i~~~~~~~~~~~~~~qv~~nDLp~ND 101 (242)
..+-.|+|+|-|||..|..+++.. +..+.++...... ....||++.|.-..|
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~-~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPK-SGKLQVLHGDFLKTD 120 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCc-cceeeEEecccccCC
Confidence 457899999999999999888653 3444444321111 135999999876666
No 234
>smart00400 ZnF_CHCC zinc finger.
Probab=35.66 E-value=33 Score=22.96 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=17.5
Q ss_pred ccEEeeecCCCCcchHHHHHHH
Q 043411 51 CFNVADLGCSSGPNTLLVVSKI 72 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~i 72 (242)
.-..=++||+.|.+.+-+++.+
T Consensus 21 kn~~~Cf~cg~gGd~i~fv~~~ 42 (55)
T smart00400 21 KQFFHCFGCGAGGNVISFLMKY 42 (55)
T ss_pred CCEEEEeCCCCCCCHHHHHHHH
Confidence 3456789999999998887655
No 235
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=33.43 E-value=21 Score=32.62 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=22.2
Q ss_pred HHHHHHHHHH-HhhhccCCCCccEEeeecCCCCcchHHH
Q 043411 31 KAWPFLEETI-KDMFSSSFPGCFNVADLGCSSGPNTLLV 68 (242)
Q Consensus 31 ~~~~~l~~ai-~~~~~~~~~~~~~IaDlGCs~G~ns~~~ 68 (242)
.+.+.+.+++ ..+. -.--||+||||++|--.+..
T Consensus 100 dl~~~l~~e~~~~~~----~~~k~vLELgCg~~Lp~i~~ 134 (282)
T KOG2920|consen 100 DLLPYLKEEIGAQMS----FSGKRVLELGCGAALPGIFA 134 (282)
T ss_pred HHHHHHHHHhhhheE----ecCceeEecCCcccccchhh
Confidence 4566677665 3221 12468999999999776644
No 236
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins. The N-terminal region of Kin17 contains a zinc-finger domain, while in the human and mouse proteins there is a RecA-like domain found in the C-terminal region. In humans, Kin17 protein forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle []. ; PDB: 2V1N_A.
Probab=32.76 E-value=48 Score=26.77 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=21.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhh
Q 043411 175 SPPSVCQAFWEQFQRDFSAFLSLRSEE 201 (242)
Q Consensus 175 s~~~v~~ay~~q~~~D~~~FL~~Ra~E 201 (242)
.|..+.+.|.+||.+||...|+.|..+
T Consensus 9 n~~k~i~~yS~eFe~~Fl~lLr~~hg~ 35 (127)
T PF10357_consen 9 NPGKFIDEYSEEFEKDFLRLLRRRHGT 35 (127)
T ss_dssp -GGG-HHHHHHHHHHHHHHHHHHHTSS
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455678999999999999999988654
No 237
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=30.90 E-value=53 Score=30.41 Aligned_cols=33 Identities=12% Similarity=0.151 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCceEEEEeccc
Q 043411 183 FWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGR 215 (242)
Q Consensus 183 y~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~ 215 (242)
+.-+-...+..+|..-.+-|+|||+|++..|-.
