Query 043412
Match_columns 383
No_of_seqs 236 out of 2271
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 04:47:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043412.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043412hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03088 stp2 sugar transfera 100.0 2E-40 4.4E-45 307.0 26.3 340 2-379 8-374 (374)
2 cd03796 GT1_PIG-A_like This fa 100.0 6.8E-39 1.5E-43 298.7 27.0 326 7-381 13-371 (398)
3 PRK15427 colanic acid biosynth 100.0 1.5E-39 3.2E-44 302.0 22.2 268 63-377 113-405 (406)
4 TIGR03449 mycothiol_MshA UDP-N 100.0 2.2E-38 4.7E-43 296.5 24.0 345 6-380 18-404 (405)
5 PRK00654 glgA glycogen synthas 100.0 1.9E-38 4E-43 300.3 23.4 241 121-381 194-466 (466)
6 PRK14099 glycogen synthase; Pr 100.0 3.8E-38 8.3E-43 297.2 23.6 242 119-381 204-482 (485)
7 cd04962 GT1_like_5 This family 100.0 3.3E-37 7.1E-42 285.3 27.8 334 7-378 11-371 (371)
8 PLN02316 synthase/transferase 100.0 2.4E-37 5.3E-42 304.1 27.4 364 1-380 597-1036(1036)
9 PLN02871 UDP-sulfoquinovose:DA 100.0 7.9E-38 1.7E-42 296.6 22.8 338 2-380 68-437 (465)
10 TIGR02472 sucr_P_syn_N sucrose 100.0 8.8E-38 1.9E-42 293.9 22.9 231 121-376 181-439 (439)
11 PLN02939 transferase, transfer 100.0 5.3E-37 1.1E-41 296.5 28.6 245 121-381 690-970 (977)
12 PRK15490 Vi polysaccharide bio 100.0 2.3E-37 4.9E-42 285.3 23.2 295 45-377 257-575 (578)
13 TIGR02095 glgA glycogen/starch 100.0 4.2E-37 9.2E-42 292.4 21.4 239 120-378 201-473 (473)
14 PRK10307 putative glycosyl tra 100.0 4.5E-37 9.8E-42 288.0 20.9 228 122-382 169-412 (412)
15 PRK15179 Vi polysaccharide bio 100.0 2.6E-36 5.7E-41 291.0 25.3 290 53-376 385-692 (694)
16 cd03792 GT1_Trehalose_phosphor 100.0 1.6E-36 3.4E-41 280.6 22.9 336 3-378 7-372 (372)
17 PRK14098 glycogen synthase; Pr 100.0 9.2E-37 2E-41 288.1 21.7 239 120-380 216-488 (489)
18 PRK15484 lipopolysaccharide 1, 100.0 8.1E-36 1.8E-40 275.4 26.8 227 122-379 137-379 (380)
19 cd03819 GT1_WavL_like This fam 100.0 2.9E-36 6.3E-41 277.3 23.3 327 2-367 4-355 (355)
20 TIGR02149 glgA_Coryne glycogen 100.0 3.8E-36 8.2E-41 279.9 23.9 226 121-379 141-388 (388)
21 cd03807 GT1_WbnK_like This fam 100.0 8.1E-36 1.8E-40 274.3 24.0 336 2-376 6-365 (365)
22 PRK09922 UDP-D-galactose:(gluc 100.0 7.4E-36 1.6E-40 274.4 22.4 324 2-380 7-358 (359)
23 cd03813 GT1_like_3 This family 100.0 5.1E-36 1.1E-40 284.4 20.6 219 122-376 242-475 (475)
24 TIGR02468 sucrsPsyn_pln sucros 100.0 1.8E-35 3.9E-40 290.1 24.5 239 122-380 379-673 (1050)
25 cd04951 GT1_WbdM_like This fam 100.0 2.6E-35 5.6E-40 271.4 24.0 334 3-377 7-360 (360)
26 cd05844 GT1_like_7 Glycosyltra 100.0 3.3E-35 7.2E-40 271.5 23.5 210 121-373 139-366 (367)
27 PRK10125 putative glycosyl tra 100.0 5.3E-35 1.1E-39 270.6 24.0 324 5-378 10-405 (405)
28 cd03800 GT1_Sucrose_synthase T 100.0 8.2E-35 1.8E-39 271.8 25.4 338 7-372 20-397 (398)
29 TIGR02470 sucr_synth sucrose s 100.0 1.2E-34 2.6E-39 279.1 26.3 232 121-375 449-745 (784)
30 cd03818 GT1_ExpC_like This fam 100.0 8.1E-35 1.8E-39 271.2 23.6 223 121-372 153-395 (396)
31 cd03812 GT1_CapH_like This fam 100.0 6E-35 1.3E-39 268.8 22.5 317 2-359 6-347 (358)
32 cd03822 GT1_ecORF704_like This 100.0 3.7E-34 8.1E-39 263.9 27.3 340 1-376 5-366 (366)
33 cd03799 GT1_amsK_like This is 100.0 3.8E-34 8.3E-39 263.1 25.0 322 2-370 6-354 (355)
34 cd03791 GT1_Glycogen_synthase_ 100.0 8.4E-35 1.8E-39 277.7 20.3 239 119-377 205-476 (476)
35 cd03805 GT1_ALG2_like This fam 100.0 4.9E-34 1.1E-38 266.1 24.3 220 122-371 152-392 (392)
36 TIGR02918 accessory Sec system 100.0 3.1E-33 6.7E-38 263.7 25.3 218 122-378 268-500 (500)
37 PHA01630 putative group 1 glyc 100.0 3.8E-33 8.2E-38 250.6 23.7 241 112-377 80-330 (331)
38 PLN02949 transferase, transfer 100.0 2.7E-32 6E-37 254.9 29.5 221 122-381 218-460 (463)
39 cd03820 GT1_amsD_like This fam 100.0 7.2E-33 1.6E-37 252.8 25.1 313 7-372 12-347 (348)
40 cd03825 GT1_wcfI_like This fam 100.0 2.6E-33 5.5E-38 258.6 22.1 322 3-378 8-365 (365)
41 cd03809 GT1_mtfB_like This fam 100.0 2.7E-33 5.9E-38 258.1 21.1 326 7-372 14-364 (365)
42 cd03795 GT1_like_4 This family 100.0 8.1E-33 1.8E-37 254.5 23.7 318 2-368 6-357 (357)
43 cd03801 GT1_YqgM_like This fam 100.0 1.8E-32 3.9E-37 251.9 25.1 328 7-376 13-374 (374)
44 cd03808 GT1_cap1E_like This fa 100.0 4.4E-33 9.6E-38 255.3 21.0 325 7-372 9-358 (359)
45 PLN00142 sucrose synthase 100.0 5.1E-33 1.1E-37 267.9 22.1 236 122-375 473-768 (815)
46 TIGR03087 stp1 sugar transfera 100.0 3.7E-32 7.9E-37 253.3 26.8 215 122-376 170-395 (397)
47 cd03798 GT1_wlbH_like This fam 100.0 4.1E-32 9E-37 250.2 25.9 335 2-378 5-377 (377)
48 cd03821 GT1_Bme6_like This fam 100.0 2.7E-32 5.9E-37 251.7 24.6 217 122-372 147-374 (375)
49 cd03802 GT1_AviGT4_like This f 100.0 4.7E-32 1E-36 247.2 25.3 298 6-376 17-335 (335)
50 cd03811 GT1_WabH_like This fam 100.0 3.6E-32 7.9E-37 248.5 24.2 321 2-363 6-352 (353)
51 cd03806 GT1_ALG11_like This fa 100.0 3.2E-32 6.9E-37 254.0 23.6 210 122-369 187-418 (419)
52 KOG1111 N-acetylglucosaminyltr 100.0 1.3E-33 2.9E-38 239.9 10.8 330 1-382 6-371 (426)
53 cd04955 GT1_like_6 This family 100.0 8.2E-32 1.8E-36 248.4 23.5 210 122-376 141-363 (363)
54 cd03814 GT1_like_2 This family 100.0 2.4E-32 5.2E-37 251.6 18.4 328 8-376 14-364 (364)
55 PLN02846 digalactosyldiacylgly 100.0 4.6E-32 9.9E-37 249.6 19.4 267 57-376 105-390 (462)
56 cd03823 GT1_ExpE7_like This fa 100.0 1.5E-31 3.3E-36 245.7 22.0 315 6-376 13-358 (359)
57 cd03816 GT1_ALG1_like This fam 100.0 1.8E-31 3.8E-36 249.2 21.7 216 122-371 158-410 (415)
58 cd04946 GT1_AmsK_like This fam 100.0 4.2E-31 9.1E-36 246.1 23.1 210 121-372 180-406 (407)
59 cd04949 GT1_gtfA_like This fam 100.0 6.4E-31 1.4E-35 243.4 22.5 209 120-371 153-372 (372)
60 cd03817 GT1_UGDG_like This fam 100.0 1.7E-30 3.8E-35 239.7 25.0 330 6-377 12-373 (374)
61 cd03794 GT1_wbuB_like This fam 100.0 9.8E-31 2.1E-35 242.7 21.2 216 121-371 162-393 (394)
62 PHA01633 putative glycosyl tra 100.0 2.6E-30 5.7E-35 229.3 15.0 240 117-373 85-335 (335)
63 PLN02501 digalactosyldiacylgly 100.0 2E-29 4.3E-34 235.4 18.1 266 57-375 423-707 (794)
64 cd03804 GT1_wbaZ_like This fam 100.0 6.8E-28 1.5E-32 221.3 20.6 192 122-371 151-350 (351)
65 PLN02275 transferase, transfer 100.0 2.5E-27 5.5E-32 218.3 20.4 176 122-341 163-371 (371)
66 cd03793 GT1_Glycogen_synthase_ 100.0 3.2E-27 6.9E-32 218.4 20.6 245 122-381 224-590 (590)
67 PRK05749 3-deoxy-D-manno-octul 100.0 1.3E-27 2.8E-32 224.7 15.6 325 7-381 59-423 (425)
68 TIGR02400 trehalose_OtsA alpha 100.0 1.4E-27 3E-32 222.7 15.0 278 69-375 128-454 (456)
69 cd03788 GT1_TPS Trehalose-6-Ph 99.9 1.4E-27 3.1E-32 224.5 11.4 277 68-374 131-458 (460)
70 COG0297 GlgA Glycogen synthase 99.9 4.4E-25 9.5E-30 203.5 23.0 246 118-381 202-481 (487)
71 PLN02605 monogalactosyldiacylg 99.9 9.6E-25 2.1E-29 202.0 16.7 215 122-375 148-379 (382)
72 PRK00726 murG undecaprenyldiph 99.9 1.2E-24 2.5E-29 200.2 16.5 260 54-376 77-356 (357)
73 PLN03063 alpha,alpha-trehalose 99.9 2E-24 4.4E-29 213.4 14.5 285 70-380 149-480 (797)
74 PF00534 Glycos_transf_1: Glyc 99.9 8.6E-24 1.9E-28 173.8 12.5 149 186-357 11-172 (172)
75 PRK13609 diacylglycerol glucos 99.9 4.6E-23 9.9E-28 191.2 18.9 265 58-377 94-371 (380)
76 KOG0853 Glycosyltransferase [C 99.9 7.3E-23 1.6E-27 185.9 19.1 232 122-379 207-469 (495)
77 TIGR01133 murG undecaprenyldip 99.9 6.1E-23 1.3E-27 188.3 17.9 302 4-369 4-346 (348)
78 cd03785 GT1_MurG MurG is an N- 99.9 1.6E-22 3.4E-27 185.7 19.3 253 57-369 78-349 (350)
79 PRK13608 diacylglycerol glucos 99.9 1.2E-22 2.6E-27 188.3 16.8 274 58-380 94-374 (391)
80 PRK14501 putative bifunctional 99.9 1.7E-23 3.6E-28 207.5 11.2 284 69-380 134-465 (726)
81 cd04950 GT1_like_1 Glycosyltra 99.9 2.7E-22 5.7E-27 185.2 14.0 216 118-377 147-371 (373)
82 PRK00025 lpxB lipid-A-disaccha 99.9 2.3E-20 5E-25 173.2 18.5 338 4-381 5-377 (380)
83 TIGR02398 gluc_glyc_Psyn gluco 99.8 9.6E-20 2.1E-24 169.1 15.5 279 69-376 133-481 (487)
84 TIGR00236 wecB UDP-N-acetylglu 99.8 3.3E-20 7.1E-25 171.1 12.1 255 54-354 72-345 (365)
85 COG0438 RfaG Glycosyltransfera 99.8 1.6E-17 3.5E-22 151.6 23.3 217 124-381 150-380 (381)
86 cd01635 Glycosyltransferase_GT 99.8 1.5E-18 3.3E-23 148.9 14.8 108 195-307 109-229 (229)
87 PRK09814 beta-1,6-galactofuran 99.8 2.7E-18 6E-23 155.8 15.4 252 57-370 52-324 (333)
88 cd03786 GT1_UDP-GlcNAc_2-Epime 99.8 4.8E-19 1E-23 163.4 10.5 269 54-374 74-361 (363)
89 KOG1387 Glycosyltransferase [C 99.8 4.5E-17 9.8E-22 138.7 16.6 217 123-381 221-462 (465)
90 PLN03064 alpha,alpha-trehalose 99.7 1.5E-17 3.2E-22 164.2 14.5 282 70-379 233-563 (934)
91 TIGR00215 lpxB lipid-A-disacch 99.7 4.7E-17 1E-21 150.1 14.8 323 5-363 10-370 (385)
92 TIGR03713 acc_sec_asp1 accesso 99.7 1.6E-16 3.4E-21 150.4 17.1 206 120-375 268-519 (519)
93 PF13692 Glyco_trans_1_4: Glyc 99.7 4E-17 8.7E-22 128.3 4.7 130 190-343 2-135 (135)
94 TIGR02094 more_P_ylases alpha- 99.6 9.7E-15 2.1E-19 140.0 16.1 249 121-375 259-598 (601)
95 PF13524 Glyco_trans_1_2: Glyc 99.6 1.4E-14 3E-19 105.5 9.4 91 263-373 1-92 (92)
96 COG1519 KdtA 3-deoxy-D-manno-o 99.5 3.4E-13 7.4E-18 119.9 16.2 307 7-361 58-404 (419)
97 PF05693 Glycogen_syn: Glycoge 99.5 7.4E-14 1.6E-18 129.4 11.1 245 122-381 219-585 (633)
98 KOG2941 Beta-1,4-mannosyltrans 99.5 3.1E-12 6.7E-17 109.6 17.2 282 62-373 97-437 (444)
99 TIGR02919 accessory Sec system 99.5 2.1E-12 4.5E-17 119.7 17.2 179 122-356 237-424 (438)
100 PRK10117 trehalose-6-phosphate 99.5 4.5E-13 9.8E-18 123.6 11.0 282 69-379 124-455 (474)
101 cd04299 GT1_Glycogen_Phosphory 99.4 3.5E-12 7.6E-17 124.7 13.9 185 186-376 474-688 (778)
102 COG0707 MurG UDP-N-acetylgluco 99.4 2.6E-11 5.6E-16 109.4 18.3 252 54-357 77-338 (357)
103 PF00982 Glyco_transf_20: Glyc 99.4 5.6E-13 1.2E-17 124.5 7.6 282 68-376 141-473 (474)
104 TIGR03492 conserved hypothetic 99.4 3.2E-11 7E-16 111.6 17.6 206 122-370 158-391 (396)
105 COG0380 OtsA Trehalose-6-phosp 99.4 1.7E-11 3.6E-16 112.7 14.3 280 70-377 149-479 (486)
106 PLN02205 alpha,alpha-trehalose 99.3 7E-12 1.5E-16 124.9 11.7 283 70-379 203-553 (854)
107 PRK12446 undecaprenyldiphospho 99.3 3.6E-11 7.9E-16 109.6 14.9 263 56-376 79-350 (352)
108 PF13439 Glyco_transf_4: Glyco 99.3 1.9E-12 4.1E-17 106.4 5.8 151 3-162 7-177 (177)
109 PF02684 LpxB: Lipid-A-disacch 99.3 3.7E-11 8E-16 108.5 13.5 307 11-353 11-350 (373)
110 COG0381 WecB UDP-N-acetylgluco 99.2 5.9E-10 1.3E-14 98.7 16.1 313 16-378 21-371 (383)
111 COG0763 LpxB Lipid A disacchar 99.1 5E-10 1.1E-14 98.9 11.3 267 55-354 72-355 (381)
112 PF13844 Glyco_transf_41: Glyc 99.1 6.2E-09 1.3E-13 96.0 17.6 175 184-378 279-467 (468)
113 PRK01021 lpxB lipid-A-disaccha 99.0 4.6E-09 1E-13 99.1 13.8 271 54-361 296-588 (608)
114 COG3914 Spy Predicted O-linked 98.9 2.6E-07 5.7E-12 85.3 20.9 178 186-381 426-617 (620)
115 PF13579 Glyco_trans_4_4: Glyc 98.9 3.7E-11 8E-16 96.9 -3.7 140 8-155 1-160 (160)
116 TIGR03568 NeuC_NnaA UDP-N-acet 98.8 1.6E-08 3.4E-13 92.9 10.0 266 55-374 80-364 (365)
117 COG4641 Uncharacterized protei 98.8 3.4E-07 7.3E-12 80.8 17.2 212 122-378 136-362 (373)
118 PF02350 Epimerase_2: UDP-N-ac 98.8 5E-09 1.1E-13 95.1 4.2 275 54-376 53-346 (346)
119 KOG3742 Glycogen synthase [Car 98.5 4.6E-07 1E-11 80.8 8.9 111 256-379 496-614 (692)
120 PRK14089 ipid-A-disaccharide s 98.5 1.1E-06 2.4E-11 79.3 10.2 179 67-292 75-262 (347)
121 TIGR03590 PseG pseudaminic aci 98.4 1.2E-06 2.6E-11 77.3 9.7 92 190-293 171-269 (279)
122 PF04007 DUF354: Protein of un 98.3 1.4E-05 3E-10 71.7 13.9 223 56-341 71-308 (335)
123 PRK02797 4-alpha-L-fucosyltran 98.2 0.0003 6.4E-09 61.2 17.9 268 57-381 28-320 (322)
124 TIGR01426 MGT glycosyltransfer 98.1 3.5E-05 7.5E-10 71.9 12.5 100 255-375 286-390 (392)
125 PF13528 Glyco_trans_1_3: Glyc 98.0 1.3E-05 2.9E-10 72.4 7.3 93 188-298 191-284 (318)
126 COG1817 Uncharacterized protei 98.0 0.00058 1.3E-08 59.0 15.7 233 55-345 71-316 (346)
127 TIGR00661 MJ1255 conserved hyp 97.9 1.6E-05 3.5E-10 72.0 5.6 92 189-297 188-280 (321)
128 PF04464 Glyphos_transf: CDP-G 97.9 0.00019 4.2E-09 66.4 12.4 226 117-375 127-367 (369)
129 PF09314 DUF1972: Domain of un 97.9 6.5E-05 1.4E-09 61.0 8.1 140 7-157 16-185 (185)
130 PF07429 Glyco_transf_56: 4-al 97.8 0.0032 6.8E-08 55.7 18.2 265 58-379 68-357 (360)
131 cd03784 GT1_Gtf_like This fami 97.7 0.00023 5.1E-09 66.6 10.5 150 188-369 238-396 (401)
132 PRK10017 colanic acid biosynth 97.5 0.051 1.1E-06 51.0 22.4 204 120-353 172-402 (426)
133 PF04101 Glyco_tran_28_C: Glyc 97.5 7.1E-07 1.5E-11 72.6 -8.7 94 248-354 60-155 (167)
134 PHA03392 egt ecdysteroid UDP-g 97.5 0.0023 4.9E-08 61.5 13.7 130 189-356 296-445 (507)
135 COG1819 Glycosyl transferases, 97.5 0.002 4.3E-08 60.1 12.5 160 188-376 236-400 (406)
136 KOG4626 O-linked N-acetylgluco 97.3 0.0084 1.8E-07 56.7 13.7 171 184-380 753-943 (966)
137 PF06925 MGDG_synth: Monogalac 97.3 0.00054 1.2E-08 55.7 5.4 86 57-155 78-168 (169)
138 KOG1050 Trehalose-6-phosphate 97.2 0.008 1.7E-07 59.5 13.7 234 115-373 187-470 (732)
139 PF08323 Glyco_transf_5: Starc 97.2 9.8E-05 2.1E-09 63.9 0.6 27 1-27 9-35 (245)
140 PF13477 Glyco_trans_4_2: Glyc 97.1 0.001 2.2E-08 52.0 5.2 114 10-132 9-139 (139)
141 PF00201 UDPGT: UDP-glucoronos 97.0 0.00098 2.1E-08 64.4 5.6 137 188-350 275-416 (500)
142 PLN02670 transferase, transfer 97.0 0.022 4.8E-07 54.1 14.0 175 188-381 277-469 (472)
143 COG0058 GlgP Glucan phosphoryl 96.8 0.015 3.3E-07 57.1 11.7 127 184-310 481-631 (750)
144 PLN02208 glycosyltransferase f 96.5 0.054 1.2E-06 51.1 12.6 152 188-356 250-415 (442)
145 PLN02764 glycosyltransferase f 96.5 0.075 1.6E-06 50.2 13.3 178 187-380 255-448 (453)
146 PLN00414 glycosyltransferase f 96.4 0.068 1.5E-06 50.6 13.0 154 187-356 250-416 (446)
147 PF04413 Glycos_transf_N: 3-De 96.4 0.0027 5.9E-08 52.2 3.1 141 8-154 31-179 (186)
148 PLN02448 UDP-glycosyltransfera 96.4 0.046 1E-06 52.1 11.8 144 188-355 273-428 (459)
149 COG4671 Predicted glycosyl tra 96.3 0.048 1E-06 48.4 10.3 183 123-344 166-366 (400)
150 PLN03007 UDP-glucosyltransfera 96.3 0.11 2.3E-06 49.9 13.8 142 188-344 284-441 (482)
151 PRK14986 glycogen phosphorylas 96.3 0.02 4.2E-07 57.0 8.7 125 184-309 537-695 (815)
152 PLN03004 UDP-glycosyltransfera 96.0 0.071 1.5E-06 50.4 10.7 140 188-347 269-428 (451)
153 PLN00164 glucosyltransferase; 95.7 0.24 5.3E-06 47.4 13.2 87 256-355 351-444 (480)
154 PRK14985 maltodextrin phosphor 95.7 0.041 8.9E-07 54.6 8.0 125 184-309 523-681 (798)
155 PLN02554 UDP-glycosyltransfera 95.7 0.12 2.6E-06 49.5 10.9 73 271-348 367-446 (481)
156 PF15024 Glyco_transf_18: Glyc 95.6 0.071 1.5E-06 50.6 8.6 157 200-377 288-455 (559)
157 COG3660 Predicted nucleoside-d 95.5 0.92 2E-05 38.8 14.1 147 123-293 108-274 (329)
158 PLN02863 UDP-glucoronosyl/UDP- 95.5 0.49 1.1E-05 45.3 14.3 137 188-346 282-437 (477)
159 PF00343 Phosphorylase: Carboh 95.5 0.19 4E-06 49.6 11.4 187 122-309 329-596 (713)
160 PLN02562 UDP-glycosyltransfera 95.5 0.31 6.8E-06 46.2 12.8 136 189-349 273-419 (448)
161 cd04300 GT1_Glycogen_Phosphory 95.4 0.073 1.6E-06 53.2 8.5 125 184-309 524-682 (797)
162 PF06258 Mito_fiss_Elm1: Mitoc 95.3 0.26 5.5E-06 44.2 11.1 101 189-294 146-259 (311)
163 PLN02992 coniferyl-alcohol glu 95.3 0.25 5.5E-06 47.1 11.6 60 271-344 363-428 (481)
164 PF12000 Glyco_trans_4_3: Gkyc 95.3 0.017 3.8E-07 46.4 3.3 38 122-161 133-170 (171)
165 PLN02210 UDP-glucosyl transfer 95.3 0.62 1.3E-05 44.3 14.3 140 188-345 268-417 (456)
166 PLN02410 UDP-glucoronosyl/UDP- 95.3 0.44 9.4E-06 45.3 13.0 136 188-345 263-412 (451)
167 PLN02152 indole-3-acetate beta 95.2 0.49 1.1E-05 44.9 13.1 62 271-345 352-419 (455)
168 TIGR02093 P_ylase glycogen/sta 94.9 0.13 2.7E-06 51.4 8.5 125 184-309 521-679 (794)
169 PF05159 Capsule_synth: Capsul 94.9 0.15 3.3E-06 44.8 8.4 85 204-293 138-227 (269)
170 PLN02207 UDP-glycosyltransfera 94.8 0.79 1.7E-05 43.7 13.4 138 188-342 274-425 (468)
171 PLN02167 UDP-glycosyltransfera 94.7 0.98 2.1E-05 43.3 13.9 81 272-361 366-456 (475)
172 PLN02173 UDP-glucosyl transfer 94.2 1.3 2.8E-05 42.0 13.3 85 256-355 329-419 (449)
173 PLN02555 limonoid glucosyltran 94.0 1.5 3.4E-05 41.9 13.4 74 271-356 362-441 (480)
174 COG0859 RfaF ADP-heptose:LPS h 93.8 1.4 2.9E-05 40.2 12.4 93 190-294 176-280 (334)
175 COG3980 spsG Spore coat polysa 93.8 0.46 1E-05 41.0 8.4 135 190-353 159-303 (318)
176 PLN02534 UDP-glycosyltransfera 93.1 5.7 0.00012 38.2 15.6 81 256-342 356-443 (491)
177 PF12996 DUF3880: DUF based on 92.9 0.41 9E-06 33.1 5.8 46 120-167 14-59 (79)
178 TIGR03609 S_layer_CsaB polysac 92.5 2.7 5.9E-05 37.5 12.1 149 118-292 121-277 (298)
179 PF04230 PS_pyruv_trans: Polys 92.4 6.7 0.00015 34.0 15.7 154 116-292 119-284 (286)
180 TIGR02193 heptsyl_trn_I lipopo 92.4 2.3 5E-05 38.3 11.7 130 188-341 178-319 (319)
181 COG1887 TagB Putative glycosyl 92.0 3.1 6.8E-05 38.6 12.0 224 122-375 146-384 (388)
182 PLN03015 UDP-glucosyl transfer 91.3 4.6 0.0001 38.5 12.5 59 272-342 361-425 (470)
183 KOG2884 26S proteasome regulat 91.0 8.2 0.00018 32.0 12.2 124 189-345 107-231 (259)
184 cd03789 GT1_LPS_heptosyltransf 90.5 1.3 2.9E-05 39.0 7.9 97 190-298 122-231 (279)
185 PF01075 Glyco_transf_9: Glyco 89.8 1.5 3.3E-05 37.8 7.5 101 188-298 104-216 (247)
186 PF08660 Alg14: Oligosaccharid 89.6 0.73 1.6E-05 37.3 4.9 74 58-139 82-161 (170)
187 PRK10964 ADP-heptose:LPS hepto 89.1 7.3 0.00016 35.2 11.7 96 190-296 179-284 (322)
188 PRK10422 lipopolysaccharide co 89.0 1.2 2.7E-05 40.8 6.6 101 189-296 183-293 (352)
189 TIGR02195 heptsyl_trn_II lipop 88.0 2.6 5.6E-05 38.3 8.0 100 189-297 174-283 (334)
190 PF03016 Exostosin: Exostosin 87.1 0.78 1.7E-05 41.0 4.1 47 254-300 230-279 (302)
191 PF10087 DUF2325: Uncharacteri 87.0 2.7 5.8E-05 30.3 6.1 41 254-294 42-85 (97)
192 PF10933 DUF2827: Protein of u 86.5 20 0.00043 32.6 12.2 312 7-364 17-350 (364)
193 COG3414 SgaB Phosphotransferas 86.4 1.7 3.7E-05 31.1 4.6 46 224-269 5-58 (93)
194 TIGR02201 heptsyl_trn_III lipo 85.2 3.4 7.4E-05 37.7 7.3 101 189-296 181-291 (344)
195 COG1927 Mtd Coenzyme F420-depe 84.5 22 0.00047 29.4 14.2 105 191-308 5-115 (277)
196 smart00672 CAP10 Putative lipo 83.9 14 0.0003 32.2 10.0 47 331-377 202-248 (256)
197 COG2327 WcaK Polysaccharide py 83.0 39 0.00084 31.2 23.2 187 122-347 150-355 (385)
198 COG4370 Uncharacterized protei 80.8 4.1 9E-05 35.8 5.4 213 116-377 170-409 (412)
199 PF05686 Glyco_transf_90: Glyc 79.0 11 0.00024 35.1 8.2 50 329-378 269-318 (395)
200 KOG1021 Acetylglucosaminyltran 76.4 11 0.00023 36.1 7.4 40 253-292 336-376 (464)
201 KOG3349 Predicted glycosyltran 75.5 15 0.00033 28.7 6.5 92 190-292 4-108 (170)
202 KOG0780 Signal recognition par 75.3 64 0.0014 29.9 11.3 159 195-376 159-341 (483)
203 PRK10916 ADP-heptose:LPS hepto 75.1 13 0.00028 34.0 7.5 100 188-296 179-292 (348)
204 PRK13398 3-deoxy-7-phosphohept 73.8 62 0.0013 28.4 11.1 96 193-292 29-142 (266)
205 PRK13940 glutamyl-tRNA reducta 70.5 97 0.0021 29.2 12.7 68 223-299 207-279 (414)
206 PRK13397 3-deoxy-7-phosphohept 70.2 54 0.0012 28.4 9.5 88 202-292 25-130 (250)
207 PRK13396 3-deoxy-7-phosphohept 69.6 72 0.0016 29.2 10.6 100 190-293 100-217 (352)
208 KOG1192 UDP-glucuronosyl and U 69.5 21 0.00045 34.5 7.8 26 7-32 15-40 (496)
209 PF11440 AGT: DNA alpha-glucos 68.0 34 0.00074 29.9 7.6 304 9-343 2-353 (355)
210 TIGR00075 hypD hydrogenase exp 64.2 65 0.0014 29.5 9.0 83 209-292 125-226 (369)
211 PF10686 DUF2493: Protein of u 62.5 45 0.00097 22.4 8.6 55 190-250 4-58 (71)
212 PRK05282 (alpha)-aspartyl dipe 62.3 45 0.00098 28.6 7.5 102 191-294 3-123 (233)
213 PF10649 DUF2478: Protein of u 62.2 13 0.00028 29.6 3.9 36 259-294 92-133 (159)
214 cd07944 DRE_TIM_HOA_like 4-hyd 61.2 1.1E+02 0.0025 26.7 11.9 35 263-297 186-221 (266)
215 COG0373 HemA Glutamyl-tRNA red 60.1 1.5E+02 0.0033 27.8 14.1 73 222-301 203-282 (414)
216 PRK13761 hypothetical protein; 59.8 1.1E+02 0.0023 25.9 9.4 94 259-379 149-243 (248)
217 cd03146 GAT1_Peptidase_E Type 59.1 46 0.001 28.0 7.1 88 204-293 16-123 (212)
218 TIGR01361 DAHP_synth_Bsub phos 59.1 66 0.0014 28.1 8.2 56 236-292 76-140 (260)
219 PRK10494 hypothetical protein; 57.7 76 0.0017 27.7 8.3 86 206-293 107-210 (259)
220 PRK12595 bifunctional 3-deoxy- 57.4 1.2E+02 0.0026 27.9 9.9 87 204-293 130-234 (360)
221 COG1701 Uncharacterized protei 57.0 1E+02 0.0022 25.7 8.1 93 259-378 152-245 (256)
222 PRK00994 F420-dependent methyl 55.9 1.3E+02 0.0028 25.7 14.1 104 193-309 7-116 (277)
223 PRK15062 hydrogenase isoenzyme 54.5 1.2E+02 0.0026 27.8 9.0 83 209-292 119-220 (364)
224 PF01408 GFO_IDH_MocA: Oxidore 54.0 37 0.0008 25.1 5.2 69 218-292 22-94 (120)
225 cd05565 PTS_IIB_lactose PTS_II 53.7 18 0.0004 26.2 3.2 67 224-292 4-80 (99)
226 PF09949 DUF2183: Uncharacteri 53.4 20 0.00042 26.1 3.3 36 210-248 53-88 (100)
227 PRK00676 hemA glutamyl-tRNA re 53.0 1.8E+02 0.004 26.5 14.5 95 256-380 222-321 (338)
228 PF00533 BRCT: BRCA1 C Terminu 52.6 66 0.0014 21.3 6.0 67 220-292 7-73 (78)
229 cd01020 TroA_b Metal binding p 51.8 89 0.0019 27.3 7.9 45 329-376 103-149 (264)
230 COG2984 ABC-type uncharacteriz 50.5 29 0.00063 31.0 4.5 87 204-293 144-248 (322)
231 cd01967 Nitrogenase_MoFe_alpha 49.8 2.2E+02 0.0048 26.6 10.9 85 201-290 134-237 (406)
232 cd00027 BRCT Breast Cancer Sup 49.8 64 0.0014 20.5 5.4 64 222-292 2-66 (72)
233 PF00852 Glyco_transf_10: Glyc 48.0 31 0.00067 31.6 4.6 58 276-350 246-305 (349)
234 PF11238 DUF3039: Protein of u 47.6 15 0.00033 23.3 1.7 15 276-290 16-30 (58)
235 PF01993 MTD: methylene-5,6,7, 47.5 39 0.00085 28.7 4.6 105 193-310 6-116 (276)
236 PRK13302 putative L-aspartate 47.4 68 0.0015 28.2 6.5 69 219-293 29-100 (271)
237 COG5017 Uncharacterized conser 46.2 36 0.00078 26.2 3.8 46 252-301 57-103 (161)
238 COG1830 FbaB DhnA-type fructos 46.1 89 0.0019 27.2 6.6 128 190-344 114-260 (265)
239 PRK08673 3-deoxy-7-phosphohept 45.9 2.2E+02 0.0048 26.0 9.5 89 201-292 102-208 (335)
240 cd05566 PTS_IIB_galactitol PTS 45.7 79 0.0017 22.0 5.6 46 224-269 4-57 (89)
241 PF04392 ABC_sub_bind: ABC tra 45.4 20 0.00043 31.9 2.9 143 123-292 58-219 (294)
242 TIGR02069 cyanophycinase cyano 43.8 1.1E+02 0.0024 26.5 7.1 91 204-295 12-127 (250)
243 PF12738 PTCB-BRCT: twin BRCT 42.6 37 0.0008 21.8 3.2 51 237-291 12-62 (63)
244 PRK05472 redox-sensing transcr 41.8 1.4E+02 0.003 25.1 7.3 28 203-230 66-93 (213)
245 PF00862 Sucrose_synth: Sucros 41.0 7.5 0.00016 36.9 -0.5 18 7-24 295-312 (550)
246 PF03037 KMP11: Kinetoplastid 41.0 79 0.0017 21.0 4.3 45 329-375 4-48 (90)
247 PRK10834 vancomycin high tempe 40.7 2.4E+02 0.0052 24.3 8.8 85 206-292 68-169 (239)
248 cd03129 GAT1_Peptidase_E_like 40.5 1.8E+02 0.0038 24.3 7.8 74 220-293 28-123 (210)
249 cd01080 NAD_bind_m-THF_DH_Cycl 39.6 82 0.0018 25.4 5.3 59 207-270 30-97 (168)
250 COG3473 Maleate cis-trans isom 39.3 1.6E+02 0.0034 24.7 6.7 35 259-293 178-213 (238)
251 PRK08444 hypothetical protein; 39.2 1.9E+02 0.0042 26.5 8.3 104 193-299 100-217 (353)
252 PRK05447 1-deoxy-D-xylulose 5- 38.8 1.8E+02 0.0039 27.1 7.9 81 202-292 36-123 (385)
253 PRK13304 L-aspartate dehydroge 38.4 1.3E+02 0.0028 26.4 6.8 68 221-294 26-95 (265)
254 COG2247 LytB Putative cell wal 38.2 1.1E+02 0.0025 27.3 6.2 18 276-293 146-164 (337)
255 PTZ00254 40S ribosomal protein 37.3 1.9E+02 0.0041 25.1 7.3 85 202-291 52-148 (249)
256 PF02826 2-Hacid_dh_C: D-isome 37.3 90 0.002 25.3 5.4 42 252-293 83-129 (178)
257 PF03447 NAD_binding_3: Homose 37.1 35 0.00076 25.3 2.7 71 221-294 21-93 (117)
258 COG0281 SfcA Malic enzyme [Ene 36.8 2.6E+02 0.0057 26.3 8.5 43 257-300 266-308 (432)
259 PRK10017 colanic acid biosynth 36.1 2.8E+02 0.0061 26.3 9.0 32 201-232 12-44 (426)
260 COG0409 HypD Hydrogenase matur 35.9 1.7E+02 0.0036 26.4 6.8 84 209-293 121-222 (364)
261 PF11997 DUF3492: Domain of un 35.0 10 0.00022 33.3 -0.6 25 122-146 243-267 (268)
262 TIGR01012 Sa_S2_E_A ribosomal 34.0 2.8E+02 0.006 23.1 7.7 84 203-292 44-139 (196)
263 PF08288 PIGA: PIGA (GPI ancho 34.0 27 0.0006 24.5 1.5 24 56-79 38-61 (90)
264 cd05564 PTS_IIB_chitobiose_lic 33.6 43 0.00093 24.0 2.6 68 224-293 3-80 (96)
265 PRK15438 erythronate-4-phospha 33.1 2.1E+02 0.0045 26.7 7.4 69 221-294 116-210 (378)
266 PRK00048 dihydrodipicolinate r 33.0 1.1E+02 0.0024 26.6 5.5 42 252-293 52-93 (257)
267 PRK06718 precorrin-2 dehydroge 32.6 2.9E+02 0.0063 22.9 14.4 98 187-300 9-110 (202)
268 PF02006 DUF137: Protein of un 32.2 2.7E+02 0.0059 22.4 7.9 87 259-372 88-175 (178)
269 PF01113 DapB_N: Dihydrodipico 31.9 19 0.00041 27.3 0.5 44 252-295 59-102 (124)
270 COG0062 Uncharacterized conser 31.5 3.1E+02 0.0067 22.9 10.1 97 190-293 50-160 (203)
271 TIGR00639 PurN phosphoribosylg 30.6 61 0.0013 26.7 3.3 69 8-76 8-87 (190)
272 cd05312 NAD_bind_1_malic_enz N 30.1 3.3E+02 0.0071 24.1 7.8 56 237-292 78-140 (279)
273 PF14386 DUF4417: Domain of un 30.1 1.1E+02 0.0024 25.5 4.7 40 191-230 138-177 (200)
274 TIGR03569 NeuB_NnaB N-acetylne 29.7 2.1E+02 0.0045 26.1 6.7 57 236-293 76-142 (329)
275 TIGR00853 pts-lac PTS system, 29.5 65 0.0014 23.1 2.9 68 224-293 7-84 (95)
276 cd04240 AAK_UC AAK_UC: Unchara 29.4 3.3E+02 0.0072 22.6 7.6 76 205-292 12-99 (203)
277 COG1628 Endonuclease V homolog 29.2 1.5E+02 0.0033 24.2 5.1 79 236-355 53-134 (185)
278 PF13169 Poxvirus_B22R_N: Poxv 28.9 2.2E+02 0.0047 20.3 5.4 25 356-380 44-68 (92)
279 COG1922 WecG Teichoic acid bio 28.6 2E+02 0.0043 25.0 6.1 144 115-301 55-202 (253)
280 TIGR02536 eut_hyp ethanolamine 28.6 3.6E+02 0.0077 22.7 8.4 52 241-293 35-99 (207)
281 KOG0832 Mitochondrial/chloropl 28.5 2.9E+02 0.0064 23.5 6.8 37 262-299 175-212 (251)
282 PRK05562 precorrin-2 dehydroge 28.5 3.7E+02 0.008 22.9 11.7 74 221-300 48-126 (223)
283 KOG2619 Fucosyltransferase [Ca 28.3 1.2E+02 0.0026 28.0 5.0 57 276-350 269-326 (372)
284 PRK12862 malic enzyme; Reviewe 27.9 4.3E+02 0.0093 27.3 9.3 48 252-300 253-300 (763)
285 PRK06027 purU formyltetrahydro 27.5 61 0.0013 28.7 3.0 66 11-76 100-173 (286)
286 PRK02079 pyrroloquinoline quin 27.5 1.7E+02 0.0036 20.7 4.6 50 329-382 33-83 (88)
287 cd03174 DRE_TIM_metallolyase D 27.3 4E+02 0.0087 22.9 11.2 111 204-340 113-245 (265)
288 TIGR01470 cysG_Nterm siroheme 27.0 3.7E+02 0.0081 22.4 12.2 97 188-300 9-110 (205)
289 PRK13660 hypothetical protein; 26.8 3.6E+02 0.0077 22.1 7.0 37 190-230 43-80 (182)
290 COG3340 PepE Peptidase E [Amin 26.8 3.9E+02 0.0085 22.6 7.5 89 206-294 18-128 (224)
291 TIGR01768 GGGP-family geranylg 26.4 1.8E+02 0.004 24.7 5.4 69 199-269 6-80 (223)
292 PF04430 DUF498: Protein of un 26.2 99 0.0021 22.8 3.5 42 209-251 41-82 (110)
293 cd00316 Oxidoreductase_nitroge 26.0 5.2E+02 0.011 23.9 9.2 99 190-291 113-231 (399)
294 PRK00771 signal recognition pa 25.8 5.9E+02 0.013 24.3 12.4 97 262-375 235-333 (437)
295 PF13263 PHP_C: PHP-associated 25.7 40 0.00086 21.3 1.1 24 277-300 8-31 (56)
296 TIGR01769 GGGP geranylgeranylg 25.7 2.4E+02 0.0051 23.7 6.0 68 199-269 5-78 (205)
297 TIGR03586 PseI pseudaminic aci 25.4 2.7E+02 0.0059 25.3 6.7 57 236-293 77-143 (327)
298 COG0111 SerA Phosphoglycerate 24.9 2.2E+02 0.0048 25.8 6.1 25 252-276 189-215 (324)
299 COG1519 KdtA 3-deoxy-D-manno-o 24.9 53 0.0011 30.6 2.1 96 189-292 49-154 (419)
300 COG3737 Uncharacterized conser 24.8 1.8E+02 0.0038 21.9 4.4 53 200-253 48-100 (127)
301 PF01924 HypD: Hydrogenase for 24.6 72 0.0016 29.0 2.9 33 260-292 180-215 (355)
302 PF08766 DEK_C: DEK C terminal 23.7 96 0.0021 19.4 2.6 35 330-364 2-36 (54)
303 COG2998 TupB ABC-type tungstat 23.6 4.7E+02 0.01 22.4 8.6 98 123-261 78-176 (280)
304 COG3563 KpsC Capsule polysacch 23.3 1.6E+02 0.0034 28.2 4.8 34 255-294 220-254 (671)
305 PRK08508 biotin synthase; Prov 23.1 5.2E+02 0.011 22.7 8.6 102 190-299 59-165 (279)
306 PRK04885 ppnK inorganic polyph 23.0 4.4E+02 0.0094 23.1 7.4 71 239-344 18-94 (265)
307 COG2327 WcaK Polysaccharide py 22.5 6.4E+02 0.014 23.6 8.5 101 191-293 4-133 (385)
308 smart00292 BRCT breast cancer 22.3 2.3E+02 0.0049 18.2 5.3 68 220-292 4-72 (80)
309 PRK12861 malic enzyme; Reviewe 22.3 3.9E+02 0.0084 27.6 7.7 45 252-297 249-293 (764)
310 PRK08887 nicotinic acid mononu 22.3 3E+02 0.0065 22.2 5.9 67 208-286 85-151 (174)
311 PRK05632 phosphate acetyltrans 22.0 4.9E+02 0.011 26.5 8.5 93 188-291 556-652 (684)
312 PRK03501 ppnK inorganic polyph 21.8 3.7E+02 0.0081 23.5 6.7 56 259-344 38-98 (264)
313 TIGR03855 NAD_NadX aspartate d 21.8 2.9E+02 0.0062 23.6 5.9 58 238-295 12-72 (229)
314 PRK05647 purN phosphoribosylgl 21.7 1.4E+02 0.0031 24.8 4.0 68 9-76 10-88 (200)
315 cd01972 Nitrogenase_VnfE_like 21.5 6.9E+02 0.015 23.6 9.9 88 202-291 137-244 (426)
316 cd07940 DRE_TIM_IPMS 2-isoprop 21.5 5.5E+02 0.012 22.4 8.4 28 270-297 197-227 (268)
317 PF11071 DUF2872: Protein of u 21.4 94 0.002 23.7 2.5 43 255-297 67-113 (141)
318 PF02585 PIG-L: GlcNAc-PI de-N 21.4 1.5E+02 0.0033 22.2 3.9 28 52-79 84-111 (128)
319 PF06345 Drf_DAD: DRF Autoregu 21.4 86 0.0019 13.6 1.3 10 276-285 5-14 (15)
320 PLN03033 2-dehydro-3-deoxyphos 21.1 5.2E+02 0.011 22.9 7.2 99 192-292 17-138 (290)
321 PRK04207 glyceraldehyde-3-phos 21.0 5.3E+02 0.011 23.6 7.8 39 254-292 72-110 (341)
322 smart00633 Glyco_10 Glycosyl h 20.9 2.3E+02 0.0051 24.4 5.4 89 202-293 99-191 (254)
323 PRK07232 bifunctional malic en 20.8 5.2E+02 0.011 26.7 8.2 46 253-299 246-291 (752)
324 TIGR00715 precor6x_red precorr 20.7 1.1E+02 0.0024 26.7 3.2 44 241-295 189-234 (256)
325 TIGR00655 PurU formyltetrahydr 20.6 90 0.002 27.6 2.7 69 8-76 92-168 (280)
326 PF01012 ETF: Electron transfe 20.3 1.3E+02 0.0029 23.8 3.5 84 205-292 17-122 (164)
327 TIGR01761 thiaz-red thiazoliny 20.2 5.3E+02 0.012 23.6 7.6 89 191-293 4-99 (343)
328 PF02606 LpxK: Tetraacyldisacc 20.1 3.4E+02 0.0074 24.6 6.3 21 7-27 47-67 (326)
329 PRK00865 glutamate racemase; P 20.1 1.7E+02 0.0036 25.6 4.3 81 211-298 20-104 (261)
No 1
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=2e-40 Score=307.01 Aligned_cols=340 Identities=19% Similarity=0.190 Sum_probs=245.5
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcccCCCceeeeecCCCcccch-----hhcCCC---hhhhhHHHHHHhhhcCCCccEEE
Q 043412 2 APFLSGGGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQSLQ-----FWEGLP---HHMRNLAVELYNTECRTNETVVI 73 (383)
Q Consensus 2 ~p~~~~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~~~~~~~~l~~~~~~~~pDiV~ 73 (383)
-+.+..||.++++.++++.|.+.|+...+ +.+...+...... .+..++ .........+.+++++.+||+||
T Consensus 8 i~~~~~GG~e~~~~~l~~~l~~~~~~~~v-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~Divh 86 (374)
T TIGR03088 8 VYRFDVGGLENGLVNLINHLPADRYRHAV-VALTEVSAFRKRIQRPDVAFYALHKQPGKDVAVYPQLYRLLRQLRPDIVH 86 (374)
T ss_pred eCCCCCCcHHHHHHHHHhhccccccceEE-EEcCCCChhHHHHHhcCceEEEeCCCCCCChHHHHHHHHHHHHhCCCEEE
Confidence 35678899999999999999988775433 2222222211110 011111 22234567788889999999999
Q ss_pred ecCCCCCCCCcccccCCCCCCCCCCCcccccceeeeec--CCCCHHHHH-h-cCCCCEEEEeChHHHHHHHh-cCCCCCC
Q 043412 74 CHSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFET--DRVSPEHVK-R-CNRMDFVWVPTDFHVSTFIR-SGVDPAK 148 (383)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~-~~~ad~vi~~s~~~~~~~~~-~~~~~~~ 148 (383)
+|+....+ ............ . ....+++..+.. ..+...+.+ . .+.+|.++++|+..++.+.+ ++.++++
T Consensus 87 ~~~~~~~~-~~~~~~~~~~~~-~---i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vs~~~~~~~~~~~~~~~~~ 161 (374)
T TIGR03088 87 TRNLAALE-AQLPAALAGVPA-R---IHGEHGRDVFDLDGSNWKYRWLRRLYRPLIHHYVAVSRDLEDWLRGPVKVPPAK 161 (374)
T ss_pred EcchhHHH-HHHHHHhcCCCe-E---EEeecCcccccchhhHHHHHHHHHHHHhcCCeEEEeCHHHHHHHHHhcCCChhh
Confidence 99643321 111111111111 0 011111111111 111111222 1 35689999999999999887 6778889
Q ss_pred eEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCC----CeEE
Q 043412 149 VVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKAD----GVVL 224 (383)
Q Consensus 149 i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~----~~~l 224 (383)
+.+|+||+|.+.+.+........ ... .. ..++.++++++||+.+.||++.+++|+.++.++.+ +++|
T Consensus 162 ~~vi~ngvd~~~~~~~~~~~~~~--~~~-~~------~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l 232 (374)
T TIGR03088 162 IHQIYNGVDTERFHPSRGDRSPI--LPP-DF------FADESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRL 232 (374)
T ss_pred EEEeccCccccccCCCccchhhh--hHh-hc------CCCCCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEE
Confidence 99999999998776543211000 000 01 14568899999999999999999999999887755 7899
Q ss_pred EEEeCCCCCCCchHHHHHHHHhhCCCC---------CccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCc
Q 043412 225 YLLTNPYHSGRDFGNKIVNFVEDSDLE---------KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGP 295 (383)
Q Consensus 225 ~i~G~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~ 295 (383)
+++|+| +..+.+++.++.+++. +++..+++.||++++||..||+|++++|||+||+|||+|+.+|.
T Consensus 233 ~i~G~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g~ 307 (374)
T TIGR03088 233 VIVGDG-----PARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVIATAVGGN 307 (374)
T ss_pred EEecCC-----chHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEEEcCCCCc
Confidence 999987 4456777777766553 56778899999999999999999999999999999999999999
Q ss_pred cccccCC-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043412 296 TEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVTDH 374 (383)
Q Consensus 296 ~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~ 374 (383)
.|++.++ +|++++++ |++++++++.++++|++.+..|++++++.+.++|||+.+++++.++
T Consensus 308 ~e~i~~~~~g~~~~~~------------------d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~ 369 (374)
T TIGR03088 308 PELVQHGVTGALVPPG------------------DAVALARALQPYVSDPAARRAHGAAGRARAEQQFSINAMVAAYAGL 369 (374)
T ss_pred HHHhcCCCceEEeCCC------------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999885 78888776 9999999999999999999999999999988999999999999999
Q ss_pred HHHHH
Q 043412 375 IKDIL 379 (383)
Q Consensus 375 ~~~~~ 379 (383)
|++++
T Consensus 370 y~~~~ 374 (374)
T TIGR03088 370 YDQLL 374 (374)
T ss_pred HHHhC
Confidence 99864
No 2
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=6.8e-39 Score=298.67 Aligned_cols=326 Identities=18% Similarity=0.135 Sum_probs=236.6
Q ss_pred CCChhHHHHHHHHHHHhcccCCCceeeeecCCCccc-c---h--hhcCCC----------hhhhhHHHHHHhhhcCCCcc
Q 043412 7 GGGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQS-L---Q--FWEGLP----------HHMRNLAVELYNTECRTNET 70 (383)
Q Consensus 7 ~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~-~---~--~~~~~~----------~~~~~~~~~l~~~~~~~~pD 70 (383)
.||.++++.+++++|.++|+...+ .+...++... . . .+..+| .........+.+.+++.+||
T Consensus 13 ~GG~e~~~~~la~~L~~~G~~V~v--~~~~~~~~~~~~~~~~~i~v~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~D 90 (398)
T cd03796 13 LGGVETHIYQLSQCLIKRGHKVVV--ITHAYGNRVGIRYLTNGLKVYYLPFVVFYNQSTLPTFFGTFPLLRNILIRERIT 90 (398)
T ss_pred cccHHHHHHHHHHHHHHcCCeeEE--EeccCCcCCCcccccCceeEEEecceeccCCccccchhhhHHHHHHHHHhcCCC
Confidence 599999999999999999986543 2222111100 0 0 000011 01123445677778889999
Q ss_pred EEEecCCCCCCCC--cccccCCCCCCCCCCCcccccceeee-ecC--CCCHHHHHhcCCCCEEEEeChHHHHHHH-hcCC
Q 043412 71 VVICHSEPGAWYP--PLFDTLPCPPTPGYGDFMAVIGRTMF-ETD--RVSPEHVKRCNRMDFVWVPTDFHVSTFI-RSGV 144 (383)
Q Consensus 71 iV~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~ad~vi~~s~~~~~~~~-~~~~ 144 (383)
+||+|+....+.. .++.... +.+.+...++.... ... .........++++|.++++|+...+.+. ..++
T Consensus 91 iIh~~~~~~~~~~~~~~~~~~~-----~~~~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~ 165 (398)
T cd03796 91 IVHGHQAFSALAHEALLHARTM-----GLKTVFTDHSLFGFADASSIHTNKLLRFSLADVDHVICVSHTSKENTVLRASL 165 (398)
T ss_pred EEEECCCCchHHHHHHHHhhhc-----CCcEEEEecccccccchhhHHhhHHHHHhhccCCEEEEecHhHhhHHHHHhCC
Confidence 9999976443211 1111111 11112222221100 000 0111222236899999999999988654 4677
Q ss_pred CCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEE
Q 043412 145 DPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVL 224 (383)
Q Consensus 145 ~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l 224 (383)
+++++.+||||+|.+.|.+..... .++.++++++|++.++||++.+++|++.+.++.++++|
T Consensus 166 ~~~k~~vi~ngvd~~~f~~~~~~~------------------~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l 227 (398)
T cd03796 166 DPERVSVIPNAVDSSDFTPDPSKR------------------DNDKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRF 227 (398)
T ss_pred ChhhEEEEcCccCHHHcCCCcccC------------------CCCceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEE
Confidence 778999999999988776543210 35678999999999999999999999999888899999
Q ss_pred EEEeCCCCCCCchHHHHHHHHhhCCCC-----------CccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCC
Q 043412 225 YLLTNPYHSGRDFGNKIVNFVEDSDLE-----------KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWS 293 (383)
Q Consensus 225 ~i~G~~~~~~~~~~~~~~~~~~~~~~~-----------~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~ 293 (383)
+++|+| +..+.++++++.+++. +++..+++.||++++||..|++|++++|||+||+|||+|+.+
T Consensus 228 ~i~G~g-----~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~g 302 (398)
T cd03796 228 IIGGDG-----PKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVG 302 (398)
T ss_pred EEEeCC-----chHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCC
Confidence 999987 4467778888877664 345678899999999999999999999999999999999999
Q ss_pred CccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043412 294 GPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVTD 373 (383)
Q Consensus 294 g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~ 373 (383)
|..|++.++.+++++. |+++++++|.++++++.....+..++++.+.++|||+.+++++.+
T Consensus 303 g~~e~i~~~~~~~~~~-------------------~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~ 363 (398)
T cd03796 303 GIPEVLPPDMILLAEP-------------------DVESIVRKLEEAISILRTGKHDPWSFHNRVKKMYSWEDVAKRTEK 363 (398)
T ss_pred CchhheeCCceeecCC-------------------CHHHHHHHHHHHHhChhhhhhHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 9999998765443332 899999999999998776667888889989999999999999999
Q ss_pred HHHHHHhc
Q 043412 374 HIKDILSS 381 (383)
Q Consensus 374 ~~~~~~~~ 381 (383)
+|++++..
T Consensus 364 ~y~~l~~~ 371 (398)
T cd03796 364 VYDRILQT 371 (398)
T ss_pred HHHHHhcC
Confidence 99998754
No 3
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=1.5e-39 Score=301.99 Aligned_cols=268 Identities=21% Similarity=0.280 Sum_probs=217.2
Q ss_pred hhcCCCccEEEecCCCCCCCCcccccC---CCCCCCCCCCcccccceeeeecC---CCCHHHHHhcCCCCEEEEeChHHH
Q 043412 63 TECRTNETVVICHSEPGAWYPPLFDTL---PCPPTPGYGDFMAVIGRTMFETD---RVSPEHVKRCNRMDFVWVPTDFHV 136 (383)
Q Consensus 63 ~~~~~~pDiV~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ad~vi~~s~~~~ 136 (383)
.+++.+||+||+|.....+....+... ..+. ..+.++...+... .....+...++++|.++++|+..+
T Consensus 113 ~~~~~~~diihaH~~~~~~~~~~~~~~~~~~~~~------~~t~Hg~d~~~~~~~~~~~~~~~~~~~~ad~vv~~S~~~~ 186 (406)
T PRK15427 113 VATPFVADVFIAHFGPAGVTAAKLRELGVLRGKI------ATIFHGIDISSREVLNHYTPEYQQLFRRGDLMLPISDLWA 186 (406)
T ss_pred hhccCCCCEEEEcCChHHHHHHHHHHhCCCCCCe------EEEEcccccccchhhhhhhHHHHHHHHhCCEEEECCHHHH
Confidence 446779999999976543332222221 1111 2233343332111 122344555789999999999999
Q ss_pred HHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHh
Q 043412 137 STFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEF 216 (383)
Q Consensus 137 ~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~ 216 (383)
+.+.+++.+++++.++|||+|.+.|.+..... .++.+.++++||+.+.||++.+++|++.+.
T Consensus 187 ~~l~~~g~~~~ki~vi~nGvd~~~f~~~~~~~------------------~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~ 248 (406)
T PRK15427 187 GRLQKMGCPPEKIAVSRMGVDMTRFSPRPVKA------------------PATPLEIISVARLTEKKGLHVAIEACRQLK 248 (406)
T ss_pred HHHHHcCCCHHHEEEcCCCCCHHHcCCCcccc------------------CCCCeEEEEEeCcchhcCHHHHHHHHHHHH
Confidence 99998888888999999999998886533211 234678999999999999999999999998
Q ss_pred ccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC-----------CccccccccCceEEecCCC------CCCChHHHH
Q 043412 217 SKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE-----------KPDDGWAPAADVFVLPSRG------EGWGRPLVE 279 (383)
Q Consensus 217 ~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~-----------~~v~~~~~~adi~v~ps~~------e~~~~~~~E 279 (383)
++.++++++++|+| +..+++++.++++++. +++..+|+.||++++||.. ||+|++++|
T Consensus 249 ~~~~~~~l~ivG~G-----~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llE 323 (406)
T PRK15427 249 EQGVAFRYRILGIG-----PWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALME 323 (406)
T ss_pred hhCCCEEEEEEECc-----hhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHH
Confidence 88899999999998 5678888998888775 3456888999999999974 999999999
Q ss_pred HHHcCCCEEEcCCCCccccccCC-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Q 043412 280 AMSMGLPVIATNWSGPTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVS-NVDEAKAKGKQARED 357 (383)
Q Consensus 280 a~a~G~PvI~~~~~g~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~ 357 (383)
||+||+|||+|+.+|.+|++.++ +|++++++ |+++++++|.++++ |++.+.+|+++++++
T Consensus 324 Ama~G~PVI~t~~~g~~E~v~~~~~G~lv~~~------------------d~~~la~ai~~l~~~d~~~~~~~~~~ar~~ 385 (406)
T PRK15427 324 AMAVGIPVVSTLHSGIPELVEADKSGWLVPEN------------------DAQALAQRLAAFSQLDTDELAPVVKRAREK 385 (406)
T ss_pred HHhCCCCEEEeCCCCchhhhcCCCceEEeCCC------------------CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999999999999999886 88888776 99999999999999 999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHH
Q 043412 358 MIQRFSPETVAGIVTDHIKD 377 (383)
Q Consensus 358 ~~~~~s~~~~~~~~~~~~~~ 377 (383)
+.++|+|+.+++++.++|++
T Consensus 386 v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 386 VETDFNQQVINRELASLLQA 405 (406)
T ss_pred HHHhcCHHHHHHHHHHHHhh
Confidence 99999999999999999976
No 4
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=2.2e-38 Score=296.50 Aligned_cols=345 Identities=16% Similarity=0.123 Sum_probs=238.4
Q ss_pred CCCChhHHHHHHHHHHHhcccCCCceeeeecCCCcccchhhcC-----C--------Chhh-----hhHHHHHH-hhhc-
Q 043412 6 SGGGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQSLQFWEG-----L--------PHHM-----RNLAVELY-NTEC- 65 (383)
Q Consensus 6 ~~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-----~--------~~~~-----~~~~~~l~-~~~~- 65 (383)
..||.+.++.+++++|.++|+.+.+.................+ . .... ......+. ..++
T Consensus 18 ~~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (405)
T TIGR03449 18 DAGGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAPGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLRAEARH 97 (405)
T ss_pred CCCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccCCCcEEEEecCCCcccCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 3699999999999999999986654221111111000000001 0 0000 00111122 3333
Q ss_pred -CCCccEEEecCCCCCCCCccccc-CCCCCCCCCCCcccccceeeeecC---CCCHHH--HHhcCCCCEEEEeChHHHHH
Q 043412 66 -RTNETVVICHSEPGAWYPPLFDT-LPCPPTPGYGDFMAVIGRTMFETD---RVSPEH--VKRCNRMDFVWVPTDFHVST 138 (383)
Q Consensus 66 -~~~pDiV~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~ad~vi~~s~~~~~~ 138 (383)
..+||+||+|.....+....+.. ...+.+.+.+..........+... .....+ ...++++|.++++|+...+.
T Consensus 98 ~~~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~vi~~s~~~~~~ 177 (405)
T TIGR03449 98 EPGYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAHTLAAVKNAALADGDTPEPEARRIGEQQLVDNADRLIANTDEEARD 177 (405)
T ss_pred cCCCCCeEEechHHHHHHHHHHHHhcCCCEEEeccchHHHHHHhccCCCCCchHHHHHHHHHHHHhcCeEEECCHHHHHH
Confidence 24899999996433222212111 122222222222111110110000 011111 22468999999999998888
Q ss_pred HHh-cCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhc
Q 043412 139 FIR-SGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFS 217 (383)
Q Consensus 139 ~~~-~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~ 217 (383)
+.+ ++.+++++.+||||+|.+.+.+..... .+.+++ +++++++|+++|++.+.||++.+++|+..+.+
T Consensus 178 ~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~----~~~~~~-------~~~~~~~i~~~G~l~~~K~~~~li~a~~~l~~ 246 (405)
T TIGR03449 178 LVRHYDADPDRIDVVAPGADLERFRPGDRAT----ERARLG-------LPLDTKVVAFVGRIQPLKAPDVLLRAVAELLD 246 (405)
T ss_pred HHHHcCCChhhEEEECCCcCHHHcCCCcHHH----HHHhcC-------CCCCCcEEEEecCCCcccCHHHHHHHHHHHHh
Confidence 776 787778999999999998776542111 111222 34678899999999999999999999999988
Q ss_pred cCCC--eEEEEEeCCCCCCCchHHHHHHHHhhCCCCC-----------ccccccccCceEEecCCCCCCChHHHHHHHcC
Q 043412 218 KADG--VVLYLLTNPYHSGRDFGNKIVNFVEDSDLEK-----------PDDGWAPAADVFVLPSRGEGWGRPLVEAMSMG 284 (383)
Q Consensus 218 ~~~~--~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G 284 (383)
+.++ ++|+++|++..+..+..+.++++++.+++.+ ++..+++.||++++||..|+||++++|||++|
T Consensus 247 ~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G 326 (405)
T TIGR03449 247 RDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQACG 326 (405)
T ss_pred hCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcC
Confidence 8776 9999999753222145677888888877753 44578899999999999999999999999999
Q ss_pred CCEEEcCCCCccccccCC-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 043412 285 LPVIATNWSGPTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFS 363 (383)
Q Consensus 285 ~PvI~~~~~g~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s 363 (383)
+|||+++.++..|++.++ +|++++++ |+++++++|.++++|++.+++|++++++.+ ++||
T Consensus 327 ~Pvi~~~~~~~~e~i~~~~~g~~~~~~------------------d~~~la~~i~~~l~~~~~~~~~~~~~~~~~-~~fs 387 (405)
T TIGR03449 327 TPVVAARVGGLPVAVADGETGLLVDGH------------------DPADWADALARLLDDPRTRIRMGAAAVEHA-AGFS 387 (405)
T ss_pred CCEEEecCCCcHhhhccCCceEECCCC------------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HhCC
Confidence 999999999999999875 78877766 999999999999999999999999999864 7899
Q ss_pred HHHHHHHHHHHHHHHHh
Q 043412 364 PETVAGIVTDHIKDILS 380 (383)
Q Consensus 364 ~~~~~~~~~~~~~~~~~ 380 (383)
|+.+++++.++|.+++.
T Consensus 388 w~~~~~~~~~~y~~~~~ 404 (405)
T TIGR03449 388 WAATADGLLSSYRDALA 404 (405)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999998764
No 5
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=1.9e-38 Score=300.34 Aligned_cols=241 Identities=18% Similarity=0.185 Sum_probs=181.8
Q ss_pred hcCCCCEEEEeChHHHHHHHhc----------CCCCCCeEEecCCCcCCCCCCCCCCCCcccc---------CCcccccc
Q 043412 121 RCNRMDFVWVPTDFHVSTFIRS----------GVDPAKVVKIVQPVHVGFFDPVNCDPIDLAS---------IGKPVLGL 181 (383)
Q Consensus 121 ~~~~ad~vi~~s~~~~~~~~~~----------~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~---------~~~~~l~~ 181 (383)
.+..||.|+++|+..++.+... +.+++|+.+|+||+|.+.|.|.......... ..+..+ .
T Consensus 194 ~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l-~ 272 (466)
T PRK00654 194 GLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRAL-Q 272 (466)
T ss_pred HHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCCCccccCCccCcccccccChhhhhchHHHHHHH-H
Confidence 4688999999999999888652 2346799999999999998875432110000 000000 0
Q ss_pred CCCCCC-CCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC--------C
Q 043412 182 SNMNTS-SKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE--------K 252 (383)
Q Consensus 182 ~~~~~~-~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~--------~ 252 (383)
..++++ ++.++++++||+.++||++.+++|++++.++ +++|+++|+|+ ..+.+.+++++++++.. +
T Consensus 273 ~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~--~~~lvivG~g~---~~~~~~l~~l~~~~~~~v~~~~g~~~ 347 (466)
T PRK00654 273 ERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQ--GGQLVLLGTGD---PELEEAFRALAARYPGKVGVQIGYDE 347 (466)
T ss_pred HHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHhc--CCEEEEEecCc---HHHHHHHHHHHHHCCCcEEEEEeCCH
Confidence 112233 3678999999999999999999999998764 79999999873 24556777777765432 2
Q ss_pred c-cccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHH
Q 043412 253 P-DDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVD 331 (383)
Q Consensus 253 ~-v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~ 331 (383)
+ +..+|+.||++++||.+|+||++++|||+||+|+|+++.||..|++.+++.. .+..+|+++++.|++
T Consensus 348 ~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~-----------~~~~~G~lv~~~d~~ 416 (466)
T PRK00654 348 ALAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPE-----------DGEATGFVFDDFNAE 416 (466)
T ss_pred HHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCC-----------CCCCceEEeCCCCHH
Confidence 2 3578899999999999999999999999999999999999999988653100 111234444445999
Q ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 043412 332 KLRALMRLVVS---NVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIKDILSS 381 (383)
Q Consensus 332 ~la~~i~~ll~---~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~~~~ 381 (383)
+++++|.++++ +++.+.+|++++. .+.|||+.+++++.++|++++++
T Consensus 417 ~la~~i~~~l~~~~~~~~~~~~~~~~~---~~~fsw~~~a~~~~~lY~~~~~~ 466 (466)
T PRK00654 417 DLLRALRRALELYRQPPLWRALQRQAM---AQDFSWDKSAEEYLELYRRLLGK 466 (466)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHh---ccCCChHHHHHHHHHHHHHHhhC
Confidence 99999999876 7777888888875 47899999999999999998753
No 6
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=3.8e-38 Score=297.23 Aligned_cols=242 Identities=15% Similarity=0.182 Sum_probs=182.6
Q ss_pred HHhcCCCCEEEEeChHHHHHHHhc--C--------CCCCCeEEecCCCcCCCCCCCCCCCCc---------------ccc
Q 043412 119 VKRCNRMDFVWVPTDFHVSTFIRS--G--------VDPAKVVKIVQPVHVGFFDPVNCDPID---------------LAS 173 (383)
Q Consensus 119 ~~~~~~ad~vi~~s~~~~~~~~~~--~--------~~~~~i~vi~ngid~~~~~~~~~~~~~---------------~~~ 173 (383)
+..+..||.|+++|+..++.+... | .+.+++.+|+||+|.+.|.|....... ...
T Consensus 204 k~~i~~ad~vitVS~~~a~ei~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l 283 (485)
T PRK14099 204 KAGLQLADRITTVSPTYALEIQGPEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAAL 283 (485)
T ss_pred HHHHHhcCeeeecChhHHHHHhcccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHH
Confidence 344789999999999999988752 2 236799999999999988876432110 001
Q ss_pred CCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhC-----
Q 043412 174 IGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDS----- 248 (383)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~----- 248 (383)
+.++++. ..++.++++++||+.++||++.+++|+..+.++ +++|+++|+|+ .++.+.++++++.+
T Consensus 284 ~~~~gl~-----~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~~--~~~lvivG~G~---~~~~~~l~~l~~~~~~~v~ 353 (485)
T PRK14099 284 QARFGLD-----PDPDALLLGVISRLSWQKGLDLLLEALPTLLGE--GAQLALLGSGD---AELEARFRAAAQAYPGQIG 353 (485)
T ss_pred HHHcCCC-----cccCCcEEEEEecCCccccHHHHHHHHHHHHhc--CcEEEEEecCC---HHHHHHHHHHHHHCCCCEE
Confidence 1122221 124578999999999999999999999988653 78999999873 23556676666553
Q ss_pred ---CCCCcccccc-ccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCccc
Q 043412 249 ---DLEKPDDGWA-PAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHF 324 (383)
Q Consensus 249 ---~~~~~v~~~~-~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~ 324 (383)
|..+++..++ +.||++++||.+|+||++.+|||+||+|+|++++||..|++.+.+...- ..+..+|++
T Consensus 354 ~~~G~~~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~--------~~~~~~G~l 425 (485)
T PRK14099 354 VVIGYDEALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAI--------ATGVATGVQ 425 (485)
T ss_pred EEeCCCHHHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeeccccccc--------ccCCCceEE
Confidence 3345666665 6799999999999999999999999998888999999998865310000 000124555
Q ss_pred ccCCCHHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 043412 325 WAEPSVDKLRALMRL---VVSNVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIKDILSS 381 (383)
Q Consensus 325 ~~~~~~~~la~~i~~---ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~~~~ 381 (383)
+++.|+++++++|.+ +++|++.+++|+++++ .++|||+++++++.++|++++.+
T Consensus 426 ~~~~d~~~La~ai~~a~~l~~d~~~~~~l~~~~~---~~~fSw~~~a~~y~~lY~~l~~~ 482 (485)
T PRK14099 426 FSPVTADALAAALRKTAALFADPVAWRRLQRNGM---TTDVSWRNPAQHYAALYRSLVAE 482 (485)
T ss_pred eCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhh---hhcCChHHHHHHHHHHHHHHHhh
Confidence 555599999999997 6789999999999986 47899999999999999998764
No 7
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=3.3e-37 Score=285.33 Aligned_cols=334 Identities=16% Similarity=0.143 Sum_probs=239.9
Q ss_pred CCChhHHHHHHHHHHHhcccCCCceeeeecCCC-c-ccc---hh----hcCC-----ChhhhhHHHHHHhhhcCCCccEE
Q 043412 7 GGGYSSESWSYILALNEHVKNPRFKLAIEHHGD-L-QSL---QF----WEGL-----PHHMRNLAVELYNTECRTNETVV 72 (383)
Q Consensus 7 ~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~-~-~~~---~~----~~~~-----~~~~~~~~~~l~~~~~~~~pDiV 72 (383)
.||.++++.+++++|.++|+...+. +...+. . ... .. .... +.........+.+++++.+||+|
T Consensus 11 ~gG~~~~~~~la~~L~~~G~~v~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~div 88 (371)
T cd04962 11 YGGSGVVATELGKALARRGHEVHFI--TSSRPFRLDEYSPNIFFHEVEVPQYPLFQYPPYDLALASKIAEVAKRYKLDLL 88 (371)
T ss_pred CCCccchHHHHHHHHHhcCCceEEE--ecCCCcchhhhccCeEEEEecccccchhhcchhHHHHHHHHHHHHhcCCccEE
Confidence 5999999999999999999876542 221110 0 000 00 0011 11122345677788889999999
Q ss_pred EecCCCCCCCCcccccCCCCCCCCCCCcccccceeee---ecCCCCHHHHHhcCCCCEEEEeChHHHHHHHhcCCCCCCe
Q 043412 73 ICHSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMF---ETDRVSPEHVKRCNRMDFVWVPTDFHVSTFIRSGVDPAKV 149 (383)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~~~~~~~i 149 (383)
|+|...+......+........ ..+.+...++.... ............++++|.++++|+..++.+.+.+....++
T Consensus 89 h~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~i 167 (371)
T cd04962 89 HVHYAVPHAVAAYLAREILGKK-DLPVVTTLHGTDITLVGQDPSFQPATRFSIEKSDGVTAVSESLRQETYELFDITKEI 167 (371)
T ss_pred eecccCCccHHHHHHHHhcCcC-CCcEEEEEcCCccccccccccchHHHHHHHhhCCEEEEcCHHHHHHHHHhcCCcCCE
Confidence 9996543222212111111000 11112222221111 0111222333447899999999999999988754456789
Q ss_pred EEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeC
Q 043412 150 VKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTN 229 (383)
Q Consensus 150 ~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~ 229 (383)
.+||||+|...+.+...... ..+.+ ..++.++++++|++.+.||++.+++++.++.++ ++++++++|.
T Consensus 168 ~vi~n~~~~~~~~~~~~~~~----~~~~~-------~~~~~~~il~~g~l~~~K~~~~li~a~~~l~~~-~~~~l~i~G~ 235 (371)
T cd04962 168 EVIPNFVDEDRFRPKPDEAL----KRRLG-------APEGEKVLIHISNFRPVKRIDDVIRIFAKVRKE-VPARLLLVGD 235 (371)
T ss_pred EEecCCcCHhhcCCCchHHH----HHhcC-------CCCCCeEEEEecccccccCHHHHHHHHHHHHhc-CCceEEEEcC
Confidence 99999999876654332110 11122 346788999999999999999999999988765 5689999998
Q ss_pred CCCCCCchHHHHHHHHhhCCCC---------CccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCcccccc
Q 043412 230 PYHSGRDFGNKIVNFVEDSDLE---------KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLT 300 (383)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~ 300 (383)
| ...+.+++.+...++. +++..+++.||++++||..|++|++++|||++|+|||+|+.++..|++.
T Consensus 236 g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~~~~e~i~ 310 (371)
T cd04962 236 G-----PERSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASNAGGIPEVVK 310 (371)
T ss_pred C-----cCHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCCCchhhhc
Confidence 8 3345666666666543 5678899999999999999999999999999999999999999999998
Q ss_pred CC-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 043412 301 EE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIKDI 378 (383)
Q Consensus 301 ~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~ 378 (383)
++ +|++++++ |++++++++.++++|++.+.+|++++++.+.++|||+.+++++.++|+++
T Consensus 311 ~~~~G~~~~~~------------------~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 311 HGETGFLVDVG------------------DVEAMAEYALSLLEDDELWQEFSRAARNRAAERFDSERIVPQYEALYRRL 371 (371)
T ss_pred CCCceEEcCCC------------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 85 88888776 99999999999999999999999999998889999999999999999863
No 8
>PLN02316 synthase/transferase
Probab=100.00 E-value=2.4e-37 Score=304.11 Aligned_cols=364 Identities=15% Similarity=0.086 Sum_probs=239.7
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcccCCCceeeeecCCCc--------c----------------------cchhhc---
Q 043412 1 MAPFLSGGGYSSESWSYILALNEHVKNPRFKLAIEHHGDL--------Q----------------------SLQFWE--- 47 (383)
Q Consensus 1 ~~p~~~~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~--------~----------------------~~~~~~--- 47 (383)
|+||...||.+.++.+|.++|++.|+.+.+ .+...+.. . ..-++.
T Consensus 597 ~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~V--itP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~GV~vyfl~~~~ 674 (1036)
T PLN02316 597 MAPIAKVGGLGDVVTSLSRAVQDLNHNVDI--ILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWFGKVEGLSVYFLEPQN 674 (1036)
T ss_pred cCCCCCcCcHHHHHHHHHHHHHHcCCEEEE--EecCCcccchhhcccceEEEEeccCCEEEEEEEEEECCcEEEEEeccc
Confidence 689999999999999999999999984332 22211100 0 000000
Q ss_pred CC---------ChhhhhH---HHHHHhhhc--CCCccEEEecCCCCCCCCcccccCCC-CCCCCCCCcccccceeeeecC
Q 043412 48 GL---------PHHMRNL---AVELYNTEC--RTNETVVICHSEPGAWYPPLFDTLPC-PPTPGYGDFMAVIGRTMFETD 112 (383)
Q Consensus 48 ~~---------~~~~~~~---~~~l~~~~~--~~~pDiV~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 112 (383)
.+ +....++ -.....+++ ..+|||||||++..++.+.++..... ......+.+.+.|+.. +
T Consensus 675 ~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~talva~llk~~~~~~~~~~~p~V~TiHnl~-~--- 750 (1036)
T PLN02316 675 GMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVAWLFKDHYAHYGLSKARVVFTIHNLE-F--- 750 (1036)
T ss_pred cccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHHhhhhhccCCCCEEEEeCCcc-c---
Confidence 00 0000000 011222222 35899999998766554444332111 0000111223333211 0
Q ss_pred CCCHHHHHhcCCCCEEEEeChHHHHHHHhcC-CC--CCCeEEecCCCcCCCCCCCCCCCCccc----------cCCcccc
Q 043412 113 RVSPEHVKRCNRMDFVWVPTDFHVSTFIRSG-VD--PAKVVKIVQPVHVGFFDPVNCDPIDLA----------SIGKPVL 179 (383)
Q Consensus 113 ~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~~-~~--~~~i~vi~ngid~~~~~~~~~~~~~~~----------~~~~~~l 179 (383)
........+..+|.|+++|+.+++.+...+ +. ..++.+|+||||.+.|.|......... ...+..+
T Consensus 751 -~~n~lk~~l~~AD~ViTVS~tya~EI~~~~~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~L 829 (1036)
T PLN02316 751 -GANHIGKAMAYADKATTVSPTYSREVSGNSAIAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEAL 829 (1036)
T ss_pred -chhHHHHHHHHCCEEEeCCHHHHHHHHhccCcccccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHH
Confidence 111233456889999999999999887743 32 479999999999998877543211100 0000000
Q ss_pred ccCCCCCC-CCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC--Ccc--
Q 043412 180 GLSNMNTS-SKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE--KPD-- 254 (383)
Q Consensus 180 ~~~~~~~~-~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~--~~v-- 254 (383)
...++++ ++.++++++||+.++||++.+++|+.++.+ ++++|+|+|+|+. ..+...+++++..+++. +.+
T Consensus 830 -r~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~--~~~qlVIvG~Gpd--~~~e~~l~~La~~Lg~~~~~rV~f 904 (1036)
T PLN02316 830 -QQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE--RNGQVVLLGSAPD--PRIQNDFVNLANQLHSSHHDRARL 904 (1036)
T ss_pred -HHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhh--cCcEEEEEeCCCC--HHHHHHHHHHHHHhCccCCCeEEE
Confidence 0122234 367999999999999999999999999865 4799999999842 34567788888876542 222
Q ss_pred ---------ccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccc
Q 043412 255 ---------DGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFW 325 (383)
Q Consensus 255 ---------~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~ 325 (383)
..+|+.||++|+||++|+||++.+|||+||+|+|++++||++|+|.+.+...-. ......+.+|+++
T Consensus 905 ~g~~de~lah~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~----~~~~g~~~tGflf 980 (1036)
T PLN02316 905 CLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKER----AQAQGLEPNGFSF 980 (1036)
T ss_pred EecCCHHHHHHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhcccccccccc----ccccccCCceEEe
Confidence 258999999999999999999999999999999999999999999773110000 0000012456666
Q ss_pred cCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 043412 326 AEPSVDKLRALMRLVVSN-VDEAKAKGKQAREDMIQRFSPETVAGIVTDHIKDILS 380 (383)
Q Consensus 326 ~~~~~~~la~~i~~ll~~-~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~~~ 380 (383)
++.|+++++.+|.+++.+ ++....++..+++.+.+.|||+.++++|.++|+++.+
T Consensus 981 ~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~a~~ 1036 (1036)
T PLN02316 981 DGADAAGVDYALNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHSARK 1036 (1036)
T ss_pred CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhC
Confidence 667999999999999986 4556667888888888899999999999999998763
No 9
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=7.9e-38 Score=296.58 Aligned_cols=338 Identities=17% Similarity=0.206 Sum_probs=237.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcccCCCceeeeecCCCcccc---hh--hcC--CCh-----hhhhHHHHHHhhhcCCCc
Q 043412 2 APFLSGGGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQSL---QF--WEG--LPH-----HMRNLAVELYNTECRTNE 69 (383)
Q Consensus 2 ~p~~~~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~---~~--~~~--~~~-----~~~~~~~~l~~~~~~~~p 69 (383)
+||-..||.+.+..+++++|.+.|+...+ .+...+..... .. ... .+. ........+.+++++.+|
T Consensus 68 ~~~~~~gG~~~~~~~l~~~L~~~G~eV~v--lt~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~kp 145 (465)
T PLN02871 68 SPFSYVSGYKNRFQNFIRYLREMGDEVLV--VTTDEGVPQEFHGAKVIGSWSFPCPFYQKVPLSLALSPRIISEVARFKP 145 (465)
T ss_pred cCCcccccHHHHHHHHHHHHHHCCCeEEE--EecCCCCCccccCceeeccCCcCCccCCCceeeccCCHHHHHHHHhCCC
Confidence 46667899999999999999999986543 22222211100 00 000 110 011112357778888999
Q ss_pred cEEEecCCCCCCCCcc-ccc-CCCCCCCCCCCcccc-cceeeeecCCCC-H---HHHHhcCCCCEEEEeChHHHHHHHhc
Q 043412 70 TVVICHSEPGAWYPPL-FDT-LPCPPTPGYGDFMAV-IGRTMFETDRVS-P---EHVKRCNRMDFVWVPTDFHVSTFIRS 142 (383)
Q Consensus 70 DiV~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~---~~~~~~~~ad~vi~~s~~~~~~~~~~ 142 (383)
|+||+|+......... +.. ...+.+..++..... .....+ ..+. . .....++.+|.++++|+..++.+.+.
T Consensus 146 DiIh~~~~~~~~~~~~~~ak~~~ip~V~~~h~~~~~~~~~~~~--~~~~~~~~~~~r~~~~~ad~ii~~S~~~~~~l~~~ 223 (465)
T PLN02871 146 DLIHASSPGIMVFGALFYAKLLCVPLVMSYHTHVPVYIPRYTF--SWLVKPMWDIIRFLHRAADLTLVTSPALGKELEAA 223 (465)
T ss_pred CEEEECCCchhHHHHHHHHHHhCCCEEEEEecCchhhhhcccc--hhhHHHHHHHHHHHHhhCCEEEECCHHHHHHHHHc
Confidence 9999997533221111 111 122222111111100 000000 0000 0 11223578999999999999999886
Q ss_pred C-CCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCC
Q 043412 143 G-VDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADG 221 (383)
Q Consensus 143 ~-~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~ 221 (383)
+ .+.+++.++|||+|.+.|.+....... +.+... ..++.++|+++|++.+.||++.++++++++ ++
T Consensus 224 ~~~~~~kv~vi~nGvd~~~f~p~~~~~~~---~~~~~~------~~~~~~~i~~vGrl~~~K~~~~li~a~~~~----~~ 290 (465)
T PLN02871 224 GVTAANRIRVWNKGVDSESFHPRFRSEEM---RARLSG------GEPEKPLIVYVGRLGAEKNLDFLKRVMERL----PG 290 (465)
T ss_pred CCCCcCeEEEeCCccCccccCCccccHHH---HHHhcC------CCCCCeEEEEeCCCchhhhHHHHHHHHHhC----CC
Confidence 5 346799999999999888764321110 111111 134678899999999999999999998764 68
Q ss_pred eEEEEEeCCCCCCCchHHHHHHHHhhCC-----CC--CccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCC
Q 043412 222 VVLYLLTNPYHSGRDFGNKIVNFVEDSD-----LE--KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSG 294 (383)
Q Consensus 222 ~~l~i~G~~~~~~~~~~~~~~~~~~~~~-----~~--~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g 294 (383)
++|+|+|+| ++.+.++++++..+ .. +++..+|+.||++|+||..|++|++++|||+||+|||+++.+|
T Consensus 291 ~~l~ivG~G-----~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg 365 (465)
T PLN02871 291 ARLAFVGDG-----PYREELEKMFAGTPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPVVAARAGG 365 (465)
T ss_pred cEEEEEeCC-----hHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCEEEcCCCC
Confidence 999999987 55677777766543 32 5788999999999999999999999999999999999999999
Q ss_pred ccccccC---C-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 043412 295 PTEYLTE---E-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGI 370 (383)
Q Consensus 295 ~~e~v~~---~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~ 370 (383)
..|++++ + +|++++++ |+++++++|.++++|++.+++|++++++.+ ++|||+.++++
T Consensus 366 ~~eiv~~~~~~~~G~lv~~~------------------d~~~la~~i~~ll~~~~~~~~~~~~a~~~~-~~fsw~~~a~~ 426 (465)
T PLN02871 366 IPDIIPPDQEGKTGFLYTPG------------------DVDDCVEKLETLLADPELRERMGAAAREEV-EKWDWRAATRK 426 (465)
T ss_pred cHhhhhcCCCCCceEEeCCC------------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HhCCHHHHHHH
Confidence 9999987 4 77777766 999999999999999999999999999975 68999999999
Q ss_pred HHH-HHHHHHh
Q 043412 371 VTD-HIKDILS 380 (383)
Q Consensus 371 ~~~-~~~~~~~ 380 (383)
+.+ .|++++.
T Consensus 427 l~~~~Y~~~~~ 437 (465)
T PLN02871 427 LRNEQYSAAIW 437 (465)
T ss_pred HHHHHHHHHHH
Confidence 998 7988764
No 10
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=8.8e-38 Score=293.94 Aligned_cols=231 Identities=17% Similarity=0.211 Sum_probs=175.8
Q ss_pred hcCCCCEEEEeChHHHH-HHHhc-CCCCCCeEEecCCCcCCCCCCCCCCCCcccc---CCccccccCCCCCCCCcEEEEE
Q 043412 121 RCNRMDFVWVPTDFHVS-TFIRS-GVDPAKVVKIVQPVHVGFFDPVNCDPIDLAS---IGKPVLGLSNMNTSSKEFVFLS 195 (383)
Q Consensus 121 ~~~~ad~vi~~s~~~~~-~~~~~-~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~i~~ 195 (383)
.++.+|.|+++|+.... .+..+ +++++++.+||||+|.+.|.+.......... ..+.. ..++.+++++
T Consensus 181 ~~~~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~ 253 (439)
T TIGR02472 181 TLAHASLVITSTHQEIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSEIDNLLAPFL-------KDPEKPPILA 253 (439)
T ss_pred HHHhCCEEEECCHHHHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchhHHHHHHhhc-------cccCCcEEEE
Confidence 46889999999976543 34443 6778899999999999988765432111000 01111 2456789999
Q ss_pred eeccccccCHHHHHHHHHHHhccCCCeEEE-EEeCCCCCCC------chHHHHHHHHhhCCCCC-----------ccccc
Q 043412 196 VFKWEYRKGWDVLLKAYLEEFSKADGVVLY-LLTNPYHSGR------DFGNKIVNFVEDSDLEK-----------PDDGW 257 (383)
Q Consensus 196 ~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~-i~G~~~~~~~------~~~~~~~~~~~~~~~~~-----------~v~~~ 257 (383)
+||+.+.||++.+++|++.+....++.+++ ++|+++.... .+.+.+.++++++++.+ ++..+
T Consensus 254 vGrl~~~Kg~~~li~A~~~l~~~~~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~~~~~ 333 (439)
T TIGR02472 254 ISRPDRRKNIPSLVEAYGRSPKLQEMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDDVPEL 333 (439)
T ss_pred EcCCcccCCHHHHHHHHHhChhhhhhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHHHHHH
Confidence 999999999999999998642211223333 5676632111 12234555666666643 45567
Q ss_pred cccC----ceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCC-CceeeecccccccccCCCCcccccCCCHHH
Q 043412 258 APAA----DVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDK 332 (383)
Q Consensus 258 ~~~a----di~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 332 (383)
|+.| |++|+||.+|+||++++|||+||+|||+|+.+|..|++.++ +|++++++ |+++
T Consensus 334 ~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~~~~~G~lv~~~------------------d~~~ 395 (439)
T TIGR02472 334 YRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGGPRDIIANCRNGLLVDVL------------------DLEA 395 (439)
T ss_pred HHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCCcHHHhcCCCcEEEeCCC------------------CHHH
Confidence 7766 99999999999999999999999999999999999999885 88888777 9999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043412 333 LRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIK 376 (383)
Q Consensus 333 la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~ 376 (383)
++++|.++++|++.+++|++++++++.++|||+.++++|.++++
T Consensus 396 la~~i~~ll~~~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~~ 439 (439)
T TIGR02472 396 IASALEDALSDSSQWQLWSRNGIEGVRRHYSWDAHVEKYLRILQ 439 (439)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999998763
No 11
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=5.3e-37 Score=296.48 Aligned_cols=245 Identities=13% Similarity=0.102 Sum_probs=186.8
Q ss_pred hcCCCCEEEEeChHHHHHHHh---------cCCCCCCeEEecCCCcCCCCCCCCCCCCcccc---------CCccccccC
Q 043412 121 RCNRMDFVWVPTDFHVSTFIR---------SGVDPAKVVKIVQPVHVGFFDPVNCDPIDLAS---------IGKPVLGLS 182 (383)
Q Consensus 121 ~~~~ad~vi~~s~~~~~~~~~---------~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~---------~~~~~l~~~ 182 (383)
.+..||.|+++|+.+++.+.. ++....++.+|+||||.+.|.|.......... ..+..+ ..
T Consensus 690 GIv~AD~VtTVSptYA~EI~te~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aL-Rk 768 (977)
T PLN02939 690 AIVYSNIVTTVSPTYAQEVRSEGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAAL-RK 768 (977)
T ss_pred HHHhCCeeEeeeHHHHHHHHHHhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHH-HH
Confidence 356799999999999998764 23456799999999999999886532110000 000000 01
Q ss_pred CCCCC---CCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCCCcc-----
Q 043412 183 NMNTS---SKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLEKPD----- 254 (383)
Q Consensus 183 ~~~~~---~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~v----- 254 (383)
.++++ ++.++|+++||+.++||++.+++|+..+.. ++++|+|+|+|+. ..+...++.++..++..+++
T Consensus 769 elGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~--~dvqLVIvGdGp~--~~~e~eL~~La~~l~l~drV~FlG~ 844 (977)
T PLN02939 769 QLGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAE--LGGQFVLLGSSPV--PHIQREFEGIADQFQSNNNIRLILK 844 (977)
T ss_pred HhCCCcccccceEEEEeecCCcccChHHHHHHHHHHhh--cCCEEEEEeCCCc--HHHHHHHHHHHHHcCCCCeEEEEec
Confidence 23344 357899999999999999999999988864 4799999999842 24557777888777654333
Q ss_pred ------ccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCC
Q 043412 255 ------DGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEP 328 (383)
Q Consensus 255 ------~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~ 328 (383)
..+|+.||+|++||++|+||++++|||+||+|+|++++||..|+|.+.++..++ ..+.+|+++++.
T Consensus 845 ~de~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~--------~eg~NGfLf~~~ 916 (977)
T PLN02939 845 YDEALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIP--------VELRNGFTFLTP 916 (977)
T ss_pred cCHHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccc--------cCCCceEEecCC
Confidence 358899999999999999999999999999999999999999998763221111 112456666666
Q ss_pred CHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 043412 329 SVDKLRALMRLVVS----NVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIKDILSS 381 (383)
Q Consensus 329 ~~~~la~~i~~ll~----~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~~~~ 381 (383)
|+++++++|.+++. |++.+.+|++++. .+.|||+.++++|.++|++++.+
T Consensus 917 D~eaLa~AL~rAL~~~~~dpe~~~~L~~~am---~~dFSWe~~A~qYeeLY~~ll~~ 970 (977)
T PLN02939 917 DEQGLNSALERAFNYYKRKPEVWKQLVQKDM---NIDFSWDSSASQYEELYQRAVAR 970 (977)
T ss_pred CHHHHHHHHHHHHHHhccCHHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHHHHHh
Confidence 99999999998775 7999999988763 47899999999999999998764
No 12
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=2.3e-37 Score=285.29 Aligned_cols=295 Identities=17% Similarity=0.177 Sum_probs=215.7
Q ss_pred hhcCCChhhhhHHHHHHhhhcCCCccEEEecCCCCCCCCcccccCCCCCCCCCCCccc-ccceeeeec--CC-CCHHHH-
Q 043412 45 FWEGLPHHMRNLAVELYNTECRTNETVVICHSEPGAWYPPLFDTLPCPPTPGYGDFMA-VIGRTMFET--DR-VSPEHV- 119 (383)
Q Consensus 45 ~~~~~~~~~~~~~~~l~~~~~~~~pDiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~-~~~~~~- 119 (383)
++..+|.........+..++++.+||+||+|...+.......+.....++ ... .++ .+.. .+ ....|.
T Consensus 257 ~~~~~~~~~~~~~~~l~~~ir~~rpDIVHt~~~~a~l~g~laA~lagvpv-----iv~~~h~--~~~~~~~r~~~~e~~~ 329 (578)
T PRK15490 257 LLSHLPPVCKYGIKHLVPHLCERKLDYLSVWQDGACLMIALAALIAGVPR-----IQLGLRG--LPPVVRKRLFKPEYEP 329 (578)
T ss_pred HHhcCChHHHHHHHHHHHHHHHcCCCEEEEcCcccHHHHHHHHHhcCCCE-----EEEeecc--cCCcchhhHHHHHHHH
Confidence 44456655566678888999999999999997554222111111111111 111 111 1100 01 001111
Q ss_pred -H---h-cCCCCEEEEeChHHHHHHHh-cCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEE
Q 043412 120 -K---R-CNRMDFVWVPTDFHVSTFIR-SGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVF 193 (383)
Q Consensus 120 -~---~-~~~ad~vi~~s~~~~~~~~~-~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 193 (383)
. . ...+| +++.|...++.+.+ ++++++++.+||||+|...|.+........ +.....+ ++++.+++
T Consensus 330 ~~~a~~i~~~sd-~v~~s~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~~~~--r~~~~~~-----l~~~~~vI 401 (578)
T PRK15490 330 LYQALAVVPGVD-FMSNNHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVPHKI--WQQFTQK-----TQDADTTI 401 (578)
T ss_pred hhhhceeEecch-hhhccHHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccchhhHHH--HHHhhhc-----cCCCCcEE
Confidence 1 1 34455 77888888898877 689999999999999998877654211000 0111111 23556789
Q ss_pred EEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC---------CccccccccCceE
Q 043412 194 LSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE---------KPDDGWAPAADVF 264 (383)
Q Consensus 194 ~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~adi~ 264 (383)
+++||+.+.||...+++++.++.++.|+++|+++|+| +..++++++++++++. +++..+|+.+|++
T Consensus 402 g~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVGdG-----~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaADVf 476 (578)
T PRK15490 402 GGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVGDG-----DLRAEAQKRAEQLGILERILFVGASRDVGYWLQKMNVF 476 (578)
T ss_pred EEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEeCc-----hhHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhCCEE
Confidence 9999999999999999999998888899999999988 5577888888887765 4567889999999
Q ss_pred EecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCC-CceeeecccccccccCCCCcccccCCCHHHHHHHH---HHH
Q 043412 265 VLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALM---RLV 340 (383)
Q Consensus 265 v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i---~~l 340 (383)
++||.+||||++++|||+||+|||+|+.+|..|++.++ +|++++++ |++++++++ ..+
T Consensus 477 VlPS~~EGfp~vlLEAMA~GlPVVATdvGG~~EiV~dG~nG~LVp~~------------------D~~aLa~ai~lA~aL 538 (578)
T PRK15490 477 ILFSRYEGLPNVLIEAQMVGVPVISTPAGGSAECFIEGVSGFILDDA------------------QTVNLDQACRYAEKL 538 (578)
T ss_pred EEcccccCccHHHHHHHHhCCCEEEeCCCCcHHHcccCCcEEEECCC------------------ChhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999886 88888876 888887776 444
Q ss_pred hcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 043412 341 VSNVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIKD 377 (383)
Q Consensus 341 l~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~ 377 (383)
..+.+.+..|++++++++.++|||+.++++|.++|..
T Consensus 539 ~~ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 539 VNLWRSRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 5555556679999999999999999999999999874
No 13
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=4.2e-37 Score=292.41 Aligned_cols=239 Identities=18% Similarity=0.150 Sum_probs=181.1
Q ss_pred HhcCCCCEEEEeChHHHHHHHh--cC--------CCCCCeEEecCCCcCCCCCCCCCCCCccc---------cCCccccc
Q 043412 120 KRCNRMDFVWVPTDFHVSTFIR--SG--------VDPAKVVKIVQPVHVGFFDPVNCDPIDLA---------SIGKPVLG 180 (383)
Q Consensus 120 ~~~~~ad~vi~~s~~~~~~~~~--~~--------~~~~~i~vi~ngid~~~~~~~~~~~~~~~---------~~~~~~l~ 180 (383)
..+..||.|+++|+..++.+.. ++ .++.++.+|+||+|.+.|.|......... ...+..+
T Consensus 201 ~~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l- 279 (473)
T TIGR02095 201 GGIVYADRVTTVSPTYAREILTPEFGYGLDGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEAL- 279 (473)
T ss_pred HHHHhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHH-
Confidence 3478999999999999988764 22 13569999999999998887543211100 0000000
Q ss_pred cCCCCCCC--CcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC-------
Q 043412 181 LSNMNTSS--KEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE------- 251 (383)
Q Consensus 181 ~~~~~~~~--~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~------- 251 (383)
..+++++. +.++++++||+.++||++.+++|+.++.++ +++|+|+|+|+ +.+.+.+++++.+.+..
