BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043412
(383 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 13/115 (11%)
Query: 202 RKGWDVLLKAYLEEFS-KADGVVLYLLTNPYHSG-RDFGNKI---VNFVEDSDLEKPDDG 256
RKG D L+KA + + + D +L + + Y S R + V F+ + + +
Sbjct: 210 RKGQDSLIKAMPQVIAARPDAQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINT 269
Query: 257 WAPAADVFVLPSRG-------EGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENG 304
A AAD+F +P+R EG G +EA + G+PVIA G E +T G
Sbjct: 270 LA-AADIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPATG 323
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 13/115 (11%)
Query: 202 RKGWDVLLKAYLEEFS-KADGVVLYLLTNPYHSG-RDFGNKI---VNFVEDSDLEKPDDG 256
RKG D L+KA + + + D +L + + Y S R + V F+ + + +
Sbjct: 210 RKGQDSLIKAMPQVIAARPDAQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINT 269
Query: 257 WAPAADVFVLPSRG-------EGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENG 304
A AAD+F +P+R EG G +EA + G+PVIA G E +T G
Sbjct: 270 LA-AADIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPATG 323
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 23/128 (17%)
Query: 261 ADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTE-ENGYPLLVGRMSEVTEGP 319
+D+ +L S E +G L+EAM+ G+P I T G E + + GY VG + V +
Sbjct: 285 SDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQA 344
Query: 320 FKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAG----IVTDHI 375
+ ++ + + + G++ARE + ++F E + I D +
Sbjct: 345 IQ------------------LLKDEELHRNMGERARESVYEQFRSEKIVSQYETIYYDVL 386
Query: 376 KDILSSKI 383
+D + KI
Sbjct: 387 RDDKNGKI 394
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 23/128 (17%)
Query: 261 ADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTE-ENGYPLLVGRMSEVTEGP 319
+D+ +L S E +G L+EAM+ G+P I T G E + + GY VG + V +
Sbjct: 305 SDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQA 364
Query: 320 FKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAG----IVTDHI 375
+ ++ + + + G++ARE + ++F E + I D +
Sbjct: 365 IQ------------------LLKDEELHRNMGERARESVYEQFRSEKIVSQYETIYYDVL 406
Query: 376 KDILSSKI 383
+D + KI
Sbjct: 407 RDDKNGKI 414
>pdb|2IW1|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 21/117 (17%)
Query: 260 AADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGP 319
AAD+ + P+ E G L+EA++ GLPV+ T G Y+ + N
Sbjct: 270 AADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANC--------------- 314
Query: 320 FKGHFWAEP-SVDKLRALMR--LVVSNVDEAKAKGKQAREDMIQRFS-PETVAGIVT 372
G AEP S ++L ++R L S + A A+ + D +S PE A I+T
Sbjct: 315 --GTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIIT 369
>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 263 VFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYL 299
FV P+ E +G +VEAM+ GLP AT GP E +
Sbjct: 667 AFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEII 703
>pdb|3OY2|A Chain A, Crystal Structure Of A Putative Glycosyltransferase From
Paramecium Bursaria Chlorella Virus Ny2a
pdb|3OY2|B Chain B, Crystal Structure Of A Putative Glycosyltransferase From
Paramecium Bursaria Chlorella Virus Ny2a
pdb|3OY7|A Chain A, Crystal Structure Of A Virus Encoded Glycosyltransferase
In Complex With Gdp-Mannose
pdb|3OY7|B Chain B, Crystal Structure Of A Virus Encoded Glycosyltransferase
In Complex With Gdp-Mannose
Length = 413
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 26/154 (16%)
Query: 175 GKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYH-- 232
+ ++GLS N + +FL++ + RK D+ + A SK + L N +H
Sbjct: 172 ARKLVGLSEYN---DDVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHES 228
Query: 233 --------------SGRD----FGNKI-VNFVEDSDLEKPDDGWAPAADVFVLPSRGEGW 273
SG D NKI +N +D E+ D + A DV V S GEG+
Sbjct: 229 KFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTD-ERVDMMY-NACDVIVNCSSGEGF 286
Query: 274 GRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPL 307
G E +G P+I + G +Y + + Y +
Sbjct: 287 GLCSAEGAVLGKPLIISAVGGADDYFSGDCVYKI 320
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 258 APAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYL 299
A VF L S E +G VEAM+ GLP + T GP E L
Sbjct: 356 ASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEIL 397