T Consensus 212 ~VN~EL~~L~~~L~~a~~~L~~gGrl~VISFHS 244 (310)
T PF01795_consen 212 AVNDELEELERGLEAAPDLLKPGGRLVVISFHS 244 (310)
T ss_dssp HHCTHHHHHHHHHHHHHHHEEEEEEEEEEESSH
T ss_pred HhccHHHHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence 344456779999999999999999999998843
No 238
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=30.28 E-value=79 Score=30.05 Aligned_cols=24 Identities=13% Similarity=0.394 Sum_probs=18.9
Q ss_pred CCccEEeeecCCCCcchHHHHHHH
Q 043411 49 PGCFNVADLGCSSGPNTLLVVSKI 72 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~i 72 (242)
|.++.|+|+|.|+|..+.-++..+
T Consensus 76 p~~~~lvEiGaG~G~l~~DiL~~l 99 (370)
T COG1565 76 PAPLKLVEIGAGRGTLASDILRTL 99 (370)
T ss_pred CCCceEEEeCCCcChHHHHHHHHH
Confidence 678999999999998766555444
No 239
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=29.39 E-value=32 Score=29.72 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=25.9
Q ss_pred EeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcC
Q 043411 54 VADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESL 109 (242)
Q Consensus 54 IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l 109 (242)
|||+||=+|...+.++++ ...-.++..|+-...+...-+++
T Consensus 1 vaDIGtDHgyLpi~L~~~---------------~~~~~~ia~DI~~gpL~~A~~~i 41 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN---------------GKAPKAIAVDINPGPLEKAKENI 41 (205)
T ss_dssp EEEET-STTHHHHHHHHT---------------TSEEEEEEEESSHHHHHHHHHHH
T ss_pred CceeccchhHHHHHHHhc---------------CCCCEEEEEeCCHHHHHHHHHHH
Confidence 799999999988876621 12356777777655555544444
No 240
>PF09119 SicP-binding: SicP binding; InterPro: IPR015203 Members of this family bind the chaperone SicP, which is required both to maintain the stability of SptP, as well as to ensure the eventual secretion of the protein. The domain is found in the Salmonella effector protein SptP, which interacts with SicP chaperone dimers mainly through four regions of its chaperone-binding domain. The structure of the SptP-SicP complex contains four molecules of SicP, aligned in a linear fashion and arranged in two sets of tightly bound homodimers that bind two SptP molecules. The SicP homodimers do not interact with each other, but are held together by a molecular interface formed between two SptP molecules. Each SptP molecule is wrapped around by three SicP chaperones (two chaperones from one homodimer and a third one from the opposite homodimer pair) []. ; GO: 0005615 extracellular space; PDB: 1JYO_F.
Probab=28.49 E-value=1e+02 Score=23.01 Aligned_cols=43 Identities=26% Similarity=0.405 Sum_probs=23.2
Q ss_pred EEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHH----HHHHHHHHHHHHHhh
Q 043411 146 IHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQ----FQRDFSAFLSLRSEE 201 (242)
Q Consensus 146 ~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q----~~~D~~~FL~~Ra~E 201 (242)
.|++--|+||+++|-- ....+++.|.++ -++-+.-||++-+++
T Consensus 4 ~f~~kvlt~L~~~PLl-------------kN~~AVq~~~e~~~~~nqktL~vFl~ALa~~ 50 (81)
T PF09119_consen 4 KFKSKVLTWLGKIPLL-------------KNTNAVQKYVENQRVENQKTLQVFLEALAER 50 (81)
T ss_dssp -BTTB-EEEEE----T-------------T-HHHHHHHHHCS--S-HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCccc-------------ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4667789999999973 123444555544 455678888887765
No 241
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=28.34 E-value=1e+02 Score=26.81 Aligned_cols=50 Identities=22% Similarity=0.254 Sum_probs=30.0
Q ss_pred chHHHhhHHHH---HHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHH
Q 043411 16 TSYAKNSNIQR---TVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSK 71 (242)
Q Consensus 16 ~sY~~nS~~Q~---~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ 71 (242)
.-|.+-+..+. ++.-++..+.++. ....+-.+|+||||+.|.=|..+.+.