T Consensus 280 ~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g~---~~~~~~l~~~~~~~~~~v~~~~~~ 354 (473)
T TIGR02095 280 QEELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPELLEL--GGQLVVLGTGD---PELEEALRELAERYPGNVRVIIGY 354 (473)
T ss_pred HHHcCCCccCCCCEEEEEecCccccChHHHHHHHHHHHHc--CcEEEEECCCC---HHHHHHHHHHHHHCCCcEEEEEcC
Confidence 01222333 789999999999999999999999998754 59999999873 24567777777655421
Q ss_pred --CccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCC
Q 043412 252 --KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPS 329 (383)
Q Consensus 252 --~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 329 (383)
+.+..+|+.||++++||.+|+||++++|||+||+|+|+++.+|..|++.+++.. ..+.+|+++++.|
T Consensus 355 ~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~-----------~~~~~G~l~~~~d 423 (473)
T TIGR02095 355 DEALAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPE-----------AESGTGFLFEEYD 423 (473)
T ss_pred CHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCC-----------CCCCceEEeCCCC
Confidence 224578999999999999999999999999999999999999999999873110 0112344444449
Q ss_pred HHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 043412 330 VDKLRALMRLVVS----NVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIKDI 378 (383)
Q Consensus 330 ~~~la~~i~~ll~----~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~ 378 (383)
+++++++|.+++. |++.+++|++++. .+.|||++++++|.++|+++
T Consensus 424 ~~~la~~i~~~l~~~~~~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 424 PGALLAALSRALRLYRQDPSLWEALQKNAM---SQDFSWDKSAKQYVELYRSL 473 (473)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHh---ccCCCcHHHHHHHHHHHHhC
Confidence 9999999999888 8999999998875 46899999999999999863
No 14
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=4.5e-37 Score=287.96 Aligned_cols=228 Identities=17% Similarity=0.132 Sum_probs=191.0
Q ss_pred cCCCCEEEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeecccc
Q 043412 122 CNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEY 201 (383)
Q Consensus 122 ~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~ 201 (383)
++++|.++++|+..++.+.+.+.++.++.+||||+|.+.+.+..... ....+.+++ ++++.++++++|++.+
T Consensus 169 ~~~ad~ii~~S~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~i~~~G~l~~ 240 (412)
T PRK10307 169 LRRFDNVSTISRSMMNKAREKGVAAEKVIFFPNWSEVARFQPVADAD-VDALRAQLG-------LPDGKKIVLYSGNIGE 240 (412)
T ss_pred HhhCCEEEecCHHHHHHHHHcCCCcccEEEECCCcCHhhcCCCCccc-hHHHHHHcC-------CCCCCEEEEEcCcccc
Confidence 68899999999999999988888888999999999998776543211 001111222 3567899999999999
Q ss_pred ccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC----------CccccccccCceEEecCCCC
Q 043412 202 RKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE----------KPDDGWAPAADVFVLPSRGE 271 (383)
Q Consensus 202 ~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~----------~~v~~~~~~adi~v~ps~~e 271 (383)
.||++.+++|++++. +.++++|+|+|+| +..+.++++++.+++. +++..+++.||++++||..|
T Consensus 241 ~kg~~~li~a~~~l~-~~~~~~l~ivG~g-----~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e 314 (412)
T PRK10307 241 KQGLELVIDAARRLR-DRPDLIFVICGQG-----GGKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMADCHLLPQKAG 314 (412)
T ss_pred ccCHHHHHHHHHHhc-cCCCeEEEEECCC-----hhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhcCEeEEeeccC
Confidence 999999999998874 4688999999988 4467777777766553 34567889999999999988
Q ss_pred C----CChHHHHHHHcCCCEEEcCCCC--ccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHH
Q 043412 272 G----WGRPLVEAMSMGLPVIATNWSG--PTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVD 345 (383)
Q Consensus 272 ~----~~~~~~Ea~a~G~PvI~~~~~g--~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~ 345 (383)
+ +|.+++|||+||+|||+|+.+| ..+++. ++|++++++ |+++++++|.++++|++
T Consensus 315 ~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i~-~~G~~~~~~------------------d~~~la~~i~~l~~~~~ 375 (412)
T PRK10307 315 AADLVLPSKLTNMLASGRNVVATAEPGTELGQLVE-GIGVCVEPE------------------SVEALVAAIAALARQAL 375 (412)
T ss_pred cccccCcHHHHHHHHcCCCEEEEeCCCchHHHHHh-CCcEEeCCC------------------CHHHHHHHHHHHHhCHH
Confidence 7 5778999999999999999876 457777 788888776 99999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcc
Q 043412 346 EAKAKGKQAREDMIQRFSPETVAGIVTDHIKDILSSK 382 (383)
Q Consensus 346 ~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 382 (383)
.+.+|++++++.+.++|||+.+++++.++|++++.++
T Consensus 376 ~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 412 (412)
T PRK10307 376 LRPKLGTVAREYAERTLDKENVLRQFIADIRGLVAER 412 (412)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCC
Confidence 9999999999998899999999999999999998764
No 15
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=2.6e-36 Score=291.00 Aligned_cols=290 Identities=16% Similarity=0.127 Sum_probs=211.4
Q ss_pred hhhHHHHHHhhhcCCCccEEEecCCCCCCCCcccccCC-CCCCCCCCCcccccceeeee-cCCCCHHHH---Hhc--CCC
Q 043412 53 MRNLAVELYNTECRTNETVVICHSEPGAWYPPLFDTLP-CPPTPGYGDFMAVIGRTMFE-TDRVSPEHV---KRC--NRM 125 (383)
Q Consensus 53 ~~~~~~~l~~~~~~~~pDiV~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~--~~a 125 (383)
.....+.+.+++++++|||||+|+....++..+..... .+.+ +...++..... ..++...+. ..+ ..+
T Consensus 385 ~~~~~~~L~~~lk~~kpDIVH~h~~~a~~lg~lAa~~~gvPvI-----v~t~h~~~~~~~~~~~~~~~~~l~~~l~~~~~ 459 (694)
T PRK15179 385 IIEGTTKLTDVMRSSVPSVVHIWQDGSIFACALAALLAGVPRI-----VLSVRTMPPVDRPDRYRVEYDIIYSELLKMRG 459 (694)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHHcCCCEE-----EEEeCCCccccchhHHHHHHHHHHHHHHhcCC
Confidence 34456788899999999999999765533322222111 1111 00111110000 001110111 112 235
Q ss_pred CEEEEeChHHHHHHHh-cCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccC
Q 043412 126 DFVWVPTDFHVSTFIR-SGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKG 204 (383)
Q Consensus 126 d~vi~~s~~~~~~~~~-~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~ 204 (383)
+.++++|+..++.+.+ ++++++++.|||||+|...|.+....... ...+... .+++.++|+++||+.+.||
T Consensus 460 ~i~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~~~~---~~~~~~~-----~~~~~~vIg~VGRL~~~KG 531 (694)
T PRK15179 460 VALSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLKSVQDDACTAM---MAQFDAR-----TSDARFTVGTVMRVDDNKR 531 (694)
T ss_pred eEEEeCcHHHHHHHHHHcCCChhHEEEECCCcCHHhcCCCchhhHH---HHhhccc-----cCCCCeEEEEEEeCCccCC
Confidence 5777778888887766 78888899999999998877543211100 0000000 1345789999999999999
Q ss_pred HHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC---------CccccccccCceEEecCCCCCCCh
Q 043412 205 WDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE---------KPDDGWAPAADVFVLPSRGEGWGR 275 (383)
Q Consensus 205 ~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~adi~v~ps~~e~~~~ 275 (383)
++.+++|+.++.++.|+++|+|+|+| +..+.++++++++++. +++..+|+.+|++++||.+|+||+
T Consensus 532 ~~~LI~A~a~l~~~~p~~~LvIvG~G-----~~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv~VlpS~~Egfp~ 606 (694)
T PRK15179 532 PFLWVEAAQRFAASHPKVRFIMVGGG-----PLLESVREFAQRLGMGERILFTGLSRRVGYWLTQFNAFLLLSRFEGLPN 606 (694)
T ss_pred HHHHHHHHHHHHHHCcCeEEEEEccC-----cchHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcCEEEeccccccchH
Confidence 99999999999888999999999988 4567788888887765 456678999999999999999999
Q ss_pred HHHHHHHcCCCEEEcCCCCccccccCC-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 043412 276 PLVEAMSMGLPVIATNWSGPTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQA 354 (383)
Q Consensus 276 ~~~Ea~a~G~PvI~~~~~g~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a 354 (383)
+++|||+||+|||+|+.+|..|++.++ +|+++++++ .++++++++|.+++.+......+++++
T Consensus 607 vlLEAMA~G~PVVat~~gG~~EiV~dg~~GlLv~~~d----------------~~~~~La~aL~~ll~~l~~~~~l~~~a 670 (694)
T PRK15179 607 VLIEAQFSGVPVVTTLAGGAGEAVQEGVTGLTLPADT----------------VTAPDVAEALARIHDMCAADPGIARKA 670 (694)
T ss_pred HHHHHHHcCCeEEEECCCChHHHccCCCCEEEeCCCC----------------CChHHHHHHHHHHHhChhccHHHHHHH
Confidence 999999999999999999999999886 888887651 135789999998888766666788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 043412 355 REDMIQRFSPETVAGIVTDHIK 376 (383)
Q Consensus 355 ~~~~~~~~s~~~~~~~~~~~~~ 376 (383)
++++.++|||+.+++++.++|+
T Consensus 671 r~~a~~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 671 ADWASARFSLNQMIASTVRCYQ 692 (694)
T ss_pred HHHHHHhCCHHHHHHHHHHHhC
Confidence 9998899999999999999985
No 16
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=1.6e-36 Score=280.58 Aligned_cols=336 Identities=16% Similarity=0.119 Sum_probs=222.8
Q ss_pred CCCCCCChhHHHHHHHHHHHhcccCCCceeeeecCCCcccc--h---hhcC----CChhhhhHHHH-----HHhhhcCCC
Q 043412 3 PFLSGGGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQSL--Q---FWEG----LPHHMRNLAVE-----LYNTECRTN 68 (383)
Q Consensus 3 p~~~~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~--~---~~~~----~~~~~~~~~~~-----l~~~~~~~~ 68 (383)
+-+..||+++++.++++.|.+.|+...+... ...++.... . ...+ ++......+.. ..+.+...+
T Consensus 7 ~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (372)
T cd03792 7 STPYGGGVAEILHSLVPLMRDLGVDTRWEVI-KGDPEFFNVTKKFHNALQGADIELSEEEKEIYLEWNEENAERPLLDLD 85 (372)
T ss_pred CCCCCCcHHHHHHHHHHHHHHcCCCceEEec-CCChhHHHHHHHhhHhhcCCCCCCCHHHHHHHHHHHHHHhccccccCC
Confidence 4458899999999999999999987765332 111111110 0 0111 22221111111 111234679
Q ss_pred ccEEEecCCCCCCCCcccccC-CCCCCCCCCCcccccceeeeecCCCCHHHHHhcCCCCEEEEeChHHHHHHHhcCCCCC
Q 043412 69 ETVVICHSEPGAWYPPLFDTL-PCPPTPGYGDFMAVIGRTMFETDRVSPEHVKRCNRMDFVWVPTDFHVSTFIRSGVDPA 147 (383)
Q Consensus 69 pDiV~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~~~~~~ 147 (383)
||+||+|+....... .+... ..+. +.+.+.................++++|.+++.|.. +...+++..
T Consensus 86 ~Dvv~~h~~~~~~~~-~~~~~~~~~~------i~~~H~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~----~~~~~~~~~ 154 (372)
T cd03792 86 ADVVVIHDPQPLALP-LFKKKRGRPW------IWRCHIDLSSPNRRVWDFLQPYIEDYDAAVFHLPE----YVPPQVPPR 154 (372)
T ss_pred CCEEEECCCCchhHH-HhhhcCCCeE------EEEeeeecCCCcHHHHHHHHHHHHhCCEEeecHHH----hcCCCCCCc
Confidence 999999976532211 11111 1111 11222111000001111223346889999988832 223345555
Q ss_pred CeEEecCCCcCCCCCCCCCCCC-ccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEE
Q 043412 148 KVVKIVQPVHVGFFDPVNCDPI-DLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYL 226 (383)
Q Consensus 148 ~i~vi~ngid~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i 226 (383)
++ ++|||+|............ ....+.++ +++++.++++++||+.+.||++.+++|+..+.++.++++|++
T Consensus 155 ~~-vipngvd~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i 226 (372)
T cd03792 155 KV-IIPPSIDPLSGKNRELSPADIEYILEKY-------GIDPERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVL 226 (372)
T ss_pred eE-EeCCCCCCCccccCCCCHHHHHHHHHHh-------CCCCCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEE
Confidence 55 9999999753111111100 00111122 245788999999999999999999999999988889999999
Q ss_pred EeCCCCCCCchHHHHHHHHhhCCCC-------------CccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCC
Q 043412 227 LTNPYHSGRDFGNKIVNFVEDSDLE-------------KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWS 293 (383)
Q Consensus 227 ~G~~~~~~~~~~~~~~~~~~~~~~~-------------~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~ 293 (383)
+|+|+..+....+.++++.+..+.. +++..+|+.||++++||.+||||++++|||+||+|||+|+.+
T Consensus 227 ~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~ 306 (372)
T cd03792 227 VGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVG 306 (372)
T ss_pred EeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCC
Confidence 9998653333333344444333322 345578899999999999999999999999999999999999
Q ss_pred CccccccCC-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043412 294 GPTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVT 372 (383)
Q Consensus 294 g~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~ 372 (383)
|..+++.++ +|++++ +.++++++|.++++|++.+++|++++++.+.++|||+.+++++.
T Consensus 307 ~~~~~i~~~~~g~~~~--------------------~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~ 366 (372)
T cd03792 307 GIPLQIEDGETGFLVD--------------------TVEEAAVRILYLLRDPELRRKMGANAREHVRENFLITRHLKDYL 366 (372)
T ss_pred CchhhcccCCceEEeC--------------------CcHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 999999875 787776 67789999999999999999999999998889999999999999
Q ss_pred HHHHHH
Q 043412 373 DHIKDI 378 (383)
Q Consensus 373 ~~~~~~ 378 (383)
++|+++
T Consensus 367 ~~~~~~ 372 (372)
T cd03792 367 YLISKL 372 (372)
T ss_pred HHHHhC
Confidence 999863
No 17
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=9.2e-37 Score=288.14 Aligned_cols=239 Identities=15% Similarity=0.167 Sum_probs=180.5
Q ss_pred HhcCCCCEEEEeChHHHHHHHh-----cCCC------CCCeEEecCCCcCCCCCCCCCCCCccccC---------Ccccc
Q 043412 120 KRCNRMDFVWVPTDFHVSTFIR-----SGVD------PAKVVKIVQPVHVGFFDPVNCDPIDLASI---------GKPVL 179 (383)
Q Consensus 120 ~~~~~ad~vi~~s~~~~~~~~~-----~~~~------~~~i~vi~ngid~~~~~~~~~~~~~~~~~---------~~~~l 179 (383)
..+..||.|+++|+..++.+.. +|.+ +.++.+|+||+|.+.|.|........... .+..+
T Consensus 216 ~~i~~ad~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l 295 (489)
T PRK14098 216 TGVEHADLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKAL 295 (489)
T ss_pred HHHHhcCcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHH
Confidence 3468899999999999998865 2332 57999999999999998765322111000 00000
Q ss_pred ccCCCCC--CCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC------
Q 043412 180 GLSNMNT--SSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE------ 251 (383)
Q Consensus 180 ~~~~~~~--~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~------ 251 (383)
...+++ +++.++++++||+.++||++.+++|+.++.+ ++++|+|+|+|+ ..+.+.++++++.++-.
T Consensus 296 -~~~lgl~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~--~~~~lvivG~G~---~~~~~~l~~l~~~~~~~V~~~g~ 369 (489)
T PRK14098 296 -LEEVGLPFDEETPLVGVIINFDDFQGAELLAESLEKLVE--LDIQLVICGSGD---KEYEKRFQDFAEEHPEQVSVQTE 369 (489)
T ss_pred -HHHhCCCCccCCCEEEEeccccccCcHHHHHHHHHHHHh--cCcEEEEEeCCC---HHHHHHHHHHHHHCCCCEEEEEe
Confidence 011222 3567899999999999999999999999875 389999999873 23567788887765421
Q ss_pred ---CccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCC
Q 043412 252 ---KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEP 328 (383)
Q Consensus 252 ---~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~ 328 (383)
+.+..+|+.||++++||.+|+||++.+|||+||+|+|+++.||..|.+.+.. .++.+|+++++.
T Consensus 370 ~~~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~-------------~~~~~G~l~~~~ 436 (489)
T PRK14098 370 FTDAFFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVS-------------EDKGSGFIFHDY 436 (489)
T ss_pred cCHHHHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCC-------------CCCCceeEeCCC
Confidence 2346788999999999999999999999999999999999999999886410 001234444444
Q ss_pred CHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 043412 329 SVDKLRALMRLVV---SNVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIKDILS 380 (383)
Q Consensus 329 ~~~~la~~i~~ll---~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~~~ 380 (383)
|+++++++|.+++ +|++.+.++++++ +.+.|||+.++++|.++|+++++
T Consensus 437 d~~~la~ai~~~l~~~~~~~~~~~~~~~~---~~~~fsw~~~a~~y~~lY~~~~~ 488 (489)
T PRK14098 437 TPEALVAKLGEALALYHDEERWEELVLEA---MERDFSWKNSAEEYAQLYRELLG 488 (489)
T ss_pred CHHHHHHHHHHHHHHHcCHHHHHHHHHHH---hcCCCChHHHHHHHHHHHHHHhc
Confidence 9999999999865 6888888887766 35789999999999999999874
No 18
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=8.1e-36 Score=275.41 Aligned_cols=227 Identities=19% Similarity=0.250 Sum_probs=186.0
Q ss_pred cCCCCEEEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeecccc
Q 043412 122 CNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEY 201 (383)
Q Consensus 122 ~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~ 201 (383)
+.+++.++++|++.++.+.+.. +..++.+||||+|.+.|.+...... +.+.+ ++++..+++++||+.+
T Consensus 137 ~~~~~~ii~~S~~~~~~~~~~~-~~~~i~vIpngvd~~~~~~~~~~~~----~~~~~-------~~~~~~~il~~Grl~~ 204 (380)
T PRK15484 137 LDKNAKIIVPSQFLKKFYEERL-PNADISIVPNGFCLETYQSNPQPNL----RQQLN-------ISPDETVLLYAGRISP 204 (380)
T ss_pred hccCCEEEEcCHHHHHHHHhhC-CCCCEEEecCCCCHHHcCCcchHHH----HHHhC-------CCCCCeEEEEeccCcc
Confidence 3578999999999999988753 5568999999999887765322110 11122 3456789999999999
Q ss_pred ccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCC----CchHHHHHHHHhhCCCC---------CccccccccCceEEecC
Q 043412 202 RKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSG----RDFGNKIVNFVEDSDLE---------KPDDGWAPAADVFVLPS 268 (383)
Q Consensus 202 ~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~----~~~~~~~~~~~~~~~~~---------~~v~~~~~~adi~v~ps 268 (383)
.||++.+++|+..+.++.|+++|+++|+++... ..+.+.+++++..++.. +++..+|+.||++++||
T Consensus 205 ~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~aDv~v~pS 284 (380)
T PRK15484 205 DKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPLADLVVVPS 284 (380)
T ss_pred ccCHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHhCCEEEeCC
Confidence 999999999999998889999999999885421 23445566666554421 46788999999999999
Q ss_pred CC-CCCChHHHHHHHcCCCEEEcCCCCccccccCC-Ccee-eecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHH
Q 043412 269 RG-EGWGRPLVEAMSMGLPVIATNWSGPTEYLTEE-NGYP-LLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVD 345 (383)
Q Consensus 269 ~~-e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~-~g~~-~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~ 345 (383)
.+ |+||++++|||+||+|||+|+.+|..|++.++ +|++ +++. |+++++++|.++++|++
T Consensus 285 ~~~E~f~~~~lEAma~G~PVI~s~~gg~~Eiv~~~~~G~~l~~~~------------------d~~~la~~I~~ll~d~~ 346 (380)
T PRK15484 285 QVEEAFCMVAVEAMAAGKPVLASTKGGITEFVLEGITGYHLAEPM------------------TSDSIISDINRTLADPE 346 (380)
T ss_pred CCccccccHHHHHHHcCCCEEEeCCCCcHhhcccCCceEEEeCCC------------------CHHHHHHHHHHHHcCHH
Confidence 75 99999999999999999999999999999886 8874 4555 99999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 043412 346 EAKAKGKQAREDMIQRFSPETVAGIVTDHIKDIL 379 (383)
Q Consensus 346 ~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~~ 379 (383)
. .+|++++++.+.++|||+.+++++.++|++..
T Consensus 347 ~-~~~~~~ar~~~~~~fsw~~~a~~~~~~l~~~~ 379 (380)
T PRK15484 347 L-TQIAEQAKDFVFSKYSWEGVTQRFEEQIHNWF 379 (380)
T ss_pred H-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 5 77999999998999999999999999998754
No 19
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=2.9e-36 Score=277.27 Aligned_cols=327 Identities=21% Similarity=0.185 Sum_probs=236.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcccCCCceeeeecCCCcccc-----------hhhcCCChhhhhHHHHHHhhhcCCCcc
Q 043412 2 APFLSGGGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQSL-----------QFWEGLPHHMRNLAVELYNTECRTNET 70 (383)
Q Consensus 2 ~p~~~~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~pD 70 (383)
-|-++.||.++++.++++.|.++|+...+ ... .+..... .....-+.........+.+.+++.+||
T Consensus 4 ~~~~~~gG~e~~~~~l~~~L~~~g~~v~v--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d 80 (355)
T cd03819 4 LPALESGGVERGTLELARALVERGHRSLV--ASA-GGRLVAELEAEGSRHIKLPFISKNPLRILLNVARLRRLIREEKVD 80 (355)
T ss_pred chhhccCcHHHHHHHHHHHHHHcCCEEEE--EcC-CCchHHHHHhcCCeEEEccccccchhhhHHHHHHHHHHHHHcCCC
Confidence 47788999999999999999999976543 221 1111000 000001112233456677788899999
Q ss_pred EEEecCCCCCCCCcccccCCCCCCCCCCCcccccceeeeecCCCCHHHHHhcCCCCEEEEeChHHHHHHHh-cCCCCCCe
Q 043412 71 VVICHSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETDRVSPEHVKRCNRMDFVWVPTDFHVSTFIR-SGVDPAKV 149 (383)
Q Consensus 71 iV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~-~~~~~~~i 149 (383)
+||+|+....|...+...... .+.+...++.+.. ...+...++++|.++++|+..++.+.+ ++.+.+++
T Consensus 81 ii~~~~~~~~~~~~~~~~~~~-----~~~i~~~h~~~~~-----~~~~~~~~~~~~~vi~~s~~~~~~~~~~~~~~~~k~ 150 (355)
T cd03819 81 IVHARSRAPAWSAYLAARRTR-----PPFVTTVHGFYSV-----NFRYNAIMARGDRVIAVSNFIADHIRENYGVDPDRI 150 (355)
T ss_pred EEEECCCchhHHHHHHHHhcC-----CCEEEEeCCchhh-----HHHHHHHHHhcCEEEEeCHHHHHHHHHhcCCChhhE
Confidence 999997655443322221111 1112222332211 113344568899999999999999985 88888899
Q ss_pred EEecCCCcCCCCCCCCCCCCccc-cCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEe
Q 043412 150 VKIVQPVHVGFFDPVNCDPIDLA-SIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLT 228 (383)
Q Consensus 150 ~vi~ngid~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G 228 (383)
.+||||+|...+.+......... .+.+.. .+++.++++++|++.+.||++.+++++..+.++.++++++++|
T Consensus 151 ~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG 223 (355)
T cd03819 151 RVIPRGVDLDRFDPGAVPPERILALAREWP-------LPKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVG 223 (355)
T ss_pred EEecCCccccccCccccchHHHHHHHHHcC-------CCCCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 99999999987765432111000 011111 2467889999999999999999999999998888899999999
Q ss_pred CCCCCCCchHHHHHHHHhhCC---------CCCccccccccCceEEecC-CCCCCChHHHHHHHcCCCEEEcCCCCcccc
Q 043412 229 NPYHSGRDFGNKIVNFVEDSD---------LEKPDDGWAPAADVFVLPS-RGEGWGRPLVEAMSMGLPVIATNWSGPTEY 298 (383)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~adi~v~ps-~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~ 298 (383)
.+... ..+.+.+.+.+.+++ ..+++..+++.||++++|| ..|++|++++|||+||+|||+++.++..|+
T Consensus 224 ~~~~~-~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~~~e~ 302 (355)
T cd03819 224 DAQGR-RFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGGARET 302 (355)
T ss_pred CCccc-chHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCCcHHH
Confidence 88532 234444544555444 3467788999999999999 799999999999999999999999999999
Q ss_pred ccCC-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhcCCHHHH
Q 043412 299 LTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVV-SNVDEAKAKGKQAREDMIQRFSPETV 367 (383)
Q Consensus 299 v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll-~~~~~~~~~~~~a~~~~~~~~s~~~~ 367 (383)
+.++ +|++++++ |+++++++|..++ .+++.+.+|+++|++.+.++|+|+.+
T Consensus 303 i~~~~~g~~~~~~------------------~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f~~~~~ 355 (355)
T cd03819 303 VRPGETGLLVPPG------------------DAEALAQALDQILSLLPEGRAKMFAKARMCVETLFSYDRM 355 (355)
T ss_pred HhCCCceEEeCCC------------------CHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhhccC
Confidence 9886 88888776 9999999996555 48999999999999999999999863
No 20
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=3.8e-36 Score=279.93 Aligned_cols=226 Identities=20% Similarity=0.206 Sum_probs=186.6
Q ss_pred hcCCCCEEEEeChHHHHHHHh-c-CCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeec
Q 043412 121 RCNRMDFVWVPTDFHVSTFIR-S-GVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFK 198 (383)
Q Consensus 121 ~~~~ad~vi~~s~~~~~~~~~-~-~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~ 198 (383)
.++.+|.++++|+..++.+.+ + +.++.++.+||||+|.+.+.+..... ...+.+ ++++.++++++||
T Consensus 141 ~~~~ad~vi~~S~~~~~~~~~~~~~~~~~~i~vi~ng~~~~~~~~~~~~~----~~~~~~-------~~~~~~~i~~~Gr 209 (388)
T TIGR02149 141 AIEAADRVIAVSGGMREDILKYYPDLDPEKVHVIYNGIDTKEYKPDDGNV----VLDRYG-------IDRSRPYILFVGR 209 (388)
T ss_pred HHhhCCEEEEccHHHHHHHHHHcCCCCcceEEEecCCCChhhcCCCchHH----HHHHhC-------CCCCceEEEEEcc
Confidence 378999999999999998887 4 56677999999999988776532211 011222 3567889999999
Q ss_pred cccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCC-------------CCccccccccCceEE
Q 043412 199 WEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDL-------------EKPDDGWAPAADVFV 265 (383)
Q Consensus 199 ~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~~~~adi~v 265 (383)
+.+.||++.+++|++++. ++++++++|++.. ..++.+.+++.+..++. .+++..+|+.||+++
T Consensus 210 l~~~Kg~~~li~a~~~l~---~~~~l~i~g~g~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v 285 (388)
T TIGR02149 210 ITRQKGVPHLLDAVHYIP---KDVQVVLCAGAPD-TPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFV 285 (388)
T ss_pred cccccCHHHHHHHHHHHh---hcCcEEEEeCCCC-cHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEE
Confidence 999999999999999874 4788999887643 22345566665554433 145678899999999
Q ss_pred ecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCC-CceeeecccccccccCCCCcccccCCCH------HHHHHHHH
Q 043412 266 LPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSV------DKLRALMR 338 (383)
Q Consensus 266 ~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~------~~la~~i~ 338 (383)
+||..|++|++++|||+||+|||+|+.++..|++.++ +|++++++ |+ ++++++|.
T Consensus 286 ~ps~~e~~g~~~lEA~a~G~PvI~s~~~~~~e~i~~~~~G~~~~~~------------------~~~~~~~~~~l~~~i~ 347 (388)
T TIGR02149 286 CPSIYEPLGIVNLEAMACGTPVVASATGGIPEVVVDGETGFLVPPD------------------NSDADGFQAELAKAIN 347 (388)
T ss_pred eCCccCCCChHHHHHHHcCCCEEEeCCCCHHHHhhCCCceEEcCCC------------------CCcccchHHHHHHHHH
Confidence 9999999999999999999999999999999999885 88888765 66 99999999
Q ss_pred HHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 043412 339 LVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIKDIL 379 (383)
Q Consensus 339 ~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~~ 379 (383)
++++|++.+++|++++++.+.++|||+.+++++.++|++++
T Consensus 348 ~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~y~~~~ 388 (388)
T TIGR02149 348 ILLADPELAKKMGIAGRKRAEEEFSWGSIAKKTVEMYRKVL 388 (388)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999998899999999999999999864
No 21
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=8.1e-36 Score=274.25 Aligned_cols=336 Identities=21% Similarity=0.214 Sum_probs=240.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcccCCCceeeeecCCCcccchhhcCCC---------hhhhhHHHHHHhhhcCCCccEE
Q 043412 2 APFLSGGGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQSLQFWEGLP---------HHMRNLAVELYNTECRTNETVV 72 (383)
Q Consensus 2 ~p~~~~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~pDiV 72 (383)
.|-+.+||.+..+.++++.|.+.|+...+.. ....+...+...-.+.+ .........+.+++++.+||+|
T Consensus 6 ~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~-~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~div 84 (365)
T cd03807 6 ITGLDVGGAERMLVRLLKGLDRDRFEHVVIS-LTDRGELGEELEEAGVPVYCLGKRPGRPDPGALLRLYKLIRRLRPDVV 84 (365)
T ss_pred EeeccCccHHHHHHHHHHHhhhccceEEEEe-cCcchhhhHHHHhcCCeEEEEecccccccHHHHHHHHHHHHhhCCCEE
Confidence 4566789999999999999988877544322 22211111000000111 1233455677888889999999
Q ss_pred EecCCCCCCCCcccccC-CCCCCCCCCCcccccceeeee---cCCCCHH-HHHhcCCCCEEEEeChHHHHHHHhcCCCCC
Q 043412 73 ICHSEPGAWYPPLFDTL-PCPPTPGYGDFMAVIGRTMFE---TDRVSPE-HVKRCNRMDFVWVPTDFHVSTFIRSGVDPA 147 (383)
Q Consensus 73 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~ad~vi~~s~~~~~~~~~~~~~~~ 147 (383)
|+|.....+........ ..... +...++..... ....... .....+.+|.++++|+..++.+.+.+.+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~ 159 (365)
T cd03807 85 HTWMYHADLYGGLAARLAGVPPV-----IWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVANSAAAAEYHQAIGYPPK 159 (365)
T ss_pred EeccccccHHHHHHHHhcCCCcE-----EEEecCCcccccchhHhHHHHHHHHhccccCeEEeccHHHHHHHHHcCCChh
Confidence 99965433222121111 11111 11112211110 0111111 122257789999999999999999888888
Q ss_pred CeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEE
Q 043412 148 KVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLL 227 (383)
Q Consensus 148 ~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~ 227 (383)
++.++|||+|...+.+........ +.++ +++++.++++++|++.+.||++.+++++..+.++.++++|+++
T Consensus 160 ~~~vi~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~ 230 (365)
T cd03807 160 KIVVIPNGVDTERFSPDLDARARL--REEL-------GLPEDTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLV 230 (365)
T ss_pred heeEeCCCcCHHhcCCcccchHHH--HHhc-------CCCCCCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 999999999987765543321110 1122 2356789999999999999999999999999888899999999
Q ss_pred eCCCCCCCchHHHHHHHHh-hCCC---------CCccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccc
Q 043412 228 TNPYHSGRDFGNKIVNFVE-DSDL---------EKPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTE 297 (383)
Q Consensus 228 G~~~~~~~~~~~~~~~~~~-~~~~---------~~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e 297 (383)
|.+.. ......... ..++ .+++..+|+.||++++||..|++|++++|||+||+|||+++.++..+
T Consensus 231 G~~~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~~~~e 305 (365)
T cd03807 231 GDGPD-----RANLELLALKELGLEDKVILLGERSDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVGDNAE 305 (365)
T ss_pred cCCcc-----hhHHHHHHHHhcCCCceEEEccccccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCCChHH
Confidence 98732 233333333 3333 35677899999999999999999999999999999999999999999
Q ss_pred cccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043412 298 YLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIK 376 (383)
Q Consensus 298 ~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~ 376 (383)
++.+ +|++++.+ |+++++++|.++++|++.+.++++++++.+.++|||+.+++++.++|+
T Consensus 306 ~~~~-~g~~~~~~------------------~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 365 (365)
T cd03807 306 LVGD-TGFLVPPG------------------DPEALAEAIEALLADPALRQALGEAARERIEENFSIEAMVEAYEELYR 365 (365)
T ss_pred Hhhc-CCEEeCCC------------------CHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 9988 88888776 999999999999999999999999999999999999999999999874
No 22
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=100.00 E-value=7.4e-36 Score=274.42 Aligned_cols=324 Identities=17% Similarity=0.175 Sum_probs=223.7
Q ss_pred CCCCC-CCChhHHHHHHHHHHHhcccCCCceeeeecCCCccc----chh---hcC--CC-hhhhhHHHHHHhhhcCCCcc
Q 043412 2 APFLS-GGGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQS----LQF---WEG--LP-HHMRNLAVELYNTECRTNET 70 (383)
Q Consensus 2 ~p~~~-~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~----~~~---~~~--~~-~~~~~~~~~l~~~~~~~~pD 70 (383)
.+++. .||.++++.+++++|.+.|+...+.+.......... ... ... ++ .........+.+++++.+||
T Consensus 7 ~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D 86 (359)
T PRK09922 7 GEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKAWLKEIKYAQSFSNIKLSFLRRAKHVYNFSKWLKETQPD 86 (359)
T ss_pred cccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChHHHHhcchhcccccchhhhhcccHHHHHHHHHHHhcCCC
Confidence 34543 499999999999999999443333333332221100 000 000 11 11123456778889999999
Q ss_pred EEEecCCCCCCCCcccccCCCCCCCCCCCcccccceeeeecCCCCHHHHHhcCCCCEEEEeChHHHHHHHhcCCCCCCeE
Q 043412 71 VVICHSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETDRVSPEHVKRCNRMDFVWVPTDFHVSTFIRSGVDPAKVV 150 (383)
Q Consensus 71 iV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~~~~~~~i~ 150 (383)
+||+|+....+............. ......+. ... .... .....+..+|.++++|+..++.+.+++++++++.
T Consensus 87 ii~~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~--~~~-~~~~-~~~~~~~~~d~~i~~S~~~~~~~~~~~~~~~ki~ 159 (359)
T PRK09922 87 IVICIDVISCLYANKARKKSGKQF---KIFSWPHF--SLD-HKKH-AECKKITCADYHLAISSGIKEQMMARGISAQRIS 159 (359)
T ss_pred EEEEcCHHHHHHHHHHHHHhCCCC---eEEEEecC--ccc-ccch-hhhhhhhcCCEEEEcCHHHHHHHHHcCCCHHHEE
Confidence 999997544332222221111111 00001010 000 0011 1112247899999999999999999888888999
Q ss_pred EecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccc--cccCHHHHHHHHHHHhccCCCeEEEEEe
Q 043412 151 KIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWE--YRKGWDVLLKAYLEEFSKADGVVLYLLT 228 (383)
Q Consensus 151 vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~--~~K~~~~ll~a~~~l~~~~~~~~l~i~G 228 (383)
+||||+|.+.+...... .++.++++++||+. +.||++.+++++..+. ++++|+++|
T Consensus 160 vi~N~id~~~~~~~~~~-------------------~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~---~~~~l~ivG 217 (359)
T PRK09922 160 VIYNPVEIKTIIIPPPE-------------------RDKPAVFLYVGRLKFEGQKNVKELFDGLSQTT---GEWQLHIIG 217 (359)
T ss_pred EEcCCCCHHHccCCCcc-------------------cCCCcEEEEEEEEecccCcCHHHHHHHHHhhC---CCeEEEEEe
Confidence 99999996543321111 23467899999986 4699999999998773 379999999
Q ss_pred CCCCCCCchHHHHHHHHhhCCCCCcc-------------ccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcC-CCC
Q 043412 229 NPYHSGRDFGNKIVNFVEDSDLEKPD-------------DGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATN-WSG 294 (383)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~v-------------~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~-~~g 294 (383)
+| +..+.+++.++++++.+++ ..+|+.+|++++||.+||||++++||||||+|||+++ .+|
T Consensus 218 ~g-----~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g 292 (359)
T PRK09922 218 DG-----SDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG 292 (359)
T ss_pred CC-----ccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCC
Confidence 98 4467788888877765333 3456789999999999999999999999999999999 899
Q ss_pred ccccccCC-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043412 295 PTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVTD 373 (383)
Q Consensus 295 ~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~ 373 (383)
..|++.++ +|++++++ |+++++++|.++++|++.+. .++......+|+.+.+.+++.+
T Consensus 293 ~~eiv~~~~~G~lv~~~------------------d~~~la~~i~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 351 (359)
T PRK09922 293 PRDIIKPGLNGELYTPG------------------NIDEFVGKLNKVISGEVKYQ---HDAIPNSIERFYEVLYFKNLNN 351 (359)
T ss_pred hHHHccCCCceEEECCC------------------CHHHHHHHHHHHHhCcccCC---HHHHHHHHHHhhHHHHHHHHHH
Confidence 99999886 78887766 99999999999999998542 2222224567888999999999
Q ss_pred HHHHHHh
Q 043412 374 HIKDILS 380 (383)
Q Consensus 374 ~~~~~~~ 380 (383)
+|.++++
T Consensus 352 ~~~~~~~ 358 (359)
T PRK09922 352 ALFSKLQ 358 (359)
T ss_pred HHHHHhc
Confidence 9998875
No 23
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=5.1e-36 Score=284.39 Aligned_cols=219 Identities=18% Similarity=0.195 Sum_probs=194.0
Q ss_pred cCCCCEEEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeecccc
Q 043412 122 CNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEY 201 (383)
Q Consensus 122 ~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~ 201 (383)
+++||.|+++|+..++.+.++|.+++|+.+||||+|.+.|.+..... ..++.++++++||+.+
T Consensus 242 ~~~ad~Ii~~s~~~~~~~~~~g~~~~ki~vIpNgid~~~f~~~~~~~-----------------~~~~~~~i~~vGrl~~ 304 (475)
T cd03813 242 YQAADRITTLYEGNRERQIEDGADPEKIRVIPNGIDPERFAPARRAR-----------------PEKEPPVVGLIGRVVP 304 (475)
T ss_pred HHhCCEEEecCHHHHHHHHHcCCCHHHeEEeCCCcCHHHcCCccccc-----------------cCCCCcEEEEEecccc
Confidence 68999999999999998888998889999999999998876643310 1356789999999999
Q ss_pred ccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC--------CccccccccCceEEecCCCCCC
Q 043412 202 RKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE--------KPDDGWAPAADVFVLPSRGEGW 273 (383)
Q Consensus 202 ~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~--------~~v~~~~~~adi~v~ps~~e~~ 273 (383)
.||++.+++|++.+.++.|+++++|+|+++. +..+.++++++++++++. +++..+|+.+|++++||..|++
T Consensus 305 ~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~-~~~~~~e~~~li~~l~l~~~V~f~G~~~v~~~l~~aDv~vlpS~~Eg~ 383 (475)
T cd03813 305 IKDIKTFIRAAAIVRKKIPDAEGWVIGPTDE-DPEYAEECRELVESLGLEDNVKFTGFQNVKEYLPKLDVLVLTSISEGQ 383 (475)
T ss_pred ccCHHHHHHHHHHHHHhCCCeEEEEECCCCc-ChHHHHHHHHHHHHhCCCCeEEEcCCccHHHHHHhCCEEEeCchhhcC
Confidence 9999999999999998899999999998752 346778888888888775 4556788999999999999999
Q ss_pred ChHHHHHHHcCCCEEEcCCCCccccccC------C-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHH
Q 043412 274 GRPLVEAMSMGLPVIATNWSGPTEYLTE------E-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDE 346 (383)
Q Consensus 274 ~~~~~Ea~a~G~PvI~~~~~g~~e~v~~------~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~ 346 (383)
|++++|||+||+|||+|+.++..|++.+ + +|+++++. |+++++++|.++++|++.
T Consensus 384 p~~vlEAma~G~PVVatd~g~~~elv~~~~~~~~g~~G~lv~~~------------------d~~~la~ai~~ll~~~~~ 445 (475)
T cd03813 384 PLVILEAMAAGIPVVATDVGSCRELIEGADDEALGPAGEVVPPA------------------DPEALARAILRLLKDPEL 445 (475)
T ss_pred ChHHHHHHHcCCCEEECCCCChHHHhcCCcccccCCceEEECCC------------------CHHHHHHHHHHHhcCHHH
Confidence 9999999999999999999999999988 2 66666655 999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043412 347 AKAKGKQAREDMIQRFSPETVAGIVTDHIK 376 (383)
Q Consensus 347 ~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~ 376 (383)
+++|++++++++.+.|+|+.++++|.++|+
T Consensus 446 ~~~~~~~a~~~v~~~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 446 RRAMGEAGRKRVERYYTLERMIDSYRRLYL 475 (475)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 999999999999999999999999999984
No 24
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=1.8e-35 Score=290.11 Aligned_cols=239 Identities=16% Similarity=0.168 Sum_probs=184.7
Q ss_pred cCCCCEEEEeChHHHHHHHh-cC-CC---------------------CCCeEEecCCCcCCCCCCCCCCCCccc------
Q 043412 122 CNRMDFVWVPTDFHVSTFIR-SG-VD---------------------PAKVVKIVQPVHVGFFDPVNCDPIDLA------ 172 (383)
Q Consensus 122 ~~~ad~vi~~s~~~~~~~~~-~~-~~---------------------~~~i~vi~ngid~~~~~~~~~~~~~~~------ 172 (383)
+..||.||+.|...++.+.. |+ .+ ..++.|||||+|++.|.|.........
T Consensus 379 l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~ 458 (1050)
T TIGR02468 379 LDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEH 458 (1050)
T ss_pred HHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccc
Confidence 78999999999999986444 42 11 238999999999999988543211000
Q ss_pred -cCCcccc--ccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhcc--CCCeEEEEEeCCCCC------CCchHHHH
Q 043412 173 -SIGKPVL--GLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSK--ADGVVLYLLTNPYHS------GRDFGNKI 241 (383)
Q Consensus 173 -~~~~~~l--~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~--~~~~~l~i~G~~~~~------~~~~~~~~ 241 (383)
......+ ........+++++|+++||+.++||++.+++|+..+.+. .+++. +|+|+++.. ..++...+
T Consensus 459 ~~~~~~~~~~~l~r~~~~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L 537 (1050)
T TIGR02468 459 PAKPDPPIWSEIMRFFTNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDDIDEMSSGSSSVLTSV 537 (1050)
T ss_pred cccccchhhHHHHhhcccCCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecCchhhhhhccchHHHHHH
Confidence 0000000 000011256788999999999999999999999988653 34665 456765321 12334667
Q ss_pred HHHHhhCCCCCc-----------cccccccC----ceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCC-Cce
Q 043412 242 VNFVEDSDLEKP-----------DDGWAPAA----DVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEE-NGY 305 (383)
Q Consensus 242 ~~~~~~~~~~~~-----------v~~~~~~a----di~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~-~g~ 305 (383)
..+++.+++.+. +..+|+.| |+||+||.+|+||++++||||||+|||+|+.+|..|++.++ +|+
T Consensus 538 ~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG~~EII~~g~nGl 617 (1050)
T TIGR02468 538 LKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIHRVLDNGL 617 (1050)
T ss_pred HHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCCcHHHhccCCcEE
Confidence 788888887643 45677766 69999999999999999999999999999999999999885 888
Q ss_pred eeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 043412 306 PLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIKDILS 380 (383)
Q Consensus 306 ~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~~~ 380 (383)
++++. |+++|+++|.++++|++.+++|++++++.+ ++|+|+.++++|.+.+..++.
T Consensus 618 LVdP~------------------D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v-~~FSWe~ia~~yl~~i~~~~~ 673 (1050)
T TIGR02468 618 LVDPH------------------DQQAIADALLKLVADKQLWAECRQNGLKNI-HLFSWPEHCKTYLSRIASCRP 673 (1050)
T ss_pred EECCC------------------CHHHHHHHHHHHhhCHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHhc
Confidence 88877 999999999999999999999999999986 579999999999999998764
No 25
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=2.6e-35 Score=271.36 Aligned_cols=334 Identities=17% Similarity=0.165 Sum_probs=233.4
Q ss_pred CCCCCCChhHHHHHHHHHHHhcccCCCceeeeecCCCcccchh---h-----cCCChhhhhHHHHHHhhhcCCCccEEEe
Q 043412 3 PFLSGGGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQSLQF---W-----EGLPHHMRNLAVELYNTECRTNETVVIC 74 (383)
Q Consensus 3 p~~~~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~l~~~~~~~~pDiV~~ 74 (383)
+-+..||.++.+.++++.|.++|+...+..... ......... . ...+.........+.+++++.+||+||+
T Consensus 7 ~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdiv~~ 85 (360)
T cd04951 7 TGLGLGGAEKQVVDLADQFVAKGHQVAIISLTG-ESEVKPPIDATIILNLNMSKNPLSFLLALWKLRKILRQFKPDVVHA 85 (360)
T ss_pred cCCCCCCHHHHHHHHHHhcccCCceEEEEEEeC-CCCccchhhccceEEecccccchhhHHHHHHHHHHHHhcCCCEEEE
Confidence 456779999999999999999998655422211 111100000 0 0011122334456777888999999999
Q ss_pred cCCCCCCCCcccccCCCCCCCCCCCcccccceeeeecCCCCHHHH-HhcCCCCEEEEeChHHHHHHHhc-CCCCCCeEEe
Q 043412 75 HSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETDRVSPEHV-KRCNRMDFVWVPTDFHVSTFIRS-GVDPAKVVKI 152 (383)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ad~vi~~s~~~~~~~~~~-~~~~~~i~vi 152 (383)
|.........+...... .. +.....+... .......... .....++.++++|+...+.+.+. +.+++++.++
T Consensus 86 ~~~~~~~~~~l~~~~~~-~~---~~v~~~h~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~i 159 (360)
T cd04951 86 HMFHANIFARLLRLFLP-SP---PLICTAHSKN--EGGRLRMLAYRLTDFLSDLTTNVSKEALDYFIASKAFNANKSFVV 159 (360)
T ss_pred cccchHHHHHHHHhhCC-CC---cEEEEeeccC--chhHHHHHHHHHHhhccCceEEEcHHHHHHHHhccCCCcccEEEE
Confidence 96544322222211111 11 1111111111 0111111111 12355788899999999998885 4677899999
Q ss_pred cCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCC
Q 043412 153 VQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYH 232 (383)
Q Consensus 153 ~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~ 232 (383)
|||+|...+.+...... ..... ++..++.++++++|++.+.||++.+++++.++.++.|+++|+++|+|
T Consensus 160 ~ng~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g-- 228 (360)
T cd04951 160 YNGIDTDRFRKDPARRL--KIRNA-------LGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDG-- 228 (360)
T ss_pred ccccchhhcCcchHHHH--HHHHH-------cCcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCC--
Confidence 99999877654332110 00111 12346789999999999999999999999999888899999999988
Q ss_pred CCCchHHHHHHHHhhCCCC---------CccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCCC
Q 043412 233 SGRDFGNKIVNFVEDSDLE---------KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEEN 303 (383)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~~ 303 (383)
+..+.+++.++.+++. +++..+|+.||++++||..|++|++++|||++|+|||+++.++..|++.+ +
T Consensus 229 ---~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~-~ 304 (360)
T cd04951 229 ---PLRATLERLIKALGLSNRVKLLGLRDDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDAGGVREVVGD-S 304 (360)
T ss_pred ---CcHHHHHHHHHhcCCCCcEEEecccccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEecCCChhhEecC-C
Confidence 3456666666665543 56678899999999999999999999999999999999999999999987 7
Q ss_pred ceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 043412 304 GYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVS-NVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIKD 377 (383)
Q Consensus 304 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~ 377 (383)
|++++++ |+++++++|.++++ +++.+..++++ ++.+.++|||+.+++++.++|++
T Consensus 305 g~~~~~~------------------~~~~~~~~i~~ll~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~y~~ 360 (360)
T cd04951 305 GLIVPIS------------------DPEALANKIDEILKMSGEERDIIGAR-RERIVKKFSINSIVQQWLTLYTG 360 (360)
T ss_pred ceEeCCC------------------CHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHhhC
Confidence 7777766 99999999999995 56666666666 77788999999999999999963
No 26
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=100.00 E-value=3.3e-35 Score=271.52 Aligned_cols=210 Identities=21% Similarity=0.259 Sum_probs=184.7
Q ss_pred hcCCCCEEEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccc
Q 043412 121 RCNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWE 200 (383)
Q Consensus 121 ~~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~ 200 (383)
.++.+|.++++|+..++.+.+.+.++.++.+++||+|.+.+.+... ..+.+.++++|++.
T Consensus 139 ~~~~~d~ii~~s~~~~~~~~~~~~~~~~i~vi~~g~d~~~~~~~~~--------------------~~~~~~i~~~G~~~ 198 (367)
T cd05844 139 LARRAALFIAVSQFIRDRLLALGFPPEKVHVHPIGVDTAKFTPATP--------------------ARRPPRILFVGRFV 198 (367)
T ss_pred HHHhcCEEEECCHHHHHHHHHcCCCHHHeEEecCCCCHHhcCCCCC--------------------CCCCcEEEEEEeec
Confidence 3688999999999999999998888889999999999877765322 23467899999999
Q ss_pred cccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC-----------CccccccccCceEEecCC
Q 043412 201 YRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE-----------KPDDGWAPAADVFVLPSR 269 (383)
Q Consensus 201 ~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~-----------~~v~~~~~~adi~v~ps~ 269 (383)
+.||++.+++|+..+.++.++++|+++|++ +..++++.+++.+++. +++..+|+.||++++||.
T Consensus 199 ~~K~~~~li~a~~~l~~~~~~~~l~ivG~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~ 273 (367)
T cd05844 199 EKKGPLLLLEAFARLARRVPEVRLVIIGDG-----PLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSV 273 (367)
T ss_pred cccChHHHHHHHHHHHHhCCCeEEEEEeCc-----hHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcc
Confidence 999999999999999888899999999987 5567788888876654 345688899999999996
Q ss_pred ------CCCCChHHHHHHHcCCCEEEcCCCCccccccCC-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhc
Q 043412 270 ------GEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVS 342 (383)
Q Consensus 270 ------~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~ 342 (383)
.||+|++++|||+||+|||+++.++..|++.++ +|+++++. |+++++++|.++++
T Consensus 274 ~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e~i~~~~~g~~~~~~------------------d~~~l~~~i~~l~~ 335 (367)
T cd05844 274 TAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPEAVEDGETGLLVPEG------------------DVAALAAALGRLLA 335 (367)
T ss_pred cCCCCCccCCchHHHHHHHcCCCEEEeCCCCchhheecCCeeEEECCC------------------CHHHHHHHHHHHHc
Confidence 599999999999999999999999999999875 77777765 99999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043412 343 NVDEAKAKGKQAREDMIQRFSPETVAGIVTD 373 (383)
Q Consensus 343 ~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~ 373 (383)
|++.+.+|+.++++.+.++|||+.+++++.+
T Consensus 336 ~~~~~~~~~~~a~~~~~~~~s~~~~~~~l~~ 366 (367)
T cd05844 336 DPDLRARMGAAGRRRVEERFDLRRQTAKLEA 366 (367)
T ss_pred CHHHHHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 9999999999999998899999999999875
No 27
>PRK10125 putative glycosyl transferase; Provisional
Probab=100.00 E-value=5.3e-35 Score=270.55 Aligned_cols=324 Identities=16% Similarity=0.090 Sum_probs=214.1
Q ss_pred CCCCChhHHHHHHHHHHHhcccCCCceeeeecCCCcccchhhc----------------------CCChhhhhHHHHHHh
Q 043412 5 LSGGGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQSLQFWE----------------------GLPHHMRNLAVELYN 62 (383)
Q Consensus 5 ~~~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~l~~ 62 (383)
+..||.++.+.+|++.+.++|+...+.+.-...+ +...... -.+.........+.+
T Consensus 10 l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (405)
T PRK10125 10 LAEGGAAGVALDLHQRALQQGLASHFVYGYGKGG--KESVSHQNYPQVIKHTPRMTAMANIALFRLFNRDLFGNFNELYR 87 (405)
T ss_pred ecCCchhHHHHHHHHHHHhcCCeEEEEEecCCCc--ccccccCCcceEEEecccHHHHHHHHHHHhcchhhcchHHHHHH
Confidence 5679999999999999999998766433322211 1100000 011122234556666
Q ss_pred hh-cCCCccEEEecCCCCCCCCcc----------cccCCCCCCCCCCCcccccceee-------ee-----------cCC
Q 043412 63 TE-CRTNETVVICHSEPGAWYPPL----------FDTLPCPPTPGYGDFMAVIGRTM-------FE-----------TDR 113 (383)
Q Consensus 63 ~~-~~~~pDiV~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~-------~~-----------~~~ 113 (383)
++ ++++|||||+|...+.+.... +.....+.+.+.|+.....|... |. ...
T Consensus 88 ~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~Cp~l~~~~~ 167 (405)
T PRK10125 88 TITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCPTLNNYPP 167 (405)
T ss_pred HHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCCCCCccCCCC
Confidence 66 688999999998766433211 11111223322333222211110 00 000
Q ss_pred --CC---HH-------HHHhcCCCCEEEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCcccccc
Q 043412 114 --VS---PE-------HVKRCNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGL 181 (383)
Q Consensus 114 --~~---~~-------~~~~~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~ 181 (383)
.. +. +....+.++.++++|++.++.+.+.. ...++.+||||+|++.+.+........
T Consensus 168 ~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~~-~~~~i~vI~NGid~~~~~~~~~~~~~~---------- 236 (405)
T PRK10125 168 VKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLY-GPGRCRIINNGIDMATEAILAELPPVR---------- 236 (405)
T ss_pred CccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHHc-CCCCEEEeCCCcCcccccccccccccc----------
Confidence 00 01 11113567899999999999987732 246999999999975332221110000
Q ss_pred CCCCCCCCcEEEEEeecc--ccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC---Ccccc
Q 043412 182 SNMNTSSKEFVFLSVFKW--EYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE---KPDDG 256 (383)
Q Consensus 182 ~~~~~~~~~~~i~~~g~~--~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~---~~v~~ 256 (383)
.++++++++++|+. .+.||++.+++|+..+ .++++|+++|.+.... ...+..+|.. +++..
T Consensus 237 ----~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l---~~~~~L~ivG~g~~~~-------~~~v~~~g~~~~~~~l~~ 302 (405)
T PRK10125 237 ----ETQGKPKIAVVAHDLRYDGKTDQQLVREMMAL---GDKIELHTFGKFSPFT-------AGNVVNHGFETDKRKLMS 302 (405)
T ss_pred ----cCCCCCEEEEEEeccccCCccHHHHHHHHHhC---CCCeEEEEEcCCCccc-------ccceEEecCcCCHHHHHH
Confidence 02456778899983 4789999999999876 3579999999873211 1234455554 34678
Q ss_pred ccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHH
Q 043412 257 WAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRAL 336 (383)
Q Consensus 257 ~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~ 336 (383)
+|+.||++|+||.+|+||++++||||||+|||+|+.||.+|++++++|++++++ |+++|++.
T Consensus 303 ~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG~~Eiv~~~~G~lv~~~------------------d~~~La~~ 364 (405)
T PRK10125 303 ALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSDAAREVLQKSGGKTVSEE------------------EVLQLAQL 364 (405)
T ss_pred HHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCCChHHhEeCCcEEEECCC------------------CHHHHHhc
Confidence 899999999999999999999999999999999999999999988789888887 99999985
Q ss_pred HHHHhcCHHHHHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 043412 337 MRLVVSNVDEAKA----KGKQAREDMIQRFSPETVAGIVTDHIKDI 378 (383)
Q Consensus 337 i~~ll~~~~~~~~----~~~~a~~~~~~~~s~~~~~~~~~~~~~~~ 378 (383)
+ +++..++ +..++++++.++||++.++++|.++|+++
T Consensus 365 ~-----~~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 365 S-----KPEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred c-----CHHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 4 3443332 23567888888999999999999999863
No 28
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=8.2e-35 Score=271.81 Aligned_cols=338 Identities=19% Similarity=0.171 Sum_probs=232.7
Q ss_pred CCChhHHHHHHHHHHHhcccCCCceeeeecCCCcc--c-c-----hhhcCCCh----------hhhhHHHHHHhhhcCC-
Q 043412 7 GGGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQ--S-L-----QFWEGLPH----------HMRNLAVELYNTECRT- 67 (383)
Q Consensus 7 ~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~--~-~-----~~~~~~~~----------~~~~~~~~l~~~~~~~- 67 (383)
.||.++++.+++++|.+.|+.+.+.......+... . . ..+...+. ........+.+.+++.
T Consensus 20 ~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (398)
T cd03800 20 TGGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVPAGPAEYLPKEELWPYLDEFADDLLRFLRREG 99 (398)
T ss_pred CCceeehHHHHHHHHhccCceEEEEEecCCcccCCccccccceEEEecccccccCCChhhcchhHHHHHHHHHHHHHhcC
Confidence 58999999999999999998765422111111110 0 0 00000000 0012234455566666
Q ss_pred -CccEEEecCCCCCCCCcccccCC-CCCCCCCCCcccccceeeeec-----CCCCHHHHHhcCCCCEEEEeChHHHHHHH
Q 043412 68 -NETVVICHSEPGAWYPPLFDTLP-CPPTPGYGDFMAVIGRTMFET-----DRVSPEHVKRCNRMDFVWVPTDFHVSTFI 140 (383)
Q Consensus 68 -~pDiV~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ad~vi~~s~~~~~~~~ 140 (383)
+||+||+|.....+....+.... .+.+..++............. ..........++.+|.++++|+..++.+.
T Consensus 100 ~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~ 179 (398)
T cd03800 100 GRPDLIHAHYWDSGLVALLLARRLGIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLRAADRVIASTPQEAEELY 179 (398)
T ss_pred CCccEEEEecCccchHHHHHHhhcCCceEEEeecccccCCcccccccccchhhhhhHHHHHHhhCCEEEEcCHHHHHHHH
Confidence 99999999654433332222221 121111111110000000000 00011123347899999999999999888
Q ss_pred h-cCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccC
Q 043412 141 R-SGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKA 219 (383)
Q Consensus 141 ~-~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~ 219 (383)
+ ++.+..++.+||||+|.+.+.+....... +.... .+++.++|+++||+.+.||++.+++++..+.++.
T Consensus 180 ~~~~~~~~~~~vi~ng~~~~~~~~~~~~~~~---~~~~~-------~~~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~ 249 (398)
T cd03800 180 SLYGAYPRRIRVVPPGVDLERFTPYGRAEAR---RARLL-------RDPDKPRILAVGRLDPRKGIDTLIRAYAELPELR 249 (398)
T ss_pred HHccccccccEEECCCCCccceecccchhhH---HHhhc-------cCCCCcEEEEEcccccccCHHHHHHHHHHHHHhC
Confidence 8 44455579999999998877654332110 01111 2456789999999999999999999999998888
Q ss_pred CCeEEEEEeCCCCCCCc-hHHHHHHHHhhCCCC-----------CccccccccCceEEecCCCCCCChHHHHHHHcCCCE
Q 043412 220 DGVVLYLLTNPYHSGRD-FGNKIVNFVEDSDLE-----------KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPV 287 (383)
Q Consensus 220 ~~~~l~i~G~~~~~~~~-~~~~~~~~~~~~~~~-----------~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~Pv 287 (383)
++++|+++|++...... ....++.+++.+++. +++..+++.||++++||..|++|++++|||++|+||
T Consensus 250 ~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pv 329 (398)
T cd03800 250 ERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPALYEPFGLTALEAMACGLPV 329 (398)
T ss_pred CCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCE
Confidence 99999999988543222 234456666666554 345678899999999999999999999999999999
Q ss_pred EEcCCCCccccccCC-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHH
Q 043412 288 IATNWSGPTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPET 366 (383)
Q Consensus 288 I~~~~~g~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~ 366 (383)
|+++.++..+++.++ +|+++++. |+++++++|.++++|++.++.|++++++.+.++|||+.
T Consensus 330 i~s~~~~~~e~i~~~~~g~~~~~~------------------~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~ 391 (398)
T cd03800 330 VATAVGGPRDIVVDGVTGLLVDPR------------------DPEALAAALRRLLTDPALRRRLSRAGLRRARARYTWER 391 (398)
T ss_pred EECCCCCHHHHccCCCCeEEeCCC------------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 999999999999885 78877766 99999999999999999999999999999889999999
Q ss_pred HHHHHH
Q 043412 367 VAGIVT 372 (383)
Q Consensus 367 ~~~~~~ 372 (383)
+++++.
T Consensus 392 ~~~~~~ 397 (398)
T cd03800 392 VAARLL 397 (398)
T ss_pred HHHHHh
Confidence 999875
No 29
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=100.00 E-value=1.2e-34 Score=279.12 Aligned_cols=232 Identities=15% Similarity=0.180 Sum_probs=179.7
Q ss_pred hcCCCCEEEEeChHHHH----HHHhc----------------CC--CCCCeEEecCCCcCCCCCCCCCCCCcccc-----
Q 043412 121 RCNRMDFVWVPTDFHVS----TFIRS----------------GV--DPAKVVKIVQPVHVGFFDPVNCDPIDLAS----- 173 (383)
Q Consensus 121 ~~~~ad~vi~~s~~~~~----~~~~~----------------~~--~~~~i~vi~ngid~~~~~~~~~~~~~~~~----- 173 (383)
.++.||.||+.|..... ...+| |+ +..|+.+||+|+|.+.|.|..........
T Consensus 449 ~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~i 528 (784)
T TIGR02470 449 AMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEI 528 (784)
T ss_pred HHhcCCEEEECcHHHhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcch
Confidence 36889999999975533 22211 22 45699999999999988775542211100
Q ss_pred ----------CCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCC----CC---c
Q 043412 174 ----------IGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHS----GR---D 236 (383)
Q Consensus 174 ----------~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~----~~---~ 236 (383)
....++ ..++++++|+++||+.+.||++.+++|+.++....++++|+|+|++... +. .
T Consensus 529 e~ll~~~~~~~~~~G~-----l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~ 603 (784)
T TIGR02470 529 EELLFSLEDNDEHYGY-----LKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQA 603 (784)
T ss_pred hhhccchhhHHHHhCC-----CCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHH
Confidence 011111 1246788999999999999999999999887655568999999987421 11 1
Q ss_pred hHHHHHHHHhhCCCCCccc------------cccc----cCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCcccccc
Q 043412 237 FGNKIVNFVEDSDLEKPDD------------GWAP----AADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLT 300 (383)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~------------~~~~----~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~ 300 (383)
....+.++++.+++.+++. .+|+ .+|+|++||.+|+||++++|||+||+|||+|+.||..|++.
T Consensus 604 ~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG~~EiV~ 683 (784)
T TIGR02470 604 EIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGGPLEIIQ 683 (784)
T ss_pred HHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhc
Confidence 3456777888888765543 2332 45799999999999999999999999999999999999998
Q ss_pred CC-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043412 301 EE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVV----SNVDEAKAKGKQAREDMIQRFSPETVAGIVTDHI 375 (383)
Q Consensus 301 ~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll----~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~ 375 (383)
++ +|+++++. |+++++++|.+++ .|++.+++|+++|++++.++|||+.+++++.++.
T Consensus 684 dg~tGfLVdp~------------------D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~~ll~l~ 745 (784)
T TIGR02470 684 DGVSGFHIDPY------------------HGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKIYSERLLTLA 745 (784)
T ss_pred CCCcEEEeCCC------------------CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 86 88888776 9999999999876 6999999999999999999999999999998775
No 30
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=8.1e-35 Score=271.19 Aligned_cols=223 Identities=16% Similarity=0.123 Sum_probs=178.5
Q ss_pred hcCCCCEEEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeec-c
Q 043412 121 RCNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFK-W 199 (383)
Q Consensus 121 ~~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~-~ 199 (383)
.++.+|.+|++|++.++.+.+.. .+++.+||||+|.+.|.+......... .... +.++.++++++|| +
T Consensus 153 ~~~~ad~vi~~s~~~~~~~~~~~--~~ki~vI~ngvd~~~f~~~~~~~~~~~--~~~~-------~~~~~~~i~~vgR~l 221 (396)
T cd03818 153 ALAQADAGVSPTRWQRSTFPAEL--RSRISVIHDGIDTDRLRPDPQARLRLP--NGRV-------LTPGDEVITFVARNL 221 (396)
T ss_pred HHHhCCEEECCCHHHHhhCcHhh--ccceEEeCCCccccccCCCchhhhccc--cccc-------CCCCCeEEEEECCCc
Confidence 36899999999999999887632 258999999999998876543211111 1111 2356788999997 9
Q ss_pred ccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCC-------CCchHHHHHHHHhh---------CCCC--CccccccccC
Q 043412 200 EYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHS-------GRDFGNKIVNFVED---------SDLE--KPDDGWAPAA 261 (383)
Q Consensus 200 ~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~-------~~~~~~~~~~~~~~---------~~~~--~~v~~~~~~a 261 (383)
.+.||++.+++|+.++.++.|+++|+|+|++... ...+.+.+.+.... +|.. +++..+|+.|
T Consensus 222 ~~~Kg~~~ll~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~a 301 (396)
T cd03818 222 EPYRGFHVFMRALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVS 301 (396)
T ss_pred ccccCHHHHHHHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhC
Confidence 9999999999999999888999999999974210 01122222222211 1221 4567889999
Q ss_pred ceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCC-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHH
Q 043412 262 DVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLV 340 (383)
Q Consensus 262 di~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~l 340 (383)
|++++||..|++|++++||||||+|||+|+.++..|++.++ +|++++++ |+++++++|.++
T Consensus 302 dv~v~~s~~e~~~~~llEAmA~G~PVIas~~~g~~e~i~~~~~G~lv~~~------------------d~~~la~~i~~l 363 (396)
T cd03818 302 DVHVYLTYPFVLSWSLLEAMACGCLVVGSDTAPVREVITDGENGLLVDFF------------------DPDALAAAVIEL 363 (396)
T ss_pred cEEEEcCcccccchHHHHHHHCCCCEEEcCCCCchhhcccCCceEEcCCC------------------CHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999885 88888776 999999999999
Q ss_pred hcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043412 341 VSNVDEAKAKGKQAREDMIQRFSPETVAGIVT 372 (383)
Q Consensus 341 l~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~ 372 (383)
++|++.+.+|++++++.+.++|||+.++++|.
T Consensus 364 l~~~~~~~~l~~~ar~~~~~~fs~~~~~~~~~ 395 (396)
T cd03818 364 LDDPARRARLRRAARRTALRYDLLSVCLPRQL 395 (396)
T ss_pred HhCHHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 99999999999999999988999999999885
No 31
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=6e-35 Score=268.83 Aligned_cols=317 Identities=15% Similarity=0.096 Sum_probs=222.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcccCCCceeeeecCCC-cccch-------hh--cCCChhhhhHHHHHHhhhcCCCccE
Q 043412 2 APFLSGGGYSSESWSYILALNEHVKNPRFKLAIEHHGD-LQSLQ-------FW--EGLPHHMRNLAVELYNTECRTNETV 71 (383)
Q Consensus 2 ~p~~~~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~-~~~~~-------~~--~~~~~~~~~~~~~l~~~~~~~~pDi 71 (383)
+|.+..||.++++.+++++|.+.|+...+ .+...+. ..... .+ .............+.+++++.+||+
T Consensus 6 ~~~~~~GG~~~~~~~l~~~L~~~~~~v~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv 83 (358)
T cd03812 6 VGTMNRGGIETFIMNYYRNLDRSKIQFDF--LVTSKEEGDYDDEIEKLGGKIYYIPARKKNPLKYFKKLYKLIKKNKYDI 83 (358)
T ss_pred eCCCCCccHHHHHHHHHHhcCccceEEEE--EEeCCCCcchHHHHHHcCCeEEEecCCCccHHHHHHHHHHHHhcCCCCE
Confidence 56778999999999999999988775543 2222222 11000 00 0111122334456667778899999
Q ss_pred EEecCCCCCCCCcccccCCCCCCCCCCCcccccceeeeecCCCCH-----H-HHHhcCCCCEEEEeChHHHHHHHhcCCC
Q 043412 72 VICHSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETDRVSP-----E-HVKRCNRMDFVWVPTDFHVSTFIRSGVD 145 (383)
Q Consensus 72 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~ad~vi~~s~~~~~~~~~~~~~ 145 (383)
||+|+....+....+........ . ..+.+... +....... . ....++.+|.++++|+..++.+... ..
T Consensus 84 v~~~~~~~~~~~~~~~~~~~~~~-~---v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~-~~ 157 (358)
T cd03812 84 VHVHGSSASGFILLAAKKAGVKV-R---IAHSHNTS-DSHDKKKKILKYKVLRKLINRLATDYLACSEEAGKWLFGK-VK 157 (358)
T ss_pred EEEeCcchhHHHHHHHhhCCCCe-E---EEEecccc-ccccccchhhHHHHHHHHHHhcCCEEEEcCHHHHHHHHhC-CC
Confidence 99997653332222222211111 0 01111110 00011111 1 1223678999999999999988775 55
Q ss_pred CCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEE
Q 043412 146 PAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLY 225 (383)
Q Consensus 146 ~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~ 225 (383)
++++.+||||+|...+.+....... ..... ..++.++++++|++.+.||++.+++++..+.++.++++++
T Consensus 158 ~~~~~vi~ngvd~~~~~~~~~~~~~---~~~~~-------~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ 227 (358)
T cd03812 158 NKKFKVIPNGIDLEKFIFNEEIRKK---RRELG-------ILEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLL 227 (358)
T ss_pred cccEEEEeccCcHHHcCCCchhhhH---HHHcC-------CCCCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEE
Confidence 6799999999998877554322110 01111 2467899999999999999999999999999889999999
Q ss_pred EEeCCCCCCCchHHHHHHHHhhCCCC---------CccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCcc
Q 043412 226 LLTNPYHSGRDFGNKIVNFVEDSDLE---------KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPT 296 (383)
Q Consensus 226 i~G~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~ 296 (383)
++|+| +..+.+++.++..++. +++..+|+.||++++||..|++|++++|||++|+|||+|+.++..
T Consensus 228 ivG~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~~ 302 (358)
T cd03812 228 LVGDG-----ELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITKE 302 (358)
T ss_pred EEeCC-----chHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCchh
Confidence 99988 4456666666665543 567889999999999999999999999999999999999999999
Q ss_pred ccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 043412 297 EYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMI 359 (383)
Q Consensus 297 e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~ 359 (383)
+++.++.+++...+ ++++++++|.++++|++.++.+...+.....
T Consensus 303 ~~i~~~~~~~~~~~------------------~~~~~a~~i~~l~~~~~~~~~~~~~~~~~~~ 347 (358)
T cd03812 303 VDLTDLVKFLSLDE------------------SPEIWAEEILKLKSEDRRERSSESIKKKGLD 347 (358)
T ss_pred hhhccCccEEeCCC------------------CHHHHHHHHHHHHhCcchhhhhhhhhhccch
Confidence 99988766665544 7899999999999999999988887766433
No 32
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=100.00 E-value=3.7e-34 Score=263.93 Aligned_cols=340 Identities=19% Similarity=0.080 Sum_probs=226.3
Q ss_pred CCCCCC-CCChhHHHHHHHHHHHhcccCCCceeeeecCCCcccchh---hcCCChhhhhHHHHHHhhhcCCCccEEEecC
Q 043412 1 MAPFLS-GGGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQSLQF---WEGLPHHMRNLAVELYNTECRTNETVVICHS 76 (383)
Q Consensus 1 ~~p~~~-~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~pDiV~~~~ 76 (383)
++|+.. .||.++++.+++++|.++|+...+............... ..............+.+.+++.+||+||++.
T Consensus 5 v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii~~~~ 84 (366)
T cd03822 5 VSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGEQEVVRVIVLDNPLDYRRAARAIRLSGPDVVVIQH 84 (366)
T ss_pred ecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCcccceeeeecCCchhHHHHHHHHhhcCCCEEEEee
Confidence 356666 799999999999999999987654332221111111000 0111112233445667778889999999986
Q ss_pred CCCCCCCcccccCCC--CCCCCCCCcccccceeeeecCC-CCHHHHHhcCCCCEEEEeC-hHHHHHHHhcCCCCCCeEEe
Q 043412 77 EPGAWYPPLFDTLPC--PPTPGYGDFMAVIGRTMFETDR-VSPEHVKRCNRMDFVWVPT-DFHVSTFIRSGVDPAKVVKI 152 (383)
Q Consensus 77 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ad~vi~~s-~~~~~~~~~~~~~~~~i~vi 152 (383)
..+.+.+........ ... ..+.+...++........ ........++.+|.++++| +..++.+...+ ++++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~-~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~--~~~~~~i 161 (366)
T cd03822 85 EYGIFGGEAGLYLLLLLRGL-GIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMSSELLRALLLRAY--PEKIAVI 161 (366)
T ss_pred ccccccchhhHHHHHHHhhc-CCCEEEEEecCCccccchhhhHHHHHHHhcCCEEEEeeHHHHHHHHhhcC--CCcEEEe
Confidence 433221111111000 000 111122222221111111 1223334478999999996 43444433332 4699999
Q ss_pred cCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCC
Q 043412 153 VQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYH 232 (383)
Q Consensus 153 ~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~ 232 (383)
|||++...+.+.... .+.. ...+.++++++|++.+.||++.+++|+.++.++.++++|+++|++..
T Consensus 162 ~~~~~~~~~~~~~~~-------~~~~-------~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~ 227 (366)
T cd03822 162 PHGVPDPPAEPPESL-------KALG-------GLDGRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHP 227 (366)
T ss_pred CCCCcCcccCCchhh-------Hhhc-------CCCCCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCcc
Confidence 999987665443221 0000 13567899999999999999999999999998889999999998743
Q ss_pred CCCchHHHHHHHHhhCCCC------------CccccccccCceEEecCCCC--CCChHHHHHHHcCCCEEEcCCCCcccc
Q 043412 233 SGRDFGNKIVNFVEDSDLE------------KPDDGWAPAADVFVLPSRGE--GWGRPLVEAMSMGLPVIATNWSGPTEY 298 (383)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~adi~v~ps~~e--~~~~~~~Ea~a~G~PvI~~~~~g~~e~ 298 (383)
..........++++.+++. +++..+++.||++++||..| ++|++++|||+||+|||+++.++..++
T Consensus 228 ~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~~~~i 307 (366)
T cd03822 228 DLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGHAEEV 307 (366)
T ss_pred chhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCChhee
Confidence 2211111101224444432 45678889999999999999 999999999999999999999984444
Q ss_pred ccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043412 299 LTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIK 376 (383)
Q Consensus 299 v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~ 376 (383)
...++|++++.+ |+++++++|.++++|++.+.+|++++++.+.+ |||+.+++++.++|+
T Consensus 308 ~~~~~g~~~~~~------------------d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~ 366 (366)
T cd03822 308 LDGGTGLLVPPG------------------DPAALAEAIRRLLADPELAQALRARAREYARA-MSWERVAERYLRLLA 366 (366)
T ss_pred eeCCCcEEEcCC------------------CHHHHHHHHHHHHcChHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHhC
Confidence 444588877766 99999999999999999999999999998665 999999999999873
No 33
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=100.00 E-value=3.8e-34 Score=263.07 Aligned_cols=322 Identities=21% Similarity=0.224 Sum_probs=234.5
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcccCCCceeeeecCCCcccchhh-cCC-------ChhhhhHHHHHHhhhcCCCccEEE
Q 043412 2 APFLSGGGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQSLQFW-EGL-------PHHMRNLAVELYNTECRTNETVVI 73 (383)
Q Consensus 2 ~p~~~~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~l~~~~~~~~pDiV~ 73 (383)
+|-+ +.|.++.+++++++|.++|+...+................ ... ..........+.+.+++.+||+||
T Consensus 6 ~~~~-~~~~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~ 84 (355)
T cd03799 6 VKEF-PRLSETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELARTRYLARSLALLAQALVLARELRRLGIDHIH 84 (355)
T ss_pred CCCC-CCcchHHHHHHHHHHHhCCCeEEEEEecCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 4555 4458899999999999999876642221111111100000 000 011122334455566778999999
Q ss_pred ecCCCCCCCCcccccCCCCCCCCCCCcccccceeeeecCCCCHHHHHhcCCCCEEEEeChHHHHHHHhc-CCCCCCeEEe
Q 043412 74 CHSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETDRVSPEHVKRCNRMDFVWVPTDFHVSTFIRS-GVDPAKVVKI 152 (383)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~-~~~~~~i~vi 152 (383)
+|..........+..... ..+.....++...+.... .......++.+|.++++|+..++.+.+. +.+..++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vi~~s~~~~~~l~~~~~~~~~~~~vi 159 (355)
T cd03799 85 AHFGTTPATVAMLASRLG----GIPYSFTAHGKDIFRSPD-AIDLDEKLARADFVVAISEYNRQQLIRLLGCDPDKIHVV 159 (355)
T ss_pred ECCCCchHHHHHHHHHhc----CCCEEEEEecccccccCc-hHHHHHHHhhCCEEEECCHHHHHHHHHhcCCCcccEEEE
Confidence 997543222222221111 111122222222222111 1345556899999999999999999984 7777899999
Q ss_pred cCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCC
Q 043412 153 VQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYH 232 (383)
Q Consensus 153 ~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~ 232 (383)
|||+|.+.+.+.... ...+.+.++++|++.+.||++.+++++.++.++.++++++++|.+
T Consensus 160 ~~~~d~~~~~~~~~~------------------~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~-- 219 (355)
T cd03799 160 HCGVDLERFPPRPPP------------------PPGEPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDG-- 219 (355)
T ss_pred eCCcCHHHcCCcccc------------------ccCCCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECC--
Confidence 999998877654310 034578899999999999999999999999888889999999987
Q ss_pred CCCchHHHHHHHHhhCCCC-----------CccccccccCceEEecCCC------CCCChHHHHHHHcCCCEEEcCCCCc
Q 043412 233 SGRDFGNKIVNFVEDSDLE-----------KPDDGWAPAADVFVLPSRG------EGWGRPLVEAMSMGLPVIATNWSGP 295 (383)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~-----------~~v~~~~~~adi~v~ps~~------e~~~~~~~Ea~a~G~PvI~~~~~g~ 295 (383)
+....+.+.++..++. +++..+++.||++++||.. |++|++++|||++|+|||+++.++.
T Consensus 220 ---~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~ 296 (355)
T cd03799 220 ---PLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGI 296 (355)
T ss_pred ---ccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCc
Confidence 3456677776665543 4567888999999999998 9999999999999999999999999
Q ss_pred cccccCC-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 043412 296 TEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGI 370 (383)
Q Consensus 296 ~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~ 370 (383)
.+++.++ +|++++++ |+++++++|.++++|++.+.+|++++++.+.++|||+.++++
T Consensus 297 ~~~i~~~~~g~~~~~~------------------~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~ 354 (355)
T cd03799 297 PELVEDGETGLLVPPG------------------DPEALADAIERLLDDPELRREMGEAGRARVEEEFDIRKQAAR 354 (355)
T ss_pred chhhhCCCceEEeCCC------------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 9999986 88888766 999999999999999999999999999999999999999875
No 34
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=8.4e-35 Score=277.68 Aligned_cols=239 Identities=18% Similarity=0.181 Sum_probs=177.1
Q ss_pred HHhcCCCCEEEEeChHHHHHHHh----------cCCCCCCeEEecCCCcCCCCCCCCCCCCccc---------cCCcccc
Q 043412 119 VKRCNRMDFVWVPTDFHVSTFIR----------SGVDPAKVVKIVQPVHVGFFDPVNCDPIDLA---------SIGKPVL 179 (383)
Q Consensus 119 ~~~~~~ad~vi~~s~~~~~~~~~----------~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~---------~~~~~~l 179 (383)
...+..||.++++|+..++.+.+ ...+..++.+|+||+|.+.+.|......... ...+..+
T Consensus 205 ~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l 284 (476)
T cd03791 205 KAGIVYADAVTTVSPTYAREILTPEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAAL 284 (476)
T ss_pred HHHHHhcCcCeecCHhHHHHhCCCCCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHH
Confidence 33478899999999999988764 1234579999999999998887644321100 0000000
Q ss_pred ccCCCCC--CCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhC--------C
Q 043412 180 GLSNMNT--SSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDS--------D 249 (383)
Q Consensus 180 ~~~~~~~--~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~--------~ 249 (383)
. .++++ .++.++++++||+.++||++.+++++.++.++ +++|+++|+|. ..+.+.+++++... +
T Consensus 285 ~-~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g~---~~~~~~~~~~~~~~~~~v~~~~~ 358 (476)
T cd03791 285 Q-EELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPELLEL--GGQLVILGSGD---PEYEEALRELAARYPGRVAVLIG 358 (476)
T ss_pred H-HHcCCCcCCCCCEEEEEeeccccccHHHHHHHHHHHHHc--CcEEEEEecCC---HHHHHHHHHHHHhCCCcEEEEEe
Confidence 0 11223 36889999999999999999999999998765 49999999883 24556666666553 1
Q ss_pred CC-CccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCC
Q 043412 250 LE-KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEP 328 (383)
Q Consensus 250 ~~-~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~ 328 (383)
.. +.+..+|+.||++++||.+|+||++.+|||+||+|+|+++.+|..|++.++... .+.++|+++++.
T Consensus 359 ~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~-----------~~~~~G~~~~~~ 427 (476)
T cd03791 359 YDEALAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNED-----------TGEGTGFVFEGY 427 (476)
T ss_pred CCHHHHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCC-----------CCCCCeEEeCCC
Confidence 11 233578899999999999999999999999999999999999999999875200 011234444444
Q ss_pred CHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 043412 329 SVDKLRALMRLVVS---NVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIKD 377 (383)
Q Consensus 329 ~~~~la~~i~~ll~---~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~ 377 (383)
|+++++++|.++++ +++.+.+|++++.+ +.|||+.++++|.++|++
T Consensus 428 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~---~~fsw~~~a~~~~~~y~~ 476 (476)
T cd03791 428 NADALLAALRRALALYRDPEAWRKLQRNAMA---QDFSWDRSAKEYLELYRS 476 (476)
T ss_pred CHHHHHHHHHHHHHHHcCHHHHHHHHHHHhc---cCCChHHHHHHHHHHHhC
Confidence 99999999999875 67778888887754 579999999999999863
No 35
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=4.9e-34 Score=266.11 Aligned_cols=220 Identities=22% Similarity=0.256 Sum_probs=181.4
Q ss_pred cCCCCEEEEeChHHHHHHHh-cCCCC-CCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeecc
Q 043412 122 CNRMDFVWVPTDFHVSTFIR-SGVDP-AKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKW 199 (383)
Q Consensus 122 ~~~ad~vi~~s~~~~~~~~~-~~~~~-~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~ 199 (383)
++.+|.++++|+..++.+.+ ++... .++.+|+||+|.+.+.+...... ..... ..++.++++++|++
T Consensus 152 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~n~vd~~~~~~~~~~~~----~~~~~-------~~~~~~~i~~~grl 220 (392)
T cd03805 152 TGMADKIVVNSNFTASVFKKTFPSLAKNPREVVYPCVDTDSFESTSEDPD----PGLLI-------PKSGKKTFLSINRF 220 (392)
T ss_pred hhCceEEEEcChhHHHHHHHHhcccccCCcceeCCCcCHHHcCccccccc----ccccc-------cCCCceEEEEEeee
Confidence 68899999999999998877 44333 33459999999987766433210 01111 24678999999999
Q ss_pred ccccCHHHHHHHHHHHhccC---CCeEEEEEeCCCCCC---CchHHHHHHHHhh-CCCCCcc-----------ccccccC
Q 043412 200 EYRKGWDVLLKAYLEEFSKA---DGVVLYLLTNPYHSG---RDFGNKIVNFVED-SDLEKPD-----------DGWAPAA 261 (383)
Q Consensus 200 ~~~K~~~~ll~a~~~l~~~~---~~~~l~i~G~~~~~~---~~~~~~~~~~~~~-~~~~~~v-----------~~~~~~a 261 (383)
.+.||++.+++++.++.++. ++++|+++|+++... ..+.+++++++++ .++.+++ ..+++.|
T Consensus 221 ~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~a 300 (392)
T cd03805 221 ERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSSA 300 (392)
T ss_pred cccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhhC
Confidence 99999999999999998876 899999999885421 2345778888888 7776443 4678999
Q ss_pred ceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCC-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHH
Q 043412 262 DVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLV 340 (383)
Q Consensus 262 di~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~l 340 (383)
|++++||..|+||++++|||+||+|||+++.+|..|++.++ +|++++. |+++++++|.++
T Consensus 301 d~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~~~-------------------~~~~~a~~i~~l 361 (392)
T cd03805 301 RALLYTPSNEHFGIVPLEAMYAGKPVIACNSGGPLETVVDGETGFLCEP-------------------TPEEFAEAMLKL 361 (392)
T ss_pred eEEEECCCcCCCCchHHHHHHcCCCEEEECCCCcHHHhccCCceEEeCC-------------------CHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999885 7776653 899999999999
Q ss_pred hcCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 043412 341 VSNVDEAKAKGKQAREDMIQRFSPETVAGIV 371 (383)
Q Consensus 341 l~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~ 371 (383)
+++++.+.+|++++++.+.++|||+.+++++
T Consensus 362 ~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 362 ANDPDLADRMGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred HhChHHHHHHHHHHHHHHHHhcCHHHHhhhC
Confidence 9999999999999999999999999998764
No 36
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=100.00 E-value=3.1e-33 Score=263.71 Aligned_cols=218 Identities=15% Similarity=0.201 Sum_probs=178.1
Q ss_pred cCCCCEEEEeChHHHHHHHh-c---CCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEee
Q 043412 122 CNRMDFVWVPTDFHVSTFIR-S---GVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVF 197 (383)
Q Consensus 122 ~~~ad~vi~~s~~~~~~~~~-~---~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g 197 (383)
.+.+|.+|++|+..++.+.+ + +.+..++.+||||++...+.+.. ..+...++++|
T Consensus 268 ~~~~D~iI~~S~~~~~~l~~~~~~~~~~~~ki~viP~g~~~~~~~~~~---------------------~r~~~~il~vG 326 (500)
T TIGR02918 268 ADYIDFFITATDIQNQILKNQFKKYYNIEPRIYTIPVGSLDELQYPEQ---------------------ERKPFSIITAS 326 (500)
T ss_pred hhhCCEEEECCHHHHHHHHHHhhhhcCCCCcEEEEcCCCcccccCccc---------------------ccCCeEEEEEe
Confidence 57789999999998887765 2 33457899999998654433211 12356899999
Q ss_pred ccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC--------CccccccccCceEEecCC
Q 043412 198 KWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE--------KPDDGWAPAADVFVLPSR 269 (383)
Q Consensus 198 ~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~--------~~v~~~~~~adi~v~ps~ 269 (383)
|+.+.||++.+++|+..+.++.|+++|.++|+| +..+.++++++.+++. .++..+|+.||++++||.
T Consensus 327 rl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G-----~~~~~l~~~i~~~~l~~~V~f~G~~~~~~~~~~adv~v~pS~ 401 (500)
T TIGR02918 327 RLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEG-----GEKQKLQKIINENQAQDYIHLKGHRNLSEVYKDYELYLSAST 401 (500)
T ss_pred ccccccCHHHHHHHHHHHHhhCCCeEEEEEECc-----hhHHHHHHHHHHcCCCCeEEEcCCCCHHHHHHhCCEEEEcCc
Confidence 999999999999999999989999999999998 4467788888877664 345688899999999999
Q ss_pred CCCCChHHHHHHHcCCCEEEcCCC-CccccccCC-CceeeecccccccccCCCCcccccCCC-HHHHHHHHHHHhcCHHH
Q 043412 270 GEGWGRPLVEAMSMGLPVIATNWS-GPTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPS-VDKLRALMRLVVSNVDE 346 (383)
Q Consensus 270 ~e~~~~~~~Ea~a~G~PvI~~~~~-g~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~-~~~la~~i~~ll~~~~~ 346 (383)
.||||++++||||||+|||+++.+ |.+|++.++ +|+++++++- --++.+ +++++++|.++++ ++.
T Consensus 402 ~Egfgl~~lEAma~G~PVI~~dv~~G~~eiI~~g~nG~lv~~~~~-----------~~d~~~~~~~la~~I~~ll~-~~~ 469 (500)
T TIGR02918 402 SEGFGLTLMEAVGSGLGMIGFDVNYGNPTFIEDNKNGYLIPIDEE-----------EDDEDQIITALAEKIVEYFN-SND 469 (500)
T ss_pred cccccHHHHHHHHhCCCEEEecCCCCCHHHccCCCCEEEEeCCcc-----------ccchhHHHHHHHHHHHHHhC-hHH
Confidence 999999999999999999999986 899999886 9999974200 000012 8899999999995 567
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 043412 347 AKAKGKQAREDMIQRFSPETVAGIVTDHIKDI 378 (383)
Q Consensus 347 ~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~ 378 (383)
+.+|+++|++. +++|||+.++++|.++++++
T Consensus 470 ~~~~~~~a~~~-a~~fs~~~v~~~w~~ll~~~ 500 (500)
T TIGR02918 470 IDAFHEYSYQI-AEGFLTANIIEKWKKLVREV 500 (500)
T ss_pred HHHHHHHHHHH-HHhcCHHHHHHHHHHHHhhC
Confidence 89999999995 68899999999999998763
No 37
>PHA01630 putative group 1 glycosyl transferase
Probab=100.00 E-value=3.8e-33 Score=250.56 Aligned_cols=241 Identities=16% Similarity=0.228 Sum_probs=184.3
Q ss_pred CCCCHHHHHhc--CCCCEEEEeChHHHHHHHhcCCC-CCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCC
Q 043412 112 DRVSPEHVKRC--NRMDFVWVPTDFHVSTFIRSGVD-PAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSS 188 (383)
Q Consensus 112 ~~~~~~~~~~~--~~ad~vi~~s~~~~~~~~~~~~~-~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 188 (383)
.++...+...+ +++|.++++|+..++.+.+.+.+ ++++.+||||+|.+.|.+.... ..
T Consensus 80 ~~l~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~g~~~~~~i~vIpNGVd~~~f~~~~~~-------------------~~ 140 (331)
T PHA01630 80 DAISHTALYFFRNQPVDEIVVPSQWSKNAFYTSGLKIPQPIYVIPHNLNPRMFEYKPKE-------------------KP 140 (331)
T ss_pred chhhHHHHHHHhhccCCEEEECCHHHHHHHHHcCCCCCCCEEEECCCCCHHHcCCCccc-------------------cC
Confidence 34444555444 77999999999999999887765 5689999999999887654321 12
Q ss_pred CcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhC--CCCCccccccccCceEEe
Q 043412 189 KEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDS--DLEKPDDGWAPAADVFVL 266 (383)
Q Consensus 189 ~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~adi~v~ 266 (383)
+.+++++.|++.++||++.+++|++.+.++.++++++++|++.. ...+..+.... .-.+++..+|+.||++++
T Consensus 141 ~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~-----~~~l~~~~~~~~~v~~~~l~~~y~~aDv~v~ 215 (331)
T PHA01630 141 HPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNML-----DPRLFGLNGVKTPLPDDDIYSLFAGCDILFY 215 (331)
T ss_pred CCEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCccc-----chhhccccceeccCCHHHHHHHHHhCCEEEE
Confidence 35677888899999999999999999988889999999996532 11221111110 112677899999999999
Q ss_pred cCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCC-CceeeecccccccccCC--CCcccccCCCHHHHHHHHHHHhcC
Q 043412 267 PSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEE-NGYPLLVGRMSEVTEGP--FKGHFWAEPSVDKLRALMRLVVSN 343 (383)
Q Consensus 267 ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~-~g~~~~~~~~~~~~~~~--~~g~~~~~~~~~~la~~i~~ll~~ 343 (383)
||..|+||++++||||||+|||+|+.+|..|++.++ ||++++.+..+...... ..|.++++ |.+++++++.+++.|
T Consensus 216 pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~-~~~~~~~~ii~~l~~ 294 (331)
T PHA01630 216 PVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDP-DIEDAYQKLLEALAN 294 (331)
T ss_pred CCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccccccCC-CHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999886 99999875433333222 34666655 778888999998887
Q ss_pred H--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 043412 344 V--DEAKAKGKQAREDMIQRFSPETVAGIVTDHIKD 377 (383)
Q Consensus 344 ~--~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~ 377 (383)
+ +.+.++..++...+.++|||+++++++.++|++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 295 WTPEKKKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3 444444444455568999999999999999975
No 38
>PLN02949 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.7e-32 Score=254.90 Aligned_cols=221 Identities=18% Similarity=0.195 Sum_probs=179.9
Q ss_pred cCCCCEEEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeecccc
Q 043412 122 CNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEY 201 (383)
Q Consensus 122 ~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~ 201 (383)
.+.+|.|+++|+++++.+.+....++++.+++||+|.+.+....... +++...++++||+.+
T Consensus 218 ~~~ad~ii~nS~~t~~~l~~~~~~~~~i~vvyp~vd~~~~~~~~~~~------------------~~~~~~il~vGR~~~ 279 (463)
T PLN02949 218 GRCAHLAMVNSSWTKSHIEALWRIPERIKRVYPPCDTSGLQALPLER------------------SEDPPYIISVAQFRP 279 (463)
T ss_pred cCCCCEEEECCHHHHHHHHHHcCCCCCeEEEcCCCCHHHcccCCccc------------------cCCCCEEEEEEeeec
Confidence 38899999999999999988433345889999999876553211100 133567999999999
Q ss_pred ccCHHHHHHHHHHHhcc----CCCeEEEEEeCCCC-CCCchHHHHHHHHhhCCCCCc-----------cccccccCceEE
Q 043412 202 RKGWDVLLKAYLEEFSK----ADGVVLYLLTNPYH-SGRDFGNKIVNFVEDSDLEKP-----------DDGWAPAADVFV 265 (383)
Q Consensus 202 ~K~~~~ll~a~~~l~~~----~~~~~l~i~G~~~~-~~~~~~~~~~~~~~~~~~~~~-----------v~~~~~~adi~v 265 (383)
+||++.+++|+.++.++ .++++|+|+|++.. ++.++.++++++++++++.++ +..+|+.||+++
T Consensus 280 ~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v 359 (463)
T PLN02949 280 EKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGL 359 (463)
T ss_pred cCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEE
Confidence 99999999999887653 47899999999743 223456789999998887644 456789999999
Q ss_pred ecCCCCCCChHHHHHHHcCCCEEEcCCCCcc-ccccC---C-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHH
Q 043412 266 LPSRGEGWGRPLVEAMSMGLPVIATNWSGPT-EYLTE---E-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLV 340 (383)
Q Consensus 266 ~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~-e~v~~---~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~l 340 (383)
+||..|+||++++|||++|+|||+++.+|.. |++.+ + +|++++ |+++++++|.++
T Consensus 360 ~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~--------------------~~~~la~ai~~l 419 (463)
T PLN02949 360 HSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLAT--------------------TVEEYADAILEV 419 (463)
T ss_pred eCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCcccccCC--------------------CHHHHHHHHHHH
Confidence 9999999999999999999999999998864 67654 2 454443 899999999999
Q ss_pred hc-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 043412 341 VS-NVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIKDILSS 381 (383)
Q Consensus 341 l~-~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~~~~ 381 (383)
++ +++.+++|++++++.+ ++|||+.+++++.+.+++++++
T Consensus 420 l~~~~~~r~~m~~~ar~~~-~~FS~e~~~~~~~~~i~~l~~~ 460 (463)
T PLN02949 420 LRMRETERLEIAAAARKRA-NRFSEQRFNEDFKDAIRPILNS 460 (463)
T ss_pred HhCCHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHHHHHHHhh
Confidence 98 5788899999999986 6799999999999999998865
No 39
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=100.00 E-value=7.2e-33 Score=252.79 Aligned_cols=313 Identities=22% Similarity=0.181 Sum_probs=222.1
Q ss_pred CCChhHHHHHHHHHHHhcccCCCceeeeecCCCccc-ch--hhcCCC-------hhhhhHHHHHHhhhcCCCccEEEecC
Q 043412 7 GGGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQS-LQ--FWEGLP-------HHMRNLAVELYNTECRTNETVVICHS 76 (383)
Q Consensus 7 ~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~-~~--~~~~~~-------~~~~~~~~~l~~~~~~~~pDiV~~~~ 76 (383)
.||.++.+..++++|.+.|+...+............ .. .+..++ .........+.+++++.+||+||++.
T Consensus 12 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~i~~~~ 91 (348)
T cd03820 12 AGGAERVLSNLANALAEKGHEVTIISLDKGEPPFYELDPKIKVIDLGDKRDSKLLARFKKLRRLRKLLKNNKPDVVISFL 91 (348)
T ss_pred CCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCCccceeecccccccchhccccchHHHHHhhcccCCCEEEEcC
Confidence 899999999999999998876553222111100000 00 011111 11334456778888889999999997
Q ss_pred CCCCCCCcccccCCCCCCCCCCCcccccceeeeecCCCCHH--HHHhcCCCCEEEEeChHHHHHHHhcCCCCCCeEEecC
Q 043412 77 EPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETDRVSPE--HVKRCNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQ 154 (383)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~n 154 (383)
.........+....++.+ ...+............. ....++.+|.++++|+..+. .....++.++.++||
T Consensus 92 ~~~~~~~~~~~~~~~~~i------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~--~~~~~~~~~~~vi~~ 163 (348)
T cd03820 92 TSLLTFLASLGLKIVKLI------VSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDRA--LYYKKFNKNVVVIPN 163 (348)
T ss_pred chHHHHHHHHhhccccEE------EecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHHH--HhhccCCCCeEEecC
Confidence 541111111111111111 11111111100111111 34447899999999999982 223445679999999
Q ss_pred CCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCC
Q 043412 155 PVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSG 234 (383)
Q Consensus 155 gid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~ 234 (383)
|++...+.+. . ..+.+.++++|++.+.||++.++++++++.+..++++|+++|.+
T Consensus 164 ~~~~~~~~~~-~--------------------~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~---- 218 (348)
T cd03820 164 PLPFPPEEPS-S--------------------DLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDG---- 218 (348)
T ss_pred CcChhhcccc-C--------------------CCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCC----
Confidence 9988765443 0 24577899999999999999999999999888899999999987
Q ss_pred CchHHHHHHHHhhCCCC---------CccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCC-CccccccCC-C
Q 043412 235 RDFGNKIVNFVEDSDLE---------KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWS-GPTEYLTEE-N 303 (383)
Q Consensus 235 ~~~~~~~~~~~~~~~~~---------~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~-g~~e~v~~~-~ 303 (383)
+....+.+.+...++. +++..+|+.||++++||..|++|++++|||+||+|||+++.+ +..+++.++ +
T Consensus 219 -~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~~~~~~~~ 297 (348)
T cd03820 219 -PEREALEALIKELGLEDRVILLGFTKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSEIIEDGVN 297 (348)
T ss_pred -CCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCchHhhhccCcc
Confidence 3355566666665543 667889999999999999999999999999999999999975 556777766 8
Q ss_pred ceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043412 304 GYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVT 372 (383)
Q Consensus 304 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~ 372 (383)
|++++.. |+++++++|.++++|++.+++|++++++ +.++|+|++++++|.
T Consensus 298 g~~~~~~------------------~~~~~~~~i~~ll~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 347 (348)
T cd03820 298 GLLVPNG------------------DVEALAEALLRLMEDEELRKRMGANARE-SAERFSIENIIKQWE 347 (348)
T ss_pred eEEeCCC------------------CHHHHHHHHHHHHcCHHHHHHHHHHHHH-HHHHhCHHHHHHHhc
Confidence 8877766 9999999999999999999999999976 568899999999885
No 40
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=100.00 E-value=2.6e-33 Score=258.58 Aligned_cols=322 Identities=18% Similarity=0.144 Sum_probs=225.8
Q ss_pred CCCCCCChhHHHHHHHHHHHhcccCCCceeeeecCCCcccchhhcCCChhhhhHHHHHHhhhcCCCccEEEecCCCCCCC
Q 043412 3 PFLSGGGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQSLQFWEGLPHHMRNLAVELYNTECRTNETVVICHSEPGAWY 82 (383)
Q Consensus 3 p~~~~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDiV~~~~~~~~~~ 82 (383)
+....||.++++..++++|.+.|+...+.. .... .+.+.+++.+||+||+|.....+.