>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 263 VFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYL 299
FV P+ E +G +VEA + GLP AT GP E +
Sbjct: 667 AFVQPALYEAFGLTVVEAXTCGLPTFATCKGGPAEII 703
>pdb|3VSG|B Chain B, Crystal Structure Of Iron Free 1,6-apd,
2-animophenol-1,6-dioxygenase
pdb|3VSG|D Chain D, Crystal Structure Of Iron Free 1,6-apd,
2-animophenol-1,6-dioxygenase
pdb|3VSH|B Chain B, Crystal Structure Of Native 1,6-apd (with Iron),
2-animophenol-1,6- Dioxygenase
pdb|3VSH|D Chain D, Crystal Structure Of Native 1,6-apd (with Iron),
2-animophenol-1,6- Dioxygenase
pdb|3VSI|B Chain B, Crystal Structure Of Native 1,6-apd
(2-animophenol-1,6-dioxygenase) Complex With
4-nitrocatechol
pdb|3VSI|D Chain D, Crystal Structure Of Native 1,6-apd
(2-animophenol-1,6-dioxygenase) Complex With
4-nitrocatechol
pdb|3VSJ|B Chain B, Crystal Structure Of 1,6-apd
(2-animophenol-1,6-dioxygenase) Complexed With
Intermediate Products
pdb|3VSJ|D Chain D, Crystal Structure Of 1,6-apd
(2-animophenol-1,6-dioxygenase) Complexed With
Intermediate Products
Length = 312
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 171 LASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNP 230
+ S+G LG+ ++ S + +F +VF++++ DV L E + G+V ++ NP
Sbjct: 64 ITSVGHHFLGVPELSGKSVDPIFPNVFRYDFSLNVDVELAEACAEEGRKAGLVTKMMRNP 123
>pdb|3NB0|A Chain A, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3NB0|B Chain B, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3NB0|C Chain C, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3NB0|D Chain D, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3RT1|A Chain A, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
pdb|3RT1|B Chain B, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
pdb|3RT1|C Chain C, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
pdb|3RT1|D Chain D, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
Length = 725
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 255 DGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTE 301
D + + V PS E WG E MG+P I TN SG Y+ +
Sbjct: 513 DEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGSYMED 559
>pdb|3NAZ|A Chain A, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|B Chain B, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|C Chain C, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|D Chain D, Basal State Form Of Yeast Glycogen Synthase
pdb|3NCH|A Chain A, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|B Chain B, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|C Chain C, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|D Chain D, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3O3C|A Chain A, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|B Chain B, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|C Chain C, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|D Chain D, Glycogen Synthase Basal State Udp Complex
pdb|3RSZ|A Chain A, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|B Chain B, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|C Chain C, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|D Chain D, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
Length = 725
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 255 DGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTE 301
D + + V PS E WG E MG+P I TN SG Y+ +
Sbjct: 513 DEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGSYMED 559
>pdb|2IV7|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 21/110 (19%)
Query: 267 PSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWA 326
P+ E G L+EA++ GLPV+ T G Y+ + N G A
Sbjct: 277 PAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANC-----------------GTVIA 319
Query: 327 EP-SVDKLRALMR--LVVSNVDEAKAKGKQAREDMIQRFS-PETVAGIVT 372
EP S ++L ++R L S + A A+ + D +S PE A I+T
Sbjct: 320 EPFSQEQLNEVLRKALTQSPLRXAWAENARHYADTQDLYSLPEKAADIIT 369
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%)
Query: 260 AADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGP 319
+ D ++PS E +G +EAM +G IA+ G + +T E G + G E+
Sbjct: 115 SVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNETGILVKAGDPGELANAI 174
Query: 320 FKGHFWAEPSVDKLR 334
K + + K R
Sbjct: 175 LKALELSRSDLSKFR 189
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%)