T Consensus 14 D~Y~~~Ak~~gyRSRAa~KL~el~~k~------~i~~~~~~ViDLGAAPGgWsQva~~~ 66 (205)
T COG0293 14 DPYYKKAKKEGYRSRAAYKLLELNEKF------KLFKPGMVVVDLGAAPGGWSQVAAKK 66 (205)
T ss_pred CHHHHHHhhccccchHHHHHHHHHHhc------CeecCCCEEEEcCCCCCcHHHHHHHH
Confidence 34555555543 3333444444443 12344689999999999987766533
No 242
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=28.21 E-value=1.5e+02 Score=29.31 Aligned_cols=101 Identities=18% Similarity=0.267 Sum_probs=56.2
Q ss_pred CCCCcchHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCce
Q 043411 11 GGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEF 90 (242)
Q Consensus 11 gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~ 90 (242)
+|...+.|.+....=++.+..-+.++.-.+. ....-.|.|...+.|..+..+. +.|
T Consensus 332 ~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~------~~~iRNVMDMnAg~GGFAAAL~----------------~~~-- 387 (506)
T PF03141_consen 332 PGISPEEFKEDTKHWKKRVSHYKKLLGLAIK------WGRIRNVMDMNAGYGGFAAALI----------------DDP-- 387 (506)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhccccc------ccceeeeeeecccccHHHHHhc----------------cCC--
Confidence 4445555665555544444444443331211 2356789999999999988774 113
Q ss_pred EEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccccc---cccC-CCCceeEEEcccc
Q 043411 91 QVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFY---QRLF-PSRGINFIHSSYS 151 (242)
Q Consensus 91 qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy---~~l~-p~~svdl~~Ss~a 151 (242)
-++.|=.|...-||| + -+|-=|.-|.++ |..- -|++.||+|+..-
T Consensus 388 VWVMNVVP~~~~ntL----~------------vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~l 436 (506)
T PF03141_consen 388 VWVMNVVPVSGPNTL----P------------VIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGL 436 (506)
T ss_pred ceEEEecccCCCCcc----h------------hhhhcccchhccchhhccCCCCcchhheehhhh
Confidence 456677776555442 1 122223333433 2222 5789999998543
No 243
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=28.15 E-value=85 Score=26.99 Aligned_cols=111 Identities=17% Similarity=0.104 Sum_probs=60.1
Q ss_pred ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411 51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML 130 (242)
Q Consensus 51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp 130 (242)
-.-|+|||-|+|..|-.+++.- ..+...+.+ .=-| ||-.+.+.+.... + + +-
T Consensus 49 glpVlElGPGTGV~TkaIL~~g------------v~~~~L~~i-E~~~--dF~~~L~~~~p~~---------~-i---i~ 100 (194)
T COG3963 49 GLPVLELGPGTGVITKAILSRG------------VRPESLTAI-EYSP--DFVCHLNQLYPGV---------N-I---IN 100 (194)
T ss_pred CCeeEEEcCCccHhHHHHHhcC------------CCccceEEE-EeCH--HHHHHHHHhCCCc---------c-c---cc
Confidence 4689999999999887665322 111112222 2223 7776665543211 1 1 22
Q ss_pred ccc-----ccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411 131 GSF-----YQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG 205 (242)
Q Consensus 131 gSF-----y~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG 205 (242)
|+- |--.++..-+|-++|. +--|+= |..+.-+ +|+.--.-|.+|
T Consensus 101 gda~~l~~~l~e~~gq~~D~viS~--lPll~~------------------P~~~~ia-----------ile~~~~rl~~g 149 (194)