T Consensus 8 ~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~--~~~~--------------------~~~~~~~~~~~diih~~~~~~~~~ 65 (365)
T cd03825 8 TSDISGGAARAAYRLHRALQAAGVDSTMLV--QEKK--------------------ALISKIEIINADIVHLHWIHGGFL 65 (365)
T ss_pred cCCCCCcHHHHHHHHHHHHHhcCCceeEEE--eecc--------------------hhhhChhcccCCEEEEEccccCcc
Confidence 344569999999999999999998665422 1111 455567788999999987544332
Q ss_pred Ccc-cccC--CCCCCCCCCCcccccce----------------eeeecC----CCC-HHHH---Hhc-CCCCEEEEeChH
Q 043412 83 PPL-FDTL--PCPPTPGYGDFMAVIGR----------------TMFETD----RVS-PEHV---KRC-NRMDFVWVPTDF 134 (383)
Q Consensus 83 ~~~-~~~~--~~~~~~~~~~~~~~~~~----------------~~~~~~----~~~-~~~~---~~~-~~ad~vi~~s~~ 134 (383)
... +... .++.+..+++....... ...... ... ..+. ..+ ..++.++++|++
T Consensus 66 ~~~~~~~~~~~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~ 145 (365)
T cd03825 66 SIEDLSKLLDRKPVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAWADLNLTIVAPSRW 145 (365)
T ss_pred CHHHHHHHHcCCCEEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHhccCCcEEEehhHH
Confidence 211 1111 22222122211100000 000000 010 1111 112 567889999999
Q ss_pred HHHHHHhc-CCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeecccc--ccCHHHHHHH
Q 043412 135 HVSTFIRS-GVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEY--RKGWDVLLKA 211 (383)
Q Consensus 135 ~~~~~~~~-~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~--~K~~~~ll~a 211 (383)
.++.+.+. .++..++.++|||+|.+.+.+...... +...+ .+++..++++.|+... .||++.++++
T Consensus 146 ~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~----~~~~~-------~~~~~~~i~~~~~~~~~~~K~~~~ll~a 214 (365)
T cd03825 146 LADCARSSSLFKGIPIEVIPNGIDTTIFRPRDKREA----RKRLG-------LPADKKIILFGAVGGTDPRKGFDELIEA 214 (365)
T ss_pred HHHHHHhccccCCCceEEeCCCCcccccCCCcHHHH----HHHhC-------CCCCCeEEEEEecCCCccccCHHHHHHH
Confidence 99999884 467789999999999987755432211 11111 2455667777776654 8999999999
Q ss_pred HHHHhcc-CCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCCC---ccccccccCceEEecCCCCCCChHHHHHHHcCCCE
Q 043412 212 YLEEFSK-ADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLEK---PDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPV 287 (383)
Q Consensus 212 ~~~l~~~-~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~Pv 287 (383)
+..+.++ .++++++++|++.... ...+...+...|..+ ++..+++.||++++||..|++|++++|||+||+||
T Consensus 215 ~~~l~~~~~~~~~~~i~G~~~~~~---~~~~~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~Pv 291 (365)
T cd03825 215 LKRLAERWKDDIELVVFGASDPEI---PPDLPFPVHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIEALACGTPV 291 (365)
T ss_pred HHHhhhccCCCeEEEEeCCCchhh---hccCCCceEecCCcCCHHHHHHHHHhCCEEEeccccccccHHHHHHHhcCCCE
Confidence 9988765 6899999999874311 111122233334433 56788999999999999999999999999999999
Q ss_pred EEcCCCCccccccCC-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHH
Q 043412 288 IATNWSGPTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPET 366 (383)
Q Consensus 288 I~~~~~g~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~ 366 (383)
|+++.++..|++.++ +|++++.. |++++++++.++++|++.+.+|++++++.+.++|||+.
T Consensus 292 I~~~~~~~~e~~~~~~~g~~~~~~------------------~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~ 353 (365)
T cd03825 292 VAFDVGGIPDIVDHGVTGYLAKPG------------------DPEDLAEGIEWLLADPDEREELGEAARELAENEFDSRV 353 (365)
T ss_pred EEecCCCChhheeCCCceEEeCCC------------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999999886 78877766 99999999999999999999999999999888999999
Q ss_pred HHHHHHHHHHHH
Q 043412 367 VAGIVTDHIKDI 378 (383)
Q Consensus 367 ~~~~~~~~~~~~ 378 (383)
+++++.++|+++
T Consensus 354 ~~~~~~~~y~~~ 365 (365)
T cd03825 354 QAKRYLSLYEEL 365 (365)
T ss_pred HHHHHHHHHhhC
Confidence 999999999863
No 41
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=100.00 E-value=2.7e-33 Score=258.06 Aligned_cols=326 Identities=19% Similarity=0.117 Sum_probs=223.9
Q ss_pred CCChhHHHHHHHHHHHhcccCCCceeeeecCCCcccchh----------hcCCChhhhhHHHHHHhhhcCCCccEEEecC
Q 043412 7 GGGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQSLQF----------WEGLPHHMRNLAVELYNTECRTNETVVICHS 76 (383)
Q Consensus 7 ~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~pDiV~~~~ 76 (383)
.||.++++++++++|.+.|+...+.+.-........... ............+.......+.+||+||+++
T Consensus 14 ~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~ 93 (365)
T cd03809 14 PTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLLFLLRAGDRLLLLLLGLDLLHSPH 93 (365)
T ss_pred CCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhccccccccccccccchhhHHHHHHHHHhhhcCCCeeeecc
Confidence 599999999999999999887664332221111111000 0011112333344455556668999999997
Q ss_pred CCCCCCCcccccCCCCCCCCCCCcccccceeeee---cCCCCHHHHHhcCCCCEEEEeChHHHHHHHh-cCCCCCCeEEe
Q 043412 77 EPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFE---TDRVSPEHVKRCNRMDFVWVPTDFHVSTFIR-SGVDPAKVVKI 152 (383)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~-~~~~~~~i~vi 152 (383)
...... .....+.+..+++........... ...........++.+|.++++|+..++.+.+ ++.++.++.++
T Consensus 94 ~~~~~~----~~~~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~~~~~~~~~~vi 169 (365)
T cd03809 94 NTAPLL----RLRGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEATKRDLLRYLGVPPDKIVVI 169 (365)
T ss_pred cccCcc----cCCCCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEccHHHHHHHHHHhCcCHHHEEee
Confidence 544322 112222221111111100000000 0011122333378999999999999999988 56567799999
Q ss_pred cCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCC
Q 043412 153 VQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYH 232 (383)
Q Consensus 153 ~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~ 232 (383)
|||+|...+.+..... ..... ..++.++++++|++.+.||++.+++++..+..+.++++|+++|.+..
T Consensus 170 ~~~~~~~~~~~~~~~~-----~~~~~-------~~~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~ 237 (365)
T cd03809 170 PLGVDPRFRPPPAEAE-----VLRAL-------YLLPRPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGW 237 (365)
T ss_pred ccccCccccCCCchHH-----HHHHh-------cCCCCCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCcc
Confidence 9999987765543210 00000 13567899999999999999999999999998888899999998743
Q ss_pred CCCchHHHHHHHHhhCCCC-----------CccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccC
Q 043412 233 SGRDFGNKIVNFVEDSDLE-----------KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTE 301 (383)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~-----------~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~ 301 (383)
.... ....++..+.. +++..+++.||++++||..|++|++++|||++|+|||+++.++..|++.+
T Consensus 238 ~~~~----~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~ 313 (365)
T cd03809 238 LNEE----LLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISSLPEVAGD 313 (365)
T ss_pred ccHH----HHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCCccceecC
Confidence 2222 22221223322 45678899999999999999999999999999999999999999998853
Q ss_pred CCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043412 302 ENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVT 372 (383)
Q Consensus 302 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~ 372 (383)
+|++++++ |+++++++|.++++|++.+..|++++++ ..++|+|+++++++.
T Consensus 314 -~~~~~~~~------------------~~~~~~~~i~~l~~~~~~~~~~~~~~~~-~~~~~sw~~~~~~~~ 364 (365)
T cd03809 314 -AALYFDPL------------------DPEALAAAIERLLEDPALREELRERGLA-RAKRFSWEKTARRTL 364 (365)
T ss_pred -ceeeeCCC------------------CHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHhCCHHHHHHHHh
Confidence 56666655 9999999999999999999999999996 468899999999875
No 42
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=8.1e-33 Score=254.45 Aligned_cols=318 Identities=18% Similarity=0.141 Sum_probs=220.0
Q ss_pred CCCCC--CCChhHHHHHHHHHHHhcccCCCceeeeecCCCcccchhhcC-----------CC-hhhhhHHHHHHhhhcCC
Q 043412 2 APFLS--GGGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQSLQFWEG-----------LP-HHMRNLAVELYNTECRT 67 (383)
Q Consensus 2 ~p~~~--~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~l~~~~~~~ 67 (383)
+|++. .||.+..+++++++|.++|+...+.. .............. .. ...........+ ++..
T Consensus 6 ~~~~~p~~gG~~~~~~~l~~~L~~~g~~v~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (357)
T cd03795 6 GKFYPPDRGGIEQVIRDLAEGLAARGIEVAVLC--ASPEPKGRDEERNGHRVIRAPSLLNVASTPFSPSFFKQLK-KLAK 82 (357)
T ss_pred cCCCCCCCCcHHHHHHHHHHHHHhCCCceEEEe--cCCCCcchhhhccCceEEEeecccccccccccHHHHHHHH-hcCC
Confidence 45555 59999999999999999988765422 22211111100000 00 000011111111 5577
Q ss_pred CccEEEecCCCCCCCCccc-ccCCCCCCCCCCCcccccceeeeec----CCCCHHHHHhcCCCCEEEEeChHHHHHHHhc
Q 043412 68 NETVVICHSEPGAWYPPLF-DTLPCPPTPGYGDFMAVIGRTMFET----DRVSPEHVKRCNRMDFVWVPTDFHVSTFIRS 142 (383)
Q Consensus 68 ~pDiV~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~ 142 (383)
+||+||+|........... .....+.. ...++. .+.. ..........++.+|.++++|+..++.+...
T Consensus 83 ~~Dii~~~~~~~~~~~~~~~~~~~~~~i------~~~h~~-~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~ 155 (357)
T cd03795 83 KADVIHLHFPNPLADLALLLLPRKKPVV------VHWHSD-IVKQKLLLKLYRPLQRRFLRRADAIVATSPNYAETSPVL 155 (357)
T ss_pred CCCEEEEecCcchHHHHHHHhccCceEE------EEEcCh-hhccchhhhhhhHHHHHHHHhcCEEEeCcHHHHHHHHHh
Confidence 9999999975442211111 11111111 111111 1111 1112222334789999999999999988774
Q ss_pred CCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCe
Q 043412 143 GVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGV 222 (383)
Q Consensus 143 ~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~ 222 (383)
+..+.++.++|||+|...+.+...... .... ...+.++++++|++.+.||++.++++++++. ++
T Consensus 156 ~~~~~~~~~i~~gi~~~~~~~~~~~~~-----~~~~-------~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~----~~ 219 (357)
T cd03795 156 RRFRDKVRVIPLGLDPARYPRPDALEE-----AIWR-------RAAGRPFFLFVGRLVYYKGLDVLLEAAAALP----DA 219 (357)
T ss_pred cCCccceEEecCCCChhhcCCcchhhh-----Hhhc-------CCCCCcEEEEecccccccCHHHHHHHHHhcc----Cc
Confidence 433478999999999887765432110 0000 1356789999999999999999999999874 89
Q ss_pred EEEEEeCCCCCCCchHHHHHHHHhhCCCCC-----------ccccccccCceEEecCC--CCCCChHHHHHHHcCCCEEE
Q 043412 223 VLYLLTNPYHSGRDFGNKIVNFVEDSDLEK-----------PDDGWAPAADVFVLPSR--GEGWGRPLVEAMSMGLPVIA 289 (383)
Q Consensus 223 ~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~ 289 (383)
+++++|+| +....+.+.++..+..+ ++..+++.||++++||. .|++|++++|||++|+|||+
T Consensus 220 ~l~i~G~g-----~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~ 294 (357)
T cd03795 220 PLVIVGEG-----PLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVIS 294 (357)
T ss_pred EEEEEeCC-----hhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEe
Confidence 99999988 45667777776665542 35678899999999985 59999999999999999999
Q ss_pred cCCCCccccccC--CCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHH
Q 043412 290 TNWSGPTEYLTE--ENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETV 367 (383)
Q Consensus 290 ~~~~g~~e~v~~--~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~ 367 (383)
++.++..+.+.+ ++|++++++ |+++++++|.++++|++.+++|++++++.+.++|||+.+
T Consensus 295 ~~~~~~~~~i~~~~~~g~~~~~~------------------d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~ 356 (357)
T cd03795 295 TEIGTGGSYVNLHGVTGLVVPPG------------------DPAALAEAIRRLLEDPELRERLGEAARERAEEEFTADRM 356 (357)
T ss_pred cCCCCchhHHhhCCCceEEeCCC------------------CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHhcchHhh
Confidence 999999998874 488877766 999999999999999999999999999999999999986
Q ss_pred H
Q 043412 368 A 368 (383)
Q Consensus 368 ~ 368 (383)
+
T Consensus 357 ~ 357 (357)
T cd03795 357 V 357 (357)
T ss_pred C
Confidence 4
No 43
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=100.00 E-value=1.8e-32 Score=251.94 Aligned_cols=328 Identities=24% Similarity=0.238 Sum_probs=235.6
Q ss_pred CCChhHHHHHHHHHHHhcccCCCceeeeecCCCcccchhhcC-------------CChhhhhHHHHHHhhhcCCCccEEE
Q 043412 7 GGGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQSLQFWEG-------------LPHHMRNLAVELYNTECRTNETVVI 73 (383)
Q Consensus 7 ~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~~pDiV~ 73 (383)
.||...++.++++.|.+.|+...+.. .............. ...........+.+.+++.+||+||
T Consensus 13 ~~G~~~~~~~l~~~L~~~g~~v~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~ 90 (374)
T cd03801 13 VGGAERHVLELARALAARGHEVTVLT--PGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRLLRRERFDVVH 90 (374)
T ss_pred cCcHhHHHHHHHHHHHhcCceEEEEe--cCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHHhhhcCCcEEE
Confidence 58999999999999999887654322 21111111100000 0112233445566777888999999
Q ss_pred ecCCCCCCCCcccccCCCCCCCCCCCcccccceeeeec--------CCCCHHHHHhcCCCCEEEEeChHHHHHHHhc-CC
Q 043412 74 CHSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFET--------DRVSPEHVKRCNRMDFVWVPTDFHVSTFIRS-GV 144 (383)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~-~~ 144 (383)
+++.................. ....++...... ..........++.+|.++++|+..++.+.+. +.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~-----i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~~~~ 165 (374)
T cd03801 91 AHDWLALLAAALAARLLGIPL-----VLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATREELRELGGV 165 (374)
T ss_pred EechhHHHHHHHHHHhcCCcE-----EEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHHhcCCC
Confidence 997654332211111111111 222222211110 0011222233689999999999999999984 44
Q ss_pred CCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEE
Q 043412 145 DPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVL 224 (383)
Q Consensus 145 ~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l 224 (383)
++.++.++|||++...+.+... .. ..... ..++.+.++++|++.+.||++.+++++..+.++.++++|
T Consensus 166 ~~~~~~~i~~~~~~~~~~~~~~-~~----~~~~~-------~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l 233 (374)
T cd03801 166 PPEKITVIPNGVDTERFRPAPR-AA----RRRLG-------IPEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRL 233 (374)
T ss_pred CCCcEEEecCcccccccCccch-HH----HhhcC-------CcCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEE
Confidence 4469999999999887654310 00 00000 135678999999999999999999999999888899999
Q ss_pred EEEeCCCCCCCchHHHHHHHHhhCCCC-----------CccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCC
Q 043412 225 YLLTNPYHSGRDFGNKIVNFVEDSDLE-----------KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWS 293 (383)
Q Consensus 225 ~i~G~~~~~~~~~~~~~~~~~~~~~~~-----------~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~ 293 (383)
+++|++ .....+.+.++..+.. +++..+++.||++++|+..|++|++++|||++|+|||+++.+
T Consensus 234 ~i~G~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~ 308 (374)
T cd03801 234 VIVGDG-----PLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVG 308 (374)
T ss_pred EEEeCc-----HHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCCC
Confidence 999976 5566666666554433 567788999999999999999999999999999999999999
Q ss_pred CccccccC-CCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043412 294 GPTEYLTE-ENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVT 372 (383)
Q Consensus 294 g~~e~v~~-~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~ 372 (383)
+..+++.+ .+|++++.. |+++++++|.++++|++.+.+|++++++.+.+.|+|+.+++++.
T Consensus 309 ~~~~~~~~~~~g~~~~~~------------------~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (374)
T cd03801 309 GIPEVVEDGETGLLVPPG------------------DPEALAEAILRLLDDPELRRRLGEAARERVAERFSWDRVAARTE 370 (374)
T ss_pred ChhHHhcCCcceEEeCCC------------------CHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999986 477877765 89999999999999999999999999988899999999999999
Q ss_pred HHHH
Q 043412 373 DHIK 376 (383)
Q Consensus 373 ~~~~ 376 (383)
++|+
T Consensus 371 ~~~~ 374 (374)
T cd03801 371 EVYY 374 (374)
T ss_pred HhhC
Confidence 8873
No 44
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=100.00 E-value=4.4e-33 Score=255.31 Aligned_cols=325 Identities=24% Similarity=0.202 Sum_probs=227.5
Q ss_pred CCChhHHHHHHHHHHHhcccCCCceeeeecCCC-cccc-------hhhc--CCChhhhhHHHHHHhhhcCCCccEEEecC
Q 043412 7 GGGYSSESWSYILALNEHVKNPRFKLAIEHHGD-LQSL-------QFWE--GLPHHMRNLAVELYNTECRTNETVVICHS 76 (383)
Q Consensus 7 ~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~-~~~~-------~~~~--~~~~~~~~~~~~l~~~~~~~~pDiV~~~~ 76 (383)
.||.......++++|.+.|+...+......... .... +... ..+.........+.+.+++.+||+||+|.
T Consensus 9 ~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvv~~~~ 88 (359)
T cd03808 9 DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEALGVKVIPIPLDRRGINPFKDLKALLRLYRLLRKERPDIVHTHT 88 (359)
T ss_pred chhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccccCCceEEeccccccccChHhHHHHHHHHHHHHHhcCCCEEEEcc
Confidence 689999999999999998876553221111110 0000 0000 01122233455677788899999999996
Q ss_pred CCCCCCCccccc-CCCCCCCCCCCcccccceeeeecC-C-----CCHHHHHhcCCCCEEEEeChHHHHHHHhcCCC--CC
Q 043412 77 EPGAWYPPLFDT-LPCPPTPGYGDFMAVIGRTMFETD-R-----VSPEHVKRCNRMDFVWVPTDFHVSTFIRSGVD--PA 147 (383)
Q Consensus 77 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~ad~vi~~s~~~~~~~~~~~~~--~~ 147 (383)
..+.+...+... ...+.. ....++....... . ........++.+|.++++|+..++.+.+.+.. ..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~ 163 (359)
T cd03808 89 PKPGILGRLAARLAGVPKV-----IYTVHGLGFVFTSGGLKRRLYLLLERLALRFTDKVIFQNEDDRDLALKLGIIKKKK 163 (359)
T ss_pred ccchhHHHHHHHHcCCCCE-----EEEecCcchhhccchhHHHHHHHHHHHHHhhccEEEEcCHHHHHHHHHhcCCCcCc
Confidence 544332222222 111111 1111111110000 0 01111223678999999999999999986543 45
Q ss_pred CeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEE
Q 043412 148 KVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLL 227 (383)
Q Consensus 148 ~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~ 227 (383)
++.++++|+|.+.+.+.... ..++.++++++|++.+.||++.++++++.+.++.++++|+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~ 225 (359)
T cd03808 164 TVLIPGSGVDLDRFSPSPEP------------------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLV 225 (359)
T ss_pred eEEecCCCCChhhcCccccc------------------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEE
Confidence 77788999998776554321 024578999999999999999999999999888899999999
Q ss_pred eCCCCCCCchHHHHHH-----HHhhCCCCCccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCC
Q 043412 228 TNPYHSGRDFGNKIVN-----FVEDSDLEKPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEE 302 (383)
Q Consensus 228 G~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~ 302 (383)
|.+..........+.. .+...|..+++..+|+.||++++||..|++|++++|||+||+|||+++.++..+++.++
T Consensus 226 G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i~~~ 305 (359)
T cd03808 226 GDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPGCREAVIDG 305 (359)
T ss_pred cCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHHHhccEEEecCcccCcchHHHHHHHcCCCEEEecCCCchhhhhcC
Confidence 9985422111100111 12223435678899999999999999999999999999999999999999999999864
Q ss_pred -CceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043412 303 -NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVT 372 (383)
Q Consensus 303 -~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~ 372 (383)
+|++++.+ |+++++++|.+++.|++.+.++++++++.+.++|+|+.+++++.
T Consensus 306 ~~g~~~~~~------------------~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 358 (359)
T cd03808 306 VNGFLVPPG------------------DAEALADAIERLIEDPELRARMGQAARKRAEEEFDEEIVVKKLL 358 (359)
T ss_pred cceEEECCC------------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 78877766 99999999999999999999999999999899999999998875
No 45
>PLN00142 sucrose synthase
Probab=100.00 E-value=5.1e-33 Score=267.85 Aligned_cols=236 Identities=18% Similarity=0.184 Sum_probs=177.5
Q ss_pred cCCCCEEEEeChHHHHH-------HHhc-------------CC--CCCCeEEecCCCcCCCCCCCCCCCCcc----ccCC
Q 043412 122 CNRMDFVWVPTDFHVST-------FIRS-------------GV--DPAKVVKIVQPVHVGFFDPVNCDPIDL----ASIG 175 (383)
Q Consensus 122 ~~~ad~vi~~s~~~~~~-------~~~~-------------~~--~~~~i~vi~ngid~~~~~~~~~~~~~~----~~~~ 175 (383)
+..||.||+.|...... +..+ |+ ...++.+||+|+|...|.|........ ....
T Consensus 473 ~~~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I~ 552 (815)
T PLN00142 473 MNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQKRLTSLHPSIE 552 (815)
T ss_pred HHhhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCCChHHhhHHhhcccch
Confidence 67899999999777641 2221 22 245899999999999887654221100 0000
Q ss_pred ccccc----cCCCCC--CCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCC-CC---Cc---hHHHHH
Q 043412 176 KPVLG----LSNMNT--SSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYH-SG---RD---FGNKIV 242 (383)
Q Consensus 176 ~~~l~----~~~~~~--~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~-~~---~~---~~~~~~ 242 (383)
...+. ...++. ++++++|+++||+.+.||++.+++|+.++.+..++++|+|+|++.. .. .+ ....+.
T Consensus 553 ~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~ 632 (815)
T PLN00142 553 ELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMH 632 (815)
T ss_pred hhcCChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHH
Confidence 00000 000111 4567799999999999999999999998877778899999998721 11 11 124567
Q ss_pred HHHhhCCCCCcccc------------cc---c-cCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCC-Cce
Q 043412 243 NFVEDSDLEKPDDG------------WA---P-AADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEE-NGY 305 (383)
Q Consensus 243 ~~~~~~~~~~~v~~------------~~---~-~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~-~g~ 305 (383)
++++++++.+.+.. ++ + .+|+|++||.+|+||++++|||+||+|||+|+.||..|++.++ +|+
T Consensus 633 ~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG~~EIV~dG~tG~ 712 (815)
T PLN00142 633 SLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGGPAEIIVDGVSGF 712 (815)
T ss_pred HHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEE
Confidence 78888887655432 22 2 5799999999999999999999999999999999999999986 888
Q ss_pred eeecccccccccCCCCcccccCCCHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043412 306 PLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLV----VSNVDEAKAKGKQAREDMIQRFSPETVAGIVTDHI 375 (383)
Q Consensus 306 ~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~l----l~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~ 375 (383)
++++. |+++++++|.++ +.|++.+++|+++|++++.++|||+.+++++.++.
T Consensus 713 LV~P~------------------D~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e~FSWe~~A~rll~L~ 768 (815)
T PLN00142 713 HIDPY------------------HGDEAANKIADFFEKCKEDPSYWNKISDAGLQRIYECYTWKIYAERLLTLG 768 (815)
T ss_pred EeCCC------------------CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 88877 999999998765 47999999999999999999999999999998875
No 46
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=3.7e-32 Score=253.34 Aligned_cols=215 Identities=15% Similarity=0.175 Sum_probs=172.0
Q ss_pred cCCCCEEEEeChHHHHHHHhc-CCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccc
Q 043412 122 CNRMDFVWVPTDFHVSTFIRS-GVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWE 200 (383)
Q Consensus 122 ~~~ad~vi~~s~~~~~~~~~~-~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~ 200 (383)
++++|.++++|+..++.+.+. +..+.++.+||||+|.+.|.+...... . ..++..+++++|++.
T Consensus 170 ~~~ad~vi~~S~~~~~~l~~~~~~~~~~v~vipngvd~~~f~~~~~~~~------~---------~~~~~~~ilf~G~l~ 234 (397)
T TIGR03087 170 AARFDAATFVSRAEAELFRRLAPEAAGRITAFPNGVDADFFSPDRDYPN------P---------YPPGKRVLVFTGAMD 234 (397)
T ss_pred HhhCCeEEEcCHHHHHHHHHhCCCCCCCeEEeecccchhhcCCCccccC------C---------CCCCCcEEEEEEecC
Confidence 689999999999999999874 445678999999999988865432110 0 123467899999999
Q ss_pred cccCHHHHH----HHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhh-----CCCCCccccccccCceEEecCC-C
Q 043412 201 YRKGWDVLL----KAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVED-----SDLEKPDDGWAPAADVFVLPSR-G 270 (383)
Q Consensus 201 ~~K~~~~ll----~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~adi~v~ps~-~ 270 (383)
+.||++.++ +++..+.++.|+++|+|+|+++. ..++++... .|..+++..+|+.||++++||. .
T Consensus 235 ~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~~------~~~~~l~~~~~V~~~G~v~~~~~~~~~adv~v~Ps~~~ 308 (397)
T TIGR03087 235 YWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKPS------PAVRALAALPGVTVTGSVADVRPYLAHAAVAVAPLRIA 308 (397)
T ss_pred CccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCCh------HHHHHhccCCCeEEeeecCCHHHHHHhCCEEEeccccc
Confidence 999999988 45566667789999999998732 233333322 3444678899999999999997 5
Q ss_pred CCCChHHHHHHHcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHH
Q 043412 271 EGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAK 350 (383)
Q Consensus 271 e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~ 350 (383)
||+|++++|||+||+|||+|+.++.......++|++++ + |+++++++|.++++|++.+++|
T Consensus 309 eG~~~~~lEAma~G~PVV~t~~~~~~i~~~~~~g~lv~-~------------------~~~~la~ai~~ll~~~~~~~~~ 369 (397)
T TIGR03087 309 RGIQNKVLEAMAMAKPVVASPEAAEGIDALPGAELLVA-A------------------DPADFAAAILALLANPAEREEL 369 (397)
T ss_pred CCcccHHHHHHHcCCCEEecCcccccccccCCcceEeC-C------------------CHHHHHHHHHHHHcCHHHHHHH
Confidence 99999999999999999999975322222234676665 4 9999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043412 351 GKQAREDMIQRFSPETVAGIVTDHIK 376 (383)
Q Consensus 351 ~~~a~~~~~~~~s~~~~~~~~~~~~~ 376 (383)
++++++++.++|||+.+++++.++|.
T Consensus 370 ~~~ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 370 GQAARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 99999998899999999999998875
No 47
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=100.00 E-value=4.1e-32 Score=250.21 Aligned_cols=335 Identities=24% Similarity=0.240 Sum_probs=239.7
Q ss_pred CCCCC---CCChhHHHHHHHHHHHhcccCCCceeeeecCCCcccc-----------------hhhcCCChhhhhHHHHHH
Q 043412 2 APFLS---GGGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQSL-----------------QFWEGLPHHMRNLAVELY 61 (383)
Q Consensus 2 ~p~~~---~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~ 61 (383)
++.+. .||.+..+.++++.|.+.|+...+............. ................+.
T Consensus 5 ~~~~p~~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (377)
T cd03798 5 SSLYPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAARALL 84 (377)
T ss_pred ccCCCCCCCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHHHHHH
Confidence 44454 4999999999999999998875542221111111000 001111123344556677
Q ss_pred hhhc--CCCccEEEecCCCCCCCCc-ccccCCCCCCCCCCCcccccceeeeecCC---CCHHHHHhcCCCCEEEEeChHH
Q 043412 62 NTEC--RTNETVVICHSEPGAWYPP-LFDTLPCPPTPGYGDFMAVIGRTMFETDR---VSPEHVKRCNRMDFVWVPTDFH 135 (383)
Q Consensus 62 ~~~~--~~~pDiV~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ad~vi~~s~~~ 135 (383)
+.++ ..+||+||+|......... .+.... +.+.....++........ ........++++|.++++|+..
T Consensus 85 ~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~-----~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~ 159 (377)
T cd03798 85 KLLKLKRFRPDLIHAHFAYPDGFAAALLKRKL-----GIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSEAL 159 (377)
T ss_pred HHHhcccCCCCEEEEeccchHHHHHHHHHHhc-----CCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCHHH
Confidence 7787 8999999999533211111 111111 111122222222211111 1233344479999999999999
Q ss_pred HHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHH
Q 043412 136 VSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEE 215 (383)
Q Consensus 136 ~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l 215 (383)
++.+.+.+.+..++.++|||+|...+.+...... .+.. ...+.+.++++|++.+.||++.++++++.+
T Consensus 160 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~-------~~~~~~~i~~~g~~~~~k~~~~li~~~~~~ 227 (377)
T cd03798 160 ADELKALGIDPEKVTVIPNGVDTERFSPADRAEA-----RKLG-------LPEDKKVILFVGRLVPRKGIDYLIEALARL 227 (377)
T ss_pred HHHHHHhcCCCCceEEcCCCcCcccCCCcchHHH-----Hhcc-------CCCCceEEEEeccCccccCHHHHHHHHHHH
Confidence 9999986577789999999999887765433210 0000 135688999999999999999999999999
Q ss_pred hccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC-----------CccccccccCceEEecCCCCCCChHHHHHHHcC
Q 043412 216 FSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE-----------KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMG 284 (383)
Q Consensus 216 ~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~-----------~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G 284 (383)
.++.++++++++|.+ .....+.+.++..+.. +++..+++.||++++|+..|++|++++|||++|
T Consensus 228 ~~~~~~~~l~i~g~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G 302 (377)
T cd03798 228 LKKRPDVHLVIVGDG-----PLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACG 302 (377)
T ss_pred HhcCCCeEEEEEcCC-----cchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcC
Confidence 888889999999987 3345566666555443 345688899999999999999999999999999
Q ss_pred CCEEEcCCCCccccccCC-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 043412 285 LPVIATNWSGPTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFS 363 (383)
Q Consensus 285 ~PvI~~~~~g~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s 363 (383)
+|||+++.++..+++.++ +|+++++. |+++++++|.+++++++. ++..++++.+.+.|+
T Consensus 303 ~pvI~~~~~~~~~~~~~~~~g~~~~~~------------------~~~~l~~~i~~~~~~~~~--~~~~~~~~~~~~~~s 362 (377)
T cd03798 303 LPVVATDVGGIPEIITDGENGLLVPPG------------------DPEALAEAILRLLADPWL--RLGRAARRRVAERFS 362 (377)
T ss_pred CCEEEecCCChHHHhcCCcceeEECCC------------------CHHHHHHHHHHHhcCcHH--HHhHHHHHHHHHHhh
Confidence 999999999999999886 66777766 999999999999999887 778888888899999
Q ss_pred HHHHHHHHHHHHHHH
Q 043412 364 PETVAGIVTDHIKDI 378 (383)
Q Consensus 364 ~~~~~~~~~~~~~~~ 378 (383)
|+.+++++.++|+++
T Consensus 363 ~~~~~~~~~~~~~~l 377 (377)
T cd03798 363 WENVAERLLELYREV 377 (377)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999998763
No 48
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=2.7e-32 Score=251.74 Aligned_cols=217 Identities=22% Similarity=0.237 Sum_probs=178.7
Q ss_pred cCCCCEEEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeecccc
Q 043412 122 CNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEY 201 (383)
Q Consensus 122 ~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~ 201 (383)
++.++.+++.|+.......... +..++.++|||+|.+.+.+...... +.... .+++.++++++|++.+
T Consensus 147 ~~~~~~i~~~s~~~~~~~~~~~-~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~-------~~~~~~~i~~~G~~~~ 214 (375)
T cd03821 147 LQAAAAVHATSEQEAAEIRRLG-LKAPIAVIPNGVDIPPFAALPSRGR----RRKFP-------ILPDKRIILFLGRLHP 214 (375)
T ss_pred HhcCCEEEECCHHHHHHHHhhC-CcccEEEcCCCcChhccCcchhhhh----hhhcc-------CCCCCcEEEEEeCcch
Confidence 5789999999988777766643 4568999999999887765432110 01111 2467889999999999
Q ss_pred ccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC-----------CccccccccCceEEecCCC
Q 043412 202 RKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE-----------KPDDGWAPAADVFVLPSRG 270 (383)
Q Consensus 202 ~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~-----------~~v~~~~~~adi~v~ps~~ 270 (383)
.||++.+++++..+.++.++++|+++|.+.. .+...++..+...++. +++..+++.||++++||..
T Consensus 215 ~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~---~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~ 291 (375)
T cd03821 215 KKGLDLLIEAFAKLAERFPDWHLVIAGPDEG---GYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHS 291 (375)
T ss_pred hcCHHHHHHHHHHhhhhcCCeEEEEECCCCc---chHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEecccc
Confidence 9999999999999998889999999998633 3444555544555543 3566788999999999999
Q ss_pred CCCChHHHHHHHcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHH
Q 043412 271 EGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAK 350 (383)
Q Consensus 271 e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~ 350 (383)
|++|++++|||+||+|||+++.++..+++.+++|++++. +.++++++|.++++|++.++.|
T Consensus 292 e~~~~~~~Eama~G~PvI~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~i~~l~~~~~~~~~~ 352 (375)
T cd03821 292 ENFGIVVAEALACGTPVVTTDKVPWQELIEYGCGWVVDD-------------------DVDALAAALRRALELPQRLKAM 352 (375)
T ss_pred CCCCcHHHHHHhcCCCEEEcCCCCHHHHhhcCceEEeCC-------------------ChHHHHHHHHHHHhCHHHHHHH
Confidence 999999999999999999999999999998877777664 5699999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 043412 351 GKQAREDMIQRFSPETVAGIVT 372 (383)
Q Consensus 351 ~~~a~~~~~~~~s~~~~~~~~~ 372 (383)
++++++.+.++|||+.+++++.
T Consensus 353 ~~~~~~~~~~~~s~~~~~~~~~ 374 (375)
T cd03821 353 GENGRALVEERFSWTAIAQQLL 374 (375)
T ss_pred HHHHHHHHHHhcCHHHHHHHhh
Confidence 9999998899999999999875
No 49
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=100.00 E-value=4.7e-32 Score=247.25 Aligned_cols=298 Identities=16% Similarity=0.082 Sum_probs=207.4
Q ss_pred CCCChhHHHHHHHHHHHhcccCCCceeeeecCCC--cccchhh--------cCCChhhhhHHHHHHhhhcCCCccEEEec
Q 043412 6 SGGGYSSESWSYILALNEHVKNPRFKLAIEHHGD--LQSLQFW--------EGLPHHMRNLAVELYNTECRTNETVVICH 75 (383)
Q Consensus 6 ~~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~--~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~pDiV~~~ 75 (383)
..||.++++.+++++|.+.|+...+ .....+. ....... .............+.+++++.+||+||+|
T Consensus 17 ~~GG~~~~~~~l~~~L~~~g~~V~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~ 94 (335)
T cd03802 17 AYGGTERVVAALTEGLVARGHEVTL--FASGDSKTAAPLVPVVPEPLRLDAPGRDRAEAEALALAERALAAGDFDIVHNH 94 (335)
T ss_pred ccCcHHHHHHHHHHHHHhcCceEEE--EecCCCCcccceeeccCCCcccccchhhHhhHHHHHHHHHHHhcCCCCEEEec
Confidence 7899999999999999999886543 2221111 0000000 00111223445667778889999999999
Q ss_pred CCCCCCCCcccccCCCCCCCCCCCcccccceeeeecCCCCHHHHHhcCCCCEEEEeChHHHHHHHhcCCCCCCeEEecCC
Q 043412 76 SEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETDRVSPEHVKRCNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQP 155 (383)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ng 155 (383)
.....+. .......+. +...++..... .. .........+.++++|+..++.+... .++.+||||
T Consensus 95 ~~~~~~~--~~~~~~~~~------v~~~h~~~~~~---~~-~~~~~~~~~~~~~~~s~~~~~~~~~~----~~~~vi~ng 158 (335)
T cd03802 95 SLHLPLP--FARPLPVPV------VTTLHGPPDPE---LL-KLYYAARPDVPFVSISDAQRRPWPPL----PWVATVHNG 158 (335)
T ss_pred Ccccchh--hhcccCCCE------EEEecCCCCcc---cc-hHHHhhCcCCeEEEecHHHHhhcccc----cccEEecCC
Confidence 7655432 111111121 22222222111 11 13344677899999999998877554 589999999
Q ss_pred CcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCC
Q 043412 156 VHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGR 235 (383)
Q Consensus 156 id~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~ 235 (383)
+|.+.+.+.. .++..++++|++.+.||++.+++++++ .+++|+++|.+...
T Consensus 159 vd~~~~~~~~----------------------~~~~~i~~~Gr~~~~Kg~~~li~~~~~-----~~~~l~i~G~~~~~-- 209 (335)
T cd03802 159 IDLDDYPFRG----------------------PKGDYLLFLGRISPEKGPHLAIRAARR-----AGIPLKLAGPVSDP-- 209 (335)
T ss_pred cChhhCCCCC----------------------CCCCEEEEEEeeccccCHHHHHHHHHh-----cCCeEEEEeCCCCH--
Confidence 9998876521 235568999999999999999999854 47999999998421
Q ss_pred chHH-HHHHH------HhhCCCC--CccccccccCceEEecCC-CCCCChHHHHHHHcCCCEEEcCCCCccccccCC-Cc
Q 043412 236 DFGN-KIVNF------VEDSDLE--KPDDGWAPAADVFVLPSR-GEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEE-NG 304 (383)
Q Consensus 236 ~~~~-~~~~~------~~~~~~~--~~v~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~-~g 304 (383)
.... ..... +..+|.. +++..+++.+|++++||. .|+||++++|||+||+|||+++.+|..|++.++ +|
T Consensus 210 ~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~~~e~i~~~~~g 289 (335)
T cd03802 210 DYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGAVPEVVEDGVTG 289 (335)
T ss_pred HHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCCchhheeCCCcE
Confidence 1111 11111 1112322 345678999999999997 599999999999999999999999999999987 88
Q ss_pred eeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043412 305 YPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIK 376 (383)
Q Consensus 305 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~ 376 (383)
++++ ++++++++|.++.+.+. +++++.+.++|||+.++++|.++|+
T Consensus 290 ~l~~--------------------~~~~l~~~l~~l~~~~~------~~~~~~~~~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 290 FLVD--------------------SVEELAAAVARADRLDR------AACRRRAERRFSAARMVDDYLALYR 335 (335)
T ss_pred EEeC--------------------CHHHHHHHHHHHhccHH------HHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 8876 69999999999866432 4566677899999999999999884
No 50
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=100.00 E-value=3.6e-32 Score=248.49 Aligned_cols=321 Identities=21% Similarity=0.250 Sum_probs=228.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHhcccCCCceeeeecCCCcccch---------hhcCCChhhhhHHHHHHhhhcCCCccEE
Q 043412 2 APFLSGGGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQSLQ---------FWEGLPHHMRNLAVELYNTECRTNETVV 72 (383)
Q Consensus 2 ~p~~~~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~pDiV 72 (383)
++.+..||.++.+..++++|.+.|+...+.............. ...............+.+.+++.+||+|
T Consensus 6 ~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii 85 (353)
T cd03811 6 IPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKEKPDVV 85 (353)
T ss_pred eecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhcCCCEE
Confidence 4566689999999999999998887655322111111100000 0001122334455678888888999999
Q ss_pred EecCCCCCCCCcccccCCCCCCCCCCCcccccceeeeecCCCCH---HHHHhcCCCCEEEEeChHHHHHHHh-cCCCCCC
Q 043412 73 ICHSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETDRVSP---EHVKRCNRMDFVWVPTDFHVSTFIR-SGVDPAK 148 (383)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ad~vi~~s~~~~~~~~~-~~~~~~~ 148 (383)
|++.....+....+........ ....++........... .....++.+|.++++|+..++.+.+ ++.+..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~ 160 (353)
T cd03811 86 ISHLTTTPNVLALLAARLGTKL-----IVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPDK 160 (353)
T ss_pred EEcCccchhHHHHHHhhcCCce-----EEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhhHHHhhcCCccc
Confidence 9997611111111211111111 12222221111111111 2445579999999999999999988 4444679
Q ss_pred eEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEe
Q 043412 149 VVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLT 228 (383)
Q Consensus 149 i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G 228 (383)
+.++|||+|...+.+...... ... ..++.++++++|++.+.||++.++++++.+..+.++++|+++|
T Consensus 161 ~~vi~~~~~~~~~~~~~~~~~------~~~-------~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G 227 (353)
T cd03811 161 IEVIYNPIDIEEIRALAEEPL------ELG-------IPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILG 227 (353)
T ss_pred cEEecCCcChhhcCcccchhh------hcC-------CCCCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEc
Confidence 999999999877655433210 001 2467899999999999999999999999998888899999999
Q ss_pred CCCCCCCchHHHHHHHHhhCCCC---------CccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccc
Q 043412 229 NPYHSGRDFGNKIVNFVEDSDLE---------KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYL 299 (383)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v 299 (383)
.+ +..+.+.+.+..+++. +++..+++.||++++||..|++|++++|||++|+|||+++.++..|++
T Consensus 228 ~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~~~~e~i 302 (353)
T cd03811 228 DG-----PLREELEALAKELGLADRVHFLGFQSNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCPGPREIL 302 (353)
T ss_pred CC-----ccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCCChHHHh
Confidence 87 3456666666666554 456688999999999999999999999999999999999999999999
Q ss_pred cCC-CceeeecccccccccCCCCcccccCCCHHHH---HHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Q 043412 300 TEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKL---RALMRLVVSNVDEAKAKGKQAREDMIQRFS 363 (383)
Q Consensus 300 ~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s 363 (383)
.++ +|++++.+ +.+++ ++++..+.++++.+.++++++++.+.++|+
T Consensus 303 ~~~~~g~~~~~~------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (353)
T cd03811 303 EDGENGLLVPVG------------------DEAALAAAALALLDLLLDPELRERLAAAARERVAREYS 352 (353)
T ss_pred cCCCceEEECCC------------------CHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhc
Confidence 885 88888776 88888 788888888999999999988888888776
No 51
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=100.00 E-value=3.2e-32 Score=254.00 Aligned_cols=210 Identities=17% Similarity=0.196 Sum_probs=168.6
Q ss_pred cCCCCEEEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeecccc
Q 043412 122 CNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEY 201 (383)
Q Consensus 122 ~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~ 201 (383)
++.+|.++++|+++++.+.+.+...+++.+|+||+|.+.+.+..... .++..+++++||+.+
T Consensus 187 ~~~aD~ii~~S~~~~~~~~~~~~~~~~~~vi~~gvd~~~~~~~~~~~------------------~~~~~~il~vgr~~~ 248 (419)
T cd03806 187 GSFADVVMVNSTWTRNHIRSLWKRNTKPSIVYPPCDVEELLKLPLDE------------------KTRENQILSIAQFRP 248 (419)
T ss_pred hhcCCEEEECCHHHHHHHHHHhCcCCCcEEEcCCCCHHHhccccccc------------------ccCCcEEEEEEeecC
Confidence 68999999999999999988533335899999999987765432210 234678999999999
Q ss_pred ccCHHHHHHHHHHHhccCC-----CeEEEEEeCCCCC-CCchHHHHHHHHhhCCCCC-----------ccccccccCceE
Q 043412 202 RKGWDVLLKAYLEEFSKAD-----GVVLYLLTNPYHS-GRDFGNKIVNFVEDSDLEK-----------PDDGWAPAADVF 264 (383)
Q Consensus 202 ~K~~~~ll~a~~~l~~~~~-----~~~l~i~G~~~~~-~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~adi~ 264 (383)
.||++.+++|+..+.++.| +++|+|+|++... +.++.++++++++++++.+ ++..+|+.||++
T Consensus 249 ~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~ 328 (419)
T cd03806 249 EKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTASIG 328 (419)
T ss_pred CCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEE
Confidence 9999999999999987765 4999999987432 2346688888998888764 345788999999
Q ss_pred EecCCCCCCChHHHHHHHcCCCEEEcCCCCc-ccccc---C-CCceeeecccccccccCCCCcccccCCCHHHHHHHHHH
Q 043412 265 VLPSRGEGWGRPLVEAMSMGLPVIATNWSGP-TEYLT---E-ENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRL 339 (383)
Q Consensus 265 v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~-~e~v~---~-~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ 339 (383)
++|+..|+||++++|||+||+|||+++.+|. .|++. + .+|++++ |+++++++|.+
T Consensus 329 v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~--------------------d~~~la~ai~~ 388 (419)
T cd03806 329 LHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLAS--------------------TAEEYAEAIEK 388 (419)
T ss_pred EECCccCCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEEeC--------------------CHHHHHHHHHH
Confidence 9999999999999999999999999998764 57776 4 4777764 89999999999
Q ss_pred HhcCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 043412 340 VVSNVDEAKAKGKQAREDMIQRFSPETVAG 369 (383)
Q Consensus 340 ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~ 369 (383)
++++++....+..++++.+.++||++.+.+
T Consensus 389 ll~~~~~~~~~~~~~~~~~~~~fs~~~f~~ 418 (419)
T cd03806 389 ILSLSEEERLRIRRAARSSVKRFSDEEFER 418 (419)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhCHHHhcc
Confidence 999765443333555555789999998754
No 52
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=100.00 E-value=1.3e-33 Score=239.93 Aligned_cols=330 Identities=19% Similarity=0.186 Sum_probs=226.6
Q ss_pred CCCCC--CCCChhHHHHHHHHHHHhcccCCCceeeeecCCCcccchhhc------------C-----CChhhhhHHHHHH
Q 043412 1 MAPFL--SGGGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQSLQFWE------------G-----LPHHMRNLAVELY 61 (383)
Q Consensus 1 ~~p~~--~~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~------------~-----~~~~~~~~~~~l~ 61 (383)
++||| +.||+++|.+.+.+.|-+.||...+ ..-+.|+..-..... . +| .....+.-+.
T Consensus 6 Vsdff~P~~ggveshiy~lSq~li~lghkVvv--ithayg~r~girylt~glkVyylp~~v~~n~tT~p-tv~~~~Pllr 82 (426)
T KOG1111|consen 6 VSDFFYPSTGGVESHIYALSQCLIRLGHKVVV--ITHAYGNRVGIRYLTNGLKVYYLPAVVGYNQTTFP-TVFSDFPLLR 82 (426)
T ss_pred eCcccccCCCChhhhHHHhhcchhhcCCeEEE--EeccccCccceeeecCCceEEEEeeeeeecccchh-hhhccCcccc
Confidence 35666 5699999999999999999985321 111222221110000 0 11 0111122344
Q ss_pred hhhcCCCccEEEecCCCCCCCCcccccCCCCCCCCCCCcccccceeeeecCCC-----CHHHHHhcCCCCEEEEeChHHH
Q 043412 62 NTECRTNETVVICHSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETDRV-----SPEHVKRCNRMDFVWVPTDFHV 136 (383)
Q Consensus 62 ~~~~~~~pDiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ad~vi~~s~~~~ 136 (383)
.++.+++..+||.|+..+......+.. .+.. +.....+.+. ++..... .+.....+...|.+||+|...+
T Consensus 83 ~i~lrE~I~ivhghs~fS~lahe~l~h--artM-GlktVfTdHS--lfGfad~~si~~n~ll~~sL~~id~~IcVshtsk 157 (426)
T KOG1111|consen 83 PILLRERIEIVHGHSPFSYLAHEALMH--ARTM-GLKTVFTDHS--LFGFADIGSILTNKLLPLSLANIDRIICVSHTSK 157 (426)
T ss_pred hhhhhhceEEEecCChHHHHHHHHHHH--HHhc-CceEEEeccc--cccccchhhhhhcceeeeeecCCCcEEEEeecCC
Confidence 556677999999998655322111110 0111 1111222222 1111111 1112222688999999999988
Q ss_pred HHHHh-cCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHH
Q 043412 137 STFIR-SGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEE 215 (383)
Q Consensus 137 ~~~~~-~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l 215 (383)
+...- -..+++++.+|||.++...|.|...... +.+...++.++|+-.+||+|.++++++++
T Consensus 158 entvlr~~L~p~kvsvIPnAv~~~~f~P~~~~~~-----------------S~~i~~ivv~sRLvyrKGiDll~~iIp~v 220 (426)
T KOG1111|consen 158 ENTVLRGALAPAKVSVIPNAVVTHTFTPDAADKP-----------------SADIITIVVASRLVYRKGIDLLLEIIPSV 220 (426)
T ss_pred CceEEEeccCHhHeeeccceeeccccccCccccC-----------------CCCeeEEEEEeeeeeccchHHHHHHHHHH
Confidence 85443 4567889999999999999998655421 23458899999999999999999999999
Q ss_pred hccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC-----------CccccccccCceEEecCCCCCCChHHHHHHHcC
Q 043412 216 FSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE-----------KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMG 284 (383)
Q Consensus 216 ~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~-----------~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G 284 (383)
.+++|+++|+|+|+| +-+..+++..+++.++ +++...+...|+|++||..|+||++++||++||
T Consensus 221 c~~~p~vrfii~GDG-----Pk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaScG 295 (426)
T KOG1111|consen 221 CDKHPEVRFIIIGDG-----PKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCG 295 (426)
T ss_pred HhcCCCeeEEEecCC-----cccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHHHHHHHhCC
Confidence 999999999999999 4456666666666665 556788899999999999999999999999999
Q ss_pred CCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCH
Q 043412 285 LPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSP 364 (383)
Q Consensus 285 ~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~ 364 (383)
+|||++.+||.+|++.++.-.+ .+.+++++++++.+++..-... -....+.+.+-|+|
T Consensus 296 L~VVsTrVGGIpeVLP~d~i~~-------------------~~~~~~dl~~~v~~ai~~~~~~---p~~~h~~v~~~y~w 353 (426)
T KOG1111|consen 296 LPVVSTRVGGIPEVLPEDMITL-------------------GEPGPDDLVGAVEKAITKLRTL---PLEFHDRVKKMYSW 353 (426)
T ss_pred CEEEEeecCCccccCCccceec-------------------cCCChHHHHHHHHHHHHHhccC---chhHHHHHHHhccH
Confidence 9999999999999998762222 2237888888888877632211 22334456788999
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 043412 365 ETVAGIVTDHIKDILSSK 382 (383)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~ 382 (383)
+.++++-++.|.++...+
T Consensus 354 ~dVa~rTekvy~r~~~t~ 371 (426)
T KOG1111|consen 354 KDVAERTEKVYDRAATTS 371 (426)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 999999999999987654
No 53
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=8.2e-32 Score=248.40 Aligned_cols=210 Identities=21% Similarity=0.195 Sum_probs=165.5
Q ss_pred cCCCCEEEEeChHHHHHHHh-cCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccc
Q 043412 122 CNRMDFVWVPTDFHVSTFIR-SGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWE 200 (383)
Q Consensus 122 ~~~ad~vi~~s~~~~~~~~~-~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~ 200 (383)
++.+|.++++|+..++.+.+ ++.+ . .+||||+|...+.+.... .....+ .+ ...++++|++.
T Consensus 141 ~~~ad~ii~~s~~~~~~~~~~~~~~--~-~~i~ngv~~~~~~~~~~~------~~~~~~-------~~-~~~i~~~G~~~ 203 (363)
T cd04955 141 VKFADRLIADSPGIKEYLKEKYGRD--S-TYIPYGADHVVSSEEDEI------LKKYGL-------EP-GRYYLLVGRIV 203 (363)
T ss_pred HhhccEEEeCCHHHHHHHHHhcCCC--C-eeeCCCcChhhcchhhhh------HHhcCC-------CC-CcEEEEEeccc
Confidence 68899999999999999955 6654 3 899999998765541110 111111 22 34578999999
Q ss_pred cccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC-----------CccccccccCceEEecCC
Q 043412 201 YRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE-----------KPDDGWAPAADVFVLPSR 269 (383)
Q Consensus 201 ~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~-----------~~v~~~~~~adi~v~ps~ 269 (383)
+.||++.+++|++++.. +++|+++|+++.. ..+.+.+.+ ..+.. +++..++..||++++||.
T Consensus 204 ~~Kg~~~li~a~~~l~~---~~~l~ivG~~~~~-~~~~~~~~~---~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~ 276 (363)
T cd04955 204 PENNIDDLIEAFSKSNS---GKKLVIVGNADHN-TPYGKLLKE---KAAADPRIIFVGPIYDQELLELLRYAALFYLHGH 276 (363)
T ss_pred ccCCHHHHHHHHHhhcc---CceEEEEcCCCCc-chHHHHHHH---HhCCCCcEEEccccChHHHHHHHHhCCEEEeCCc
Confidence 99999999999988743 7999999987431 223333332 22222 345678899999999999
Q ss_pred C-CCCChHHHHHHHcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHH
Q 043412 270 G-EGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAK 348 (383)
Q Consensus 270 ~-e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~ 348 (383)
. |++|++++|||+||+|||+|+.++..|++++ +|+++++. +. ++++|.++++|++.+.
T Consensus 277 ~~e~~~~~~~EAma~G~PvI~s~~~~~~e~~~~-~g~~~~~~------------------~~--l~~~i~~l~~~~~~~~ 335 (363)
T cd04955 277 SVGGTNPSLLEAMAYGCPVLASDNPFNREVLGD-KAIYFKVG------------------DD--LASLLEELEADPEEVS 335 (363)
T ss_pred cCCCCChHHHHHHHcCCCEEEecCCccceeecC-CeeEecCc------------------hH--HHHHHHHHHhCHHHHH
Confidence 8 9999999999999999999999999999876 67666643 44 9999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043412 349 AKGKQAREDMIQRFSPETVAGIVTDHIK 376 (383)
Q Consensus 349 ~~~~~a~~~~~~~~s~~~~~~~~~~~~~ 376 (383)
++++++++.+.++|||+.+++++.++|+
T Consensus 336 ~~~~~~~~~~~~~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 336 AMAKAARERIREKYTWEKIADQYEELYK 363 (363)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 9999999998889999999999999884
No 54
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=2.4e-32 Score=251.59 Aligned_cols=328 Identities=19% Similarity=0.133 Sum_probs=225.5
Q ss_pred CChhHHHHHHHHHHHhcccCCCceeeeecCCCcc-c-----------chhhcCCChhhhhHHHHHHhhhcCCCccEEEec
Q 043412 8 GGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQ-S-----------LQFWEGLPHHMRNLAVELYNTECRTNETVVICH 75 (383)
Q Consensus 8 ~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~pDiV~~~ 75 (383)
||.+..+..++++|.++|+...+ .+....... . ....... .........+.+.+++.+||+||++
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pdii~~~ 90 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLV--IAPGPFRESEGPARVVPVPSVPLPGYPEI-RLALPPRRRVRRLLDAFAPDVVHIA 90 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEE--EeCCchhhccCCCCceeecccccCcccce-EecccchhhHHHHHHhcCCCEEEEe
Confidence 89999999999999999986543 222111100 0 0000000 1112234556677788899999998
Q ss_pred CCCCCCC-Cccccc-CCCCCCCCCCCcccccceee---eecCCCCHHHHHhcCCCCEEEEeChHHHHHHHhcCCCCCCeE
Q 043412 76 SEPGAWY-PPLFDT-LPCPPTPGYGDFMAVIGRTM---FETDRVSPEHVKRCNRMDFVWVPTDFHVSTFIRSGVDPAKVV 150 (383)
Q Consensus 76 ~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~~~~~~~i~ 150 (383)
+...... ...+.. ..++.+..++.......... +............++.+|.++++|+..++.+.+.+. .++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~~~~--~~~~ 168 (364)
T cd03814 91 TPGPLGLAALRAARRLGIPVVTSYHTDFPEYLRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLADELRARGF--RRVR 168 (364)
T ss_pred ccchhhHHHHHHHHHcCCCEEEEEecChHHHhhhcccchHhHhhHHHHHHHHHhCCEEEeCCHHHHHHHhccCC--Ccee
Confidence 6433211 111111 11222211111110000000 000000122333468899999999999997766554 4899
Q ss_pred EecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCC
Q 043412 151 KIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNP 230 (383)
Q Consensus 151 vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~ 230 (383)
+++||+|.+.+.+........ .+.. .++.++++++|++.+.||++.++++++++.++ ++++|+++|++
T Consensus 169 ~~~~g~~~~~~~~~~~~~~~~---~~~~--------~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~-~~~~l~i~G~~ 236 (364)
T cd03814 169 LWPRGVDTELFHPRRRDEALR---ARLG--------PPDRPVLLYVGRLAPEKNLEALLDADLPLRRR-PPVRLVIVGDG 236 (364)
T ss_pred ecCCCccccccCcccccHHHH---HHhC--------CCCCeEEEEEeccccccCHHHHHHHHHHhhhc-CCceEEEEeCC
Confidence 999999988776544321110 0000 24578899999999999999999999999887 89999999987
Q ss_pred CCCCCchHHHHH---HHHhhCCC--CCccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccC-CCc
Q 043412 231 YHSGRDFGNKIV---NFVEDSDL--EKPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTE-ENG 304 (383)
Q Consensus 231 ~~~~~~~~~~~~---~~~~~~~~--~~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~-~~g 304 (383)
+. ...++ ..+...|. .+++..+++.||++++||..|++|++++|||+||+|||+++.++..+++.+ ++|
T Consensus 237 ~~-----~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~~~~~i~~~~~g 311 (364)
T cd03814 237 PA-----RARLEARYPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGGPADIVTDGENG 311 (364)
T ss_pred ch-----HHHHhccCCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCCchhhhcCCcce
Confidence 32 23332 11222332 356788999999999999999999999999999999999999999999988 477
Q ss_pred eeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043412 305 YPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIK 376 (383)
Q Consensus 305 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~ 376 (383)
+++++. |.++++++|.++++|++.+++|++++++.+ ++|+|+.+++++.++|+
T Consensus 312 ~~~~~~------------------~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 364 (364)
T cd03814 312 LLVEPG------------------DAEAFAAALAALLADPELRRRMAARARAEA-ERRSWEAFLDNLLEAYR 364 (364)
T ss_pred EEcCCC------------------CHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHhhC
Confidence 777766 999999999999999999999999999976 88999999999998873
No 55
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=4.6e-32 Score=249.58 Aligned_cols=267 Identities=13% Similarity=0.068 Sum_probs=185.2
Q ss_pred HHHHHhhhcCCCccEEEecCCCC-CCC--CcccccCCCCCCCCCCCcc-cccceee--eecCCC---CHHHHHhcCCCCE
Q 043412 57 AVELYNTECRTNETVVICHSEPG-AWY--PPLFDTLPCPPTPGYGDFM-AVIGRTM--FETDRV---SPEHVKRCNRMDF 127 (383)
Q Consensus 57 ~~~l~~~~~~~~pDiV~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~---~~~~~~~~~~ad~ 127 (383)
..++.+.+++++|||||+|++.. +|. ...+.......+.+||... .+..++. +....+ ...|... ..+|.
T Consensus 105 ~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~k~~~vV~tyHT~y~~Y~~~~~~g~~~~~l~~~~~~~~~r-~~~d~ 183 (462)
T PLN02846 105 VGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKTKFRLVIGIVHTNYLEYVKREKNGRVKAFLLKYINSWVVD-IYCHK 183 (462)
T ss_pred hHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHhcCCcEEEEECCChHHHHHHhccchHHHHHHHHHHHHHHH-HhcCE
Confidence 35688888999999999998754 342 1122222222221233211 1111100 000000 0111111 34899
Q ss_pred EEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCC--cEEEEEeeccccccCH
Q 043412 128 VWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSK--EFVFLSVFKWEYRKGW 205 (383)
Q Consensus 128 vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~i~~~g~~~~~K~~ 205 (383)
++++|+...+ +.+ .+.+..+|||.+.|.+...... .... .++ .++++|+||+.+.||+
T Consensus 184 vi~pS~~~~~-l~~------~~i~~v~GVd~~~f~~~~~~~~-----~~~~--------~~~~~~~~~l~vGRL~~eK~~ 243 (462)
T PLN02846 184 VIRLSAATQD-YPR------SIICNVHGVNPKFLEIGKLKLE-----QQKN--------GEQAFTKGAYYIGKMVWSKGY 243 (462)
T ss_pred EEccCHHHHH-Hhh------CEEecCceechhhcCCCcccHh-----hhcC--------CCCCcceEEEEEecCcccCCH
Confidence 9999986655 432 2344458999998876543210 0000 122 3578999999999999
Q ss_pred HHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC-------CccccccccCceEEecCCCCCCChHHH
Q 043412 206 DVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE-------KPDDGWAPAADVFVLPSRGEGWGRPLV 278 (383)
Q Consensus 206 ~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~adi~v~ps~~e~~~~~~~ 278 (383)
+.+++|+.++.+..++++|+|+|+| +..+++++.++++++. .+...+++.+|+||+||.+|++|++++
T Consensus 244 ~~Li~a~~~l~~~~~~~~l~ivGdG-----p~~~~L~~~a~~l~l~~~vf~G~~~~~~~~~~~DvFv~pS~~Et~g~v~l 318 (462)
T PLN02846 244 KELLKLLHKHQKELSGLEVDLYGSG-----EDSDEVKAAAEKLELDVRVYPGRDHADPLFHDYKVFLNPSTTDVVCTTTA 318 (462)
T ss_pred HHHHHHHHHHHhhCCCeEEEEECCC-----ccHHHHHHHHHhcCCcEEEECCCCCHHHHHHhCCEEEECCCcccchHHHH
Confidence 9999999999888899999999999 5678888888887764 233468899999999999999999999
Q ss_pred HHHHcCCCEEEcCCCCccccccCC-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 043412 279 EAMSMGLPVIATNWSGPTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQARED 357 (383)
Q Consensus 279 Ea~a~G~PvI~~~~~g~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~ 357 (383)
||||||+|||+++.++ .+++.++ ||++++ |.+++++++.+++.++. ..++.++
T Consensus 319 EAmA~G~PVVa~~~~~-~~~v~~~~ng~~~~--------------------~~~~~a~ai~~~l~~~~--~~~~~~a--- 372 (462)
T PLN02846 319 EALAMGKIVVCANHPS-NEFFKQFPNCRTYD--------------------DGKGFVRATLKALAEEP--APLTDAQ--- 372 (462)
T ss_pred HHHHcCCcEEEecCCC-cceeecCCceEecC--------------------CHHHHHHHHHHHHccCc--hhHHHHH---
Confidence 9999999999999987 5888765 777775 89999999999998543 2233332
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 043412 358 MIQRFSPETVAGIVTDHIK 376 (383)
Q Consensus 358 ~~~~~s~~~~~~~~~~~~~ 376 (383)
.+.|||+..++++.++|+
T Consensus 373 -~~~~SWe~~~~~l~~~~~ 390 (462)
T PLN02846 373 -RHELSWEAATERFLRVAD 390 (462)
T ss_pred -HHhCCHHHHHHHHHHHhc
Confidence 358999999999999986
No 56
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=100.00 E-value=1.5e-31 Score=245.66 Aligned_cols=315 Identities=18% Similarity=0.136 Sum_probs=218.5
Q ss_pred CCCChhHHHHHHHHHHHhcccCCCceeeeecCCCcccc----hhhc-------CC----------ChhhhhHHHHHHhhh
Q 043412 6 SGGGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQSL----QFWE-------GL----------PHHMRNLAVELYNTE 64 (383)
Q Consensus 6 ~~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~----~~~~-------~~----------~~~~~~~~~~l~~~~ 64 (383)
..||.++++.+++++|.++|+...+............. .... .. ..........+.+++
T Consensus 13 ~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (359)
T cd03823 13 SVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDYDNPAVVAEFARLL 92 (359)
T ss_pred cccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccccceeeccccccccCCCchhhhhHHHhccCHHHHHHHHHHH
Confidence 35899999999999999998865542211111110000 0000 00 011122345667788
Q ss_pred cCCCccEEEecCCCCCCCCc--ccccCCCCCCCCCCCcccccceeeeecCCCCHHHHHhcCCCCEEEEeChHHHHHHHhc
Q 043412 65 CRTNETVVICHSEPGAWYPP--LFDTLPCPPTPGYGDFMAVIGRTMFETDRVSPEHVKRCNRMDFVWVPTDFHVSTFIRS 142 (383)
Q Consensus 65 ~~~~pDiV~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~ 142 (383)
++.+||+||+|+........ ......++.+ ...+..+.. ...........|.++++|+..++.+.+.
T Consensus 93 ~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i------~~~hd~~~~-----~~~~~~~~~~~d~ii~~s~~~~~~~~~~ 161 (359)
T cd03823 93 EDFRPDVVHFHHLQGLGVSILRAARDRGIPIV------LTLHDYWLI-----CPRQGLFKKGGDAVIAPSRFLLDRYVAN 161 (359)
T ss_pred HHcCCCEEEECCccchHHHHHHHHHhcCCCEE------EEEeeeeee-----cchhhhhccCCCEEEEeCHHHHHHHHHc
Confidence 88999999999752211110 1111112222 222222111 0111111234499999999999999997
Q ss_pred CCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCe
Q 043412 143 GVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGV 222 (383)
Q Consensus 143 ~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~ 222 (383)
+.++.++.+++||+|...+.+.... .+.+.++++++|++.+.||++.++++++.+.+ +++
T Consensus 162 ~~~~~~~~vi~n~~~~~~~~~~~~~------------------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~--~~~ 221 (359)
T cd03823 162 GLFAEKISVIRNGIDLDRAKRPRRA------------------PPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR--GDI 221 (359)
T ss_pred CCCccceEEecCCcChhhccccccC------------------CCCCceEEEEEecCccccCHHHHHHHHHHHHh--cCc
Confidence 7666799999999998776544320 13567899999999999999999999999866 799
Q ss_pred EEEEEeCCCCCCCchHHHHH----HHHhhCCCC--CccccccccCceEEecCC-CCCCChHHHHHHHcCCCEEEcCCCCc
Q 043412 223 VLYLLTNPYHSGRDFGNKIV----NFVEDSDLE--KPDDGWAPAADVFVLPSR-GEGWGRPLVEAMSMGLPVIATNWSGP 295 (383)
Q Consensus 223 ~l~i~G~~~~~~~~~~~~~~----~~~~~~~~~--~~v~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~PvI~~~~~g~ 295 (383)
+|+++|.+.... ..... ..+...|.. +++..+++.||++++||. .|++|++++|||+||+|||+++.++.
T Consensus 222 ~l~i~G~~~~~~---~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~ 298 (359)
T cd03823 222 ELVIVGNGLELE---EESYELEGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIGGM 298 (359)
T ss_pred EEEEEcCchhhh---HHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCCCH
Confidence 999999873311 11111 112223333 677889999999999997 79999999999999999999999999
Q ss_pred cccccCC-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043412 296 TEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVTDH 374 (383)
Q Consensus 296 ~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~ 374 (383)
.|++.++ +|++++++ |++++++++.++++|++.++.|++++++... .+.+++++.++
T Consensus 299 ~e~i~~~~~g~~~~~~------------------d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 356 (359)
T cd03823 299 AELVRDGVNGLLFPPG------------------DAEDLAAALERLIDDPDLLERLRAGIEPPRS----IEDQAEEYLKL 356 (359)
T ss_pred HHHhcCCCcEEEECCC------------------CHHHHHHHHHHHHhChHHHHHHHHhHHHhhh----HHHHHHHHHHH
Confidence 9999886 77777766 9999999999999999999999999877543 38899999888
Q ss_pred HH
Q 043412 375 IK 376 (383)
Q Consensus 375 ~~ 376 (383)
|+
T Consensus 357 ~~ 358 (359)
T cd03823 357 YR 358 (359)
T ss_pred hh
Confidence 86
No 57
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=100.00 E-value=1.8e-31 Score=249.24 Aligned_cols=216 Identities=16% Similarity=0.165 Sum_probs=170.5
Q ss_pred cCCCCEEEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccc-------------cCCccccccCCCCCCC
Q 043412 122 CNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLA-------------SIGKPVLGLSNMNTSS 188 (383)
Q Consensus 122 ~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~ 188 (383)
++.+|.|+++|+..++.+.+++.+++++.+||||. ...|.+......... ......+ .++
T Consensus 158 ~~~ad~ii~vS~~~~~~l~~~~~~~~ki~vI~Ng~-~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 230 (415)
T cd03816 158 GRLADYNLCVTKAMKEDLQQFNNWKIRATVLYDRP-PEQFRPLPLEEKHELFLKLAKTFLTRELRIGAVQL------SEE 230 (415)
T ss_pred hhcCCEeeecCHHHHHHHHhhhccCCCeeecCCCC-HHHceeCcHHHHHHHHHhcccccccccccccccee------cCC
Confidence 58899999999999999988888889999999994 445554332110000 0001111 134
Q ss_pred CcEEEEEeeccccccCHHHHHHHHHHHhc------cCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC-----------
Q 043412 189 KEFVFLSVFKWEYRKGWDVLLKAYLEEFS------KADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE----------- 251 (383)
Q Consensus 189 ~~~~i~~~g~~~~~K~~~~ll~a~~~l~~------~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~----------- 251 (383)
+..+++++||+.+.||++.+++|+..+.+ +.|+++|+++|+| +..+.++++++++++.
T Consensus 231 ~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G-----~~~~~l~~~~~~~~l~~~~~~~g~~~~ 305 (415)
T cd03816 231 RPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKG-----PLKEKYLERIKELKLKKVTIRTPWLSA 305 (415)
T ss_pred CceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecC-----ccHHHHHHHHHHcCCCcEEEEcCcCCH
Confidence 56788889999999999999999999875 3478999999998 4578888888887764
Q ss_pred CccccccccCceEEecC---CCCCCChHHHHHHHcCCCEEEcCCCCccccccCC-CceeeecccccccccCCCCcccccC
Q 043412 252 KPDDGWAPAADVFVLPS---RGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAE 327 (383)
Q Consensus 252 ~~v~~~~~~adi~v~ps---~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~ 327 (383)
+++..+|+.||++++|+ ..|++|++++|||+||+|||+++.++..|+++++ +|++++
T Consensus 306 ~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~~~~~G~lv~------------------- 366 (415)
T cd03816 306 EDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVKHGENGLVFG------------------- 366 (415)
T ss_pred HHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhcCCCCEEEEC-------------------
Confidence 34567789999999753 3578999999999999999999999999999886 888774
Q ss_pred CCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 043412 328 PSVDKLRALMRLVVSN---VDEAKAKGKQAREDMIQRFSPETVAGIV 371 (383)
Q Consensus 328 ~~~~~la~~i~~ll~~---~~~~~~~~~~a~~~~~~~~s~~~~~~~~ 371 (383)
|+++++++|.++++| ++.+++|++++++.. .++|+....+.
T Consensus 367 -d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~--~~~~~~~~~~~ 410 (415)
T cd03816 367 -DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES--ELRWDENWDRV 410 (415)
T ss_pred -CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh--hcCHHHHHHHH
Confidence 899999999999999 899999999999864 56776655543
No 58
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.98 E-value=4.2e-31 Score=246.10 Aligned_cols=210 Identities=19% Similarity=0.155 Sum_probs=178.4
Q ss_pred hcCCCCEEEEeChHHHHHHHh-cCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeecc
Q 043412 121 RCNRMDFVWVPTDFHVSTFIR-SGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKW 199 (383)
Q Consensus 121 ~~~~ad~vi~~s~~~~~~~~~-~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~ 199 (383)
.++.+|.++++|+..++.+.+ ++...+++.+++||++...+.+... .++.+.++++|++
T Consensus 180 ~~~~~d~ii~~S~~~~~~l~~~~~~~~~ki~vi~~gv~~~~~~~~~~--------------------~~~~~~il~~Grl 239 (407)
T cd04946 180 LLSSLDAVFPCSEQGRNYLQKRYPAYKEKIKVSYLGVSDPGIISKPS--------------------KDDTLRIVSCSYL 239 (407)
T ss_pred HHhcCCEEEECCHHHHHHHHHHCCCccccEEEEECCcccccccCCCC--------------------CCCCEEEEEeecc
Confidence 368999999999999999987 7777789999999998765543211 2457889999999
Q ss_pred ccccCHHHHHHHHHHHhccCC--CeEEEEEeCCCCCCCchHHHHHHHHhhCCCCC-----------ccccccc--cCceE
Q 043412 200 EYRKGWDVLLKAYLEEFSKAD--GVVLYLLTNPYHSGRDFGNKIVNFVEDSDLEK-----------PDDGWAP--AADVF 264 (383)
Q Consensus 200 ~~~K~~~~ll~a~~~l~~~~~--~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~--~adi~ 264 (383)
.+.||++.+++|+.++.++.| +++++++|+| +..+.++++++..+..+ ++..+|+ .+|++
T Consensus 240 ~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g-----~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~ 314 (407)
T cd04946 240 VPVKRVDLIIKALAALAKARPSIKIKWTHIGGG-----PLEDTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVF 314 (407)
T ss_pred ccccCHHHHHHHHHHHHHhCCCceEEEEEEeCc-----hHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEE
Confidence 999999999999999988876 4667889987 45677777776554432 3446664 47899
Q ss_pred EecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCC-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcC
Q 043412 265 VLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSN 343 (383)
Q Consensus 265 v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~ 343 (383)
++||..||+|++++|||+||+|||+|+.+|..|++.++ +|++++..+ |+++++++|.++++|
T Consensus 315 v~~S~~Eg~p~~llEAma~G~PVIas~vgg~~e~i~~~~~G~l~~~~~-----------------~~~~la~~I~~ll~~ 377 (407)
T cd04946 315 VNLSESEGLPVSIMEAMSFGIPVIATNVGGTPEIVDNGGNGLLLSKDP-----------------TPNELVSSLSKFIDN 377 (407)
T ss_pred EeCCccccccHHHHHHHHcCCCEEeCCCCCcHHHhcCCCcEEEeCCCC-----------------CHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999997 888776532 899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043412 344 VDEAKAKGKQAREDMIQRFSPETVAGIVT 372 (383)
Q Consensus 344 ~~~~~~~~~~a~~~~~~~~s~~~~~~~~~ 372 (383)
++.+.+|+++|++.+.++|+|+...+++.
T Consensus 378 ~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 378 EEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 99999999999999999999999988875
No 59
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.98 E-value=6.4e-31 Score=243.36 Aligned_cols=209 Identities=23% Similarity=0.296 Sum_probs=176.4
Q ss_pred HhcCCCCEEEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeecc
Q 043412 120 KRCNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKW 199 (383)
Q Consensus 120 ~~~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~ 199 (383)
..++++|.++++|+..++.+.+......++.+||||++...+.+.... ..+...++++||+
T Consensus 153 ~~~~~~d~ii~~s~~~~~~l~~~~~~~~~v~~ip~g~~~~~~~~~~~~-------------------~~~~~~i~~vgrl 213 (372)
T cd04949 153 ENLDKVDGVIVATEQQKQDLQKQFGNYNPIYTIPVGSIDPLKLPAQFK-------------------QRKPHKIITVARL 213 (372)
T ss_pred hChhhCCEEEEccHHHHHHHHHHhCCCCceEEEcccccChhhcccchh-------------------hcCCCeEEEEEcc
Confidence 346889999999999999988733233459999999998766543200 2345679999999
Q ss_pred ccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCC---------CCccccccccCceEEecCCC
Q 043412 200 EYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDL---------EKPDDGWAPAADVFVLPSRG 270 (383)
Q Consensus 200 ~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~adi~v~ps~~ 270 (383)
.+.||++.+++++.++.++.|+++|+++|.| +....+...++.+++ .+++..+|+.||++++||..
T Consensus 214 ~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~S~~ 288 (372)
T cd04949 214 APEKQLDQLIKAFAKVVKQVPDATLDIYGYG-----DEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSLLTSQS 288 (372)
T ss_pred CcccCHHHHHHHHHHHHHhCCCcEEEEEEeC-----chHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEEEecccc
Confidence 9999999999999999999999999999988 334555655555544 35667889999999999999
Q ss_pred CCCChHHHHHHHcCCCEEEcCCC-CccccccCC-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHH
Q 043412 271 EGWGRPLVEAMSMGLPVIATNWS-GPTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAK 348 (383)
Q Consensus 271 e~~~~~~~Ea~a~G~PvI~~~~~-g~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~ 348 (383)
||||++++|||++|+|||+++.+ |..+++.++ +|+++++. |+++++++|..+++|++.++
T Consensus 289 Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v~~~~~G~lv~~~------------------d~~~la~~i~~ll~~~~~~~ 350 (372)
T cd04949 289 EGFGLSLMEALSHGLPVISYDVNYGPSEIIEDGENGYLVPKG------------------DIEALAEAIIELLNDPKLLQ 350 (372)
T ss_pred cccChHHHHHHhCCCCEEEecCCCCcHHHcccCCCceEeCCC------------------cHHHHHHHHHHHHcCHHHHH
Confidence 99999999999999999999987 889999885 88888876 99999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 043412 349 AKGKQAREDMIQRFSPETVAGIV 371 (383)
Q Consensus 349 ~~~~~a~~~~~~~~s~~~~~~~~ 371 (383)
+|++++++. .++|||+.++++|
T Consensus 351 ~~~~~a~~~-~~~~s~~~~~~~w 372 (372)
T cd04949 351 KFSEAAYEN-AERYSEENVWEKW 372 (372)
T ss_pred HHHHHHHHH-HHHhhHHHHHhcC
Confidence 999999997 7899999998864
No 60
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.98 E-value=1.7e-30 Score=239.72 Aligned_cols=330 Identities=19% Similarity=0.186 Sum_probs=225.6
Q ss_pred CCCChhHHHHHHHHHHHhcccCCCceeeeecCCCcccchh---hcCCC---------hhhhhHHHHHHhhhcCCCccEEE
Q 043412 6 SGGGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQSLQF---WEGLP---------HHMRNLAVELYNTECRTNETVVI 73 (383)
Q Consensus 6 ~~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~---------~~~~~~~~~l~~~~~~~~pDiV~ 73 (383)
..||.+..+++++++|.+.|+...+ .....+....... ....+ .........+...+++.+||+||
T Consensus 12 ~~~G~~~~~~~l~~~L~~~g~~v~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~ 89 (374)
T cd03817 12 QVNGVATSIRRLAEELEKRGHEVYV--VAPSYPGAPEEEEVVVVRPFRVPTFKYPDFRLPLPIPRALIIILKELGPDIVH 89 (374)
T ss_pred CCCCeehHHHHHHHHHHHcCCeEEE--EeCCCCCCCcccccccccccccccchhhhhhccccHHHHHHHHHhhcCCCEEE
Confidence 4589999999999999999876543 2222211111000 00000 01122233445567888999999
Q ss_pred ecCCCCCCCCcc-cc-cCCCCCCCCCCCccccc----ceeeeecCCCC--HHHHHhcCCCCEEEEeChHHHHHHHhcCCC
Q 043412 74 CHSEPGAWYPPL-FD-TLPCPPTPGYGDFMAVI----GRTMFETDRVS--PEHVKRCNRMDFVWVPTDFHVSTFIRSGVD 145 (383)
Q Consensus 74 ~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~ad~vi~~s~~~~~~~~~~~~~ 145 (383)
+|+......... +. ...++.+..++...... ........... ......++.+|.++++|+..++.+.+++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~~~~~ 169 (374)
T cd03817 90 THTPFSLGLLGLRVARKLGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSEKIADLLREYGVK 169 (374)
T ss_pred ECCchhhhhHHHHHHHHcCCCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccHHHHHHHHhcCCC
Confidence 997532211111 11 11122221111111100 00000000001 122334689999999999999999887765
Q ss_pred CCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEE
Q 043412 146 PAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLY 225 (383)
Q Consensus 146 ~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~ 225 (383)
.++.++|||+|...+.+...... ..... ..++.+.++++|++.+.||++.+++++..+.++.++++++
T Consensus 170 -~~~~vi~~~~~~~~~~~~~~~~~----~~~~~-------~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~ 237 (374)
T cd03817 170 -RPIEVIPTGIDLDRFEPVDGDDE----RRKLG-------IPEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLV 237 (374)
T ss_pred -CceEEcCCccchhccCccchhHH----HHhcC-------CCCCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEE
Confidence 46999999999887765433211 01111 2456789999999999999999999999998888899999
Q ss_pred EEeCCCCCCCchHHHHHHHHhhCCCC-----------CccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCC
Q 043412 226 LLTNPYHSGRDFGNKIVNFVEDSDLE-----------KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSG 294 (383)
Q Consensus 226 i~G~~~~~~~~~~~~~~~~~~~~~~~-----------~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g 294 (383)
++|++ +..+.+++.++.+++. +++..+++.||++++||..|++|++++|||+||+|||+++.++
T Consensus 238 i~G~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~~ 312 (374)
T cd03817 238 IVGDG-----PEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAPG 312 (374)
T ss_pred EEeCC-----chHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeCCCC
Confidence 99987 4566777777666554 4566788999999999999999999999999999999999999
Q ss_pred ccccccCC-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043412 295 PTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVTD 373 (383)
Q Consensus 295 ~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~ 373 (383)
..+++.++ +|++++.+ +. ++++++.+++++++.++.|++++++.+.+ ++ +++++.+
T Consensus 313 ~~~~i~~~~~g~~~~~~------------------~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~ 369 (374)
T cd03817 313 LPDLVADGENGFLFPPG------------------DE-ALAEALLRLLQDPELRRRLSKNAEESAEK-FS---FAKKVEK 369 (374)
T ss_pred hhhheecCceeEEeCCC------------------CH-HHHHHHHHHHhChHHHHHHHHHHHHHHHH-HH---HHHHHHH
Confidence 99999984 88888765 55 99999999999999999999999997654 44 6666766
Q ss_pred HHHH
Q 043412 374 HIKD 377 (383)
Q Consensus 374 ~~~~ 377 (383)
+|++
T Consensus 370 ~~~~ 373 (374)
T cd03817 370 LYEE 373 (374)
T ss_pred HHhc
Confidence 6654
No 61
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.97 E-value=9.8e-31 Score=242.66 Aligned_cols=216 Identities=22% Similarity=0.266 Sum_probs=179.1
Q ss_pred hcCCCCEEEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccc
Q 043412 121 RCNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWE 200 (383)
Q Consensus 121 ~~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~ 200 (383)
.++.+|.++++|+..++.+...+.+..++.++|||++...+.+...... ..+.. ..++.++++++|++.
T Consensus 162 ~~~~~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~-------~~~~~~~i~~~G~~~ 230 (394)
T cd03794 162 IYRRADAIVVISPGMREYLVRRGVPPEKISVIPNGVDLELFKPPPADES----LRKEL-------GLDDKFVVLYAGNIG 230 (394)
T ss_pred HHhcCCEEEEECHHHHHHHHhcCCCcCceEEcCCCCCHHHcCCccchhh----hhhcc-------CCCCcEEEEEecCcc
Confidence 3689999999999999999877777789999999999876655432210 00001 145689999999999
Q ss_pred cccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC----------CccccccccCceEEecCCC
Q 043412 201 YRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE----------KPDDGWAPAADVFVLPSRG 270 (383)
Q Consensus 201 ~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~----------~~v~~~~~~adi~v~ps~~ 270 (383)
+.||++.+++++.++.+. ++++|+++|.+ ...+.+.+.+...+.. +++..+|+.||++++|+..
T Consensus 231 ~~k~~~~l~~~~~~l~~~-~~~~l~i~G~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~ 304 (394)
T cd03794 231 RAQGLDTLLEAAALLKDR-PDIRFLIVGDG-----PEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADVGLVPLKP 304 (394)
T ss_pred cccCHHHHHHHHHHHhhc-CCeEEEEeCCc-----ccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCeeEEeccC
Confidence 999999999999999877 89999999987 3345555544433322 4677899999999999987
Q ss_pred CCC-----ChHHHHHHHcCCCEEEcCCCCccccccC-CCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCH
Q 043412 271 EGW-----GRPLVEAMSMGLPVIATNWSGPTEYLTE-ENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNV 344 (383)
Q Consensus 271 e~~-----~~~~~Ea~a~G~PvI~~~~~g~~e~v~~-~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~ 344 (383)
|++ |++++|||++|+|||+++.++..+.+.+ ++|++++.+ |+++++++|.++++|+
T Consensus 305 ~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~~~~g~~~~~~------------------~~~~l~~~i~~~~~~~ 366 (394)
T cd03794 305 GPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEEAGAGLVVPPG------------------DPEALAAAILELLDDP 366 (394)
T ss_pred cccccccCchHHHHHHHCCCcEEEecCCCchhhhccCCcceEeCCC------------------CHHHHHHHHHHHHhCh
Confidence 765 7889999999999999999999999988 477777766 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 043412 345 DEAKAKGKQAREDMIQRFSPETVAGIV 371 (383)
Q Consensus 345 ~~~~~~~~~a~~~~~~~~s~~~~~~~~ 371 (383)
+.+++|++++++.+.++|||+.+++++
T Consensus 367 ~~~~~~~~~~~~~~~~~~s~~~~~~~~ 393 (394)
T cd03794 367 EERAEMGENGRRYVEEKFSREKLAERL 393 (394)
T ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHhc
Confidence 999999999999988899999999886
No 62
>PHA01633 putative glycosyl transferase group 1
Probab=99.97 E-value=2.6e-30 Score=229.25 Aligned_cols=240 Identities=14% Similarity=0.142 Sum_probs=177.7
Q ss_pred HHHHhcCCCCEEEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEe
Q 043412 117 EHVKRCNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSV 196 (383)
Q Consensus 117 ~~~~~~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~ 196 (383)
.+.+.+.+.+.+|++|+.+++.+++.|++.. + +|++|+|++.|.+....... .+.+.... .++.++++++
T Consensus 85 ~y~~~m~~~~~vIavS~~t~~~L~~~G~~~~-i-~I~~GVD~~~f~p~~~~~~~--~r~~~~~~------~~~~~~i~~v 154 (335)
T PHA01633 85 IVNKYLLQDVKFIPNSKFSAENLQEVGLQVD-L-PVFHGINFKIVENAEKLVPQ--LKQKLDKD------FPDTIKFGIV 154 (335)
T ss_pred HHHHHHhcCCEEEeCCHHHHHHHHHhCCCCc-e-eeeCCCChhhcCccchhhHH--HHHHhCcC------CCCCeEEEEE
Confidence 4444556677999999999999999887643 3 57899999888764421110 01111110 2467899999
Q ss_pred eccccccCHHHHHHHHHHHhccCCC----eEEEEEeCCCCCCCchHH-HHHHHHhhC---CC--CCccccccccCceEEe
Q 043412 197 FKWEYRKGWDVLLKAYLEEFSKADG----VVLYLLTNPYHSGRDFGN-KIVNFVEDS---DL--EKPDDGWAPAADVFVL 266 (383)
Q Consensus 197 g~~~~~K~~~~ll~a~~~l~~~~~~----~~l~i~G~~~~~~~~~~~-~~~~~~~~~---~~--~~~v~~~~~~adi~v~ 266 (383)
||+.++||++.+++|++++.++.|+ ++++++|.+ ...+ .+.+.+... |. .+++..+|+.||++|+
T Consensus 155 GRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~-----~~~~l~l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~ 229 (335)
T PHA01633 155 SGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHK-----QFTQLEVPANVHFVAEFGHNSREYIFAFYGAMDFTIV 229 (335)
T ss_pred eCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHH-----HHHHcCCCCcEEEEecCCCCCHHHHHHHHHhCCEEEE
Confidence 9999999999999999999887765 578777742 1110 011112222 11 2456788999999999
Q ss_pred cCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCCCceeeeccccccccc-CCCCcccccCCCHHHHHHHHHHHhcCHH
Q 043412 267 PSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTE-GPFKGHFWAEPSVDKLRALMRLVVSNVD 345 (383)
Q Consensus 267 ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~-~~~~g~~~~~~~~~~la~~i~~ll~~~~ 345 (383)
||.+|+||++++|||+||+|||+++.+++.|++.++.+++++.++..+..+ ..+.|+.++..|+++++++|.+++...+
T Consensus 230 PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~~d~~~la~ai~~~~~~~~ 309 (335)
T PHA01633 230 PSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHKFQIEDMANAIILAFELQD 309 (335)
T ss_pred CCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCceeeecCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999887789988777666554 3466788889999999999999965432
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043412 346 EAKAKGKQAREDMIQRFSPETVAGIVTD 373 (383)
Q Consensus 346 ~~~~~~~~a~~~~~~~~s~~~~~~~~~~ 373 (383)
+..++.++++. ++.|+|++++++|.+
T Consensus 310 -~~~~~~~~~~~-a~~f~~~~~~~~~~~ 335 (335)
T PHA01633 310 -REERSMKLKEL-AKKYDIRNLYTRFLE 335 (335)
T ss_pred -hhhhhHHHHHH-HHhcCHHHHHHHhhC
Confidence 23336677764 789999999999863
No 63
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.97 E-value=2e-29 Score=235.35 Aligned_cols=266 Identities=14% Similarity=0.083 Sum_probs=181.8
Q ss_pred HHHHHhhhcCCCccEEEecCCCC-CCC--CcccccCCCCCCCCCCCcc-cccceeeeecCCCCH-------HHHHhcCCC
Q 043412 57 AVELYNTECRTNETVVICHSEPG-AWY--PPLFDTLPCPPTPGYGDFM-AVIGRTMFETDRVSP-------EHVKRCNRM 125 (383)
Q Consensus 57 ~~~l~~~~~~~~pDiV~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~a 125 (383)
.-.+.+.+..++|||||.+++.. +|. ...++....+.+..||... .+..+.. ...+.. .|...+ +|
T Consensus 423 ~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~PVVasyHTny~eYl~~y~--~g~L~~~llk~l~~~v~r~-hc 499 (794)
T PLN02501 423 AGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREK--NGALQAFFVKHINNWVTRA-YC 499 (794)
T ss_pred hHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHcCCeEEEEeCCcHHHHhHhc--chhHHHHHHHHHHHHHHHh-hC
Confidence 45677888999999999998744 444 2222222223321222211 1111110 011111 122211 28
Q ss_pred CEEEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCH
Q 043412 126 DFVWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGW 205 (383)
Q Consensus 126 d~vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~ 205 (383)
|.|+++|..+.+ +. . ++....||||++.|.|....... ...+. ......++++||+.+.||+
T Consensus 500 D~VIaPS~atq~-L~-----~-~vI~nVnGVDte~F~P~~r~~~~----r~lgi-------~~~~kgiLfVGRLa~EKGl 561 (794)
T PLN02501 500 HKVLRLSAATQD-LP-----K-SVICNVHGVNPKFLKIGEKVAEE----RELGQ-------QAFSKGAYFLGKMVWAKGY 561 (794)
T ss_pred CEEEcCCHHHHH-hc-----c-cceeecccccccccCCcchhHHH----HhcCC-------ccccCceEEEEcccccCCH
Confidence 999999977774 31 1 22222379999999876542111 11111 2223447899999999999
Q ss_pred HHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCC-------CCccccccccCceEEecCCCCCCChHHH
Q 043412 206 DVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDL-------EKPDDGWAPAADVFVLPSRGEGWGRPLV 278 (383)
Q Consensus 206 ~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~adi~v~ps~~e~~~~~~~ 278 (383)
+.+++|+..+..+.++++|+|+|+| +..+.+++.+.++++ .++...+|+.+|+||+||.+|+||++++
T Consensus 562 d~LLeAla~L~~~~pnvrLvIVGDG-----P~reeLe~la~eLgL~V~FLG~~dd~~~lyasaDVFVlPS~sEgFGlVlL 636 (794)
T PLN02501 562 RELIDLLAKHKNELDGFNLDVFGNG-----EDAHEVQRAAKRLDLNLNFLKGRDHADDSLHGYKVFINPSISDVLCTATA 636 (794)
T ss_pred HHHHHHHHHHHhhCCCeEEEEEcCC-----ccHHHHHHHHHHcCCEEEecCCCCCHHHHHHhCCEEEECCCcccchHHHH
Confidence 9999999999888899999999998 456778777776553 3556679999999999999999999999
Q ss_pred HHHHcCCCEEEcCCCCccccccC-CCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 043412 279 EAMSMGLPVIATNWSGPTEYLTE-ENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQARED 357 (383)
Q Consensus 279 Ea~a~G~PvI~~~~~g~~e~v~~-~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~ 357 (383)
||||||+|||+++.++... +.+ .+|++.. |+++++++|.+++.|+..+..+..
T Consensus 637 EAMA~GlPVVATd~pG~e~-V~~g~nGll~~--------------------D~EafAeAI~~LLsd~~~rl~~~a----- 690 (794)
T PLN02501 637 EALAMGKFVVCADHPSNEF-FRSFPNCLTYK--------------------TSEDFVAKVKEALANEPQPLTPEQ----- 690 (794)
T ss_pred HHHHcCCCEEEecCCCCce-EeecCCeEecC--------------------CHHHHHHHHHHHHhCchhhhHHHH-----
Confidence 9999999999999988544 544 3665442 999999999999998875433322
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 043412 358 MIQRFSPETVAGIVTDHI 375 (383)
Q Consensus 358 ~~~~~s~~~~~~~~~~~~ 375 (383)
...+||+.+++++.+.-
T Consensus 691 -~~~~SWeAaadrLle~~ 707 (794)
T PLN02501 691 -RYNLSWEAATQRFMEYS 707 (794)
T ss_pred -HhhCCHHHHHHHHHHhh
Confidence 34899999999998764
No 64
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.96 E-value=6.8e-28 Score=221.32 Aligned_cols=192 Identities=23% Similarity=0.256 Sum_probs=152.8
Q ss_pred cCCCCEEEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeecccc
Q 043412 122 CNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEY 201 (383)
Q Consensus 122 ~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~ 201 (383)
++++|.++++|+..++.+.+... .+..+++||+|.+.+.+... ....++++|++.+
T Consensus 151 ~~~~d~ii~~S~~~~~~~~~~~~--~~~~vi~~~~d~~~~~~~~~----------------------~~~~il~~G~~~~ 206 (351)
T cd03804 151 AARVDYFIANSRFVARRIKKYYG--RDATVIYPPVDTDRFTPAEE----------------------KEDYYLSVGRLVP 206 (351)
T ss_pred hcCCCEEEECCHHHHHHHHHHhC--CCcEEECCCCCHhhcCcCCC----------------------CCCEEEEEEcCcc
Confidence 68999999999999999987422 25689999999887754321 1335889999999
Q ss_pred ccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHH----HhhCCCC--CccccccccCceEEecCCCCCCCh
Q 043412 202 RKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNF----VEDSDLE--KPDDGWAPAADVFVLPSRGEGWGR 275 (383)
Q Consensus 202 ~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~----~~~~~~~--~~v~~~~~~adi~v~ps~~e~~~~ 275 (383)
.||++.+++|+.++ + ++|+++|+|+ ..+.+++. +..+|.. +++..+++.||++++||. |++|+
T Consensus 207 ~K~~~~li~a~~~~----~-~~l~ivG~g~-----~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~-e~~g~ 275 (351)
T cd03804 207 YKRIDLAIEAFNKL----G-KRLVVIGDGP-----ELDRLRAKAGPNVTFLGRVSDEELRDLYARARAFLFPAE-EDFGI 275 (351)
T ss_pred ccChHHHHHHHHHC----C-CcEEEEECCh-----hHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCEEEECCc-CCCCc
Confidence 99999999999876 3 7999999883 33444431 1222332 336789999999999999 99999
Q ss_pred HHHHHHHcCCCEEEcCCCCccccccCC-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHH-HHHHHHHH
Q 043412 276 PLVEAMSMGLPVIATNWSGPTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVD-EAKAKGKQ 353 (383)
Q Consensus 276 ~~~Ea~a~G~PvI~~~~~g~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~-~~~~~~~~ 353 (383)
+++|||+||+|||+++.++..|++.++ +|++++++ |+++++++|.++++|++ ..+.
T Consensus 276 ~~~Eama~G~Pvi~~~~~~~~e~i~~~~~G~~~~~~------------------~~~~la~~i~~l~~~~~~~~~~---- 333 (351)
T cd03804 276 VPVEAMASGTPVIAYGKGGALETVIDGVTGILFEEQ------------------TVESLAAAVERFEKNEDFDPQA---- 333 (351)
T ss_pred hHHHHHHcCCCEEEeCCCCCcceeeCCCCEEEeCCC------------------CHHHHHHHHHHHHhCcccCHHH----
Confidence 999999999999999999999999885 88888776 99999999999999884 3333
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 043412 354 AREDMIQRFSPETVAGIV 371 (383)
Q Consensus 354 a~~~~~~~~s~~~~~~~~ 371 (383)
+++. .++|+|+++.+++
T Consensus 334 ~~~~-~~~~~~~~~~~~~ 350 (351)
T cd03804 334 IRAH-AERFSESRFREKI 350 (351)
T ss_pred HHHH-HHhcCHHHHHHHh
Confidence 3333 3579999998875
No 65
>PLN02275 transferase, transferring glycosyl groups
Probab=99.95 E-value=2.5e-27 Score=218.31 Aligned_cols=176 Identities=17% Similarity=0.154 Sum_probs=141.5
Q ss_pred cCCCCEEEEeChHHHHHHHh-cCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccc
Q 043412 122 CNRMDFVWVPTDFHVSTFIR-SGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWE 200 (383)
Q Consensus 122 ~~~ad~vi~~s~~~~~~~~~-~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~ 200 (383)
++.+|.++++|+..++.+.+ ++.+ +.+|+||. .+.|.+...... +. .++..+++++|++.