Query: 260 AADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGP 319
+ D ++PS E +G +EAM +G IA+ G + +T E G + G E+
Sbjct: 330 SVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNETGILVKAGDPGELANAI 389
Query: 320 FKGHFWAEPSVDKLR 334
K + + K R
Sbjct: 390 LKALELSRSDLSKFR 404
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%)
Query: 260 AADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGP 319
+ D ++PS E +G +EAM +G IA+ G + +T E G + G E+
Sbjct: 331 SVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNETGILVKAGDPGELANAI 390
Query: 320 FKGHFWAEPSVDKLR 334
K + + K R
Sbjct: 391 LKALELSRSDLSKFR 405
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%)
Query: 260 AADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGP 319
+ D ++PS E +G +EAM +G IA+ G + +T E G + G E+
Sbjct: 330 SVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNETGILVKAGDPGELANAI 389
Query: 320 FKGHFWAEPSVDKLR 334
K + + K R
Sbjct: 390 LKALELSRSDLSKFR 404
>pdb|3PSA|A Chain A, Classification Of A Haemophilus Influenzae Abc Transporter
Hi147071 Through Its Cognate Molybdate Periplasmic
Binding Protein Mola (Mola Bound To Tungstate)
pdb|3PSH|A Chain A, Classification Of A Haemophilus Influenzae Abc Transporter
Hi147071 Through Its Cognate Molybdate Periplasmic
Binding Protein Mola (Mola Bound To Molybdate)
Length = 326
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 254 DDGWA-----PAADVFVLPSRGEGWGRPLVEAMSMG 284
D GWA VF++P + WG P+ EA+++G
Sbjct: 254 DQGWANIQALKDKKVFLMPEYAKAWGYPMPEALALG 289
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 260 AADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSG 294
AAD+ +PS E +G +EA + G PVIA G
Sbjct: 305 AADIVAVPSFNESFGLVAMEAQASGTPVIAARVGG 339
>pdb|4AI5|A Chain A, Crystal Structure Of Y16f Of 3-Methyladenine Dna
Glycosylase I (Tag) In Complex With 3-Methyladenine
pdb|4AI5|B Chain B, Crystal Structure Of Y16f Of 3-Methyladenine Dna
Glycosylase I (Tag) In Complex With 3-Methyladenine
pdb|4AI5|C Chain C, Crystal Structure Of Y16f Of 3-Methyladenine Dna
Glycosylase I (Tag) In Complex With 3-Methyladenine
pdb|4AI5|D Chain D, Crystal Structure Of Y16f Of 3-Methyladenine Dna
Glycosylase I (Tag) In Complex With 3-Methyladenine
pdb|4AI5|E Chain E, Crystal Structure Of Y16f Of 3-Methyladenine Dna
Glycosylase I (Tag) In Complex With 3-Methyladenine
Length = 188
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 14/84 (16%)
Query: 310 GRMSEVTEGP-------FKGHFWAEPSVDKLRALMRLVVSNVDEAKA------KGKQARE 356
G M+E G F H W +P D +AL +L+ A K K+A E
Sbjct: 1 GAMNECAFGTKDPVYLNFHDHVWGQPLYDS-KALFKLLALESQHAGLSWLTILKKKEAYE 59
Query: 357 DMIQRFSPETVAGIVTDHIKDILS 380
+ F PE VA + I +++
Sbjct: 60 EAFYDFEPEKVAQMTAQDIDRLMT 83
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 260 AADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSG 294
AAD+ +PS E +G +EA + G PVIA G
Sbjct: 325 AADIVAVPSFNESFGLVAMEAQASGTPVIAARVGG 359
>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
Length = 416
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 75/175 (42%), Gaps = 20/175 (11%)
Query: 134 FHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVF 193
FH+ +++ +D K V + P + DP++ ++L + + L + ++ +
Sbjct: 181 FHLPEYVQPELDRNKAV--IMPPSI---DPLSEKNVELKQT-EILRILERFDVDPEKPII 234
Query: 194 LSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRD----FGNKIVNFVEDSD 249
V +++ KG +++ Y + K GV L L+ H + F + ED D
Sbjct: 235 TQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYD 294
Query: 250 LE----------KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSG 294
++ + + + A+DV + S EG+G + EAM G PVI G
Sbjct: 295 VKVLTNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTEAMWKGKPVIGRAVGG 349
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,338,602
Number of Sequences: 62578
Number of extensions: 544443
Number of successful extensions: 1018
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 998
Number of HSP's gapped (non-prelim): 25
length of query: 383
length of database: 14,973,337
effective HSP length: 101
effective length of query: 282
effective length of database: 8,652,959
effective search space: 2440134438
effective search space used: 2440134438
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)