T COG3963 101 GDAFDLRTTLGEHKGQFFDSVISG--LPLLNF------------------PMHRRIA-----------ILESLLYRLPAG 149 (194)
T ss_pred cchhhHHHHHhhcCCCeeeeEEec--cccccC------------------cHHHHHH-----------HHHHHHHhcCCC
Confidence 222 2334566778888882 222221 1122222 444444557899
Q ss_pred ceEEEEecccCCCCC
Q 043411 206 GRMFLTFLGRSIADP 220 (242)
Q Consensus 206 G~lvl~~~g~~~~~~ 220 (242)
|.++.-..|.-+..+
T Consensus 150 g~lvqftYgp~s~v~ 164 (194)
T COG3963 150 GPLVQFTYGPLSPVL 164 (194)
T ss_pred CeEEEEEecCCCccc
Confidence 999999998655443
No 244
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.04 E-value=57 Score=27.53 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=34.5
Q ss_pred cccccCCCCcchHHHhhHHHHHHHHH-HHHH---HHHHHHhhhccCC-CCccEEeeecCCCCcchH
Q 043411 6 VPCMNGGGGETSYAKNSNIQRTVMSK-AWPF---LEETIKDMFSSSF-PGCFNVADLGCSSGPNTL 66 (242)
Q Consensus 6 ~~~M~gG~g~~sY~~nS~~Q~~~~~~-~~~~---l~~ai~~~~~~~~-~~~~~IaDlGCs~G~ns~ 66 (242)
.+.-.||.|-.-|+--+.+-+-++.+ ..|. -.+.+.++..... .+..+.+|+|+|.|+--+
T Consensus 23 l~~aagg~gla~sav~a~fvaPafRR~cvPYVpAtteQv~nVLSll~~n~~GklvDlGSGDGRiVl 88 (199)
T KOG4058|consen 23 LLQAAGGSGLAASAVWALFVAPAFRRLCVPYVPATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVL 88 (199)
T ss_pred HHHhccchhHHHHHHHHHHhhHHhheecccccCccHHHHHHHHHHccCCCCCcEEeccCCCceeeh
Confidence 34556777777777666654444433 2222 2233333322111 235899999999998644
No 245
>PHA03297 envelope glycoprotein L; Provisional
Probab=26.09 E-value=20 Score=29.85 Aligned_cols=56 Identities=16% Similarity=0.309 Sum_probs=36.7
Q ss_pred CCccEEeeecCCCCcchH------HHHHHHHHHHHHHHhhhcCCCCceEEEecCCCC----CchHH
Q 043411 49 PGCFNVADLGCSSGPNTL------LVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPG----NDFNS 104 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~------~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~----NDFn~ 104 (242)
.++-||++-.||+|+--- -.++++...+....-+..+++||.-+.+.|-+. |.|-.
T Consensus 38 gepkrileascgsgpimkgqlytaP~V~NL~~~laGIvVK~~CsPPEaILW~~~~~~aYWvNPyvv 103 (185)
T PHA03297 38 GEPKRILEASCGSGPIMKGQLFTSPNIKNLLNRTTGIMVKAHCNPPEAILWVDTPPKPVWVNPFAV 103 (185)
T ss_pred CCchhhhhhccCCCcccccccccCCCchhhhhhhceeEEecCCCCceeEEEecCCCceEEecHHHH
Confidence 468999999999998532 334445444433222234688999999999653 55544
No 246
>PRK13699 putative methylase; Provisional
Probab=25.86 E-value=76 Score=27.63 Aligned_cols=19 Identities=5% Similarity=-0.144 Sum_probs=14.7
Q ss_pred HHHHHHHHhhhccCceEEE
Q 043411 192 SAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 192 ~~FL~~Ra~EL~pGG~lvl 210 (242)
..+++.-.+-|+|||.|++
T Consensus 52 ~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVS 70 (227)
T ss_pred HHHHHHHHHHcCCCCEEEE
Confidence 3566667778999999886
No 247
>COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only]
Probab=25.80 E-value=2.2e+02 Score=20.32 Aligned_cols=41 Identities=10% Similarity=0.170 Sum_probs=25.8
Q ss_pred CCCCcchHHHHHHHHHHHHHHHh-hhcCCCCceEEEecCCCC
Q 043411 59 CSSGPNTLLVVSKIIDSIHKLYH-QVNKKLPEFQVFLNDLPG 99 (242)
Q Consensus 59 Cs~G~ns~~~~~~ii~~i~~~~~-~~~~~~~~~qv~~nDLp~ 99 (242)
|--|..+-..-..+++.|.+... .+|.++..+.|+++|.|.