T Consensus 163 ~~~ad~ii~~S~~~~~~l~~~~g~~---i~vi~n~~-~~~f~~~~~~~~---------~~------~~~~~~i~~~grl~ 223 (371)
T PLN02275 163 GKMADGHLCVTKAMQHELDQNWGIR---ATVLYDQP-PEFFRPASLEIR---------LR------PNRPALVVSSTSWT 223 (371)
T ss_pred HhhCCEEEECCHHHHHHHHHhcCCC---eEEECCCC-HHHcCcCCchhc---------cc------CCCcEEEEEeCcee
Confidence 68899999999999999987 5663 88999985 455554322100 00 13356788999999
Q ss_pred cccCHHHHHHHHHHHh-----------------ccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC-----------C
Q 043412 201 YRKGWDVLLKAYLEEF-----------------SKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE-----------K 252 (383)
Q Consensus 201 ~~K~~~~ll~a~~~l~-----------------~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~-----------~ 252 (383)
+.||++.+++|+..+. ++.|+++|+++|+| +..+++++.++++++. +
T Consensus 224 ~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G-----~~~~~l~~~~~~~~l~~v~~~~~~~~~~ 298 (371)
T PLN02275 224 PDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKG-----PQKAMYEEKISRLNLRHVAFRTMWLEAE 298 (371)
T ss_pred ccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCC-----CCHHHHHHHHHHcCCCceEEEcCCCCHH
Confidence 9999999999998774 24589999999998 5578888888877653 4
Q ss_pred ccccccccCceEEecC---CCCCCChHHHHHHHcCCCEEEcCCCCccccccCC-CceeeecccccccccCCCCcccccCC
Q 043412 253 PDDGWAPAADVFVLPS---RGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEP 328 (383)
Q Consensus 253 ~v~~~~~~adi~v~ps---~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~ 328 (383)
++..+|+.||++++|+ ..|++|++++||||||+|||+++.+|..|++.++ +|++++
T Consensus 299 ~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~eiv~~g~~G~lv~-------------------- 358 (371)
T PLN02275 299 DYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIGELVKDGKNGLLFS-------------------- 358 (371)
T ss_pred HHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChHHHccCCCCeEEEC--------------------
Confidence 5567889999999863 2488999999999999999999999999999886 888876
Q ss_pred CHHHHHHHHHHHh
Q 043412 329 SVDKLRALMRLVV 341 (383)
Q Consensus 329 ~~~~la~~i~~ll 341 (383)
|+++++++|.+++
T Consensus 359 ~~~~la~~i~~l~ 371 (371)
T PLN02275 359 SSSELADQLLELL 371 (371)
T ss_pred CHHHHHHHHHHhC
Confidence 7999999998874
No 66
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.95 E-value=3.2e-27 Score=218.41 Aligned_cols=245 Identities=17% Similarity=0.203 Sum_probs=159.9
Q ss_pred cCCCCEEEEeChHHHHHHHh-cCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccc-------cCCCCCCCCcEEE
Q 043412 122 CNRMDFVWVPTDFHVSTFIR-SGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLG-------LSNMNTSSKEFVF 193 (383)
Q Consensus 122 ~~~ad~vi~~s~~~~~~~~~-~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~i 193 (383)
...||.++++|+.++..+.. ++.++++ |||||+|.+.|.+...... .....+..+. ...+++++++.++
T Consensus 224 a~~Ad~fttVS~it~~E~~~Ll~~~pd~--ViPNGid~~~f~~~~e~~~-~~~~~k~ki~~f~~~~~~~~~~~~~d~tli 300 (590)
T cd03793 224 AHCAHVFTTVSEITAYEAEHLLKRKPDV--VLPNGLNVKKFSALHEFQN-LHAQSKEKINEFVRGHFYGHYDFDLDKTLY 300 (590)
T ss_pred HhhCCEEEECChHHHHHHHHHhCCCCCE--EeCCCcchhhcccchhhhh-hhHHhhhhhhHHHHHHHhhhcCCCCCCeEE
Confidence 57899999999999999999 7888766 9999999999876542110 0000000000 0123345666666
Q ss_pred EE-eecccc-ccCHHHHHHHHHHHhcc----CCC---eEEEEEeCCCC-------CCCchHHHHHHHHhh----------
Q 043412 194 LS-VFKWEY-RKGWDVLLKAYLEEFSK----ADG---VVLYLLTNPYH-------SGRDFGNKIVNFVED---------- 247 (383)
Q Consensus 194 ~~-~g~~~~-~K~~~~ll~a~~~l~~~----~~~---~~l~i~G~~~~-------~~~~~~~~~~~~~~~---------- 247 (383)
++ +||++. +||+|.+|+|+.++... ..+ +-|+++-.... ...+..+++++-++.
T Consensus 301 ~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~~~~~ 380 (590)
T cd03793 301 FFTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIGKRLF 380 (590)
T ss_pred EEEeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhhhhhh
Confidence 66 899988 99999999999888752 222 33444333211 001111111111111
Q ss_pred ---------------------------------------------------------CCCC----Cc-------------
Q 043412 248 ---------------------------------------------------------SDLE----KP------------- 253 (383)
Q Consensus 248 ---------------------------------------------------------~~~~----~~------------- 253 (383)
.++. ++
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~L~~~ 460 (590)
T cd03793 381 EAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEFLSST 460 (590)
T ss_pred hHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEcccccCCC
Confidence 1111 11
Q ss_pred -------cccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCcc----ccccCC--CceeeecccccccccCCC
Q 043412 254 -------DDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPT----EYLTEE--NGYPLLVGRMSEVTEGPF 320 (383)
Q Consensus 254 -------v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~----e~v~~~--~g~~~~~~~~~~~~~~~~ 320 (383)
...+++.||++|+||++||||++++|||+||+|||+|+.+|.. |.+.++ .|+.+...+ +.-
T Consensus 461 ~~~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~-~~~----- 534 (590)
T cd03793 461 NPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRR-FKS----- 534 (590)
T ss_pred CCcCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCC-ccc-----
Confidence 1366799999999999999999999999999999999999884 554432 455554211 000
Q ss_pred CcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHhc
Q 043412 321 KGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAR-EDMIQRFSPETVAGIVTDHIKDILSS 381 (383)
Q Consensus 321 ~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~-~~~~~~~s~~~~~~~~~~~~~~~~~~ 381 (383)
.+.+.++++++|.++++. +.++++..+++ +...+.|+|+++++.|.+.|..++++
T Consensus 535 -----~~e~v~~La~~m~~~~~~-~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al~~ 590 (590)
T cd03793 535 -----PDESVQQLTQYMYEFCQL-SRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLALSR 590 (590)
T ss_pred -----hHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhC
Confidence 012789999999998854 45555555543 34578999999999999999988753
No 67
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.95 E-value=1.3e-27 Score=224.67 Aligned_cols=325 Identities=15% Similarity=0.139 Sum_probs=213.3
Q ss_pred CCChhHHHHHHHHHHHhcccCCCceeeeecC-CCc-ccchh-----hcCCChhhhhHHHHHHhhhcCCCccEEEecCCCC
Q 043412 7 GGGYSSESWSYILALNEHVKNPRFKLAIEHH-GDL-QSLQF-----WEGLPHHMRNLAVELYNTECRTNETVVICHSEPG 79 (383)
Q Consensus 7 ~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~-~~~-~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~pDiV~~~~~~~ 79 (383)
+.|-...+..+++.|.+.+....+.+.+... +.. ..... ..-+|. .....+.+++++++||+||++...
T Consensus 59 s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~P~---d~~~~~~~~l~~~~Pd~v~~~~~~- 134 (425)
T PRK05749 59 SVGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVEHRYLPY---DLPGAVRRFLRFWRPKLVIIMETE- 134 (425)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCceEEEecC---CcHHHHHHHHHhhCCCEEEEEecc-
Confidence 3467788999999999887543332322211 111 10000 112332 233567778899999999998542
Q ss_pred CCCCccccc---CCCCCCCCCCCccccccee---eeec-CCCCHHHHHhcCCCCEEEEeChHHHHHHHhcCCCCCCeEEe
Q 043412 80 AWYPPLFDT---LPCPPTPGYGDFMAVIGRT---MFET-DRVSPEHVKRCNRMDFVWVPTDFHVSTFIRSGVDPAKVVKI 152 (383)
Q Consensus 80 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi 152 (383)
.|. ..+.. ...+.+ ... ++. .... ..+.......++.+|.|++.|+..++.+.+.|++++ +.++
T Consensus 135 ~~~-~~l~~~~~~~ip~v------l~~-~~~~~~s~~~~~~~~~~~r~~~~~~d~ii~~S~~~~~~l~~~g~~~~-i~vi 205 (425)
T PRK05749 135 LWP-NLIAELKRRGIPLV------LAN-ARLSERSFKRYQKFKRFYRLLFKNIDLVLAQSEEDAERFLALGAKNE-VTVT 205 (425)
T ss_pred hhH-HHHHHHHHCCCCEE------EEe-ccCChhhHHHHHHHHHHHHHHHHhCCEEEECCHHHHHHHHHcCCCCC-cEec
Confidence 342 22211 111111 110 000 0000 011222334468899999999999999999988766 8899
Q ss_pred cCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCC
Q 043412 153 VQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYH 232 (383)
Q Consensus 153 ~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~ 232 (383)
+|+ +.+...+......... .+..+ + +++.+++++|+. .|+.+.+++|++++.++.|+++|+|+|+|+
T Consensus 206 ~n~-~~d~~~~~~~~~~~~~--~r~~~-----~--~~~~vil~~~~~--~~~~~~ll~A~~~l~~~~~~~~liivG~g~- 272 (425)
T PRK05749 206 GNL-KFDIEVPPELAARAAT--LRRQL-----A--PNRPVWIAASTH--EGEEELVLDAHRALLKQFPNLLLILVPRHP- 272 (425)
T ss_pred ccc-cccCCCChhhHHHHHH--HHHHh-----c--CCCcEEEEeCCC--chHHHHHHHHHHHHHHhCCCcEEEEcCCCh-
Confidence 884 2222221111000000 01111 0 345667777763 578999999999998888999999999872
Q ss_pred CCCchHHHHHHHHhhCCCC----------------------CccccccccCceEEe-cCCCCCCChHHHHHHHcCCCEEE
Q 043412 233 SGRDFGNKIVNFVEDSDLE----------------------KPDDGWAPAADVFVL-PSRGEGWGRPLVEAMSMGLPVIA 289 (383)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~----------------------~~v~~~~~~adi~v~-ps~~e~~~~~~~Ea~a~G~PvI~ 289 (383)
+..+++++.+++.|+. +++..+|+.||++++ +|..|++|++++|||+||+|||+
T Consensus 273 ---~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~ 349 (425)
T PRK05749 273 ---ERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVIS 349 (425)
T ss_pred ---hhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEE
Confidence 2236788888887763 257889999999555 67789999999999999999999
Q ss_pred cCC-CCccccccC--CCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHH
Q 043412 290 TNW-SGPTEYLTE--ENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPET 366 (383)
Q Consensus 290 ~~~-~g~~e~v~~--~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~ 366 (383)
++. ++..++.+. .+|.+++++ |+++++++|.++++|++.+++|+++|++.+.++ ..
T Consensus 350 g~~~~~~~e~~~~~~~~g~~~~~~------------------d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~---~~ 408 (425)
T PRK05749 350 GPHTFNFKEIFERLLQAGAAIQVE------------------DAEDLAKAVTYLLTDPDARQAYGEAGVAFLKQN---QG 408 (425)
T ss_pred CCCccCHHHHHHHHHHCCCeEEEC------------------CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC---cc
Confidence 876 556666554 356666655 999999999999999999999999999987665 36
Q ss_pred HHHHHHHHHHHHHhc
Q 043412 367 VAGIVTDHIKDILSS 381 (383)
Q Consensus 367 ~~~~~~~~~~~~~~~ 381 (383)
.++++.+.+++.+.+
T Consensus 409 ~~~~~~~~l~~~l~~ 423 (425)
T PRK05749 409 ALQRTLQLLEPYLPP 423 (425)
T ss_pred HHHHHHHHHHHhccc
Confidence 778888888877654
No 68
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.95 E-value=1.4e-27 Score=222.67 Aligned_cols=278 Identities=15% Similarity=0.147 Sum_probs=196.2
Q ss_pred ccEEEecCCCCCCCCcccccCCCCCCCCCCCcccccceeeeecCCCCHHHHHhcCCCCEEEEeChHHHHHHHh-----cC
Q 043412 69 ETVVICHSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETDRVSPEHVKRCNRMDFVWVPTDFHVSTFIR-----SG 143 (383)
Q Consensus 69 pDiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~-----~~ 143 (383)
-|+|.+|+......+.+++........++.-.....+..++..-++...+.+.+-.+|.|...+....+.|.+ .+
T Consensus 128 ~d~vwvhDYhl~l~p~~lr~~~~~~~igfFlHipfP~~e~f~~lp~r~~il~gll~~dligF~t~~~~~~Fl~~~~~~l~ 207 (456)
T TIGR02400 128 GDIVWVHDYHLMLLPAMLRELGVQNKIGFFLHIPFPSSEIYRTLPWRRELLEGLLAYDLVGFQTYDDARNFLSAVSRELG 207 (456)
T ss_pred CCEEEEecchhhHHHHHHHhhCCCCeEEEEEeCCCCChHHHhhCCcHHHHHHHHhcCCEEEECCHHHHHHHHHHHHHHhC
Confidence 4799999876655555554432211101100001111223333345666777789999999999999887765 12
Q ss_pred -----------CCCCCeEEecCCCcCCCCCCCCCCCCccccC--CccccccCCCCCCCCcEEEEEeeccccccCHHHHHH
Q 043412 144 -----------VDPAKVVKIVQPVHVGFFDPVNCDPIDLASI--GKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLK 210 (383)
Q Consensus 144 -----------~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~ 210 (383)
....++.++|||+|++.|.+........... .+..+ +++++|+++||+++.||++.+++
T Consensus 208 ~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~--------~~~~vIl~VgRLd~~KGi~~ll~ 279 (456)
T TIGR02400 208 LETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESL--------KGRKLIIGVDRLDYSKGLPERLL 279 (456)
T ss_pred CcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHc--------CCCeEEEEccccccccCHHHHHH
Confidence 1345788999999999886643321100000 00011 35789999999999999999999
Q ss_pred HHHHHhccCCC----eEEEEEeCCCCCCCchHHHHHHHHhhC-----------CC-----------CCccccccccCceE
Q 043412 211 AYLEEFSKADG----VVLYLLTNPYHSGRDFGNKIVNFVEDS-----------DL-----------EKPDDGWAPAADVF 264 (383)
Q Consensus 211 a~~~l~~~~~~----~~l~i~G~~~~~~~~~~~~~~~~~~~~-----------~~-----------~~~v~~~~~~adi~ 264 (383)
|++++++++|+ +.|+++|.+..++.+....+++.++++ +. .+++..+|+.||++
T Consensus 280 A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~ 359 (456)
T TIGR02400 280 AFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAADVG 359 (456)
T ss_pred HHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEE
Confidence 99999888886 568777654323334444444444332 11 25567889999999
Q ss_pred EecCCCCCCChHHHHHHHcCCC----EEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHH
Q 043412 265 VLPSRGEGWGRPLVEAMSMGLP----VIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLV 340 (383)
Q Consensus 265 v~ps~~e~~~~~~~Ea~a~G~P----vI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~l 340 (383)
++||..||||++++||||||+| +|+|+.+|..+.+. +|+++++. |+++++++|.++
T Consensus 360 vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l~--~gllVnP~------------------d~~~lA~aI~~a 419 (456)
T TIGR02400 360 LVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQELN--GALLVNPY------------------DIDGMADAIARA 419 (456)
T ss_pred EECccccccCccHHHHHHhcCCCCceEEEeCCCCChHHhC--CcEEECCC------------------CHHHHHHHHHHH
Confidence 9999999999999999999999 99999988888774 67777776 999999999999
Q ss_pred hc-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043412 341 VS-NVDEAKAKGKQAREDMIQRFSPETVAGIVTDHI 375 (383)
Q Consensus 341 l~-~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~ 375 (383)
++ ++++++++.+++++++ .+||+..+++++.+-+
T Consensus 420 L~~~~~er~~r~~~~~~~v-~~~~~~~W~~~~l~~l 454 (456)
T TIGR02400 420 LTMPLEEREERHRAMMDKL-RKNDVQRWREDFLSDL 454 (456)
T ss_pred HcCCHHHHHHHHHHHHHHH-hhCCHHHHHHHHHHHh
Confidence 98 5677888888888875 5699999999988654
No 69
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.95 E-value=1.4e-27 Score=224.48 Aligned_cols=277 Identities=14% Similarity=0.103 Sum_probs=189.8
Q ss_pred CccEEEecCCCCCCCCcccccCCC-CCC-CCCCCcccccceeeeecCCCCHHHHHhcCCCCEEEEeChHHHHHHHh----
Q 043412 68 NETVVICHSEPGAWYPPLFDTLPC-PPT-PGYGDFMAVIGRTMFETDRVSPEHVKRCNRMDFVWVPTDFHVSTFIR---- 141 (383)
Q Consensus 68 ~pDiV~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~---- 141 (383)
..|+|++|+......+.++..... ..+ ..+|.. .-+...|..-.....+...+-.+|.|...+....+.+.+
T Consensus 131 ~~d~iwihDyhl~llp~~lr~~~~~~~i~~f~Hip--fP~~e~~~~lp~~~~ll~~~l~~D~igF~t~~~~~~Fl~~~~~ 208 (460)
T cd03788 131 PGDLVWVHDYHLLLLPQMLRERGPDARIGFFLHIP--FPSSEIFRCLPWREELLRGLLGADLIGFQTERYARNFLSCCSR 208 (460)
T ss_pred CCCEEEEeChhhhHHHHHHHhhCCCCeEEEEEeCC--CCChHHHhhCCChHHHHHHHhcCCEEEECCHHHHHHHHHHHHH
Confidence 569999998765544444433211 111 001100 011122332334455666677799999999776655443
Q ss_pred -cC------------CCCCCeEEecCCCcCCCCCCCCCCCCccc-cCCccccccCCCCCCCCcEEEEEeeccccccCHHH
Q 043412 142 -SG------------VDPAKVVKIVQPVHVGFFDPVNCDPIDLA-SIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDV 207 (383)
Q Consensus 142 -~~------------~~~~~i~vi~ngid~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ 207 (383)
.+ ....++.++|||+|.+.|.+......... .+.... ..+++++|+++||+++.||++.
T Consensus 209 ~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~~~~~~~~~~~~-------~~~~~~~il~vgRl~~~Kgi~~ 281 (460)
T cd03788 209 LLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASPEVQERAAELRE-------RLGGRKLIVGVDRLDYSKGIPE 281 (460)
T ss_pred HcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCchhHHHHHHHHH-------hcCCCEEEEEecCccccCCHHH
Confidence 11 12247899999999988875433211100 000011 1356889999999999999999
Q ss_pred HHHHHHHHhccCCC----eEEEEEeCCCCCCCc----hHHHHHHHHhhC----C--------------CCCccccccccC
Q 043412 208 LLKAYLEEFSKADG----VVLYLLTNPYHSGRD----FGNKIVNFVEDS----D--------------LEKPDDGWAPAA 261 (383)
Q Consensus 208 ll~a~~~l~~~~~~----~~l~i~G~~~~~~~~----~~~~~~~~~~~~----~--------------~~~~v~~~~~~a 261 (383)
+++|+.++++++|+ ++|+++|.+...+.+ +.+++++++... + -.+++..+|+.|
T Consensus 282 ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~a 361 (460)
T cd03788 282 RLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAA 361 (460)
T ss_pred HHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhc
Confidence 99999999888886 678888765322222 334444443332 1 114567889999
Q ss_pred ceEEecCCCCCCChHHHHHHHcCCC----EEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHH
Q 043412 262 DVFVLPSRGEGWGRPLVEAMSMGLP----VIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALM 337 (383)
Q Consensus 262 di~v~ps~~e~~~~~~~Ea~a~G~P----vI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i 337 (383)
|++++||..||||++++|||+||+| ||+|+.+|..+. ..+|+++++. |+++++++|
T Consensus 362 Dv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~--~~~g~lv~p~------------------d~~~la~ai 421 (460)
T cd03788 362 DVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE--LSGALLVNPY------------------DIDEVADAI 421 (460)
T ss_pred cEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh--cCCCEEECCC------------------CHHHHHHHH
Confidence 9999999999999999999999999 999998888776 3467777766 999999999
Q ss_pred HHHhcCH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043412 338 RLVVSNV-DEAKAKGKQAREDMIQRFSPETVAGIVTDH 374 (383)
Q Consensus 338 ~~ll~~~-~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~ 374 (383)
.++++++ +.+..+.+++++.+ ++||++.+++++.+-
T Consensus 422 ~~~l~~~~~e~~~~~~~~~~~v-~~~~~~~w~~~~l~~ 458 (460)
T cd03788 422 HRALTMPLEERRERHRKLREYV-RTHDVQAWANSFLDD 458 (460)
T ss_pred HHHHcCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHh
Confidence 9999855 67788888888875 789999999998764
No 70
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=4.4e-25 Score=203.53 Aligned_cols=246 Identities=19% Similarity=0.162 Sum_probs=189.0
Q ss_pred HHHhcCCCCEEEEeChHHHHHHHh--cC--------CCCCCeEEecCCCcCCCCCCCCCCCCcc---------ccCCccc
Q 043412 118 HVKRCNRMDFVWVPTDFHVSTFIR--SG--------VDPAKVVKIVQPVHVGFFDPVNCDPIDL---------ASIGKPV 178 (383)
Q Consensus 118 ~~~~~~~ad~vi~~s~~~~~~~~~--~~--------~~~~~i~vi~ngid~~~~~~~~~~~~~~---------~~~~~~~ 178 (383)
.+..+..||.|.++|+..++.+.. +| ....++.-|-||+|.+...|........ ....+..
T Consensus 202 lK~gi~~ad~vttVSptYa~Ei~t~~~g~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~ 281 (487)
T COG0297 202 LKGGLYYADAVTTVSPTYAGEIYTPEYGEGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVA 281 (487)
T ss_pred hhhhheeccEEEEECHHHHHhhccccccccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHH
Confidence 334478899999999999988762 21 1236889999999999888765532210 1011111
Q ss_pred cccCCCCCC--CCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC-----
Q 043412 179 LGLSNMNTS--SKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE----- 251 (383)
Q Consensus 179 l~~~~~~~~--~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~----- 251 (383)
++ ..++++ .+.+++.++||+..+||++.+++++..+.++. +++++.|.| +..+...+..+.+.+...
T Consensus 282 L~-~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~--~~~vilG~g---d~~le~~~~~la~~~~~~~~~~i 355 (487)
T COG0297 282 LQ-ERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELLEQG--WQLVLLGTG---DPELEEALRALASRHPGRVLVVI 355 (487)
T ss_pred HH-HHhCCCCCCCCcEEEEeeccccccchhHHHHHHHHHHHhC--ceEEEEecC---cHHHHHHHHHHHHhcCceEEEEe
Confidence 11 223333 57799999999999999999999999998875 999999998 457777788777766542
Q ss_pred ---C-ccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccC
Q 043412 252 ---K-PDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAE 327 (383)
Q Consensus 252 ---~-~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~ 327 (383)
+ -...+++.+|++++||++|++|++-++||..|++.|+..+||.+|.|.+.+-.. ..+.++|+++.+
T Consensus 356 ~~~~~la~~i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~---------~~~~gtGf~f~~ 426 (487)
T COG0297 356 GYDEPLAHLIYAGADVILMPSRFEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWL---------IQGVGTGFLFLQ 426 (487)
T ss_pred eecHHHHHHHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceEcccCCccceecCccchh---------ccCceeEEEEec
Confidence 1 125777999999999999999999999999999999999999999998642211 234477888888
Q ss_pred CCHHHHHHHHHHHhc---CHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 043412 328 PSVDKLRALMRLVVS---NVDE-AKAKGKQAREDMIQRFSPETVAGIVTDHIKDILSS 381 (383)
Q Consensus 328 ~~~~~la~~i~~ll~---~~~~-~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~~~~ 381 (383)
.++++++.+|++.+. ++.. .+.+..++.. ..|+|+..+++|.++|+.+++.
T Consensus 427 ~~~~~l~~al~rA~~~y~~~~~~w~~~~~~~m~---~d~sw~~sa~~y~~lY~~~~~~ 481 (487)
T COG0297 427 TNPDHLANALRRALVLYRAPPLLWRKVQPNAMG---ADFSWDLSAKEYVELYKPLLSK 481 (487)
T ss_pred CCHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcc---cccCchhHHHHHHHHHHHHhcc
Confidence 899999999998776 4444 6777776643 6899999999999999998764
No 71
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.93 E-value=9.6e-25 Score=201.96 Aligned_cols=215 Identities=12% Similarity=0.094 Sum_probs=157.9
Q ss_pred cCCCCEEEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeecccc
Q 043412 122 CNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEY 201 (383)
Q Consensus 122 ~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~ 201 (383)
.+.+|.++++|+..++.+.+.|++++++.+++++++.++..+... ....+.+++ ++++.++++++|+...
T Consensus 148 ~~~~d~~~~~s~~~~~~l~~~g~~~~ki~v~g~~v~~~f~~~~~~---~~~~r~~~g-------l~~~~~~il~~Gg~~g 217 (382)
T PLN02605 148 HKGVTRCFCPSEEVAKRALKRGLEPSQIRVYGLPIRPSFARAVRP---KDELRRELG-------MDEDLPAVLLMGGGEG 217 (382)
T ss_pred cCCCCEEEECCHHHHHHHHHcCCCHHHEEEECcccCHhhccCCCC---HHHHHHHcC-------CCCCCcEEEEECCCcc
Confidence 378999999999999999999999999999999998754433211 111122333 4678899999999888
Q ss_pred ccCHHHHHHHHHHHhc----cCCCeE-EEEEeCCCCCCCchHHHHHHH-----HhhCCCCCccccccccCceEEecCCCC
Q 043412 202 RKGWDVLLKAYLEEFS----KADGVV-LYLLTNPYHSGRDFGNKIVNF-----VEDSDLEKPDDGWAPAADVFVLPSRGE 271 (383)
Q Consensus 202 ~K~~~~ll~a~~~l~~----~~~~~~-l~i~G~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~adi~v~ps~~e 271 (383)
.|++..+++++..+.. ..++.+ ++++|.+ ....+.+++. +.-+|..+++..+|+.||++|.++
T Consensus 218 ~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~----~~~~~~L~~~~~~~~v~~~G~~~~~~~l~~aaDv~V~~~--- 290 (382)
T PLN02605 218 MGPLEETARALGDSLYDKNLGKPIGQVVVICGRN----KKLQSKLESRDWKIPVKVRGFVTNMEEWMGACDCIITKA--- 290 (382)
T ss_pred cccHHHHHHHHHHhhccccccCCCceEEEEECCC----HHHHHHHHhhcccCCeEEEeccccHHHHHHhCCEEEECC---
Confidence 9999999999876541 235665 5666654 1334445443 223466688999999999999865
Q ss_pred CCChHHHHHHHcCCCEEEcCC------CCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcC-H
Q 043412 272 GWGRPLVEAMSMGLPVIATNW------SGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSN-V 344 (383)
Q Consensus 272 ~~~~~~~Ea~a~G~PvI~~~~------~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~-~ 344 (383)
.|++++|||+||+|+|+++. ++...+++.+.|+.+ .|+++++++|.++++| +
T Consensus 291 -g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~g~g~~~--------------------~~~~~la~~i~~ll~~~~ 349 (382)
T PLN02605 291 -GPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDNGFGAFS--------------------ESPKEIARIVAEWFGDKS 349 (382)
T ss_pred -CcchHHHHHHcCCCEEEecCCCccchhhHHHHHhCCceeec--------------------CCHHHHHHHHHHHHcCCH
Confidence 47899999999999999984 333334434455433 2999999999999998 9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043412 345 DEAKAKGKQAREDMIQRFSPETVAGIVTDHI 375 (383)
Q Consensus 345 ~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~ 375 (383)
+.+++|++++++. ....+.+.+++.+.+..
T Consensus 350 ~~~~~m~~~~~~~-~~~~a~~~i~~~l~~~~ 379 (382)
T PLN02605 350 DELEAMSENALKL-ARPEAVFDIVHDLHELV 379 (382)
T ss_pred HHHHHHHHHHHHh-cCCchHHHHHHHHHHHh
Confidence 9999999999886 45667777776665543
No 72
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.92 E-value=1.2e-24 Score=200.24 Aligned_cols=260 Identities=13% Similarity=0.009 Sum_probs=174.6
Q ss_pred hhHHHHHHhhhcCCCccEEEecCCCCCCCCcccccCCCCCCCCCCCcccccceeeeecCCCCHHHHH-hcCCCCEEEEeC
Q 043412 54 RNLAVELYNTECRTNETVVICHSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETDRVSPEHVK-RCNRMDFVWVPT 132 (383)
Q Consensus 54 ~~~~~~l~~~~~~~~pDiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ad~vi~~s 132 (383)
.....++.+++++.+||+||+|+....+...........+. +.+... . +.....+ .++.+|.+++.+
T Consensus 77 ~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~-----v~~~~~--~-----~~~~~~r~~~~~~d~ii~~~ 144 (357)
T PRK00726 77 LKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPL-----VIHEQN--A-----VPGLANKLLARFAKKVATAF 144 (357)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCE-----EEEcCC--C-----CccHHHHHHHHHhchheECc
Confidence 34455677788899999999997554443222222111111 111111 0 1111122 356789999988
Q ss_pred hHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHH-HH
Q 043412 133 DFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLL-KA 211 (383)
Q Consensus 133 ~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll-~a 211 (383)
+... .+ .+..++.++|||++.+.+.+.... .+.. .+++.++++++|+....|+...++ +|
T Consensus 145 ~~~~---~~--~~~~~i~vi~n~v~~~~~~~~~~~-------~~~~-------~~~~~~~i~~~gg~~~~~~~~~~l~~a 205 (357)
T PRK00726 145 PGAF---PE--FFKPKAVVTGNPVREEILALAAPP-------ARLA-------GREGKPTLLVVGGSQGARVLNEAVPEA 205 (357)
T ss_pred hhhh---hc--cCCCCEEEECCCCChHhhcccchh-------hhcc-------CCCCCeEEEEECCcHhHHHHHHHHHHH
Confidence 7442 22 566799999999998765432211 1111 235677888888877778765555 88
Q ss_pred HHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCC-------CCCccccccccCceEEecCCCCCCChHHHHHHHcC
Q 043412 212 YLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSD-------LEKPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMG 284 (383)
Q Consensus 212 ~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G 284 (383)
+.++... + ..++++|++ +. +.+.+..+ ++ ..+++..+++.||+++.++ .+++++|||++|
T Consensus 206 ~~~~~~~-~-~~~~~~G~g-----~~-~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~d~~i~~~----g~~~~~Ea~~~g 272 (357)
T PRK00726 206 LALLPEA-L-QVIHQTGKG-----DL-EEVRAAYA-AGINAEVVPFIDDMAAAYAAADLVICRA----GASTVAELAAAG 272 (357)
T ss_pred HHHhhhC-c-EEEEEcCCC-----cH-HHHHHHhh-cCCcEEEeehHhhHHHHHHhCCEEEECC----CHHHHHHHHHhC
Confidence 8887544 3 567788887 22 33333333 33 3367889999999999866 268999999999
Q ss_pred CCEEEcCCCCcc--------ccc-cCCCceeeecccccccccCCCCcccccCCC--HHHHHHHHHHHhcCHHHHHHHHHH
Q 043412 285 LPVIATNWSGPT--------EYL-TEENGYPLLVGRMSEVTEGPFKGHFWAEPS--VDKLRALMRLVVSNVDEAKAKGKQ 353 (383)
Q Consensus 285 ~PvI~~~~~g~~--------e~v-~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~--~~~la~~i~~ll~~~~~~~~~~~~ 353 (383)
+|+|+++.++.. +.+ +.++|++++++ | +++++++|.++++|++.+++|+++
T Consensus 273 ~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~------------------~~~~~~l~~~i~~ll~~~~~~~~~~~~ 334 (357)
T PRK00726 273 LPAILVPLPHAADDHQTANARALVDAGAALLIPQS------------------DLTPEKLAEKLLELLSDPERLEAMAEA 334 (357)
T ss_pred CCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcc------------------cCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 999999864322 333 34677777655 5 999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 043412 354 AREDMIQRFSPETVAGIVTDHIK 376 (383)
Q Consensus 354 a~~~~~~~~s~~~~~~~~~~~~~ 376 (383)
+++. .+.++.+.+++.+.++.+
T Consensus 335 ~~~~-~~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 335 ARAL-GKPDAAERLADLIEELAR 356 (357)
T ss_pred HHhc-CCcCHHHHHHHHHHHHhh
Confidence 9986 578999999988887764
No 73
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.92 E-value=2e-24 Score=213.43 Aligned_cols=285 Identities=13% Similarity=0.108 Sum_probs=196.7
Q ss_pred cEEEecCCCCCCCCcccccCCCCCCCCCCCcccccceeeeecCCCCHHHHHhcCCCCEEEEeChHHHHHHHh-----cCC
Q 043412 70 TVVICHSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETDRVSPEHVKRCNRMDFVWVPTDFHVSTFIR-----SGV 144 (383)
Q Consensus 70 DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~-----~~~ 144 (383)
|+|-+|..+....+.+++........++.-....-...++..-++...+.+.+-.||.|-+.+....+.|.+ .+.
T Consensus 149 d~vWvhDYhL~llp~~lR~~~~~~~igfFlHiPFPs~e~fr~lp~r~~il~gll~aDligF~t~~y~r~Fl~~~~r~l~~ 228 (797)
T PLN03063 149 DVVWCHDYHLMFLPQYLKEYNNKMKVGWFLHTPFPSSEIYKTLPSRSELLRAVLTADLIGFHTYDFARHFLSACTRILGV 228 (797)
T ss_pred CEEEEecchhhhHHHHHHHhCCCCcEEEEecCCCCCHHHHhhCCCHHHHHHHHhcCCEEEeCCHHHHHHHHHHHHHHhCc
Confidence 799999866655554444332111101100001111122333345566777789999999999999987765 222
Q ss_pred -----------CCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHH
Q 043412 145 -----------DPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYL 213 (383)
Q Consensus 145 -----------~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~ 213 (383)
...++.++|||||++.|.+...............- ..+++.+|+++||+++.||++.+++|+.
T Consensus 229 ~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~------~~~~~~lIl~VgRLd~~KGi~~lL~Afe 302 (797)
T PLN03063 229 EGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKR------FFAGRKVILGVDRLDMIKGIPQKYLAFE 302 (797)
T ss_pred cccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHH------hcCCCeEEEEecccccccCHHHHHHHHH
Confidence 12478899999999887654321110000000000 0135788999999999999999999999
Q ss_pred HHhccCCCeE----EEEEeCCCCCCCchHHHHHHHHhhCC--CC--------------------CccccccccCceEEec
Q 043412 214 EEFSKADGVV----LYLLTNPYHSGRDFGNKIVNFVEDSD--LE--------------------KPDDGWAPAADVFVLP 267 (383)
Q Consensus 214 ~l~~~~~~~~----l~i~G~~~~~~~~~~~~~~~~~~~~~--~~--------------------~~v~~~~~~adi~v~p 267 (383)
++++++|+++ |+.++.+...+.+..+.+++.++++. +. +++..+|+.||++++|
T Consensus 303 ~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvvt 382 (797)
T PLN03063 303 KFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVT 382 (797)
T ss_pred HHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEeC
Confidence 9998888753 45444332223344455555554432 11 3456899999999999
Q ss_pred CCCCCCChHHHHHHHcCCC----EEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhc-
Q 043412 268 SRGEGWGRPLVEAMSMGLP----VIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVS- 342 (383)
Q Consensus 268 s~~e~~~~~~~Ea~a~G~P----vI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~- 342 (383)
|..||+|++++||||||+| +|+|..+|..+.+ ..+|++++|. |+++++++|.++++
T Consensus 383 SlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l-~~~allVnP~------------------D~~~lA~AI~~aL~m 443 (797)
T PLN03063 383 SLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQSL-GAGALLVNPW------------------NITEVSSAIKEALNM 443 (797)
T ss_pred ccccccCcchhhHheeecCCCCCEEeeCCcCchhhh-cCCeEEECCC------------------CHHHHHHHHHHHHhC
Confidence 9999999999999999999 9999999988876 2356777665 99999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 043412 343 NVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIKDILS 380 (383)
Q Consensus 343 ~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~~~ 380 (383)
++++++.+.+..+++ ..+++|..+++.+.+.++++..
T Consensus 444 ~~~er~~r~~~~~~~-v~~~~~~~Wa~~fl~~l~~~~~ 480 (797)
T PLN03063 444 SDEERETRHRHNFQY-VKTHSAQKWADDFMSELNDIIV 480 (797)
T ss_pred CHHHHHHHHHHHHHh-hhhCCHHHHHHHHHHHHHHHhh
Confidence 778888888888886 5789999999999998887753
No 74
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.91 E-value=8.6e-24 Score=173.77 Aligned_cols=149 Identities=28% Similarity=0.478 Sum_probs=130.6
Q ss_pred CCCCcEEEEEeeccccccCHHHHHHHHHHHhcc-CCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCCC-----------c
Q 043412 186 TSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSK-ADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLEK-----------P 253 (383)
Q Consensus 186 ~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~-~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 253 (383)
.++++++|+++|++.+.||++.+++++..+.++ .++++++|+|.+ .....+...++..++.+ +
T Consensus 11 ~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 85 (172)
T PF00534_consen 11 IPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDG-----EYKKELKNLIEKLNLKENIIFLGYVPDDE 85 (172)
T ss_dssp T-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHC-----CHHHHHHHHHHHTTCGTTEEEEESHSHHH
T ss_pred CCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccc-----ccccccccccccccccccccccccccccc
Confidence 357899999999999999999999999999875 789999999965 66788888888887752 4
Q ss_pred cccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCC-CceeeecccccccccCCCCcccccCCCHHH
Q 043412 254 DDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDK 332 (383)
Q Consensus 254 v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 332 (383)
+..+++.||++++||..|++|++++|||++|+|||+++.++..|++.++ +|+++++. |+++
T Consensus 86 l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~~~~~~------------------~~~~ 147 (172)
T PF00534_consen 86 LDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGFLFDPN------------------DIEE 147 (172)
T ss_dssp HHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEEEESTT------------------SHHH
T ss_pred cccccccceeccccccccccccccccccccccceeeccccCCceeeccccceEEeCCC------------------CHHH
Confidence 5688899999999999999999999999999999999999999999886 67877766 9999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Q 043412 333 LRALMRLVVSNVDEAKAKGKQARED 357 (383)
Q Consensus 333 la~~i~~ll~~~~~~~~~~~~a~~~ 357 (383)
++++|.+++++++.++.|+++++++
T Consensus 148 l~~~i~~~l~~~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 148 LADAIEKLLNDPELRQKLGKNARER 172 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHhcCC
Confidence 9999999999999999999999874
No 75
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.91 E-value=4.6e-23 Score=191.17 Aligned_cols=265 Identities=13% Similarity=0.112 Sum_probs=176.3
Q ss_pred HHHHhhhcCCCccEEEecCCCCCCCCcccccCCCCCCCCCCCcccccceeeeecCCCCHHHHHhcCCCCEEEEeChHHHH
Q 043412 58 VELYNTECRTNETVVICHSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETDRVSPEHVKRCNRMDFVWVPTDFHVS 137 (383)
Q Consensus 58 ~~l~~~~~~~~pDiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~ 137 (383)
.++.+++++++||+||++++.... + .+.......+ +.+...... .....| .++++|.++++|+..++
T Consensus 94 ~~l~~~l~~~~pD~Vi~~~~~~~~-~-~~~~~~~~~i---p~~~~~td~------~~~~~~--~~~~ad~i~~~s~~~~~ 160 (380)
T PRK13609 94 KRLKLLLQAEKPDIVINTFPIIAV-P-ELKKQTGISI---PTYNVLTDF------CLHKIW--VHREVDRYFVATDHVKK 160 (380)
T ss_pred HHHHHHHHHhCcCEEEEcChHHHH-H-HHHHhcCCCC---CeEEEeCCC------CCCccc--ccCCCCEEEECCHHHHH
Confidence 567888999999999998653321 1 1111111111 111100000 001111 24689999999999999
Q ss_pred HHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCC-cEEEEEeeccccccCHHHHHHHHHHHh
Q 043412 138 TFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSK-EFVFLSVFKWEYRKGWDVLLKAYLEEF 216 (383)
Q Consensus 138 ~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~i~~~g~~~~~K~~~~ll~a~~~l~ 216 (383)
.+.+.|++++++.+++++++.....+.... ..+.+++ ++++ .+++++.|++...|+++.+++++.+
T Consensus 161 ~l~~~gi~~~ki~v~G~p~~~~f~~~~~~~----~~~~~~~-------l~~~~~~il~~~G~~~~~k~~~~li~~l~~-- 227 (380)
T PRK13609 161 VLVDIGVPPEQVVETGIPIRSSFELKINPD----IIYNKYQ-------LCPNKKILLIMAGAHGVLGNVKELCQSLMS-- 227 (380)
T ss_pred HHHHcCCChhHEEEECcccChHHcCcCCHH----HHHHHcC-------CCCCCcEEEEEcCCCCCCcCHHHHHHHHhh--
Confidence 999999988899998887754322111110 1112223 2343 4566777888888999998888753
Q ss_pred ccCCCeEEEEEeCCCCCCCchHHHHHHHHhhC-------CCCCccccccccCceEEecCCCCCCChHHHHHHHcCCCEEE
Q 043412 217 SKADGVVLYLLTNPYHSGRDFGNKIVNFVEDS-------DLEKPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIA 289 (383)
Q Consensus 217 ~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~ 289 (383)
.++++++++|++ +....+.+++.++.. |..+++..+|+.||+++. ++.|++++|||+||+|+|+
T Consensus 228 --~~~~~~viv~G~---~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~~v~----~~gg~t~~EA~a~g~PvI~ 298 (380)
T PRK13609 228 --VPDLQVVVVCGK---NEALKQSLEDLQETNPDALKVFGYVENIDELFRVTSCMIT----KPGGITLSEAAALGVPVIL 298 (380)
T ss_pred --CCCcEEEEEeCC---CHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHhccEEEe----CCCchHHHHHHHhCCCEEE
Confidence 378999887643 123456666665543 334677889999999884 4568999999999999999
Q ss_pred cC-CCCcc----ccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCH
Q 043412 290 TN-WSGPT----EYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSP 364 (383)
Q Consensus 290 ~~-~~g~~----e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~ 364 (383)
++ .+|.. +++. ++|..+... |+++++++|.++++|++.+++|++++++. ...+++
T Consensus 299 ~~~~~g~~~~n~~~~~-~~G~~~~~~------------------~~~~l~~~i~~ll~~~~~~~~m~~~~~~~-~~~~s~ 358 (380)
T PRK13609 299 YKPVPGQEKENAMYFE-RKGAAVVIR------------------DDEEVFAKTEALLQDDMKLLQMKEAMKSL-YLPEPA 358 (380)
T ss_pred CCCCCCcchHHHHHHH-hCCcEEEEC------------------CHHHHHHHHHHHHCCHHHHHHHHHHHHHh-CCCchH
Confidence 86 44421 1222 233333333 99999999999999999999999998874 567899
Q ss_pred HHHHHHHHHHHHH
Q 043412 365 ETVAGIVTDHIKD 377 (383)
Q Consensus 365 ~~~~~~~~~~~~~ 377 (383)
+.+++.+.+.+..
T Consensus 359 ~~i~~~i~~~~~~ 371 (380)
T PRK13609 359 DHIVDDILAENHV 371 (380)
T ss_pred HHHHHHHHHhhhh
Confidence 9999999888764
No 76
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.91 E-value=7.3e-23 Score=185.90 Aligned_cols=232 Identities=17% Similarity=0.184 Sum_probs=181.2
Q ss_pred cCCCCEEEEeChHHHHHHHh--cCCCCCCeEEecCCCcCCCCCCCCCC---CCccccCCccccccCCCCCCCCcEEEEEe
Q 043412 122 CNRMDFVWVPTDFHVSTFIR--SGVDPAKVVKIVQPVHVGFFDPVNCD---PIDLASIGKPVLGLSNMNTSSKEFVFLSV 196 (383)
Q Consensus 122 ~~~ad~vi~~s~~~~~~~~~--~~~~~~~i~vi~ngid~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~i~~~ 196 (383)
...++.+++.|...+..+.. ......++.+.+.++|.+.+.+.... ....+.+...+ .......+..+
T Consensus 207 ~~~~~~~~~ns~~~~~~f~~~~~~L~~~d~~~~y~ei~~s~~~~~~~~~~~~~~~~~r~~~~-------v~~~d~~~~si 279 (495)
T KOG0853|consen 207 TGLAWKILVNSYFTKRQFKATFVSLSNSDITSTYPEIDGSWFTYGQYESHLELRLPVRLYRG-------VSGIDRFFPSI 279 (495)
T ss_pred hhccceEecchhhhhhhhhhhhhhcCCCCcceeeccccchhccccccccchhcccccceeee-------ecccceEeeee
Confidence 46789999999999988876 23444568899999998776642211 11111122222 24568889999
Q ss_pred eccccccCHHHHHHHHHHHhccC-----CCeEEEEEeCC-----CCCCCchHHHHHHHHhhCCCCCcc------------
Q 043412 197 FKWEYRKGWDVLLKAYLEEFSKA-----DGVVLYLLTNP-----YHSGRDFGNKIVNFVEDSDLEKPD------------ 254 (383)
Q Consensus 197 g~~~~~K~~~~ll~a~~~l~~~~-----~~~~l~i~G~~-----~~~~~~~~~~~~~~~~~~~~~~~v------------ 254 (383)
.++.+.|+++.+++++.++.... ++.+++++|+. ..++..+..++.++++++++..+.
T Consensus 280 N~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~ 359 (495)
T KOG0853|consen 280 NRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPSTTRVAK 359 (495)
T ss_pred eecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecCCchHHH
Confidence 99999999999999999988776 56888888832 124456778889999999885332
Q ss_pred ccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCC-CceeeecccccccccCCCCcccccCCCHH--
Q 043412 255 DGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVD-- 331 (383)
Q Consensus 255 ~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-- 331 (383)
..+++.+.+++.....|.||++++|||+||+|||+++.||..|++.++ +|+++++ +.+
T Consensus 360 yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~~tG~l~dp-------------------~~e~~ 420 (495)
T KOG0853|consen 360 YRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEIVVHGVTGLLIDP-------------------GQEAV 420 (495)
T ss_pred HHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEEEEcCCcceeeCC-------------------chHHH
Confidence 233456665555444599999999999999999999999999999997 9998887 344
Q ss_pred -HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 043412 332 -KLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIKDIL 379 (383)
Q Consensus 332 -~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~~ 379 (383)
.+++++.++..||+.+.+|++++++++.+.|+|..+.+++.++..+.+
T Consensus 421 ~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e~fs~~~~~~ri~~~~~~~~ 469 (495)
T KOG0853|consen 421 AELADALLKLRRDPELWARMGKNGLKRVKEMFSWQHYSERIASVLGKYL 469 (495)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHhcC
Confidence 699999999999999999999999999999999999999998887654
No 77
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.90 E-value=6.1e-23 Score=188.28 Aligned_cols=302 Identities=15% Similarity=0.063 Sum_probs=186.3
Q ss_pred CCCCCChhHHHH---HHHHHHHhcccCCCceeeeecCCC---cccc--hhhcCCCh----------------hhhhHHHH
Q 043412 4 FLSGGGYSSESW---SYILALNEHVKNPRFKLAIEHHGD---LQSL--QFWEGLPH----------------HMRNLAVE 59 (383)
Q Consensus 4 ~~~~~G~~~~~~---~l~~~l~~~g~~~~~~~~~~~~~~---~~~~--~~~~~~~~----------------~~~~~~~~ 59 (383)
+++.||.+.+.. +++++|.++|+...+. ....+. .... -.+..++. .......+
T Consensus 4 ~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv--~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (348)
T TIGR01133 4 VLAAGGTGGHIFPALAVAEELIKRGVEVLWL--GTKRGLEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLLKAVFQ 81 (348)
T ss_pred EEEeCccHHHHhHHHHHHHHHHhCCCEEEEE--eCCCcchhcccccCCCceEEEeccCcCCCChHHHHHHHHHHHHHHHH
Confidence 467788888874 8999999999765432 221110 0000 00111110 11234456
Q ss_pred HHhhhcCCCccEEEecCCCCCCCCcccccCCCCCCCCCCCcccccceeeeecCCCCHHH-HHhcCCCCEEEEeChHHHHH
Q 043412 60 LYNTECRTNETVVICHSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETDRVSPEH-VKRCNRMDFVWVPTDFHVST 138 (383)
Q Consensus 60 l~~~~~~~~pDiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ad~vi~~s~~~~~~ 138 (383)
+.+++++++||+||+|+....+...........+. +.+... ...... ....+.+|.++++|+..++.
T Consensus 82 l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~-----v~~~~~-------~~~~~~~~~~~~~~d~ii~~~~~~~~~ 149 (348)
T TIGR01133 82 ARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPL-----FHHEQN-------AVPGLTNKLLSRFAKKVLISFPGAKDH 149 (348)
T ss_pred HHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCE-----EEECCC-------CCccHHHHHHHHHhCeeEECchhHhhc
Confidence 77888999999999996544332221111111111 110000 011111 22346799999999988765
Q ss_pred HHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHH-HHHHHHHHhc
Q 043412 139 FIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDV-LLKAYLEEFS 217 (383)
Q Consensus 139 ~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~-ll~a~~~l~~ 217 (383)
+ +..+++||++...+.+... ..+++ ++++.++++++|+....|+... +++++.++..
T Consensus 150 ~--------~~~~i~n~v~~~~~~~~~~-------~~~~~-------~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~ 207 (348)
T TIGR01133 150 F--------EAVLVGNPVRQEIRSLPVP-------RERFG-------LREGKPTILVLGGSQGAKILNELVPKALAKLAE 207 (348)
T ss_pred C--------CceEEcCCcCHHHhcccch-------hhhcC-------CCCCCeEEEEECCchhHHHHHHHHHHHHHHHhh
Confidence 5 3379999998765543211 11112 3467788999988777788654 5578877754
Q ss_pred cCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC-------CccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEc
Q 043412 218 KADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE-------KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIAT 290 (383)
Q Consensus 218 ~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 290 (383)
. ++++++++++ ...+.+++.++.+++. .++..+|+.||+++.++ | +++++|||++|+|+|++
T Consensus 208 ~--~~~~~~~~g~-----~~~~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~~v~~~---g-~~~l~Ea~~~g~Pvv~~ 276 (348)
T TIGR01133 208 K--GIQIVHQTGK-----NDLEKVKNVYQELGIEAIVTFIDENMAAAYAAADLVISRA---G-ASTVAELAAAGVPAILI 276 (348)
T ss_pred c--CcEEEEECCc-----chHHHHHHHHhhCCceEEecCcccCHHHHHHhCCEEEECC---C-hhHHHHHHHcCCCEEEe
Confidence 3 4555444433 1235666666665542 26788999999999865 2 68999999999999999
Q ss_pred CCCCc-------cccccC-CCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Q 043412 291 NWSGP-------TEYLTE-ENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRF 362 (383)
Q Consensus 291 ~~~g~-------~e~v~~-~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~ 362 (383)
+.++. .+++.+ ++|+++++.+ .++++++++|.++++|++.+++|++++++++ +..
T Consensus 277 ~~~~~~~~~~~~~~~i~~~~~G~~~~~~~----------------~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~ 339 (348)
T TIGR01133 277 PYPYAADDQYYNAKFLEDLGAGLVIRQKE----------------LLPEKLLEALLKLLLDPANLEAMAEAARKLA-KPD 339 (348)
T ss_pred eCCCCccchhhHHHHHHHCCCEEEEeccc----------------CCHHHHHHHHHHHHcCHHHHHHHHHHHHhcC-Ccc
Confidence 87542 234544 4666665440 0399999999999999999999999998753 445
Q ss_pred CHHHHHH
Q 043412 363 SPETVAG 369 (383)
Q Consensus 363 s~~~~~~ 369 (383)
..+++++
T Consensus 340 ~~~~i~~ 346 (348)
T TIGR01133 340 AAKRIAE 346 (348)
T ss_pred HHHHHHh
Confidence 5555443
No 78
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.90 E-value=1.6e-22 Score=185.70 Aligned_cols=253 Identities=14% Similarity=0.027 Sum_probs=163.6
Q ss_pred HHHHHhhhcCCCccEEEecCCCCCCCCcccccCCCCCCCCCCCcccccceeeeecCCCCHHHHHh-cCCCCEEEEeChHH
Q 043412 57 AVELYNTECRTNETVVICHSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETDRVSPEHVKR-CNRMDFVWVPTDFH 135 (383)
Q Consensus 57 ~~~l~~~~~~~~pDiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ad~vi~~s~~~ 135 (383)
...+.+++++++||+||+|+....+...........+. +.+.. ..+...+.+. ++.+|.++++|+..
T Consensus 78 ~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~-----v~~~~-------~~~~~~~~~~~~~~~~~vi~~s~~~ 145 (350)
T cd03785 78 VLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPL-----VIHEQ-------NAVPGLANRLLARFADRVALSFPET 145 (350)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCE-----EEEcC-------CCCccHHHHHHHHhhCEEEEcchhh
Confidence 34567788999999999997654332222111111111 11111 1111122222 45699999999988
Q ss_pred HHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHH-HHHHHHH
Q 043412 136 VSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDV-LLKAYLE 214 (383)
Q Consensus 136 ~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~-ll~a~~~ 214 (383)
++. .++.++.+++||+|.+.+.+... ..+.. .+++.+++++.|+....|+... +++++..
T Consensus 146 ~~~-----~~~~~~~~i~n~v~~~~~~~~~~-------~~~~~-------~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~ 206 (350)
T cd03785 146 AKY-----FPKDKAVVTGNPVREEILALDRE-------RARLG-------LRPGKPTLLVFGGSQGARAINEAVPEALAE 206 (350)
T ss_pred hhc-----CCCCcEEEECCCCchHHhhhhhh-------HHhcC-------CCCCCeEEEEECCcHhHHHHHHHHHHHHHH
Confidence 776 45679999999999876654211 11111 2456777777776666677654 5588877
Q ss_pred HhccCCCeEE-EEEeCCCCCCCchHHHHHHHHhhC-------CCCCccccccccCceEEecCCCCCCChHHHHHHHcCCC
Q 043412 215 EFSKADGVVL-YLLTNPYHSGRDFGNKIVNFVEDS-------DLEKPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLP 286 (383)
Q Consensus 215 l~~~~~~~~l-~i~G~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~P 286 (383)
+.+ +++++ +++|.+ ..+.+++.++++ +..+++..+|+.||+++.++- +++++|||++|+|
T Consensus 207 l~~--~~~~~~~i~G~g------~~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~v~~sg----~~t~~Eam~~G~P 274 (350)
T cd03785 207 LLR--KRLQVIHQTGKG------DLEEVKKAYEELGVNYEVFPFIDDMAAAYAAADLVISRAG----ASTVAELAALGLP 274 (350)
T ss_pred hhc--cCeEEEEEcCCc------cHHHHHHHHhccCCCeEEeehhhhHHHHHHhcCEEEECCC----HhHHHHHHHhCCC
Confidence 752 45664 456654 234455555432 223677899999999998662 6899999999999
Q ss_pred EEEcCCCCc--------ccccc-CCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 043412 287 VIATNWSGP--------TEYLT-EENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQARED 357 (383)
Q Consensus 287 vI~~~~~g~--------~e~v~-~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~ 357 (383)
+|+++.++. .+.+. .++|++++.+ ..|+++++++|.++++|++.+++|+++++++
T Consensus 275 vv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~----------------~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 338 (350)
T cd03785 275 AILIPLPYAADDHQTANARALVKAGAAVLIPQE----------------ELTPERLAAALLELLSDPERLKAMAEAARSL 338 (350)
T ss_pred EEEeecCCCCCCcHHHhHHHHHhCCCEEEEecC----------------CCCHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999876541 23333 3566666542 0179999999999999999999999999886
Q ss_pred HHhcCCHHHHHH
Q 043412 358 MIQRFSPETVAG 369 (383)
Q Consensus 358 ~~~~~s~~~~~~ 369 (383)
+ +.+.-+++++
T Consensus 339 ~-~~~~~~~i~~ 349 (350)
T cd03785 339 A-RPDAAERIAD 349 (350)
T ss_pred C-CCCHHHHHHh
Confidence 3 5666666553
No 79
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.90 E-value=1.2e-22 Score=188.26 Aligned_cols=274 Identities=14% Similarity=0.161 Sum_probs=178.2
Q ss_pred HHHHhhhcCCCccEEEecCCCCCCCCcccccCCCCCCCCCCCcccccceeeeecCCCCHHHHHhcCCCCEEEEeChHHHH
Q 043412 58 VELYNTECRTNETVVICHSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETDRVSPEHVKRCNRMDFVWVPTDFHVS 137 (383)
Q Consensus 58 ~~l~~~~~~~~pDiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~ 137 (383)
.++.+++++++||+||++.+.+.+ ..+.......+ +........ .....| ..+.+|.+++.|+..++
T Consensus 94 ~~l~~~l~~~kPDvVi~~~p~~~~--~~l~~~~~~~i---P~~~v~td~------~~~~~w--~~~~~d~~~v~s~~~~~ 160 (391)
T PRK13608 94 NKLINLLIKEKPDLILLTFPTPVM--SVLTEQFNINI---PVATVMTDY------RLHKNW--ITPYSTRYYVATKETKQ 160 (391)
T ss_pred HHHHHHHHHhCcCEEEECCcHHHH--HHHHHhcCCCC---CEEEEeCCC------Cccccc--ccCCCCEEEECCHHHHH
Confidence 567788899999999997543311 11111111111 111000000 011111 13679999999999999
Q ss_pred HHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCC-CcEEEEEeeccccccCHHHHHHHHHHHh
Q 043412 138 TFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSS-KEFVFLSVFKWEYRKGWDVLLKAYLEEF 216 (383)
Q Consensus 138 ~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~i~~~g~~~~~K~~~~ll~a~~~l~ 216 (383)
.+.+.|++++++.+++++++..+..+... ...+.++++ ++ ...++++.|++...|+++.+++++.
T Consensus 161 ~l~~~gi~~~ki~v~GiPv~~~f~~~~~~----~~~~~~~~l-------~~~~~~ilv~~G~lg~~k~~~~li~~~~--- 226 (391)
T PRK13608 161 DFIDVGIDPSTVKVTGIPIDNKFETPIDQ----KQWLIDNNL-------DPDKQTILMSAGAFGVSKGFDTMITDIL--- 226 (391)
T ss_pred HHHHcCCCHHHEEEECeecChHhcccccH----HHHHHHcCC-------CCCCCEEEEECCCcccchhHHHHHHHHH---
Confidence 99999998899999998887543222111 011112222 33 4456678899988899999999863
Q ss_pred ccCCCeEEEEEeCCCCCCCchHHHHHHHHh------hCCCCCccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEc
Q 043412 217 SKADGVVLYLLTNPYHSGRDFGNKIVNFVE------DSDLEKPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIAT 290 (383)
Q Consensus 217 ~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 290 (383)
+..+++++++++++. ....+.+.+... -.|..+++..+|+.||+++.. +.|+++.|||++|+|+|++
T Consensus 227 ~~~~~~~~vvv~G~~---~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~~aDl~I~k----~gg~tl~EA~a~G~PvI~~ 299 (391)
T PRK13608 227 AKSANAQVVMICGKS---KELKRSLTAKFKSNENVLILGYTKHMNEWMASSQLMITK----PGGITISEGLARCIPMIFL 299 (391)
T ss_pred hcCCCceEEEEcCCC---HHHHHHHHHHhccCCCeEEEeccchHHHHHHhhhEEEeC----CchHHHHHHHHhCCCEEEC
Confidence 234688887765431 123344443322 235567888999999999963 4689999999999999999
Q ss_pred CCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 043412 291 NWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGI 370 (383)
Q Consensus 291 ~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~ 370 (383)
+..+..|. .|+.++... +.|. ...|+++++++|.++++|++.+++|++++++. .+.++++.+++.
T Consensus 300 ~~~pgqe~---~N~~~~~~~---------G~g~--~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~-~~~~s~~~i~~~ 364 (391)
T PRK13608 300 NPAPGQEL---ENALYFEEK---------GFGK--IADTPEEAIKIVASLTNGNEQLTNMISTMEQD-KIKYATQTICRD 364 (391)
T ss_pred CCCCCcch---hHHHHHHhC---------CcEE--EeCCHHHHHHHHHHHhcCHHHHHHHHHHHHHh-cCCCCHHHHHHH
Confidence 64221111 233222211 1122 22399999999999999999999999999985 677999999999
Q ss_pred HHHHHHHHHh
Q 043412 371 VTDHIKDILS 380 (383)
Q Consensus 371 ~~~~~~~~~~ 380 (383)
+.+++.++.+
T Consensus 365 l~~l~~~~~~ 374 (391)
T PRK13608 365 LLDLIGHSSQ 374 (391)
T ss_pred HHHHhhhhhh
Confidence 9999877543
No 80
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.89 E-value=1.7e-23 Score=207.48 Aligned_cols=284 Identities=15% Similarity=0.132 Sum_probs=189.4
Q ss_pred ccEEEecCCCCCCCCcccccCCCCCCCCCCCcccccceeeeecCCCCHHHHHhcCCCCEEEEeChHHHHHHHh-----cC
Q 043412 69 ETVVICHSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETDRVSPEHVKRCNRMDFVWVPTDFHVSTFIR-----SG 143 (383)
Q Consensus 69 pDiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~-----~~ 143 (383)
-|+|.+|+.+....+..++........++.-....-...++..-++...+...+-.+|.|-..+....+.|.+ .+
T Consensus 134 ~d~vwvhDYhl~l~p~~lr~~~~~~~igfFlH~pfP~~~~f~~lp~~~~ll~~ll~~Dligf~t~~~~r~Fl~~~~~~l~ 213 (726)
T PRK14501 134 GDVVWVHDYQLMLLPAMLRERLPDARIGFFLHIPFPSFEVFRLLPWREEILEGLLGADLIGFHTYDYVRHFLSSVLRVLG 213 (726)
T ss_pred CCEEEEeCchhhhHHHHHHhhCCCCcEEEEeeCCCCChHHHhhCCChHHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHcC
Confidence 3899999876655555544332111101100000011112222335566667788999999999987776554 12
Q ss_pred C-----------CCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHH
Q 043412 144 V-----------DPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAY 212 (383)
Q Consensus 144 ~-----------~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~ 212 (383)
. ...++.++|+|||++.|.+.............+.- ..+++++|+++||+++.||+..+++|+
T Consensus 214 ~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~------~~~~~~~il~VgRl~~~Kgi~~~l~A~ 287 (726)
T PRK14501 214 YETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQ------DLRGRKIILSIDRLDYTKGIPRRLLAF 287 (726)
T ss_pred CccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcCchHHHHHHHHHH------HcCCCEEEEEecCcccccCHHHHHHHH
Confidence 1 12368899999999988765432111000000000 024578999999999999999999999
Q ss_pred HHHhccCCC----eEEEEEeCCCCCCCc----hHHHHHHHHhhCC-------C-----------CCccccccccCceEEe
Q 043412 213 LEEFSKADG----VVLYLLTNPYHSGRD----FGNKIVNFVEDSD-------L-----------EKPDDGWAPAADVFVL 266 (383)
Q Consensus 213 ~~l~~~~~~----~~l~i~G~~~~~~~~----~~~~~~~~~~~~~-------~-----------~~~v~~~~~~adi~v~ 266 (383)
.++.+++|+ ++|+++|.+.....+ +..++.+++...+ . .+++..+|+.||++++
T Consensus 288 ~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~ 367 (726)
T PRK14501 288 ERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALV 367 (726)
T ss_pred HHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhccEEEe
Confidence 999888886 689888754322212 2333334332211 0 1556789999999999
Q ss_pred cCCCCCCChHHHHHHHcC-----CCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHh
Q 043412 267 PSRGEGWGRPLVEAMSMG-----LPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVV 341 (383)
Q Consensus 267 ps~~e~~~~~~~Ea~a~G-----~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll 341 (383)
||..||+|++++|||+|| +||++...|+..++. .|+++++. |+++++++|.+++
T Consensus 368 ~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~---~~llv~P~------------------d~~~la~ai~~~l 426 (726)
T PRK14501 368 TPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAELA---EALLVNPN------------------DIEGIAAAIKRAL 426 (726)
T ss_pred cccccccCcccceEEEEcCCCCceEEEecccchhHHhC---cCeEECCC------------------CHHHHHHHHHHHH
Confidence 999999999999999994 566666667777764 36777766 9999999999999
Q ss_pred cCH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 043412 342 SNV-DEAKAKGKQAREDMIQRFSPETVAGIVTDHIKDILS 380 (383)
Q Consensus 342 ~~~-~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~~~ 380 (383)
+++ +.+....+++++.+ .+|||+.+++++.+.|+++..
T Consensus 427 ~~~~~e~~~r~~~~~~~v-~~~~~~~w~~~~l~~l~~~~~ 465 (726)
T PRK14501 427 EMPEEEQRERMQAMQERL-RRYDVHKWASDFLDELREAAE 465 (726)
T ss_pred cCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHh
Confidence 854 45555556788875 689999999999999988743
No 81
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.88 E-value=2.7e-22 Score=185.21 Aligned_cols=216 Identities=15% Similarity=0.076 Sum_probs=149.1
Q ss_pred HHHhcCCCCEEEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEee
Q 043412 118 HVKRCNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVF 197 (383)
Q Consensus 118 ~~~~~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g 197 (383)
....+++||.|+++|+..++.+.+++ .++.+||||+|.+.|.+....... . +.. ...++++++|+|
T Consensus 147 e~~~~~~ad~vi~~S~~l~~~~~~~~---~~i~~i~ngvd~~~f~~~~~~~~~-~---~~~-------~~~~~~~i~y~G 212 (373)
T cd04950 147 ERRLLKRADLVFTTSPSLYEAKRRLN---PNVVLVPNGVDYEHFAAARDPPPP-P---ADL-------AALPRPVIGYYG 212 (373)
T ss_pred HHHHHHhCCEEEECCHHHHHHHhhCC---CCEEEcccccCHHHhhcccccCCC-h---hHH-------hcCCCCEEEEEe
Confidence 34457999999999999999888876 489999999999888764432110 0 000 024578999999
Q ss_pred ccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHH--HHHhhCCCC--CccccccccCceEEecCCC---
Q 043412 198 KWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIV--NFVEDSDLE--KPDDGWAPAADVFVLPSRG--- 270 (383)
Q Consensus 198 ~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~--~~~~~~~~~--~~v~~~~~~adi~v~ps~~--- 270 (383)
++.+.++++.+.++++ ..|+++|+++|++... .....+. .-+..+|.. +++..+++.+|++++|+..
T Consensus 213 ~l~~~~d~~ll~~la~----~~p~~~~vliG~~~~~--~~~~~~~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~ 286 (373)
T cd04950 213 AIAEWLDLELLEALAK----ARPDWSFVLIGPVDVS--IDPSALLRLPNVHYLGPKPYKELPAYLAGFDVAILPFRLNEL 286 (373)
T ss_pred ccccccCHHHHHHHHH----HCCCCEEEEECCCcCc--cChhHhccCCCEEEeCCCCHHHHHHHHHhCCEEecCCccchh
Confidence 9998888776655443 4689999999987211 1111111 112223433 5788999999999999853
Q ss_pred --CCCChHHHHHHHcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHH
Q 043412 271 --EGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAK 348 (383)
Q Consensus 271 --e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~ 348 (383)
+++|++++||||||+|||+|+.+.. .....+..+..+ |+++++++|.+++.++....
T Consensus 287 ~~~~~P~Kl~EylA~G~PVVat~~~~~---~~~~~~~~~~~~------------------d~~~~~~ai~~~l~~~~~~~ 345 (373)
T cd04950 287 TRATSPLKLFEYLAAGKPVVATPLPEV---RRYEDEVVLIAD------------------DPEEFVAAIEKALLEDGPAR 345 (373)
T ss_pred hhcCCcchHHHHhccCCCEEecCcHHH---HhhcCcEEEeCC------------------CHHHHHHHHHHHHhcCCchH
Confidence 4689999999999999999986544 333323333323 89999999999765432211
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 043412 349 AKGKQAREDMIQRFSPETVAGIVTDHIKD 377 (383)
Q Consensus 349 ~~~~~a~~~~~~~~s~~~~~~~~~~~~~~ 377 (383)
.. ++++ +.+.|||+..++++.+.+++
T Consensus 346 ~~--~~~~-~~~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 346 ER--RRLR-LAAQNSWDARAAEMLEALQE 371 (373)
T ss_pred HH--HHHH-HHHHCCHHHHHHHHHHHHHh
Confidence 11 2222 57789999999999966654
No 82
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.86 E-value=2.3e-20 Score=173.24 Aligned_cols=338 Identities=16% Similarity=0.081 Sum_probs=193.6
Q ss_pred CCCCCChhHHH---HHHHHHHHhcccCCCceeeeecCCCcccchh-----hc-----CCC------hhhhhHHHHHHhhh
Q 043412 4 FLSGGGYSSES---WSYILALNEHVKNPRFKLAIEHHGDLQSLQF-----WE-----GLP------HHMRNLAVELYNTE 64 (383)
Q Consensus 4 ~~~~~G~~~~~---~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~-----~~-----~~~------~~~~~~~~~l~~~~ 64 (383)
+++.||.+-+. . ++++|++.+....+. .+... ..+.... .. ++. ........++.+++
T Consensus 5 ~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~l 81 (380)
T PRK00025 5 AIVAGEVSGDLLGAG-LIRALKARAPNLEFV-GVGGP-RMQAAGCESLFDMEELAVMGLVEVLPRLPRLLKIRRRLKRRL 81 (380)
T ss_pred EEEecCcCHHHHHHH-HHHHHHhcCCCcEEE-EEccH-HHHhCCCccccCHHHhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777765 6 999999876544432 22211 1111100 00 110 01234556778888
Q ss_pred cCCCccEEEecCCCCCCCCcc-cccCCCCCCCCCCCcccccceeeeecCCCCHHHHHhcCCCCEEEEeChHHHHHHHhcC
Q 043412 65 CRTNETVVICHSEPGAWYPPL-FDTLPCPPTPGYGDFMAVIGRTMFETDRVSPEHVKRCNRMDFVWVPTDFHVSTFIRSG 143 (383)
Q Consensus 65 ~~~~pDiV~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~~ 143 (383)
++++||+||++...+.|.... .......++ +.+..+ ..|. .......+..+.+|.+++.|+..++.+.+.|
T Consensus 82 ~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~-----i~~~~~-~~~~--~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~g 153 (380)
T PRK00025 82 LAEPPDVFIGIDAPDFNLRLEKKLRKAGIPT-----IHYVSP-SVWA--WRQGRAFKIAKATDHVLALFPFEAAFYDKLG 153 (380)
T ss_pred HHcCCCEEEEeCCCCCCHHHHHHHHHCCCCE-----EEEeCC-chhh--cCchHHHHHHHHHhhheeCCccCHHHHHhcC
Confidence 999999999986433332111 111111111 111111 1111 1122233346789999999999999998877
Q ss_pred CCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEE-EEEee-ccccc-cCHHHHHHHHHHHhccCC
Q 043412 144 VDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFV-FLSVF-KWEYR-KGWDVLLKAYLEEFSKAD 220 (383)
Q Consensus 144 ~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-i~~~g-~~~~~-K~~~~ll~a~~~l~~~~~ 220 (383)
. ++.+++|++.......... ...+.+++ ++++.++ +++.| +..+. +..+.+++++..+.++.|
T Consensus 154 ~---~~~~~G~p~~~~~~~~~~~----~~~~~~l~-------~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~ 219 (380)
T PRK00025 154 V---PVTFVGHPLADAIPLLPDR----AAARARLG-------LDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYP 219 (380)
T ss_pred C---CeEEECcCHHHhcccccCh----HHHHHHcC-------CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5 3777777764322111110 01111222 3444544 45555 33333 457889999999988888
Q ss_pred CeEEEEEeCCCCCCCchHHHHHHHHhhC-CCC-----CccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCC-C
Q 043412 221 GVVLYLLTNPYHSGRDFGNKIVNFVEDS-DLE-----KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNW-S 293 (383)
Q Consensus 221 ~~~l~i~G~~~~~~~~~~~~~~~~~~~~-~~~-----~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~-~ 293 (383)
+++++++|++ .+..+.+++.+... ++. +++..+|+.||+++.+| |.+.+|||++|+|+|++.. +
T Consensus 220 ~~~~ii~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~aDl~v~~s-----G~~~lEa~a~G~PvI~~~~~~ 290 (380)
T PRK00025 220 DLRFVLPLVN----PKRREQIEEALAEYAGLEVTLLDGQKREAMAAADAALAAS-----GTVTLELALLKVPMVVGYKVS 290 (380)
T ss_pred CeEEEEecCC----hhhHHHHHHHHhhcCCCCeEEEcccHHHHHHhCCEEEECc-----cHHHHHHHHhCCCEEEEEccC
Confidence 9999999863 14456666666655 442 56789999999999987 7888899999999998722 2
Q ss_pred CccccccC---CCceeeecccccccccCC--CCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHH
Q 043412 294 GPTEYLTE---ENGYPLLVGRMSEVTEGP--FKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVA 368 (383)
Q Consensus 294 g~~e~v~~---~~g~~~~~~~~~~~~~~~--~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~ 368 (383)
..+..+.+ .+.+ ..++++..+. ..+++.+..|++++++++.++++|++.+++|++++.+.. +.. ....+
T Consensus 291 ~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~-~~~a~ 364 (380)
T PRK00025 291 PLTFWIAKRLVKVPY----VSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGARRQALLEGFTELH-QQL-RCGAD 364 (380)
T ss_pred HHHHHHHHHHHcCCe----eehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHh-CCCHH
Confidence 22211111 0100 0012222222 233444555999999999999999999999999876533 222 22345
Q ss_pred HHHHHHHHHHHhc
Q 043412 369 GIVTDHIKDILSS 381 (383)
Q Consensus 369 ~~~~~~~~~~~~~ 381 (383)
+++.+.+.+++.+
T Consensus 365 ~~~~~~i~~~~~~ 377 (380)
T PRK00025 365 ERAAQAVLELLKQ 377 (380)
T ss_pred HHHHHHHHHHhhh
Confidence 5665665555443
No 83
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.83 E-value=9.6e-20 Score=169.10 Aligned_cols=279 Identities=13% Similarity=0.072 Sum_probs=190.3
Q ss_pred ccEEEecCCCCCCCCcccccCCCCCCCCCCCcccccceeeeecCCCCHHHHHhcCCCCEEEEeChHHHHHHHh-----cC
Q 043412 69 ETVVICHSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETDRVSPEHVKRCNRMDFVWVPTDFHVSTFIR-----SG 143 (383)
Q Consensus 69 pDiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~-----~~ 143 (383)
-|+|-+|+.+....+..+.........++.-....-...++..-++...+.+.+-.+|.|-..+...++.|.+ .|
T Consensus 133 ~d~vWVhDYhL~llp~~LR~~~~~~~IgfFlHiPFPs~eifr~LP~r~~ll~glL~aDliGFqt~~y~~~Fl~~~~r~lg 212 (487)
T TIGR02398 133 GATVWVHDYNLWLVPGYIRQLRPDLKIAFFHHTPFPSADVFNILPWREQIIGSLLCCDYIGFHIPRYVENFVDAARGLMP 212 (487)
T ss_pred CCEEEEecchhhHHHHHHHHhCCCCeEEEEeeCCCCChHHHhhCCchHHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHhC
Confidence 3799999766555554444332111101100001111223333445666777789999999999998887654 12
Q ss_pred CC--------------------------------CCCeEEecCCCcCCCCCCCCCCCCccc--cCCccccccCCCCCCCC
Q 043412 144 VD--------------------------------PAKVVKIVQPVHVGFFDPVNCDPIDLA--SIGKPVLGLSNMNTSSK 189 (383)
Q Consensus 144 ~~--------------------------------~~~i~vi~ngid~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~ 189 (383)
.. .-++.++|.|||++.|.+......... ..-+..+ .+
T Consensus 213 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~PiGID~~~f~~~~~~~~~~~~~~~lr~~~--------~~ 284 (487)
T TIGR02398 213 LQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVGTDPERIRSALAAASIREMMERIRSEL--------AG 284 (487)
T ss_pred CccccccccccccccccccccccccccceeECCEEEEEEEEECEecHHHHHHHhcCchHHHHHHHHHHHc--------CC
Confidence 11 112688999999998865433221110 0011112 25
Q ss_pred cEEEEEeeccccccCHHHHHHHHHHHhccCCC----eEEEEEeCCCCCCCc----hHHHHHHHHhhC-------CCC---
Q 043412 190 EFVFLSVFKWEYRKGWDVLLKAYLEEFSKADG----VVLYLLTNPYHSGRD----FGNKIVNFVEDS-------DLE--- 251 (383)
Q Consensus 190 ~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~----~~l~i~G~~~~~~~~----~~~~~~~~~~~~-------~~~--- 251 (383)
+.+|++++|++..||+...++|+.++++++|+ +.|+.+|.+...+.+ +..++++++... +..
T Consensus 285 ~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~ 364 (487)
T TIGR02398 285 VKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQ 364 (487)
T ss_pred ceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEE
Confidence 78999999999999999999999999999996 789999887543322 334455555443 221
Q ss_pred --------CccccccccCceEEecCCCCCCChHHHHHHHcCC----CEEEcCCCCccccccCCCceeeecccccccccCC
Q 043412 252 --------KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGL----PVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGP 319 (383)
Q Consensus 252 --------~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~----PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~ 319 (383)
+++..+|+.||+++.||..||++++..|+++|+. |+|.|..+|..+.+. .+++|+|.
T Consensus 365 ~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaGaa~~l~--~AllVNP~--------- 433 (487)
T TIGR02398 365 FFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGAAVELK--GALLTNPY--------- 433 (487)
T ss_pred EEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEEeccccchhhcC--CCEEECCC---------
Confidence 4456899999999999999999999999999988 999999998886662 45666655
Q ss_pred CCcccccCCCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043412 320 FKGHFWAEPSVDKLRALMRLVVSNV-DEAKAKGKQAREDMIQRFSPETVAGIVTDHIK 376 (383)
Q Consensus 320 ~~g~~~~~~~~~~la~~i~~ll~~~-~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~ 376 (383)
|++++|++|.++++.| +++++.-+..++. ...++...+++.+.+-++
T Consensus 434 ---------d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~-v~~~d~~~W~~~fl~~l~ 481 (487)
T TIGR02398 434 ---------DPVRMDETIYVALAMPKAEQQARMREMFDA-VNYYDVQRWADEFLAAVS 481 (487)
T ss_pred ---------CHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhhCCHHHHHHHHHHHhh
Confidence 9999999999999965 4454444555554 567899999998886654
No 84
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.83 E-value=3.3e-20 Score=171.08 Aligned_cols=255 Identities=13% Similarity=0.097 Sum_probs=160.5
Q ss_pred hhHHHHHHhhhcCCCccEEEecCCCCCCC-CcccccCCCCCCCCCCCccccccee--eeecCCCCHHHHHh-c-CCCCEE
Q 043412 54 RNLAVELYNTECRTNETVVICHSEPGAWY-PPLFDTLPCPPTPGYGDFMAVIGRT--MFETDRVSPEHVKR-C-NRMDFV 128 (383)
Q Consensus 54 ~~~~~~l~~~~~~~~pDiV~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~-~~ad~v 128 (383)
...+..+.+++++++||+||+|......+ ....+.....++ . +..+.. ......++..+.+. + +.+|.+
T Consensus 72 ~~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv-----~-h~~~g~~s~~~~~~~~~~~~r~~~~~~ad~~ 145 (365)
T TIGR00236 72 SNMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPV-----G-HVEAGLRTGDRYSPMPEEINRQLTGHIADLH 145 (365)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCE-----E-EEeCCCCcCCCCCCCccHHHHHHHHHHHHhc
Confidence 34457788899999999999996533211 111111111111 1 111100 00001123333232 2 358999
Q ss_pred EEeChHHHHHHHhcCCCCCCeEEecCCC-cCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeecc-ccccCHH
Q 043412 129 WVPTDFHVSTFIRSGVDPAKVVKIVQPV-HVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKW-EYRKGWD 206 (383)
Q Consensus 129 i~~s~~~~~~~~~~~~~~~~i~vi~ngi-d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~-~~~K~~~ 206 (383)
+++|+..++.+.+.|.+++++.+++|++ |........... .....+++ .++.++++..++. ...|+++
T Consensus 146 ~~~s~~~~~~l~~~G~~~~~I~vign~~~d~~~~~~~~~~~--~~~~~~~~--------~~~~~vl~~~hr~~~~~k~~~ 215 (365)
T TIGR00236 146 FAPTEQAKDNLLRENVKADSIFVTGNTVIDALLTNVEIAYS--SPVLSEFG--------EDKRYILLTLHRRENVGEPLE 215 (365)
T ss_pred cCCCHHHHHHHHHcCCCcccEEEeCChHHHHHHHHHhhccc--hhHHHhcC--------CCCCEEEEecCchhhhhhHHH
Confidence 9999999999999999999999999996 432211111100 00011111 1234444444454 2458999
Q ss_pred HHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCCC-----------ccccccccCceEEecCCCCCCCh
Q 043412 207 VLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLEK-----------PDDGWAPAADVFVLPSRGEGWGR 275 (383)
Q Consensus 207 ~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~adi~v~ps~~e~~~~ 275 (383)
.+++|+.++.++.|++++++.|.+. ......+.+. ++..+ ++..+++.+|+++.+| |.
T Consensus 216 ~ll~a~~~l~~~~~~~~~vi~~~~~---~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S-----g~ 284 (365)
T TIGR00236 216 NIFKAIREIVEEFEDVQIVYPVHLN---PVVREPLHKH---LGDSKRVHLIEPLEYLDFLNLAANSHLILTDS-----GG 284 (365)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCC---hHHHHHHHHH---hCCCCCEEEECCCChHHHHHHHHhCCEEEECC-----hh
Confidence 9999999988778899999886542 1222223222 22222 2336679999999887 45
Q ss_pred HHHHHHHcCCCEEEc-CCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 043412 276 PLVEAMSMGLPVIAT-NWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQA 354 (383)
Q Consensus 276 ~~~Ea~a~G~PvI~~-~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a 354 (383)
.++|||+||+|||++ +.++..+.+..+++.+++ . |++++++++.++++|++.+++|+.+.
T Consensus 285 ~~~EA~a~g~PvI~~~~~~~~~e~~~~g~~~lv~-~------------------d~~~i~~ai~~ll~~~~~~~~~~~~~ 345 (365)
T TIGR00236 285 VQEEAPSLGKPVLVLRDTTERPETVEAGTNKLVG-T------------------DKENITKAAKRLLTDPDEYKKMSNAS 345 (365)
T ss_pred HHHHHHHcCCCEEECCCCCCChHHHhcCceEEeC-C------------------CHHHHHHHHHHHHhChHHHHHhhhcC
Confidence 689999999999996 567788888776666553 2 89999999999999999888887664
No 85
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.80 E-value=1.6e-17 Score=151.58 Aligned_cols=217 Identities=26% Similarity=0.356 Sum_probs=172.5
Q ss_pred CCCEEEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCC--cEEEEEeecccc
Q 043412 124 RMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSK--EFVFLSVFKWEY 201 (383)
Q Consensus 124 ~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~i~~~g~~~~ 201 (383)
.++.++..+......+...... .++.+++++++...+.+.... ..++ ...++++|++.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~~g~~~~ 210 (381)
T COG0438 150 LADRVIAVSPALKELLEALGVP-NKIVVIPNGIDTEKFAPARIG------------------LLPEGGKFVVLYVGRLDP 210 (381)
T ss_pred cccEEEECCHHHHHHHHHhCCC-CCceEecCCcCHHHcCccccC------------------CCcccCceEEEEeeccCh
Confidence 4888999999887777665443 378999999998877653111 0122 378999999999
Q ss_pred ccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC-----------CccccccccCceEEecCCC
Q 043412 202 RKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE-----------KPDDGWAPAADVFVLPSRG 270 (383)
Q Consensus 202 ~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~-----------~~v~~~~~~adi~v~ps~~ 270 (383)
.||++.+++++..+....+++.+.++|.+... .+.+...+...+.. +++..+++.+|++++||..
T Consensus 211 ~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~ 286 (381)
T COG0438 211 EKGLDLLIEAAAKLKKRGPDIKLVIVGDGPER----REELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSLS 286 (381)
T ss_pred hcCHHHHHHHHHHhhhhcCCeEEEEEcCCCcc----HHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEecccc
Confidence 99999999999999887777999999998432 33444444444332 2455677889999999999
Q ss_pred CCCChHHHHHHHcCCCEEEcCCCCccccccCC-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHH
Q 043412 271 EGWGRPLVEAMSMGLPVIATNWSGPTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKA 349 (383)
Q Consensus 271 e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~ 349 (383)
|++|++++|||++|+|||+++.++..+++.++ +|++++.. +.+++++++..++++++.++.
T Consensus 287 e~~~~~~~Ea~a~g~pvi~~~~~~~~e~~~~~~~g~~~~~~------------------~~~~~~~~i~~~~~~~~~~~~ 348 (381)
T COG0438 287 EGFGLVLLEAMAAGTPVIASDVGGIPEVVEDGETGLLVPPG------------------DVEELADALEQLLEDPELREE 348 (381)
T ss_pred ccchHHHHHHHhcCCcEEECCCCChHHHhcCCCceEecCCC------------------CHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999999999999999999999886 47655443 799999999999999987888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 043412 350 KGKQAREDMIQRFSPETVAGIVTDHIKDILSS 381 (383)
Q Consensus 350 ~~~~a~~~~~~~~s~~~~~~~~~~~~~~~~~~ 381 (383)
+.+++++.+.+.|+|+..++++.+++......
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (381)
T COG0438 349 LGEAARERVEEEFSWERIAEQLLELYEELLAE 380 (381)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 88766666668999999999999999887653
No 86
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.80 E-value=1.5e-18 Score=148.86 Aligned_cols=108 Identities=32% Similarity=0.398 Sum_probs=86.8
Q ss_pred EeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCC------------CCccccccccCc
Q 043412 195 SVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDL------------EKPDDGWAPAAD 262 (383)
Q Consensus 195 ~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~~~~ad 262 (383)
++|++.+.||++.+++++..+.++.++++++++|.+.. .......+...+. .+.+..+++.||
T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~d 183 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAFALLKERGPDLKLVIAGDGPE-----REYLEELLAALLLLDRVIFLGGLDPEELLALLLAAAD 183 (229)
T ss_pred EEEeecccCCHHHHHHHHHHHHHhCCCeEEEEEeCCCC-----hHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCC
Confidence 88899999999999999999998889999999998732 2222221222222 234456667799
Q ss_pred eEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccC-CCceee
Q 043412 263 VFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTE-ENGYPL 307 (383)
Q Consensus 263 i~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~-~~g~~~ 307 (383)
++++||..|++|++++|||++|+|+|+|+.++..|++.+ ++|+++
T Consensus 184 i~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~e~i~~~~~g~~~ 229 (229)
T cd01635 184 VFVLPSLREGFGLVVLEAMACGLPVIATDVGGPPEIVEDGLTGLLV 229 (229)
T ss_pred EEEecccccCcChHHHHHHhCCCCEEEcCCCCcceEEECCCceEEC
Confidence 999999999999999999999999999999999998876 477653
No 87
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.79 E-value=2.7e-18 Score=155.78 Aligned_cols=252 Identities=11% Similarity=0.014 Sum_probs=156.2
Q ss_pred HHHHHhhhcCCCc-cEEEecCCCCCCC---Cccc---ccCCCCCCCCCCCcccccceeeeecCCCCHHHHHhcCCCCEEE
Q 043412 57 AVELYNTECRTNE-TVVICHSEPGAWY---PPLF---DTLPCPPTPGYGDFMAVIGRTMFETDRVSPEHVKRCNRMDFVW 129 (383)
Q Consensus 57 ~~~l~~~~~~~~p-DiV~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi 129 (383)
...+.+++.+.++ |+||.+++..... ..++ .....+.+..+++..... ..............+++||.++
T Consensus 52 ~~~~~~~~~~~~~~Dvv~~~~P~~~~~~~~~~~~~~~k~~~~k~i~~ihD~~~~~---~~~~~~~~~~~~~~~~~aD~iI 128 (333)
T PRK09814 52 SKRLDGILASLKPGDIVIFQFPTWNGFEFDRLFVDKLKKKQVKIIILIHDIEPLR---FDSNYYLMKEEIDMLNLADVLI 128 (333)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHHHcCCEEEEEECCcHHHh---ccccchhhHHHHHHHHhCCEEE
Confidence 3445556777888 9999998543210 1111 111122332223322110 0011111233445589999999
Q ss_pred EeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHH
Q 043412 130 VPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLL 209 (383)
Q Consensus 130 ~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll 209 (383)
++|+.+++.+.+.|+++.++.++++..+.....+... .+..+.++|+|++...+. +
T Consensus 129 ~~S~~~~~~l~~~g~~~~~i~~~~~~~~~~~~~~~~~--------------------~~~~~~i~yaG~l~k~~~----l 184 (333)
T PRK09814 129 VHSKKMKDRLVEEGLTTDKIIVQGIFDYLNDIELVKT--------------------PSFQKKINFAGNLEKSPF----L 184 (333)
T ss_pred ECCHHHHHHHHHcCCCcCceEeccccccccccccccc--------------------ccCCceEEEecChhhchH----H
Confidence 9999999999999887778888776543321111000 123568999999984321 1
Q ss_pred HHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC--CccccccccCceEEecCC-----------CCCCChH
Q 043412 210 KAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE--KPDDGWAPAADVFVLPSR-----------GEGWGRP 276 (383)
Q Consensus 210 ~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~adi~v~ps~-----------~e~~~~~ 276 (383)
. ...++++|+++|+|+... .....+...|.. +++..+++. |+.+.+.. .-.+|.+
T Consensus 185 ~------~~~~~~~l~i~G~g~~~~-----~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K 252 (333)
T PRK09814 185 K------NWSQGIKLTVFGPNPEDL-----ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHK 252 (333)
T ss_pred H------hcCCCCeEEEECCCcccc-----ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHH
Confidence 1 134689999999985321 111122223332 455566666 54443321 2367889
Q ss_pred HHHHHHcCCCEEEcCCCCccccccCC-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 043412 277 LVEAMSMGLPVIATNWSGPTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAR 355 (383)
Q Consensus 277 ~~Ea~a~G~PvI~~~~~g~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~ 355 (383)
+.|+||||+|||+++.++..+++.++ +|++++ +.+++++++..+ +++.+.+|+++++
T Consensus 253 ~~~ymA~G~PVI~~~~~~~~~~V~~~~~G~~v~--------------------~~~el~~~l~~~--~~~~~~~m~~n~~ 310 (333)
T PRK09814 253 LSLYLAAGLPVIVWSKAAIADFIVENGLGFVVD--------------------SLEELPEIIDNI--TEEEYQEMVENVK 310 (333)
T ss_pred HHHHHHCCCCEEECCCccHHHHHHhCCceEEeC--------------------CHHHHHHHHHhc--CHHHHHHHHHHHH
Confidence 99999999999999999999999885 888887 788999999985 4577899999998
Q ss_pred HHHHhcCCHHHHHHH
Q 043412 356 EDMIQRFSPETVAGI 370 (383)
Q Consensus 356 ~~~~~~~s~~~~~~~ 370 (383)
+. .+.+.-...+++
T Consensus 311 ~~-~~~~~~g~~~~~ 324 (333)
T PRK09814 311 KI-SKLLRNGYFTKK 324 (333)
T ss_pred HH-HHHHhcchhHHH
Confidence 85 455544444333
No 88
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.79 E-value=4.8e-19 Score=163.42 Aligned_cols=269 Identities=13% Similarity=0.073 Sum_probs=164.5
Q ss_pred hhHHHHHHhhhcCCCccEEEecCCCCCCC-CcccccCCCCCCCCCCCcccccceeeeecCCCCHHHH-HhcCCCCEEEEe
Q 043412 54 RNLAVELYNTECRTNETVVICHSEPGAWY-PPLFDTLPCPPTPGYGDFMAVIGRTMFETDRVSPEHV-KRCNRMDFVWVP 131 (383)
Q Consensus 54 ~~~~~~l~~~~~~~~pDiV~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ad~vi~~ 131 (383)
......+.+.+++.+||+||+|....... ....+.....++ .....|...|.......... ...+.+|.++++
T Consensus 74 ~~~~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~iPv-----v~~~~g~~s~~~~~~~~~~r~~~~~~ad~~~~~ 148 (363)
T cd03786 74 AGLLIGLEAVLLEEKPDLVLVLGDTNETLAAALAAFKLGIPV-----AHVEAGLRSFDRGMPDEENRHAIDKLSDLHFAP 148 (363)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcCCCE-----EEEecccccCCCCCCchHHHHHHHHHhhhccCC
Confidence 33557777888888999999996432211 111111111111 11111111110011111111 124678999999
Q ss_pred ChHHHHHHHhcCCCCCCeEEecCCC-cCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeecccc---ccCHHH
Q 043412 132 TDFHVSTFIRSGVDPAKVVKIVQPV-HVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEY---RKGWDV 207 (383)
Q Consensus 132 s~~~~~~~~~~~~~~~~i~vi~ngi-d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~---~K~~~~ 207 (383)
|+..++.+.+.|++++++.+++|++ |...+.+...... ..+...+ ++++.+++++.|+... .|+++.
T Consensus 149 s~~~~~~l~~~G~~~~kI~vign~v~d~~~~~~~~~~~~--~~~~~~~-------~~~~~~vlv~~~r~~~~~~~k~~~~ 219 (363)
T cd03786 149 TEEARRNLLQEGEPPERIFVVGNTMIDALLRLLELAKKE--LILELLG-------LLPKKYILVTLHRVENVDDGEQLEE 219 (363)
T ss_pred CHHHHHHHHHcCCCcccEEEECchHHHHHHHHHHhhccc--hhhhhcc-------cCCCCEEEEEeCCccccCChHHHHH
Confidence 9999999999999999999999985 5432221111100 0011122 2456677888888764 799999
Q ss_pred HHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCC-C-----------CccccccccCceEEecCCCCCCCh
Q 043412 208 LLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDL-E-----------KPDDGWAPAADVFVLPSRGEGWGR 275 (383)
Q Consensus 208 ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~-~-----------~~v~~~~~~adi~v~ps~~e~~~~ 275 (383)
++++++++... ++.+++.|.+ .....+++.+..++. . +++..+|+.||++|.+|. |
T Consensus 220 l~~al~~l~~~--~~~vi~~~~~-----~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg----g- 287 (363)
T cd03786 220 ILEALAELAEE--DVPVVFPNHP-----RTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG----G- 287 (363)
T ss_pred HHHHHHHHHhc--CCEEEEECCC-----ChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc----c-
Confidence 99999988543 5676666654 345566666555432 1 345577899999999984 3
Q ss_pred HHHHHHHcCCCEEEcCC-CCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 043412 276 PLVEAMSMGLPVIATNW-SGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQA 354 (383)
Q Consensus 276 ~~~Ea~a~G~PvI~~~~-~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a 354 (383)
...|||++|+|+|+++. +...+.++.+.+..+. .|+++++++|.++++++..+..|.
T Consensus 288 i~~Ea~~~g~PvI~~~~~~~~~~~~~~g~~~~~~-------------------~~~~~i~~~i~~ll~~~~~~~~~~--- 345 (363)
T cd03786 288 IQEEASFLGVPVLNLRDRTERPETVESGTNVLVG-------------------TDPEAILAAIEKLLSDEFAYSLMS--- 345 (363)
T ss_pred HHhhhhhcCCCEEeeCCCCccchhhheeeEEecC-------------------CCHHHHHHHHHHHhcCchhhhcCC---
Confidence 47899999999999975 3355555444332222 169999999999999988776663
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 043412 355 REDMIQRFSPETVAGIVTDH 374 (383)
Q Consensus 355 ~~~~~~~~s~~~~~~~~~~~ 374 (383)
...|.-...++++.++
T Consensus 346 ----~~~~~~~~a~~~I~~~ 361 (363)
T cd03786 346 ----INPYGDGNASERIVEI 361 (363)
T ss_pred ----CCCCCCCHHHHHHHHH
Confidence 2334444445555444
No 89
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.76 E-value=4.5e-17 Score=138.71 Aligned_cols=217 Identities=16% Similarity=0.176 Sum_probs=171.8
Q ss_pred CCCCEEEEeChHHHHHHHh-cCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeecccc
Q 043412 123 NRMDFVWVPTDFHVSTFIR-SGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEY 201 (383)
Q Consensus 123 ~~ad~vi~~s~~~~~~~~~-~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~ 201 (383)
..||.+.+.|.++.+.+.+ .+. .++.+++.+.+++......... ..+.+.++++|.+.|
T Consensus 221 ~~ad~vm~NssWT~nHI~qiW~~--~~~~iVyPPC~~e~lks~~~te------------------~~r~~~ll~l~Q~RP 280 (465)
T KOG1387|consen 221 SKADIVMTNSSWTNNHIKQIWQS--NTCSIVYPPCSTEDLKSKFGTE------------------GERENQLLSLAQFRP 280 (465)
T ss_pred ccceEEEecchhhHHHHHHHhhc--cceeEEcCCCCHHHHHHHhccc------------------CCcceEEEEEeecCc
Confidence 7799999999999999998 443 5889999998887443322210 245788999999999
Q ss_pred ccCHHHHHHHHHHHhcc------CCCeEEEEEeCCCC-CCCchHHHHHHHHhhCCCCCc-----------cccccccCce
Q 043412 202 RKGWDVLLKAYLEEFSK------ADGVVLYLLTNPYH-SGRDFGNKIVNFVEDSDLEKP-----------DDGWAPAADV 263 (383)
Q Consensus 202 ~K~~~~ll~a~~~l~~~------~~~~~l~i~G~~~~-~~~~~~~~~~~~~~~~~~~~~-----------v~~~~~~adi 263 (383)
.|+.. +++.+.....+ .++++|+++|+-.. ++.++...++++++++.++++ +..++..|.+
T Consensus 281 EKnH~-~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~i 359 (465)
T KOG1387|consen 281 EKNHK-ILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKNVPYEKLVELLGKATI 359 (465)
T ss_pred ccccH-HHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEEecCCHHHHHHHhcccee
Confidence 99999 45444333322 35799999998754 445566888899999988744 4577899999
Q ss_pred EEecCCCCCCChHHHHHHHcCCCEEEcCCC-CccccccC----CCceeeecccccccccCCCCcccccCCCHHHHHHHHH
Q 043412 264 FVLPSRGEGWGRPLVEAMSMGLPVIATNWS-GPTEYLTE----ENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMR 338 (383)
Q Consensus 264 ~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~-g~~e~v~~----~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~ 338 (383)
.+.+-..|-||+.++|+||+|+-.|+.+.| +.-|++.+ .+|++.+ +.++.++++.
T Consensus 360 Gvh~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla~--------------------t~~EYaE~iL 419 (465)
T KOG1387|consen 360 GVHTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLAP--------------------TDEEYAEAIL 419 (465)
T ss_pred ehhhhhhhhcchhHHHHHhcCceEEEeCCCCCceeeeeccCCccceeecC--------------------ChHHHHHHHH
Confidence 999999999999999999999977777764 45677764 2566554 8899999999
Q ss_pred HHhc-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 043412 339 LVVS-NVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIKDILSS 381 (383)
Q Consensus 339 ~ll~-~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~~~~ 381 (383)
+++. |++.+..|+++||+. ..+|+-...-+.+...+.+++.+
T Consensus 420 kIv~~~~~~r~~~r~~AR~s-~~RFsE~~F~kd~~~~i~kll~e 462 (465)
T KOG1387|consen 420 KIVKLNYDERNMMRRNARKS-LARFGELKFDKDWENPICKLLEE 462 (465)
T ss_pred HHHHcCHHHHHHHHHHHHHH-HHHhhHHHHHHhHhHHHHHhhcc
Confidence 9987 788899999999996 57899999999999999888764
No 90
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.75 E-value=1.5e-17 Score=164.19 Aligned_cols=282 Identities=15% Similarity=0.115 Sum_probs=187.4
Q ss_pred cEEEecCCCCCCCCcccccCCCCCCCCCCCcccccceeeeecCCCCHHHHHhcCCCCEEEEeChHHHHHHHh-----cCC
Q 043412 70 TVVICHSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETDRVSPEHVKRCNRMDFVWVPTDFHVSTFIR-----SGV 144 (383)
Q Consensus 70 DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~-----~~~ 144 (383)
|+|.+|+.+...++.++....-....++......-...+|..-.+...+.+.+-.||.|-+.+....+.|.+ .|.