T Consensus 8 ~~~g~~~~~~K~~la~~vT~~~~~~lg~~~~~i~Viieev~~ 49 (69)
T COG1942 8 LFEGRLDEEQKAELAAEVTEVTVETLGKDPSAIHVIIEEVPP 49 (69)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEecCh
Confidence 33476766544455555444322 256677779999999994
No 248
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=25.09 E-value=2e+02 Score=27.46 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhhhccCceEEEEeccc
Q 043411 185 EQFQRDFSAFLSLRSEEIVSGGRMFLTFLGR 215 (242)
Q Consensus 185 ~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~ 215 (242)
.++.+|+...+...-+=|+|||.+++++..+
T Consensus 309 ~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 309 FSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred hhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 5677888889999999999999999987654
No 249
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=24.52 E-value=5.3e+02 Score=23.36 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=16.6
Q ss_pred HHHHHHhhhccCceEEEE
Q 043411 194 FLSLRSEEIVSGGRMFLT 211 (242)
Q Consensus 194 FL~~Ra~EL~pGG~lvl~ 211 (242)
|++...+-|+++|+++..
T Consensus 172 Fy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 172 FYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred HHHHHHHhcCCCcEEEEe
Confidence 888889999999999987
No 250
>KOG3790 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.16 E-value=56 Score=31.89 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=15.3
Q ss_pred CccEEeeecCCCCcchHHHHHHH
Q 043411 50 GCFNVADLGCSSGPNTLLVVSKI 72 (242)
Q Consensus 50 ~~~~IaDlGCs~G~ns~~~~~~i 72 (242)
.+..-+|+||+.| ++..+.++
T Consensus 211 ~p~~f~d~gcgng--llvhllna 231 (529)
T KOG3790|consen 211 KPNKFVDIGCGNG--LLVHLLNA 231 (529)
T ss_pred cccchhccccCch--hHHHHHHH
Confidence 5788999999999 44444444
No 251
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=24.14 E-value=1.1e+02 Score=20.62 Aligned_cols=36 Identities=17% Similarity=0.368 Sum_probs=21.5
Q ss_pred CcchHHHHHHHHHHHHHHHhh-hcCCCCceEEEecCCC
Q 043411 62 GPNTLLVVSKIIDSIHKLYHQ-VNKKLPEFQVFLNDLP 98 (242)
Q Consensus 62 G~ns~~~~~~ii~~i~~~~~~-~~~~~~~~qv~~nDLp 98 (242)
|. |-.-.+.+++.|.+...+ .+.++..+.|+++|.|
T Consensus 11 Gr-s~EqK~~L~~~it~a~~~~~~~p~~~v~V~i~ev~ 47 (60)
T PRK02289 11 GR-SQEQKNALAREVTEVVSRIAKAPKEAIHVFINDMP 47 (60)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeC
Confidence 44 443444444554444322 4555667999999999
No 252
>TIGR03357 VI_zyme type VI secretion system lysozyme-related protein. The description for PFAM family pfam04965 cites acidic lysozyme activity for some phage-encoded members. This family represents a different subgroup of the proteins from pfam04965, where all members are associated with bacterial type VI secretion system genomic contexts.