T Consensus 233 D~VWVHDYHL~LlP~~LR~~~p~~~IGfFlHiPFPs~Eifr~LP~r~elL~glL~aDlIGFqT~~y~rhFl~~c~rlLg~ 312 (934)
T PLN03064 233 DVVWCHDYHLMFLPKCLKEYNSNMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGL 312 (934)
T ss_pred CEEEEecchhhHHHHHHHHhCCCCcEEEEecCCCCChHHHhhCCcHHHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHhCc
Confidence 799999876555554444332111101100011111223333345666777789999999999999887764 222
Q ss_pred C-----------CCCeEEecCCCcCCCCCCCCCCCCccccC--CccccccCCCCCCCCcEEEEEeeccccccCHHHHHHH
Q 043412 145 D-----------PAKVVKIVQPVHVGFFDPVNCDPIDLASI--GKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKA 211 (383)
Q Consensus 145 ~-----------~~~i~vi~ngid~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a 211 (383)
. ..++.+.|-|||.+.|............. -+.. -.++.+|++++|++..||+...++|
T Consensus 313 ~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr~~--------~~g~kiIlgVDRLD~~KGI~~kL~A 384 (934)
T PLN03064 313 EGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKELKER--------FAGRKVMLGVDRLDMIKGIPQKILA 384 (934)
T ss_pred cccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHHHHHH--------hCCceEEEEeeccccccCHHHHHHH
Confidence 1 12356779999998886543221100000 0111 1357899999999999999999999
Q ss_pred HHHHhccCCCeE--EEEE--eCCCCCCCchHHH----HHHHHhhCC----C-------------C-CccccccccCceEE
Q 043412 212 YLEEFSKADGVV--LYLL--TNPYHSGRDFGNK----IVNFVEDSD----L-------------E-KPDDGWAPAADVFV 265 (383)
Q Consensus 212 ~~~l~~~~~~~~--l~i~--G~~~~~~~~~~~~----~~~~~~~~~----~-------------~-~~v~~~~~~adi~v 265 (383)
+.++++++|+++ ++++ ......+.+.... +.+++...+ - . +++..+|+.||+++
T Consensus 385 fE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~l 464 (934)
T PLN03064 385 FEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVAL 464 (934)
T ss_pred HHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEEE
Confidence 999999888753 3333 3322222223333 333333322 1 0 44568999999999
Q ss_pred ecCCCCCCChHHHHHHHcCC----CEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHh
Q 043412 266 LPSRGEGWGRPLVEAMSMGL----PVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVV 341 (383)
Q Consensus 266 ~ps~~e~~~~~~~Ea~a~G~----PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll 341 (383)
.||..||++++..|||+|+. ++|.|...|..+.+. ..+++|+|. |+++++++|.+++
T Consensus 465 vTslrDGmNLva~Eyva~~~~~~GvLILSEfaGaa~~L~-~~AllVNP~------------------D~~~vA~AI~~AL 525 (934)
T PLN03064 465 VTSLRDGMNLVSYEFVACQDSKKGVLILSEFAGAAQSLG-AGAILVNPW------------------NITEVAASIAQAL 525 (934)
T ss_pred eCccccccCchHHHHHHhhcCCCCCeEEeCCCchHHHhC-CceEEECCC------------------CHHHHHHHHHHHH
Confidence 99999999999999999954 455588888887772 245666655 9999999999999
Q ss_pred c-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 043412 342 S-NVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIKDIL 379 (383)
Q Consensus 342 ~-~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~~ 379 (383)
+ ++++++.+.++.++.+ ..+|+..+++.+.+-+.+..
T Consensus 526 ~M~~~Er~~r~~~~~~~V-~~~d~~~Wa~~fl~~L~~~~ 563 (934)
T PLN03064 526 NMPEEEREKRHRHNFMHV-TTHTAQEWAETFVSELNDTV 563 (934)
T ss_pred hCCHHHHHHHHHHHHhhc-ccCCHHHHHHHHHHHHHHHH
Confidence 8 8888888888888874 67999999999888777664
No 91
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.73 E-value=4.7e-17 Score=150.10 Aligned_cols=323 Identities=14% Similarity=0.058 Sum_probs=181.1
Q ss_pred CCCCChhHHHH--HHHHHHHhcccCCCceeeeecCCCc--------ccchhh--cCCC------hhhhhHHHHHHhhhcC
Q 043412 5 LSGGGYSSESW--SYILALNEHVKNPRFKLAIEHHGDL--------QSLQFW--EGLP------HHMRNLAVELYNTECR 66 (383)
Q Consensus 5 ~~~~G~~~~~~--~l~~~l~~~g~~~~~~~~~~~~~~~--------~~~~~~--~~~~------~~~~~~~~~l~~~~~~ 66 (383)
++.||.+-|.+ .++++|++.+....+ +.++ .+.. .+...+ .++. ....+...++.+++++
T Consensus 10 i~aGgtsGhi~paal~~~l~~~~~~~~~-~g~g-g~~m~~~g~~~~~~~~~l~v~G~~~~l~~~~~~~~~~~~~~~~l~~ 87 (385)
T TIGR00215 10 LVAGEASGDILGAGLRQQLKEHYPNARF-IGVA-GPRMAAEGCEVLYSMEELSVMGLREVLGRLGRLLKIRKEVVQLAKQ 87 (385)
T ss_pred EEeCCccHHHHHHHHHHHHHhcCCCcEE-EEEc-cHHHHhCcCccccChHHhhhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777766433 899999987654332 2222 1111 111100 1111 1223345667788899
Q ss_pred CCccEEEecCCCCCCCCcc--cccCCCCCCCCCCCccccc-ceeeeecCCCCHHHHHhcCCCCEEEEeChHHHHHHHhcC
Q 043412 67 TNETVVICHSEPGAWYPPL--FDTLPCPPTPGYGDFMAVI-GRTMFETDRVSPEHVKRCNRMDFVWVPTDFHVSTFIRSG 143 (383)
Q Consensus 67 ~~pDiV~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~~ 143 (383)
++||+|++++.++ +...+ .......++ +.+.. ..|.|...+ -....+.+|.+++.++...+.+.+.+
T Consensus 88 ~kPd~vi~~g~~~-~~~~~a~aa~~~gip~-----v~~i~P~~waw~~~~----~r~l~~~~d~v~~~~~~e~~~~~~~g 157 (385)
T TIGR00215 88 AKPDLLVGIDAPD-FNLTKELKKKDPGIKI-----IYYISPQVWAWRKWR----AKKIEKATDFLLAILPFEKAFYQKKN 157 (385)
T ss_pred cCCCEEEEeCCCC-ccHHHHHHHhhCCCCE-----EEEeCCcHhhcCcch----HHHHHHHHhHhhccCCCcHHHHHhcC
Confidence 9999999998533 22111 111211111 22211 123343222 22224679999999999999988766
Q ss_pred CCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEE-Eee-cccc-ccCHHHHHHHHHHHhccCC
Q 043412 144 VDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFL-SVF-KWEY-RKGWDVLLKAYLEEFSKAD 220 (383)
Q Consensus 144 ~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~-~~g-~~~~-~K~~~~ll~a~~~l~~~~~ 220 (383)
. ++.+++|++.......... ....+.+++ ++++.++++ ..| |..+ .|+...+++++..+.++.|
T Consensus 158 ~---~~~~vGnPv~~~~~~~~~~---~~~~r~~lg-------l~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p 224 (385)
T TIGR00215 158 V---PCRFVGHPLLDAIPLYKPD---RKSAREKLG-------IDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEP 224 (385)
T ss_pred C---CEEEECCchhhhccccCCC---HHHHHHHcC-------CCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCC
Confidence 4 6678888874322110000 000111222 245555554 344 5555 6889999999999988889
Q ss_pred CeEEEEEeCCCCCCCchHHHHHHHHhhCCCC-------CccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCC-
Q 043412 221 GVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE-------KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNW- 292 (383)
Q Consensus 221 ~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~- 292 (383)
++++++.+... ...+.+++....++.. .+...+|+.||++|++| |.+.+|+|++|+|+|....
T Consensus 225 ~~~~vi~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~aADl~V~~S-----Gt~tlEa~a~G~P~Vv~yk~ 295 (385)
T TIGR00215 225 DLRRVLPVVNF----KRRLQFEQIKAEYGPDLQLHLIDGDARKAMFAADAALLAS-----GTAALEAALIKTPMVVGYRM 295 (385)
T ss_pred CeEEEEEeCCc----hhHHHHHHHHHHhCCCCcEEEECchHHHHHHhCCEEeecC-----CHHHHHHHHcCCCEEEEEcC
Confidence 99987765431 2234444444443222 45567889999999999 7778899999999888843
Q ss_pred CCccccccCCCceeeecccccccccCCCCcccc--cCCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHhcCC
Q 043412 293 SGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFW--AEPSVDKLRALMRLVVSNV----DEAKAKGKQAREDMIQRFS 363 (383)
Q Consensus 293 ~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~--~~~~~~~la~~i~~ll~~~----~~~~~~~~~a~~~~~~~~s 363 (383)
+.....+... -+-++.-.+|++..+..-...+ .+.+++.+++.+.++++|+ +.++++.+.-.+ +.+...
T Consensus 296 ~pl~~~~~~~-~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~-~~~~l~ 370 (385)
T TIGR00215 296 KPLTFLIARR-LVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEE-LRQRIY 370 (385)
T ss_pred CHHHHHHHHH-HHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHH-HHHHhc
Confidence 2222222211 0000111123333333222222 2238999999999999999 888777666554 444443
No 92
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.72 E-value=1.6e-16 Score=150.36 Aligned_cols=206 Identities=14% Similarity=0.110 Sum_probs=158.0
Q ss_pred HhcCCCCEEEEeChHHHHHHHh-cC-C-CCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEe
Q 043412 120 KRCNRMDFVWVPTDFHVSTFIR-SG-V-DPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSV 196 (383)
Q Consensus 120 ~~~~~ad~vi~~s~~~~~~~~~-~~-~-~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~ 196 (383)
..+.++|.+|+.++..++.+.. ++ . ...++..||.+.- ... +..+. .....++++
T Consensus 268 ~~~~~~d~iIv~T~~q~~~l~~~~~~~~~~~~v~~Ip~~~~-~~~-~~~s~--------------------r~~~~~I~v 325 (519)
T TIGR03713 268 ESLSRADLIIVDREDIERLLEENYRENYVEFDISRITPFDT-RLR-LGQSQ--------------------QLYETEIGF 325 (519)
T ss_pred hChhhcCeEEEcCHHHHHHHHHHhhhcccCCcceeeCccce-EEe-cChhh--------------------cccceEEEE
Confidence 3467899999999887776665 32 1 1135667775432 111 11111 112346666
Q ss_pred e--ccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCC------------------------
Q 043412 197 F--KWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDL------------------------ 250 (383)
Q Consensus 197 g--~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~------------------------ 250 (383)
+ |+ +.|.++.+++++.++..+.|+++|.+.|.+.+ ......+++.+++++.
T Consensus 326 ~idrL-~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (519)
T TIGR03713 326 WIDGL-SDEELQQILQQLLQYILKNPDYELKILTYNND--NDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQTD 402 (519)
T ss_pred EcCCC-ChHHHHHHHHHHHHHHhhCCCeEEEEEEecCc--hhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcccch
Confidence 6 99 99999999999999999999999999998732 2334555444444322
Q ss_pred --------------CC--ccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCC-Cceeeeccccc
Q 043412 251 --------------EK--PDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEE-NGYPLLVGRMS 313 (383)
Q Consensus 251 --------------~~--~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~-~g~~~~~~~~~ 313 (383)
.. ++...|..+.+++.+|..|+++ +.+||+++|+|+| .-|..++|.++ ||+++.
T Consensus 403 ~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqI---nyg~~~~V~d~~NG~li~----- 473 (519)
T TIGR03713 403 EEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQI---NKVETDYVEHNKNGYIID----- 473 (519)
T ss_pred hhcccccEEEEEecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCee---ecCCceeeEcCCCcEEeC-----
Confidence 23 5668889999999999999999 9999999999999 44568889886 999995
Q ss_pred ccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043412 314 EVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVTDHI 375 (383)
Q Consensus 314 ~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~ 375 (383)
|.++|++++..+|.+++.++++...+.+. .++||-++++++|.+++
T Consensus 474 ---------------d~~~l~~al~~~L~~~~~wn~~~~~sy~~-~~~yS~~~i~~kW~~~~ 519 (519)
T TIGR03713 474 ---------------DISELLKALDYYLDNLKNWNYSLAYSIKL-IDDYSSENIIERLNELI 519 (519)
T ss_pred ---------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHH-HHHhhHHHHHHHHHhhC
Confidence 99999999999999999999999999997 58899999999998753
No 93
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.67 E-value=4e-17 Score=128.33 Aligned_cols=130 Identities=23% Similarity=0.250 Sum_probs=91.7
Q ss_pred cEEEEEeeccccccCHHHHHH-HHHHHhccCCCeEEEEEeCCCCCCCchHHHH-HHHHhhCCCCCccccccccCceEEec
Q 043412 190 EFVFLSVFKWEYRKGWDVLLK-AYLEEFSKADGVVLYLLTNPYHSGRDFGNKI-VNFVEDSDLEKPDDGWAPAADVFVLP 267 (383)
Q Consensus 190 ~~~i~~~g~~~~~K~~~~ll~-a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~adi~v~p 267 (383)
-+++++.|++.+.|+++.+++ ++.++.++.|+++|+|+|.++. ..+++ .+.+...+..+++..+++.||+++.|
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~----~l~~~~~~~v~~~g~~~e~~~~l~~~dv~l~p 77 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD----ELKRLRRPNVRFHGFVEELPEILAAADVGLIP 77 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS-----HHCCHHHCTEEEE-S-HHHHHHHHC-SEEEE-
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH----HHHHhcCCCEEEcCCHHHHHHHHHhCCEEEEE
Confidence 467999999999999999999 9999999999999999998632 12222 22333344446788999999999999
Q ss_pred CC-CCCCChHHHHHHHcCCCEEEcCCCCccccccC-CCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcC
Q 043412 268 SR-GEGWGRPLVEAMSMGLPVIATNWSGPTEYLTE-ENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSN 343 (383)
Q Consensus 268 s~-~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~-~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~ 343 (383)
+. .++++.+++|||++|+|||+++. +..++... +.|.++ .+ |+++++++|.++++|
T Consensus 78 ~~~~~~~~~k~~e~~~~G~pvi~~~~-~~~~~~~~~~~~~~~-~~------------------~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 78 SRFNEGFPNKLLEAMAAGKPVIASDN-GAEGIVEEDGCGVLV-AN------------------DPEELAEAIERLLND 135 (135)
T ss_dssp BSS-SCC-HHHHHHHCTT--EEEEHH-HCHCHS---SEEEE--TT-------------------HHHHHHHHHHHHH-
T ss_pred eeCCCcCcHHHHHHHHhCCCEEECCc-chhhheeecCCeEEE-CC------------------CHHHHHHHHHHHhcC
Confidence 85 67899999999999999999999 56666654 455555 43 999999999999875
No 94
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.62 E-value=9.7e-15 Score=139.97 Aligned_cols=249 Identities=12% Similarity=0.043 Sum_probs=175.3
Q ss_pred hcCCCCEEEEeChHHHHHHHh-cC-------CCCCCeEEecCCCcCCCCCCCCCCCC-----------------------
Q 043412 121 RCNRMDFVWVPTDFHVSTFIR-SG-------VDPAKVVKIVQPVHVGFFDPVNCDPI----------------------- 169 (383)
Q Consensus 121 ~~~~ad~vi~~s~~~~~~~~~-~~-------~~~~~i~vi~ngid~~~~~~~~~~~~----------------------- 169 (383)
.+..||.|.++|+...+..+. ++ ....++.-|.||||...+.+......
T Consensus 259 ai~~S~~vngVS~lh~~v~~~l~~~l~~~~~~~~~~i~gItNGId~~~W~~~~~~~l~~~y~~~~w~~~~~~~~~~~~~~ 338 (601)
T TIGR02094 259 ALRLSRIANGVSKLHGEVSRKMWQFLYPGYEEEEVPIGYVTNGVHNPTWVAPELRDLYERYLGENWRELLADEELWEAID 338 (601)
T ss_pred HHHhCCeeeeecHHHHHHHHHHHHhhhhhcccccCCccceeCCccccccCCHHHHHHHHHhCCcchhccchhhhhhhhcc
Confidence 368899999999999884443 21 11235888999999988765432111
Q ss_pred --------ccccCCcccccc----------------------CCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhc--
Q 043412 170 --------DLASIGKPVLGL----------------------SNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFS-- 217 (383)
Q Consensus 170 --------~~~~~~~~~l~~----------------------~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~-- 217 (383)
..+...+..|.. ..+.++++.+++++++|+..+||.++++.++.++.+
T Consensus 339 ~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~gl~~dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~ 418 (601)
T TIGR02094 339 DIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAILMATDRFLDPDVLTIGFARRFATYKRADLIFRDLERLARIL 418 (601)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhhccccCCCCcEEEEEEcchhhhhHHHHHHHHHHHHHHh
Confidence 000000111100 012256788999999999999999999999888864
Q ss_pred cC--CCeEEEEEeCCCCCCC---chHHHHHHHHhhCCCCCcc-----------ccccccCceEEe-cCC-CCCCChHHHH
Q 043412 218 KA--DGVVLYLLTNPYHSGR---DFGNKIVNFVEDSDLEKPD-----------DGWAPAADVFVL-PSR-GEGWGRPLVE 279 (383)
Q Consensus 218 ~~--~~~~l~i~G~~~~~~~---~~~~~~~~~~~~~~~~~~v-----------~~~~~~adi~v~-ps~-~e~~~~~~~E 279 (383)
+. .+++|++.|.+.+.+. .+...+.++.+.....+++ ..+++.||++++ ||+ +|++|++-|-
T Consensus 419 ~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMk 498 (601)
T TIGR02094 419 NNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVFLENYDINLARYLVSGVDVWLNNPRRPLEASGTSGMK 498 (601)
T ss_pred hCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEEEEcCCCHHHHHHHhhhheeEEeCCCCCcCCchHHHHH
Confidence 22 4699999999854221 2445555555553344443 366799999999 999 9999999999
Q ss_pred HHHcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHh-----cC-----HHHHHH
Q 043412 280 AMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVV-----SN-----VDEAKA 349 (383)
Q Consensus 280 a~a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll-----~~-----~~~~~~ 349 (383)
||..|.+.+++-.|...|..+.+|||.+..+.. + .+...-+..|+++|.++|++.+ ++ |+.+.+
T Consensus 499 a~~nGgL~~sv~DG~~~E~~~~~nGf~f~~~~~-~-----~~~~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~ 572 (601)
T TIGR02094 499 AAMNGVLNLSILDGWWGEGYDGDNGWAIGDGEE-Y-----DDEEEQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVE 572 (601)
T ss_pred HHHcCCceeecccCcccccCCCCcEEEECCCcc-c-----cccccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHH
Confidence 999999999999998888886679999875210 0 0111223459999999997655 23 556788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043412 350 KGKQAREDMIQRFSPETVAGIVTDHI 375 (383)
Q Consensus 350 ~~~~a~~~~~~~~s~~~~~~~~~~~~ 375 (383)
|.+++.......|||++++++|.+.|
T Consensus 573 ~~k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 573 MMKESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 88888765555899999999999887
No 95
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.58 E-value=1.4e-14 Score=105.51 Aligned_cols=91 Identities=25% Similarity=0.365 Sum_probs=83.4
Q ss_pred eEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCC-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHHh
Q 043412 263 VFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVV 341 (383)
Q Consensus 263 i~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll 341 (383)
+++.|+..+++++.++|+||||+|+|+++.+++.+++.++ .++.++ |++++.+++..++
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~~--------------------~~~el~~~i~~ll 60 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITYN--------------------DPEELAEKIEYLL 60 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEEC--------------------CHHHHHHHHHHHH
Confidence 4678988899999999999999999999999999999887 556555 8999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043412 342 SNVDEAKAKGKQAREDMIQRFSPETVAGIVTD 373 (383)
Q Consensus 342 ~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~ 373 (383)
+||+.+++++++|++.+.++|+|+..++++.+
T Consensus 61 ~~~~~~~~ia~~a~~~v~~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 61 ENPEERRRIAKNARERVLKRHTWEHRAEQILE 92 (92)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHC
Confidence 99999999999999999999999999998863
No 96
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=99.53 E-value=3.4e-13 Score=119.88 Aligned_cols=307 Identities=15% Similarity=0.131 Sum_probs=190.7
Q ss_pred CCChhHHHHHHHHHHHhcccCCCceeee-ecCCCc------ccchhhcCCChhhhhHHHHHHhhhcCCCccEEEecCCCC
Q 043412 7 GGGYSSESWSYILALNEHVKNPRFKLAI-EHHGDL------QSLQFWEGLPHHMRNLAVELYNTECRTNETVVICHSEPG 79 (383)
Q Consensus 7 ~~G~~~~~~~l~~~l~~~g~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDiV~~~~~~~ 79 (383)
+=|-.+.+.-+++.|.+......+.+.. +..|.- .+.-...-+|.+.. ..+.++++..+||+++.... .
T Consensus 58 SVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~~---~~v~rFl~~~~P~l~Ii~Et-E 133 (419)
T COG1519 58 SVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDLP---IAVRRFLRKWRPKLLIIMET-E 133 (419)
T ss_pred chhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCch---HHHHHHHHhcCCCEEEEEec-c
Confidence 3466678888999999885433332222 222210 01011223454433 34566788899999887642 2
Q ss_pred CCCCcccccC---CCCCCCCCCCcccccc-eeeeecCCCCHHHHHhcCCCCEEEEeChHHHHHHHhcCCCCCCeEEecC-
Q 043412 80 AWYPPLFDTL---PCPPTPGYGDFMAVIG-RTMFETDRVSPEHVKRCNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQ- 154 (383)
Q Consensus 80 ~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~n- 154 (383)
.|. .++... .++.+ .. ...++ +......+.+......+++.|.|++-|+..++.+.++|.+ ++.+..|
T Consensus 134 lWP-nli~e~~~~~~p~~-Lv---NaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~Rf~~LGa~--~v~v~GNl 206 (419)
T COG1519 134 LWP-NLINELKRRGIPLV-LV---NARLSDRSFARYAKLKFLARLLFKNIDLILAQSEEDAQRFRSLGAK--PVVVTGNL 206 (419)
T ss_pred ccH-HHHHHHHHcCCCEE-EE---eeeechhhhHHHHHHHHHHHHHHHhcceeeecCHHHHHHHHhcCCc--ceEEecce
Confidence 342 232222 22222 00 00000 1110012233334445799999999999999999999987 4777777
Q ss_pred CCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCC
Q 043412 155 PVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSG 234 (383)
Q Consensus 155 gid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~ 234 (383)
-.|.+ ............+..+ ...+.+++..+. ....-+.++++++++++++||..++++-..
T Consensus 207 Kfd~~----~~~~~~~~~~~~r~~l-------~~~r~v~iaaST--H~GEeei~l~~~~~l~~~~~~~llIlVPRH---- 269 (419)
T COG1519 207 KFDIE----PPPQLAAELAALRRQL-------GGHRPVWVAAST--HEGEEEIILDAHQALKKQFPNLLLILVPRH---- 269 (419)
T ss_pred eecCC----CChhhHHHHHHHHHhc-------CCCCceEEEecC--CCchHHHHHHHHHHHHhhCCCceEEEecCC----
Confidence 23322 1111110000112222 122677777775 333345588999999999999999999754
Q ss_pred CchHHHHHHHHhhCCCC----------------------CccccccccCceEEe-cCCCCCCChHHHHHHHcCCCEEEcC
Q 043412 235 RDFGNKIVNFVEDSDLE----------------------KPDDGWAPAADVFVL-PSRGEGWGRPLVEAMSMGLPVIATN 291 (383)
Q Consensus 235 ~~~~~~~~~~~~~~~~~----------------------~~v~~~~~~adi~v~-ps~~e~~~~~~~Ea~a~G~PvI~~~ 291 (383)
++..+.+.++++..|+. .++..+|..+|+.+. -|..+-.|..++|++++|+|||...
T Consensus 270 pERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~Gp 349 (419)
T COG1519 270 PERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIFGP 349 (419)
T ss_pred hhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCChhhHHHcCCCEEeCC
Confidence 56778888999988775 234578899998555 4777677899999999999999987
Q ss_pred C-CCccccccC----CCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 043412 292 W-SGPTEYLTE----ENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQR 361 (383)
Q Consensus 292 ~-~g~~e~v~~----~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 361 (383)
. -...|+.+. +.++.|+ |.+.+++++..++.|++.+.+|++++...+.++
T Consensus 350 ~~~Nf~ei~~~l~~~ga~~~v~--------------------~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~ 404 (419)
T COG1519 350 YTFNFSDIAERLLQAGAGLQVE--------------------DADLLAKAVELLLADEDKREAYGRAGLEFLAQN 404 (419)
T ss_pred ccccHHHHHHHHHhcCCeEEEC--------------------CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 6 344444443 3444444 788888888888889999999999999877653
No 97
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.52 E-value=7.4e-14 Score=129.43 Aligned_cols=245 Identities=17% Similarity=0.189 Sum_probs=137.1
Q ss_pred cCCCCEEEEeChHHHHHHHh-cCCCCCCeEEecCCCcCCCCCCCCCCCC-ccccCCcc---cccc--CCCCCC-CCcEEE
Q 043412 122 CNRMDFVWVPTDFHVSTFIR-SGVDPAKVVKIVQPVHVGFFDPVNCDPI-DLASIGKP---VLGL--SNMNTS-SKEFVF 193 (383)
Q Consensus 122 ~~~ad~vi~~s~~~~~~~~~-~~~~~~~i~vi~ngid~~~~~~~~~~~~-~~~~~~~~---~l~~--~~~~~~-~~~~~i 193 (383)
...||.+.++|+-++..... ++-.++ .|+|||++.+.+.....-.. ....+++. .-++ ..++.+ ++.+.|
T Consensus 219 A~~AdvFTTVSeITa~Ea~~LL~r~pD--vV~pNGl~v~~~~~~~efqnl~~~~k~ki~~fv~~~f~g~~dfd~d~tl~~ 296 (633)
T PF05693_consen 219 AHYADVFTTVSEITAKEAEHLLKRKPD--VVTPNGLNVDKFPALHEFQNLHAKAKEKIHEFVRGHFYGHYDFDLDKTLYF 296 (633)
T ss_dssp HHHSSEEEESSHHHHHHHHHHHSS--S--EE----B-GGGTSSTTHHHHHHHHHHHHHHHHHHHHSTT---S-GGGEEEE
T ss_pred HHhcCeeeehhhhHHHHHHHHhCCCCC--EEcCCCccccccccchHHHHHHHHHHHHHHHHHHHHhcccCCCCccceEEE
Confidence 57799999999999999988 555433 68899999987765432110 00000000 0000 112223 567888
Q ss_pred EEeeccc-cccCHHHHHHHHHHHhcc----CCC---eEEEEEeCCCCCC--C-----chHHHHHHHHhh-----------
Q 043412 194 LSVFKWE-YRKGWDVLLKAYLEEFSK----ADG---VVLYLLTNPYHSG--R-----DFGNKIVNFVED----------- 247 (383)
Q Consensus 194 ~~~g~~~-~~K~~~~ll~a~~~l~~~----~~~---~~l~i~G~~~~~~--~-----~~~~~~~~~~~~----------- 247 (383)
...||.+ ..||+|.+|+|+.+|... ..+ +-|+++-.....- + ...+++++-+..
T Consensus 297 ftsGRYEf~NKG~D~fieAL~rLn~~lk~~~~~~tVVaFii~pa~~~~~~ve~l~~~a~~~~l~~t~~~i~~~~g~~~~~ 376 (633)
T PF05693_consen 297 FTSGRYEFRNKGIDVFIEALARLNHRLKQAGSDKTVVAFIIVPAKTNSFNVESLKGQAVTKQLRDTVDEIQEKIGKRLFE 376 (633)
T ss_dssp EEESSS-TTTTTHHHHHHHHHHHHHHHHHTT-S-EEEEEEE---SEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeeceeeecCCccHHHHHHHHHHHHHhhcCCCCeEEEEEEecCccCCcCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899987 579999999999888532 223 3344443221100 0 000111111100
Q ss_pred ----CCCC--------------------------------------------------------Ccc-------------
Q 043412 248 ----SDLE--------------------------------------------------------KPD------------- 254 (383)
Q Consensus 248 ----~~~~--------------------------------------------------------~~v------------- 254 (383)
..+. ++|
T Consensus 377 ~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~d~~~DpILn~irr~~L~N~~~drVKVIF~P~yL~~~d 456 (633)
T PF05693_consen 377 SCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLHDDSNDPILNMIRRLGLFNNPEDRVKVIFHPEYLSGTD 456 (633)
T ss_dssp HHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEETTTTT-HHHHHHHHTT----TT-SEEEEE--S---TTS
T ss_pred HHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCCCCccCHHHHHHHhCCCCCCCCCceEEEEeeccccCCC
Confidence 0110 111
Q ss_pred -------ccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccC
Q 043412 255 -------DGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAE 327 (383)
Q Consensus 255 -------~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~ 327 (383)
..++..||+.|+||++|+||.+.+|+.++|+|.|+|+..|...++.+..+ +. ...|+.+-.
T Consensus 457 gif~l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~---~~---------~~~GV~Vvd 524 (633)
T PF05693_consen 457 GIFNLDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIE---DP---------EEYGVYVVD 524 (633)
T ss_dssp SSS-S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS----HH---------GGGTEEEE-
T ss_pred CCCCCCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhc---cC---------cCCcEEEEe
Confidence 24449999999999999999999999999999999999988776664211 00 011222221
Q ss_pred C---C----HHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 043412 328 P---S----VDKLRALMRLVVS-NVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIKDILSS 381 (383)
Q Consensus 328 ~---~----~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~~~~ 381 (383)
+ + .+++++.|.++.. +.+.+..+..++.+ +.+..+|+.+...|.+.|..++++
T Consensus 525 R~~~n~~e~v~~la~~l~~f~~~~~rqri~~Rn~ae~-LS~~~dW~~~~~yY~~Ay~~AL~~ 585 (633)
T PF05693_consen 525 RRDKNYDESVNQLADFLYKFCQLSRRQRIIQRNRAER-LSDLADWKNFGKYYEKAYDLALRR 585 (633)
T ss_dssp SSSS-HHHHHHHHHHHHHHHHT--HHHHHHHHHHHHH-HGGGGBHHHHCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHh
Confidence 1 3 4555566655555 55666667677665 678999999999999999988765
No 98
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3.1e-12 Score=109.64 Aligned_cols=282 Identities=15% Similarity=0.145 Sum_probs=183.1
Q ss_pred hhhcCCCccEEEecCCCCCC--CCcccc-cC-CCCCCCCCCCcccc--cceeeeecCCC---CHHHHHh-cCCCCEEEEe
Q 043412 62 NTECRTNETVVICHSEPGAW--YPPLFD-TL-PCPPTPGYGDFMAV--IGRTMFETDRV---SPEHVKR-CNRMDFVWVP 131 (383)
Q Consensus 62 ~~~~~~~pDiV~~~~~~~~~--~~~~~~-~~-~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~-~~~ad~vi~~ 131 (383)
.++-...+|++...+++... ..+.+. .. .++.+..++++.+. .+...-....+ ..+..+. -+.||.=+|+
T Consensus 97 aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ysl~l~~~~g~~h~lV~l~~~~E~~fgk~a~~nLcV 176 (444)
T KOG2941|consen 97 ALFVLRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYSLQLKLKLGFQHPLVRLVRWLEKYFGKLADYNLCV 176 (444)
T ss_pred HHHhccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHHHHHHhhcCCCCchHHHHHHHHHHhhcccccchhh
Confidence 34456789999999887622 222222 11 12222233333332 11100001111 1112222 3789999999
Q ss_pred ChHHHHHHHh-cCCCCCCeEEecCCCc-----CC----CCCCCC----------CCCCccc---cCCccccccCCCCCCC
Q 043412 132 TDFHVSTFIR-SGVDPAKVVKIVQPVH-----VG----FFDPVN----------CDPIDLA---SIGKPVLGLSNMNTSS 188 (383)
Q Consensus 132 s~~~~~~~~~-~~~~~~~i~vi~ngid-----~~----~~~~~~----------~~~~~~~---~~~~~~l~~~~~~~~~ 188 (383)
++.+++.+.+ .|+. +..|++.--. .+ .|.+.. ....... ...+..-|+ ..-.++
T Consensus 177 T~AMr~dL~qnWgi~--ra~v~YDrPps~~~~l~~~H~lf~~l~~d~~~f~ar~~q~~~~~~taf~~k~~s~~-v~~~~~ 253 (444)
T KOG2941|consen 177 TKAMREDLIQNWGIN--RAKVLYDRPPSKPTPLDEQHELFMKLAGDHSPFRAREPQDKALERTAFTKKDASGD-VQLLPE 253 (444)
T ss_pred HHHHHHHHHHhcCCc--eeEEEecCCCCCCCchhHHHHHHhhhccccchhhhcccccchhhhhhHhhhcccch-hhhccC
Confidence 9999988887 8864 4555553111 11 111111 1100000 001111010 011245
Q ss_pred CcEEEEEeeccccccCHHHHHHHHHHH----hc---cCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC----------
Q 043412 189 KEFVFLSVFKWEYRKGWDVLLKAYLEE----FS---KADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE---------- 251 (383)
Q Consensus 189 ~~~~i~~~g~~~~~K~~~~ll~a~~~l----~~---~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~---------- 251 (383)
...++++...+++..++..+++|+... .. ..|.+-++|.|.| +..+.+.+.+++.+++
T Consensus 254 ~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKG-----PlkE~Y~~~I~~~~~~~v~~~tpWL~ 328 (444)
T KOG2941|consen 254 RPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKG-----PLKEKYSQEIHEKNLQHVQVCTPWLE 328 (444)
T ss_pred CCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCC-----chhHHHHHHHHHhcccceeeeecccc
Confidence 567778888899999999999999732 11 1578888888888 7788888999998876
Q ss_pred -CccccccccCceEEec--CC-CCCCChHHHHHHHcCCCEEEcCCCCccccccCC-CceeeecccccccccCCCCccccc
Q 043412 252 -KPDDGWAPAADVFVLP--SR-GEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWA 326 (383)
Q Consensus 252 -~~v~~~~~~adi~v~p--s~-~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~ 326 (383)
++.+.+++.||+.|+- |. .--.|++++.-..||+||++-+.....|+++++ ||++++
T Consensus 329 aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkcl~ELVkh~eNGlvF~------------------ 390 (444)
T KOG2941|consen 329 AEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKCLDELVKHGENGLVFE------------------ 390 (444)
T ss_pred cccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecchhHHHHHhcCCCceEec------------------
Confidence 6778889999987754 32 345799999999999999999999999999996 999998
Q ss_pred CCCHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043412 327 EPSVDKLRALMRLVVS----NVDEAKAKGKQAREDMIQRFSPETVAGIVTD 373 (383)
Q Consensus 327 ~~~~~~la~~i~~ll~----~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~ 373 (383)
|.+++++.+..+++ |.+...++.+++++. +...|+...++...
T Consensus 391 --Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~--~e~RW~~~W~~~~~ 437 (444)
T KOG2941|consen 391 --DSEELAEQLQMLFKNFPDNADELNQLKKNLREE--QELRWDESWERTAL 437 (444)
T ss_pred --cHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH--HhhhHHHHHHHhhh
Confidence 99999999999999 788899999998884 66788776665543
No 99
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.48 E-value=2.1e-12 Score=119.69 Aligned_cols=179 Identities=9% Similarity=0.061 Sum_probs=130.5
Q ss_pred cCCCCEEEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeecccc
Q 043412 122 CNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEY 201 (383)
Q Consensus 122 ~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~ 201 (383)
..+.|.||+.++..++.+.+..-+..++.++|-|+=.. ...... ...+ +++++.
T Consensus 237 ~~~~~~iIv~T~~q~~di~~r~~~~~~~~~ip~g~i~~---~~~~~r------------------~~~~--~l~~t~--- 290 (438)
T TIGR02919 237 ETRNKKIIIPNKNEYEKIKELLDNEYQEQISQLGYLYP---FKKDNK------------------YRKQ--ALILTN--- 290 (438)
T ss_pred ccccCeEEeCCHHHHHHHHHHhCcccCceEEEEEEEEe---eccccC------------------Cccc--EEEECC---
Confidence 47899999999988887776322346788888886421 111110 1122 444441
Q ss_pred ccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhC-------CCCC-ccccccccCceEEecCCCCCC
Q 043412 202 RKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDS-------DLEK-PDDGWAPAADVFVLPSRGEGW 273 (383)
Q Consensus 202 ~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~-------~~~~-~v~~~~~~adi~v~ps~~e~~ 273 (383)
+..++++..+.++.|+++|.| |.+. +....+.++ .++ ++.. ++..+|..||+++.+|..|++
T Consensus 291 ----s~~I~~i~~Lv~~lPd~~f~I-ga~t----e~s~kL~~L-~~y~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~ 360 (438)
T TIGR02919 291 ----SDQIEHLEEIVQALPDYHFHI-AALT----EMSSKLMSL-DKYDNVKLYPNITTQKIQELYQTCDIYLDINHGNEI 360 (438)
T ss_pred ----HHHHHHHHHHHHhCCCcEEEE-EecC----cccHHHHHH-HhcCCcEEECCcChHHHHHHHHhccEEEEccccccH
Confidence 888999999999999999999 7653 333566555 333 3233 778999999999999999999
Q ss_pred ChHHHHHHHcCCCEEEcCCC-CccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHH
Q 043412 274 GRPLVEAMSMGLPVIATNWS-GPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGK 352 (383)
Q Consensus 274 ~~~~~Ea~a~G~PvI~~~~~-g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~ 352 (383)
++++.||+..|+||++.+.. +..+++.+ |.+++.+ ++++|+++|.+++.|++..+..-.
T Consensus 361 ~~al~eA~~~G~pI~afd~t~~~~~~i~~--g~l~~~~------------------~~~~m~~~i~~lL~d~~~~~~~~~ 420 (438)
T TIGR02919 361 LNAVRRAFEYNLLILGFEETAHNRDFIAS--ENIFEHN------------------EVDQLISKLKDLLNDPNQFRELLE 420 (438)
T ss_pred HHHHHHHHHcCCcEEEEecccCCcccccC--CceecCC------------------CHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999999985 44455555 6667666 999999999999999977655444
Q ss_pred HHHH
Q 043412 353 QARE 356 (383)
Q Consensus 353 ~a~~ 356 (383)
.-++
T Consensus 421 ~q~~ 424 (438)
T TIGR02919 421 QQRE 424 (438)
T ss_pred HHHH
Confidence 4333
No 100
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=99.45 E-value=4.5e-13 Score=123.56 Aligned_cols=282 Identities=12% Similarity=0.061 Sum_probs=184.5
Q ss_pred ccEEEecCCCCCCCCcccccCCCCCCCCCCCcccccceeeeecCCCCHHHHHhcCCCCEEEEeChHHHHHHHh-----cC
Q 043412 69 ETVVICHSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETDRVSPEHVKRCNRMDFVWVPTDFHVSTFIR-----SG 143 (383)
Q Consensus 69 pDiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~-----~~ 143 (383)
-|+|-+|+......+..+.........++.-....-...++..-++.....+.+-.+|.|-..+....+.|.+ .|
T Consensus 124 ~D~VWVHDYhL~llp~~LR~~~~~~~IgFFlHiPFPs~eifr~LP~r~eil~glL~aDlIGFqt~~y~rnFl~~~~~~lg 203 (474)
T PRK10117 124 DDIIWIHDYHLLPFASELRKRGVNNRIGFFLHIPFPTPEIFNALPPHDELLEQLCDYDLLGFQTENDRLAFLDCLSNLTR 203 (474)
T ss_pred CCEEEEeccHhhHHHHHHHHhCCCCcEEEEEeCCCCChHHHhhCCChHHHHHHHHhCccceeCCHHHHHHHHHHHHHHcC
Confidence 3799999766545454444332211101110111111223333445666777788999999999998887664 12
Q ss_pred CC------------CCCeEEecCCCcCCCCCCCCCCCCccc-cCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHH
Q 043412 144 VD------------PAKVVKIVQPVHVGFFDPVNCDPIDLA-SIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLK 210 (383)
Q Consensus 144 ~~------------~~~i~vi~ngid~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~ 210 (383)
.. .-++.+.|-|||++.|........... ..-+..+ .++.+|+.+.|++..||+..=++
T Consensus 204 ~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~~~~~~~~~lr~~~--------~~~~lilgVDRLDytKGi~~rl~ 275 (474)
T PRK10117 204 VTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAGPLPPKLAQLKAEL--------KNVQNIFSVERLDYSKGLPERFL 275 (474)
T ss_pred CcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhchHHHHHHHHHHHc--------CCCeEEEEecccccccCHHHHHH
Confidence 11 123566788999887754322111000 0001111 35778999999999999999999
Q ss_pred HHHHHhccCCC----eEEEEEeCCCCCCCch----HHHHHHHHhhCCCC------------------CccccccccCceE
Q 043412 211 AYLEEFSKADG----VVLYLLTNPYHSGRDF----GNKIVNFVEDSDLE------------------KPDDGWAPAADVF 264 (383)
Q Consensus 211 a~~~l~~~~~~----~~l~i~G~~~~~~~~~----~~~~~~~~~~~~~~------------------~~v~~~~~~adi~ 264 (383)
|+.++++++|+ +.|+-+...+..+.+. ..++.+.+...+-. +++..+|+.||++
T Consensus 276 Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~ 355 (474)
T PRK10117 276 AYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVG 355 (474)
T ss_pred HHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhccEE
Confidence 99999999875 5676665543333222 23344444332111 3345888999999
Q ss_pred EecCCCCCCChHHHHHHHcCC-----CEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHH
Q 043412 265 VLPSRGEGWGRPLVEAMSMGL-----PVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRL 339 (383)
Q Consensus 265 v~ps~~e~~~~~~~Ea~a~G~-----PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ 339 (383)
+.++..+|+.++..|+.+|-. .+|.|...|..+.+. ..++|+|- |.++++++|.+
T Consensus 356 lVTplRDGMNLVAkEyva~q~~~~~GvLILSefAGaA~~L~--~AllVNP~------------------d~~~~A~Ai~~ 415 (474)
T PRK10117 356 LVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELT--SALIVNPY------------------DRDEVAAALDR 415 (474)
T ss_pred EecccccccccccchheeeecCCCCccEEEecccchHHHhC--CCeEECCC------------------CHHHHHHHHHH
Confidence 999999999999999999965 388888888877774 25555554 99999999999
Q ss_pred HhcC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 043412 340 VVSN-VDEAKAKGKQAREDMIQRFSPETVAGIVTDHIKDIL 379 (383)
Q Consensus 340 ll~~-~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~~ 379 (383)
.++- ++++++.-+..++. ...++...+++.+.+-+.++.
T Consensus 416 AL~Mp~~Er~~R~~~l~~~-v~~~dv~~W~~~fL~~L~~~~ 455 (474)
T PRK10117 416 ALTMPLAERISRHAEMLDV-IVKNDINHWQECFISDLKQIV 455 (474)
T ss_pred HHcCCHHHHHHHHHHHHHH-hhhCCHHHHHHHHHHHHHHhh
Confidence 9994 45565555666665 567899999999998887653
No 101
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.40 E-value=3.5e-12 Score=124.73 Aligned_cols=185 Identities=16% Similarity=0.076 Sum_probs=139.1
Q ss_pred CCCCcEEEEEeeccccccCHHHHHHHHHHHhcc----CCCeEEEEEeCCCCCCCc---hHHHHHHHHhhCCCCCcc----
Q 043412 186 TSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSK----ADGVVLYLLTNPYHSGRD---FGNKIVNFVEDSDLEKPD---- 254 (383)
Q Consensus 186 ~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~----~~~~~l~i~G~~~~~~~~---~~~~~~~~~~~~~~~~~v---- 254 (383)
++++.++++++.|+..+|+.++++..+.++.+- ..+++|+++|.+.+.+.. +...+.++.+...+.+++
T Consensus 474 ldpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVvfle 553 (778)
T cd04299 474 LDPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIVFLE 553 (778)
T ss_pred cCCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEEEEc
Confidence 567889999999999999999999988777541 136999999998654332 223444444433343343
Q ss_pred -------ccccccCceEEecCC--CCCCChHHHHHHHcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccc
Q 043412 255 -------DGWAPAADVFVLPSR--GEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFW 325 (383)
Q Consensus 255 -------~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~ 325 (383)
..+++.||+.++||+ .|++|++-|-||..|.+.+++-.|...|..+..||+.+..... .. ....-
T Consensus 554 ~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~~g~nGwaig~~~~---~~---~~~~~ 627 (778)
T cd04299 554 DYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGYDGENGWAIGDGDE---YE---DDEYQ 627 (778)
T ss_pred CCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCccccccCCCCceEeCCCcc---cc---Chhhc
Confidence 366699999999999 9999999999999999999999999999986679999976310 00 01112
Q ss_pred cCCCHHHHHHHHHHHhc----C------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043412 326 AEPSVDKLRALMRLVVS----N------VDEAKAKGKQAREDMIQRFSPETVAGIVTDHIK 376 (383)
Q Consensus 326 ~~~~~~~la~~i~~ll~----~------~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~ 376 (383)
+..|.++|.+.|++-+. + |+.+.+|.+++...+...|||++++++|.+-+-
T Consensus 628 d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y 688 (778)
T cd04299 628 DAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERFY 688 (778)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhH
Confidence 23378888888865333 2 677889999998877779999999999987653
No 102
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.40 E-value=2.6e-11 Score=109.42 Aligned_cols=252 Identities=15% Similarity=0.084 Sum_probs=145.4
Q ss_pred hhHHHHHHhhhcCCCccEEEecCCCCCCCCcccccCCCCCCCCCCCcccccceeeeecCCCC-HHHHHhcCCCCEEEEeC
Q 043412 54 RNLAVELYNTECRTNETVVICHSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETDRVS-PEHVKRCNRMDFVWVPT 132 (383)
Q Consensus 54 ~~~~~~l~~~~~~~~pDiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ad~vi~~s 132 (383)
.....+..+++++++||+|++.....+. +..+....+... . ..++.+... ..+....+.++.|.+.-
T Consensus 77 ~~~~~~a~~il~~~kPd~vig~Ggyvs~-P~~~Aa~~~~iP------v-----~ihEqn~~~G~ank~~~~~a~~V~~~f 144 (357)
T COG0707 77 LKGVLQARKILKKLKPDVVIGTGGYVSG-PVGIAAKLLGIP------V-----IIHEQNAVPGLANKILSKFAKKVASAF 144 (357)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCcccc-HHHHHHHhCCCC------E-----EEEecCCCcchhHHHhHHhhceeeecc
Confidence 3445666778899999999998655433 223333322222 1 112222222 22233345677776654
Q ss_pred hHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHH
Q 043412 133 DFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAY 212 (383)
Q Consensus 133 ~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~ 212 (383)
+. ...+.+++++.+..|++..+... ......... ...++++++.+|.-. |...+-+++
T Consensus 145 ~~-----~~~~~~~~~~~~tG~Pvr~~~~~-~~~~~~~~~-------------~~~~~~~ilV~GGS~---Ga~~ln~~v 202 (357)
T COG0707 145 PK-----LEAGVKPENVVVTGIPVRPEFEE-LPAAEVRKD-------------GRLDKKTILVTGGSQ---GAKALNDLV 202 (357)
T ss_pred cc-----ccccCCCCceEEecCcccHHhhc-cchhhhhhh-------------ccCCCcEEEEECCcc---hhHHHHHHH
Confidence 43 23445666899999999877664 221111100 011455555555432 333333333
Q ss_pred HHHhccCC-CeEEEEEeCCCCCCCchHHHHHHHHhhC------CCCCccccccccCceEEecCCCCCCChHHHHHHHcCC
Q 043412 213 LEEFSKAD-GVVLYLLTNPYHSGRDFGNKIVNFVEDS------DLEKPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGL 285 (383)
Q Consensus 213 ~~l~~~~~-~~~l~i~G~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~ 285 (383)
........ +++++..++. ...+++......+ .+.+++..+|+.||++++=+ .++++.|..++|+
T Consensus 203 ~~~~~~l~~~~~v~~~~G~-----~~~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADLvIsRa----Ga~Ti~E~~a~g~ 273 (357)
T COG0707 203 PEALAKLANRIQVIHQTGK-----NDLEELKSAYNELGVVRVLPFIDDMAALLAAADLVISRA----GALTIAELLALGV 273 (357)
T ss_pred HHHHHHhhhCeEEEEEcCc-----chHHHHHHHHhhcCcEEEeeHHhhHHHHHHhccEEEeCC----cccHHHHHHHhCC
Confidence 33322222 5777666653 2244444444433 45688999999999999544 5789999999999
Q ss_pred CEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCC--CHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 043412 286 PVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEP--SVDKLRALMRLVVSNVDEAKAKGKQARED 357 (383)
Q Consensus 286 PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~--~~~~la~~i~~ll~~~~~~~~~~~~a~~~ 357 (383)
|+|.-+.+...+--+..|.-.+. +.+.|..+... +++.+.+.|.+++++++..++|.+++++.
T Consensus 274 P~IliP~p~~~~~~Q~~NA~~l~---------~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~ 338 (357)
T COG0707 274 PAILVPYPPGADGHQEYNAKFLE---------KAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKL 338 (357)
T ss_pred CEEEeCCCCCccchHHHHHHHHH---------hCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99988875442222111221111 11234444444 59999999999999999999999998764
No 103
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=99.40 E-value=5.6e-13 Score=124.52 Aligned_cols=282 Identities=16% Similarity=0.151 Sum_probs=159.2
Q ss_pred CccEEEecCCCCCCCCcccccCCCCCCCCCCCcccccceeeeecCCCCHHHHHhcCCCCEEEEeChHHHHHHHh-----c
Q 043412 68 NETVVICHSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETDRVSPEHVKRCNRMDFVWVPTDFHVSTFIR-----S 142 (383)
Q Consensus 68 ~pDiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~-----~ 142 (383)
.-|+|.+|+..-...+.++.........++.-....-...++..-++...+.+.+-.||.|-..+...++.|.. +
T Consensus 141 ~~D~VWVhDYhL~llP~~LR~~~~~~~IgfFlHiPFPs~e~fr~lP~r~eiL~glL~aDlIgFqt~~~~~nFl~~~~r~l 220 (474)
T PF00982_consen 141 PGDLVWVHDYHLMLLPQMLRERGPDARIGFFLHIPFPSSEIFRCLPWREEILRGLLGADLIGFQTFEYARNFLSCCKRLL 220 (474)
T ss_dssp TT-EEEEESGGGTTHHHHHHHTT--SEEEEEE-S----HHHHTTSTTHHHHHHHHTTSSEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCcHHHHHHHHHhhcCCceEeeEEecCCCCHHHHhhCCcHHHHHHHhhcCCEEEEecHHHHHHHHHHHHHHc
Confidence 45799999766555555444432221101100000011223333445666777789999999999999887653 2
Q ss_pred CC--CC-----------CCeEEecCCCcCCCCCCCCCCCCc--cccCCccccccCCCCCCCCcEEEEEeeccccccCHHH
Q 043412 143 GV--DP-----------AKVVKIVQPVHVGFFDPVNCDPID--LASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDV 207 (383)
Q Consensus 143 ~~--~~-----------~~i~vi~ngid~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ 207 (383)
|. .. -++.+.|-|||++.+......... ....-+..+ ..+..+|+.+.|++..||+..
T Consensus 221 g~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~~~-------~~~~~ii~gvDrld~~kGi~~ 293 (474)
T PF00982_consen 221 GLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEELREKF-------KGKRKIIVGVDRLDYTKGIPE 293 (474)
T ss_dssp -EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHHHHHHHHT-------TT-SEEEEEE--B-GGG-HHH
T ss_pred CCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHHHHHhc-------CCCcEEEEEeccchhhcCHHH
Confidence 22 11 236677889998776432111110 000011111 123589999999999999999
Q ss_pred HHHHHHHHhccCCC----eEEEEEeCCCCCCCc----hHHHHHHHHhhC----CCC--------------CccccccccC
Q 043412 208 LLKAYLEEFSKADG----VVLYLLTNPYHSGRD----FGNKIVNFVEDS----DLE--------------KPDDGWAPAA 261 (383)
Q Consensus 208 ll~a~~~l~~~~~~----~~l~i~G~~~~~~~~----~~~~~~~~~~~~----~~~--------------~~v~~~~~~a 261 (383)
=+.|+.++++++|+ +.|+-++.....+.+ +..++.+++... |-. ++...+|+.|
T Consensus 294 kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~~a 373 (474)
T PF00982_consen 294 KLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYRAA 373 (474)
T ss_dssp HHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHHH-
T ss_pred HHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHHhh
Confidence 99999999998775 677766665443333 234444444332 211 3345888999
Q ss_pred ceEEecCCCCCCChHHHHHHHcCCC----EEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHH
Q 043412 262 DVFVLPSRGEGWGRPLVEAMSMGLP----VIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALM 337 (383)
Q Consensus 262 di~v~ps~~e~~~~~~~Ea~a~G~P----vI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i 337 (383)
|+++.+|..+|+.++..|+.+|..+ +|.|...|..+.+.++ .+ ++.|.|.+++|++|
T Consensus 374 Dv~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefaGaa~~L~~~-al------------------~VNP~d~~~~A~ai 434 (474)
T PF00982_consen 374 DVALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFAGAAEQLSEA-AL------------------LVNPWDIEEVADAI 434 (474)
T ss_dssp SEEEE--SSBS--HHHHHHHHHS-TS--EEEEETTBGGGGT-TTS--E------------------EE-TT-HHHHHHHH
T ss_pred hhEEecchhhccCCcceEEEEEecCCCCceEeeccCCHHHHcCCc-cE------------------EECCCChHHHHHHH
Confidence 9999999999999999999999775 7888888887776542 24 44455999999999
Q ss_pred HHHhc-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043412 338 RLVVS-NVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIK 376 (383)
Q Consensus 338 ~~ll~-~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~ 376 (383)
.+.++ .+++++..-+..++. ...++...+++.+.+-++
T Consensus 435 ~~AL~M~~~Er~~r~~~~~~~-v~~~~~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 435 HEALTMPPEERKERHARLREY-VREHDVQWWAESFLRDLK 473 (474)
T ss_dssp HHHHT--HHHHHHHHHHHHHH-HHHT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH-hHhCCHHHHHHHHHHHhh
Confidence 99999 455666666666665 467899999998887664
No 104
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.37 E-value=3.2e-11 Score=111.56 Aligned_cols=206 Identities=17% Similarity=0.143 Sum_probs=129.7
Q ss_pred cCCCCEEEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeecc--
Q 043412 122 CNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKW-- 199 (383)
Q Consensus 122 ~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~-- 199 (383)
-+.|+.+++..+...+.+.+.|+ ++.++.|++-....... .. ++. ++...+++..|+-
T Consensus 158 ~~~a~~v~~~~~~t~~~l~~~g~---k~~~vGnPv~d~l~~~~-~~----------~l~------~~~~~lllLpGSR~a 217 (396)
T TIGR03492 158 SRRCLAVFVRDRLTARDLRRQGV---RASYLGNPMMDGLEPPE-RK----------PLL------TGRFRIALLPGSRPP 217 (396)
T ss_pred chhhCEEeCCCHHHHHHHHHCCC---eEEEeCcCHHhcCcccc-cc----------ccC------CCCCEEEEECCCCHH
Confidence 47899999999999999998876 89999998743322111 10 110 1234455555543
Q ss_pred ccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCC-----------------------CCcccc
Q 043412 200 EYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDL-----------------------EKPDDG 256 (383)
Q Consensus 200 ~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~v~~ 256 (383)
+..+++..+++++..+.++ +++++++...+. ...+.+++.....++ .+++..
T Consensus 218 e~~~~lp~~l~al~~L~~~-~~~~~v~~~~~~----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 292 (396)
T TIGR03492 218 EAYRNLKLLLRALEALPDS-QPFVFLAAIVPS----LSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAE 292 (396)
T ss_pred HHHccHHHHHHHHHHHhhC-CCeEEEEEeCCC----CCHHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHH
Confidence 2346788999999999766 788887765331 223445444443332 135567
Q ss_pred ccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCcc---ccccCCCceeeecccccccccCCCCcccccCCCHHHH
Q 043412 257 WAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPT---EYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKL 333 (383)
Q Consensus 257 ~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~---e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 333 (383)
+++.||++|..| |.+..|++++|+|+|.....+.. .+...... + .+.+..+.+.+++.+
T Consensus 293 ~l~~ADlvI~rS-----Gt~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~-l------------~g~~~~l~~~~~~~l 354 (396)
T TIGR03492 293 ILHWADLGIAMA-----GTATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSR-L------------LGGSVFLASKNPEQA 354 (396)
T ss_pred HHHhCCEEEECc-----CHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHh-h------------cCCEEecCCCCHHHH
Confidence 889999999886 56679999999999998854321 11111000 0 001222333478999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 043412 334 RALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGI 370 (383)
Q Consensus 334 a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~ 370 (383)
++++.++++|++.+++|.+++++........+.+++.
T Consensus 355 ~~~l~~ll~d~~~~~~~~~~~~~~lg~~~a~~~ia~~ 391 (396)
T TIGR03492 355 AQVVRQLLADPELLERCRRNGQERMGPPGASARIAES 391 (396)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 9999999999998888886544433333344444433
No 105
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=1.7e-11 Score=112.74 Aligned_cols=280 Identities=14% Similarity=0.124 Sum_probs=182.8
Q ss_pred cEEEecCCCCCCCCcccccCCCCCCCCCCCcccccceeeeecCCCCHHHHHhcCCCCEEEEeChHHHHHHHh-----cC-
Q 043412 70 TVVICHSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETDRVSPEHVKRCNRMDFVWVPTDFHVSTFIR-----SG- 143 (383)
Q Consensus 70 DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~-----~~- 143 (383)
|+|.+|+.....++..++........++..........++..-++...+.+.+-.||.|-..++..++.|.. .+
T Consensus 149 DiIWVhDYhL~L~P~mlR~~~~~~~IgfFlHiPfPssEvfr~lP~r~eIl~gll~~dligFqt~~y~~nF~~~~~r~~~~ 228 (486)
T COG0380 149 DIIWVHDYHLLLVPQMLRERIPDAKIGFFLHIPFPSSEVFRCLPWREEILEGLLGADLIGFQTESYARNFLDLCSRLLGV 228 (486)
T ss_pred CEEEEEechhhhhHHHHHHhCCCceEEEEEeCCCCCHHHHhhCchHHHHHHHhhcCCeeEecCHHHHHHHHHHHHHhccc
Confidence 899999765544444444333222101100000011122222334555666688999999999999887653 11
Q ss_pred ------------CCCCCeEEecCCCcCCCCCCCCCCCCc-cccC-CccccccCCCCCCCCcEEEEEeeccccccCHHHHH
Q 043412 144 ------------VDPAKVVKIVQPVHVGFFDPVNCDPID-LASI-GKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLL 209 (383)
Q Consensus 144 ------------~~~~~i~vi~ngid~~~~~~~~~~~~~-~~~~-~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll 209 (383)
-...++..+|-|+|+..|......... .... -+..+ ..+..+|+.+-|++..||+..=+
T Consensus 229 ~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~v~~~~~el~~~~-------~~~~kiivgvDRlDy~kGi~~rl 301 (486)
T COG0380 229 TGDADIRFNGADGRIVKVGAFPIGIDPEEFERALKSPSVQEKVLELKAEL-------GRNKKLIVGVDRLDYSKGIPQRL 301 (486)
T ss_pred cccccccccccCCceEEEEEEeeecCHHHHHHhhcCCchhhHHHHHHHHh-------cCCceEEEEehhcccccCcHHHH
Confidence 011356678889999877654332211 1100 11111 24488999999999999999999
Q ss_pred HHHHHHhccCCC----eEEEEEeCCCCCCCc----hHHHHHHHHhhC----CCC--------------CccccccccCce
Q 043412 210 KAYLEEFSKADG----VVLYLLTNPYHSGRD----FGNKIVNFVEDS----DLE--------------KPDDGWAPAADV 263 (383)
Q Consensus 210 ~a~~~l~~~~~~----~~l~i~G~~~~~~~~----~~~~~~~~~~~~----~~~--------------~~v~~~~~~adi 263 (383)
.|+.+|+.++|. +.++-++..+..+.+ +..++++.+... |-. +++..+|+.||+
T Consensus 302 ~Afe~lL~~~Pe~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv 381 (486)
T COG0380 302 LAFERLLEEYPEWRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAADV 381 (486)
T ss_pred HHHHHHHHhChhhhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHhhhce
Confidence 999999988874 667777766554433 233344443332 111 344688899999
Q ss_pred EEecCCCCCCChHHHHHHHc----CCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHH
Q 043412 264 FVLPSRGEGWGRPLVEAMSM----GLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRL 339 (383)
Q Consensus 264 ~v~ps~~e~~~~~~~Ea~a~----G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ 339 (383)
++.++..+|+.++..|+.+| +-|.|.|...|....+.+ .++|+|- |.++++++|.+
T Consensus 382 ~lVtplrDGMNLvakEyVa~q~~~~G~LiLSeFaGaa~~L~~--AliVNP~------------------d~~~va~ai~~ 441 (486)
T COG0380 382 MLVTPLRDGMNLVAKEYVAAQRDKPGVLILSEFAGAASELRD--ALIVNPW------------------DTKEVADAIKR 441 (486)
T ss_pred eeeccccccccHHHHHHHHhhcCCCCcEEEeccccchhhhcc--CEeECCC------------------ChHHHHHHHHH
Confidence 99999999999999999998 347888888777776654 5555554 99999999999
Q ss_pred Hhc-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 043412 340 VVS-NVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIKD 377 (383)
Q Consensus 340 ll~-~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~ 377 (383)
.|+ .++++++.-+..++. ...++...++..+.+-+..
T Consensus 442 AL~m~~eEr~~r~~~~~~~-v~~~d~~~W~~~fl~~la~ 479 (486)
T COG0380 442 ALTMSLEERKERHEKLLKQ-VLTHDVARWANSFLDDLAQ 479 (486)
T ss_pred HhcCCHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHh
Confidence 998 455555555555554 4678999999998776654
No 106
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=99.34 E-value=7e-12 Score=124.95 Aligned_cols=283 Identities=12% Similarity=0.073 Sum_probs=179.1
Q ss_pred cEEEecCCCCCCCCcccccCCCCCCCCCCCcccccceeeeecCCCCHHHHHhcCCCCEEEEeChHHHHHHHh-----cCC
Q 043412 70 TVVICHSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETDRVSPEHVKRCNRMDFVWVPTDFHVSTFIR-----SGV 144 (383)
Q Consensus 70 DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~-----~~~ 144 (383)
|+|.+|..+....+.+++........++.-....-...++..-++...+.+.+-.||.|-..+...++.|.+ .|.
T Consensus 203 d~VWVhDYhL~llP~~LR~~~~~~~IgfFlHiPFPs~eifr~LP~r~eiL~glL~aDlIGFht~~yar~Fl~~~~r~lgl 282 (854)
T PLN02205 203 DFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGL 282 (854)
T ss_pred CEEEEeCchhhHHHHHHHhhCCCCcEEEEecCCCCChHHHhhCCcHHHHHHHHhcCCeEEecCHHHHHHHHHHHHHHhCC
Confidence 899999876655555544332111101111111111223333456677777789999999999999887764 232
Q ss_pred C---------------CCCeEEecCCCcCCCCCCCCCCCCccccC--CccccccCCCCCCCCcEEEEEeeccccccCHHH
Q 043412 145 D---------------PAKVVKIVQPVHVGFFDPVNCDPIDLASI--GKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDV 207 (383)
Q Consensus 145 ~---------------~~~i~vi~ngid~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ 207 (383)
. .-++.+.|-|||...|............. -+..++ .+++.+|+.+.|++..||+..
T Consensus 283 ~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~ilgVDrlD~~KGi~~ 356 (854)
T PLN02205 283 SYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEAKVKELIKQFC------DQDRIMLLGVDDMDIFKGISL 356 (854)
T ss_pred cccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcChhHHHHHHHHHHHhc------cCCCEEEEEccCcccccCHHH
Confidence 1 11355778899988775432221110000 011121 135789999999999999999
Q ss_pred HHHHHHHHhccCCCe----EEEEEeCCCCCCCchH----HHHHHHHhhC----C---CC-----------CccccccccC
Q 043412 208 LLKAYLEEFSKADGV----VLYLLTNPYHSGRDFG----NKIVNFVEDS----D---LE-----------KPDDGWAPAA 261 (383)
Q Consensus 208 ll~a~~~l~~~~~~~----~l~i~G~~~~~~~~~~----~~~~~~~~~~----~---~~-----------~~v~~~~~~a 261 (383)
=+.|+.++++++|+. .|+-+........+.. .++.+.+... | .. ++...+|+.|
T Consensus 357 kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~A 436 (854)
T PLN02205 357 KLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVVA 436 (854)
T ss_pred HHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHhc
Confidence 999999999998864 5666655433222222 3333333332 1 11 3345889999
Q ss_pred ceEEecCCCCCCChHHHHHHHcCCC-------------------EEEcCCCCccccccCCCceeeecccccccccCCCCc
Q 043412 262 DVFVLPSRGEGWGRPLVEAMSMGLP-------------------VIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKG 322 (383)
Q Consensus 262 di~v~ps~~e~~~~~~~Ea~a~G~P-------------------vI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g 322 (383)
|+++.++..+|+.++..|+.+|... +|.|...|....+. . +
T Consensus 437 Dv~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~L~--~------------------A 496 (854)
T PLN02205 437 ECCLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCSPSLS--G------------------A 496 (854)
T ss_pred cEEEeccccccccccchheeEEccCccccccccccccccCCCCceEeeeccchhHHhC--c------------------C
Confidence 9999999999999999999998642 44454444444332 1 3
Q ss_pred ccccCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 043412 323 HFWAEPSVDKLRALMRLVVSN-VDEAKAKGKQAREDMIQRFSPETVAGIVTDHIKDIL 379 (383)
Q Consensus 323 ~~~~~~~~~~la~~i~~ll~~-~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~~ 379 (383)
+++.|.|.++++++|.+.++- +++++..-+..+++ ..+++...+++.+.+-++++.
T Consensus 497 i~VNP~d~~~~a~ai~~AL~m~~~Er~~R~~~~~~~-v~~~d~~~W~~~fl~~l~~~~ 553 (854)
T PLN02205 497 IRVNPWNIDAVADAMDSALEMAEPEKQLRHEKHYRY-VSTHDVGYWARSFLQDLERTC 553 (854)
T ss_pred eEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhhCCHHHHHHHHHHHHHHHH
Confidence 455566999999999999994 44444444555555 467899999999888877664
No 107
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.33 E-value=3.6e-11 Score=109.59 Aligned_cols=263 Identities=12% Similarity=0.016 Sum_probs=134.8
Q ss_pred HHHHHHhhhcCCCccEEEecCCCCCCCCcccccCCCCCCCCCCCcccccceeeeecCCCCHHHHH-hcCCCCEEEEeChH
Q 043412 56 LAVELYNTECRTNETVVICHSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETDRVSPEHVK-RCNRMDFVWVPTDF 134 (383)
Q Consensus 56 ~~~~l~~~~~~~~pDiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ad~vi~~s~~ 134 (383)
...+..+++++++||+||++....+....+...+...+. + +++.+.......+ ..+.++.+++.-+.
T Consensus 79 ~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~-----~-------i~e~n~~~g~~nr~~~~~a~~v~~~f~~ 146 (352)
T PRK12446 79 GVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPV-----L-------LHESDMTPGLANKIALRFASKIFVTFEE 146 (352)
T ss_pred HHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCE-----E-------EECCCCCccHHHHHHHHhhCEEEEEccc
Confidence 344566788999999999986443222222222222222 1 1111112222222 24678888876543
Q ss_pred HHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHH-HHHHHH
Q 043412 135 HVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDV-LLKAYL 213 (383)
Q Consensus 135 ~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~-ll~a~~ 213 (383)
..+ +++++++.++.+++..+....... .....+++ ++++++++.+|.-...+.+.. +.+++.
T Consensus 147 ~~~-----~~~~~k~~~tG~Pvr~~~~~~~~~-----~~~~~~~l-------~~~~~~iLv~GGS~Ga~~in~~~~~~l~ 209 (352)
T PRK12446 147 AAK-----HLPKEKVIYTGSPVREEVLKGNRE-----KGLAFLGF-------SRKKPVITIMGGSLGAKKINETVREALP 209 (352)
T ss_pred hhh-----hCCCCCeEEECCcCCcccccccch-----HHHHhcCC-------CCCCcEEEEECCccchHHHHHHHHHHHH
Confidence 332 234468899999987654322111 00112222 345555555554333344433 333444
Q ss_pred HHhccCCCeEEEEEeCCCCCCCchHHHHHHH--HhhCCCC-CccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEc
Q 043412 214 EEFSKADGVVLYLLTNPYHSGRDFGNKIVNF--VEDSDLE-KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIAT 290 (383)
Q Consensus 214 ~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~--~~~~~~~-~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 290 (383)
.+. .+++++...+.. ...+..... ....++. +++..+|+.||++|.- +.++++.|++++|+|.|..
T Consensus 210 ~l~---~~~~vv~~~G~~----~~~~~~~~~~~~~~~~f~~~~m~~~~~~adlvIsr----~G~~t~~E~~~~g~P~I~i 278 (352)
T PRK12446 210 ELL---LKYQIVHLCGKG----NLDDSLQNKEGYRQFEYVHGELPDILAITDFVISR----AGSNAIFEFLTLQKPMLLI 278 (352)
T ss_pred hhc---cCcEEEEEeCCc----hHHHHHhhcCCcEEecchhhhHHHHHHhCCEEEEC----CChhHHHHHHHcCCCEEEE
Confidence 442 246666554431 222222111 1122443 6788999999999844 3578999999999999988
Q ss_pred CCCCccc-cccCCCc-eeeecccccccccCCCCccccc--CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHH
Q 043412 291 NWSGPTE-YLTEENG-YPLLVGRMSEVTEGPFKGHFWA--EPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPET 366 (383)
Q Consensus 291 ~~~g~~e-~v~~~~g-~~~~~~~~~~~~~~~~~g~~~~--~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~ 366 (383)
+...... --+..|. ++.+. +.|..+. ..+++.+.+++.++++|++.+++ ++ +.+....
T Consensus 279 P~~~~~~~~~Q~~Na~~l~~~----------g~~~~l~~~~~~~~~l~~~l~~ll~~~~~~~~---~~-----~~~~~~~ 340 (352)
T PRK12446 279 PLSKFASRGDQILNAESFERQ----------GYASVLYEEDVTVNSLIKHVEELSHNNEKYKT---AL-----KKYNGKE 340 (352)
T ss_pred cCCCCCCCchHHHHHHHHHHC----------CCEEEcchhcCCHHHHHHHHHHHHcCHHHHHH---HH-----HHcCCCC
Confidence 6532110 0000111 11110 1222222 22789999999999998876532 22 2233445
Q ss_pred HHHHHHHHHH
Q 043412 367 VAGIVTDHIK 376 (383)
Q Consensus 367 ~~~~~~~~~~ 376 (383)
.++++.+.+.
T Consensus 341 aa~~i~~~i~ 350 (352)
T PRK12446 341 AIQTIIDHIS 350 (352)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 108
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.32 E-value=1.9e-12 Score=106.36 Aligned_cols=151 Identities=14% Similarity=0.100 Sum_probs=83.6
Q ss_pred CCCCCCChhHHHHHHHHHHHhcccCCCceeeeecCCCcccch----------hhcCCChhhhhHHHHHHhhhcCCCccEE
Q 043412 3 PFLSGGGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQSLQ----------FWEGLPHHMRNLAVELYNTECRTNETVV 72 (383)
Q Consensus 3 p~~~~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~pDiV 72 (383)
.+...||.++++.+++++|.++|+...+ .+...++..... ...............+.+.+++.+||+|
T Consensus 7 ~~~~~GG~e~~~~~l~~~l~~~G~~v~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~DiV 84 (177)
T PF13439_consen 7 FLPNIGGAERVVLNLARALAKRGHEVTV--VSPGVKDPIEEELVKIFVKIPYPIRKRFLRSFFFMRRLRRLIKKEKPDIV 84 (177)
T ss_dssp -TTSSSHHHHHHHHHHHHHHHTT-EEEE--EESS-TTS-SSTEEEE---TT-SSTSS--HHHHHHHHHHHHHHHHT-SEE
T ss_pred cCCCCChHHHHHHHHHHHHHHCCCEEEE--EEcCCCccchhhccceeeeeecccccccchhHHHHHHHHHHHHHcCCCeE
Confidence 3567899999999999999999987654 333333322111 0111122344455678888888999999
Q ss_pred EecCCCCCCCCcccccCCCCCCCCCCCcccccceee----eecCCCC-HH-----HHHhcCCCCEEEEeChHHHHHHHhc
Q 043412 73 ICHSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTM----FETDRVS-PE-----HVKRCNRMDFVWVPTDFHVSTFIRS 142 (383)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~-----~~~~~~~ad~vi~~s~~~~~~~~~~ 142 (383)
|+|.....+....... ..+.+ ...++.+. +...... .. +....+.+|.++++|+..++.+.++
T Consensus 85 h~~~~~~~~~~~~~~~-~~~~v------~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~vS~~~~~~l~~~ 157 (177)
T PF13439_consen 85 HIHGPPAFWIALLACR-KVPIV------YTIHGPYFERRFLKSKLSPYSYLNFRIERKLYKKADRIIAVSESTKDELIKF 157 (177)
T ss_dssp ECCTTHCCCHHHHHHH-CSCEE------EEE-HHH--HHTTTTSCCCHHHHHHCTTHHHHCCSSEEEESSHHHHHHHHHH
T ss_pred EecccchhHHHHHhcc-CCCEE------EEeCCCcccccccccccchhhhhhhhhhhhHHhcCCEEEEECHHHHHHHHHh
Confidence 9997554333222111 22222 22222220 1111111 11 1122588999999999999999999
Q ss_pred CCCCCCeEEecCCCcCCCCC
Q 043412 143 GVDPAKVVKIVQPVHVGFFD 162 (383)
Q Consensus 143 ~~~~~~i~vi~ngid~~~~~ 162 (383)
|++++++.|||||+|.+.|.
T Consensus 158 ~~~~~ki~vI~ngid~~~F~ 177 (177)
T PF13439_consen 158 GIPPEKIHVIYNGIDTDRFR 177 (177)
T ss_dssp T--SS-EEE----B-CCCH-
T ss_pred CCcccCCEEEECCccHHHcC
Confidence 99999999999999998763
No 109
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=99.31 E-value=3.7e-11 Score=108.53 Aligned_cols=307 Identities=16% Similarity=0.141 Sum_probs=177.2
Q ss_pred hHHHHHHHHHHHhcccCCCceeeeecCCCc---------ccch------hhcCCC--hhhhhHHHHHHhhhcCCCccEEE
Q 043412 11 SSESWSYILALNEHVKNPRFKLAIEHHGDL---------QSLQ------FWEGLP--HHMRNLAVELYNTECRTNETVVI 73 (383)
Q Consensus 11 ~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~---------~~~~------~~~~~~--~~~~~~~~~l~~~~~~~~pDiV~ 73 (383)
..++-+++++|+++.....+ .+++ |+. .+.. +++.++ ...++...++.+.+...+||+|+
T Consensus 11 D~~ga~Li~~Lk~~~p~~~~-~GvG--G~~M~~~G~~~l~d~~~lsvmG~~Evl~~l~~~~~~~~~~~~~~~~~~pd~vI 87 (373)
T PF02684_consen 11 DLHGARLIRALKARDPDIEF-YGVG--GPRMQAAGVESLFDMEELSVMGFVEVLKKLPKLKRLFRKLVERIKEEKPDVVI 87 (373)
T ss_pred HHHHHHHHHHHHhhCCCcEE-EEEe--chHHHhCCCceecchHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 45788999999988653332 2222 111 1110 111111 13344556667777889999999
Q ss_pred ecCCCCCCCC--cccccCCCCCCCCCCCcccccce--eeeecCCCCHHHHHhcCCCCEEEEeChHHHHHHHhcCCCCCCe
Q 043412 74 CHSEPGAWYP--PLFDTLPCPPTPGYGDFMAVIGR--TMFETDRVSPEHVKRCNRMDFVWVPTDFHVSTFIRSGVDPAKV 149 (383)
Q Consensus 74 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~~~~~~~i 149 (383)
.-+.++..+. ..++....+.. ..+++.- |.|... +..+.-+.+|.+++.-++..+.+.+.|+ ++
T Consensus 88 lID~pgFNlrlak~lk~~~~~~~-----viyYI~PqvWAWr~~----R~~~i~~~~D~ll~ifPFE~~~y~~~g~---~~ 155 (373)
T PF02684_consen 88 LIDYPGFNLRLAKKLKKRGIPIK-----VIYYISPQVWAWRPG----RAKKIKKYVDHLLVIFPFEPEFYKKHGV---PV 155 (373)
T ss_pred EeCCCCccHHHHHHHHHhCCCce-----EEEEECCceeeeCcc----HHHHHHHHHhheeECCcccHHHHhccCC---Ce
Confidence 9887663221 11112221111 2333333 333322 2333346689999999999999999986 68
Q ss_pred EEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeec-ccc-ccCHHHHHHHHHHHhccCCCeEEEEE
Q 043412 150 VKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFK-WEY-RKGWDVLLKAYLEEFSKADGVVLYLL 227 (383)
Q Consensus 150 ~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~-~~~-~K~~~~ll~a~~~l~~~~~~~~l~i~ 227 (383)
..++|++=. ...+... ....+... +. +++..+.+..|+ -.+ .+.+..+++++.++.+++|++++++.
T Consensus 156 ~~VGHPl~d-~~~~~~~---~~~~~~~~-l~------~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp 224 (373)
T PF02684_consen 156 TYVGHPLLD-EVKPEPD---RAEAREKL-LD------PDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVP 224 (373)
T ss_pred EEECCcchh-hhccCCC---HHHHHHhc-CC------CCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 899997522 1112111 11111122 22 345556666663 333 45668889999999999999999988
Q ss_pred eCCCCCCCchHHHHHHHHhhCCCC-------CccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCC-CCccccc
Q 043412 228 TNPYHSGRDFGNKIVNFVEDSDLE-------KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNW-SGPTEYL 299 (383)
Q Consensus 228 G~~~~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~-~g~~e~v 299 (383)
... ....+.+.+.....+.. ++-...++.||+.+..| |++.+|++.+|+|.|+..- +.....+
T Consensus 225 ~a~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~al~~S-----GTaTLE~Al~g~P~Vv~Yk~~~lt~~i 295 (373)
T PF02684_consen 225 VAP----EVHEELIEEILAEYPPDVSIVIIEGESYDAMAAADAALAAS-----GTATLEAALLGVPMVVAYKVSPLTYFI 295 (373)
T ss_pred cCC----HHHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcchhhcC-----CHHHHHHHHhCCCEEEEEcCcHHHHHH
Confidence 754 12223344444443321 34567889999999877 8999999999999777654 3332222
Q ss_pred cCCCceeeecccccccccCC-CCcc-cccCCCHHHHHHHHHHHhcCHHHHHHHHHH
Q 043412 300 TEENGYPLLVGRMSEVTEGP-FKGH-FWAEPSVDKLRALMRLVVSNVDEAKAKGKQ 353 (383)
Q Consensus 300 ~~~~g~~~~~~~~~~~~~~~-~~g~-~~~~~~~~~la~~i~~ll~~~~~~~~~~~~ 353 (383)
... -+-++.-.+||+.-+. .-.. +-+..+++.+++++..+++|++.++.....
T Consensus 296 ak~-lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~~~~~~ 350 (373)
T PF02684_consen 296 AKR-LVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEKRKKQKEL 350 (373)
T ss_pred HHH-hhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 211 0111222244444333 1122 222339999999999999999875444333
No 110
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=99.22 E-value=5.9e-10 Score=98.71 Aligned_cols=313 Identities=15% Similarity=0.145 Sum_probs=192.5
Q ss_pred HHHHHHHhcccCCCceeeeecCCCcccc-hhhc--C----------------CChhhhhHHHHHHhhhcCCCccEEEecC
Q 043412 16 SYILALNEHVKNPRFKLAIEHHGDLQSL-QFWE--G----------------LPHHMRNLAVELYNTECRTNETVVICHS 76 (383)
Q Consensus 16 ~l~~~l~~~g~~~~~~~~~~~~~~~~~~-~~~~--~----------------~~~~~~~~~~~l~~~~~~~~pDiV~~~~ 76 (383)
-+++++.+++..+.+.+..++|.+.+-. .+.+ + +.....+.+..+.+++.+.+||+|.+|.
T Consensus 21 pli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~~~vl~~~kPD~VlVhG 100 (383)
T COG0381 21 PLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEGLSKVLEEEKPDLVLVHG 100 (383)
T ss_pred HHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 4678888887666666777777642111 1111 1 1122344567788889999999999998
Q ss_pred CCCCCCC-cccccCCCCCCCCCCCcccc-cceeeeecCCCCHHHHHhc--CCCCEEEEeChHHHHHHHhcCCCCCCeEEe
Q 043412 77 EPGAWYP-PLFDTLPCPPTPGYGDFMAV-IGRTMFETDRVSPEHVKRC--NRMDFVWVPTDFHVSTFIRSGVDPAKVVKI 152 (383)
Q Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi 152 (383)
...+-++ ++.+.....++ .+. -|...+.. .++....+.+ .-+|.-+++++..++.+.+-|.++++|.++
T Consensus 101 DT~t~lA~alaa~~~~IpV------~HvEAGlRt~~~-~~PEE~NR~l~~~~S~~hfapte~ar~nLl~EG~~~~~Ifvt 173 (383)
T COG0381 101 DTNTTLAGALAAFYLKIPV------GHVEAGLRTGDL-YFPEEINRRLTSHLSDLHFAPTEIARKNLLREGVPEKRIFVT 173 (383)
T ss_pred CcchHHHHHHHHHHhCCce------EEEecccccCCC-CCcHHHHHHHHHHhhhhhcCChHHHHHHHHHcCCCccceEEe
Confidence 7654333 22222111111 111 11111111 1466555553 558888999999999999999999999999
Q ss_pred cCCC-cCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccc-cCHHHHHHHHHHHhccCCCeEEEEEeCC
Q 043412 153 VQPV-HVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYR-KGWDVLLKAYLEEFSKADGVVLYLLTNP 230 (383)
Q Consensus 153 ~ngi-d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~-K~~~~ll~a~~~l~~~~~~~~l~i~G~~ 230 (383)
+|.+ |.-........ ........+ ++ ..+++.+++..-|-+.. +++..+++++.++..+++++.++.---.
T Consensus 174 Gnt~iDal~~~~~~~~-~~~~~~~~~-~~-----~~~~~~iLvT~HRreN~~~~~~~i~~al~~i~~~~~~~~viyp~H~ 246 (383)
T COG0381 174 GNTVIDALLNTRDRVL-EDSKILAKG-LD-----DKDKKYILVTAHRRENVGEPLEEICEALREIAEEYPDVIVIYPVHP 246 (383)
T ss_pred CChHHHHHHHHHhhhc-cchhhHHhh-hc-----cccCcEEEEEcchhhcccccHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 9964 32111100000 000000000 11 23345666665555433 8899999999999999988888876533
Q ss_pred CCCCCchHHHHHHHH-hhCCCCC-----------ccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCC-CCccc
Q 043412 231 YHSGRDFGNKIVNFV-EDSDLEK-----------PDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNW-SGPTE 297 (383)
Q Consensus 231 ~~~~~~~~~~~~~~~-~~~~~~~-----------~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~-~g~~e 297 (383)
. ..+++.. ..++-.+ +...++..|-+++--| |...=||-..|+||++-.. ..-+|
T Consensus 247 ---~----~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~iltDS-----GgiqEEAp~lg~Pvl~lR~~TERPE 314 (383)
T COG0381 247 ---R----PRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFLILTDS-----GGIQEEAPSLGKPVLVLRDTTERPE 314 (383)
T ss_pred ---C----hhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceEEEecC-----CchhhhHHhcCCcEEeeccCCCCcc
Confidence 1 2333332 2333222 2235557775555333 5567899999999998866 56777
Q ss_pred cccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 043412 298 YLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIKD 377 (383)
Q Consensus 298 ~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~ 377 (383)
.++.+.-.++.. +.+.+.+++.+++++++.+++|+.. ...|.-....+++.+++..
T Consensus 315 ~v~agt~~lvg~-------------------~~~~i~~~~~~ll~~~~~~~~m~~~-----~npYgdg~as~rIv~~l~~ 370 (383)
T COG0381 315 GVEAGTNILVGT-------------------DEENILDAATELLEDEEFYERMSNA-----KNPYGDGNASERIVEILLN 370 (383)
T ss_pred ceecCceEEeCc-------------------cHHHHHHHHHHHhhChHHHHHHhcc-----cCCCcCcchHHHHHHHHHH
Confidence 777666666654 7899999999999999999988764 4566666677777777664
Q ss_pred H
Q 043412 378 I 378 (383)
Q Consensus 378 ~ 378 (383)
-
T Consensus 371 ~ 371 (383)
T COG0381 371 Y 371 (383)
T ss_pred H
Confidence 3
No 111
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.13 E-value=5e-10 Score=98.94 Aligned_cols=267 Identities=14% Similarity=0.059 Sum_probs=159.4
Q ss_pred hHHHHHHhhhcCCCccEEEecCCCCCCCCcc-cccCCCCCCCCCCCcccccc--eeeeecCCCCHHHHHhcCCCCEEEEe
Q 043412 55 NLAVELYNTECRTNETVVICHSEPGAWYPPL-FDTLPCPPTPGYGDFMAVIG--RTMFETDRVSPEHVKRCNRMDFVWVP 131 (383)
Q Consensus 55 ~~~~~l~~~~~~~~pDiV~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ad~vi~~ 131 (383)
+...++.+.+...+||++++-+.++..+.-. ......+.. +. .+++. -|.|...+ .....+.+|.+++.
T Consensus 72 k~~~~~~~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p~i---~i-ihYV~PsVWAWr~~R----a~~i~~~~D~lLai 143 (381)
T COG0763 72 KIRRELVRYILANKPDVLILIDSPDFNLRVAKKLRKAGPKI---KI-IHYVSPSVWAWRPKR----AVKIAKYVDHLLAI 143 (381)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCchHHHHHHHHhCCCC---Ce-EEEECcceeeechhh----HHHHHHHhhHeeee
Confidence 3445555666688999999998766332111 111112111 11 22222 34444322 34446789999999
Q ss_pred ChHHHHHHHhcCCCCCCeEEecCCCcCC-CCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeec-ccc-ccCHHHH
Q 043412 132 TDFHVSTFIRSGVDPAKVVKIVQPVHVG-FFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFK-WEY-RKGWDVL 208 (383)
Q Consensus 132 s~~~~~~~~~~~~~~~~i~vi~ngid~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~-~~~-~K~~~~l 208 (383)
-++..+.+.++|.+ ++.|+|+.-.. .+.+.+.. .+.++++. .+.+.+.+..|+ -.+ .+....+
T Consensus 144 lPFE~~~y~k~g~~---~~yVGHpl~d~i~~~~~r~~-----ar~~l~~~------~~~~~lalLPGSR~sEI~rl~~~f 209 (381)
T COG0763 144 LPFEPAFYDKFGLP---CTYVGHPLADEIPLLPDREA-----AREKLGID------ADEKTLALLPGSRRSEIRRLLPPF 209 (381)
T ss_pred cCCCHHHHHhcCCC---eEEeCChhhhhccccccHHH-----HHHHhCCC------CCCCeEEEecCCcHHHHHHHHHHH
Confidence 99999999999874 78888875322 12222211 12333332 455666666663 222 4567888
Q ss_pred HHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHH-HHHhhCC--CC-----CccccccccCceEEecCCCCCCChHHHHH
Q 043412 209 LKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIV-NFVEDSD--LE-----KPDDGWAPAADVFVLPSRGEGWGRPLVEA 280 (383)
Q Consensus 209 l~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~-~~~~~~~--~~-----~~v~~~~~~adi~v~ps~~e~~~~~~~Ea 280 (383)
.+++.++..++|+.++++--.. ...+.+. +...... .. .+-...+..||+.+..| |++.+|+
T Consensus 210 ~~a~~~l~~~~~~~~~vlp~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~al~aS-----GT~tLE~ 279 (381)
T COG0763 210 VQAAQELKARYPDLKFVLPLVN-----AKYRRIIEEALKWEVAGLSLILIDGEKRKAFAAADAALAAS-----GTATLEA 279 (381)
T ss_pred HHHHHHHHhhCCCceEEEecCc-----HHHHHHHHHHhhccccCceEEecCchHHHHHHHhhHHHHhc-----cHHHHHH
Confidence 9999999999999999998754 2223332 2222222 11 23356789999988777 8999999
Q ss_pred HHcCCCEEEcCCC-CccccccCCCceeeecccccccccCCCCc--ccccCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 043412 281 MSMGLPVIATNWS-GPTEYLTEENGYPLLVGRMSEVTEGPFKG--HFWAEPSVDKLRALMRLVVSNVDEAKAKGKQA 354 (383)
Q Consensus 281 ~a~G~PvI~~~~~-g~~e~v~~~~g~~~~~~~~~~~~~~~~~g--~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a 354 (383)
+.+|+|.|++--. ...-.+-. .-+.++.-.+||+.-+..-. .+-+...++.+++++..++.|...+.++.+..
T Consensus 280 aL~g~P~Vv~Yk~~~it~~iak-~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~ 355 (381)
T COG0763 280 ALAGTPMVVAYKVKPITYFIAK-RLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKF 355 (381)
T ss_pred HHhCCCEEEEEeccHHHHHHHH-HhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHH
Confidence 9999998887543 33322222 11222223355555443111 12223489999999999999996555554443
No 112
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=99.10 E-value=6.2e-09 Score=96.04 Aligned_cols=175 Identities=14% Similarity=0.122 Sum_probs=114.5
Q ss_pred CCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC-Ccc--------
Q 043412 184 MNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE-KPD-------- 254 (383)
Q Consensus 184 ~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~-~~v-------- 254 (383)
++++++.++|+++.+ ..|--+..++++.+++++.|+.+|++...+. ...+.+.+.+...|+. +++
T Consensus 279 ~gLp~d~vvF~~fn~--~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~----~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~ 352 (468)
T PF13844_consen 279 YGLPEDAVVFGSFNN--LFKISPETLDLWARILKAVPNSRLWLLRFPA----SGEARLRRRFAAHGVDPDRIIFSPVAPR 352 (468)
T ss_dssp GT--SSSEEEEE-S---GGG--HHHHHHHHHHHHHSTTEEEEEEETST----THHHHHHHHHHHTTS-GGGEEEEE---H
T ss_pred cCCCCCceEEEecCc--cccCCHHHHHHHHHHHHhCCCcEEEEeeCCH----HHHHHHHHHHHHcCCChhhEEEcCCCCH
Confidence 446899999999886 4577889999999999999999998886542 3457788888899987 222
Q ss_pred ---ccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHH
Q 043412 255 ---DGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVD 331 (383)
Q Consensus 255 ---~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~ 331 (383)
...++.+|+++-|..+ +.+.+.+||+++|+|||+-....+..=+. .+++-..+ +++ +-..|.+
T Consensus 353 ~ehl~~~~~~DI~LDT~p~-nG~TTt~dALwmGVPvVTl~G~~~~sR~~--aSiL~~lG-l~E----------lIA~s~~ 418 (468)
T PF13844_consen 353 EEHLRRYQLADICLDTFPY-NGGTTTLDALWMGVPVVTLPGETMASRVG--ASILRALG-LPE----------LIADSEE 418 (468)
T ss_dssp HHHHHHGGG-SEEE--SSS---SHHHHHHHHHT--EEB---SSGGGSHH--HHHHHHHT--GG----------GB-SSHH
T ss_pred HHHHHHhhhCCEEeeCCCC-CCcHHHHHHHHcCCCEEeccCCCchhHHH--HHHHHHcC-Cch----------hcCCCHH
Confidence 2456889999987544 34789999999999999987543322211 01111000 111 1112899
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHH
Q 043412 332 KLRALMRLVVSNVDEAKAKGKQAREDMIQ--RFSPETVAGIVTDHIKDI 378 (383)
Q Consensus 332 ~la~~i~~ll~~~~~~~~~~~~a~~~~~~--~~s~~~~~~~~~~~~~~~ 378 (383)
++.+...++.+|++.++++...-++...+ -|+-..+++.+++.|+++
T Consensus 419 eYv~~Av~La~D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~m 467 (468)
T PF13844_consen 419 EYVEIAVRLATDPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQM 467 (468)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999998888776543 599999999999999876
No 113
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.03 E-value=4.6e-09 Score=99.14 Aligned_cols=271 Identities=14% Similarity=0.122 Sum_probs=155.5
Q ss_pred hhHHHHHHhhhcCCCccEEEecCCCCCCCC--cccccCCCCCCCCCCCcccccce--eeeecCCCCHHHHHhcCCCCEEE
Q 043412 54 RNLAVELYNTECRTNETVVICHSEPGAWYP--PLFDTLPCPPTPGYGDFMAVIGR--TMFETDRVSPEHVKRCNRMDFVW 129 (383)
Q Consensus 54 ~~~~~~l~~~~~~~~pDiV~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ad~vi 129 (383)
.+...++.+.+++++||++++-+.++..+. ...+.... ..+ ..++..- |.|... +..+.-+.+|.++
T Consensus 296 ~~~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi----~ip-viyYVsPqVWAWR~~----Rikki~k~vD~ll 366 (608)
T PRK01021 296 WYRYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGY----KGK-IVHYVCPSIWAWRPK----RKTILEKYLDLLL 366 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCC----CCC-EEEEECccceeeCcc----hHHHHHHHhhhhe
Confidence 445566777778899999999877663321 11112211 001 1233333 334322 3334446789999
Q ss_pred EeChHHHHHHHhcCCCCCCeEEecCCC-cCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeec-ccc-ccCHH
Q 043412 130 VPTDFHVSTFIRSGVDPAKVVKIVQPV-HVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFK-WEY-RKGWD 206 (383)
Q Consensus 130 ~~s~~~~~~~~~~~~~~~~i~vi~ngi-d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~-~~~-~K~~~ 206 (383)
+.-++..+.+++.|+ +++.++|+. |. ...... ....+.+.++. +++..+-+..|+ -.+ .+...
T Consensus 367 ~IfPFE~~~y~~~gv---~v~yVGHPL~d~--i~~~~~---~~~~r~~lgl~------~~~~iIaLLPGSR~~EI~rllP 432 (608)
T PRK01021 367 LILPFEQNLFKDSPL---RTVYLGHPLVET--ISSFSP---NLSWKEQLHLP------SDKPIVAAFPGSRRGDILRNLT 432 (608)
T ss_pred ecCccCHHHHHhcCC---CeEEECCcHHhh--cccCCC---HHHHHHHcCCC------CCCCEEEEECCCCHHHHHHHHH
Confidence 999999999999887 688999986 32 111111 11112222321 244566677773 323 45678
Q ss_pred HHHHHHH--HHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCC-----C-C-ccccccccCceEEecCCCCCCChHH
Q 043412 207 VLLKAYL--EEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDL-----E-K-PDDGWAPAADVFVLPSRGEGWGRPL 277 (383)
Q Consensus 207 ~ll~a~~--~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~-----~-~-~v~~~~~~adi~v~ps~~e~~~~~~ 277 (383)
.+++|++ .+. ++.++++.... ....+.+++.++..+. . + +-..+++.||+.+..| |.+.
T Consensus 433 v~l~aa~~~~l~---~~l~fvvp~a~----~~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~aLaaS-----GTaT 500 (608)
T PRK01021 433 IQVQAFLASSLA---STHQLLVSSAN----PKYDHLILEVLQQEGCLHSHIVPSQFRYELMRECDCALAKC-----GTIV 500 (608)
T ss_pred HHHHHHHHHHhc---cCeEEEEecCc----hhhHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCeeeecC-----CHHH
Confidence 8888887 443 25777775432 1234556665544332 1 2 2367889999999887 8999
Q ss_pred HHHHHcCCCEEEcCC-CCccccccCC-CceeeecccccccccCC-CCcccc---cCCCHHHHHHHHHHHhcCHHHHHHHH
Q 043412 278 VEAMSMGLPVIATNW-SGPTEYLTEE-NGYPLLVGRMSEVTEGP-FKGHFW---AEPSVDKLRALMRLVVSNVDEAKAKG 351 (383)
Q Consensus 278 ~Ea~a~G~PvI~~~~-~g~~e~v~~~-~g~~~~~~~~~~~~~~~-~~g~~~---~~~~~~~la~~i~~ll~~~~~~~~~~ 351 (383)
+|++.+|+|.|+.-- +.....+... -...++.-.+||+.-+. .--.+. ++.+++.+++++ +++.|++.++++.
T Consensus 501 LEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~ 579 (608)
T PRK01021 501 LETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQK 579 (608)
T ss_pred HHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHH
Confidence 999999999877644 3333322211 00001222234444332 112222 234899999996 8888988777776
Q ss_pred HHHHHHHHhc
Q 043412 352 KQAREDMIQR 361 (383)
Q Consensus 352 ~~a~~~~~~~ 361 (383)
+.-.+ +.+.
T Consensus 580 ~~l~~-lr~~ 588 (608)
T PRK01021 580 DACRD-LYQA 588 (608)
T ss_pred HHHHH-HHHH
Confidence 66544 3443
No 114
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.6e-07 Score=85.29 Aligned_cols=178 Identities=13% Similarity=0.103 Sum_probs=125.0
Q ss_pred CCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC-Cc-----------
Q 043412 186 TSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE-KP----------- 253 (383)
Q Consensus 186 ~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~-~~----------- 253 (383)
++++.++|+++++ ..|-...+++.+.++.+..|+=.|++.|+| .+++....+++++++.|+. ++
T Consensus 426 lp~~avVf~c~~n--~~K~~pev~~~wmqIL~~vP~Svl~L~~~~--~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~ 501 (620)
T COG3914 426 LPEDAVVFCCFNN--YFKITPEVFALWMQILSAVPNSVLLLKAGG--DDAEINARLRDLAEREGVDSERLRFLPPAPNED 501 (620)
T ss_pred CCCCeEEEEecCC--cccCCHHHHHHHHHHHHhCCCcEEEEecCC--CcHHHHHHHHHHHHHcCCChhheeecCCCCCHH
Confidence 5788899888886 668788889999999999999999999987 4567789999999999986 22
Q ss_pred cccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHH
Q 043412 254 DDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKL 333 (383)
Q Consensus 254 v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 333 (383)
-...|..||+++-+.-+ +...+..||+.+|+||++-.......-+ ++-++..-.+|+..-+ +.++.