Probab=23.86 E-value=3.6e+02 Score=21.10 Aligned_cols=30 Identities=10% Similarity=0.304 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhhhccCCCCccEEeeecC
Q 043411 30 SKAWPFLEETIKDMFSSSFPGCFNVADLGC 59 (242)
Q Consensus 30 ~~~~~~l~~ai~~~~~~~~~~~~~IaDlGC 59 (242)
..+..-+.+.+..+..+..+....+.||||
T Consensus 24 ~~l~~sI~~~L~~LLnTr~g~~~~~~~yGl 53 (133)
T TIGR03357 24 EQLRESIRRHLERLLNTRRGSCASLPDYGL 53 (133)
T ss_pred HHHHHHHHHHHHHHHccCCCccccccccCC
Confidence 344455555566666555566789999999
No 253
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=22.32 E-value=1.3e+02 Score=20.24 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411 180 CQAFWEQFQRDFSAFLSLRSEEIVSGG 206 (242)
Q Consensus 180 ~~ay~~q~~~D~~~FL~~Ra~EL~pGG 206 (242)
.+.|-+.|++|-...|++|.+-++..|
T Consensus 22 mkrycrafrqdrdallear~kl~~r~~ 48 (54)
T PF13260_consen 22 MKRYCRAFRQDRDALLEARNKLFRRSG 48 (54)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 478889999999999999998876543
No 254
>PF03445 DUF294: Putative nucleotidyltransferase DUF294; InterPro: IPR005105 This domain is found associated with an N-terminal cyclic nucleotide-binding domain (IPR000595 from INTERPRO) and two CBS domains (IPR000644 from INTERPRO). This domain, normally represents the C-terminal region, is uncharacterised; however, it seems to be similar to the nucleotidyltransferase domain (IPR002934 from INTERPRO), conserving the DXD motif, which strongly suggests that proteins containing this domain are also nucleotidyltransferases.; GO: 0008773 [protein-PII] uridylyltransferase activity
Probab=22.27 E-value=1.3e+02 Score=24.11 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411 177 PSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL 210 (242)
Q Consensus 177 ~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl 210 (242)
.+..++|+.++.+-+...|....-...|||+|+-
T Consensus 80 ~~~~~~~f~~~a~~~~~~L~~~G~~~C~g~vmas 113 (138)
T PF03445_consen 80 SEEDRAYFEAFAERLVDALDECGFPPCPGGVMAS 113 (138)
T ss_pred chhHHHHHHHHHHHHHHHHHHcCCCCCCCCcCcc
Confidence 4567899999999999999999999999999875
No 255
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=21.96 E-value=1.4e+02 Score=26.80 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=20.0
Q ss_pred CCccEEeeecCCCCcchHHHHHHHH
Q 043411 49 PGCFNVADLGCSSGPNTLLVVSKII 73 (242)
Q Consensus 49 ~~~~~IaDlGCs~G~ns~~~~~~ii 73 (242)
.+...++|||||-|..|..+.+.+.
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~ 41 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQ 41 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhh
Confidence 3467999999999999987775553
No 256
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=21.39 E-value=1.2e+02 Score=28.18 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=15.2
Q ss_pred EEeeecCCCCcchHHHHH
Q 043411 53 NVADLGCSSGPNTLLVVS 70 (242)
Q Consensus 53 ~IaDlGCs~G~ns~~~~~ 70 (242)
+|+|+=||.|..|+.+.+
T Consensus 199 ~vlDlycG~G~fsl~la~ 216 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAK 216 (352)
T ss_dssp EEEEES-TTTCCHHHHHC
T ss_pred cEEEEeecCCHHHHHHHh
Confidence 799999999999998764
No 257
>COG4427 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.37 E-value=1.1e+02 Score=28.08 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=15.7
Q ss_pred CCCccEEeeecCCCCcc
Q 043411 48 FPGCFNVADLGCSSGPN 64 (242)
Q Consensus 48 ~~~~~~IaDlGCs~G~n 64 (242)
.+++++|.|+|.|.|-|
T Consensus 138 ~~~Pl~l~EiGsSaGLN 154 (350)
T COG4427 138 FGKPLVLSEIGSSAGLN 154 (350)
T ss_pred cCCCeEEEecccccccc
Confidence 57899999999999999
No 258
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=20.29 E-value=1.2e+02 Score=25.64 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=13.8
Q ss_pred EEeeecCCCCcchHHH
Q 043411 53 NVADLGCSSGPNTLLV 68 (242)
Q Consensus 53 ~IaDlGCs~G~ns~~~ 68 (242)
+|+|+|+|-|-=.+.+
T Consensus 51 ~~lDiGSGaGfPGipL 66 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPL 66 (184)
T ss_dssp EEEEETSTTTTTHHHH
T ss_pred eEEecCCCCCChhHHH
Confidence 8999999999877655
Done!