T Consensus 502 h~a~~~iADlvLDTyPY-~g~TTa~daLwm~vPVlT~~G~~FasR~---~~si~~~agi~e~vA~----------s~~dY 567 (620)
T COG3914 502 HRARYGIADLVLDTYPY-GGHTTASDALWMGVPVLTRVGEQFASRN---GASIATNAGIPELVAD----------SRADY 567 (620)
T ss_pred HHHhhchhheeeecccC-CCccchHHHHHhcCceeeeccHHHHHhh---hHHHHHhcCCchhhcC----------CHHHH
Confidence 24667999999976544 3467899999999999987542111100 0101110011111111 67777
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHhc
Q 043412 334 RALMRLVVSNVDEAKAKGKQAREDMIQ--RFSPETVAGIVTDHIKDILSS 381 (383)
Q Consensus 334 a~~i~~ll~~~~~~~~~~~~a~~~~~~--~~s~~~~~~~~~~~~~~~~~~ 381 (383)
.+.-..+-.|...+++....-+..... -|+.+.+++++..+|.++.++
T Consensus 568 V~~av~~g~dral~q~~r~~l~~~r~tspL~d~~~far~le~~y~~M~~~ 617 (620)
T COG3914 568 VEKAVAFGSDRALRQQVRAELKRSRQTSPLFDPKAFARKLETLYWGMWSE 617 (620)
T ss_pred HHHHHHhcccHHHHHhhHHHHHhccccCcccCHHHHHHHHHHHHHHHHHh
Confidence 777777777776666655444333233 699999999999999988754
No 115
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=98.93 E-value=3.7e-11 Score=96.87 Aligned_cols=140 Identities=19% Similarity=0.128 Sum_probs=71.3
Q ss_pred CChhHHHHHHHHHHHhcccCCCceeeeecCCCcccch-----hhcC--C-----ChhhhhHHHHHHhhh--cCCCccEEE
Q 043412 8 GGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQSLQ-----FWEG--L-----PHHMRNLAVELYNTE--CRTNETVVI 73 (383)
Q Consensus 8 ~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~-----~~~~--~-----~~~~~~~~~~l~~~~--~~~~pDiV~ 73 (383)
||.++++.+++++|.++|+...+ ............ .+.. + ..........+.+++ ++.+||+||
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Dvv~ 78 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTV--VTPQPDPEDDEEEEDGVRVHRLPLPRRPWPLRLLRFLRRLRRLLAARRERPDVVH 78 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEE--EEE---GGG-SEEETTEEEEEE--S-SSSGGGHCCHHHHHHHHCHHCT---SEEE
T ss_pred CCHHHHHHHHHHHHHHCCCEEEE--EecCCCCcccccccCCceEEeccCCccchhhhhHHHHHHHHHHHhhhccCCeEEE
Confidence 89999999999999999986553 222222211100 0001 1 112344567788888 899999999
Q ss_pred ecCCCCCCCCcccc-cCCCCCCCCCCCcccccceeeeecCCCCH-----HHHHhcCCCCEEEEeChHHHHHHHhcCCCCC
Q 043412 74 CHSEPGAWYPPLFD-TLPCPPTPGYGDFMAVIGRTMFETDRVSP-----EHVKRCNRMDFVWVPTDFHVSTFIRSGVDPA 147 (383)
Q Consensus 74 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ad~vi~~s~~~~~~~~~~~~~~~ 147 (383)
+|+....+...+.. ....+.+ ...++........+.. .....++.||.++++|+..++.+.+++.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~p~v------~~~h~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~l~~~g~~~~ 152 (160)
T PF13579_consen 79 AHSPTAGLVAALARRRRGIPLV------VTVHGTLFRRGSRWKRRLYRWLERRLLRRADRVIVVSEAMRRYLRRYGVPPD 152 (160)
T ss_dssp EEHHHHHHHHHHHHHHHT--EE------EE-SS-T------HHHHHHHHHHHHHHHH-SEEEESSHHHHHHHHHH---GG
T ss_pred ecccchhHHHHHHHHccCCcEE------EEECCCchhhccchhhHHHHHHHHHHHhcCCEEEECCHHHHHHHHHhCCCCC
Confidence 99743222222222 1222322 2222221111111111 1123368899999999999999999999999
Q ss_pred CeEEecCC
Q 043412 148 KVVKIVQP 155 (383)
Q Consensus 148 ~i~vi~ng 155 (383)
++.|||||
T Consensus 153 ri~vipnG 160 (160)
T PF13579_consen 153 RIHVIPNG 160 (160)
T ss_dssp GEEE----
T ss_pred cEEEeCcC
Confidence 99999997
No 116
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.85 E-value=1.6e-08 Score=92.88 Aligned_cols=266 Identities=12% Similarity=0.105 Sum_probs=140.6
Q ss_pred hHHHHHHhhhcCCCccEEEecCCCCCCCC-cccccCCCCCCCCCCCcccccceeeeecCCCCHHHHHh-c-CCCCEEEEe
Q 043412 55 NLAVELYNTECRTNETVVICHSEPGAWYP-PLFDTLPCPPTPGYGDFMAVIGRTMFETDRVSPEHVKR-C-NRMDFVWVP 131 (383)
Q Consensus 55 ~~~~~l~~~~~~~~pDiV~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~ad~vi~~ 131 (383)
.....+.+++.+++||+|+++.....-++ ++.+.....++ .+..+.. +.... .....+. . +.++..+++
T Consensus 80 ~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv------~HveaG~-rs~~~-~eE~~r~~i~~la~l~f~~ 151 (365)
T TIGR03568 80 LTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPI------AHIHGGE-VTEGA-IDESIRHAITKLSHLHFVA 151 (365)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcE------EEEECCc-cCCCC-chHHHHHHHHHHHhhccCC
Confidence 34577888899999999999975532211 11111111111 1111110 00011 1222222 1 456888899
Q ss_pred ChHHHHHHHhcCCCCCCeEEecC-CCcCCCCCCCCCCCCccccCCccccccCCCCCC-CCcEEEEEeeccc--c---ccC
Q 043412 132 TDFHVSTFIRSGVDPAKVVKIVQ-PVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTS-SKEFVFLSVFKWE--Y---RKG 204 (383)
Q Consensus 132 s~~~~~~~~~~~~~~~~i~vi~n-gid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~i~~~g~~~--~---~K~ 204 (383)
++..++.+.+.|.+++++.++.| ++|.-....... ......++++ + ++.++++..-+-. . .+.
T Consensus 152 t~~~~~~L~~eg~~~~~i~~tG~~~iD~l~~~~~~~---~~~~~~~lgl-------~~~~~~vlvt~Hp~~~~~~~~~~~ 221 (365)
T TIGR03568 152 TEEYRQRVIQMGEDPDRVFNVGSPGLDNILSLDLLS---KEELEEKLGI-------DLDKPYALVTFHPVTLEKESAEEQ 221 (365)
T ss_pred CHHHHHHHHHcCCCCCcEEEECCcHHHHHHhhhccC---HHHHHHHhCC-------CCCCCEEEEEeCCCcccccCchHH
Confidence 99999999999998889999988 555432211111 1111122222 2 2345444443322 2 233
Q ss_pred HHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhC-CCC-------CccccccccCceEEecCCCCCCChH
Q 043412 205 WDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDS-DLE-------KPDDGWAPAADVFVLPSRGEGWGRP 276 (383)
Q Consensus 205 ~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~-~~~-------~~v~~~~~~adi~v~ps~~e~~~~~ 276 (383)
+..+++++.++ ..++.+++-..+ +......+.+.++.... ++. .++..+++.|++++.-|. | .
T Consensus 222 l~~li~~L~~~---~~~~~vi~P~~~-p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~vitdSS----g-g 292 (365)
T TIGR03568 222 IKELLKALDEL---NKNYIFTYPNAD-AGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADAVIGNSS----S-G 292 (365)
T ss_pred HHHHHHHHHHh---ccCCEEEEeCCC-CCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCEEEEcCh----h-H
Confidence 44555555443 224433221111 11222344455543211 111 334578899999995442 2 3
Q ss_pred HHHHHHcCCCEEEcCCCCccccccCC-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 043412 277 LVEAMSMGLPVIATNWSGPTEYLTEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAR 355 (383)
Q Consensus 277 ~~Ea~a~G~PvI~~~~~g~~e~v~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~ 355 (383)
+.||.++|+|+|+- +..+|.+..+ |.+++.. |++++.+++.++ .+++.+..+..
T Consensus 293 i~EA~~lg~Pvv~l--~~R~e~~~~g~nvl~vg~-------------------~~~~I~~a~~~~-~~~~~~~~~~~--- 347 (365)
T TIGR03568 293 IIEAPSFGVPTINI--GTRQKGRLRADSVIDVDP-------------------DKEEIVKAIEKL-LDPAFKKSLKN--- 347 (365)
T ss_pred HHhhhhcCCCEEee--cCCchhhhhcCeEEEeCC-------------------CHHHHHHHHHHH-hChHHHHHHhh---
Confidence 38999999999954 4566666654 4454543 899999999995 44443333211
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 043412 356 EDMIQRFSPETVAGIVTDH 374 (383)
Q Consensus 356 ~~~~~~~s~~~~~~~~~~~ 374 (383)
....|...+.++++.++
T Consensus 348 --~~~pygdg~as~rI~~~ 364 (365)
T TIGR03568 348 --VKNPYGDGNSSERIIEI 364 (365)
T ss_pred --CCCCCCCChHHHHHHHh
Confidence 23456666677776654
No 117
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.83 E-value=3.4e-07 Score=80.76 Aligned_cols=212 Identities=14% Similarity=0.108 Sum_probs=145.7
Q ss_pred cCCCCEEEEeChHH-HHHHHh-cCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeecc
Q 043412 122 CNRMDFVWVPTDFH-VSTFIR-SGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKW 199 (383)
Q Consensus 122 ~~~ad~vi~~s~~~-~~~~~~-~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~ 199 (383)
+.-.|.|++.++.. ++.+.+ .+. .++..++.++|.+.+.+.++... -.--+.++|+.
T Consensus 136 l~~fd~v~~~g~~l~~~~yyq~~~~--~~~~~~~~a~d~~~~~~i~~da~-------------------~~~dL~~ign~ 194 (373)
T COG4641 136 LFIFDNVLSFGGGLVANKYYQEGGA--RNCYYLPWAVDDSLFHPIPPDAS-------------------YDVDLNLIGNP 194 (373)
T ss_pred cchhhhhhhccchHHHHHHHHhhcc--cceeccCccCCchhcccCCcccc-------------------ceeeeEEecCC
Confidence 34456677777766 666664 433 37889999999999988764321 12347777865
Q ss_pred ccccCHHHHHHHHHHHhcc-----CCCeEEEEEeCCCCCC--CchHHHHHHHHhhCCCCCccccccccCceEEecCCC--
Q 043412 200 EYRKGWDVLLKAYLEEFSK-----ADGVVLYLLTNPYHSG--RDFGNKIVNFVEDSDLEKPDDGWAPAADVFVLPSRG-- 270 (383)
Q Consensus 200 ~~~K~~~~ll~a~~~l~~~-----~~~~~l~i~G~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~adi~v~ps~~-- 270 (383)
.+. ..+.++++..+ .-+-++.+.|...+.+ ......-.+.+..+...+.+...++..|+.+.-++.
T Consensus 195 ~pD-----r~e~~ke~~~~ps~kl~v~rr~~~~g~~y~~~~~~~~~~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~ 269 (373)
T COG4641 195 YPD-----RVEEIKEFFVEPSFKLMVDRRFYVLGPRYPDDIWGRTWEPNVQYIGYYNPKDGVPNAFKRDDVTLNINRASI 269 (373)
T ss_pred Ccc-----HHHHHHHHhhccchhhhccceeeecCCccchhhhcccccchhhhhhccCccchhhhcccccceeeeecHHHH
Confidence 443 23333332221 1134566666552211 111122334555555556677788888887766542
Q ss_pred -CC---CChHHHHHHHcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHH
Q 043412 271 -EG---WGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDE 346 (383)
Q Consensus 271 -e~---~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~ 346 (383)
++ +.+-+.|+++||.|.|++...+...++.++.-+++-. |..++.+.++.++..++.
T Consensus 270 ~~~l~~~~~RvFeiagc~~~liT~~~~~~e~~f~pgk~~iv~~-------------------d~kdl~~~~~yll~h~~e 330 (373)
T COG4641 270 ANALFSPTNRVFEIAGCGGFLITDYWKDLEKFFKPGKDIIVYQ-------------------DSKDLKEKLKYLLNHPDE 330 (373)
T ss_pred HhhcCCchhhHHHHhhcCCccccccHHHHHHhcCCchheEEec-------------------CHHHHHHHHHHHhcCcch
Confidence 22 3788999999999999999998888888865544442 899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 043412 347 AKAKGKQAREDMIQRFSPETVAGIVTDHIKDI 378 (383)
Q Consensus 347 ~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~ 378 (383)
++++++.+.+.+...|+.+.-+..+.+....+
T Consensus 331 rkeiae~~ye~V~~~ht~~~r~~~~~~~i~sI 362 (373)
T COG4641 331 RKEIAECAYERVLARHTYEERIFKLLNEIASI 362 (373)
T ss_pred HHHHHHhhHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99999999999999999999988877777653
No 118
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.77 E-value=5e-09 Score=95.12 Aligned_cols=275 Identities=11% Similarity=0.106 Sum_probs=149.8
Q ss_pred hhHHHHHHhhhcCCCccEEEecCCCCCCCC-cccccCCCCCCCCCCCcccccce-eeeec-CCCCHHHHHhc--CCCCEE
Q 043412 54 RNLAVELYNTECRTNETVVICHSEPGAWYP-PLFDTLPCPPTPGYGDFMAVIGR-TMFET-DRVSPEHVKRC--NRMDFV 128 (383)
Q Consensus 54 ~~~~~~l~~~~~~~~pDiV~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~--~~ad~v 128 (383)
...+..+.+++.+++||+|+++......++ ++.+.....++ .+..+- ..++. ........+.+ +-||.-
T Consensus 53 ~~~~~~~~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~~~ipv------~HieaGlRs~d~~~g~~de~~R~~i~~la~lh 126 (346)
T PF02350_consen 53 GLAIIELADVLEREKPDAVLVLGDRNEALAAALAAFYLNIPV------AHIEAGLRSGDRTEGMPDEINRHAIDKLAHLH 126 (346)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEETTSHHHHHHHHHHHHTT-EE------EEES-----S-TTSSTTHHHHHHHHHHH-SEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCCchHHHHHHHHHHhCCCE------EEecCCCCccccCCCCchhhhhhhhhhhhhhh
Confidence 445667778888999999999976542222 11111111111 122221 11111 13455555543 669999
Q ss_pred EEeChHHHHHHHhcCCCCCCeEEecC-CCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeecccc---ccC
Q 043412 129 WVPTDFHVSTFIRSGVDPAKVVKIVQ-PVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEY---RKG 204 (383)
Q Consensus 129 i~~s~~~~~~~~~~~~~~~~i~vi~n-gid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~---~K~ 204 (383)
+++++..++.+.+.|.++++|.++.| ++|.-.......... . ....+. ...++++++++.=+.+. ...
T Consensus 127 f~~t~~~~~~L~~~G~~~~rI~~vG~~~~D~l~~~~~~~~~~-~---~~~~i~----~~~~~~~iLvt~H~~t~~~~~~~ 198 (346)
T PF02350_consen 127 FAPTEEARERLLQEGEPPERIFVVGNPGIDALLQNKEEIEEK-Y---KNSGIL----QDAPKPYILVTLHPVTNEDNPER 198 (346)
T ss_dssp EESSHHHHHHHHHTT--GGGEEE---HHHHHHHHHHHTTCC--H---HHHHHH----HCTTSEEEEEE-S-CCCCTHH--
T ss_pred ccCCHHHHHHHHhcCCCCCeEEEEChHHHHHHHHhHHHHhhh-h---hhHHHH----hccCCCEEEEEeCcchhcCChHH
Confidence 99999999999999999999999998 455432111111000 0 000110 00345566666544332 345
Q ss_pred HHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCC-CC-------CccccccccCceEEecCCCCCCChH
Q 043412 205 WDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSD-LE-------KPDDGWAPAADVFVLPSRGEGWGRP 276 (383)
Q Consensus 205 ~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~-~~-------~~v~~~~~~adi~v~ps~~e~~~~~ 276 (383)
...+.++++.+.+. +++.+++..... +.....+.+.+..+. +. .++..+++.|+++|-=| | .
T Consensus 199 ~~~i~~~l~~L~~~-~~~~vi~~~hn~---p~~~~~i~~~l~~~~~v~~~~~l~~~~~l~ll~~a~~vvgdS-----s-G 268 (346)
T PF02350_consen 199 LEQILEALKALAER-QNVPVIFPLHNN---PRGSDIIIEKLKKYDNVRLIEPLGYEEYLSLLKNADLVVGDS-----S-G 268 (346)
T ss_dssp HHHHHHHHHHHHHH-TTEEEEEE--S----HHHHHHHHHHHTT-TTEEEE----HHHHHHHHHHESEEEESS-----H-H
T ss_pred HHHHHHHHHHHHhc-CCCcEEEEecCC---chHHHHHHHHhcccCCEEEECCCCHHHHHHHHhcceEEEEcC-----c-c
Confidence 67788888888777 789999887631 244555555554441 10 33457779999998444 4 5
Q ss_pred HH-HHHHcCCCEEEcCC-CCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 043412 277 LV-EAMSMGLPVIATNW-SGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQA 354 (383)
Q Consensus 277 ~~-Ea~a~G~PvI~~~~-~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a 354 (383)
+. ||.++|+|+|.-.. +...+....+...+++. |.+++.+++.+++.+++.+.++..
T Consensus 269 I~eEa~~lg~P~v~iR~~geRqe~r~~~~nvlv~~-------------------~~~~I~~ai~~~l~~~~~~~~~~~-- 327 (346)
T PF02350_consen 269 IQEEAPSLGKPVVNIRDSGERQEGRERGSNVLVGT-------------------DPEAIIQAIEKALSDKDFYRKLKN-- 327 (346)
T ss_dssp HHHHGGGGT--EEECSSS-S-HHHHHTTSEEEETS-------------------SHHHHHHHHHHHHH-HHHHHHHHC--
T ss_pred HHHHHHHhCCeEEEecCCCCCHHHHhhcceEEeCC-------------------CHHHHHHHHHHHHhChHHHHhhcc--
Confidence 66 99999999999844 55566666665555542 899999999999988555444322
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 043412 355 REDMIQRFSPETVAGIVTDHIK 376 (383)
Q Consensus 355 ~~~~~~~~s~~~~~~~~~~~~~ 376 (383)
....|.-...++++.++++
T Consensus 328 ---~~npYgdG~as~rI~~~Lk 346 (346)
T PF02350_consen 328 ---RPNPYGDGNASERIVEILK 346 (346)
T ss_dssp ---S--TT-SS-HHHHHHHHHH
T ss_pred ---CCCCCCCCcHHHHHHHhhC
Confidence 1345666777777777654
No 119
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.52 E-value=4.6e-07 Score=80.85 Aligned_cols=111 Identities=20% Similarity=0.234 Sum_probs=76.4
Q ss_pred cccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCcccccc----CC--Cc-eeeecccccccccCCCCcccccCC
Q 043412 256 GWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLT----EE--NG-YPLLVGRMSEVTEGPFKGHFWAEP 328 (383)
Q Consensus 256 ~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~----~~--~g-~~~~~~~~~~~~~~~~~g~~~~~~ 328 (383)
.+.+.|++.|+||++|+||.+..|+-.+|+|-|+|+.+|..-+.+ +. .| ++++.. +--++.
T Consensus 496 eFVRGCHLGVFPSYYEPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvDRR------------fks~de 563 (692)
T KOG3742|consen 496 EFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDRR------------FKSPDE 563 (692)
T ss_pred HHhccccccccccccCCCCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEecc------------cCChhh
Confidence 344999999999999999999999999999999999987654443 32 34 333321 111222
Q ss_pred CHHHHHHHHHHHhcCHHHHHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 043412 329 SVDKLRALMRLVVSNVDEAKAKGK-QAREDMIQRFSPETVAGIVTDHIKDIL 379 (383)
Q Consensus 329 ~~~~la~~i~~ll~~~~~~~~~~~-~a~~~~~~~~s~~~~~~~~~~~~~~~~ 379 (383)
+.+++++-|.++..... ++++.+ |--++...-.+|..+...|.+.=...+
T Consensus 564 Sv~qL~~~m~~F~~qsR-RQRIiqRNrtErLSdLLDWk~lG~~Y~~aR~laL 614 (692)
T KOG3742|consen 564 SVQQLASFMYEFCKQSR-RQRIIQRNRTERLSDLLDWKYLGRYYRKARHLAL 614 (692)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhcchhhHHHHHhHHHHhHHHHHHHHHHH
Confidence 77888888888776443 444433 334556677899888877766544444
No 120
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.47 E-value=1.1e-06 Score=79.31 Aligned_cols=179 Identities=11% Similarity=0.029 Sum_probs=104.5
Q ss_pred CCccEEEecCCCCCCC--CcccccCCCCCCCCCCCcccccc--eeeeecCCCCHHHHHhcCCCCEEEEeChHHHHHHHhc
Q 043412 67 TNETVVICHSEPGAWY--PPLFDTLPCPPTPGYGDFMAVIG--RTMFETDRVSPEHVKRCNRMDFVWVPTDFHVSTFIRS 142 (383)
Q Consensus 67 ~~pDiV~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~ 142 (383)
.+||+++.-+.++..+ +...+.. .+ +.+. .+++. .|.|... +..+..+.+|.+++.-++..+.+
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~-~~---~i~v-iyyi~PqvWAWr~~----R~~~i~k~~d~vl~ifPFE~~~y--- 142 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKA-YP---KKEI-IYYILPQVWAWKKG----RAKILEKYCDFLASILPFEVQFY--- 142 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhc-CC---CCCE-EEEECccceeeCcc----hHHHHHHHHhhhhccCCCCHHHh---
Confidence 6999999987766332 1111111 10 1121 23333 3444332 23344467888888888777777
Q ss_pred CCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccc-c-ccCHHHHHHHHHHHhccCC
Q 043412 143 GVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWE-Y-RKGWDVLLKAYLEEFSKAD 220 (383)
Q Consensus 143 ~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~-~-~K~~~~ll~a~~~l~~~~~ 220 (383)
|. ++.+++|++-.. +.+... . + +++..+.+..|+-. + .+.+..+++++.++.++.
T Consensus 143 g~---~~~~VGhPl~d~-~~~~~~-~----------~-------~~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~- 199 (347)
T PRK14089 143 QS---KATYVGHPLLDE-IKEFKK-D----------L-------DKEGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKE- 199 (347)
T ss_pred CC---CCEEECCcHHHh-hhhhhh-h----------c-------CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcC-
Confidence 44 567889985322 211100 0 0 12345666666432 2 345677788998887653
Q ss_pred CeEEEEEeCCCCCCCchHHHHHHHHhhC---CCCCccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCC
Q 043412 221 GVVLYLLTNPYHSGRDFGNKIVNFVEDS---DLEKPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNW 292 (383)
Q Consensus 221 ~~~l~i~G~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~ 292 (383)
..+++.+.. .. +.+++..... .+.++...+++.||+.+..| |.+.+|++.+|+|.|...-
T Consensus 200 -~~~~i~~a~-----~~-~~i~~~~~~~~~~~~~~~~~~~m~~aDlal~~S-----GT~TLE~al~g~P~Vv~Yk 262 (347)
T PRK14089 200 -KILVVPSFF-----KG-KDLKEIYGDISEFEISYDTHKALLEAEFAFICS-----GTATLEAALIGTPFVLAYK 262 (347)
T ss_pred -cEEEEeCCC-----cH-HHHHHHHhcCCCcEEeccHHHHHHhhhHHHhcC-----cHHHHHHHHhCCCEEEEEe
Confidence 677777653 11 4444443321 22245567889999998777 7888899999999888543
No 121
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.45 E-value=1.2e-06 Score=77.35 Aligned_cols=92 Identities=16% Similarity=0.047 Sum_probs=64.1
Q ss_pred cEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEE-EEeCCCCCCCchHHHHHHHHhhC------CCCCccccccccCc
Q 043412 190 EFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLY-LLTNPYHSGRDFGNKIVNFVEDS------DLEKPDDGWAPAAD 262 (383)
Q Consensus 190 ~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~-i~G~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~ad 262 (383)
+.++++.|..++.+....+++++.++. +++++. ++|.+. +..+++++.+... +..+++..+|+.||
T Consensus 171 ~~iLi~~GG~d~~~~~~~~l~~l~~~~---~~~~i~vv~G~~~----~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aD 243 (279)
T TIGR03590 171 RRVLVSFGGADPDNLTLKLLSALAESQ---INISITLVTGSSN----PNLDELKKFAKEYPNIILFIDVENMAELMNEAD 243 (279)
T ss_pred CeEEEEeCCcCCcCHHHHHHHHHhccc---cCceEEEEECCCC----cCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCC
Confidence 456788887777665667777776542 344443 555542 3345666665542 33367889999999
Q ss_pred eEEecCCCCCCChHHHHHHHcCCCEEEcCCC
Q 043412 263 VFVLPSRGEGWGRPLVEAMSMGLPVIATNWS 293 (383)
Q Consensus 263 i~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~ 293 (383)
+++.+ .|.++.|++++|+|+|+....
T Consensus 244 l~Is~-----~G~T~~E~~a~g~P~i~i~~~ 269 (279)
T TIGR03590 244 LAIGA-----AGSTSWERCCLGLPSLAICLA 269 (279)
T ss_pred EEEEC-----CchHHHHHHHcCCCEEEEEec
Confidence 99974 468999999999999988763
No 122
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.34 E-value=1.4e-05 Score=71.66 Aligned_cols=223 Identities=16% Similarity=0.147 Sum_probs=115.5
Q ss_pred HHHHHHhhhcCCCccEEEecCCCCCCCCcccccCCCCCCCCCCCcccccceeeeecCCCCHHHHHhcCCCCEEEEeChHH
Q 043412 56 LAVELYNTECRTNETVVICHSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETDRVSPEHVKRCNRMDFVWVPTDFH 135 (383)
Q Consensus 56 ~~~~l~~~~~~~~pDiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~ 135 (383)
...++.+++++++||+++++....+...++....+.... -+..+ .. ....-.+..||.++++.-.-
T Consensus 71 R~~~l~~~~~~~~pDv~is~~s~~a~~va~~lgiP~I~f---~D~e~--a~---------~~~~Lt~Pla~~i~~P~~~~ 136 (335)
T PF04007_consen 71 RQYKLLKLIKKFKPDVAISFGSPEAARVAFGLGIPSIVF---NDTEH--AI---------AQNRLTLPLADVIITPEAIP 136 (335)
T ss_pred HHHHHHHHHHhhCCCEEEecCcHHHHHHHHHhCCCeEEE---ecCch--hh---------ccceeehhcCCeeECCcccC
Confidence 346677888899999999986544322222222221111 01000 00 00001135799999998877
Q ss_pred HHHHHhcCCCCCCeEEecCCCcCCC----CCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccc--cccCH-HHH
Q 043412 136 VSTFIRSGVDPAKVVKIVQPVHVGF----FDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWE--YRKGW-DVL 208 (383)
Q Consensus 136 ~~~~~~~~~~~~~i~vi~ngid~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~--~~K~~-~~l 208 (383)
.+.+.++|.. +++. -++|++... |.|... ...+++ ++++..+++=...+. ..+|- ..+
T Consensus 137 ~~~~~~~G~~-~~i~-~y~G~~E~ayl~~F~Pd~~------vl~~lg-------~~~~~yIvvR~~~~~A~y~~~~~~i~ 201 (335)
T PF04007_consen 137 KEFLKRFGAK-NQIR-TYNGYKELAYLHPFKPDPE------VLKELG-------LDDEPYIVVRPEAWKASYDNGKKSIL 201 (335)
T ss_pred HHHHHhcCCc-CCEE-EECCeeeEEeecCCCCChh------HHHHcC-------CCCCCEEEEEeccccCeeecCccchH
Confidence 7778888765 3332 267776432 333221 122222 344444443222221 11222 234
Q ss_pred HHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCC--C-Ccc--ccccccCceEEecCCCCCCChHHHHHHHc
Q 043412 209 LKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDL--E-KPD--DGWAPAADVFVLPSRGEGWGRPLVEAMSM 283 (383)
Q Consensus 209 l~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~--~-~~v--~~~~~~adi~v~ps~~e~~~~~~~Ea~a~ 283 (383)
-+.+.++.+. .+. ++++.... +..+ ..+..++ . +.+ ..++.-||++|. +.|....||...
T Consensus 202 ~~ii~~L~~~-~~~-vV~ipr~~----~~~~----~~~~~~~~i~~~~vd~~~Ll~~a~l~Ig-----~ggTMa~EAA~L 266 (335)
T PF04007_consen 202 PEIIEELEKY-GRN-VVIIPRYE----DQRE----LFEKYGVIIPPEPVDGLDLLYYADLVIG-----GGGTMAREAALL 266 (335)
T ss_pred HHHHHHHHhh-Cce-EEEecCCc----chhh----HHhccCccccCCCCCHHHHHHhcCEEEe-----CCcHHHHHHHHh
Confidence 4555555443 343 55554331 1111 2223332 1 323 378899999983 346889999999
Q ss_pred CCCEEEcCCCC---ccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHh
Q 043412 284 GLPVIATNWSG---PTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVV 341 (383)
Q Consensus 284 G~PvI~~~~~g---~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll 341 (383)
|+|+|.+..+- ..+++. +. |.++...|++++.+.+.+.+
T Consensus 267 GtPaIs~~~g~~~~vd~~L~-~~------------------Gll~~~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 267 GTPAISCFPGKLLAVDKYLI-EK------------------GLLYHSTDPDEIVEYVRKNL 308 (335)
T ss_pred CCCEEEecCCcchhHHHHHH-HC------------------CCeEecCCHHHHHHHHHHhh
Confidence 99999975432 222221 22 44555559999888665543
No 123
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=98.18 E-value=0.0003 Score=61.17 Aligned_cols=268 Identities=12% Similarity=0.074 Sum_probs=151.2
Q ss_pred HHHHHhhhcCCCccEEEecCCCC--CCCCcccccCCCCCCCCCCCcccccceeeeecC-CCCHHHH---Hh--cCCCCEE
Q 043412 57 AVELYNTECRTNETVVICHSEPG--AWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETD-RVSPEHV---KR--CNRMDFV 128 (383)
Q Consensus 57 ~~~l~~~~~~~~pDiV~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~--~~~ad~v 128 (383)
...+....+..+.+=+++|+-.. .|.+.++..+.... .+.+.+|..+++.. .++..+. ++ .++.-+|
T Consensus 28 a~avi~~a~~~r~~rff~HGqFn~~lwlall~g~~~~~q-----~yWhiWGaDLYe~~~~lk~rlfy~lRR~aq~rvg~v 102 (322)
T PRK02797 28 AEAVIAKAKANRAQRFFLHGQFNPTLWLALLSGKIKPKQ-----FYWHIWGADLYEESKGLKFRLFYPLRRLAQKRVGHV 102 (322)
T ss_pred HHHHHHHHhhCccceEEEecCCCHHHHHHHHhCCcCccc-----eEEEEEChhhhhcccchhHHHHHHHHHHHHhhcCeE
Confidence 34444445556777788886533 33333333332222 25666666665322 2222221 11 4788899
Q ss_pred EEeChHHHHHH-Hh-cCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeecc-ccccCH
Q 043412 129 WVPTDFHVSTF-IR-SGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKW-EYRKGW 205 (383)
Q Consensus 129 i~~s~~~~~~~-~~-~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~-~~~K~~ 205 (383)
++ .......+ ++ ++++ .+....|.-.+.......... . +.+++ -+.+|+. ++.-+.
T Consensus 103 ~a-trGD~~~~a~~~~~v~-~~llyfpt~m~~~l~~~~~~~----~--------------~~~~~-tIlvGNSgd~SN~H 161 (322)
T PRK02797 103 FA-TRGDLSYFAQRHPKVP-GSLLYFPTRMDPSLNTMANDR----Q--------------RAGKM-TILVGNSGDRSNRH 161 (322)
T ss_pred EE-ecchHHHHHHhcCCCC-ccEEecCCcchhhhccccccc----c--------------CCCce-EEEEeCCCCCcccH
Confidence 99 55555554 33 5554 344333433332111111100 0 12233 3444543 456667
Q ss_pred HHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC------------CccccccccCceEEecC-CCCC
Q 043412 206 DVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE------------KPDDGWAPAADVFVLPS-RGEG 272 (383)
Q Consensus 206 ~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~adi~v~ps-~~e~ 272 (383)
..+++++.+.. ..++++++--+-+..+..|.+++.+...++--. ++...+++.||+.++-. +..|
T Consensus 162 ie~L~~l~~~~--~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQg 239 (322)
T PRK02797 162 IEALRALHQQF--GDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQCDLGYFIFARQQG 239 (322)
T ss_pred HHHHHHHHHHh--CCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHhCCEEEEeechhhH
Confidence 77777776653 457888887665546678888888887776432 33357789999998875 4677
Q ss_pred CChHHHHHHHcCCCEEEcCC-CCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHH
Q 043412 273 WGRPLVEAMSMGLPVIATNW-SGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKG 351 (383)
Q Consensus 273 ~~~~~~Ea~a~G~PvI~~~~-~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~ 351 (383)
.|+ +.=.+.+|+||+.+.. +-..++.+.+.-++++.+.+ |...+.++ .++|.
T Consensus 240 iGn-l~lLi~~G~~v~l~r~n~fwqdl~e~gv~Vlf~~d~L----------------~~~~v~e~----------~rql~ 292 (322)
T PRK02797 240 IGT-LCLLIQLGKPVVLSRDNPFWQDLTEQGLPVLFTGDDL----------------DEDIVREA----------QRQLA 292 (322)
T ss_pred HhH-HHHHHHCCCcEEEecCCchHHHHHhCCCeEEecCCcc----------------cHHHHHHH----------HHHHH
Confidence 775 4558899999888854 66666655554444443210 33333221 22334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 043412 352 KQAREDMIQRFSPETVAGIVTDHIKDILSS 381 (383)
Q Consensus 352 ~~a~~~~~~~~s~~~~~~~~~~~~~~~~~~ 381 (383)
...++.+. |+-++..+.|.+++..+..+
T Consensus 293 ~~dk~~I~--Ff~pn~~~~W~~~l~~~~g~ 320 (322)
T PRK02797 293 SVDKNIIA--FFSPNYLQGWRNALAIAAGE 320 (322)
T ss_pred hhCcceee--ecCHhHHHHHHHHHHHhhCC
Confidence 44444333 99999999999999876654
No 124
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.13 E-value=3.5e-05 Score=71.94 Aligned_cols=100 Identities=20% Similarity=0.187 Sum_probs=64.5
Q ss_pred ccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCcccc----ccC-CCceeeecccccccccCCCCcccccCCC
Q 043412 255 DGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEY----LTE-ENGYPLLVGRMSEVTEGPFKGHFWAEPS 329 (383)
Q Consensus 255 ~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~----v~~-~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 329 (383)
..++..||++|..+ ...+++||+++|+|+|+....+-... +.+ +.|..+.. ...+
T Consensus 286 ~~ll~~~~~~I~hg----G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~----------------~~~~ 345 (392)
T TIGR01426 286 LEILKKADAFITHG----GMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPP----------------EEVT 345 (392)
T ss_pred HHHHhhCCEEEECC----CchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEecc----------------ccCC
Confidence 36789999999544 23579999999999999876432211 111 33332221 1227
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043412 330 VDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVTDHI 375 (383)
Q Consensus 330 ~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~ 375 (383)
.++++++|+++++|++.++++.+-+. .+...-..+..++.+.+++
T Consensus 346 ~~~l~~ai~~~l~~~~~~~~~~~l~~-~~~~~~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 346 AEKLREAVLAVLSDPRYAERLRKMRA-EIREAGGARRAADEIEGFL 390 (392)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHhh
Confidence 89999999999999986666544433 3455556666666665543
No 125
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.03 E-value=1.3e-05 Score=72.43 Aligned_cols=93 Identities=12% Similarity=0.047 Sum_probs=61.8
Q ss_pred CCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC-CccccccccCceEEe
Q 043412 188 SKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE-KPDDGWAPAADVFVL 266 (383)
Q Consensus 188 ~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~adi~v~ 266 (383)
++..+++++|..... .++++++. .++..+++.|.... ... ...+...++. .++..+++.||++|.
T Consensus 191 ~~~~iLv~~gg~~~~----~~~~~l~~----~~~~~~~v~g~~~~--~~~----~~ni~~~~~~~~~~~~~m~~ad~vIs 256 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG----DLIEALKA----LPDYQFIVFGPNAA--DPR----PGNIHVRPFSTPDFAELMAAADLVIS 256 (318)
T ss_pred CCCEEEEEeCCCcHH----HHHHHHHh----CCCCeEEEEcCCcc--ccc----CCCEEEeecChHHHHHHHHhCCEEEE
Confidence 456778888875433 55666554 46788988876521 011 2222334444 677899999999995
Q ss_pred cCCCCCCChHHHHHHHcCCCEEEcCCCCcccc
Q 043412 267 PSRGEGWGRPLVEAMSMGLPVIATNWSGPTEY 298 (383)
Q Consensus 267 ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~ 298 (383)
.. .-.++.||+++|+|+|+-+..+..|.
T Consensus 257 ~~----G~~t~~Ea~~~g~P~l~ip~~~~~EQ 284 (318)
T PF13528_consen 257 KG----GYTTISEALALGKPALVIPRPGQDEQ 284 (318)
T ss_pred CC----CHHHHHHHHHcCCCEEEEeCCCCchH
Confidence 54 23459999999999999988654443
No 126
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.99 E-value=0.00058 Score=59.00 Aligned_cols=233 Identities=14% Similarity=0.077 Sum_probs=124.0
Q ss_pred hHHHHHHhhhcCCCccEEEecCCCCCCCCcccccCCCCCCCCCCCcccccceeeeecCCCCHHHHHhcCCCCEEEEeChH
Q 043412 55 NLAVELYNTECRTNETVVICHSEPGAWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETDRVSPEHVKRCNRMDFVWVPTDF 134 (383)
Q Consensus 55 ~~~~~l~~~~~~~~pDiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~ 134 (383)
.....|.+++.+++||+.+.-+.+. .+.....+..+.. .. .........-..-+..||.+++++..
T Consensus 71 eR~~~L~ki~~~~kpdv~i~~~s~~--l~rvafgLg~psI------i~------~D~ehA~~qnkl~~Pla~~ii~P~~~ 136 (346)
T COG1817 71 ERVYKLSKIIAEFKPDVAIGKHSPE--LPRVAFGLGIPSI------IF------VDNEHAEAQNKLTLPLADVIITPEAI 136 (346)
T ss_pred HHHHHHHHHHhhcCCceEeecCCcc--hhhHHhhcCCceE------Ee------cCChhHHHHhhcchhhhhheeccccc
Confidence 3446788899999999988843221 1111111222211 00 00000011111224779999999999
Q ss_pred HHHHHHhcCCCCCCeEEecCCCcC----CCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEE-eec-----cccccC
Q 043412 135 HVSTFIRSGVDPAKVVKIVQPVHV----GFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLS-VFK-----WEYRKG 204 (383)
Q Consensus 135 ~~~~~~~~~~~~~~i~vi~ngid~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~-~g~-----~~~~K~ 204 (383)
..+.+...|..+.++. -.||+-. ..|.|.+. ...+++ +.++...|++ .-. ....++
T Consensus 137 ~~~~~~~~G~~p~~i~-~~~giae~~~v~~f~pd~e------vlkeLg-------l~~~~~yIVmRpe~~~A~y~~g~~~ 202 (346)
T COG1817 137 DEEELLDFGADPNKIS-GYNGIAELANVYGFVPDPE------VLKELG-------LEEGETYIVMRPEPWGAHYDNGDRG 202 (346)
T ss_pred chHHHHHhCCCcccee-cccceeEEeecccCCCCHH------HHHHcC-------CCCCCceEEEeeccccceeeccccc
Confidence 8888888888765543 3455421 22333322 123333 3454333333 111 123556
Q ss_pred HHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCCCcccc---ccccCceEEecCCCCCCChHHHHHH
Q 043412 205 WDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLEKPDDG---WAPAADVFVLPSRGEGWGRPLVEAM 281 (383)
Q Consensus 205 ~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~adi~v~ps~~e~~~~~~~Ea~ 281 (383)
.+.+.++++.+.+. + .+++-.. ...+++-+..+..-..+++.. ++--|++++ .+.|.-.-||+
T Consensus 203 ~~~~~~li~~l~k~-g---iV~ipr~-----~~~~eife~~~n~i~pk~~vD~l~Llyya~lvi-----g~ggTMarEaA 268 (346)
T COG1817 203 ISVLPDLIKELKKY-G---IVLIPRE-----KEQAEIFEGYRNIIIPKKAVDTLSLLYYATLVI-----GAGGTMAREAA 268 (346)
T ss_pred hhhHHHHHHHHHhC-c---EEEecCc-----hhHHHHHhhhccccCCcccccHHHHHhhhheee-----cCCchHHHHHH
Confidence 66777777776443 2 4444322 223333333333333344444 556667776 34467789999
Q ss_pred HcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHH
Q 043412 282 SMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVD 345 (383)
Q Consensus 282 a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~ 345 (383)
..|+|.|++.-| -.-.++. +++ ..|.++...|+.+..+...+.+.++.
T Consensus 269 lLGtpaIs~~pG-kll~vdk---~li------------e~G~~~~s~~~~~~~~~a~~~l~~~~ 316 (346)
T COG1817 269 LLGTPAISCYPG-KLLAVDK---YLI------------EKGLLYHSTDEIAIVEYAVRNLKYRR 316 (346)
T ss_pred HhCCceEEecCC-ccccccH---HHH------------hcCceeecCCHHHHHHHHHHHhhchh
Confidence 999999999843 2222222 111 13555555588888888888777664
No 127
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=97.92 E-value=1.6e-05 Score=72.00 Aligned_cols=92 Identities=15% Similarity=0.068 Sum_probs=55.2
Q ss_pred CcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC-CccccccccCceEEec
Q 043412 189 KEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE-KPDDGWAPAADVFVLP 267 (383)
Q Consensus 189 ~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~adi~v~p 267 (383)
+..++++.|. .+...+++++.++ +++.+++ |.... . .+.+.+.+...++. +++..++..||+++.-
T Consensus 188 ~~~iLv~~g~----~~~~~l~~~l~~~----~~~~~i~-~~~~~-~---~~~~~~~v~~~~~~~~~~~~~l~~ad~vI~~ 254 (321)
T TIGR00661 188 EDYILVYIGF----EYRYKILELLGKI----ANVKFVC-YSYEV-A---KNSYNENVEIRRITTDNFKELIKNAELVITH 254 (321)
T ss_pred CCcEEEECCc----CCHHHHHHHHHhC----CCeEEEE-eCCCC-C---ccccCCCEEEEECChHHHHHHHHhCCEEEEC
Confidence 3445566554 3455666666443 5555544 43211 1 11121222223444 4788999999999966
Q ss_pred CCCCCCChHHHHHHHcCCCEEEcCCCCccc
Q 043412 268 SRGEGWGRPLVEAMSMGLPVIATNWSGPTE 297 (383)
Q Consensus 268 s~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e 297 (383)
+ ...++.||+++|+|+|..+..+..|
T Consensus 255 ~----G~~t~~Ea~~~g~P~l~ip~~~~~e 280 (321)
T TIGR00661 255 G----GFSLISEALSLGKPLIVIPDLGQFE 280 (321)
T ss_pred C----ChHHHHHHHHcCCCEEEEcCCCccc
Confidence 5 2347999999999999998865444
No 128
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=97.89 E-value=0.00019 Score=66.37 Aligned_cols=226 Identities=17% Similarity=0.248 Sum_probs=104.5
Q ss_pred HHHHhcCCCCEEEEeChHHHHHHHh-cCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEE
Q 043412 117 EHVKRCNRMDFVWVPTDFHVSTFIR-SGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLS 195 (383)
Q Consensus 117 ~~~~~~~~ad~vi~~s~~~~~~~~~-~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ 195 (383)
.........|.+++.|+..++.+.+ ++.+++++.+.+.+-....+...... ....... ++++.++.+|++
T Consensus 127 ~~~~~~~~~d~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l~~~~~~~--~~~i~~~-------~~~~~~~k~ILy 197 (369)
T PF04464_consen 127 NYKRNYRNYDYFIVSSEFEKEIFKKAFGYPEDKILVTGYPRNDYLFNKSKEN--RNRIKKK-------LGIDKDKKVILY 197 (369)
T ss_dssp HHHHHHTT-SEEEESSHHHHHHHHHHTT--GGGEEES--GGGHHHHHSTT-H--HHHHHHH-------TT--SS-EEEEE
T ss_pred hhhhhccCCcEEEECCHHHHHHHHHHhccCcceEEEeCCCeEhHHhccCHHH--HHHHHHH-------hccCCCCcEEEE
Confidence 4455578899999999999999988 78887777666543221122221111 0000111 123466778888
Q ss_pred eeccccccCH------HHH--HHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhh------CCCCCccccccccC
Q 043412 196 VFKWEYRKGW------DVL--LKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVED------SDLEKPDDGWAPAA 261 (383)
Q Consensus 196 ~g~~~~~K~~------~~l--l~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~a 261 (383)
+=.+...... ... .+.+. ....+++.+++..-. ............ ..-.+++..++..|
T Consensus 198 aPT~R~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~li~k~Hp-----~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~~a 270 (369)
T PF04464_consen 198 APTWRDNSSNEYFKFFFSDLDFEKLN--FLLKNNYVLIIKPHP-----NMKKKFKDFKEDNSNIIFVSDNEDIYDLLAAA 270 (369)
T ss_dssp E----GGG--GGSS----TT-HHHHH--HHHTTTEEEEE--SH-----HHHTT----TT-TTTEEE-TT-S-HHHHHHT-
T ss_pred eeccccccccccccccccccCHHHHH--HHhCCCcEEEEEeCc-----hhhhchhhhhccCCcEEECCCCCCHHHHHHhc
Confidence 7654332221 122 22222 223468888876532 111222111111 11124678899999
Q ss_pred ceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHh
Q 043412 262 DVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVV 341 (383)
Q Consensus 262 di~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll 341 (383)
|++|.= ++-++.|++.+++|||.-... ..++ ....|+..+... ..-|..+ .+.++|.++|..++
T Consensus 271 DiLITD-----ySSi~fD~~~l~KPiify~~D-~~~Y-~~~rg~~~~~~~-------~~pg~~~--~~~~eL~~~i~~~~ 334 (369)
T PF04464_consen 271 DILITD-----YSSIIFDFLLLNKPIIFYQPD-LEEY-EKERGFYFDYEE-------DLPGPIV--YNFEELIEAIENII 334 (369)
T ss_dssp SEEEES-----S-THHHHHGGGT--EEEE-TT-TTTT-TTTSSBSS-TTT-------SSSS-EE--SSHHHHHHHHTTHH
T ss_pred CEEEEe-----chhHHHHHHHhCCCEEEEecc-HHHH-hhccCCCCchHh-------hCCCcee--CCHHHHHHHHHhhh
Confidence 999832 355899999999999955321 1222 222444444210 0111121 28999999999998
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043412 342 SNVDEAKAKGKQAREDMIQRFSPETVAGIVTDHI 375 (383)
Q Consensus 342 ~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~ 375 (383)
++++....-.++.++.+. .|.-.+..+++.+.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~-~~~Dg~s~eri~~~I 367 (369)
T PF04464_consen 335 ENPDEYKEKREKFRDKFF-KYNDGNSSERIVNYI 367 (369)
T ss_dssp HHHHHTHHHHHHHHHHHS-TT--S-HHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-CCCCchHHHHHHHHH
Confidence 876654433333333222 244445566665554
No 129
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=97.89 E-value=6.5e-05 Score=61.02 Aligned_cols=140 Identities=10% Similarity=0.018 Sum_probs=77.6
Q ss_pred CCChhHHHHHHHHHHHhcccCCCceeeeecCCCcccchhhcC-----CC--hh--------hhhHHHHHHhhhc--CCCc
Q 043412 7 GGGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQSLQFWEG-----LP--HH--------MRNLAVELYNTEC--RTNE 69 (383)
Q Consensus 7 ~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~--------~~~~~~~l~~~~~--~~~p 69 (383)
=||+++.+.+|+..|.++|+..++ .+..+........+.+ +| .. +...+.......+ +.+.
T Consensus 16 YGGfET~ve~L~~~l~~~g~~v~V--yc~~~~~~~~~~~y~gv~l~~i~~~~~g~~~si~yd~~sl~~al~~~~~~~~~~ 93 (185)
T PF09314_consen 16 YGGFETFVEELAPRLVSKGIDVTV--YCRSDYYPYKEFEYNGVRLVYIPAPKNGSAESIIYDFLSLLHALRFIKQDKIKY 93 (185)
T ss_pred cCcHHHHHHHHHHHHhcCCceEEE--EEccCCCCCCCcccCCeEEEEeCCCCCCchHHHHHHHHHHHHHHHHHhhccccC
Confidence 499999999999999998877654 3333322111211221 11 11 1111111111222 2468
Q ss_pred cEEEecCCC-CCCCCcccccCCC---CCCCCCCCcccccceeeeecCCCCHHHHHh--------cCCCCEEEEeChHHHH
Q 043412 70 TVVICHSEP-GAWYPPLFDTLPC---PPTPGYGDFMAVIGRTMFETDRVSPEHVKR--------CNRMDFVWVPTDFHVS 137 (383)
Q Consensus 70 DiV~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ad~vi~~s~~~~~ 137 (383)
|+|+++... +.++.++...+.. +.+ ....| .-|...+|.....+. .+.+|.+|+-|+..++
T Consensus 94 ~ii~ilg~~~g~~~~~~~r~~~~~g~~v~------vN~DG-lEWkR~KW~~~~k~~lk~~E~~avk~ad~lIaDs~~I~~ 166 (185)
T PF09314_consen 94 DIILILGYGIGPFFLPFLRKLRKKGGKVV------VNMDG-LEWKRAKWGRPAKKYLKFSEKLAVKYADRLIADSKGIQD 166 (185)
T ss_pred CEEEEEcCCccHHHHHHHHhhhhcCCcEE------ECCCc-chhhhhhcCHHHHHHHHHHHHHHHHhCCEEEEcCHHHHH
Confidence 899998654 3333333333221 222 22222 223333443222211 5899999999999999
Q ss_pred HHHh-cCCCCCCeEEecCCCc
Q 043412 138 TFIR-SGVDPAKVVKIVQPVH 157 (383)
Q Consensus 138 ~~~~-~~~~~~~i~vi~ngid 157 (383)
.+.+ ++ ..+..+|++|.|
T Consensus 167 y~~~~y~--~~~s~~IaYGad 185 (185)
T PF09314_consen 167 YIKERYG--RKKSTFIAYGAD 185 (185)
T ss_pred HHHHHcC--CCCcEEecCCCC
Confidence 9998 66 348899999976
No 130
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=97.85 E-value=0.0032 Score=55.74 Aligned_cols=265 Identities=12% Similarity=0.087 Sum_probs=141.7
Q ss_pred HHHHhhhcCCCccEEEecCCCC--CCCCcccccCCCCCCCCCCCcccccceeeeecCC-CCHHHHH---h--cCCCCEEE
Q 043412 58 VELYNTECRTNETVVICHSEPG--AWYPPLFDTLPCPPTPGYGDFMAVIGRTMFETDR-VSPEHVK---R--CNRMDFVW 129 (383)
Q Consensus 58 ~~l~~~~~~~~pDiV~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~--~~~ad~vi 129 (383)
..+....+..+.+=++.|+... .|+.-++..+... ..+.+.+|..+++... ++.++.. + .++.-.|+
T Consensus 68 ~avi~~a~~~r~~kff~HGqFn~~lwlaLl~g~~~~~-----k~~WhIWGaDLYe~~~~~k~rlfy~lRr~aq~rvg~V~ 142 (360)
T PF07429_consen 68 QAVIAKAKADRADKFFLHGQFNPWLWLALLFGKIKLK-----KCYWHIWGADLYEDSRSLKFRLFYFLRRLAQKRVGHVF 142 (360)
T ss_pred HHHHHHHhhCccceEEEeccCcHHHHHHHHcCCcccc-----ceEEEEeCchhhccccccchhHHHHHHHHHHhhcCeEE
Confidence 3344445566788888886433 2322222222222 2255666666554332 2222211 1 36677777
Q ss_pred EeChHHHHHHHh-cCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeecc-ccccCHHH
Q 043412 130 VPTDFHVSTFIR-SGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKW-EYRKGWDV 207 (383)
Q Consensus 130 ~~s~~~~~~~~~-~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~-~~~K~~~~ 207 (383)
+ .+.....+++ ++..+..+..-|..++........... .+++..| .+|+. ++.-+.-.
T Consensus 143 a-t~GDl~~~~q~~~~~~~~~lyfPt~m~~~~~~~~~~~~------------------~~~~ltI-LvGNSgd~sNnHie 202 (360)
T PF07429_consen 143 A-TRGDLAYFQQRYPRVPASLLYFPTRMDPALTLSEKNKK------------------NKGKLTI-LVGNSGDPSNNHIE 202 (360)
T ss_pred E-EcchHHHHHHHcCCCCceEEEcCCCCchhhhccccccC------------------CCCceEE-EEcCCCCCCccHHH
Confidence 6 4566666666 554434444445444433211111100 1223333 44443 45556666
Q ss_pred HHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC------------CccccccccCceEEecCC-CCCCC
Q 043412 208 LLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE------------KPDDGWAPAADVFVLPSR-GEGWG 274 (383)
Q Consensus 208 ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~adi~v~ps~-~e~~~ 274 (383)
+++++++.. ..++++++--+-+..+.+|.+++.+...++--. ++...+++.||+.++... ..|.|
T Consensus 203 aL~~L~~~~--~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiG 280 (360)
T PF07429_consen 203 ALEALKQQF--GDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIG 280 (360)
T ss_pred HHHHHHHhc--CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHh
Confidence 666665532 457887665543323457788888777765222 333477799999999974 57776
Q ss_pred hHHHHHHHcCCCEEEcCCCCccccccC-CCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhc-CHHHHHHHHH
Q 043412 275 RPLVEAMSMGLPVIATNWSGPTEYLTE-ENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVS-NVDEAKAKGK 352 (383)
Q Consensus 275 ~~~~Ea~a~G~PvI~~~~~g~~e~v~~-~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~-~~~~~~~~~~ 352 (383)
+ +.=.+.+|+||+.+.....-..+.+ +--+++..+ +-|.+.+.++=+++.. |+.
T Consensus 281 n-I~lLl~~G~~v~L~~~np~~~~l~~~~ipVlf~~d----------------~L~~~~v~ea~rql~~~dk~------- 336 (360)
T PF07429_consen 281 N-ICLLLQLGKKVFLSRDNPFWQDLKEQGIPVLFYGD----------------ELDEALVREAQRQLANVDKQ------- 336 (360)
T ss_pred H-HHHHHHcCCeEEEecCChHHHHHHhCCCeEEeccc----------------cCCHHHHHHHHHHHhhCccc-------
Confidence 4 5568999999999977555444444 333333322 1155556555554433 211
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 043412 353 QAREDMIQRFSPETVAGIVTDHIKDIL 379 (383)
Q Consensus 353 ~a~~~~~~~~s~~~~~~~~~~~~~~~~ 379 (383)
.-.|.-.+..+.|.+.+..+.
T Consensus 337 ------~iaFf~pny~~~w~~~l~~~~ 357 (360)
T PF07429_consen 337 ------QIAFFAPNYLQGWRQALRLAA 357 (360)
T ss_pred ------ceeeeCCchHHHHHHHHHHHh
Confidence 123555666677776665443
No 131
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=97.73 E-value=0.00023 Score=66.60 Aligned_cols=150 Identities=17% Similarity=0.150 Sum_probs=80.2
Q ss_pred CCcEEEEEeecccc---ccCHHHHHHHHHHHhccCCCeEEEE-EeCCCCCCCchHHHHHHHHhhCCCCCccccccccCce
Q 043412 188 SKEFVFLSVFKWEY---RKGWDVLLKAYLEEFSKADGVVLYL-LTNPYHSGRDFGNKIVNFVEDSDLEKPDDGWAPAADV 263 (383)
Q Consensus 188 ~~~~~i~~~g~~~~---~K~~~~ll~a~~~l~~~~~~~~l~i-~G~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~adi 263 (383)
++..++++.|+... .+-...+++++..+ +.++++ +|..... . ....+.+.-.+.. ....++..||+
T Consensus 238 ~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~-----~~~~i~~~g~~~~~--~--~~~~~~v~~~~~~-p~~~ll~~~d~ 307 (401)
T cd03784 238 GRPPVYVGFGSMVVRDPEALARLDVEAVATL-----GQRAILSLGWGGLG--A--EDLPDNVRVVDFV-PHDWLLPRCAA 307 (401)
T ss_pred CCCcEEEeCCCCcccCHHHHHHHHHHHHHHc-----CCeEEEEccCcccc--c--cCCCCceEEeCCC-CHHHHhhhhhe
Confidence 45678888887643 23334445555432 445444 4433111 0 0011111111221 23567889999
Q ss_pred EEecCCCCCCChHHHHHHHcCCCEEEcCCCCc----cccccC-CCceeeecccccccccCCCCcccccCCCHHHHHHHHH
Q 043412 264 FVLPSRGEGWGRPLVEAMSMGLPVIATNWSGP----TEYLTE-ENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMR 338 (383)
Q Consensus 264 ~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~----~e~v~~-~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~ 338 (383)
+| ..|...++.||+++|+|+|+....+- .+.+.. +.|..++.. ..+.+++.+++.
T Consensus 308 ~I----~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~----------------~~~~~~l~~al~ 367 (401)
T cd03784 308 VV----HHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPR----------------ELTAERLAAALR 367 (401)
T ss_pred ee----ecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcc----------------cCCHHHHHHHHH
Confidence 99 44456899999999999999977542 112222 333322211 127899999999
Q ss_pred HHhcCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 043412 339 LVVSNVDEAKAKGKQAREDMIQRFSPETVAG 369 (383)
Q Consensus 339 ~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~ 369 (383)
++++++ .++++.+.+.+ +.+.-..+..++
T Consensus 368 ~~l~~~-~~~~~~~~~~~-~~~~~g~~~~~~ 396 (401)
T cd03784 368 RLLDPP-SRRRAAALLRR-IREEDGVPSAAD 396 (401)
T ss_pred HHhCHH-HHHHHHHHHHH-HHhccCHHHHHH
Confidence 999854 34444443333 233334444433
No 132
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.52 E-value=0.051 Score=50.98 Aligned_cols=204 Identities=12% Similarity=0.084 Sum_probs=106.9
Q ss_pred HhcCCCCEEEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCC-Cccc-cCCccccccCCCCCCCCcEEEEEee
Q 043412 120 KRCNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDP-IDLA-SIGKPVLGLSNMNTSSKEFVFLSVF 197 (383)
Q Consensus 120 ~~~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~~i~~~g 197 (383)
..++++|.|.+=-+..++.+++.|++..++.+.+..+ +.-+..... .... ....... ....+.+-+.+.
T Consensus 172 ~vl~~~~~ItvRD~~S~~~Lk~lGv~~~~v~~~aDpA---F~L~~~~~~~~~~~~~~~~~~~------~~~~~~Vgisvr 242 (426)
T PRK10017 172 YVFGHCDALILRESVSLDLMKRSNITTAKVEHGVDTA---WLVDHHTEDFTASYAVQHWLDV------AAQQKTVAITLR 242 (426)
T ss_pred HHHhcCCEEEEccHHHHHHHHHhCCCccceEEecChh---hhCCccccccccchhhhhhhcc------cccCCEEEEEec
Confidence 3479999999999999999999999877888876432 211111100 0000 0000000 011233334434
Q ss_pred ccccc-c-------CH-HHHHHHHHHHhccCCCeEEEEEeCCCC----CCCchHHHHHHHHhhCC---C-C-----Cccc
Q 043412 198 KWEYR-K-------GW-DVLLKAYLEEFSKADGVVLYLLTNPYH----SGRDFGNKIVNFVEDSD---L-E-----KPDD 255 (383)
Q Consensus 198 ~~~~~-K-------~~-~~ll~a~~~l~~~~~~~~l~i~G~~~~----~~~~~~~~~~~~~~~~~---~-~-----~~v~ 255 (383)
.+.+. + .+ ..+.+++..+.++.-++.|+-...+.. ++......+.+.+.... + . .++.
T Consensus 243 ~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~~~~~vi~~~~~~~e~~ 322 (426)
T PRK10017 243 ELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVSDPARYHVVMDELNDLEMG 322 (426)
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhcccccceeEecCCCChHHHH
Confidence 33311 1 12 445566777766544444443322211 11111133333332111 0 1 1234
Q ss_pred cccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCC-CccccccC-C-CceeeecccccccccCCCCcccccCCCHHH
Q 043412 256 GWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWS-GPTEYLTE-E-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDK 332 (383)
Q Consensus 256 ~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~-g~~e~v~~-~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 332 (383)
.+++.||+++..-. ..++=|+++|+|+|+-... -...++.+ + ..+.++. .+.+.++
T Consensus 323 ~iIs~~dl~ig~Rl-----Ha~I~a~~~gvP~i~i~Y~~K~~~~~~~lg~~~~~~~~----------------~~l~~~~ 381 (426)
T PRK10017 323 KILGACELTVGTRL-----HSAIISMNFGTPAIAINYEHKSAGIMQQLGLPEMAIDI----------------RHLLDGS 381 (426)
T ss_pred HHHhhCCEEEEecc-----hHHHHHHHcCCCEEEeeehHHHHHHHHHcCCccEEech----------------hhCCHHH
Confidence 67799999885543 3688999999999998763 22333322 1 2222332 2227889
Q ss_pred HHHHHHHHhcCHHHHHHHHHH
Q 043412 333 LRALMRLVVSNVDEAKAKGKQ 353 (383)
Q Consensus 333 la~~i~~ll~~~~~~~~~~~~ 353 (383)
+.+.+.++++|.+..++.-++
T Consensus 382 Li~~v~~~~~~r~~~~~~l~~ 402 (426)
T PRK10017 382 LQAMVADTLGQLPALNARLAE 402 (426)
T ss_pred HHHHHHHHHhCHHHHHHHHHH
Confidence 999999999988765544333
No 133
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=97.52 E-value=7.1e-07 Score=72.57 Aligned_cols=94 Identities=20% Similarity=0.237 Sum_probs=55.6
Q ss_pred CCCCCccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccC
Q 043412 248 SDLEKPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAE 327 (383)
Q Consensus 248 ~~~~~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~ 327 (383)
.+..+++..+++.||+++. -+.+.++.|++++|+|.|.-+..+..+--+..|...+.. .+.|..+..
T Consensus 60 ~~~~~~m~~~m~~aDlvIs----~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~---------~g~~~~~~~ 126 (167)
T PF04101_consen 60 FGFVDNMAELMAAADLVIS----HAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAK---------KGAAIMLDE 126 (167)
T ss_dssp ECSSSSHHHHHHHHSEEEE----CS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHH---------CCCCCCSEC
T ss_pred EechhhHHHHHHHcCEEEe----CCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHH---------cCCccccCc
Confidence 4566889999999999983 345689999999999998877655221000011100000 011222222
Q ss_pred C--CHHHHHHHHHHHhcCHHHHHHHHHHH
Q 043412 328 P--SVDKLRALMRLVVSNVDEAKAKGKQA 354 (383)
Q Consensus 328 ~--~~~~la~~i~~ll~~~~~~~~~~~~a 354 (383)
. +++.|.++|.+++.++.....|.+++
T Consensus 127 ~~~~~~~L~~~i~~l~~~~~~~~~~~~~~ 155 (167)
T PF04101_consen 127 SELNPEELAEAIEELLSDPEKLKEMAKAA 155 (167)
T ss_dssp CC-SCCCHHHHHHCHCCCHH-SHHHCCCH
T ss_pred ccCCHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 2 57899999999999998777666554
No 134
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=97.52 E-value=0.0023 Score=61.54 Aligned_cols=130 Identities=15% Similarity=0.048 Sum_probs=77.1
Q ss_pred CcEEEEEeecccc-----ccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCCCcc--------c
Q 043412 189 KEFVFLSVFKWEY-----RKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLEKPD--------D 255 (383)
Q Consensus 189 ~~~~i~~~g~~~~-----~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~v--------~ 255 (383)
...+++..|.... .+-...+++|++.+ + .++++..++.. .. .++.+++ .
T Consensus 296 ~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l----~-~~viw~~~~~~-----~~--------~~~p~Nv~i~~w~Pq~ 357 (507)
T PHA03392 296 NGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKL----P-YNVLWKYDGEV-----EA--------INLPANVLTQKWFPQR 357 (507)
T ss_pred CcEEEEECCCCCcCCCCCHHHHHHHHHHHHhC----C-CeEEEEECCCc-----Cc--------ccCCCceEEecCCCHH
Confidence 3588888887642 22345555565443 3 46766654311 00 0112222 2
Q ss_pred ccc--ccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCC----ccccc-cCCCceeeecccccccccCCCCcccccCC
Q 043412 256 GWA--PAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSG----PTEYL-TEENGYPLLVGRMSEVTEGPFKGHFWAEP 328 (383)
Q Consensus 256 ~~~--~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g----~~e~v-~~~~g~~~~~~~~~~~~~~~~~g~~~~~~ 328 (383)
.++ ..++++| ..|...++.||+.+|+|+|+-+..+ ....+ ..+.|..++.. ..
T Consensus 358 ~lL~hp~v~~fI----tHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~----------------~~ 417 (507)
T PHA03392 358 AVLKHKNVKAFV----TQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTV----------------TV 417 (507)
T ss_pred HHhcCCCCCEEE----ecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccC----------------Cc
Confidence 444 3467776 4566779999999999999988742 11111 12344444322 12
Q ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 043412 329 SVDKLRALMRLVVSNVDEAKAKGKQARE 356 (383)
Q Consensus 329 ~~~~la~~i~~ll~~~~~~~~~~~~a~~ 356 (383)
+.+++.+++.++++|+..+++..+-+..
T Consensus 418 t~~~l~~ai~~vl~~~~y~~~a~~ls~~ 445 (507)
T PHA03392 418 SAAQLVLAIVDVIENPKYRKNLKELRHL 445 (507)
T ss_pred CHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8899999999999998876665554444
No 135
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=97.48 E-value=0.002 Score=60.10 Aligned_cols=160 Identities=20% Similarity=0.222 Sum_probs=92.0
Q ss_pred CCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCCCccccccccCceEEec
Q 043412 188 SKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLEKPDDGWAPAADVFVLP 267 (383)
Q Consensus 188 ~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~adi~v~p 267 (383)
+..+++++.|..... ..+++.+.+.... -++++++...+.. . ....+..-+...+. -....++..||+++..
T Consensus 236 d~~~vyvslGt~~~~---~~l~~~~~~a~~~-l~~~vi~~~~~~~-~--~~~~~p~n~~v~~~-~p~~~~l~~ad~vI~h 307 (406)
T COG1819 236 DRPIVYVSLGTVGNA---VELLAIVLEALAD-LDVRVIVSLGGAR-D--TLVNVPDNVIVADY-VPQLELLPRADAVIHH 307 (406)
T ss_pred CCCeEEEEcCCcccH---HHHHHHHHHHHhc-CCcEEEEeccccc-c--ccccCCCceEEecC-CCHHHHhhhcCEEEec
Confidence 456777788876443 3444443333333 3677777764311 0 00000000001111 1113578999999943
Q ss_pred CCCCCCChHHHHHHHcCCCEEEcCCCC----ccccccC-CCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhc
Q 043412 268 SRGEGWGRPLVEAMSMGLPVIATNWSG----PTEYLTE-ENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVS 342 (383)
Q Consensus 268 s~~e~~~~~~~Ea~a~G~PvI~~~~~g----~~e~v~~-~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~ 342 (383)
|...++.||+.+|+|+|+-..+. ..+-+++ ++|..+.. ...+.+.+++++++++.
T Consensus 308 ----GG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~----------------~~l~~~~l~~av~~vL~ 367 (406)
T COG1819 308 ----GGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPF----------------EELTEERLRAAVNEVLA 367 (406)
T ss_pred ----CCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCc----------------ccCCHHHHHHHHHHHhc
Confidence 45568999999999999987752 2222333 45544442 23499999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043412 343 NVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIK 376 (383)
Q Consensus 343 ~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~ 376 (383)
|+..++...+..+. +.+.-.....++.+.++.+
T Consensus 368 ~~~~~~~~~~~~~~-~~~~~g~~~~a~~le~~~~ 400 (406)
T COG1819 368 DDSYRRAAERLAEE-FKEEDGPAKAADLLEEFAR 400 (406)
T ss_pred CHHHHHHHHHHHHH-hhhcccHHHHHHHHHHHHh
Confidence 99876655444433 4555555555555555444
No 136
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.27 E-value=0.0084 Score=56.73 Aligned_cols=171 Identities=13% Similarity=0.096 Sum_probs=119.2
Q ss_pred CCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCCCc-c--------
Q 043412 184 MNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLEKP-D-------- 254 (383)
Q Consensus 184 ~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~-v-------- 254 (383)
++++++.++|+.+..+. |=-...++.+.+++++.|+-.|.+..-.. .-...++..+...|++.+ +
T Consensus 753 y~Lp~d~vvf~~FNqLy--KidP~~l~~W~~ILk~VPnS~LwllrfPa----~ge~rf~ty~~~~Gl~p~riifs~va~k 826 (966)
T KOG4626|consen 753 YGLPEDAVVFCNFNQLY--KIDPSTLQMWANILKRVPNSVLWLLRFPA----VGEQRFRTYAEQLGLEPDRIIFSPVAAK 826 (966)
T ss_pred CCCCCCeEEEeechhhh--cCCHHHHHHHHHHHHhCCcceeEEEeccc----cchHHHHHHHHHhCCCccceeeccccch
Confidence 34578999988887654 44456788999999999998887776542 223778888999998732 2
Q ss_pred ---ccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccc------cCCCceeeecccccccccCCCCcccc
Q 043412 255 ---DGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYL------TEENGYPLLVGRMSEVTEGPFKGHFW 325 (383)
Q Consensus 255 ---~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v------~~~~g~~~~~~~~~~~~~~~~~g~~~ 325 (383)
..-+..+|+.+-+....| -.+-+|.+++|+|+|+-....+..-| .-+.|-++..
T Consensus 827 ~eHvrr~~LaDv~LDTplcnG-hTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak---------------- 889 (966)
T KOG4626|consen 827 EEHVRRGQLADVCLDTPLCNG-HTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK---------------- 889 (966)
T ss_pred HHHHHhhhhhhhcccCcCcCC-cccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh----------------
Confidence 133477888887765443 24668999999999998764332222 1233333322
Q ss_pred cCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHh
Q 043412 326 AEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQ--RFSPETVAGIVTDHIKDILS 380 (383)
Q Consensus 326 ~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~--~~s~~~~~~~~~~~~~~~~~ 380 (383)
+.++..+.-.++-.|.+..+.+...-++.-.. -|+-..++..++++|.++.+
T Consensus 890 ---~~eEY~~iaV~Latd~~~L~~lr~~l~~~r~~splfd~~q~~~~LE~~y~~MW~ 943 (966)
T KOG4626|consen 890 ---NREEYVQIAVRLATDKEYLKKLRAKLRKARASSPLFDTKQYAKGLERLYLQMWK 943 (966)
T ss_pred ---hHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHH
Confidence 77888888888888988888877766653222 58889999999999987753
No 137
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=97.26 E-value=0.00054 Score=55.66 Aligned_cols=86 Identities=16% Similarity=0.098 Sum_probs=55.3
Q ss_pred HHHHHhhhcCCCccEEEecCCCCCCC-CcccccCCCC-CCC--CC-CCcccccceeeeecCCCCHHHHHhcCCCCEEEEe
Q 043412 57 AVELYNTECRTNETVVICHSEPGAWY-PPLFDTLPCP-PTP--GY-GDFMAVIGRTMFETDRVSPEHVKRCNRMDFVWVP 131 (383)
Q Consensus 57 ~~~l~~~~~~~~pDiV~~~~~~~~~~-~~~~~~~~~~-~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~ 131 (383)
..++.+++++.+||+|+|.++.++.. ...+...... ..+ ++ -++...+..|. ...+|..++.
T Consensus 78 ~~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~~~~H~~W~-------------~~~~D~y~Va 144 (169)
T PF06925_consen 78 ARRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDFDTVHPFWI-------------HPGVDRYFVA 144 (169)
T ss_pred HHHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCCCCCCcCee-------------cCCCCEEEEC
Confidence 45678888999999999997754433 2222222211 110 11 11111122222 1579999999
Q ss_pred ChHHHHHHHhcCCCCCCeEEecCC
Q 043412 132 TDFHVSTFIRSGVDPAKVVKIVQP 155 (383)
Q Consensus 132 s~~~~~~~~~~~~~~~~i~vi~ng 155 (383)
|+..++.+.+.|+++++|.+.+-+
T Consensus 145 se~~~~~l~~~Gi~~~~I~vtGiP 168 (169)
T PF06925_consen 145 SEEVKEELIERGIPPERIHVTGIP 168 (169)
T ss_pred CHHHHHHHHHcCCChhHEEEeCcc
Confidence 999999999999999999887654
No 138
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=97.22 E-value=0.008 Score=59.45 Aligned_cols=234 Identities=15% Similarity=0.060 Sum_probs=137.6
Q ss_pred CHHHHHhcCCCCEEEEeChHHHHHHHh-----cCC---------------CCCCeEEecCCCcCCCCCCCCCCCCccccC
Q 043412 115 SPEHVKRCNRMDFVWVPTDFHVSTFIR-----SGV---------------DPAKVVKIVQPVHVGFFDPVNCDPIDLASI 174 (383)
Q Consensus 115 ~~~~~~~~~~ad~vi~~s~~~~~~~~~-----~~~---------------~~~~i~vi~ngid~~~~~~~~~~~~~~~~~ 174 (383)
.......+..+|.+-..++..+..+.. .+. ....+..+|-|+|...+.............
T Consensus 187 r~eIl~gll~~~~i~f~t~d~arhFls~c~R~l~~~~~s~~~~~~v~~rgr~~~v~~~pigid~~r~v~~~~~~~~~~~~ 266 (732)
T KOG1050|consen 187 RKEILRGLLYDDLLGFHTDDYARHFLSTCSRLLGLEVASKFPTAGVSGRGRDVSVKALPIGIDVQRFVKLLELPYVGSKG 266 (732)
T ss_pred HHHHHHhhhccCccccccccHHHHHHHHHHHHHHhhhhccCCcceEEeccceeeeeecccccchHHhhccccchhHHHHH
Confidence 344455567777777666666654432 111 112344566677776665433221111100
Q ss_pred CccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCC----eEEEEEeCCCCCCCchHHHHHHHHh----
Q 043412 175 GKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADG----VVLYLLTNPYHSGRDFGNKIVNFVE---- 246 (383)
Q Consensus 175 ~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~----~~l~i~G~~~~~~~~~~~~~~~~~~---- 246 (383)
....- ...++.+++.+-+++..||...=+.++.+++.++|+ +.++.+..+...+....++++..+.
T Consensus 267 ~ei~~------~~~g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~~~kVvliqi~~~~~~~~~~v~~~k~~v~~~v~ 340 (732)
T KOG1050|consen 267 MEIKE------PFKGKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEWIDKVVLIQIENPKRTDGKEVEELKFCVSVHVR 340 (732)
T ss_pred HHHhh------hccCCceEecccccccccCchHHHHHHHHHHHhChhhhceEEEEEEecCCcccchHHHHHHHHhHhhhh
Confidence 00000 013678899999999999998888899888888764 5566666554433332222322222
Q ss_pred hC----CCC--------------CccccccccCceEEecCCCCCCChHHHHHHHcC----CCEEEcCCCCccccccCCCc
Q 043412 247 DS----DLE--------------KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMG----LPVIATNWSGPTEYLTEENG 304 (383)
Q Consensus 247 ~~----~~~--------------~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G----~PvI~~~~~g~~e~v~~~~g 304 (383)
.. +-. .+...++..+|+.+..+..+|.+++.+|+.+|. .+.|.+...|..+..+++
T Consensus 341 rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~rdGmnl~~~e~i~~~~~~~~~lVlsef~G~~~tl~d~-- 418 (732)
T KOG1050|consen 341 RINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSWRDGMNLVFLEYILCQENKKSVLVLSEFIGDDTTLEDA-- 418 (732)
T ss_pred hhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeecccccccchhhhHHHHhhcccCCceEEeeecccccccccc--
Confidence 11 100 233577799999999999999999999999884 677777776666665443
Q ss_pred eeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043412 305 YPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVTD 373 (383)
Q Consensus 305 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~ 373 (383)
..++.+.+.+.++.+|..+++.++.-.++.....-......+...++....+
T Consensus 419 -----------------aivvnpw~~~~~~~~i~~al~~s~~e~~~r~~~~~~~v~~~~~~~W~~~~~~ 470 (732)
T KOG1050|consen 419 -----------------AIVVNPWDGDEFAILISKALTMSDEERELREPKHYKYVSTHDVVYWAKSFLQ 470 (732)
T ss_pred -----------------CEEECCcchHHHHHHHHHHhhcCHHHHhhcchhhhhhhcchhHHHHHHHHHH
Confidence 2344455999999999999996655444433322212234444444444444
No 139
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=97.21 E-value=9.8e-05 Score=63.87 Aligned_cols=27 Identities=30% Similarity=0.311 Sum_probs=23.3
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhcccC
Q 043412 1 MAPFLSGGGYSSESWSYILALNEHVKN 27 (383)
Q Consensus 1 ~~p~~~~~G~~~~~~~l~~~l~~~g~~ 27 (383)
++||...||++..+.+|.++|+++|+.
T Consensus 9 ~~P~~k~GGLgdv~~~L~kaL~~~G~~ 35 (245)
T PF08323_consen 9 YAPFAKVGGLGDVVGSLPKALAKQGHD 35 (245)
T ss_dssp BTTTB-SSHHHHHHHHHHHHHHHTT-E
T ss_pred cCcccccCcHhHHHHHHHHHHHhcCCe
Confidence 489999999999999999999999963
No 140
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=97.09 E-value=0.001 Score=52.04 Aligned_cols=114 Identities=15% Similarity=0.148 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHhcccCCCceeeeecCCCcccchhhcC-----------CChhhhhHHHHHHhhhcCCCccEEEecCCC
Q 043412 10 YSSESWSYILALNEHVKNPRFKLAIEHHGDLQSLQFWEG-----------LPHHMRNLAVELYNTECRTNETVVICHSEP 78 (383)
Q Consensus 10 ~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~pDiV~~~~~~ 78 (383)
.+.++.++++.|.+.|+...+.. ... +..+.....+ .+..... ..++.+++++++||+||+|...
T Consensus 9 ~~~~~~~~~~~L~~~g~~V~ii~--~~~-~~~~~~~~~~i~~~~~~~~~k~~~~~~~-~~~l~k~ik~~~~DvIh~h~~~ 84 (139)
T PF13477_consen 9 PSTFIYNLAKELKKRGYDVHIIT--PRN-DYEKYEIIEGIKVIRLPSPRKSPLNYIK-YFRLRKIIKKEKPDVIHCHTPS 84 (139)
T ss_pred cHHHHHHHHHHHHHCCCEEEEEE--cCC-CchhhhHhCCeEEEEecCCCCccHHHHH-HHHHHHHhccCCCCEEEEecCC
Confidence 35688999999999987654322 211 1111110111 1222333 4588899999999999999765
Q ss_pred CCCC-CcccccCCC-CCCCCCCCcccccceeeeecCCC---CH-HHHHhcCCCCEEEEeC
Q 043412 79 GAWY-PPLFDTLPC-PPTPGYGDFMAVIGRTMFETDRV---SP-EHVKRCNRMDFVWVPT 132 (383)
Q Consensus 79 ~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~ad~vi~~s 132 (383)
+... ..++..... .+. ....+|......... .. .....++++|.+++.|
T Consensus 85 ~~~~~~~l~~~~~~~~~~-----i~~~hg~~~~~~~~~~~~~~~~~~~~~k~~~~ii~~~ 139 (139)
T PF13477_consen 85 PYGLFAMLAKKLLKNKKV-----IYTVHGSDFYNSSKKKKLKKFIIKFAFKRADKIIVQS 139 (139)
T ss_pred hHHHHHHHHHHHcCCCCE-----EEEecCCeeecCCchHHHHHHHHHHHHHhCCEEEEcC
Confidence 4222 222222222 122 334444333222211 11 2222368999999875
No 141
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=97.03 E-value=0.00098 Score=64.40 Aligned_cols=137 Identities=17% Similarity=0.101 Sum_probs=70.7
Q ss_pred CCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCCCccccccccCceEEec
Q 043412 188 SKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLEKPDDGWAPAADVFVLP 267 (383)
Q Consensus 188 ~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~adi~v~p 267 (383)
++..++++.|.... .-.+..++++.+..++.|+ ++++.-.+ .....+.+-+.-...-.+ .++++...+-++-
T Consensus 275 ~~~vv~vsfGs~~~-~~~~~~~~~~~~~~~~~~~-~~iW~~~~-----~~~~~l~~n~~~~~W~PQ-~~lL~hp~v~~fi 346 (500)
T PF00201_consen 275 KKGVVYVSFGSIVS-SMPEEKLKEIAEAFENLPQ-RFIWKYEG-----EPPENLPKNVLIVKWLPQ-NDLLAHPRVKLFI 346 (500)
T ss_dssp TTEEEEEE-TSSST-T-HHHHHHHHHHHHHCSTT-EEEEEETC-----SHGCHHHTTEEEESS--H-HHHHTSTTEEEEE
T ss_pred CCCEEEEecCcccc-hhHHHHHHHHHHHHhhCCC-cccccccc-----cccccccceEEEeccccc-hhhhhcccceeee
Confidence 56788899998642 2344444555444455566 77776654 112222211111111111 2344433332222
Q ss_pred CCCCCCChHHHHHHHcCCCEEEcCCCC----cccccc-CCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhc
Q 043412 268 SRGEGWGRPLVEAMSMGLPVIATNWSG----PTEYLT-EENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVS 342 (383)
Q Consensus 268 s~~e~~~~~~~Ea~a~G~PvI~~~~~g----~~e~v~-~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~ 342 (383)
..|.-.+++||+.+|+|+|+-+.-+ ....+. .+.|..++.. .-+.+++.++|+++++
T Consensus 347 --tHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~----------------~~~~~~l~~ai~~vl~ 408 (500)
T PF00201_consen 347 --THGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKN----------------DLTEEELRAAIREVLE 408 (500)
T ss_dssp --ES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGG----------------C-SHHHHHHHHHHHHH
T ss_pred --eccccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEec----------------CCcHHHHHHHHHHHHh
Confidence 3455679999999999999987732 122222 2445444432 2278999999999999
Q ss_pred CHHHHHHH
Q 043412 343 NVDEAKAK 350 (383)
Q Consensus 343 ~~~~~~~~ 350 (383)
|+..+++.
T Consensus 409 ~~~y~~~a 416 (500)
T PF00201_consen 409 NPSYKENA 416 (500)
T ss_dssp SHHHHHHH
T ss_pred hhHHHHHH
Confidence 98755443
No 142
>PLN02670 transferase, transferring glycosyl groups
Probab=96.99 E-value=0.022 Score=54.08 Aligned_cols=175 Identities=13% Similarity=0.074 Sum_probs=91.4
Q ss_pred CCcEEEEEeecccc--ccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCC-----CchHHHHHHHHhhCCCC--C--cccc
Q 043412 188 SKEFVFLSVFKWEY--RKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSG-----RDFGNKIVNFVEDSDLE--K--PDDG 256 (383)
Q Consensus 188 ~~~~~i~~~g~~~~--~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~-----~~~~~~~~~~~~~~~~~--~--~v~~ 256 (383)
+...++++.|.... ...+..+..++... +. .|+++-..+... ....+.+.+.++..|+. . .-..
T Consensus 277 ~~sVvyvsfGS~~~l~~~q~~ela~gl~~s----~~-~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~ 351 (472)
T PLN02670 277 VNSVVYVALGTEASLRREEVTELALGLEKS----ET-PFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVK 351 (472)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHC----CC-CEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHH
Confidence 45788889997642 33444455555443 22 455543321110 01223333334333331 0 0023
Q ss_pred ccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCC----cccccc-CCCceeeecccccccccCCCCcccccCCCHH
Q 043412 257 WAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSG----PTEYLT-EENGYPLLVGRMSEVTEGPFKGHFWAEPSVD 331 (383)
Q Consensus 257 ~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g----~~e~v~-~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~ 331 (383)
+++...+..+- ..+.-++++||+++|+|+|+.+..+ ....+. .+.|..+.... ..| .-+.+
T Consensus 352 IL~H~~v~~Fv--tHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~--------~~~----~~~~e 417 (472)
T PLN02670 352 ILSHESVGGFL--THCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDE--------RDG----SFTSD 417 (472)
T ss_pred HhcCcccceee--ecCCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccc--------cCC----cCcHH
Confidence 34444442222 2344579999999999999987632 122222 24444443210 001 12799
Q ss_pred HHHHHHHHHhcCHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 043412 332 KLRALMRLVVSNVD--EAKAKGKQAREDMIQRFSPETVAGIVTDHIKDILSS 381 (383)
Q Consensus 332 ~la~~i~~ll~~~~--~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~~~~ 381 (383)
++.+++++++.+++ .+++-.++.++.+...=+.+.+++.+.+.+.+....
T Consensus 418 ~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 469 (472)
T PLN02670 418 SVAESVRLAMVDDAGEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLRENRSS 469 (472)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhccc
Confidence 99999999998752 222223333344556667777777777777665543
No 143
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=96.84 E-value=0.015 Score=57.06 Aligned_cols=127 Identities=15% Similarity=0.013 Sum_probs=89.1
Q ss_pred CCCCCCcEEEEEeeccccccCHHHHHH----HHHHHh-ccCCCeEEEEEeCCCCCCCchH---HHHHHHHhhCCCCCcc-
Q 043412 184 MNTSSKEFVFLSVFKWEYRKGWDVLLK----AYLEEF-SKADGVVLYLLTNPYHSGRDFG---NKIVNFVEDSDLEKPD- 254 (383)
Q Consensus 184 ~~~~~~~~~i~~~g~~~~~K~~~~ll~----a~~~l~-~~~~~~~l~i~G~~~~~~~~~~---~~~~~~~~~~~~~~~v- 254 (383)
....++.++++++-|+.++|...+.+. ....++ ...|.+.+++.|...+.+..-. ..+.+.++..+...+|
T Consensus 481 i~~~p~~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVv 560 (750)
T COG0058 481 IEVDPNALFDGQARRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVV 560 (750)
T ss_pred CccCCCcceeeeehhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEE
Confidence 335588999999999999998766543 334444 3356788888887654322222 2223333333332222
Q ss_pred ----------ccccccCceEEecCC--CCCCChHHHHHHHcCCCEEEcCCCCcccccc---CCCceeeecc
Q 043412 255 ----------DGWAPAADVFVLPSR--GEGWGRPLVEAMSMGLPVIATNWSGPTEYLT---EENGYPLLVG 310 (383)
Q Consensus 255 ----------~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~---~~~g~~~~~~ 310 (383)
..++.+||+-...|. .|..|.+-|-++..|.+.|+|-.|...|..+ ..||+++...
T Consensus 561 Fl~nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e~vg~~N~~~fG~~ 631 (750)
T COG0058 561 FLPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFGET 631 (750)
T ss_pred EeCCCChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHHhcCCCceEEeCCc
Confidence 356699999998876 6999999999999999999999999999984 4599988643
No 144
>PLN02208 glycosyltransferase family protein
Probab=96.48 E-value=0.054 Score=51.13 Aligned_cols=152 Identities=14% Similarity=0.099 Sum_probs=78.6
Q ss_pred CCcEEEEEeeccccccCHHHHHHHHHHH-hccCCCeEEEEEeC-CC-CCCCchHHHHHHHHhhCCCCCccccccccCceE
Q 043412 188 SKEFVFLSVFKWEYRKGWDVLLKAYLEE-FSKADGVVLYLLTN-PY-HSGRDFGNKIVNFVEDSDLEKPDDGWAPAADVF 264 (383)
Q Consensus 188 ~~~~~i~~~g~~~~~K~~~~ll~a~~~l-~~~~~~~~l~i~G~-~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~adi~ 264 (383)
++..++++.|.... -..+.+.+.+..+ ....| ..+++--. +. .......+.+.+.++..|+. +..+..+.+++
T Consensus 250 ~~sVvyvSfGS~~~-l~~~q~~e~~~~l~~s~~p-f~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~--v~~W~PQ~~iL 325 (442)
T PLN02208 250 PKSVVFCSLGSQII-LEKDQFQELCLGMELTGLP-FLIAVKPPRGSSTVQEGLPEGFEERVKGRGVV--WGGWVQQPLIL 325 (442)
T ss_pred CCcEEEEecccccc-CCHHHHHHHHHHHHhCCCc-EEEEEeCCCcccchhhhCCHHHHHHHhcCCcE--eeccCCHHHHh
Confidence 45788999998752 2445566665554 34433 34444321 10 00011223344444444442 22333333443
Q ss_pred EecCC----CCCCChHHHHHHHcCCCEEEcCCCC----ccccccC--CCceeeecccccccccCCCCcccccCCCHHHHH
Q 043412 265 VLPSR----GEGWGRPLVEAMSMGLPVIATNWSG----PTEYLTE--ENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLR 334 (383)
Q Consensus 265 v~ps~----~e~~~~~~~Ea~a~G~PvI~~~~~g----~~e~v~~--~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la 334 (383)
-.|+. ..+.-++++||+++|+|+|+-+..+ ....+.+ +.|..++.. ..| . -+.+++.
T Consensus 326 ~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~---------~~~-~---~~~~~l~ 392 (442)
T PLN02208 326 DHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSRE---------KTG-W---FSKESLS 392 (442)
T ss_pred cCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccc---------cCC-c---CcHHHHH
Confidence 33331 2344579999999999999987732 1222222 333333211 001 1 2889999
Q ss_pred HHHHHHhcCH-HHHHHHHHHHHH
Q 043412 335 ALMRLVVSNV-DEAKAKGKQARE 356 (383)
Q Consensus 335 ~~i~~ll~~~-~~~~~~~~~a~~ 356 (383)
++++++++++ +..+++.+++++
T Consensus 393 ~ai~~~m~~~~e~g~~~r~~~~~ 415 (442)
T PLN02208 393 NAIKSVMDKDSDLGKLVRSNHTK 415 (442)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 9999999865 344555555443
No 145
>PLN02764 glycosyltransferase family protein
Probab=96.46 E-value=0.075 Score=50.16 Aligned_cols=178 Identities=11% Similarity=0.004 Sum_probs=88.3
Q ss_pred CCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeC-CCCC-CCchHHHHHHHHhhCCCCC----cccccccc
Q 043412 187 SSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTN-PYHS-GRDFGNKIVNFVEDSDLEK----PDDGWAPA 260 (383)
Q Consensus 187 ~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~-~~~~-~~~~~~~~~~~~~~~~~~~----~v~~~~~~ 260 (383)
+++..++++.|.... -..+.+-+.+..|.....++..++--. +... .....+.+.+.++..|+.- .-..+++.
T Consensus 255 ~~~sVvyvsfGS~~~-~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h 333 (453)
T PLN02764 255 EPDSVVFCALGSQVI-LEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSH 333 (453)
T ss_pred CCCceEEEeeccccc-CCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcC
Confidence 356788999998633 233445555545433333444444311 1000 0112223333333334310 01233444
Q ss_pred CceEEecCCCCCCChHHHHHHHcCCCEEEcCCCC----ccccccC--CCceeeecccccccccCCCCcccccCCCHHHHH
Q 043412 261 ADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSG----PTEYLTE--ENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLR 334 (383)
Q Consensus 261 adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g----~~e~v~~--~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la 334 (383)
..+..+- ..+.-.+++||+++|+|+|+-+..+ ....+.+ +.|+-+... ..+ .-+.+++.
T Consensus 334 ~~v~~Fv--tH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~---------~~~----~~~~e~i~ 398 (453)
T PLN02764 334 PSVGCFV--SHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVARE---------ETG----WFSKESLR 398 (453)
T ss_pred cccCeEE--ecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccc---------cCC----ccCHHHHH
Confidence 3332222 3345579999999999999988732 1222222 223222110 000 12889999
Q ss_pred HHHHHHhcCH-HHHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHHHHh
Q 043412 335 ALMRLVVSNV-DEAKAKGKQAR---EDMIQRFSPETVAGIVTDHIKDILS 380 (383)
Q Consensus 335 ~~i~~ll~~~-~~~~~~~~~a~---~~~~~~~s~~~~~~~~~~~~~~~~~ 380 (383)
++++++++++ +..+++.++++ +.+.+.=|-....+++.+.+++..+
T Consensus 399 ~av~~vm~~~~~~g~~~r~~a~~~~~~~~~~GSS~~~l~~lv~~~~~~~~ 448 (453)
T PLN02764 399 DAINSVMKRDSEIGNLVKKNHTKWRETLASPGLLTGYVDNFIESLQDLVS 448 (453)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Confidence 9999999874 33444444443 3334444455555666666655544
No 146
>PLN00414 glycosyltransferase family protein
Probab=96.43 E-value=0.068 Score=50.56 Aligned_cols=154 Identities=11% Similarity=-0.011 Sum_probs=79.7
Q ss_pred CCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeC-CCC-CCCchHHHHHHHHhhCCCC--C--cccccccc
Q 043412 187 SSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTN-PYH-SGRDFGNKIVNFVEDSDLE--K--PDDGWAPA 260 (383)
Q Consensus 187 ~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~-~~~-~~~~~~~~~~~~~~~~~~~--~--~v~~~~~~ 260 (383)
++...++++.|..... ..+.+.+.+..|.....++-.++... +.. ......+.+.+.++..|+. . .-..+++.
T Consensus 250 ~~~sVvyvsfGS~~~~-~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h 328 (446)
T PLN00414 250 EPGSVVFCAFGTQFFF-EKDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSH 328 (446)
T ss_pred CCCceEEEeecccccC-CHHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcC
Confidence 4567889999987532 23455555554433333333333211 100 0112234455555544432 0 11244444
Q ss_pred CceEEecCCCCCCChHHHHHHHcCCCEEEcCCCC----ccccccC--CCceeeecccccccccCCCCcccccCCCHHHHH
Q 043412 261 ADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSG----PTEYLTE--ENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLR 334 (383)
Q Consensus 261 adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g----~~e~v~~--~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la 334 (383)
..+..+- ..+.-++++||+++|+|+|+.+..+ ....+.+ +.|..+..+ ..| ..+.+++.
T Consensus 329 ~~v~~fv--tH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~---------~~~----~~~~~~i~ 393 (446)
T PLN00414 329 PSVGCFV--NHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQRE---------DSG----WFSKESLR 393 (446)
T ss_pred CccceEE--ecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccc---------cCC----ccCHHHHH
Confidence 5332222 2344579999999999999987632 2222322 333333210 001 12899999
Q ss_pred HHHHHHhcCH-HHHHHHHHHHHH
Q 043412 335 ALMRLVVSNV-DEAKAKGKQARE 356 (383)
Q Consensus 335 ~~i~~ll~~~-~~~~~~~~~a~~ 356 (383)
+++++++.++ +..+++.+++++
T Consensus 394 ~~v~~~m~~~~e~g~~~r~~a~~ 416 (446)
T PLN00414 394 DTVKSVMDKDSEIGNLVKRNHKK 416 (446)
T ss_pred HHHHHHhcCChhhHHHHHHHHHH
Confidence 9999999864 445555555554
No 147
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=96.40 E-value=0.0027 Score=52.23 Aligned_cols=141 Identities=15% Similarity=0.109 Sum_probs=62.5
Q ss_pred CChhHHHHHHHHHHHhcccCCCceeeeecCCCcc-cc------hhhcCCChhhhhHHHHHHhhhcCCCccEEEecCCCCC
Q 043412 8 GGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQ-SL------QFWEGLPHHMRNLAVELYNTECRTNETVVICHSEPGA 80 (383)
Q Consensus 8 ~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~l~~~~~~~~pDiV~~~~~~~~ 80 (383)
-|-...+..+++.|.++.....+.+.+....... -. -...-+|.+ ......++++..+||+++.... ..
T Consensus 31 vGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D---~~~~~~rfl~~~~P~~~i~~Et-El 106 (186)
T PF04413_consen 31 VGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLD---FPWAVRRFLDHWRPDLLIWVET-EL 106 (186)
T ss_dssp HHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---S---SHHHHHHHHHHH--SEEEEES----
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCcc---CHHHHHHHHHHhCCCEEEEEcc-cc
Confidence 3556788999999998754444333333111111 00 001123333 3344566777889999888753 22
Q ss_pred CCCcccccCCCCCCCCCCCccccc-ceeeeecCCCCHHHHHhcCCCCEEEEeChHHHHHHHhcCCCCCCeEEecC
Q 043412 81 WYPPLFDTLPCPPTPGYGDFMAVI-GRTMFETDRVSPEHVKRCNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQ 154 (383)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~n 154 (383)
| +.++.......+..+ -..... ........+++......++..|.|++.|+..++.+.+.|.+++++.+.+|
T Consensus 107 W-Pnll~~a~~~~ip~~-LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs~~da~r~~~lG~~~~~v~v~Gn 179 (186)
T PF04413_consen 107 W-PNLLREAKRRGIPVV-LVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQSEADAERFRKLGAPPERVHVTGN 179 (186)
T ss_dssp --HHHHHH-----S-EE-EEEE--------------HHHHHHGGG-SEEEESSHHHHHHHHTTT-S--SEEE---
T ss_pred C-HHHHHHHhhcCCCEE-EEeeeeccccchhhhhhHHHHHHHHHhCCEEEECCHHHHHHHHHcCCCcceEEEeCc
Confidence 3 334333322222000 000111 11111112334455556899999999999999999999999999999987
No 148
>PLN02448 UDP-glycosyltransferase family protein
Probab=96.40 E-value=0.046 Score=52.05 Aligned_cols=144 Identities=13% Similarity=0.117 Sum_probs=73.6
Q ss_pred CCcEEEEEeecccc--ccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC-C--ccccccccCc
Q 043412 188 SKEFVFLSVFKWEY--RKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE-K--PDDGWAPAAD 262 (383)
Q Consensus 188 ~~~~~i~~~g~~~~--~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~-~--~v~~~~~~ad 262 (383)
+...+++..|.... ...+..++++++. .+..++++..+. ...+.+.....++. + .-..+++..+
T Consensus 273 ~~~vvyvsfGs~~~~~~~~~~~~~~~l~~-----~~~~~lw~~~~~------~~~~~~~~~~~~~v~~w~pQ~~iL~h~~ 341 (459)
T PLN02448 273 EGSVLYVSLGSFLSVSSAQMDEIAAGLRD-----SGVRFLWVARGE------ASRLKEICGDMGLVVPWCDQLKVLCHSS 341 (459)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHh-----CCCCEEEEEcCc------hhhHhHhccCCEEEeccCCHHHHhccCc
Confidence 45678888887632 2224444444443 255777655431 11122222111111 1 0123445555
Q ss_pred eEEecCCCCCCChHHHHHHHcCCCEEEcCCCCc----cccccC--CCceeeecccccccccCCCCcccccCCCHHHHHHH
Q 043412 263 VFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGP----TEYLTE--ENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRAL 336 (383)
Q Consensus 263 i~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~----~e~v~~--~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~ 336 (383)
+..+- ..+.-.+++||+++|+|+|+-+..+- ...+.+ +.|.-+.... + . -...+.++++++
T Consensus 342 v~~fv--tHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~------~--~---~~~~~~~~l~~a 408 (459)
T PLN02448 342 VGGFW--THCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREV------G--E---ETLVGREEIAEL 408 (459)
T ss_pred cceEE--ecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEeccc------c--c---CCcCcHHHHHHH
Confidence 52222 23445699999999999999876421 222222 3444432110 0 0 011288999999
Q ss_pred HHHHhcCH-HHHHHHHHHHH
Q 043412 337 MRLVVSNV-DEAKAKGKQAR 355 (383)
Q Consensus 337 i~~ll~~~-~~~~~~~~~a~ 355 (383)
+++++.++ +.-++|.+++.
T Consensus 409 v~~vl~~~~~~~~~~r~~a~ 428 (459)
T PLN02448 409 VKRFMDLESEEGKEMRRRAK 428 (459)
T ss_pred HHHHhcCCchhHHHHHHHHH
Confidence 99999864 33344444443
No 149
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=96.31 E-value=0.048 Score=48.37 Aligned_cols=183 Identities=15% Similarity=0.085 Sum_probs=93.7
Q ss_pred CCCCEEEEeChHHHHHHHh-cCCCC-CCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccc
Q 043412 123 NRMDFVWVPTDFHVSTFIR-SGVDP-AKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWE 200 (383)
Q Consensus 123 ~~ad~vi~~s~~~~~~~~~-~~~~~-~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~ 200 (383)
+..|.|++..+-....+.. ++..+ -+-.+.+.|.=-.. .+......... +++..+++.+|.
T Consensus 166 r~yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~vq~~-~~~~~~p~~~~--------------pE~~~Ilvs~GG-- 228 (400)
T COG4671 166 RFYDLVLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFVQRS-LPHLPLPPHEA--------------PEGFDILVSVGG-- 228 (400)
T ss_pred HhheEEEEecCccccChhhcCCccHhhhhheeEeEEeecc-CcCCCCCCcCC--------------CccceEEEecCC--
Confidence 6789999986655544444 65432 22234444432000 01111010000 244667777774
Q ss_pred cccCHHHHHHHHHHHhccCCCe---EEEEEeCCCCCCCchHHHHHHHHhhC------CCCCccccccccCceEEecCCCC
Q 043412 201 YRKGWDVLLKAYLEEFSKADGV---VLYLLTNPYHSGRDFGNKIVNFVEDS------DLEKPDDGWAPAADVFVLPSRGE 271 (383)
Q Consensus 201 ~~K~~~~ll~a~~~l~~~~~~~---~l~i~G~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~adi~v~ps~~e 271 (383)
..-|.+++-.++ ......+++ -+++.|...+ ....+.+...+.+. .+.+++..++..|+.+|.-+-
T Consensus 229 G~dG~eLi~~~l-~A~~~l~~l~~~~~ivtGP~MP--~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~vVSm~G-- 303 (400)
T COG4671 229 GADGAELIETAL-AAAQLLAGLNHKWLIVTGPFMP--EAQRQKLLASAPKRPHISIFEFRNDFESLLAGARLVVSMGG-- 303 (400)
T ss_pred ChhhHHHHHHHH-HHhhhCCCCCcceEEEeCCCCC--HHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhheeeeccc--
Confidence 334444433333 222222333 3555554322 23334444444432 223777899999999995542
Q ss_pred CCChHHHHHHHcCCCEEEcCCC-Cccccc-cC----CCceeeecccccccccCCCCcccccCC-CHHHHHHHHHHHhcCH
Q 043412 272 GWGRPLVEAMSMGLPVIATNWS-GPTEYL-TE----ENGYPLLVGRMSEVTEGPFKGHFWAEP-SVDKLRALMRLVVSNV 344 (383)
Q Consensus 272 ~~~~~~~Ea~a~G~PvI~~~~~-g~~e~v-~~----~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~la~~i~~ll~~~ 344 (383)
+ +++.|-+++|+|.+.-+.. +-.|.. .. .-|+ -..+.++. +++.+++++..+++.|
T Consensus 304 -Y-NTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL---------------~dvL~pe~lt~~~La~al~~~l~~P 366 (400)
T COG4671 304 -Y-NTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGL---------------VDVLLPENLTPQNLADALKAALARP 366 (400)
T ss_pred -c-hhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCc---------------ceeeCcccCChHHHHHHHHhcccCC
Confidence 2 5788999999997766553 222222 11 1221 01122222 8999999999998843
No 150
>PLN03007 UDP-glucosyltransferase family protein
Probab=96.31 E-value=0.11 Score=49.90 Aligned_cols=142 Identities=11% Similarity=0.038 Sum_probs=67.8
Q ss_pred CCcEEEEEeecccc--ccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCC----CchHHHHHHHHhhCCCC--C--ccccc
Q 043412 188 SKEFVFLSVFKWEY--RKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSG----RDFGNKIVNFVEDSDLE--K--PDDGW 257 (383)
Q Consensus 188 ~~~~~i~~~g~~~~--~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~----~~~~~~~~~~~~~~~~~--~--~v~~~ 257 (383)
+...+++..|.... .+.+..+++++... +..|+++-..+... ....+.+.+.+...|+. + .-..+
T Consensus 284 ~~svvyvsfGS~~~~~~~~~~~~~~~l~~~-----~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~i 358 (482)
T PLN03007 284 PDSVIYLSFGSVASFKNEQLFEIAAGLEGS-----GQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLI 358 (482)
T ss_pred CCceEEEeecCCcCCCHHHHHHHHHHHHHC-----CCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHH
Confidence 45688889997643 23344444444332 33444433221110 01122333333332321 0 01244
Q ss_pred cccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCc----cccccC--CCceeeecccccccccCCCCcccccCCCHH
Q 043412 258 APAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGP----TEYLTE--ENGYPLLVGRMSEVTEGPFKGHFWAEPSVD 331 (383)
Q Consensus 258 ~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~----~e~v~~--~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~ 331 (383)
+..+++-.+-+ .+.-++++||+++|+|+|+.+..+- ...+.+ +.|+-+.... . .+.-...-+.+
T Consensus 359 L~h~~v~~fvt--H~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~---~-----~~~~~~~~~~~ 428 (482)
T PLN03007 359 LDHQATGGFVT--HCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKK---L-----VKVKGDFISRE 428 (482)
T ss_pred hccCccceeee--cCcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEecccc---c-----cccccCcccHH
Confidence 45555422222 3445699999999999999877321 111111 2222221100 0 00000122899
Q ss_pred HHHHHHHHHhcCH
Q 043412 332 KLRALMRLVVSNV 344 (383)
Q Consensus 332 ~la~~i~~ll~~~ 344 (383)
++++++++++.++
T Consensus 429 ~l~~av~~~m~~~ 441 (482)
T PLN03007 429 KVEKAVREVIVGE 441 (482)
T ss_pred HHHHHHHHHhcCc
Confidence 9999999999876
No 151
>PRK14986 glycogen phosphorylase; Provisional
Probab=96.29 E-value=0.02 Score=57.02 Aligned_cols=125 Identities=18% Similarity=0.069 Sum_probs=89.7
Q ss_pred CCCCCCcEEEEEeeccccccCHHH-HHHH---HHHHhccC----CCeEEEEEeCCCCCCCchHHHHHHHHhhC-------
Q 043412 184 MNTSSKEFVFLSVFKWEYRKGWDV-LLKA---YLEEFSKA----DGVVLYLLTNPYHSGRDFGNKIVNFVEDS------- 248 (383)
Q Consensus 184 ~~~~~~~~~i~~~g~~~~~K~~~~-ll~a---~~~l~~~~----~~~~l~i~G~~~~~~~~~~~~~~~~~~~~------- 248 (383)
..++++.+.++++-|+.++|...+ ++.. +.+++..- .+.++++.|...+.... .+.+.+++...
T Consensus 537 ~~ldp~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~-aK~iIk~I~~va~~in~D 615 (815)
T PRK14986 537 VVVNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYM-AKHIIHLINDVAKVINND 615 (815)
T ss_pred CccCcccceeeeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHH-HHHHHHHHHHHHHHhccC
Confidence 457789999999999999998887 5544 55554431 35888888886553322 23333332221
Q ss_pred -CCCCc--c-----------ccccccCceEEecCC--CCCCChHHHHHHHcCCCEEEcCCCCcccccc---CCCceeeec
Q 043412 249 -DLEKP--D-----------DGWAPAADVFVLPSR--GEGWGRPLVEAMSMGLPVIATNWSGPTEYLT---EENGYPLLV 309 (383)
Q Consensus 249 -~~~~~--v-----------~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~---~~~g~~~~~ 309 (383)
.+.+. + ..++.+||+-...|. .|..|.+=|-+|.-|.+.++|-.|...|+.+ ++||+.+..
T Consensus 616 p~v~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e~vG~eN~~~fG~ 695 (815)
T PRK14986 616 PQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENIFIFGN 695 (815)
T ss_pred hhhcCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHHhcCCCcEEEeCC
Confidence 22221 1 356699999998876 6999999999999999999999999999887 459998864
No 152
>PLN03004 UDP-glycosyltransferase
Probab=96.01 E-value=0.071 Score=50.41 Aligned_cols=140 Identities=11% Similarity=0.058 Sum_probs=74.2
Q ss_pred CCcEEEEEeeccc--cccCHHHHHHHHHHHhccCCCeEEEEEeCCCCC-C------Cc-hHHHHHHHHhhCCCC--C--c
Q 043412 188 SKEFVFLSVFKWE--YRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHS-G------RD-FGNKIVNFVEDSDLE--K--P 253 (383)
Q Consensus 188 ~~~~~i~~~g~~~--~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~-~------~~-~~~~~~~~~~~~~~~--~--~ 253 (383)
+...++++.|... +.+....+..++... +. .|+++-..+.. + .. ..+.+.+.++..|+. + .
T Consensus 269 ~~sVvyvsfGS~~~~~~~q~~ela~gL~~s----~~-~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~P 343 (451)
T PLN03004 269 EKSVVFLCFGSLGLFSKEQVIEIAVGLEKS----GQ-RFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAP 343 (451)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHC----CC-CEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCC
Confidence 4578899999873 233444455555432 22 55555442110 0 00 112233333333331 0 0
Q ss_pred cccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCC----Ccccccc-C-CCceeeecccccccccCCCCcccccC
Q 043412 254 DDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWS----GPTEYLT-E-ENGYPLLVGRMSEVTEGPFKGHFWAE 327 (383)
Q Consensus 254 v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~----g~~e~v~-~-~~g~~~~~~~~~~~~~~~~~g~~~~~ 327 (383)
-..+++.+++..+-+ .+.-++++||+++|+|+|+.+.. .....+. . +.|..++.+ ..| .
T Consensus 344 Q~~iL~H~~v~~FvT--H~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~---------~~~----~ 408 (451)
T PLN03004 344 QVPVLNHKAVGGFVT--HCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNES---------ETG----F 408 (451)
T ss_pred HHHHhCCCccceEec--cCcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCC---------cCC----c
Confidence 124556666633333 34456999999999999998763 2222222 2 344434311 001 1
Q ss_pred CCHHHHHHHHHHHhcCHHHH
Q 043412 328 PSVDKLRALMRLVVSNVDEA 347 (383)
Q Consensus 328 ~~~~~la~~i~~ll~~~~~~ 347 (383)
.+.+++++++++++++++.+
T Consensus 409 ~~~e~l~~av~~vm~~~~~r 428 (451)
T PLN03004 409 VSSTEVEKRVQEIIGECPVR 428 (451)
T ss_pred cCHHHHHHHHHHHhcCHHHH
Confidence 28999999999999876543
No 153
>PLN00164 glucosyltransferase; Provisional
Probab=95.73 E-value=0.24 Score=47.40 Aligned_cols=87 Identities=13% Similarity=0.061 Sum_probs=47.1
Q ss_pred cccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCC----ccccc-cC-CCceeeecccccccccCCCCcccccCCC
Q 043412 256 GWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSG----PTEYL-TE-ENGYPLLVGRMSEVTEGPFKGHFWAEPS 329 (383)
Q Consensus 256 ~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g----~~e~v-~~-~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 329 (383)
.+++..++..+-+ .+.-.+++||+++|+|+|+-+.-+ ....+ +. +.|+-+... ....+ .-+
T Consensus 351 ~iL~h~~vg~fvt--H~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~-------~~~~~----~~~ 417 (480)
T PLN00164 351 EILAHAAVGGFVT--HCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVD-------RKRDN----FVE 417 (480)
T ss_pred HHhcCcccCeEEe--ecccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccc-------cccCC----cCc
Confidence 3445555422222 233468999999999999987632 12122 21 344333210 00000 127
Q ss_pred HHHHHHHHHHHhcCHH-HHHHHHHHHH
Q 043412 330 VDKLRALMRLVVSNVD-EAKAKGKQAR 355 (383)
Q Consensus 330 ~~~la~~i~~ll~~~~-~~~~~~~~a~ 355 (383)
.++++++|++++.+++ ..+.|.++++
T Consensus 418 ~e~l~~av~~vm~~~~~~~~~~r~~a~ 444 (480)
T PLN00164 418 AAELERAVRSLMGGGEEEGRKAREKAA 444 (480)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 8999999999997643 2334444433
No 154
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=95.72 E-value=0.041 Score=54.62 Aligned_cols=125 Identities=16% Similarity=0.068 Sum_probs=88.7
Q ss_pred CCCCCCcEEEEEeeccccccCHHH-HHHH---HHHHhcc----CCCeEEEEEeCCCCCCCchHHHHHHHHhhC----CC-
Q 043412 184 MNTSSKEFVFLSVFKWEYRKGWDV-LLKA---YLEEFSK----ADGVVLYLLTNPYHSGRDFGNKIVNFVEDS----DL- 250 (383)
Q Consensus 184 ~~~~~~~~~i~~~g~~~~~K~~~~-ll~a---~~~l~~~----~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~----~~- 250 (383)
..++++.+..+++-|+.++|...+ ++.. +.+++.. ..+.++++.|...+... ..+.+.+++... +-
T Consensus 523 ~~ldp~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIklI~~va~~in~D 601 (798)
T PRK14985 523 IEINPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYY-LAKNIIFAINKVAEVINND 601 (798)
T ss_pred CccCchhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcH-HHHHHHHHHHHHHHHhcCC
Confidence 457789999999999999998777 5444 4555443 12478888887654332 223333333322 11
Q ss_pred ---CCc--c-----------ccccccCceEEecCC--CCCCChHHHHHHHcCCCEEEcCCCCcccccc---CCCceeeec
Q 043412 251 ---EKP--D-----------DGWAPAADVFVLPSR--GEGWGRPLVEAMSMGLPVIATNWSGPTEYLT---EENGYPLLV 309 (383)
Q Consensus 251 ---~~~--v-----------~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~---~~~g~~~~~ 309 (383)
.+. + ..++.+||+-...|. .|..|.+=|-+|..|.+.++|-.|...|+.+ ++|++++..
T Consensus 602 p~v~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e~vG~eN~f~fG~ 681 (798)
T PRK14985 602 PLVGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENIFIFGH 681 (798)
T ss_pred hhhCCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHHHhCcCcEEEeCC
Confidence 121 1 356699999998876 6999999999999999999999999888887 569988864
No 155
>PLN02554 UDP-glycosyltransferase family protein
Probab=95.67 E-value=0.12 Score=49.55 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=40.6
Q ss_pred CCCChHHHHHHHcCCCEEEcCCCC----cc-ccccC-CCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhc-C
Q 043412 271 EGWGRPLVEAMSMGLPVIATNWSG----PT-EYLTE-ENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVS-N 343 (383)
Q Consensus 271 e~~~~~~~Ea~a~G~PvI~~~~~g----~~-e~v~~-~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~-~ 343 (383)
.+.-.+++||+.+|+|+|+.+..+ .. ..++. +.|..++... ..+...|. -..-+.+++.+++++++. +
T Consensus 367 H~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~----~~~~~~~~-~~~~~~e~l~~av~~vm~~~ 441 (481)
T PLN02554 367 HCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYW----RGDLLAGE-METVTAEEIERGIRCLMEQD 441 (481)
T ss_pred cCccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccc----cccccccc-cCeEcHHHHHHHHHHHhcCC
Confidence 344569999999999999987632 11 11222 4444443100 00000000 001289999999999996 5
Q ss_pred HHHHH
Q 043412 344 VDEAK 348 (383)
Q Consensus 344 ~~~~~ 348 (383)
++.++
T Consensus 442 ~~~r~ 446 (481)
T PLN02554 442 SDVRK 446 (481)
T ss_pred HHHHH
Confidence 54443
No 156
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=95.58 E-value=0.071 Score=50.58 Aligned_cols=157 Identities=15% Similarity=0.107 Sum_probs=96.0
Q ss_pred ccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC--CccccccccCceEEecCC-CCCCChH
Q 043412 200 EYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE--KPDDGWAPAADVFVLPSR-GEGWGRP 276 (383)
Q Consensus 200 ~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~adi~v~ps~-~e~~~~~ 276 (383)
..+++-+..++++.+. -+++-.|.+.. .....+-..+.+.|+. +++..+++.+.++|-... +| |=+
T Consensus 288 ~~w~~k~~~l~~l~~~----~eih~tV~~~~-----~~~~~~P~~V~NHG~l~~~ef~~lL~~akvfiGlGfP~E--gPa 356 (559)
T PF15024_consen 288 YMWKGKEKYLDVLHKY----MEIHGTVYDEP-----QRPPNVPSFVKNHGILSGDEFQQLLRKAKVFIGLGFPYE--GPA 356 (559)
T ss_pred hhhcCcHHHHHHHHhh----cEEEEEeccCC-----CCCcccchhhhhcCcCCHHHHHHHHHhhhEeeecCCCCC--CCC
Confidence 3466777777777543 35555554432 2234566678888885 677889999999995433 33 347
Q ss_pred HHHHHHcCCCEEEcCCCCc-----cccccCC-Cceeeecccccccc--cCCCCcccccCCCHHHHHHHHHHHhcCHHHHH
Q 043412 277 LVEAMSMGLPVIATNWSGP-----TEYLTEE-NGYPLLVGRMSEVT--EGPFKGHFWAEPSVDKLRALMRLVVSNVDEAK 348 (383)
Q Consensus 277 ~~Ea~a~G~PvI~~~~~g~-----~e~v~~~-~g~~~~~~~~~~~~--~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~ 348 (383)
.+||++.|+|-|-...... .+++.+. +-.-+.+. .|++. .+...=..++..|.+++.+||+++++++-
T Consensus 357 PlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQ-hPY~e~~iG~PhVytVd~~n~~~v~~Avk~il~~~v--- 432 (559)
T PF15024_consen 357 PLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQ-HPYAEEFIGEPHVYTVDINNSTEVEAAVKAILATPV--- 432 (559)
T ss_pred hHHHHHcCCccccccCCCCCcccccccccCCCCcceeccC-ChHHHhhCCCCeEEEEcCCCHHHHHHHHHHHHhcCC---
Confidence 9999999999888765322 1222211 11111110 12222 11122234444599999999999998652
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 043412 349 AKGKQAREDMIQRFSPETVAGIVTDHIKD 377 (383)
Q Consensus 349 ~~~~~a~~~~~~~~s~~~~~~~~~~~~~~ 377 (383)
.-++--.|+-+.+.+|+..+++.
T Consensus 433 ------~Py~P~efT~egmLeRv~~~ie~ 455 (559)
T PF15024_consen 433 ------EPYLPYEFTCEGMLERVNALIEK 455 (559)
T ss_pred ------CCcCCcccCHHHHHHHHHHHHHh
Confidence 12345679999999999877763
No 157
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=95.55 E-value=0.92 Score=38.80 Aligned_cols=147 Identities=15% Similarity=0.079 Sum_probs=76.1
Q ss_pred CCCCEEEEeChHHHHHHHhcCCCCCCeEEe---cCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeecc
Q 043412 123 NRMDFVWVPTDFHVSTFIRSGVDPAKVVKI---VQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKW 199 (383)
Q Consensus 123 ~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi---~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~ 199 (383)
...|.||++-++..+.....+ .++.-| +|.|......+..... .++...+..++-+.+|.-
T Consensus 108 ~~fDlvivp~HD~~~~~s~~~---~Nilpi~Gs~h~Vt~~~lAa~~e~~-------------~~~~p~~rq~vAVlVGg~ 171 (329)
T COG3660 108 NHFDLVIVPYHDWREELSDQG---PNILPINGSPHNVTSQRLAALREAF-------------KHLLPLPRQRVAVLVGGN 171 (329)
T ss_pred ccceEEeccchhhhhhhhccC---CceeeccCCCCcccHHHhhhhHHHH-------------HhhCCCCCceEEEEecCC
Confidence 458999998877776543322 244433 2333222221111110 011123567888888876
Q ss_pred ccccCH--HHHHHHHHHHhccC--CCeEEEEEeCCCCCCCchHHHHHHHHhh-C----CCC--------CccccccccCc
Q 043412 200 EYRKGW--DVLLKAYLEEFSKA--DGVVLYLLTNPYHSGRDFGNKIVNFVED-S----DLE--------KPDDGWAPAAD 262 (383)
Q Consensus 200 ~~~K~~--~~ll~a~~~l~~~~--~~~~l~i~G~~~~~~~~~~~~~~~~~~~-~----~~~--------~~v~~~~~~ad 262 (383)
++.-.+ |...+....+.+.. ....+++.-+- ...+.++..++. + ++. .....+++.||
T Consensus 172 nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSR-----RTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ad 246 (329)
T COG3660 172 NKAFVFQEDKAHQFASLLVKILENQGGSFLISFSR-----RTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAAD 246 (329)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeec-----CCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcc
Confidence 544333 33333332222221 24566665443 223444444433 1 111 12357889999
Q ss_pred eEEecCCCCCCChHHHHHHHcCCCEEEcCCC
Q 043412 263 VFVLPSRGEGWGRPLVEAMSMGLPVIATNWS 293 (383)
Q Consensus 263 i~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~ 293 (383)
.++.+...- ..+-||.+.|+||-+-...
T Consensus 247 yii~TaDSi---nM~sEAasTgkPv~~~~~~ 274 (329)
T COG3660 247 YIISTADSI---NMCSEAASTGKPVFILEPP 274 (329)
T ss_pred eEEEecchh---hhhHHHhccCCCeEEEecC
Confidence 999886432 2467999999999876554
No 158
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=95.53 E-value=0.49 Score=45.29 Aligned_cols=137 Identities=15% Similarity=0.180 Sum_probs=67.5
Q ss_pred CCcEEEEEeecccc--ccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCC----CchHHHHHHHHhhCCCC--C--ccccc
Q 043412 188 SKEFVFLSVFKWEY--RKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSG----RDFGNKIVNFVEDSDLE--K--PDDGW 257 (383)
Q Consensus 188 ~~~~~i~~~g~~~~--~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~----~~~~~~~~~~~~~~~~~--~--~v~~~ 257 (383)
+...+++..|.+.. .+.+..+++++... +..|+++-+.+... ......+.+.+...|+. . .-..+
T Consensus 282 ~~svVyvsfGS~~~~~~~~~~ela~gL~~~-----~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~v 356 (477)
T PLN02863 282 DHKVVYVCFGSQVVLTKEQMEALASGLEKS-----GVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAI 356 (477)
T ss_pred CCceEEEEeeceecCCHHHHHHHHHHHHhC-----CCcEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHH
Confidence 35678888887643 22344444444332 34555554321110 01122333333333321 0 01233
Q ss_pred ccc--CceEEecCCCCCCChHHHHHHHcCCCEEEcCCCC----ccccc-cC-CCceeeecccccccccCCCCcccccCCC
Q 043412 258 APA--ADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSG----PTEYL-TE-ENGYPLLVGRMSEVTEGPFKGHFWAEPS 329 (383)
Q Consensus 258 ~~~--adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g----~~e~v-~~-~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 329 (383)
++. +++|| ..+.-.+++||+++|+|+|+-+..+ ....+ +. +.|.-+..+ .+ ...+
T Consensus 357 L~h~~v~~fv----tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~----------~~---~~~~ 419 (477)
T PLN02863 357 LSHRAVGAFL----THCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEG----------AD---TVPD 419 (477)
T ss_pred hcCCCcCeEE----ecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccC----------CC---CCcC
Confidence 443 33444 3344569999999999999987632 12222 22 344322110 00 1127
Q ss_pred HHHHHHHHHHHh-cCHHH
Q 043412 330 VDKLRALMRLVV-SNVDE 346 (383)
Q Consensus 330 ~~~la~~i~~ll-~~~~~ 346 (383)
.+++.+++++++ ++++.
T Consensus 420 ~~~v~~~v~~~m~~~~~~ 437 (477)
T PLN02863 420 SDELARVFMESVSENQVE 437 (477)
T ss_pred HHHHHHHHHHHhhccHHH
Confidence 889999999988 44443
No 159
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=95.48 E-value=0.19 Score=49.58 Aligned_cols=187 Identities=14% Similarity=0.094 Sum_probs=104.2
Q ss_pred cCCCCEEEEeChHHHHHHHh------cCCCCCCeEEecCCCcCCCCCCCC-C-----------CCCc--cccCCcc-ccc
Q 043412 122 CNRMDFVWVPTDFHVSTFIR------SGVDPAKVVKIVQPVHVGFFDPVN-C-----------DPID--LASIGKP-VLG 180 (383)
Q Consensus 122 ~~~ad~vi~~s~~~~~~~~~------~~~~~~~i~vi~ngid~~~~~~~~-~-----------~~~~--~~~~~~~-~l~ 180 (383)
+..+..+-.+|.-..+.+++ +...|+++.-+.|||....+-... + .... .....++ .+.
T Consensus 329 l~~S~~vNGVS~LH~ev~k~~~f~~f~~l~P~kf~nvTNGVh~rrWl~~~nP~L~~L~~~~iG~~W~~d~~~l~~l~~~~ 408 (713)
T PF00343_consen 329 LRGSHSVNGVSKLHGEVLKQMVFKDFYELWPEKFGNVTNGVHPRRWLSQANPELSELITEYIGDDWRTDLEQLEKLEKFA 408 (713)
T ss_dssp HHCESEEEESSHHHHHHHHHTTTHHHHHHSGGGEEE----B-TCCCCCCTSHHHHHHHHHHHTSGGGCSGGGGGGGGGGC
T ss_pred HHhcccccchHHHHHHHHHHHHhhhhhhcCCceeeccccCccCcccccccCHHHHHHHHHHhccccccCHHHHHHHHHhh
Confidence 46677888899887776653 234567899999999887654210 0 0000 0000000 000
Q ss_pred --------------------------cCCCCCCCCcEEEEEeeccccccCHHHH----HHHHHHHhcc----CCCeEEEE
Q 043412 181 --------------------------LSNMNTSSKEFVFLSVFKWEYRKGWDVL----LKAYLEEFSK----ADGVVLYL 226 (383)
Q Consensus 181 --------------------------~~~~~~~~~~~~i~~~g~~~~~K~~~~l----l~a~~~l~~~----~~~~~l~i 226 (383)
..+..++++.+..+++-|+.++|...+. +..+.+++.. ..++++++
T Consensus 409 dd~~~~~~~~~vK~~~K~rl~~~i~~~~~~~ldp~slfdv~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IF 488 (713)
T PF00343_consen 409 DDEEFQEELREVKQENKERLAEYIKKRTGVELDPDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIF 488 (713)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEE
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEE
Confidence 0025577899999999999999997773 3455566543 23588999
Q ss_pred EeCCCCCCCchHHHHHHHHhh--------CCCCCc--c-----------ccccccCceEEecCC--CCCCChHHHHHHHc
Q 043412 227 LTNPYHSGRDFGNKIVNFVED--------SDLEKP--D-----------DGWAPAADVFVLPSR--GEGWGRPLVEAMSM 283 (383)
Q Consensus 227 ~G~~~~~~~~~~~~~~~~~~~--------~~~~~~--v-----------~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~ 283 (383)
.|...+.+.. .+.+.+++.. ..+.+. | ..++..+|+-+..|+ .|+.|.+-+-+|..
T Consensus 489 aGKAhP~d~~-gK~iIk~I~~va~~in~Dp~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~N 567 (713)
T PF00343_consen 489 AGKAHPGDYM-GKEIIKLINNVAEVINNDPEVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMN 567 (713)
T ss_dssp E----TT-HH-HHHHHHHHHHHHHHHCT-TTTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHT
T ss_pred eccCCCCcHH-HHHHHHHHHHHHHHHhcChhhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcC
Confidence 9886543322 2333333322 122221 1 356699999999886 69999999999999
Q ss_pred CCCEEEcCCCCcccccc---CCCceeeec
Q 043412 284 GLPVIATNWSGPTEYLT---EENGYPLLV 309 (383)
Q Consensus 284 G~PvI~~~~~g~~e~v~---~~~g~~~~~ 309 (383)
|.+.+++-.|...|+.+ ++|.+++..
T Consensus 568 GaL~lstlDG~niEi~e~vG~eN~fiFG~ 596 (713)
T PF00343_consen 568 GALNLSTLDGWNIEIAEAVGEENIFIFGL 596 (713)
T ss_dssp T-EEEEESSTCHHHHHHHH-GGGSEEES-
T ss_pred CCeEEecccchhHHHHHhcCCCcEEEcCC
Confidence 99999999999988875 357777753
No 160
>PLN02562 UDP-glycosyltransferase
Probab=95.47 E-value=0.31 Score=46.22 Aligned_cols=136 Identities=11% Similarity=0.057 Sum_probs=69.5
Q ss_pred CcEEEEEeeccc---cccCHHHHHHHHHHHhccCCCeEEEEE-eCCCCCCCchHHHHHHHHhhCCCC-C--ccccccccC
Q 043412 189 KEFVFLSVFKWE---YRKGWDVLLKAYLEEFSKADGVVLYLL-TNPYHSGRDFGNKIVNFVEDSDLE-K--PDDGWAPAA 261 (383)
Q Consensus 189 ~~~~i~~~g~~~---~~K~~~~ll~a~~~l~~~~~~~~l~i~-G~~~~~~~~~~~~~~~~~~~~~~~-~--~v~~~~~~a 261 (383)
...+++..|... +.+.+..+..++... + .+|+++ ..+. .....+.+.+.+...+.. + .-..+++..
T Consensus 273 ~svvyvsfGS~~~~~~~~~~~~l~~~l~~~----g-~~fiW~~~~~~--~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~ 345 (448)
T PLN02562 273 NSVIYISFGSWVSPIGESNVRTLALALEAS----G-RPFIWVLNPVW--REGLPPGYVERVSKQGKVVSWAPQLEVLKHQ 345 (448)
T ss_pred CceEEEEecccccCCCHHHHHHHHHHHHHC----C-CCEEEEEcCCc--hhhCCHHHHHHhccCEEEEecCCHHHHhCCC
Confidence 457888888753 334455555555443 2 255443 2210 001122222222222211 0 012344444
Q ss_pred ceEEecCCCCCCChHHHHHHHcCCCEEEcCCCC----ccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHH
Q 043412 262 DVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSG----PTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALM 337 (383)
Q Consensus 262 di~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g----~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i 337 (383)
++..+-+ .+.-.+++||+++|+|+|+.+..+ ....+.+.-| .|+-+...+.+++++++
T Consensus 346 ~v~~fvt--H~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g----------------~g~~~~~~~~~~l~~~v 407 (448)
T PLN02562 346 AVGCYLT--HCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWK----------------IGVRISGFGQKEVEEGL 407 (448)
T ss_pred ccceEEe--cCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhC----------------ceeEeCCCCHHHHHHHH
Confidence 4322222 344569999999999999987632 1122211111 22222233889999999
Q ss_pred HHHhcCHHHHHH
Q 043412 338 RLVVSNVDEAKA 349 (383)
Q Consensus 338 ~~ll~~~~~~~~ 349 (383)
++++.|++.+++
T Consensus 408 ~~~l~~~~~r~~ 419 (448)
T PLN02562 408 RKVMEDSGMGER 419 (448)
T ss_pred HHHhCCHHHHHH
Confidence 999988765544
No 161
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.40 E-value=0.073 Score=53.16 Aligned_cols=125 Identities=16% Similarity=0.062 Sum_probs=88.9
Q ss_pred CCCCCCcEEEEEeeccccccCHHH-H---HHHHHHHhccC----CCeEEEEEeCCCCCCCchHHHHHHHHhhC-------
Q 043412 184 MNTSSKEFVFLSVFKWEYRKGWDV-L---LKAYLEEFSKA----DGVVLYLLTNPYHSGRDFGNKIVNFVEDS------- 248 (383)
Q Consensus 184 ~~~~~~~~~i~~~g~~~~~K~~~~-l---l~a~~~l~~~~----~~~~l~i~G~~~~~~~~~~~~~~~~~~~~------- 248 (383)
..++++.+..+++-|+.++|...+ + ++.+.+++..- .+.++++.|...+.... .+.+.+++...
T Consensus 524 ~~ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~-aK~iIklI~~va~~in~D 602 (797)
T cd04300 524 VEVDPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYYM-AKLIIKLINAVADVVNND 602 (797)
T ss_pred CccCCCccEEEEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcHH-HHHHHHHHHHHHHHhccC
Confidence 456899999999999999999888 4 44556665431 34788888876543322 23333332222
Q ss_pred -CCCCc--c-----------ccccccCceEEecCC--CCCCChHHHHHHHcCCCEEEcCCCCccccccC---CCceeeec
Q 043412 249 -DLEKP--D-----------DGWAPAADVFVLPSR--GEGWGRPLVEAMSMGLPVIATNWSGPTEYLTE---ENGYPLLV 309 (383)
Q Consensus 249 -~~~~~--v-----------~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~---~~g~~~~~ 309 (383)
.+.+. + ..++.+||+-...|. .|..|.+=|-+|..|.+.++|-.|...|+.++ +|++++..
T Consensus 603 p~v~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~e~vG~eN~fiFG~ 682 (797)
T cd04300 603 PDVGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEENIFIFGL 682 (797)
T ss_pred hhcCCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHHHHhCcCcEEEeCC
Confidence 12221 1 356699999988876 69999999999999999999999988888874 58888864
No 162
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.34 E-value=0.26 Score=44.22 Aligned_cols=101 Identities=19% Similarity=0.167 Sum_probs=63.4
Q ss_pred CcEEEEEeecccccc--CHH---HHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhC-CC-------CCccc
Q 043412 189 KEFVFLSVFKWEYRK--GWD---VLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDS-DL-------EKPDD 255 (383)
Q Consensus 189 ~~~~i~~~g~~~~~K--~~~---~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~-~~-------~~~v~ 255 (383)
...+.+.+|.-+... +.+ .+++.+..+.+..+ ..+.|..+.. ...+....+.+..+.. ++ .+-+.
T Consensus 146 ~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~vttSRR-Tp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~ 223 (311)
T PF06258_consen 146 RPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYG-GSLLVTTSRR-TPPEAEAALRELLKDNPGVYIWDGTGENPYL 223 (311)
T ss_pred CCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCC-CeEEEEcCCC-CcHHHHHHHHHhhcCCCceEEecCCCCCcHH
Confidence 345555555433222 333 66777777776665 7888887652 2223445555555322 11 12356
Q ss_pred cccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCC
Q 043412 256 GWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSG 294 (383)
Q Consensus 256 ~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g 294 (383)
.+++.||.++.+...- .-+.||+++|+||.+-...+
T Consensus 224 ~~La~ad~i~VT~DSv---SMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 224 GFLAAADAIVVTEDSV---SMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred HHHHhCCEEEEcCccH---HHHHHHHHcCCCEEEecCCC
Confidence 7889999999886532 35789999999999998876
No 163
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=95.33 E-value=0.25 Score=47.12 Aligned_cols=60 Identities=23% Similarity=0.120 Sum_probs=38.5
Q ss_pred CCCChHHHHHHHcCCCEEEcCCCC----cccccc-C-CCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCH
Q 043412 271 EGWGRPLVEAMSMGLPVIATNWSG----PTEYLT-E-ENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNV 344 (383)
Q Consensus 271 e~~~~~~~Ea~a~G~PvI~~~~~g----~~e~v~-~-~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~ 344 (383)
.+.-++++||+.+|+|+|+.+..+ ....+. . +.|.-++.. ++ .-+.+++++++++++.++
T Consensus 363 H~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~----------~~----~~~~~~l~~av~~vm~~~ 428 (481)
T PLN02992 363 HCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDP----------KE----VISRSKIEALVRKVMVEE 428 (481)
T ss_pred cCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCC----------CC----cccHHHHHHHHHHHhcCC
Confidence 345579999999999999997632 222221 1 333333210 00 128899999999999764
No 164
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.32 E-value=0.017 Score=46.40 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=32.1
Q ss_pred cCCCCEEEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCC
Q 043412 122 CNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFF 161 (383)
Q Consensus 122 ~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~ 161 (383)
+..||..+++|.++++.+-..-. +||.||.-|||++.+
T Consensus 133 l~~~D~~isPT~wQ~~~fP~~~r--~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 133 LEQADAGISPTRWQRSQFPAEFR--SKISVIHDGIDTDRF 170 (171)
T ss_pred HHhCCcCcCCCHHHHHhCCHHHH--cCcEEeecccchhhc
Confidence 68899999999999998876322 499999999998765
No 165
>PLN02210 UDP-glucosyl transferase
Probab=95.32 E-value=0.62 Score=44.33 Aligned_cols=140 Identities=13% Similarity=0.112 Sum_probs=69.1
Q ss_pred CCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHh-hCCCCC---ccccccccCce
Q 043412 188 SKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVE-DSDLEK---PDDGWAPAADV 263 (383)
Q Consensus 188 ~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~-~~~~~~---~v~~~~~~adi 263 (383)
+...+++..|..... ..+.+-+.+..|... +.+|+++-.... .......+.+... ..|+.. .-..+++.+++
T Consensus 268 ~~svvyvsfGS~~~~-~~~~~~e~a~~l~~~--~~~flw~~~~~~-~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~v 343 (456)
T PLN02210 268 RSSVVYISFGSMLES-LENQVETIAKALKNR--GVPFLWVIRPKE-KAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAI 343 (456)
T ss_pred CCceEEEEecccccC-CHHHHHHHHHHHHhC--CCCEEEEEeCCc-cccchhhHHhhccCCCeEEEecCCHHHHhcCcCc
Confidence 356888888976432 233333333333322 345554332211 1111222333331 222210 01234455553
Q ss_pred EEecCCCCCCChHHHHHHHcCCCEEEcCCCC----ccccccC--CCceeeecccccccccCCCCcccccCCCHHHHHHHH
Q 043412 264 FVLPSRGEGWGRPLVEAMSMGLPVIATNWSG----PTEYLTE--ENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALM 337 (383)
Q Consensus 264 ~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g----~~e~v~~--~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i 337 (383)
..+-+ .+.-.+++||+++|+|+|+-+..+ ....+.+ +.|..+... ...| ..+.+++++++
T Consensus 344 g~Fit--H~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~--------~~~~----~~~~~~l~~av 409 (456)
T PLN02210 344 SCFVT--HCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRND--------AVDG----ELKVEEVERCI 409 (456)
T ss_pred CeEEe--eCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEecc--------ccCC----cCCHHHHHHHH
Confidence 22222 233458999999999999987732 1222222 455444311 0001 12889999999
Q ss_pred HHHhcCHH
Q 043412 338 RLVVSNVD 345 (383)
Q Consensus 338 ~~ll~~~~ 345 (383)
++++.+++
T Consensus 410 ~~~m~~~~ 417 (456)
T PLN02210 410 EAVTEGPA 417 (456)
T ss_pred HHHhcCch
Confidence 99998754
No 166
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=95.26 E-value=0.44 Score=45.25 Aligned_cols=136 Identities=10% Similarity=0.124 Sum_probs=67.4
Q ss_pred CCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCC-CCCc----hHHHHHHHHhhCCCCCc---cccccc
Q 043412 188 SKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYH-SGRD----FGNKIVNFVEDSDLEKP---DDGWAP 259 (383)
Q Consensus 188 ~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~-~~~~----~~~~~~~~~~~~~~~~~---v~~~~~ 259 (383)
++..+++..|.... -..+.+.+.+..|.... . .|+++-.... ...+ ..+.+.+.+...++.-. -..+++
T Consensus 263 ~~sVvyvsfGS~~~-~~~~q~~ela~gLe~s~-~-~FlWv~r~~~~~~~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~ 339 (451)
T PLN02410 263 KNSVIFVSLGSLAL-MEINEVMETASGLDSSN-Q-QFLWVIRPGSVRGSEWIESLPKEFSKIISGRGYIVKWAPQKEVLS 339 (451)
T ss_pred CCcEEEEEcccccc-CCHHHHHHHHHHHHhcC-C-CeEEEEccCcccccchhhcCChhHHHhccCCeEEEccCCHHHHhC
Confidence 45789999997642 22334444444443222 2 4444433110 0001 22333333433332110 012334
Q ss_pred cCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCc----cccccC--CCceeeecccccccccCCCCcccccCCCHHHH
Q 043412 260 AADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGP----TEYLTE--ENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKL 333 (383)
Q Consensus 260 ~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~----~e~v~~--~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 333 (383)
..++..+- ..+.-++++||+++|+|+|+.+..+- ...+.+ +.|+-+. ...+.+++
T Consensus 340 h~~v~~fv--tH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~-----------------~~~~~~~v 400 (451)
T PLN02410 340 HPAVGGFW--SHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVE-----------------GDLDRGAV 400 (451)
T ss_pred CCccCeee--ecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeC-----------------CcccHHHH
Confidence 43331111 23444699999999999999876321 111111 2332221 12389999
Q ss_pred HHHHHHHhcCHH
Q 043412 334 RALMRLVVSNVD 345 (383)
Q Consensus 334 a~~i~~ll~~~~ 345 (383)
++++++++.+++
T Consensus 401 ~~av~~lm~~~~ 412 (451)
T PLN02410 401 ERAVKRLMVEEE 412 (451)
T ss_pred HHHHHHHHcCCc
Confidence 999999998754
No 167
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=95.19 E-value=0.49 Score=44.88 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=38.2
Q ss_pred CCCChHHHHHHHcCCCEEEcCCCC----ccccccC--CCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCH
Q 043412 271 EGWGRPLVEAMSMGLPVIATNWSG----PTEYLTE--ENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNV 344 (383)
Q Consensus 271 e~~~~~~~Ea~a~G~PvI~~~~~g----~~e~v~~--~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~ 344 (383)
.+..++++||+.+|+|+|+-+..+ ....+.+ +.|+-+..+ .. ...+.++++++++++++++
T Consensus 352 H~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~---------~~----~~~~~e~l~~av~~vm~~~ 418 (455)
T PLN02152 352 HCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVREN---------SE----GLVERGEIRRCLEAVMEEK 418 (455)
T ss_pred eCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecC---------cC----CcCcHHHHHHHHHHHHhhh
Confidence 344579999999999999987632 1112222 233332210 00 0127899999999999754
Q ss_pred H
Q 043412 345 D 345 (383)
Q Consensus 345 ~ 345 (383)
.
T Consensus 419 ~ 419 (455)
T PLN02152 419 S 419 (455)
T ss_pred H
Confidence 3
No 168
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=94.90 E-value=0.13 Score=51.35 Aligned_cols=125 Identities=16% Similarity=0.058 Sum_probs=88.6
Q ss_pred CCCCCCcEEEEEeeccccccCHHH-HHH---HHHHHhcc----CCCeEEEEEeCCCCCCCchHHHHHHHHhhCC------
Q 043412 184 MNTSSKEFVFLSVFKWEYRKGWDV-LLK---AYLEEFSK----ADGVVLYLLTNPYHSGRDFGNKIVNFVEDSD------ 249 (383)
Q Consensus 184 ~~~~~~~~~i~~~g~~~~~K~~~~-ll~---a~~~l~~~----~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~------ 249 (383)
..++++.+..+++-|+.++|...+ ++. .+.+++.. ..+.++++.|...+.. ...+.+.+++....
T Consensus 521 ~~ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y-~~aK~iIklI~~va~~iN~D 599 (794)
T TIGR02093 521 VEVDPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGY-HMAKLIIKLINSVAEVVNND 599 (794)
T ss_pred CccCccccchhhheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCc-HHHHHHHHHHHHHHHHhccC
Confidence 346789999999999999998877 444 45555443 1256888888765432 22233433433322
Q ss_pred --CCCc--c-----------ccccccCceEEecCC--CCCCChHHHHHHHcCCCEEEcCCCCccccccC---CCceeeec
Q 043412 250 --LEKP--D-----------DGWAPAADVFVLPSR--GEGWGRPLVEAMSMGLPVIATNWSGPTEYLTE---ENGYPLLV 309 (383)
Q Consensus 250 --~~~~--v-----------~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~---~~g~~~~~ 309 (383)
+.+. | ..++.+||+-...|. .|..|.+=|-+|..|.+.++|-.|...|+.++ +|++++..
T Consensus 600 p~v~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~e~vG~eN~fiFG~ 679 (794)
T TIGR02093 600 PAVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIREEVGAENIFIFGL 679 (794)
T ss_pred hhhCCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHHHHhCcccEEEcCC
Confidence 2221 1 356689999988876 69999999999999999999999988888864 58888864
No 169
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=94.89 E-value=0.15 Score=44.79 Aligned_cols=85 Identities=14% Similarity=0.067 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCC-----CCccccccccCceEEecCCCCCCChHHH
Q 043412 204 GWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDL-----EKPDDGWAPAADVFVLPSRGEGWGRPLV 278 (383)
Q Consensus 204 ~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~adi~v~ps~~e~~~~~~~ 278 (383)
....+++.+..+.+..|+.+++|---...........+.+.....+. ..++..++..||.++.-+ +.+-+
T Consensus 138 ~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~s~~Vvtin-----StvGl 212 (269)
T PF05159_consen 138 SQADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNLPNVVIIDDDVNLYELLEQSDAVVTIN-----STVGL 212 (269)
T ss_pred cHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcCCCeEEECCCCCHHHHHHhCCEEEEEC-----CHHHH
Confidence 45667777777777888999888654311111111222222121111 134578889999888554 46889
Q ss_pred HHHHcCCCEEEcCCC
Q 043412 279 EAMSMGLPVIATNWS 293 (383)
Q Consensus 279 Ea~a~G~PvI~~~~~ 293 (383)
||+.+|+||++...+
T Consensus 213 EAll~gkpVi~~G~~ 227 (269)
T PF05159_consen 213 EALLHGKPVIVFGRA 227 (269)
T ss_pred HHHHcCCceEEecCc
Confidence 999999999998764
No 170
>PLN02207 UDP-glycosyltransferase
Probab=94.85 E-value=0.79 Score=43.66 Aligned_cols=138 Identities=10% Similarity=0.097 Sum_probs=66.6
Q ss_pred CCcEEEEEeeccc--cccCHHHHHHHHHHHhccCCCeEEEEEeCCCCC--CCchHHHHHHHHhhCCCCCccccccccCce
Q 043412 188 SKEFVFLSVFKWE--YRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHS--GRDFGNKIVNFVEDSDLEKPDDGWAPAADV 263 (383)
Q Consensus 188 ~~~~~i~~~g~~~--~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~adi 263 (383)
+...++++.|... +.+.+..+..++... ..+|+++-..+.. .....+.+.+.+...++ +..+..+-++
T Consensus 274 ~~sVVyvSfGS~~~~~~~q~~ela~~l~~~-----~~~flW~~r~~~~~~~~~lp~~f~er~~~~g~---i~~W~PQ~~I 345 (468)
T PLN02207 274 EASVVFLCFGSMGRLRGPLVKEIAHGLELC-----QYRFLWSLRTEEVTNDDLLPEGFLDRVSGRGM---ICGWSPQVEI 345 (468)
T ss_pred CCcEEEEEeccCcCCCHHHHHHHHHHHHHC-----CCcEEEEEeCCCccccccCCHHHHhhcCCCeE---EEEeCCHHHH
Confidence 3578888888764 233455555555443 2355554332110 01111222222222222 2333333333
Q ss_pred EEecCC----CCCCChHHHHHHHcCCCEEEcCCCC----ccccccC--CCceeeecccccccccCCCCcccccCCCHHHH
Q 043412 264 FVLPSR----GEGWGRPLVEAMSMGLPVIATNWSG----PTEYLTE--ENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKL 333 (383)
Q Consensus 264 ~v~ps~----~e~~~~~~~Ea~a~G~PvI~~~~~g----~~e~v~~--~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 333 (383)
+-.|+. ..+.-++++||+++|+|+|+-+..+ ...++.+ +.|.-+..+. .. ... ..-+.+++
T Consensus 346 L~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~---~~--~~~----~~v~~e~i 416 (468)
T PLN02207 346 LAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDY---RV--HSD----EIVNANEI 416 (468)
T ss_pred hcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEeccc---cc--ccC----CcccHHHH
Confidence 333322 2334468999999999999987632 1221111 2333221100 00 000 01278999
Q ss_pred HHHHHHHhc
Q 043412 334 RALMRLVVS 342 (383)
Q Consensus 334 a~~i~~ll~ 342 (383)
.++|++++.
T Consensus 417 ~~av~~vm~ 425 (468)
T PLN02207 417 ETAIRCVMN 425 (468)
T ss_pred HHHHHHHHh
Confidence 999999996
No 171
>PLN02167 UDP-glycosyltransferase family protein
Probab=94.71 E-value=0.98 Score=43.33 Aligned_cols=81 Identities=14% Similarity=0.126 Sum_probs=44.1
Q ss_pred CCChHHHHHHHcCCCEEEcCCCCc----ccc-ccC-CCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCH-
Q 043412 272 GWGRPLVEAMSMGLPVIATNWSGP----TEY-LTE-ENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNV- 344 (383)
Q Consensus 272 ~~~~~~~Ea~a~G~PvI~~~~~g~----~e~-v~~-~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~- 344 (383)
+.-++++||+++|+|+|+-+..+- ... +.. +.|..+.... .+ ..+ ...+.+++++++++++.++
T Consensus 366 ~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~-----~~-~~~---~~~~~~~l~~av~~~m~~~~ 436 (475)
T PLN02167 366 CGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDY-----VS-AYG---EIVKADEIAGAVRSLMDGED 436 (475)
T ss_pred CCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeeccc-----cc-ccC---CcccHHHHHHHHHHHhcCCH
Confidence 334589999999999999876321 111 222 3444332110 00 000 0127899999999999754
Q ss_pred HHH---HHHHHHHHHHHHhc
Q 043412 345 DEA---KAKGKQAREDMIQR 361 (383)
Q Consensus 345 ~~~---~~~~~~a~~~~~~~ 361 (383)
+.+ +++++.+++-+.+.
T Consensus 437 ~~r~~a~~~~~~~~~av~~g 456 (475)
T PLN02167 437 VPRKKVKEIAEAARKAVMDG 456 (475)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 222 33444444444433
No 172
>PLN02173 UDP-glucosyl transferase family protein
Probab=94.22 E-value=1.3 Score=42.02 Aligned_cols=85 Identities=13% Similarity=0.175 Sum_probs=48.5
Q ss_pred cccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCC----ccccccC--CCceeeecccccccccCCCCcccccCCC
Q 043412 256 GWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSG----PTEYLTE--ENGYPLLVGRMSEVTEGPFKGHFWAEPS 329 (383)
Q Consensus 256 ~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g----~~e~v~~--~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 329 (383)
.+++..++..+-+ .+..++++||+++|+|+|+-+.-+ ....+.+ +.|.-+..+ ..+| . -+
T Consensus 329 ~iL~H~~v~~Fvt--HcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~--------~~~~-~---~~ 394 (449)
T PLN02173 329 QVLSNKAIGCFMT--HCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAE--------KESG-I---AK 394 (449)
T ss_pred HHhCCCccceEEe--cCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeec--------ccCC-c---cc
Confidence 3444544333222 345679999999999999987632 2222222 344433311 0001 1 17
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Q 043412 330 VDKLRALMRLVVSNVDEAKAKGKQAR 355 (383)
Q Consensus 330 ~~~la~~i~~ll~~~~~~~~~~~~a~ 355 (383)
.+++++++++++.+++ .++|.++++
T Consensus 395 ~e~v~~av~~vm~~~~-~~~~r~~a~ 419 (449)
T PLN02173 395 REEIEFSIKEVMEGEK-SKEMKENAG 419 (449)
T ss_pred HHHHHHHHHHHhcCCh-HHHHHHHHH
Confidence 8999999999998643 234444433
No 173
>PLN02555 limonoid glucosyltransferase
Probab=93.99 E-value=1.5 Score=41.90 Aligned_cols=74 Identities=19% Similarity=0.156 Sum_probs=42.2
Q ss_pred CCCChHHHHHHHcCCCEEEcCCCC----cccccc-C-CCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCH
Q 043412 271 EGWGRPLVEAMSMGLPVIATNWSG----PTEYLT-E-ENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNV 344 (383)
Q Consensus 271 e~~~~~~~Ea~a~G~PvI~~~~~g----~~e~v~-~-~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~ 344 (383)
.+.-.+++||+.+|+|+|+.+.-+ ....+. . +.|+-+... +...+ .-+.+++.+++++++.++
T Consensus 362 H~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~-------~~~~~----~v~~~~v~~~v~~vm~~~ 430 (480)
T PLN02555 362 HCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRG-------EAENK----LITREEVAECLLEATVGE 430 (480)
T ss_pred cCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCC-------ccccC----cCcHHHHHHHHHHHhcCc
Confidence 444579999999999999988732 111111 2 333333100 00000 127899999999999764
Q ss_pred HHHHHHHHHHHH
Q 043412 345 DEAKAKGKQARE 356 (383)
Q Consensus 345 ~~~~~~~~~a~~ 356 (383)
+ -++|.++|++
T Consensus 431 ~-g~~~r~ra~~ 441 (480)
T PLN02555 431 K-AAELKQNALK 441 (480)
T ss_pred h-HHHHHHHHHH
Confidence 3 2344444433
No 174
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=93.84 E-value=1.4 Score=40.21 Aligned_cols=93 Identities=16% Similarity=0.190 Sum_probs=61.5
Q ss_pred cEEEEEee-ccccccCH--HHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCC----CC-----Cccccc
Q 043412 190 EFVFLSVF-KWEYRKGW--DVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSD----LE-----KPDDGW 257 (383)
Q Consensus 190 ~~~i~~~g-~~~~~K~~--~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~----~~-----~~v~~~ 257 (383)
..+++..| .-...|.+ +.+.+.+..+.++. .+++++|+. +..+..+++....+ +. +++..+
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~--~~Vvl~g~~-----~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~l 248 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKG--YQVVLFGGP-----DEEERAEEIAKGLPNAVILAGKTSLEELAAL 248 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCC--CEEEEecCh-----HHHHHHHHHHHhcCCccccCCCCCHHHHHHH
Confidence 56677777 54456654 46777777776665 788898876 23344444443333 22 456688
Q ss_pred cccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCC
Q 043412 258 APAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSG 294 (383)
Q Consensus 258 ~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g 294 (383)
+..||++|.+.. -.+-=|.|.|+|+|+--...
T Consensus 249 i~~a~l~I~~DS-----g~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 249 IAGADLVIGNDS-----GPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred HhcCCEEEccCC-----hHHHHHHHcCCCEEEEECCC
Confidence 899999997763 24556889999999986543
No 175
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=93.79 E-value=0.46 Score=41.05 Aligned_cols=135 Identities=15% Similarity=0.080 Sum_probs=78.4
Q ss_pred cEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCC-C-----CCccccccccCce
Q 043412 190 EFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSD-L-----EKPDDGWAPAADV 263 (383)
Q Consensus 190 ~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~-~-----~~~v~~~~~~adi 263 (383)
+-+++..|.-+ .|+ +..+.+..+.+.. +.+.++-+. ..+....+.+.++... + .+++..++..||+
T Consensus 159 r~ilI~lGGsD-pk~--lt~kvl~~L~~~~--~nl~iV~gs---~~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~ 230 (318)
T COG3980 159 RDILITLGGSD-PKN--LTLKVLAELEQKN--VNLHIVVGS---SNPTLKNLRKRAEKYPNINLYIDTNDMAELMKEADL 230 (318)
T ss_pred heEEEEccCCC-hhh--hHHHHHHHhhccC--eeEEEEecC---CCcchhHHHHHHhhCCCeeeEecchhHHHHHHhcch
Confidence 33455555433 344 4566776665543 555444332 1244566666666543 2 2678899999999
Q ss_pred EEecCCCCCCChHHHHHHHcCCCEEE----cCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHH
Q 043412 264 FVLPSRGEGWGRPLVEAMSMGLPVIA----TNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRL 339 (383)
Q Consensus 264 ~v~ps~~e~~~~~~~Ea~a~G~PvI~----~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ 339 (383)
.+.. -|.++.||+..|+|.++ .+.......++. -|+..+ .|.. -........+.+
T Consensus 231 aI~A-----aGstlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg~~~~------------l~~~---l~~~~~~~~~~~ 289 (318)
T COG3980 231 AISA-----AGSTLYEALLLGVPSLVLPLAENQIATAKEFEA-LGIIKQ------------LGYH---LKDLAKDYEILQ 289 (318)
T ss_pred heec-----cchHHHHHHHhcCCceEEeeeccHHHHHHHHHh-cCchhh------------ccCC---CchHHHHHHHHH
Confidence 8844 37899999999999332 222222222221 122111 1111 156777888888
Q ss_pred HhcCHHHHHHHHHH
Q 043412 340 VVSNVDEAKAKGKQ 353 (383)
Q Consensus 340 ll~~~~~~~~~~~~ 353 (383)
+.+|+..++.+...
T Consensus 290 i~~d~~~rk~l~~~ 303 (318)
T COG3980 290 IQKDYARRKNLSFG 303 (318)
T ss_pred hhhCHHHhhhhhhc
Confidence 88899887766544
No 176
>PLN02534 UDP-glycosyltransferase
Probab=93.05 E-value=5.7 Score=38.20 Aligned_cols=81 Identities=11% Similarity=0.051 Sum_probs=42.8
Q ss_pred cccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCc----cccccC--CCceeeecccccccccCC-CCcccccCC
Q 043412 256 GWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGP----TEYLTE--ENGYPLLVGRMSEVTEGP-FKGHFWAEP 328 (383)
Q Consensus 256 ~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~----~e~v~~--~~g~~~~~~~~~~~~~~~-~~g~~~~~~ 328 (383)
.++...++..+- ..+..++++||+++|+|+|+-+..+- ...+.+ +.|+-+... .+.-..+. ..|.++
T Consensus 356 ~iL~h~~v~~fv--tH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~-~~~~~~~~~~~~~~v--- 429 (491)
T PLN02534 356 LILSHPAIGGFL--THCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVE-VPVRWGDEERVGVLV--- 429 (491)
T ss_pred HHhcCCccceEE--ecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEeccc-ccccccccccccCcc---
Confidence 445555552222 33456799999999999999877321 111212 233222110 00000000 001122
Q ss_pred CHHHHHHHHHHHhc
Q 043412 329 SVDKLRALMRLVVS 342 (383)
Q Consensus 329 ~~~~la~~i~~ll~ 342 (383)
+.+++++++++++.
T Consensus 430 ~~eev~~~v~~~m~ 443 (491)
T PLN02534 430 KKDEVEKAVKTLMD 443 (491)
T ss_pred CHHHHHHHHHHHhc
Confidence 78999999999996
No 177
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=92.90 E-value=0.41 Score=33.11 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=40.4
Q ss_pred HhcCCCCEEEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCC
Q 043412 120 KRCNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCD 167 (383)
Q Consensus 120 ~~~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~ 167 (383)
.....+|.|++.-....+.+++.|.. ++..+|-++|+..+.+....
T Consensus 14 ~i~~~~~~iFt~D~~~~~~~~~~G~~--~V~yLPLAa~~~~~~p~~~~ 59 (79)
T PF12996_consen 14 SIANSYDYIFTFDRSFVEEYRNLGAE--NVFYLPLAANPERFRPIPVD 59 (79)
T ss_pred hhCCCCCEEEEECHHHHHHHHHcCCC--CEEEccccCCHHHhCcccCC
Confidence 34578999999999999999999875 99999999999999887653
No 178
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=92.50 E-value=2.7 Score=37.49 Aligned_cols=149 Identities=13% Similarity=0.081 Sum_probs=79.3
Q ss_pred HHHhcCCCCEEEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEee
Q 043412 118 HVKRCNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVF 197 (383)
Q Consensus 118 ~~~~~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g 197 (383)
..+.++++|.+.+=-+...+.+++.|+ ++.+.+. +...-+......... .+.+.+.+.+.
T Consensus 121 ~~~~l~~~~~i~vRD~~S~~~l~~~g~---~i~~~~D---~a~~l~~~~~~~~~~--------------~~~~~i~i~~r 180 (298)
T TIGR03609 121 VRRVLRGCRAISVRDAASYRLLKRLGI---PAELAAD---PVWLLPPEPWPGGEP--------------LPEPVIVVSLR 180 (298)
T ss_pred HHHHHccCCEEEEeCHHHHHHHHHhCC---CceEeCC---hhhhCCCCccccccc--------------CCCCeEEEEEC
Confidence 344589999999988888888888886 4565554 322221111000000 11233333332
Q ss_pred ccc--cccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCC----C--CCccccccccCceEEecCC
Q 043412 198 KWE--YRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSD----L--EKPDDGWAPAADVFVLPSR 269 (383)
Q Consensus 198 ~~~--~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~----~--~~~v~~~~~~adi~v~ps~ 269 (383)
.+. .....+.+.+++..+.++. +.+++++......+....+.+.+...... . .+++..+++.||++|....
T Consensus 181 ~~~~~~~~~~~~l~~~l~~l~~~~-g~~v~~i~~~~~~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~Rl 259 (298)
T TIGR03609 181 PWPLLDVSRLLRLLRALDRLQRDT-GAFVLFLPFQQPQDLPLARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMRL 259 (298)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhh-CCeEEEEeCCcchhHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEEech
Confidence 221 1223556777777776553 44555544322222222233333321100 0 1344567899998885554
Q ss_pred CCCCChHHHHHHHcCCCEEEcCC
Q 043412 270 GEGWGRPLVEAMSMGLPVIATNW 292 (383)
Q Consensus 270 ~e~~~~~~~Ea~a~G~PvI~~~~ 292 (383)
..++=|+.+|+|+|+-..
T Consensus 260 -----H~~I~A~~~gvP~i~i~y 277 (298)
T TIGR03609 260 -----HALILAAAAGVPFVALSY 277 (298)
T ss_pred -----HHHHHHHHcCCCEEEeec
Confidence 368899999999997754
No 179
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=92.44 E-value=6.7 Score=34.00 Aligned_cols=154 Identities=14% Similarity=0.138 Sum_probs=82.6
Q ss_pred HHHHHhcCCCCEEEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEE
Q 043412 116 PEHVKRCNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLS 195 (383)
Q Consensus 116 ~~~~~~~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ 195 (383)
..+.+.+++++.+.+=.+...+.+.+.|++. ++.++|..+ + ...+..... ... . . ......+..
T Consensus 119 ~~~~~~l~~~~~i~vRD~~S~~~l~~~g~~~-~~~~~~D~a-f-~l~~~~~~~-~~~---~--~-------~~~~~~~~~ 182 (286)
T PF04230_consen 119 KLLRRILSKADYISVRDEYSYELLKKLGISG-NVKLVPDPA-F-LLPPSYPDE-DKS---K--P-------KRNYISVSN 182 (286)
T ss_pred HHHHHHHhCCCEEEECCHHHHHHHHHcCCCC-CcEEEeCch-h-hcCcccccc-ccc---c--c-------ccceeeecc
Confidence 3455568889998888888888788888876 778887654 1 111111111 000 0 0 001111111
Q ss_pred eeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHh-h-C----------CCCCccccccccCce
Q 043412 196 VFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVE-D-S----------DLEKPDDGWAPAADV 263 (383)
Q Consensus 196 ~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~-~-~----------~~~~~v~~~~~~adi 263 (383)
........-.+.+.+.+..+......+.++....... ............ . . .-.+++..+++.|++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (286)
T PF04230_consen 183 SPSRNNEEYIEEIAELIQRLLDKGYKIVLLPFSPSDD--DEDDDDFNEIDIKAEKFFNVIIIDYSLSPDELLELISQADL 260 (286)
T ss_pred ccchhhhhHHHHHHHHHHHhhcccceeEEEEeeeccc--hhhHHHHHhhhhhcccccceeEecCCCCHHHHHHHHhcCCE
Confidence 1122223345566677777766444445544443311 111111111110 0 0 011455688899999
Q ss_pred EEecCCCCCCChHHHHHHHcCCCEEEcCC
Q 043412 264 FVLPSRGEGWGRPLVEAMSMGLPVIATNW 292 (383)
Q Consensus 264 ~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~ 292 (383)
+|.... -..+=|+++|+|+|+-+.
T Consensus 261 ~Is~Rl-----H~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 261 VISMRL-----HGAILALSLGVPVIAISY 284 (286)
T ss_pred EEecCC-----HHHHHHHHcCCCEEEEec
Confidence 997665 367889999999998764
No 180
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=92.42 E-value=2.3 Score=38.33 Aligned_cols=130 Identities=13% Similarity=0.041 Sum_probs=73.2
Q ss_pred CCcEEEEEeeccccccCH--HHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCC---CC-----Cccccc
Q 043412 188 SKEFVFLSVFKWEYRKGW--DVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSD---LE-----KPDDGW 257 (383)
Q Consensus 188 ~~~~~i~~~g~~~~~K~~--~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~---~~-----~~v~~~ 257 (383)
++..+++..|.-.+.|.+ +...+.+..+.++ +.++++.|+++ ...+..++.....+ +. .++..+
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~--~~~~vl~~g~~----~e~~~~~~i~~~~~~~~l~g~~sL~el~al 251 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLAR--GLQIVLPWGND----AEKQRAERIAEALPGAVVLPKMSLAEVAAL 251 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHC--CCeEEEeCCCH----HHHHHHHHHHhhCCCCeecCCCCHHHHHHH
Confidence 345666777754566655 5677777777543 57778775441 22222333332221 11 234577
Q ss_pred cccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccC-C-CceeeecccccccccCCCCcccccCCCHHHHHH
Q 043412 258 APAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTE-E-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRA 335 (383)
Q Consensus 258 ~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~-~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~ 335 (383)
++.||++|.... ..+-=|.+.|+|+|+--.+..+..... + +...+... -...-++++..+
T Consensus 252 i~~a~l~I~~DS-----gp~HlAaa~g~P~i~lfg~t~p~~~~P~~~~~~~~~~~-------------~~~~I~~~~V~~ 313 (319)
T TIGR02193 252 LAGADAVVGVDT-----GLTHLAAALDKPTVTLYGATDPGRTGGYGKPNVALLGE-------------SGANPTPDEVLA 313 (319)
T ss_pred HHcCCEEEeCCC-----hHHHHHHHcCCCEEEEECCCCHhhcccCCCCceEEccC-------------ccCCCCHHHHHH
Confidence 899999997753 245567789999998754433333222 2 11111111 133337888888
Q ss_pred HHHHHh
Q 043412 336 LMRLVV 341 (383)
Q Consensus 336 ~i~~ll 341 (383)
++++++
T Consensus 314 ai~~~~ 319 (319)
T TIGR02193 314 ALEELL 319 (319)
T ss_pred HHHhhC
Confidence 887653
No 181
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=92.02 E-value=3.1 Score=38.63 Aligned_cols=224 Identities=13% Similarity=0.166 Sum_probs=118.4
Q ss_pred cCCCCEEEEeChHHHHHHHh-cCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccc
Q 043412 122 CNRMDFVWVPTDFHVSTFIR-SGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWE 200 (383)
Q Consensus 122 ~~~ad~vi~~s~~~~~~~~~-~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~ 200 (383)
..+.|.+.+.+......+.+ +++..+++..++.+-+-..+........... .+ ..++.+.+..+|++.-.+.
T Consensus 146 ~~~~dy~~~~~~~~~~if~~~f~~~~~~i~~~G~Pr~D~~~~~~~~~~~~~~--~~-----~~~~~~~~k~vIlyaPTfr 218 (388)
T COG1887 146 RNHWDYLISPNPESTAIFAEAFNIDKENILETGYPRNDKLFDEAGKTEDILL--IQ-----LALPLPQDKKVILYAPTFR 218 (388)
T ss_pred eeeeeeeeeCChhhHHHHHHHhcccccceeecCcccchhhhhhccchhhhHH--Hh-----hhcCCcccCceEEecCCcc
Confidence 46788888888888887666 8888777777666554333333222211110 01 1233567789999988776
Q ss_pred ccc---C---HHH--HHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhh----CCC--CCccccccccCceEEe
Q 043412 201 YRK---G---WDV--LLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVED----SDL--EKPDDGWAPAADVFVL 266 (383)
Q Consensus 201 ~~K---~---~~~--ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~----~~~--~~~v~~~~~~adi~v~ 266 (383)
... + ... -++.+.+...+ .+..+++.-.. .....+...-.. ..+ ..++..++..+|++|.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~ii~k~Hp-----~is~~~~~~~~~~~~~~~vs~~~di~dll~~sDiLIT 292 (388)
T COG1887 219 DNDVLIGTQFFNLDIDIEKLKEKLGE-NEYVIIVKPHP-----LISDKIDKRYALDDFVLDVSDNADINDLLLVSDILIT 292 (388)
T ss_pred CCccccchhhhhhhhhHHHHHHhhcc-CCeEEEEecCh-----hhhhhhhhhhhccceeEecccchhHHHHHhhhCEEEe
Confidence 553 1 222 33333333221 45666655322 111111111011 112 2467889999999983
Q ss_pred cCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHH
Q 043412 267 PSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDE 346 (383)
Q Consensus 267 ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~ 346 (383)
-++-+..|+|..-+|||.--... .+ ..+..|+..+... ..-|.++. +.+++.++|.....+++.
T Consensus 293 -----DySSv~fdf~~l~KPiify~~D~-~~-y~~~rg~~~d~~~-------~~Pg~~~~--~~~~li~ai~~~~~~~~~ 356 (388)
T COG1887 293 -----DYSSVIFDFMLLDKPIIFYTYDL-EQ-YDELRGFYLDYKF-------EAPGEVVE--TQEELIDAIKPYDEDGNY 356 (388)
T ss_pred -----echHHHHHHHHhcCcEEEEecCh-HH-HHhhhhhhhhHHh-------cCCccccc--cHHHHHHHHHhhhcccch
Confidence 24678999999999999874321 11 1222343333110 00111111 789999999998885543
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043412 347 AKAKGKQAREDMIQRFSPETVAGIVTDHI 375 (383)
Q Consensus 347 ~~~~~~~a~~~~~~~~s~~~~~~~~~~~~ 375 (383)
+.+-.+...+. ...+.-.+..+++.+.+
T Consensus 357 ~~~k~~~~~~~-~~~~~dg~ss~ri~~~i 384 (388)
T COG1887 357 DLEKLRVFNDK-FNSYEDGRSSERILKLI 384 (388)
T ss_pred hHHHHHHHHHh-hcccccccHHHHHHHHH
Confidence 33222222222 23334455555555544
No 182
>PLN03015 UDP-glucosyl transferase
Probab=91.30 E-value=4.6 Score=38.52 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=35.5
Q ss_pred CCChHHHHHHHcCCCEEEcCCCC----ccccccC--CCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhc
Q 043412 272 GWGRPLVEAMSMGLPVIATNWSG----PTEYLTE--ENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVS 342 (383)
Q Consensus 272 ~~~~~~~Ea~a~G~PvI~~~~~g----~~e~v~~--~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~ 342 (383)
+.-++++||+++|+|+|+-+..+ ....+.+ +.|.-+... ...+ .-+.+++++++++++.
T Consensus 361 ~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~--------~~~~----~v~~e~i~~~v~~lm~ 425 (470)
T PLN03015 361 CGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSEL--------PSEK----VIGREEVASLVRKIVA 425 (470)
T ss_pred CCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEeccc--------ccCC----ccCHHHHHHHHHHHHc
Confidence 34468999999999999987621 1122212 233222100 0001 1288999999999995
No 183
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=90.95 E-value=8.2 Score=32.02 Aligned_cols=124 Identities=15% Similarity=0.148 Sum_probs=76.6
Q ss_pred CcEEEEEeeccc-cccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCCCccccccccCceEEec
Q 043412 189 KEFVFLSVFKWE-YRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLEKPDDGWAPAADVFVLP 267 (383)
Q Consensus 189 ~~~~i~~~g~~~-~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~adi~v~p 267 (383)
...+++|+|+.. ..+. .|++.++++++..-.+.++..|.. ....+.+..++..++.. -..++++..|
T Consensus 107 ~~riVvFvGSpi~e~ek--eLv~~akrlkk~~Vaidii~FGE~----~~~~e~l~~fida~N~~------~~gshlv~Vp 174 (259)
T KOG2884|consen 107 KQRIVVFVGSPIEESEK--ELVKLAKRLKKNKVAIDIINFGEA----ENNTEKLFEFIDALNGK------GDGSHLVSVP 174 (259)
T ss_pred ceEEEEEecCcchhhHH--HHHHHHHHHHhcCeeEEEEEeccc----cccHHHHHHHHHHhcCC------CCCceEEEeC
Confidence 356788888653 2222 788888899888777888888854 23356777777777663 2478888887
Q ss_pred CCCCCCChHHHHHHHcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHH
Q 043412 268 SRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVD 345 (383)
Q Consensus 268 s~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~ 345 (383)
.- + +++-...-.|++..+.|+..--.. .+|..++.+ +++.+.-+||-+++--++...
T Consensus 175 pg----~--~L~d~l~ssPii~ge~g~a~~~~~-a~g~~f~fg--------------vdp~~DPELAlALRlSMEEer 231 (259)
T KOG2884|consen 175 PG----P--LLSDALLSSPIIQGEDGGAAAGLG-ANGMDFEFG--------------VDPEDDPELALALRLSMEEER 231 (259)
T ss_pred CC----c--cHHHHhhcCceeccCccccccccc-ccccccccC--------------CCcccCHHHHHHHHhhHHHHH
Confidence 63 2 555566678999987643322221 122222211 223355678988887665433
No 184
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=90.54 E-value=1.3 Score=39.04 Aligned_cols=97 Identities=16% Similarity=0.109 Sum_probs=59.9
Q ss_pred cEEEEEeeccccccC--HHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhC------CCC-----Ccccc
Q 043412 190 EFVFLSVFKWEYRKG--WDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDS------DLE-----KPDDG 256 (383)
Q Consensus 190 ~~~i~~~g~~~~~K~--~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~------~~~-----~~v~~ 256 (383)
..+.+..|.-.+.|. .+...++++.+.++ ++++++.|+. +..+..+++.+.. .+. .++..
T Consensus 122 ~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~--~~~ivl~g~~-----~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~ 194 (279)
T cd03789 122 PVVVLPPGASGPAKRWPAERFAALADRLLAR--GARVVLTGGP-----AERELAEEIAAALGGPRVVNLAGKTSLRELAA 194 (279)
T ss_pred CEEEECCCCCCccccCCHHHHHHHHHHHHHC--CCEEEEEech-----hhHHHHHHHHHhcCCCccccCcCCCCHHHHHH
Confidence 455566665445454 46778888777665 7889998865 2233333333221 111 34567
Q ss_pred ccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCcccc
Q 043412 257 WAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEY 298 (383)
Q Consensus 257 ~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~ 298 (383)
+++.||+++.+.. | .+-=|.+.|+|+|+--.+..++.
T Consensus 195 li~~~~l~I~~Ds----g-~~HlA~a~~~p~i~l~g~~~~~~ 231 (279)
T cd03789 195 LLARADLVVTNDS----G-PMHLAAALGTPTVALFGPTDPAR 231 (279)
T ss_pred HHHhCCEEEeeCC----H-HHHHHHHcCCCEEEEECCCCccc
Confidence 8899999997752 2 34455799999988765444443
No 185
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=89.79 E-value=1.5 Score=37.77 Aligned_cols=101 Identities=14% Similarity=0.094 Sum_probs=55.4
Q ss_pred CCcEEEEEeeccccccCHHH--HHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCC--C---C-----Cccc
Q 043412 188 SKEFVFLSVFKWEYRKGWDV--LLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSD--L---E-----KPDD 255 (383)
Q Consensus 188 ~~~~~i~~~g~~~~~K~~~~--ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~--~---~-----~~v~ 255 (383)
++..+++..|.-.+.|.+.. ..+.+..+.++. .+++++|+..+ ...+.......... . . .++.
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~--~~vvl~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ 178 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERG--YRVVLLGGPEE---QEKEIADQIAAGLQNPVINLAGKTSLRELA 178 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT---EEEE--SSHH---HHHHHHHHHHTTHTTTTEEETTTS-HHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC--ceEEEEccchH---HHHHHHHHHHHhcccceEeecCCCCHHHHH
Confidence 45677777777667776544 777777776554 78888887611 01233333333322 1 1 3456
Q ss_pred cccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCcccc
Q 043412 256 GWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEY 298 (383)
Q Consensus 256 ~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~ 298 (383)
.+++.||++|.+.. -.+-=|.|.|+|+|+--....+..
T Consensus 179 ali~~a~~~I~~Dt-----g~~HlA~a~~~p~v~lfg~t~~~~ 216 (247)
T PF01075_consen 179 ALISRADLVIGNDT-----GPMHLAAALGTPTVALFGPTNPER 216 (247)
T ss_dssp HHHHTSSEEEEESS-----HHHHHHHHTT--EEEEESSS-HHH
T ss_pred HHHhcCCEEEecCC-----hHHHHHHHHhCCEEEEecCCCHHH
Confidence 78899999997763 356668899999998854433333
No 186
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=89.60 E-value=0.73 Score=37.27 Aligned_cols=74 Identities=11% Similarity=-0.052 Sum_probs=38.1
Q ss_pred HHHHhhhcCCCccEEEecCCCCCCCCcccccCC------CCCCCCCCCcccccceeeeecCCCCHHHHHhcCCCCEEEEe
Q 043412 58 VELYNTECRTNETVVICHSEPGAWYPPLFDTLP------CPPTPGYGDFMAVIGRTMFETDRVSPEHVKRCNRMDFVWVP 131 (383)
Q Consensus 58 ~~l~~~~~~~~pDiV~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~ 131 (383)
.....++.+.+||+|+++.+.......++..+. ...+ .+.....-. ......-+..+..+|.+++-
T Consensus 82 ~~~~~il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~ki------IyIES~aRv--~~lSlTGklly~~aD~f~VQ 153 (170)
T PF08660_consen 82 LQSLRILRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKI------IYIESFARV--KTLSLTGKLLYPFADRFIVQ 153 (170)
T ss_pred HHHHHHHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcE------EEEEeeeec--CCCchHHHHHHHhCCEEEEc
Confidence 344456677899999998765533333322222 1111 111111111 11122222224569999999
Q ss_pred ChHHHHHH
Q 043412 132 TDFHVSTF 139 (383)
Q Consensus 132 s~~~~~~~ 139 (383)
-+..++.+
T Consensus 154 W~~l~~~y 161 (170)
T PF08660_consen 154 WEELAEKY 161 (170)
T ss_pred CHHHHhHC
Confidence 88877765
No 187
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=89.13 E-value=7.3 Score=35.16 Aligned_cols=96 Identities=9% Similarity=-0.046 Sum_probs=54.6
Q ss_pred cEEEEEeeccccccCH--HHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCC---CC-----Cccccccc
Q 043412 190 EFVFLSVFKWEYRKGW--DVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSD---LE-----KPDDGWAP 259 (383)
Q Consensus 190 ~~~i~~~g~~~~~K~~--~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~---~~-----~~v~~~~~ 259 (383)
+++++..|.-.+.|.+ +...+.+..+.++ +.++++.++++ ...+..++..+... +. .++..+++
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~--~~~ivl~~G~~----~e~~~~~~i~~~~~~~~l~g~~sL~elaali~ 252 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPS--GLRIKLPWGAE----HEEQRAKRLAEGFPYVEVLPKLSLEQVARVLA 252 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHC--CCeEEEeCCCH----HHHHHHHHHHccCCcceecCCCCHHHHHHHHH
Confidence 4444444443344543 4677777777543 56777763331 12222333322211 11 33567789
Q ss_pred cCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCcc
Q 043412 260 AADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPT 296 (383)
Q Consensus 260 ~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~ 296 (383)
.||++|.... ..+-=|.|+|+|+|+--.+..+
T Consensus 253 ~a~l~I~nDS-----Gp~HlA~A~g~p~valfGpt~p 284 (322)
T PRK10964 253 GAKAVVSVDT-----GLSHLTAALDRPNITLYGPTDP 284 (322)
T ss_pred hCCEEEecCC-----cHHHHHHHhCCCEEEEECCCCc
Confidence 9999997653 3566688999999987654443
No 188
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=88.96 E-value=1.2 Score=40.82 Aligned_cols=101 Identities=16% Similarity=0.157 Sum_probs=59.1
Q ss_pred CcEEEEEeeccccccCH--HHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhC---CCC-----Ccccccc
Q 043412 189 KEFVFLSVFKWEYRKGW--DVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDS---DLE-----KPDDGWA 258 (383)
Q Consensus 189 ~~~~i~~~g~~~~~K~~--~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~---~~~-----~~v~~~~ 258 (383)
+.++++..|.-.+.|.+ +...+.++.+.++ +.+++++|+..+.+....+.+.+.+... .+. .++..++
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~--~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali 260 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQAR--GYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALI 260 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHC--CCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHH
Confidence 45677777765566654 4677777777543 6788888764211111112222211111 111 3456888
Q ss_pred ccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCcc
Q 043412 259 PAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPT 296 (383)
Q Consensus 259 ~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~ 296 (383)
+.||++|.... ..+-=|.|.|+|+|+--.+..+
T Consensus 261 ~~a~l~v~nDS-----Gp~HlAaA~g~P~v~lfGpt~p 293 (352)
T PRK10422 261 DHAQLFIGVDS-----APAHIAAAVNTPLICLFGATDH 293 (352)
T ss_pred HhCCEEEecCC-----HHHHHHHHcCCCEEEEECCCCc
Confidence 99999997653 3455678999999987544333
No 189
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=87.97 E-value=2.6 Score=38.32 Aligned_cols=100 Identities=14% Similarity=0.171 Sum_probs=59.7
Q ss_pred CcEEEEEeec-cccccCH--HHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhC--CCC-----Ccccccc
Q 043412 189 KEFVFLSVFK-WEYRKGW--DVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDS--DLE-----KPDDGWA 258 (383)
Q Consensus 189 ~~~~i~~~g~-~~~~K~~--~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~--~~~-----~~v~~~~ 258 (383)
+.++++..|. ..+.|.+ +...+.++.+.++ +.++++.|+.. +.+..+.+.+..... .+. .++..++
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~--~~~ivl~G~~~--e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali 249 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQ--GYQVVLFGSAK--DHPAGNEIEALLPGELRNLAGETSLDEAVDLI 249 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHC--CCEEEEEEChh--hHHHHHHHHHhCCcccccCCCCCCHHHHHHHH
Confidence 4566777765 3456654 4677777776543 57888888752 222223333222110 111 3456888
Q ss_pred ccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccc
Q 043412 259 PAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTE 297 (383)
Q Consensus 259 ~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e 297 (383)
+.||++|.... ..+-=|.|.|+|+|+--.+..+.
T Consensus 250 ~~a~l~I~~DS-----Gp~HlAaA~~~P~i~lfG~t~p~ 283 (334)
T TIGR02195 250 ALAKAVVTNDS-----GLMHVAAALNRPLVALYGSTSPD 283 (334)
T ss_pred HhCCEEEeeCC-----HHHHHHHHcCCCEEEEECCCChh
Confidence 99999997653 34556889999999875543333
No 190
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=87.13 E-value=0.78 Score=40.97 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=36.2
Q ss_pred cccccccCceEEecCCCCCCChHHHHHHHcCC-CEEEcCC--CCcccccc
Q 043412 254 DDGWAPAADVFVLPSRGEGWGRPLVEAMSMGL-PVIATNW--SGPTEYLT 300 (383)
Q Consensus 254 v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~-PvI~~~~--~g~~e~v~ 300 (383)
....++.+...+.|.-...+..-+.|||++|| |||.++. -...++++
T Consensus 230 ~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ld 279 (302)
T PF03016_consen 230 YMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLD 279 (302)
T ss_pred HHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecCcccCCcccccC
Confidence 45667888988888766668889999999998 8998765 34455554
No 191
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=87.04 E-value=2.7 Score=30.34 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=29.3
Q ss_pred cccccccCceEEecCCC---CCCChHHHHHHHcCCCEEEcCCCC
Q 043412 254 DDGWAPAADVFVLPSRG---EGWGRPLVEAMSMGLPVIATNWSG 294 (383)
Q Consensus 254 v~~~~~~adi~v~ps~~---e~~~~~~~Ea~a~G~PvI~~~~~g 294 (383)
+...+..+|++|+++.. ...-.+--+|-..|+|++.++..+
T Consensus 42 l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~ 85 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRG 85 (97)
T ss_pred HHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCC
Confidence 45566889999988653 223345567788899999998653
No 192
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=86.55 E-value=20 Score=32.57 Aligned_cols=312 Identities=15% Similarity=0.115 Sum_probs=154.0
Q ss_pred CCChhHHHHHHHHHHHhcccCCCceeeeecCCCcccc-hhhcCCChhhhhHHHHHHhhhcCCCccEEEecCCCC--CCCC
Q 043412 7 GGGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQSL-QFWEGLPHHMRNLAVELYNTECRTNETVVICHSEPG--AWYP 83 (383)
Q Consensus 7 ~~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~pDiV~~~~~~~--~~~~ 83 (383)
..|+.--+.-|+.-|++...+..+++.-...++.... ..+...... +..+.... .+.||++=-+..- .| .
T Consensus 17 ~NGi~QN~~fL~~lL~qs~~v~~V~Lvn~g~~~~~~~~~~~~~~~~~----~~~~~~~~--~~lDVlIEmg~ql~~~~-~ 89 (364)
T PF10933_consen 17 ENGINQNCIFLAMLLQQSPRVESVVLVNGGDGNPIPAALMLDLLDVP----LVDFDDAI--DELDVLIEMGAQLDPEW-L 89 (364)
T ss_pred hhchhhHHHHHHHHHhhCCCcceEEEEECCCCCcCCcccccccCCCc----eecHHHhc--ccCCEEEEccCccCHHH-H
Confidence 3577778888999999887766665544333222111 122222211 11122222 2789888765321 12 2
Q ss_pred cccccCCCCCCCCCCCccccc---ceeeeecCCCCHHHHHhcCCCCEEEEeChHHHH---HHHhcCCCCCCeEEecCCCc
Q 043412 84 PLFDTLPCPPTPGYGDFMAVI---GRTMFETDRVSPEHVKRCNRMDFVWVPTDFHVS---TFIRSGVDPAKVVKIVQPVH 157 (383)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~---~~~~~~~~~~~i~vi~ngid 157 (383)
..+....++.+ .|+.-..+. ...++.... .....-...|.|++.-+.... .+.-. ...++.++|.--+
T Consensus 90 ~~~~~~G~KvV-~y~~GndYv~~~E~~lF~k~~---~~~f~~~~yD~VW~lPq~~~~~~~yl~~l--~r~Pv~~vP~iWs 163 (364)
T PF10933_consen 90 DYMRARGGKVV-SYRCGNDYVMDIESMLFNKPS---GHLFNGAPYDEVWTLPQFENTCAPYLETL--HRCPVRVVPHIWS 163 (364)
T ss_pred HHHHHcCCeEE-EEeCCchHHHHhhHHhcCCCC---CccCCCCCCceeEeccchhhhchHHHHHH--hcCCceeeCccCC
Confidence 23344444444 332221111 111111111 111112668889876553332 33332 1236788887655
Q ss_pred CCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeeccccccCHHHHHHHHHHHhccCCC-eEEEEEeCCCCCCCc
Q 043412 158 VGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADG-VVLYLLTNPYHSGRD 236 (383)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~-~~l~i~G~~~~~~~~ 236 (383)
+-++......- . .....+|..- -.+...+-++=-++.-.|.--.-+-+..+.-+..|+ +..+.+..... ..
T Consensus 164 P~F~~~~~~~l-~---~~~~~FGY~p--~~~~~RvavfEPNi~vvK~~~~PmLi~E~aYR~~P~~v~~~~V~Nt~~--~k 235 (364)
T PF10933_consen 164 PRFLDQRIAQL-P---EHGLRFGYQP--GRPGKRVAVFEPNISVVKTCFIPMLICEEAYRADPDAVEHVYVTNTYH--LK 235 (364)
T ss_pred chhHHHHHHhh-h---hcCCcccccc--CCCCceEEEecCCceEEeecCccHHHHHHHHHhChhhcceEEEecchh--hh
Confidence 54432211110 0 0011111000 012233333333445556544444445555555665 55555555422 12
Q ss_pred hHHHHHHHHhhCCCC----------Cccc-cccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccccCCCce
Q 043412 237 FGNKIVNFVEDSDLE----------KPDD-GWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGY 305 (383)
Q Consensus 237 ~~~~~~~~~~~~~~~----------~~v~-~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~~g~ 305 (383)
....+..++..+.+. -++. ++-+..|++|+-.-..+......||+.-|=|.|.... ++.+ +|+
T Consensus 236 e~~~F~~f~~~ldlvr~gkasfegR~~~p~fla~~tD~VvSHqWeN~lNYlY~daLyggYPLVHNS~-----~l~d-~GY 309 (364)
T PF10933_consen 236 EHPTFVNFANSLDLVRDGKASFEGRFDFPDFLAQHTDAVVSHQWENPLNYLYYDALYGGYPLVHNSP-----LLKD-VGY 309 (364)
T ss_pred cCHHHHHHHHhhHHhhcCeeEEeeecChHHHHHhCCCEEEeccccchhhHHHHHHHhcCCCcccCcc-----hhcc-cCc
Confidence 234555566555542 1222 3447788888666556777789999999999998753 2222 444
Q ss_pred eeecccccccccCCCCcccccCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhcCCH
Q 043412 306 PLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVS-NVDEAKAKGKQAREDMIQRFSP 364 (383)
Q Consensus 306 ~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~~s~ 364 (383)
..+..|..+=++++.+++. .....+...+++++.+ .+++.
T Consensus 310 ------------------YY~~fD~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l-~~~~p 350 (364)
T PF10933_consen 310 ------------------YYPDFDAFEGARQLLRAIREHDADLDAYRARARRLL-DRLSP 350 (364)
T ss_pred ------------------CCCCccHHHHHHHHHHHHHHccccHHHHHHHHHHHH-HhhCC
Confidence 3444488888888888776 2333556666666653 33443
No 193
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=86.41 E-value=1.7 Score=31.07 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=32.1
Q ss_pred EEEEeCCCCCCCchHHHHHHHHhhCCCC--------CccccccccCceEEecCC
Q 043412 224 LYLLTNPYHSGRDFGNKIVNFVEDSDLE--------KPDDGWAPAADVFVLPSR 269 (383)
Q Consensus 224 l~i~G~~~~~~~~~~~~~~~~~~~~~~~--------~~v~~~~~~adi~v~ps~ 269 (383)
+.++|.|-...--....+++..+++|+. +.+..+...+|+++....
T Consensus 5 L~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~v~~~~~~~~~aDiiv~s~~ 58 (93)
T COG3414 5 LAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCAVDEIKALTDGADIIVTSTK 58 (93)
T ss_pred EEECCCCccHHHHHHHHHHHHHHHcCCCceeeeEEecccccCCCcccEEEEehH
Confidence 5566766444444557788899999995 445677788899886643
No 194
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=85.22 E-value=3.4 Score=37.72 Aligned_cols=101 Identities=15% Similarity=0.144 Sum_probs=58.4
Q ss_pred CcEEEEEeeccccccC--HHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCC---CC-----Ccccccc
Q 043412 189 KEFVFLSVFKWEYRKG--WDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSD---LE-----KPDDGWA 258 (383)
Q Consensus 189 ~~~~i~~~g~~~~~K~--~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~---~~-----~~v~~~~ 258 (383)
+..+++..|.-.+.|. .+...+.++.+.++ +.+++++|+....+.+..+.+.+...... +. .++..++
T Consensus 181 ~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~--~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali 258 (344)
T TIGR02201 181 QNYIVIQPTSRWFFKCWDNDRFSALIDALHAR--GYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALI 258 (344)
T ss_pred CCEEEEeCCCCccccCCCHHHHHHHHHHHHhC--CCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHH
Confidence 3556666665445554 45667777776543 57888888642111111223322211111 11 3456888
Q ss_pred ccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCcc
Q 043412 259 PAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPT 296 (383)
Q Consensus 259 ~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~ 296 (383)
+.||++|.... ..+-=|.|.|+|+|+--.+..+
T Consensus 259 ~~a~l~Vs~DS-----Gp~HlAaA~g~p~v~Lfgpt~p 291 (344)
T TIGR02201 259 DHARLFIGVDS-----VPMHMAAALGTPLVALFGPSKH 291 (344)
T ss_pred HhCCEEEecCC-----HHHHHHHHcCCCEEEEECCCCc
Confidence 99999997753 3566688999999987543333
No 195
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=84.48 E-value=22 Score=29.41 Aligned_cols=105 Identities=13% Similarity=0.220 Sum_probs=61.4
Q ss_pred EEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchH-HHHHHHHhhCCCCCccccccccCceEEecCC
Q 043412 191 FVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFG-NKIVNFVEDSDLEKPDDGWAPAADVFVLPSR 269 (383)
Q Consensus 191 ~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~adi~v~ps~ 269 (383)
+-|+-.|++ |...+++.+..-+..++++.+.++|+|..-+++.. ....+.+++.+- ..=+++.|.-
T Consensus 5 ig~ik~Gni----Gts~v~dlllDErAdRedi~vrVvgsgaKM~Pe~veaav~~~~e~~~p---------Dfvi~isPNp 71 (277)
T COG1927 5 IGFIKCGNI----GTSPVVDLLLDERADREDIEVRVVGSGAKMDPECVEAAVTEMLEEFNP---------DFVIYISPNP 71 (277)
T ss_pred EEEEEeccc----chHHHHHHHHHhhcccCCceEEEeccccccChHHHHHHHHHHHHhcCC---------CEEEEeCCCC
Confidence 346677776 45555655544445578999999999854332222 222223332221 2224556666
Q ss_pred CCCCChHHHHHHH-cCCCEEEc-CCCCc--ccccc-CCCceeee
Q 043412 270 GEGWGRPLVEAMS-MGLPVIAT-NWSGP--TEYLT-EENGYPLL 308 (383)
Q Consensus 270 ~e~~~~~~~Ea~a-~G~PvI~~-~~~g~--~e~v~-~~~g~~~~ 308 (383)
.-+.|-+.-|.++ +|+|+|.- +.+|. .|-++ ++-||++-
T Consensus 72 aaPGP~kARE~l~~s~~PaiiigDaPg~~vkdeleeqGlGYIiv 115 (277)
T COG1927 72 AAPGPKKAREILSDSDVPAIIIGDAPGLKVKDELEEQGLGYIIV 115 (277)
T ss_pred CCCCchHHHHHHhhcCCCEEEecCCccchhHHHHHhcCCeEEEe
Confidence 6777889999988 79996554 44543 33333 36777664
No 196
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=83.89 E-value=14 Score=32.16 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 043412 331 DKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIKD 377 (383)
Q Consensus 331 ~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~ 377 (383)
+++.++|+.+.++++..+++++++++.+.+..+.+.+..-+..++.+
T Consensus 202 ~~l~~~i~~~~~~~~~a~~Ia~~~~~~~~~~L~~~~~~~Y~~~ll~e 248 (256)
T smart00672 202 RELKEAVDWGNEHDKKAQEIGKRGSEFIQQNLSMEDVYDYMFHLLQE 248 (256)
T ss_pred hhHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 45999999999999999999999999998889999999888887765
No 197
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=83.05 E-value=39 Score=31.23 Aligned_cols=187 Identities=12% Similarity=0.106 Sum_probs=90.8
Q ss_pred cCCCCEEEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccc-cCCccccccCCCCCCCCcEEEEEeeccc
Q 043412 122 CNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLA-SIGKPVLGLSNMNTSSKEFVFLSVFKWE 200 (383)
Q Consensus 122 ~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~i~~~g~~~ 200 (383)
++.+..+++=-+...+.++..|++. .... |+...-+......... ... +.....+.+.| +.
T Consensus 150 ~~~~s~i~vRD~~S~~llk~~gi~a---~l~~---D~Af~L~~~~~~~~~~~~~~-----------~~~~~~i~lr~-~~ 211 (385)
T COG2327 150 LGGCSAISVRDPVSYELLKQLGINA---RLVT---DPAFLLPASSQNATASDVEA-----------REKTVAITLRG-LH 211 (385)
T ss_pred hcCCcEEEEecHHhHHHHHHcCCCe---Eeec---Ccceeccccccccccccccc-----------ccceEEEEecc-cC
Confidence 6889999998888889999888752 2222 5443332222111110 000 12233344433 33
Q ss_pred c--ccCH---HHHHHHHHHH-hccCCCeEEEEEeCCCCCCCchHHHHHHHHhhC-CC--C-----CccccccccCceEEe
Q 043412 201 Y--RKGW---DVLLKAYLEE-FSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDS-DL--E-----KPDDGWAPAADVFVL 266 (383)
Q Consensus 201 ~--~K~~---~~ll~a~~~l-~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~-~~--~-----~~v~~~~~~adi~v~ 266 (383)
+ .+.. ...-+++..+ ......+++...-.+..++-...+.+...+... ++ . +.+...++.+|++|.
T Consensus 212 ~~~t~~~~~~~~v~~~l~~~~~~~~~~~~i~~~~~~~s~d~~va~~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg 291 (385)
T COG2327 212 PDNTAQRSILKYVNEALDLVERQVKALWRITLIDYGASDDLAVADAIAQLVLDSAEILVSSDEYAEELGGILAACDLIVG 291 (385)
T ss_pred CchhhhHHHHHHHHHHHHHHHHhhhcceEEEeeeccccchhHHHHHHHhhcCCccceEeecchHHHHHHHHhccCceEEe
Confidence 3 2222 1223333332 122234444444333222222222232222211 00 0 122346688898884
Q ss_pred cCCCCCCChHHHHHHHcCCCEEEcCCCCc-cccccC-C-CceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcC
Q 043412 267 PSRGEGWGRPLVEAMSMGLPVIATNWSGP-TEYLTE-E-NGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSN 343 (383)
Q Consensus 267 ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~-~e~v~~-~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~ 343 (383)
.-. .+++=|++.|+|+|+-....= ..+.++ + .++..+. .+.+.+.+.+...+.+.+
T Consensus 292 ~R~-----HsaI~al~~g~p~i~i~Y~~K~~~l~~~~gl~~~~~~i----------------~~~~~~~l~~~~~e~~~~ 350 (385)
T COG2327 292 MRL-----HSAIMALAFGVPAIAIAYDPKVRGLMQDLGLPGFAIDI----------------DPLDAEILSAVVLERLTK 350 (385)
T ss_pred ehh-----HHHHHHHhcCCCeEEEeecHHHHHHHHHcCCCcccccC----------------CCCchHHHHHHHHHHHhc
Confidence 432 368889999999999877422 222222 2 2333332 233888888888777764
Q ss_pred -HHHH
Q 043412 344 -VDEA 347 (383)
Q Consensus 344 -~~~~ 347 (383)
++.+
T Consensus 351 ~~~~~ 355 (385)
T COG2327 351 LDELR 355 (385)
T ss_pred cHHHH
Confidence 4433
No 198
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.81 E-value=4.1 Score=35.78 Aligned_cols=213 Identities=15% Similarity=0.090 Sum_probs=111.8
Q ss_pred HHHHHhcCCCCEEEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEE
Q 043412 116 PEHVKRCNRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLS 195 (383)
Q Consensus 116 ~~~~~~~~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ 195 (383)
.+|...-++|-.|+.-...+.+.+.+.|+ +...+.|++- +-..|.+....... .....+-+.
T Consensus 170 pwwlm~~rrc~~vf~rD~~Taq~L~~rgv---na~~vGnpmm-D~L~p~~~~~q~l~--------------~g~~viaLL 231 (412)
T COG4370 170 PWWLMLRRRCWAVFPRDALTAQHLANRGV---NAAYVGNPMM-DGLPPPERDPQLLL--------------TGVPVIALL 231 (412)
T ss_pred hHHHHhcccceeeeccccccHHHHHhcCC---chhhccChhh-ccCCCccCCchhhc--------------cCCceEEec
Confidence 34555568899999988899999999888 4566666542 12233222111000 122333444
Q ss_pred ee-c-cccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCCC--c---------------ccc
Q 043412 196 VF-K-WEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLEK--P---------------DDG 256 (383)
Q Consensus 196 ~g-~-~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~--~---------------v~~ 256 (383)
.| | -+...|+..++.++..+......+.| .+..- ++--...+....+..|.+- + ...
T Consensus 232 PGsR~pea~~nl~~il~slcal~~~~a~vvf--w~ai~--~~lpl~~l~~l~e~~gWq~~ad~~~kdnc~l~lsqqsfad 307 (412)
T COG4370 232 PGSRVPEAQTNLAVILGSLCALPAMFALVVF--WAAIA--PELPLLLLWTLEERQGWQPLADRFGKDNCSLWLSQQSFAD 307 (412)
T ss_pred CCCCChHHHhhHHHHHHHHhhhHHHHHHHHH--HhccC--cCCCHHHHHHHHHhcCcchhhhhhccCceEEEEeHHHHHH
Confidence 44 3 24578888888876665444333222 22110 0111244555566666541 1 112
Q ss_pred ccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccc------cC--CCceeeecccccccccCCCCcccccCC
Q 043412 257 WAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYL------TE--ENGYPLLVGRMSEVTEGPFKGHFWAEP 328 (383)
Q Consensus 257 ~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v------~~--~~g~~~~~~~~~~~~~~~~~g~~~~~~ 328 (383)
++..+|+.+ .--|...-.+...|+|||..+..|.--.- .. ++.+. ....
T Consensus 308 iLH~adaal-----gmAGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~slt------------------lv~~ 364 (412)
T COG4370 308 ILHAADAAL-----GMAGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLT------------------LVRP 364 (412)
T ss_pred HHHHHHHHH-----HhccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceee------------------ecCC
Confidence 223333322 12355666788899999999874432110 00 11111 1111
Q ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 043412 329 SVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIKD 377 (383)
Q Consensus 329 ~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~ 377 (383)
.++.-..+..+++.|++....+..++++++-+- ..+.++.+.+.+
T Consensus 365 ~aq~a~~~~q~ll~dp~r~~air~nGqrRiGqa----Gaa~rIAe~l~e 409 (412)
T COG4370 365 EAQAAAQAVQELLGDPQRLTAIRHNGQRRIGQA----GAARRIAEELGE 409 (412)
T ss_pred chhhHHHHHHHHhcChHHHHHHHhcchhhccCc----chHHHHHHHHHH
Confidence 344444444559999999888888888775443 344555544443
No 199
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=78.97 E-value=11 Score=35.12 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 043412 329 SVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIKDI 378 (383)
Q Consensus 329 ~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~ 378 (383)
+-+++.++|+.+.++++..++++++|++.+.+..+.+.+..-+..++.+.
T Consensus 269 d~sdL~~~v~w~~~~~~~A~~IA~~g~~f~~~~L~~~~~~~Y~~~LL~eY 318 (395)
T PF05686_consen 269 DLSDLEEKVEWLNAHDDEAQRIAENGQRFAREYLTMEDVYCYWRRLLLEY 318 (395)
T ss_pred chhhHHHHhhhcccChHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 78999999999999999999999999999889999999988887777653
No 200
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=76.43 E-value=11 Score=36.15 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=35.1
Q ss_pred ccccccccCceEEecCCCCCCChHHHHHHHcCC-CEEEcCC
Q 043412 253 PDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGL-PVIATNW 292 (383)
Q Consensus 253 ~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~-PvI~~~~ 292 (383)
.....++.+-..+.|.-.+...-.+.||+.+|| |||.++.
T Consensus 336 ~y~~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~ 376 (464)
T KOG1021|consen 336 NYMEGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDG 376 (464)
T ss_pred hHHHHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCC
Confidence 445777899999999988888889999999998 9999987
No 201
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=75.46 E-value=15 Score=28.75 Aligned_cols=92 Identities=16% Similarity=0.138 Sum_probs=54.1
Q ss_pred cEEEEEeeccccccCHHHHHHHH------HHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhC-------CCCCcccc
Q 043412 190 EFVFLSVFKWEYRKGWDVLLKAY------LEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDS-------DLEKPDDG 256 (383)
Q Consensus 190 ~~~i~~~g~~~~~K~~~~ll~a~------~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~ 256 (383)
.-+|+.+|.- -.|.|+.++ .+|.+..-+--++=+|.|.... .+......+.. .+...+..
T Consensus 4 ~~vFVTVGtT----~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~---~d~~~~~~k~~gl~id~y~f~psl~e 76 (170)
T KOG3349|consen 4 MTVFVTVGTT----SFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFF---GDPIDLIRKNGGLTIDGYDFSPSLTE 76 (170)
T ss_pred eEEEEEeccc----cHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCC---CCHHHhhcccCCeEEEEEecCccHHH
Confidence 4578888853 267777543 3444433332334456663211 12222221222 33467788
Q ss_pred ccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCC
Q 043412 257 WAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNW 292 (383)
Q Consensus 257 ~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~ 292 (383)
.++.||+++ ..+..-+++|.+..|+|.|+.-+
T Consensus 77 ~I~~AdlVI----sHAGaGS~letL~l~KPlivVvN 108 (170)
T KOG3349|consen 77 DIRSADLVI----SHAGAGSCLETLRLGKPLIVVVN 108 (170)
T ss_pred HHhhccEEE----ecCCcchHHHHHHcCCCEEEEeC
Confidence 889999998 33445689999999999766544
No 202
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.29 E-value=64 Score=29.86 Aligned_cols=159 Identities=11% Similarity=0.040 Sum_probs=86.4
Q ss_pred EeeccccccCHHHHHHHHHHHhccCCCeEEEEEeC-CCC-CCCchHHHHHHHHhhCCCCCcccccc--------------
Q 043412 195 SVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTN-PYH-SGRDFGNKIVNFVEDSDLEKPDDGWA-------------- 258 (383)
Q Consensus 195 ~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~-~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~-------------- 258 (383)
+.|+-++.+-.....+.+.+++++ ++.++|+-. |.+ .+....+++.+..+..+. +++...+
T Consensus 159 ~ygsyte~dpv~ia~egv~~fKke--~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~P-d~vi~VmDasiGQaae~Qa~a 235 (483)
T KOG0780|consen 159 FYGSYTEADPVKIASEGVDRFKKE--NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKP-DEIIFVMDASIGQAAEAQARA 235 (483)
T ss_pred eEecccccchHHHHHHHHHHHHhc--CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCC-CeEEEEEeccccHhHHHHHHH
Confidence 334445566666777777777665 455555432 211 222333444444444443 2222221
Q ss_pred --ccCce--EEecCC----CCCCChHHHHHHHcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCH
Q 043412 259 --PAADV--FVLPSR----GEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSV 330 (383)
Q Consensus 259 --~~adi--~v~ps~----~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~ 330 (383)
...|+ ++.+-. ..|..++..+ +.++||+--..|.+-|-++. ....++-+.++..+|.
T Consensus 236 Fk~~vdvg~vIlTKlDGhakGGgAlSaVa--aTksPIiFIGtGEhmdDlE~-------------F~pk~FvsrlLGmGDi 300 (483)
T KOG0780|consen 236 FKETVDVGAVILTKLDGHAKGGGALSAVA--ATKSPIIFIGTGEHMDDLEP-------------FDPKPFVSRLLGMGDI 300 (483)
T ss_pred HHHhhccceEEEEecccCCCCCceeeehh--hhCCCEEEEecCccccccCC-------------CChHHHHHHHhccccH
Confidence 23333 333321 2344455554 57899999888766555543 1112233445555699
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043412 331 DKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIK 376 (383)
Q Consensus 331 ~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~ 376 (383)
+.|.+.+.++..+ ..+++.++- -.-+|+...+.+++..+.+
T Consensus 301 ~glvek~~ev~~~--d~~el~~kl---~~gkFtlrd~y~Qfq~imk 341 (483)
T KOG0780|consen 301 EGLVEKVQEVGKD--DAKELVEKL---KQGKFTLRDFYDQFQNIMK 341 (483)
T ss_pred HHHHHHHHHHhhh--hHHHHHHHH---HhCCccHHHHHHHHHHHHh
Confidence 9999999998832 122233332 1358999999988877764
No 203
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=75.09 E-value=13 Score=34.03 Aligned_cols=100 Identities=13% Similarity=0.126 Sum_probs=57.4
Q ss_pred CCcEEEEEeecc-ccccCH--HHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhh------CCCC-----Cc
Q 043412 188 SKEFVFLSVFKW-EYRKGW--DVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVED------SDLE-----KP 253 (383)
Q Consensus 188 ~~~~~i~~~g~~-~~~K~~--~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~------~~~~-----~~ 253 (383)
++.++.+..|.- .+.|.+ +.+.+.+..+.. .++++++.|+.. +.+..+.+.+.... ..+. .+
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~--~~~~vvl~Gg~~--e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~e 254 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLID--EGYQVVLFGSAK--DHEAGNEILAALNTEQQAWCRNLAGETQLEQ 254 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHH--CCCeEEEEeCHH--hHHHHHHHHHhcccccccceeeccCCCCHHH
Confidence 345666677653 355654 456666666653 367888888652 11222222222110 1111 34
Q ss_pred cccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCcc
Q 043412 254 DDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPT 296 (383)
Q Consensus 254 v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~ 296 (383)
+..+++.||++|.... ..+-=|.|.|+|+|+--.+..+
T Consensus 255 l~ali~~a~l~I~nDT-----Gp~HlAaA~g~P~valfGpt~p 292 (348)
T PRK10916 255 AVILIAACKAIVTNDS-----GLMHVAAALNRPLVALYGPSSP 292 (348)
T ss_pred HHHHHHhCCEEEecCC-----hHHHHHHHhCCCEEEEECCCCc
Confidence 4578899999997653 2455688999999986544333
No 204
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=73.81 E-value=62 Score=28.37 Aligned_cols=96 Identities=14% Similarity=-0.009 Sum_probs=60.1
Q ss_pred EEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCC---------CCchHHHHHHHHhhCCCC--------Cccc
Q 043412 193 FLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHS---------GRDFGNKIVNFVEDSDLE--------KPDD 255 (383)
Q Consensus 193 i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~---------~~~~~~~~~~~~~~~~~~--------~~v~ 255 (383)
++.+| .....+.+.+++.++++++. .++++..|.-.++ ..+....+.+..++.|+. ..+.
T Consensus 29 ~~iaG-PCsie~~~~~~~~A~~lk~~--g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~ 105 (266)
T PRK13398 29 IIIAG-PCAVESEEQMVKVAEKLKEL--GVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDTRDVE 105 (266)
T ss_pred EEEEe-CCcCCCHHHHHHHHHHHHHc--CCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCChhhHH
Confidence 34444 33456778888888888774 4556666622111 123346677788888886 3334
Q ss_pred cccccCceEEecCCCCCCChHHH-HHHHcCCCEEEcCC
Q 043412 256 GWAPAADVFVLPSRGEGWGRPLV-EAMSMGLPVIATNW 292 (383)
Q Consensus 256 ~~~~~adi~v~ps~~e~~~~~~~-Ea~a~G~PvI~~~~ 292 (383)
.+...+|++-.+|+. .....++ ++...|+||+.++.
T Consensus 106 ~l~~~vd~~kIga~~-~~n~~LL~~~a~~gkPV~lk~G 142 (266)
T PRK13398 106 EVADYADMLQIGSRN-MQNFELLKEVGKTKKPILLKRG 142 (266)
T ss_pred HHHHhCCEEEECccc-ccCHHHHHHHhcCCCcEEEeCC
Confidence 444568988888863 2234344 44567999999986
No 205
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=70.46 E-value=97 Score=29.21 Aligned_cols=68 Identities=10% Similarity=-0.032 Sum_probs=39.5
Q ss_pred EEEEEeCCCCCCCchHHHHHHHHhhCC-CC----CccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccc
Q 043412 223 VLYLLTNPYHSGRDFGNKIVNFVEDSD-LE----KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTE 297 (383)
Q Consensus 223 ~l~i~G~~~~~~~~~~~~~~~~~~~~~-~~----~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e 297 (383)
++.++... .+..+.++..++ .. +++...+..+|++++.+....+ +.- ..+.-+.|.+.-|.+-.++
T Consensus 207 ~I~V~nRt-------~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~~-vi~-~~~~~~~~~~~iDLavPRd 277 (414)
T PRK13940 207 QIMLANRT-------IEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLEY-IVT-CKYVGDKPRVFIDISIPQA 277 (414)
T ss_pred EEEEECCC-------HHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCCe-eEC-HHHhCCCCeEEEEeCCCCC
Confidence 56666643 233444555443 11 4456777899999988753222 222 2334578888888865555
Q ss_pred cc
Q 043412 298 YL 299 (383)
Q Consensus 298 ~v 299 (383)
+=
T Consensus 278 id 279 (414)
T PRK13940 278 LD 279 (414)
T ss_pred CC
Confidence 43
No 206
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=70.20 E-value=54 Score=28.37 Aligned_cols=88 Identities=9% Similarity=-0.014 Sum_probs=58.4
Q ss_pred ccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCC---------chHHHHHHHHhhCCCC--------CccccccccCceE
Q 043412 202 RKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGR---------DFGNKIVNFVEDSDLE--------KPDDGWAPAADVF 264 (383)
Q Consensus 202 ~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~---------~~~~~~~~~~~~~~~~--------~~v~~~~~~adi~ 264 (383)
...-+.+++.++.+++. .+.++..|.-.++.. +-...+.+..++.|+. ..+..+...+|++
T Consensus 25 vEs~e~~~~~a~~~~~~--g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e~vdil 102 (250)
T PRK13397 25 IESYDHIRLAASSAKKL--GYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIMSERQLEEAYDYLDVI 102 (250)
T ss_pred cCCHHHHHHHHHHHHHc--CCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHhcCCEE
Confidence 34556777777776544 567777776543222 2346677888888886 3444555679999
Q ss_pred EecCCCCCCChHHHHHH-HcCCCEEEcCC
Q 043412 265 VLPSRGEGWGRPLVEAM-SMGLPVIATNW 292 (383)
Q Consensus 265 v~ps~~e~~~~~~~Ea~-a~G~PvI~~~~ 292 (383)
-.||+. .....+++++ ..|+||+.+..
T Consensus 103 qIgs~~-~~n~~LL~~va~tgkPVilk~G 130 (250)
T PRK13397 103 QVGARN-MQNFEFLKTLSHIDKPILFKRG 130 (250)
T ss_pred EECccc-ccCHHHHHHHHccCCeEEEeCC
Confidence 999863 3346677766 56999999876
No 207
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=69.59 E-value=72 Score=29.21 Aligned_cols=100 Identities=12% Similarity=-0.022 Sum_probs=60.3
Q ss_pred cEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCC---------CchHHHHHHHHhhCCCC--------C
Q 043412 190 EFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSG---------RDFGNKIVNFVEDSDLE--------K 252 (383)
Q Consensus 190 ~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~---------~~~~~~~~~~~~~~~~~--------~ 252 (383)
+..++.+| ...-.+.+.+++.++.+++. .++++..|.-.++. .+-.+.+.+..++.|+. +
T Consensus 100 ~~l~vIAG-PCsIEs~eq~l~~A~~lk~~--g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~~~tev~d~~ 176 (352)
T PRK13396 100 HPVVVVAG-PCSVENEEMIVETAKRVKAA--GAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLGIITEVMDAA 176 (352)
T ss_pred CeEEEEEe-CCcccCHHHHHHHHHHHHHc--CCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCcEEEeeCCHH
Confidence 33444555 23445667788888887665 45555544432211 12235566667788885 3
Q ss_pred ccccccccCceEEecCCCCCCChHHHHHH-HcCCCEEEcCCC
Q 043412 253 PDDGWAPAADVFVLPSRGEGWGRPLVEAM-SMGLPVIATNWS 293 (383)
Q Consensus 253 ~v~~~~~~adi~v~ps~~e~~~~~~~Ea~-a~G~PvI~~~~~ 293 (383)
.+..+...+|++-.+|+. -....+++++ ..|+||+.+..-
T Consensus 177 ~v~~~~~~~d~lqIga~~-~~n~~LL~~va~t~kPVllk~G~ 217 (352)
T PRK13396 177 DLEKIAEVADVIQVGARN-MQNFSLLKKVGAQDKPVLLKRGM 217 (352)
T ss_pred HHHHHHhhCCeEEECccc-ccCHHHHHHHHccCCeEEEeCCC
Confidence 344444568999999863 2234555555 679999998763
No 208
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=69.45 E-value=21 Score=34.46 Aligned_cols=26 Identities=15% Similarity=0.013 Sum_probs=20.0
Q ss_pred CCChhHHHHHHHHHHHhcccCCCcee
Q 043412 7 GGGYSSESWSYILALNEHVKNPRFKL 32 (383)
Q Consensus 7 ~~G~~~~~~~l~~~l~~~g~~~~~~~ 32 (383)
+.|=-....++++.|.++||..++..
T Consensus 15 ~~sH~~~~~~la~~L~~~gh~vt~~~ 40 (496)
T KOG1192|consen 15 GQSHLNPMLQLAKRLAERGHNVTVVT 40 (496)
T ss_pred cccHHHHHHHHHHHHHHcCCceEEEE
Confidence 55566778899999999999765533
No 209
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=67.99 E-value=34 Score=29.93 Aligned_cols=304 Identities=11% Similarity=0.062 Sum_probs=123.2
Q ss_pred ChhHHHHHHHHHHHhcccCCCceeeeecCCCcccchhhc--CCChhhhhHHHHHHhhhcCCCccEEEecCCCCCCCC---
Q 043412 9 GYSSESWSYILALNEHVKNPRFKLAIEHHGDLQSLQFWE--GLPHHMRNLAVELYNTECRTNETVVICHSEPGAWYP--- 83 (383)
Q Consensus 9 G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~pDiV~~~~~~~~~~~--- 83 (383)
|+.+.+.+.-.-..+.|+...+..+....-...+..-.. .++...+.-+..+.+.+. ++||++.++.++.-.-
T Consensus 2 GVTr~a~e~~~wf~KNg~~~~i~~a~e~sftR~dsH~~~~~si~k~~~~e~de~v~~vN--~yDI~m~nSvPa~~vqE~~ 79 (355)
T PF11440_consen 2 GVTRNALEMRDWFDKNGVEFTIVSADEKSFTRPDSHDSKSFSIPKYLAKEYDETVKKVN--DYDIVMFNSVPATKVQEAI 79 (355)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEETSS--TTTTSSS-TTTEEEE-TTTHHHHHHHHHT--SSSEEEEEE--BTTS-HHH
T ss_pred CccccHHHHHHHHHhcCCeeEEEEecccccCCccccccceeeeehhhHHHHHHHHHHhh--ccCEEEEecccCchHHHHH
Confidence 678888888888899888655433222111111110011 122223334445555444 8999999876552221
Q ss_pred -cccccCCCCCCCCCCCcccccceeeeecCCCCHHHHHhcCCCCEEEEeChHHH--HHHH-hc-C---CCCCCeEEecCC
Q 043412 84 -PLFDTLPCPPTPGYGDFMAVIGRTMFETDRVSPEHVKRCNRMDFVWVPTDFHV--STFI-RS-G---VDPAKVVKIVQP 155 (383)
Q Consensus 84 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~--~~~~-~~-~---~~~~~i~vi~ng 155 (383)
..+..+.-...+........|........ ....+...++.+|.|.+.|...- +.+. .+ + -.-+++.-.|..
T Consensus 80 iNnY~kii~~Ik~~ik~V~~~Hdh~~lsI~-rn~~le~~m~~~DvIfshs~~g~f~kv~m~~l~Ps~~~l~~~i~~~p~v 158 (355)
T PF11440_consen 80 INNYEKIIKKIKPSIKVVGFMHDHNKLSID-RNPYLEGTMNEMDVIFSHSDNGWFSKVLMKELLPSKVSLFDRIKKFPMV 158 (355)
T ss_dssp HHHHHHHHHCS-TTSEEEEEE---SHHHHT-TBSSHHHHHHH-SEEEES-TTSHHHHTHHHHHS-SS--SSS-------E
T ss_pred HHHHHHHHHhccccceeEEEeeccceeecc-ccccHHHHHHhhcEEEeccccchHHHHHHHhhccccCchhhhhhhccee
Confidence 01111100000011101111111111111 12234445688999999775432 2222 21 1 112345555544
Q ss_pred CcCCCCCCCCC-CCCccccCCccccccCCCCCCCCcEEE---EEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCC
Q 043412 156 VHVGFFDPVNC-DPIDLASIGKPVLGLSNMNTSSKEFVF---LSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPY 231 (383)
Q Consensus 156 id~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~i---~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~ 231 (383)
.+.+ |... ...+ ..+. .+...+.. +|+||....||+..+++.....++. ++..-++-|-.
T Consensus 159 ~nfq---pp~~i~~~R----styw-------kd~se~nmnv~~yigR~Tt~kG~~~mfD~h~~~lK~-~~~~t~~~Gie- 222 (355)
T PF11440_consen 159 FNFQ---PPMDINKYR----STYW-------KDVSEKNMNVNRYIGRQTTWKGPRRMFDLHEKILKP-AGFKTIMEGIE- 222 (355)
T ss_dssp EE-------B-HHHHH----HHH----------GGGSEEEEEEEE--SSGGG-HHHHHHHHHHTTTT-TT-EEEEE----
T ss_pred eecC---CcccHHHHH----HHHh-------hhhHhhhcccceeeeeeeeecCcHHHhhhHHHhcCC-cchhHHhhhhh-
Confidence 3322 2111 0000 0000 01223444 8999999999999999998886655 78888888753
Q ss_pred CCCCchHHHHHHH------Hh-----hCCCC-------------CccccccccCceEEecCC------CCCCChHHHHHH
Q 043412 232 HSGRDFGNKIVNF------VE-----DSDLE-------------KPDDGWAPAADVFVLPSR------GEGWGRPLVEAM 281 (383)
Q Consensus 232 ~~~~~~~~~~~~~------~~-----~~~~~-------------~~v~~~~~~adi~v~ps~------~e~~~~~~~Ea~ 281 (383)
+. ...-.+.+. .. +..+. ++....++.+-....-+. .+..-.+-+|..
T Consensus 223 -rS-~A~~~i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~E~~~~Maks~Fgy~~~k~~~~y~~r~mEYt~iE~~ 300 (355)
T PF11440_consen 223 -RS-PAKISIKDHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYIRSEGLERMAKSLFGYQLSKLQQKYLQRSMEYTQIELI 300 (355)
T ss_dssp -SS-THHHHHHHTT--EEEE-CTGGGG---SSS--EEEESS--HHHHHHHHHTEEEEEE-----GGG-SS---HHHHHHH
T ss_pred -cC-CceeeeecCCcccccCccccccCcccCCCCcceecchhhhHHHHHHHhhccceeecHHHHHHHHHhhhhhheeeee
Confidence 22 211112111 00 00000 011122233322222221 244667899999
Q ss_pred HcCC-CEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcC
Q 043412 282 SMGL-PVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSN 343 (383)
Q Consensus 282 a~G~-PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~ 343 (383)
|||+ ||.-..+|...-+--++.-+ ...+...+.+++.|.++-.+.|.++-++
T Consensus 301 A~GtIPVF~k~~GEN~r~~~D~~~~----------~~~~~~~I~~De~dle~T~ekl~E~a~~ 353 (355)
T PF11440_consen 301 AVGTIPVFDKSWGENNRFTLDGTRY----------IDHPYSAIYFDENDLESTVEKLIEVANN 353 (355)
T ss_dssp HCTSEEEEEHHHHHHSB-TTTSSBG----------GSS--S-EEE-TTSHHHHHHHHHHHHT-
T ss_pred eeceeeeeeccccccceeeecCcee----------eccCcceeEeccchHHHHHHHHHHHhcc
Confidence 9998 77777776544422222111 1222335556666888888888877654
No 210
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=64.18 E-value=65 Score=29.46 Aligned_cols=83 Identities=8% Similarity=0.172 Sum_probs=50.8
Q ss_pred HHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCCC------------cccccc----ccCceEEecCC-CC
Q 043412 209 LKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLEK------------PDDGWA----PAADVFVLPSR-GE 271 (383)
Q Consensus 209 l~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~~~----~~adi~v~ps~-~e 271 (383)
++|+ ++.++.|+-++++.+-|-+...+........+...++.+ -+..++ ...|-|+.|.. .-
T Consensus 125 ldAl-~iA~~nPdk~VVF~avGFETTaP~~A~~i~~a~~~~~~Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHVs~ 203 (369)
T TIGR00075 125 MDAL-KIAKENPDRKVVFFAIGFETTAPTTASTLLSAKAEDINNFFFLSAHRLVPPAVEALLENPAVQIDAFLAPGHVST 203 (369)
T ss_pred HHHH-HHHHHCCCCeEEEEecCchhccHHHHHHHHHHHHcCCCcEEEEEeccccHHHHHHHHcCCCCCccEEEecCEEEE
Confidence 4455 333457888888888886655555555555555555531 112222 34688999975 23
Q ss_pred CCChHHHHHHH--cCCCEEEcCC
Q 043412 272 GWGRPLVEAMS--MGLPVIATNW 292 (383)
Q Consensus 272 ~~~~~~~Ea~a--~G~PvI~~~~ 292 (383)
-.|....+.++ +++|+|++..
T Consensus 204 I~G~~~y~~l~~~y~~P~VVaGF 226 (369)
T TIGR00075 204 IIGAKPYAPIAEKYKIPIVIAGF 226 (369)
T ss_pred EeccchhHHHHHHcCCCeEEecc
Confidence 45666666654 6899999876
No 211
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=62.46 E-value=45 Score=22.43 Aligned_cols=55 Identities=5% Similarity=0.052 Sum_probs=36.0
Q ss_pred cEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCC
Q 043412 190 EFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDL 250 (383)
Q Consensus 190 ~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~ 250 (383)
..+++..|| ...+.+.+-.++.++..+.|+.. ++.|+.+ ........+++++.++
T Consensus 4 ~rVli~GgR--~~~D~~~i~~~Ld~~~~~~~~~~-lvhGga~---~GaD~iA~~wA~~~gv 58 (71)
T PF10686_consen 4 MRVLITGGR--DWTDHELIWAALDKVHARHPDMV-LVHGGAP---KGADRIAARWARERGV 58 (71)
T ss_pred CEEEEEECC--ccccHHHHHHHHHHHHHhCCCEE-EEECCCC---CCHHHHHHHHHHHCCC
Confidence 344555554 45578889999999988888866 5555431 2344555677777776
No 212
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=62.28 E-value=45 Score=28.55 Aligned_cols=102 Identities=16% Similarity=0.099 Sum_probs=60.1
Q ss_pred EEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCC--CCCCchHHHHHHHHhhCCCC-------CccccccccC
Q 043412 191 FVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPY--HSGRDFGNKIVNFVEDSDLE-------KPDDGWAPAA 261 (383)
Q Consensus 191 ~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~a 261 (383)
..+++.+++...-=++-....++.+..+.+ ++.++.... .+...+.+..++..+.+|.. ++....+..|
T Consensus 3 ~ll~s~~~~~~~~~l~~~~~~~~~~~~~~~--~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~~a 80 (233)
T PRK05282 3 LLLLSNSTLPGTGYLEHALPLIAELLAGRR--KAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIENA 80 (233)
T ss_pred EEEEecCCCCCCchHHHHHHHHHHHHcCCC--eEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHhcC
Confidence 345555555432223455555666554333 455554433 22234556677777778775 3344567899
Q ss_pred ceEEecCC--------C--CCCChHHHHHHHcCCCEEEcCCCC
Q 043412 262 DVFVLPSR--------G--EGWGRPLVEAMSMGLPVIATNWSG 294 (383)
Q Consensus 262 di~v~ps~--------~--e~~~~~~~Ea~a~G~PvI~~~~~g 294 (383)
|+++.+-- + .++--.+-|+...|+|++.+..|.
T Consensus 81 d~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGA 123 (233)
T PRK05282 81 EAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGA 123 (233)
T ss_pred CEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHH
Confidence 98777631 1 233335678999999999988764
No 213
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=62.16 E-value=13 Score=29.61 Aligned_cols=36 Identities=25% Similarity=0.463 Sum_probs=26.8
Q ss_pred ccCceEEecCC----CCCCCh--HHHHHHHcCCCEEEcCCCC
Q 043412 259 PAADVFVLPSR----GEGWGR--PLVEAMSMGLPVIATNWSG 294 (383)
Q Consensus 259 ~~adi~v~ps~----~e~~~~--~~~Ea~a~G~PvI~~~~~g 294 (383)
..+|++|.--+ .+|-|+ .+.+|++.|+||++.-...
T Consensus 92 ~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~ 133 (159)
T PF10649_consen 92 EGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPR 133 (159)
T ss_pred cCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHH
Confidence 66898887643 245454 7899999999999986543
No 214
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=61.20 E-value=1.1e+02 Score=26.70 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=24.2
Q ss_pred eEEecCCCCCCCh-HHHHHHHcCCCEEEcCCCCccc
Q 043412 263 VFVLPSRGEGWGR-PLVEAMSMGLPVIATNWSGPTE 297 (383)
Q Consensus 263 i~v~ps~~e~~~~-~~~Ea~a~G~PvI~~~~~g~~e 297 (383)
+-+...-.-|+++ ..++|+.+|+-.|-+...|+.+
T Consensus 186 i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~ 221 (266)
T cd07944 186 LGFHAHNNLQLALANTLEAIELGVEIIDATVYGMGR 221 (266)
T ss_pred EEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCCC
Confidence 4444443333333 4788999999999999988777
No 215
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=60.08 E-value=1.5e+02 Score=27.82 Aligned_cols=73 Identities=14% Similarity=0.115 Sum_probs=44.4
Q ss_pred eEEEEEeCCCCCCCchHHHHHHHHhhCCCC----CccccccccCceEEecCCC--CCCChHHHH-HHHcCCCEEEcCCCC
Q 043412 222 VVLYLLTNPYHSGRDFGNKIVNFVEDSDLE----KPDDGWAPAADVFVLPSRG--EGWGRPLVE-AMSMGLPVIATNWSG 294 (383)
Q Consensus 222 ~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~adi~v~ps~~--e~~~~~~~E-a~a~G~PvI~~~~~g 294 (383)
-++.|+... .+.-++++++++.. +++..++..+|+++..+.. .-.+...+| ++..-...+..|.+-
T Consensus 203 ~~i~IaNRT-------~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiav 275 (414)
T COG0373 203 KKITIANRT-------LERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAV 275 (414)
T ss_pred CEEEEEcCC-------HHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecC
Confidence 455665533 56666677777633 6778899999999977532 223333444 334444467778876
Q ss_pred ccccccC
Q 043412 295 PTEYLTE 301 (383)
Q Consensus 295 ~~e~v~~ 301 (383)
.+++-.+
T Consensus 276 PRdie~~ 282 (414)
T COG0373 276 PRDVEPE 282 (414)
T ss_pred CCCCCcc
Confidence 6665443
No 216
>PRK13761 hypothetical protein; Provisional
Probab=59.82 E-value=1.1e+02 Score=25.95 Aligned_cols=94 Identities=20% Similarity=0.267 Sum_probs=57.9
Q ss_pred ccCceEEecCCCCCCChHHHHHH-HcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHH
Q 043412 259 PAADVFVLPSRGEGWGRPLVEAM-SMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALM 337 (383)
Q Consensus 259 ~~adi~v~ps~~e~~~~~~~Ea~-a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i 337 (383)
-.||+++.|....- =.||+ .+|+-||+-|..+..-.-+.-+-- =++.+..++
T Consensus 149 y~ADVVLVPLEDGD----R~EaL~~mGK~VI~IDLNPLSRTar~A~it-----------------------IVDni~RA~ 201 (248)
T PRK13761 149 YSADVVLVPLEDGD----RTEALVKMGKTVIAIDLNPLSRTARTATIT-----------------------IVDNITRAV 201 (248)
T ss_pred eeccEEEecCCCCc----HHHHHHHcCCeEEEEeCCCcccccccCcee-----------------------eehhHHHHH
Confidence 57899999975321 23554 589999999987655433322111 244566666
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 043412 338 RLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIKDIL 379 (383)
Q Consensus 338 ~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~~ 379 (383)
-.+.+--...+.+.+...+.+.+.|+-+...+.-.+.+++-+
T Consensus 202 p~m~~~~~elk~~~~~el~~iv~~~dN~~~L~~al~~I~~rl 243 (248)
T PRK13761 202 PNMTEYARELKKKDREELEEIVENYDNKKNLSEALKEIRERL 243 (248)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 655554444444444555556788888888777776666543
No 217
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=59.13 E-value=46 Score=27.96 Aligned_cols=88 Identities=13% Similarity=0.060 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhC-CCC----C-----ccccccccCceEEecCC----
Q 043412 204 GWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDS-DLE----K-----PDDGWAPAADVFVLPSR---- 269 (383)
Q Consensus 204 ~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~-~~~----~-----~v~~~~~~adi~v~ps~---- 269 (383)
+.+.+.+.+..+. ..+.++.++........++...+.+..+.+ |.. . +....+..||++++|--
T Consensus 16 ~~~~l~~~l~~~~--~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~ 93 (212)
T cd03146 16 ALPAIDDLLLSLT--KARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGGGNTFN 93 (212)
T ss_pred chHHHHHHHHHhc--cCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECCchHHH
Confidence 4555555555443 245688888876554445566677777777 765 1 33567789999999851
Q ss_pred ----CC--CCChHHHHHHHcCCCEEEcCCC
Q 043412 270 ----GE--GWGRPLVEAMSMGLPVIATNWS 293 (383)
Q Consensus 270 ----~e--~~~~~~~Ea~a~G~PvI~~~~~ 293 (383)
.. ++--.+-++...|+|++.+..|
T Consensus 94 ~~~~l~~~~l~~~l~~~~~~g~~i~G~SAG 123 (212)
T cd03146 94 LLAQWREHGLDAILKAALERGVVYIGWSAG 123 (212)
T ss_pred HHHHHHHcCHHHHHHHHHHCCCEEEEECHh
Confidence 11 2222455666789999988765
No 218
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=59.10 E-value=66 Score=28.08 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=38.7
Q ss_pred chHHHHHHHHhhCCCC--------CccccccccCceEEecCCCCCCChHHHHHH-HcCCCEEEcCC
Q 043412 236 DFGNKIVNFVEDSDLE--------KPDDGWAPAADVFVLPSRGEGWGRPLVEAM-SMGLPVIATNW 292 (383)
Q Consensus 236 ~~~~~~~~~~~~~~~~--------~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~-a~G~PvI~~~~ 292 (383)
+-...+++..++.|+. +.+..+...+|++-.+|+. .....+++++ ..|+||+.+..
T Consensus 76 ~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~~d~lkI~s~~-~~n~~LL~~~a~~gkPVilk~G 140 (260)
T TIGR01361 76 EGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEYADILQIGARN-MQNFELLKEVGKQGKPVLLKRG 140 (260)
T ss_pred HHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhhCCEEEECccc-ccCHHHHHHHhcCCCcEEEeCC
Confidence 3346678888888886 3344555668988888863 3345566555 56999999986
No 219
>PRK10494 hypothetical protein; Provisional
Probab=57.66 E-value=76 Score=27.68 Aligned_cols=86 Identities=9% Similarity=0.053 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhccCCCeEEEEEeCCCCCC-CchHHHHHHHHhhCCCCCc-----------------cccccccCceEEec
Q 043412 206 DVLLKAYLEEFSKADGVVLYLLTNPYHSG-RDFGNKIVNFVEDSDLEKP-----------------DDGWAPAADVFVLP 267 (383)
Q Consensus 206 ~~ll~a~~~l~~~~~~~~l~i~G~~~~~~-~~~~~~~~~~~~~~~~~~~-----------------v~~~~~~adi~v~p 267 (383)
+.+.+++ ++.++++..++++.|+....+ ....+...+++.++|+.++ ...++....+++.+
T Consensus 107 ~Rl~~a~-~L~r~~~~~~ii~SGg~~~~~~~sEA~~~~~~l~~lGVp~~~Ii~e~~s~nT~eNa~~~~~~~~~~~iiLVT 185 (259)
T PRK10494 107 PRLTEGI-RLWRANPGAKLIFTGGAAKTNTVSTAEVGARVAQSLGVPREDIITLDLPKDTEEEAAAVKQAIGDAPFLLVT 185 (259)
T ss_pred HHHHHHH-HHHHhCCCCEEEEECCCCCCCCCCHHHHHHHHHHHcCCCHHHeeeCCCCCCHHHHHHHHHHHhCCCCEEEEC
Confidence 5666666 455667888999998753222 2344555677778888621 12344555678877
Q ss_pred CCCCCCChHHHHHHHcCCCEEEcCCC
Q 043412 268 SRGEGWGRPLVEAMSMGLPVIATNWS 293 (383)
Q Consensus 268 s~~e~~~~~~~Ea~a~G~PvI~~~~~ 293 (383)
|-+. .+.+...+-..|..++....+
T Consensus 186 sa~H-m~RA~~~f~~~Gl~v~p~Ptd 210 (259)
T PRK10494 186 SASH-LPRAMIFFQQEGLNPLPAPAN 210 (259)
T ss_pred CHHH-HHHHHHHHHHcCCceeecCCc
Confidence 7432 456777777889988876653
No 220
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=57.36 E-value=1.2e+02 Score=27.93 Aligned_cols=87 Identities=13% Similarity=0.008 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHhccCCCeEEEEEeCCCCCC---------CchHHHHHHHHhhCCCC--------CccccccccCceEEe
Q 043412 204 GWDVLLKAYLEEFSKADGVVLYLLTNPYHSG---------RDFGNKIVNFVEDSDLE--------KPDDGWAPAADVFVL 266 (383)
Q Consensus 204 ~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~---------~~~~~~~~~~~~~~~~~--------~~v~~~~~~adi~v~ 266 (383)
..+.+++.++.++.. .++++..|.-.++. .+....+.+..++.|+. ..+..+...+|++-.
T Consensus 130 ~~~~~~~~A~~lk~~--g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~vd~lkI 207 (360)
T PRK12595 130 SYEQVEAVAKALKAK--GLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAVISEIVNPADVEVALDYVDVIQI 207 (360)
T ss_pred CHHHHHHHHHHHHHc--CCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHhCCeEEE
Confidence 455677777777553 45666555332211 13346777888888886 334455566999999
Q ss_pred cCCCCCCChHHHHHHH-cCCCEEEcCCC
Q 043412 267 PSRGEGWGRPLVEAMS-MGLPVIATNWS 293 (383)
Q Consensus 267 ps~~e~~~~~~~Ea~a-~G~PvI~~~~~ 293 (383)
+|.. .....++++++ .|+||+.+...
T Consensus 208 ~s~~-~~n~~LL~~~a~~gkPVilk~G~ 234 (360)
T PRK12595 208 GARN-MQNFELLKAAGRVNKPVLLKRGL 234 (360)
T ss_pred Cccc-ccCHHHHHHHHccCCcEEEeCCC
Confidence 9863 33456666554 69999999763
No 221
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.02 E-value=1e+02 Score=25.74 Aligned_cols=93 Identities=22% Similarity=0.293 Sum_probs=55.1
Q ss_pred ccCceEEecCCCCCCChHHHHHH-HcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHH
Q 043412 259 PAADVFVLPSRGEGWGRPLVEAM-SMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALM 337 (383)
Q Consensus 259 ~~adi~v~ps~~e~~~~~~~Ea~-a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i 337 (383)
-.||+++.|....- =.||+ -+|+-||+-|.....-.-+..+-- =.+.+..++
T Consensus 152 y~ADVVLvpLEDGD----RteaLv~mGK~ViaIDLNPLSRTar~AsIt-----------------------IVDnivRA~ 204 (256)
T COG1701 152 YSADVVLVPLEDGD----RTEALVRMGKTVIAIDLNPLSRTARKASIT-----------------------IVDNIVRAV 204 (256)
T ss_pred eeccEEEEecCCCc----HHHHHHHhCCeEEEEeCCccccccccCcee-----------------------eeHHHHHHH
Confidence 47899999975321 22554 479999999987665443332111 345667777
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 043412 338 RLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIKDI 378 (383)
Q Consensus 338 ~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~ 378 (383)
..+.+--+..+..++.-.+.+.++|+-..+..+....+.+-
T Consensus 205 p~li~~~~em~~~~reel~~iv~~ydN~~~l~eal~~I~~r 245 (256)
T COG1701 205 PNLIEFVKEMKNASREELEEIVENYDNKEVLAEALKHIAER 245 (256)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 66665333333333333444667788777776666655543
No 222
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=55.86 E-value=1.3e+02 Score=25.68 Aligned_cols=104 Identities=13% Similarity=0.230 Sum_probs=59.5
Q ss_pred EEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHH-HHHHhhCCCCCccccccccCceEEecCCCC
Q 043412 193 FLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKI-VNFVEDSDLEKPDDGWAPAADVFVLPSRGE 271 (383)
Q Consensus 193 i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~adi~v~ps~~e 271 (383)
|+-.|++ |...+++.+..-+..+.++...++|+|..-.++..+.. ...+++.+. ..=+++.|.-.-
T Consensus 7 iiKlGNi----g~s~~idl~lDErAdRedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~p---------Df~i~isPN~a~ 73 (277)
T PRK00994 7 IIKLGNI----GMSPVIDLLLDERADREDIDVRVVGSGAKMGPEEVEEVVKKMLEEWKP---------DFVIVISPNPAA 73 (277)
T ss_pred EEEeccc----chHHHHHHHHHhhhcccCceEEEeccCCCCCHHHHHHHHHHHHHhhCC---------CEEEEECCCCCC
Confidence 6666776 44555555544344567999999999865333222222 222233332 223455666666
Q ss_pred CCChHHHHHHH-cCCCEEEcCC-CCcc--ccccC-CCceeeec
Q 043412 272 GWGRPLVEAMS-MGLPVIATNW-SGPT--EYLTE-ENGYPLLV 309 (383)
Q Consensus 272 ~~~~~~~Ea~a-~G~PvI~~~~-~g~~--e~v~~-~~g~~~~~ 309 (383)
+.|...-|.+. .|+|+|+-.. ++.. +-+++ +-||++-.
T Consensus 74 PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~~g~GYIivk 116 (277)
T PRK00994 74 PGPKKAREILKAAGIPCIVIGDAPGKKVKDAMEEQGLGYIIVK 116 (277)
T ss_pred CCchHHHHHHHhcCCCEEEEcCCCccchHHHHHhcCCcEEEEe
Confidence 77888888876 6899766544 4442 33333 57777654
No 223
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=54.51 E-value=1.2e+02 Score=27.80 Aligned_cols=83 Identities=13% Similarity=0.162 Sum_probs=50.2
Q ss_pred HHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCCC------------cccccc----ccCceEEecCCC-C
Q 043412 209 LKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLEK------------PDDGWA----PAADVFVLPSRG-E 271 (383)
Q Consensus 209 l~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~~~----~~adi~v~ps~~-e 271 (383)
++|+ ++.+++|+-++++.|-|-+...+........+.+.++.+ -+..++ ...|-|+.|... -
T Consensus 119 ldAl-~iA~~nP~k~vVF~avGFETTaP~~A~~i~~A~~~~~~Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHVst 197 (364)
T PRK15062 119 LDAL-KIARENPDKEVVFFAIGFETTAPATAATLLQAKAEGLKNFSVLSSHKLVPPAMRALLEDPELRIDGFIAPGHVST 197 (364)
T ss_pred HHHH-HHHHHCCCCeEEEEecCchhccHHHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHcCCCCCccEEEecCEeEE
Confidence 4455 333557888888888886655555555555555555531 011222 357889999752 3
Q ss_pred CCChHHHHHH--HcCCCEEEcCC
Q 043412 272 GWGRPLVEAM--SMGLPVIATNW 292 (383)
Q Consensus 272 ~~~~~~~Ea~--a~G~PvI~~~~ 292 (383)
-.|....|.+ -+|+|+|++..
T Consensus 198 I~G~~~y~~l~~~y~~P~VVaGF 220 (364)
T PRK15062 198 IIGTEPYEFLAEEYGIPVVVAGF 220 (364)
T ss_pred EeccchhHHHHHHcCCCeEEecc
Confidence 3455666655 46999999876
No 224
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=54.01 E-value=37 Score=25.12 Aligned_cols=69 Identities=10% Similarity=0.136 Sum_probs=47.0
Q ss_pred cCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC--Cccccccc--cCceEEecCCCCCCChHHHHHHHcCCCEEEcCC
Q 043412 218 KADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE--KPDDGWAP--AADVFVLPSRGEGWGRPLVEAMSMGLPVIATNW 292 (383)
Q Consensus 218 ~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~--~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~ 292 (383)
..++++++-+-+. ..+..+...+..++. .++..+++ ..|+++..+....-.-.+.+++..|++|++-.-
T Consensus 22 ~~~~~~v~~v~d~------~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP 94 (120)
T PF01408_consen 22 SSPDFEVVAVCDP------DPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEKP 94 (120)
T ss_dssp TTTTEEEEEEECS------SHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEESS
T ss_pred cCCCcEEEEEEeC------CHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEcC
Confidence 3577777755543 244555556666664 44556665 688888777655555678999999999998875
No 225
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=53.74 E-value=18 Score=26.18 Aligned_cols=67 Identities=12% Similarity=0.125 Sum_probs=38.9
Q ss_pred EEEEeCCCCCCCchHHHHHHHHhhCCCC--------CccccccccCceEEecCCCCCCChHHHH--HHHcCCCEEEcCC
Q 043412 224 LYLLTNPYHSGRDFGNKIVNFVEDSDLE--------KPDDGWAPAADVFVLPSRGEGWGRPLVE--AMSMGLPVIATNW 292 (383)
Q Consensus 224 l~i~G~~~~~~~~~~~~~~~~~~~~~~~--------~~v~~~~~~adi~v~ps~~e~~~~~~~E--a~a~G~PvI~~~~ 292 (383)
++++|+| ....-..+.+++.+++.|+. .++......+|+++..... .+-..-++ +-..|+||.+.+.
T Consensus 4 ll~C~~G-aSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv-~~~~~~i~~~~~~~~ipv~~I~~ 80 (99)
T cd05565 4 LVLCAGG-GTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQM-ASYYDELKKDTDRLGIKLVTTTG 80 (99)
T ss_pred EEECCCC-CCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChH-HHHHHHHHHHhhhcCCCEEEeCH
Confidence 3445555 33344457778888888885 2344566888987765421 11122222 3345889988774
No 226
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=53.43 E-value=20 Score=26.09 Aligned_cols=36 Identities=3% Similarity=-0.073 Sum_probs=22.6
Q ss_pred HHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhC
Q 043412 210 KAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDS 248 (383)
Q Consensus 210 ~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~ 248 (383)
..+.++.+.+|+.+++++|+....+ .+.+.+.++..
T Consensus 53 ~~i~~i~~~fP~~kfiLIGDsgq~D---peiY~~ia~~~ 88 (100)
T PF09949_consen 53 DNIERILRDFPERKFILIGDSGQHD---PEIYAEIARRF 88 (100)
T ss_pred HHHHHHHHHCCCCcEEEEeeCCCcC---HHHHHHHHHHC
Confidence 3444555567999999999974433 34444455544
No 227
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=52.95 E-value=1.8e+02 Score=26.51 Aligned_cols=95 Identities=13% Similarity=0.085 Sum_probs=46.9
Q ss_pred cccccCceEEecC--CCCCCChHHHHHHHcCCCEEEcCCCCccccc--cC-CCceeeecccccccccCCCCcccccCCCH
Q 043412 256 GWAPAADVFVLPS--RGEGWGRPLVEAMSMGLPVIATNWSGPTEYL--TE-ENGYPLLVGRMSEVTEGPFKGHFWAEPSV 330 (383)
Q Consensus 256 ~~~~~adi~v~ps--~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v--~~-~~g~~~~~~~~~~~~~~~~~g~~~~~~~~ 330 (383)
.+...+|+++..| ..-+.|....|.+..-.+-+.-|..-.+++= .. .+..++ |.
T Consensus 222 ~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~~~r~~iDLAvPRdId~v~~~~~v~Ly---------------------~i 280 (338)
T PRK00676 222 SFQDPYDVIFFGSSESAYAFPHLSWESLADIPDRIVFDFNVPRTFPWSETPFPHRYL---------------------DM 280 (338)
T ss_pred hcccCCCEEEEcCCcCCCCCceeeHHHHhhccCcEEEEecCCCCCccccccCCcEEE---------------------Eh
Confidence 4457889999763 2334455555554422213444544333331 11 122222 66
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 043412 331 DKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIKDILS 380 (383)
Q Consensus 331 ~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~~~ 380 (383)
+++.+.+.+ |.+.|++....+...+ +..+.++-+.|++-..
T Consensus 281 DdL~~i~~~---n~~~R~~~~~~ae~iI------~~~~~~~~~~~~~~~~ 321 (338)
T PRK00676 281 DFISEWVQK---HLQCRKEVNNKHKLSL------REAAYKQWESYEKKLS 321 (338)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHh
Confidence 677666655 3334444444444433 3456666666665443
No 228
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=52.64 E-value=66 Score=21.31 Aligned_cols=67 Identities=9% Similarity=0.337 Sum_probs=47.0
Q ss_pred CCeEEEEEeCCCCCCCchHHHHHHHHhhCCCCCccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCC
Q 043412 220 DGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLEKPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNW 292 (383)
Q Consensus 220 ~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~ 292 (383)
.+..+.+ ++ .+....+.+.++++.+|-.- ...+-..++.+|.... ........+|...|+|+|..++
T Consensus 7 ~g~~f~i-~~---~~~~~~~~l~~~i~~~GG~v-~~~~~~~~thvI~~~~-~~~~~k~~~~~~~~i~iV~~~W 73 (78)
T PF00533_consen 7 EGCTFCI-SG---FDSDEREELEQLIKKHGGTV-SNSFSKKTTHVIVGNP-NKRTKKYKAAIANGIPIVSPDW 73 (78)
T ss_dssp TTEEEEE-SS---TSSSHHHHHHHHHHHTTEEE-ESSSSTTSSEEEESSS-HCCCHHHHHHHHTTSEEEETHH
T ss_pred CCEEEEE-cc---CCCCCHHHHHHHHHHcCCEE-EeecccCcEEEEeCCC-CCccHHHHHHHHCCCeEecHHH
Confidence 4677877 32 24577888999999988631 2344567777776554 2345679999999999998754
No 229
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=51.78 E-value=89 Score=27.26 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043412 329 SVDKLRALMRLVVS--NVDEAKAKGKQAREDMIQRFSPETVAGIVTDHIK 376 (383)
Q Consensus 329 ~~~~la~~i~~ll~--~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~ 376 (383)
+...+++.|.+.|. ||+......+|+.++..+ ++..-+++.+.+.
T Consensus 103 n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~---l~~l~~~~~~~~~ 149 (264)
T cd01020 103 TMSKVANALADALVKADPDNKKYYQANAKKFVAS---LKPLAAKIAELSA 149 (264)
T ss_pred HHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 78888888888776 788777777787775443 3444444444443
No 230
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=50.49 E-value=29 Score=30.99 Aligned_cols=87 Identities=14% Similarity=0.068 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHhccCCCeEE--EEEeCCCCCCCchHHHHHHHHhhCCCC---------Cc----cccccccCceEEecC
Q 043412 204 GWDVLLKAYLEEFSKADGVVL--YLLTNPYHSGRDFGNKIVNFVEDSDLE---------KP----DDGWAPAADVFVLPS 268 (383)
Q Consensus 204 ~~~~ll~a~~~l~~~~~~~~l--~i~G~~~~~~~~~~~~~~~~~~~~~~~---------~~----v~~~~~~adi~v~ps 268 (383)
-++.-+++++.+ .|+++= ++...+........++++..++..|+. .+ +..+....|++..|.
T Consensus 144 ~v~q~i~lik~~---~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~ 220 (322)
T COG2984 144 PVAQQIELIKAL---LPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPT 220 (322)
T ss_pred hHHHHHHHHHHh---CCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEec
Confidence 355556666665 467654 344544334455668888899998886 22 235558889988886
Q ss_pred C---CCCCChHHHHHHHcCCCEEEcCCC
Q 043412 269 R---GEGWGRPLVEAMSMGLPVIATNWS 293 (383)
Q Consensus 269 ~---~e~~~~~~~Ea~a~G~PvI~~~~~ 293 (383)
. .-++...+.+|....+|+++++.+
T Consensus 221 dn~i~s~~~~l~~~a~~~kiPli~sd~~ 248 (322)
T COG2984 221 DNLIVSAIESLLQVANKAKIPLIASDTS 248 (322)
T ss_pred chHHHHHHHHHHHHHHHhCCCeecCCHH
Confidence 4 235566789999999999999874
No 231
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=49.83 E-value=2.2e+02 Score=26.59 Aligned_cols=85 Identities=13% Similarity=0.088 Sum_probs=47.4
Q ss_pred cccCHHHHHHHHHHHhcc------CCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC-----------CccccccccCce
Q 043412 201 YRKGWDVLLKAYLEEFSK------ADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE-----------KPDDGWAPAADV 263 (383)
Q Consensus 201 ~~K~~~~ll~a~~~l~~~------~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~-----------~~v~~~~~~adi 263 (383)
...|.+..++++...... .++-.+-++|.... .....+++++.+..|+. +++.. +..|.+
T Consensus 134 ~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~--~~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~-~~~A~~ 210 (406)
T cd01967 134 QSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNI--GGDAWVIKPLLEELGIRVNATFTGDGTVDELRR-AHRAKL 210 (406)
T ss_pred ccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEecccc--chhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhh-CccCCE
Confidence 345788888876544322 23456777786421 23458899999999886 22222 244444
Q ss_pred EEecCCCCCCChHHHHHHH--cCCCEEEc
Q 043412 264 FVLPSRGEGWGRPLVEAMS--MGLPVIAT 290 (383)
Q Consensus 264 ~v~ps~~e~~~~~~~Ea~a--~G~PvI~~ 290 (383)
-+..+.. ++..+.+.|. +|+|.+..
T Consensus 211 niv~~~~--~~~~~a~~L~~r~GiP~~~~ 237 (406)
T cd01967 211 NLVHCSR--SMNYLAREMEERYGIPYMEV 237 (406)
T ss_pred EEEEChH--HHHHHHHHHHHhhCCCEEEe
Confidence 3332221 2344444432 79999763
No 232
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=49.81 E-value=64 Score=20.49 Aligned_cols=64 Identities=11% Similarity=0.304 Sum_probs=42.1
Q ss_pred eEEEEEeCCCCCCCchHHHHHHHHhhCCCCCcccccc-ccCceEEecCCCCCCChHHHHHHHcCCCEEEcCC
Q 043412 222 VVLYLLTNPYHSGRDFGNKIVNFVEDSDLEKPDDGWA-PAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNW 292 (383)
Q Consensus 222 ~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~ 292 (383)
..+.+.|..+ ......+.+++...|-. +...+ ..++.+|.+..... .....|...|+|+|..++
T Consensus 2 ~~~~i~g~~~---~~~~~~l~~~i~~~Gg~--v~~~~~~~~thvI~~~~~~~--~~~~~~~~~~~~iV~~~W 66 (72)
T cd00027 2 LTFVITGDLP---SEERDELKELIEKLGGK--VTSSVSKKTTHVIVGSDAGP--KKLLKAIKLGIPIVTPEW 66 (72)
T ss_pred CEEEEEecCC---CcCHHHHHHHHHHcCCE--EeccccCCceEEEECCCCCc--hHHHHHHHcCCeEecHHH
Confidence 4567777531 35678888898888763 22222 47777777754321 227889999999998754
No 233
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=47.98 E-value=31 Score=31.64 Aligned_cols=58 Identities=12% Similarity=0.041 Sum_probs=35.6
Q ss_pred HHHHHHHcCC-CEEEcC-CCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHH
Q 043412 276 PLVEAMSMGL-PVIATN-WSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAK 350 (383)
Q Consensus 276 ~~~Ea~a~G~-PvI~~~-~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~ 350 (383)
++.+|+.+|+ ||+-.. .....+++..+.-+-++- -.++++||+.|..+.+|++.+.+.
T Consensus 246 K~~~al~~g~VPI~~G~~~~~~~~~~P~~SfI~~~d-----------------f~s~~~La~yl~~l~~n~~~Y~~y 305 (349)
T PF00852_consen 246 KFWNALLAGTVPIYWGPPRPNYEEFAPPNSFIHVDD-----------------FKSPKELADYLKYLDKNDELYNKY 305 (349)
T ss_dssp HHHHHHHTTSEEEEES---TTHHHHS-GGGSEEGGG-----------------SSSHHHHHHHHHHHHT-HHHHH--
T ss_pred HHHHHHHCCeEEEEECCEecccccCCCCCCccchhc-----------------CCCHHHHHHHHHHHhcCHHHHhhh
Confidence 7889999998 455442 345555655432222211 018999999999999999887654
No 234
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=47.57 E-value=15 Score=23.31 Aligned_cols=15 Identities=40% Similarity=0.669 Sum_probs=13.4
Q ss_pred HHHHHHHcCCCEEEc
Q 043412 276 PLVEAMSMGLPVIAT 290 (383)
Q Consensus 276 ~~~Ea~a~G~PvI~~ 290 (383)
.+.|++.+|.||++-
T Consensus 16 kI~esav~G~pVvAL 30 (58)
T PF11238_consen 16 KIAESAVMGTPVVAL 30 (58)
T ss_pred HHHHHHhcCceeEee
Confidence 689999999999874
No 235
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=47.54 E-value=39 Score=28.72 Aligned_cols=105 Identities=14% Similarity=0.230 Sum_probs=50.0
Q ss_pred EEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHH-HHHHHhhCCCCCccccccccCceEEecCCCC
Q 043412 193 FLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNK-IVNFVEDSDLEKPDDGWAPAADVFVLPSRGE 271 (383)
Q Consensus 193 i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~adi~v~ps~~e 271 (383)
|+-.|++ |...+++.+..-+..++|+...++|+|..-.++..+. .....+..+. ..=+++.|.-.-
T Consensus 6 iiKlGNi----g~s~~idl~LDErAdRedI~vrv~gsGaKm~pe~~e~~~~~~~~~~~p---------df~I~isPN~~~ 72 (276)
T PF01993_consen 6 IIKLGNI----GTSVVIDLLLDERADREDIDVRVVGSGAKMGPEDVEEVVTKMLKEWDP---------DFVIVISPNAAA 72 (276)
T ss_dssp EEEES------HHHHHTTGGGSTTS--SSEEEEEEEEET--SHHHHHHHHHHHHHHH-----------SEEEEE-S-TTS
T ss_pred EEEeccc----chHHHHHHHHHhhhccCCceEEEeccCCCCCHHHHHHHHHHHHHhhCC---------CEEEEECCCCCC
Confidence 5556655 3444555443333346799999999985422221111 1222223332 223455565555
Q ss_pred CCChHHHHHH-HcCCCEEEc-CCCCcc--cccc-CCCceeeecc
Q 043412 272 GWGRPLVEAM-SMGLPVIAT-NWSGPT--EYLT-EENGYPLLVG 310 (383)
Q Consensus 272 ~~~~~~~Ea~-a~G~PvI~~-~~~g~~--e~v~-~~~g~~~~~~ 310 (383)
+.|...-|.+ +.|+|+|.- |.++.. +-++ .+-||++-..
T Consensus 73 PGP~~ARE~l~~~~iP~IvI~D~p~~k~kd~l~~~g~GYIivk~ 116 (276)
T PF01993_consen 73 PGPTKAREMLSAKGIPCIVISDAPTKKAKDALEEEGFGYIIVKA 116 (276)
T ss_dssp HHHHHHHHHHHHSSS-EEEEEEGGGGGGHHHHHHTT-EEEEETT
T ss_pred CCcHHHHHHHHhCCCCEEEEcCCCchhhHHHHHhcCCcEEEEec
Confidence 5667788887 589996654 444332 3333 3577777543
No 236
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=47.36 E-value=68 Score=28.18 Aligned_cols=69 Identities=16% Similarity=0.109 Sum_probs=46.1
Q ss_pred CCCeEEEEEeCCCCCCCchHHHHHHHHhhCCC---CCccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCC
Q 043412 219 ADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDL---EKPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWS 293 (383)
Q Consensus 219 ~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~ 293 (383)
.+++++..+.+. ..+..++....++. .+++..+...+|+++..+-.....-...+++..|++|++...+
T Consensus 29 ~~~~el~aV~dr------~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h~e~~~~aL~aGk~Vi~~s~g 100 (271)
T PRK13302 29 LPGLTLSAVAVR------DPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVLRAIVEPVLAAGKKAIVLSVG 100 (271)
T ss_pred CCCeEEEEEECC------CHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHHHHHHHHHHHcCCcEEEecch
Confidence 367888766543 12334555555553 3556677788999988776554445568889999999987654
No 237
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=46.23 E-value=36 Score=26.23 Aligned_cols=46 Identities=15% Similarity=0.236 Sum_probs=31.3
Q ss_pred CccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCC-CCccccccC
Q 043412 252 KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNW-SGPTEYLTE 301 (383)
Q Consensus 252 ~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~-~g~~e~v~~ 301 (383)
+++..+...|.+++.-. .+ .+++-++..++|.|.... ..+.|++++
T Consensus 57 ~kiQsli~darIVISHa-G~---GSIL~~~rl~kplIv~pr~s~y~elvDd 103 (161)
T COG5017 57 EKIQSLIHDARIVISHA-GE---GSILLLLRLDKPLIVVPRSSQYQELVDD 103 (161)
T ss_pred HHHHHHhhcceEEEecc-Cc---chHHHHhhcCCcEEEEECchhHHHhhhh
Confidence 56677888888666322 22 378999999999666554 556666653
No 238
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=46.09 E-value=89 Score=27.20 Aligned_cols=128 Identities=12% Similarity=0.113 Sum_probs=64.9
Q ss_pred cEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCC--chHHHHHH----HHhhCCCCCccccccccCce
Q 043412 190 EFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGR--DFGNKIVN----FVEDSDLEKPDDGWAPAADV 263 (383)
Q Consensus 190 ~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~--~~~~~~~~----~~~~~~~~~~v~~~~~~adi 263 (383)
--+-+++|.-.+.+.+..+.++...-.+-.-..-+.+...|+.... .....+.. +..++| ||+
T Consensus 114 V~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelG-----------ADI 182 (265)
T COG1830 114 VGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELG-----------ADI 182 (265)
T ss_pred EEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhc-----------CCe
Confidence 3456777777776777777777666544433334444444433211 22223333 344444 344
Q ss_pred EEec--CCCCCCChHHHHHHHcCCCEEEcCCCCc---cccc-------cCC-CceeeecccccccccCCCCcccccCCCH
Q 043412 264 FVLP--SRGEGWGRPLVEAMSMGLPVIATNWSGP---TEYL-------TEE-NGYPLLVGRMSEVTEGPFKGHFWAEPSV 330 (383)
Q Consensus 264 ~v~p--s~~e~~~~~~~Ea~a~G~PvI~~~~~g~---~e~v-------~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~ 330 (383)
+=.. ...|.|-.++ -+||+|||.+.-+-. .+++ +.+ .|..+-. =+|...++
T Consensus 183 iK~~ytg~~e~F~~vv---~~~~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GR-------------NifQ~~~p 246 (265)
T COG1830 183 IKTKYTGDPESFRRVV---AACGVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGR-------------NIFQHEDP 246 (265)
T ss_pred EeecCCCChHHHHHHH---HhCCCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhh-------------hhhccCCh
Confidence 3221 1124443222 367899999865322 2222 222 3322211 14555589
Q ss_pred HHHHHHHHHHhcCH
Q 043412 331 DKLRALMRLVVSNV 344 (383)
Q Consensus 331 ~~la~~i~~ll~~~ 344 (383)
+.+.++|..++-+.
T Consensus 247 ~~m~~Ai~~Ivhe~ 260 (265)
T COG1830 247 EAMVKAIQAIVHEN 260 (265)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999887643
No 239
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=45.90 E-value=2.2e+02 Score=25.95 Aligned_cols=89 Identities=12% Similarity=0.002 Sum_probs=51.7
Q ss_pred cccCHHHHHHHHHHHhccCCCeEEEEEeCCCCC---------CCchHHHHHHHHhhCCCC--------CccccccccCce
Q 043412 201 YRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHS---------GRDFGNKIVNFVEDSDLE--------KPDDGWAPAADV 263 (383)
Q Consensus 201 ~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~---------~~~~~~~~~~~~~~~~~~--------~~v~~~~~~adi 263 (383)
.-...+.+++.++++++..-+ +...|--.++ ..+-...+.+..++.|+. +.+..+...+|+
T Consensus 102 siEs~e~~~~~A~~lk~~ga~--~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~vd~ 179 (335)
T PRK08673 102 SVESEEQILEIARAVKEAGAQ--ILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREETGLPIVTEVMDPRDVELVAEYVDI 179 (335)
T ss_pred ccCCHHHHHHHHHHHHHhchh--hccCcEecCCCCCcccccccHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhCCe
Confidence 345667777777777554322 2111100000 123345677778888886 334445566899
Q ss_pred EEecCCCCCCChH-HHHHHHcCCCEEEcCC
Q 043412 264 FVLPSRGEGWGRP-LVEAMSMGLPVIATNW 292 (383)
Q Consensus 264 ~v~ps~~e~~~~~-~~Ea~a~G~PvI~~~~ 292 (383)
+-.+|+.- .... +-++...|+||+.+..
T Consensus 180 lqIgAr~~-~N~~LL~~va~~~kPViLk~G 208 (335)
T PRK08673 180 LQIGARNM-QNFDLLKEVGKTNKPVLLKRG 208 (335)
T ss_pred EEECcccc-cCHHHHHHHHcCCCcEEEeCC
Confidence 98888632 2334 4455667999999976
No 240
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=45.70 E-value=79 Score=21.97 Aligned_cols=46 Identities=11% Similarity=0.170 Sum_probs=24.7
Q ss_pred EEEEeCCCCCCCchHHHHHHHHhhCCCCCcc--------ccccccCceEEecCC
Q 043412 224 LYLLTNPYHSGRDFGNKIVNFVEDSDLEKPD--------DGWAPAADVFVLPSR 269 (383)
Q Consensus 224 l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~v--------~~~~~~adi~v~ps~ 269 (383)
++++|.|.....-....+++.+.+.++...+ ......+|+++.+..
T Consensus 4 livC~~G~~tS~~l~~~i~~~~~~~~i~~~v~~~~~~~~~~~~~~~Dliist~~ 57 (89)
T cd05566 4 LVACGTGVATSTVVASKVKELLKENGIDVKVEQCKIAEVPSLLDDADLIVSTTK 57 (89)
T ss_pred EEECCCCccHHHHHHHHHHHHHHHCCCceEEEEecHHHhhcccCCCcEEEEcCC
Confidence 4455555332223345666667666664222 223467898887654
No 241
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=45.40 E-value=20 Score=31.91 Aligned_cols=143 Identities=13% Similarity=0.055 Sum_probs=65.6
Q ss_pred CCCCEEEEeChHHHHHHHhcCCCCCCeEEecCCC-cCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeecccc
Q 043412 123 NRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQPV-HVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFKWEY 201 (383)
Q Consensus 123 ~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ngi-d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~~~~ 201 (383)
.+.|.|++........+.+.... .+=|+..|+ |+....-..... .++. .+..+. .
T Consensus 58 ~~~DlIi~~gt~aa~~~~~~~~~--~iPVVf~~V~dp~~~~l~~~~~------------------~~~~-nvTGv~---~ 113 (294)
T PF04392_consen 58 QKPDLIIAIGTPAAQALAKHLKD--DIPVVFCGVSDPVGAGLVDSLD------------------RPGK-NVTGVS---E 113 (294)
T ss_dssp TS-SEEEEESHHHHHHHHHH-SS---S-EEEECES-TTTTTS-S-SS------------------S--S-SEEEEE---E
T ss_pred CCCCEEEEeCcHHHHHHHHhcCC--CcEEEEEeccChhhhhcccccc------------------CCCC-CEEEEE---C
Confidence 57999999988777777764322 144566666 322111111100 0111 122222 3
Q ss_pred ccCHHHHHHHHHHHhccCCCe-EEEEEeCCCC-CCCchHHHHHHHHhhCCCC---------Cc----cccccccCceEEe
Q 043412 202 RKGWDVLLKAYLEEFSKADGV-VLYLLTNPYH-SGRDFGNKIVNFVEDSDLE---------KP----DDGWAPAADVFVL 266 (383)
Q Consensus 202 ~K~~~~ll~a~~~l~~~~~~~-~l~i~G~~~~-~~~~~~~~~~~~~~~~~~~---------~~----v~~~~~~adi~v~ 266 (383)
..-+..-++.++++. |++ ++.++-+... ......+.+++.++.+|+. ++ +..+-...|+++.
T Consensus 114 ~~~~~~~l~l~~~l~---P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~~~~da~~~ 190 (294)
T PF04392_consen 114 RPPIEKQLELIKKLF---PDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIPVPSSEDLEQALEALAEKVDALYL 190 (294)
T ss_dssp ---HHHHHHHHHHHS---TT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHCTT-SEEEE
T ss_pred CcCHHHHHHHHHHhC---CCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhhccCCEEEE
Confidence 345566666666664 443 3323333211 1123345666777777775 11 2234467887777
Q ss_pred cCC---CCCCChHHHHHHHcCCCEEEcCC
Q 043412 267 PSR---GEGWGRPLVEAMSMGLPVIATNW 292 (383)
Q Consensus 267 ps~---~e~~~~~~~Ea~a~G~PvI~~~~ 292 (383)
+.. ...+...+..+..+++||+++..
T Consensus 191 ~~~~~~~~~~~~i~~~~~~~~iPv~~~~~ 219 (294)
T PF04392_consen 191 LPDNLVDSNFEAILQLANEAKIPVFGSSD 219 (294)
T ss_dssp -S-HHHHHTHHHHHHHCCCTT--EEESSH
T ss_pred ECCcchHhHHHHHHHHHHhcCCCEEECCH
Confidence 653 22333345566778999999763
No 242
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=43.78 E-value=1.1e+02 Score=26.49 Aligned_cols=91 Identities=10% Similarity=0.153 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCCC---------------ccccccccCceEEecC
Q 043412 204 GWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLEK---------------PDDGWAPAADVFVLPS 268 (383)
Q Consensus 204 ~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~---------------~v~~~~~~adi~v~ps 268 (383)
+-..+.+.+-++.. .++.++.++.........+.+.+.+..+.+|..+ ++...+..||++++.-
T Consensus 12 ~~~~i~~~~~~lag-~~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~G 90 (250)
T TIGR02069 12 GDREILREFVSRAG-GEDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTG 90 (250)
T ss_pred ChHHHHHHHHHHhC-CCCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeC
Confidence 33446666655543 3456777776543323344556666667777631 1235678999888763
Q ss_pred --------CCCCCCh--HHHHHHHcCCCEEEcCCCCc
Q 043412 269 --------RGEGWGR--PLVEAMSMGLPVIATNWSGP 295 (383)
Q Consensus 269 --------~~e~~~~--~~~Ea~a~G~PvI~~~~~g~ 295 (383)
.+...++ .+.++...|+|++.+..|.+
T Consensus 91 Gnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~ 127 (250)
T TIGR02069 91 GDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAA 127 (250)
T ss_pred CCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHH
Confidence 1344444 46688889999999887653
No 243
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=42.57 E-value=37 Score=21.85 Aligned_cols=51 Identities=12% Similarity=0.205 Sum_probs=34.3
Q ss_pred hHHHHHHHHhhCCCCCccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcC
Q 043412 237 FGNKIVNFVEDSDLEKPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATN 291 (383)
Q Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 291 (383)
....+.+++..+|-. -...+-.....+|.. +..+-+.-.|...|+|||..+
T Consensus 12 ~~~~l~~~i~~~Gg~-~~~~lt~~~THLI~~---~~~~~K~~~A~~~gi~vV~~~ 62 (63)
T PF12738_consen 12 ERSQLRKLIEALGGK-YSKDLTKKTTHLICS---SPEGKKYRKAKEWGIPVVSPD 62 (63)
T ss_dssp TCCHHHHHHHCTT-E-EESSSSTT-SEEEEE---S--HHHHHHHHHCTSEEEEHH
T ss_pred HHHHHHHHHHHCCCE-EeccccCCceEEEEe---CCCcHHHHHHHHCCCcEECCC
Confidence 378888999988863 122334566777763 345778999999999999764
No 244
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=41.81 E-value=1.4e+02 Score=25.06 Aligned_cols=28 Identities=11% Similarity=-0.062 Sum_probs=22.2
Q ss_pred cCHHHHHHHHHHHhccCCCeEEEEEeCC
Q 043412 203 KGWDVLLKAYLEEFSKADGVVLYLLTNP 230 (383)
Q Consensus 203 K~~~~ll~a~~~l~~~~~~~~l~i~G~~ 230 (383)
..+..|++-+..+.......++.++|.|
T Consensus 66 y~v~~l~~~~~~~l~~~~~~rV~IIGaG 93 (213)
T PRK05472 66 YNVEELLEFIEKILGLDRTWNVALVGAG 93 (213)
T ss_pred eeHHHHHHHHHHHhCCCCCcEEEEECCC
Confidence 5678888888888766667788888887
No 245
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=41.00 E-value=7.5 Score=36.90 Aligned_cols=18 Identities=22% Similarity=0.152 Sum_probs=14.9
Q ss_pred CCChhHHHHHHHHHHHhc
Q 043412 7 GGGYSSESWSYILALNEH 24 (383)
Q Consensus 7 ~~G~~~~~~~l~~~l~~~ 24 (383)
-||--.++.+++++|.+.
T Consensus 295 TGGQVvYVleqarALe~e 312 (550)
T PF00862_consen 295 TGGQVVYVLEQARALENE 312 (550)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeHHHHHHHHH
Confidence 477888999999999764
No 246
>PF03037 KMP11: Kinetoplastid membrane protein 11; InterPro: IPR004132 Kinetoplastid membrane protein 11 is a major cell surface glycoprotein of the parasite Leishmania donovani. It stimulates T-cell proliferation and may play a role in the immunlogy of the dieases Leishmaniasis.; GO: 0006952 defense response, 0008284 positive regulation of cell proliferation
Probab=40.97 E-value=79 Score=20.96 Aligned_cols=45 Identities=11% Similarity=0.179 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043412 329 SVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVTDHI 375 (383)
Q Consensus 329 ~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~ 375 (383)
..++++..+.++ |.+..+.|.++..+.++..-+-......+.+.|
T Consensus 4 tyeefaakldrl--d~ef~kkm~eqn~kffadkpdestlspemkehy 48 (90)
T PF03037_consen 4 TYEEFAAKLDRL--DAEFNKKMQEQNKKFFADKPDESTLSPEMKEHY 48 (90)
T ss_pred cHHHHHHHHHHH--HHHHHHHHHHHHHhhhcCCCcccccCHHHHHHH
Confidence 678888888887 566677787777766665544444444444443
No 247
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=40.72 E-value=2.4e+02 Score=24.31 Aligned_cols=85 Identities=12% Similarity=0.069 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCCCc-----------------cccccccCceEEecC
Q 043412 206 DVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLEKP-----------------DDGWAPAADVFVLPS 268 (383)
Q Consensus 206 ~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~-----------------v~~~~~~adi~v~ps 268 (383)
+.+..|+ +|-++.+.-++++.|+............++++...|+.++ ...++..-++.+.++
T Consensus 68 ~Rl~~A~-~LYk~gk~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~a~~i~~~~~~iIVTq 146 (239)
T PRK10834 68 YRIQGAI-NAYNSGKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQ 146 (239)
T ss_pred HHHHHHH-HHHHhCCCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEEecCCCCCHHHHHHHHHHHhCCCCEEEECC
Confidence 3444444 5556666678888887644334555667788888888622 124445555777776
Q ss_pred CCCCCChHHHHHHHcCCCEEEcCC
Q 043412 269 RGEGWGRPLVEAMSMGLPVIATNW 292 (383)
Q Consensus 269 ~~e~~~~~~~Ea~a~G~PvI~~~~ 292 (383)
.+. .+.++.-|-..|..+++...
T Consensus 147 ~fH-m~RA~~ia~~~Gi~~~~~~a 169 (239)
T PRK10834 147 RFH-CERALFIALHMGIQAQCYAV 169 (239)
T ss_pred HHH-HHHHHHHHHHcCCceEEEeC
Confidence 543 45677777888888776643
No 248
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=40.49 E-value=1.8e+02 Score=24.28 Aligned_cols=74 Identities=11% Similarity=0.096 Sum_probs=48.8
Q ss_pred CCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC------------CccccccccCceEEecCC--------CCC--CChHH
Q 043412 220 DGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE------------KPDDGWAPAADVFVLPSR--------GEG--WGRPL 277 (383)
Q Consensus 220 ~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~adi~v~ps~--------~e~--~~~~~ 277 (383)
.+.++.++.........+.+.+.+..+.+|.. +++...+..||+++++-- +.. .--.+
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i 107 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAI 107 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHH
Confidence 45677777665443345566677777777774 223456799999888741 122 22257
Q ss_pred HHHHHcCCCEEEcCCC
Q 043412 278 VEAMSMGLPVIATNWS 293 (383)
Q Consensus 278 ~Ea~a~G~PvI~~~~~ 293 (383)
.+....|+|++.+..|
T Consensus 108 ~~~~~~G~v~~G~SAG 123 (210)
T cd03129 108 LKRVARGVVIGGTSAG 123 (210)
T ss_pred HHHHHcCCeEEEcCHH
Confidence 8888889999998775
No 249
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=39.56 E-value=82 Score=25.40 Aligned_cols=59 Identities=10% Similarity=0.138 Sum_probs=35.7
Q ss_pred HHHHHHHHHhccCCCeEEEEEeCCCCCCCch-HHHHHHHHhhCCCC--------CccccccccCceEEecCCC
Q 043412 207 VLLKAYLEEFSKADGVVLYLLTNPYHSGRDF-GNKIVNFVEDSDLE--------KPDDGWAPAADVFVLPSRG 270 (383)
Q Consensus 207 ~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~-~~~~~~~~~~~~~~--------~~v~~~~~~adi~v~ps~~ 270 (383)
..++.++++.....+.+++|+|.| +. ...+.......|.. +++...+..||+++..+-.
T Consensus 30 a~v~l~~~~~~~l~gk~vlViG~G-----~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~~aDiVIsat~~ 97 (168)
T cd01080 30 GILELLKRYGIDLAGKKVVVVGRS-----NIVGKPLAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGK 97 (168)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCc-----HHHHHHHHHHHhhCCCEEEEEECCchhHHHHHhhCCEEEEcCCC
Confidence 344555554433457889999987 43 33344444444432 4566778999999877643
No 250
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.28 E-value=1.6e+02 Score=24.72 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=20.6
Q ss_pred ccCc-eEEecCCCCCCChHHHHHHHcCCCEEEcCCC
Q 043412 259 PAAD-VFVLPSRGEGWGRPLVEAMSMGLPVIATNWS 293 (383)
Q Consensus 259 ~~ad-i~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~ 293 (383)
..+| +|+.+.-.-+++..-.==-..|+|||+|+..
T Consensus 178 ~~~DaiFiSCTnlRt~eii~~lE~~~G~PVvsSN~A 213 (238)
T COG3473 178 PDADAIFISCTNLRTFEIIEKLERDTGVPVVSSNQA 213 (238)
T ss_pred CCCCeEEEEeeccccHHHHHHHHHHhCCceeeccHH
Confidence 5677 4555554334433222224689999999863
No 251
>PRK08444 hypothetical protein; Provisional
Probab=39.17 E-value=1.9e+02 Score=26.55 Aligned_cols=104 Identities=13% Similarity=0.031 Sum_probs=55.9
Q ss_pred EEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCC-----CCCchHHHHHHHHhhCCCCCccccccccCceE---
Q 043412 193 FLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYH-----SGRDFGNKIVNFVEDSDLEKPDDGWAPAADVF--- 264 (383)
Q Consensus 193 i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~adi~--- 264 (383)
|+.+|...+...++.+.++++.++++.|++++.....+.- ...-..++.-+..++.|+. .+. ...+.++
T Consensus 100 i~iv~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~-~~~--g~~aEi~~~~ 176 (353)
T PRK08444 100 VHIVSAHNPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVD-SMP--GGGAEIFDEE 176 (353)
T ss_pred EEEeccCCCCCCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcc-cCC--CCCchhcCHH
Confidence 4444556666689999999999998889888775321100 0001122222333445552 111 1233333
Q ss_pred ----EecCCC--CCCChHHHHHHHcCCCEEEcCCCCccccc
Q 043412 265 ----VLPSRG--EGWGRPLVEAMSMGLPVIATNWSGPTEYL 299 (383)
Q Consensus 265 ----v~ps~~--e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v 299 (383)
+.|+.. +-+=...-.|-..|.|+-++-.-|+.|..
T Consensus 177 vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~sg~l~G~gEt~ 217 (353)
T PRK08444 177 VRKKICKGKVSSERWLEIHKYWHKKGKMSNATMLFGHIENR 217 (353)
T ss_pred HHhhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEecCCCH
Confidence 345432 22222334478999999777666665544
No 252
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=38.83 E-value=1.8e+02 Score=27.06 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=48.3
Q ss_pred ccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCC-----CCccccccc--cCceEEecCCCCCCC
Q 043412 202 RKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDL-----EKPDDGWAP--AADVFVLPSRGEGWG 274 (383)
Q Consensus 202 ~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~--~adi~v~ps~~e~~~ 274 (383)
.++++.+.+..+++ .| +.+++.+. .....++......+. .+.+..+.+ .+|+++........-
T Consensus 36 ~~n~~~l~~q~~~f---~p--~~v~i~~~-----~~~~~l~~~l~~~~~~v~~G~~~~~~l~~~~~vD~Vv~Ai~G~aGl 105 (385)
T PRK05447 36 GKNVELLAEQAREF---RP--KYVVVADE-----EAAKELKEALAAAGIEVLAGEEGLCELAALPEADVVVAAIVGAAGL 105 (385)
T ss_pred CCCHHHHHHHHHHh---CC--CEEEEcCH-----HHHHHHHHhhccCCceEEEChhHHHHHhcCCCCCEEEEeCcCcccH
Confidence 46888888777665 23 55555543 334445443322111 123334443 468888877654333
Q ss_pred hHHHHHHHcCCCEEEcCC
Q 043412 275 RPLVEAMSMGLPVIATNW 292 (383)
Q Consensus 275 ~~~~Ea~a~G~PvI~~~~ 292 (383)
...++|+.+|++|.+.+-
T Consensus 106 ~ptl~Ai~aGK~VaLANK 123 (385)
T PRK05447 106 LPTLAAIRAGKRIALANK 123 (385)
T ss_pred HHHHHHHHCCCcEEEeCH
Confidence 578999999999999654
No 253
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=38.45 E-value=1.3e+02 Score=26.35 Aligned_cols=68 Identities=15% Similarity=0.101 Sum_probs=41.6
Q ss_pred CeEEEEEeCCCCCCCchHHHHHHHHhhCCCC--CccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCC
Q 043412 221 GVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE--KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSG 294 (383)
Q Consensus 221 ~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g 294 (383)
+++++.+.+. ..+...++.+..+.. +++..++..+|+++..+..+...-...+++..|+.+++...+.
T Consensus 26 ~~elv~v~d~------~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~s~gA 95 (265)
T PRK13304 26 NAELYAFYDR------NLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAVEEVVPKSLENGKDVIIMSVGA 95 (265)
T ss_pred CeEEEEEECC------CHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHHHHHHHHHHHcCCCEEEEchHH
Confidence 5666655543 123344444444432 4455566889999877654444445677888999999876643
No 254
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=38.20 E-value=1.1e+02 Score=27.32 Aligned_cols=18 Identities=50% Similarity=0.676 Sum_probs=14.9
Q ss_pred HHHHHHHcCC-CEEEcCCC
Q 043412 276 PLVEAMSMGL-PVIATNWS 293 (383)
Q Consensus 276 ~~~Ea~a~G~-PvI~~~~~ 293 (383)
.++|+|--|+ |++.++..
T Consensus 146 ~~~e~~k~~~~p~~~~n~~ 164 (337)
T COG2247 146 ALMELMKEGIVPVILKNTS 164 (337)
T ss_pred HHHHHHhcCcceeEecccc
Confidence 8999999997 78877764
No 255
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=37.33 E-value=1.9e+02 Score=25.05 Aligned_cols=85 Identities=13% Similarity=0.100 Sum_probs=45.5
Q ss_pred ccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC------------CccccccccCceEEecCC
Q 043412 202 RKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE------------KPDDGWAPAADVFVLPSR 269 (383)
Q Consensus 202 ~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~adi~v~ps~ 269 (383)
.|=++.|..|++-+..-...-.++++|.. ......+.+.+...|-. ..+...+..=|+++...-
T Consensus 52 ~kT~~~L~~Aa~~i~~i~~~~~Il~Vstr----~~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~~~~~f~~P~llIV~Dp 127 (249)
T PTZ00254 52 AKTWEKLKLAARVIAAIENPADVVVVSSR----PYGQRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEPRLLIVTDP 127 (249)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEEEcC----HHHHHHHHHHHHHhCCeEECCcccCCCCCCccccccCCCCEEEEeCC
Confidence 34455555555443322123456677754 23344555555554432 222333345555555432
Q ss_pred CCCCChHHHHHHHcCCCEEEcC
Q 043412 270 GEGWGRPLVEAMSMGLPVIATN 291 (383)
Q Consensus 270 ~e~~~~~~~Ea~a~G~PvI~~~ 291 (383)
. .=...+.||...|+|||+--
T Consensus 128 ~-~d~qAI~EA~~lnIPvIal~ 148 (249)
T PTZ00254 128 R-TDHQAIREASYVNIPVIALC 148 (249)
T ss_pred C-cchHHHHHHHHhCCCEEEEe
Confidence 1 12468999999999999873
No 256
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=37.25 E-value=90 Score=25.27 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=24.7
Q ss_pred CccccccccCceEEec--CCCCC---CChHHHHHHHcCCCEEEcCCC
Q 043412 252 KPDDGWAPAADVFVLP--SRGEG---WGRPLVEAMSMGLPVIATNWS 293 (383)
Q Consensus 252 ~~v~~~~~~adi~v~p--s~~e~---~~~~~~Ea~a~G~PvI~~~~~ 293 (383)
..+..+++.||++++. ...++ ++-..++.|--|.-+|-+.-|
T Consensus 83 ~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG 129 (178)
T PF02826_consen 83 VSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARG 129 (178)
T ss_dssp SSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSG
T ss_pred eehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccch
Confidence 4677889999987753 33333 344566666666655554433
No 257
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=37.13 E-value=35 Score=25.33 Aligned_cols=71 Identities=13% Similarity=0.061 Sum_probs=41.8
Q ss_pred CeEEEEEeCCCCCCCchHHHHHHHHhhCCCCCccccccc--cCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCC
Q 043412 221 GVVLYLLTNPYHSGRDFGNKIVNFVEDSDLEKPDDGWAP--AADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSG 294 (383)
Q Consensus 221 ~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g 294 (383)
++++..+-+.. ..................++..++. ..|++|=.+..+...--+.+++..|+.||+.+.+.
T Consensus 21 ~~~v~~v~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~L~~G~~VVt~nk~a 93 (117)
T PF03447_consen 21 DLEVVGVADRS---MLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVAEYYEKALERGKHVVTANKGA 93 (117)
T ss_dssp EEEEEEEEESS---EEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHHHHHHHHHHTTCEEEES-HHH
T ss_pred CEEEEEEEECC---chhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHHHHHHHHHHCCCeEEEECHHH
Confidence 56665555431 0111223333334444466666666 89999977655555556789999999999998754
No 258
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=36.84 E-value=2.6e+02 Score=26.28 Aligned_cols=43 Identities=21% Similarity=0.180 Sum_probs=31.7
Q ss_pred ccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCcccccc
Q 043412 257 WAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLT 300 (383)
Q Consensus 257 ~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~ 300 (383)
.+..+|+|+-.|....|---+++.|+.- |+|-.-....+|+..
T Consensus 266 ~~~~adv~iG~S~~G~~t~e~V~~Ma~~-PiIfalaNP~pEi~P 308 (432)
T COG0281 266 ALAGADVLIGVSGVGAFTEEMVKEMAKH-PIIFALANPTPEITP 308 (432)
T ss_pred cccCCCEEEEcCCCCCcCHHHHHHhccC-CEEeecCCCCccCCH
Confidence 4568999999998766667788888888 877665544466554
No 259
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=36.10 E-value=2.8e+02 Score=26.31 Aligned_cols=32 Identities=6% Similarity=-0.098 Sum_probs=25.0
Q ss_pred cccCHHHHHHHH-HHHhccCCCeEEEEEeCCCC
Q 043412 201 YRKGWDVLLKAY-LEEFSKADGVVLYLLTNPYH 232 (383)
Q Consensus 201 ~~K~~~~ll~a~-~~l~~~~~~~~l~i~G~~~~ 232 (383)
...|-+.++.++ ..|+++.|++.+.+....+.
T Consensus 12 ~N~GdeAil~~ii~~l~~~~p~~~i~v~S~~P~ 44 (426)
T PRK10017 12 GNRGDSAILRGLLDAINILNPHAEVDVMSRYPV 44 (426)
T ss_pred CCccHHHHHHHHHHHHHhhCCCCeEEEEecCcc
Confidence 467877777764 77778899999999987655
No 260
>COG0409 HypD Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=35.88 E-value=1.7e+02 Score=26.41 Aligned_cols=84 Identities=10% Similarity=0.164 Sum_probs=47.8
Q ss_pred HHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC------------Cccccccc---cCceEEecCC-CCC
Q 043412 209 LKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE------------KPDDGWAP---AADVFVLPSR-GEG 272 (383)
Q Consensus 209 l~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~---~adi~v~ps~-~e~ 272 (383)
.+++ ++.++.|+-.+++.+-|-+...+........+...++. .-+..++. .-|.|+.|.. .--
T Consensus 121 ~dal-~iA~enpdk~VVffaiGFETT~P~TA~~l~~~~~e~i~Nf~~ls~H~~~pPa~e~Ll~~~~~idafi~PGHVStI 199 (364)
T COG0409 121 MDAL-KIAKENPDKKVVFFAIGFETTTPTTACMLLSAKGEGIENFFVLSNHRLLPPAVEALLESEVLIDAFLAPGHVSTI 199 (364)
T ss_pred HHHH-HHHhhCCCCceEEEeCccccCCCchHHHHHhccccccceEEEEEeceecCHHHHHHHhccccccceeccceeEEE
Confidence 3444 33345678778777777554444333332223333332 11223333 4567888865 334
Q ss_pred CChHHHHHHHc--CCCEEEcCCC
Q 043412 273 WGRPLVEAMSM--GLPVIATNWS 293 (383)
Q Consensus 273 ~~~~~~Ea~a~--G~PvI~~~~~ 293 (383)
.|....|.++. ++|+|++...
T Consensus 200 iG~kpY~~la~ky~~P~VVaGFE 222 (364)
T COG0409 200 IGTKPYEFLAEKYKFPIVVAGFE 222 (364)
T ss_pred ecccccHHHHHhcCCCeEEecCC
Confidence 57788888887 7999998763
No 261
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=34.96 E-value=10 Score=33.25 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=21.1
Q ss_pred cCCCCEEEEeChHHHHHHHhcCCCC
Q 043412 122 CNRMDFVWVPTDFHVSTFIRSGVDP 146 (383)
Q Consensus 122 ~~~ad~vi~~s~~~~~~~~~~~~~~ 146 (383)
+..||.|++.++..+++-.+.|.++
T Consensus 243 Y~~Ad~I~~l~~~n~~~q~~~Ga~~ 267 (268)
T PF11997_consen 243 YRAADRITPLYEYNREWQIELGADP 267 (268)
T ss_pred HHhhCeecccchhhHHHHHHhCCCC
Confidence 5899999999998887777788765
No 262
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=34.04 E-value=2.8e+02 Score=23.09 Aligned_cols=84 Identities=15% Similarity=0.075 Sum_probs=45.1
Q ss_pred cCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC------------CccccccccCceEEecCCC
Q 043412 203 KGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE------------KPDDGWAPAADVFVLPSRG 270 (383)
Q Consensus 203 K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~adi~v~ps~~ 270 (383)
|=+..+.+|+.-+..-. .-+++++|.. ......+++.++..|-. .....-+..=|+++...-.
T Consensus 44 kT~~~L~~A~~~i~~i~-~~~ILfVgtk----~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~dp~ 118 (196)
T TIGR01012 44 KTDERLRVAAKFLVRIE-PEDILVVSAR----IYGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVTDPR 118 (196)
T ss_pred HHHHHHHHHHHHHHHhh-CCeEEEEecC----HHHHHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCCEEEEECCc
Confidence 44444555554333323 5578888865 23344455555554432 1111123444555544321
Q ss_pred CCCChHHHHHHHcCCCEEEcCC
Q 043412 271 EGWGRPLVEAMSMGLPVIATNW 292 (383)
Q Consensus 271 e~~~~~~~Ea~a~G~PvI~~~~ 292 (383)
.-...+.||...|+|+|+--.
T Consensus 119 -~~~~Av~EA~~l~IP~Iai~D 139 (196)
T TIGR01012 119 -ADHQALKEASEVGIPIVALCD 139 (196)
T ss_pred -cccHHHHHHHHcCCCEEEEee
Confidence 124689999999999998733
No 263
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=34.01 E-value=27 Score=24.54 Aligned_cols=24 Identities=21% Similarity=-0.000 Sum_probs=18.2
Q ss_pred HHHHHHhhhcCCCccEEEecCCCC
Q 043412 56 LAVELYNTECRTNETVVICHSEPG 79 (383)
Q Consensus 56 ~~~~l~~~~~~~~pDiV~~~~~~~ 79 (383)
.+.-+..++.+++.||||.|+..+
T Consensus 38 ~~pl~R~IlirE~I~IVHgH~a~S 61 (90)
T PF08288_consen 38 SFPLLRNILIRERIDIVHGHQAFS 61 (90)
T ss_pred hhHHHHHHHHHcCeeEEEeehhhh
Confidence 344466678899999999997644
No 264
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=33.65 E-value=43 Score=24.01 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=37.6
Q ss_pred EEEEeCCCCCCCchHHHHHHHHhhCCCCC--------ccccccccCceEEecCCCCCCChHHHH--HHHcCCCEEEcCCC
Q 043412 224 LYLLTNPYHSGRDFGNKIVNFVEDSDLEK--------PDDGWAPAADVFVLPSRGEGWGRPLVE--AMSMGLPVIATNWS 293 (383)
Q Consensus 224 l~i~G~~~~~~~~~~~~~~~~~~~~~~~~--------~v~~~~~~adi~v~ps~~e~~~~~~~E--a~a~G~PvI~~~~~ 293 (383)
++++|.|-... -....+++.+++.|+.- ++......+|+++...... +-..-++ +.-.++||..-+..
T Consensus 3 l~~Cg~G~sTS-~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~-~~~~~i~~~~~~~~~pv~~I~~~ 80 (96)
T cd05564 3 LLVCSAGMSTS-ILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVR-YMLDEVKKKAAEYGIPVAVIDMM 80 (96)
T ss_pred EEEcCCCchHH-HHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHH-HHHHHHHHHhccCCCcEEEcChH
Confidence 45555553222 33456667777777652 2233457789877664321 1223333 34578999888753
No 265
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=33.06 E-value=2.1e+02 Score=26.69 Aligned_cols=69 Identities=13% Similarity=0.210 Sum_probs=39.8
Q ss_pred CeEEEEEeCCCCCCCchHHHHHHHHhhCCCC-----------------CccccccccCceEE--ecCCCC----CC---C
Q 043412 221 GVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE-----------------KPDDGWAPAADVFV--LPSRGE----GW---G 274 (383)
Q Consensus 221 ~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~-----------------~~v~~~~~~adi~v--~ps~~e----~~---~ 274 (383)
+-++-|+|-| .....+.+.++.+|.+ ..+..+++.||+++ .|...+ +. +
T Consensus 116 gktvGIIG~G-----~IG~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~ 190 (378)
T PRK15438 116 DRTVGIVGVG-----NVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLAD 190 (378)
T ss_pred CCEEEEECcC-----HHHHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccC
Confidence 4566777766 4455555555555443 23456667888877 554332 33 3
Q ss_pred hHHHHHHHcCCCEEEcCCCC
Q 043412 275 RPLVEAMSMGLPVIATNWSG 294 (383)
Q Consensus 275 ~~~~Ea~a~G~PvI~~~~~g 294 (383)
-..++.|--|.-+|-+.-|+
T Consensus 191 ~~~l~~mk~gailIN~aRG~ 210 (378)
T PRK15438 191 EKLIRSLKPGAILINACRGA 210 (378)
T ss_pred HHHHhcCCCCcEEEECCCch
Confidence 35666666666666665554
No 266
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=33.03 E-value=1.1e+02 Score=26.63 Aligned_cols=42 Identities=19% Similarity=0.107 Sum_probs=30.6
Q ss_pred CccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCC
Q 043412 252 KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWS 293 (383)
Q Consensus 252 ~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~ 293 (383)
+++..++..+|+++..+..+...-.+..|+..|+|+|+...+
T Consensus 52 ~dl~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvigttG 93 (257)
T PRK00048 52 DDLEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTTG 93 (257)
T ss_pred CCHHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 455566677999996665555455678899999999987544
No 267
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=32.56 E-value=2.9e+02 Score=22.94 Aligned_cols=98 Identities=9% Similarity=0.064 Sum_probs=54.8
Q ss_pred CCCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC----CccccccccCc
Q 043412 187 SSKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE----KPDDGWAPAAD 262 (383)
Q Consensus 187 ~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~ad 262 (383)
.+.+.+++..|.+ ....++.|.+.. .++.++.. ...+.+.+++....+. .--...+..+|
T Consensus 9 ~~k~vLVIGgG~v--------a~~ka~~Ll~~g--a~V~VIs~------~~~~~l~~l~~~~~i~~~~~~~~~~~l~~ad 72 (202)
T PRK06718 9 SNKRVVIVGGGKV--------AGRRAITLLKYG--AHIVVISP------ELTENLVKLVEEGKIRWKQKEFEPSDIVDAF 72 (202)
T ss_pred CCCEEEEECCCHH--------HHHHHHHHHHCC--CeEEEEcC------CCCHHHHHHHhCCCEEEEecCCChhhcCCce
Confidence 3445555555543 233444444443 45666642 2334555555442221 11123457889
Q ss_pred eEEecCCCCCCChHHHHHHHcCCCEEEcCCCCcccccc
Q 043412 263 VFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLT 300 (383)
Q Consensus 263 i~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~ 300 (383)
+++..+..+.....+.+....+++|-+.+.+...+++-
T Consensus 73 lViaaT~d~elN~~i~~~a~~~~lvn~~d~~~~~~f~~ 110 (202)
T PRK06718 73 LVIAATNDPRVNEQVKEDLPENALFNVITDAESGNVVF 110 (202)
T ss_pred EEEEcCCCHHHHHHHHHHHHhCCcEEECCCCccCeEEE
Confidence 98888766555666666667899988888766555553
No 268
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=32.19 E-value=2.7e+02 Score=22.44 Aligned_cols=87 Identities=20% Similarity=0.251 Sum_probs=51.5
Q ss_pred ccCceEEecCCCCCCChHHHHHH-HcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHH
Q 043412 259 PAADVFVLPSRGEGWGRPLVEAM-SMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALM 337 (383)
Q Consensus 259 ~~adi~v~ps~~e~~~~~~~Ea~-a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i 337 (383)
-.||+++.|....- =.||+ .+|+-||+-|..+..-.-+.-+-- =.+.+..++
T Consensus 88 y~ADVVLVPLEDGD----R~EAL~~mGK~VIaIDLNPLSRTar~Atit-----------------------IVDni~RA~ 140 (178)
T PF02006_consen 88 YSADVVLVPLEDGD----RTEALVKMGKTVIAIDLNPLSRTARTATIT-----------------------IVDNITRAI 140 (178)
T ss_pred eeccEEEeccCCCc----HHHHHHHcCCeEEEEeCCCcccccccCcee-----------------------eehhHHHHH
Confidence 57899999975321 23554 589999999987655433322111 245566666
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043412 338 RLVVSNVDEAKAKGKQAREDMIQRFSPETVAGIVT 372 (383)
Q Consensus 338 ~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~ 372 (383)
-.+.+--...+.+.+...+.+...|+-+...+.-.
T Consensus 141 p~~~~~~~~lk~~~~~el~~iv~~~dN~~~L~~al 175 (178)
T PF02006_consen 141 PNMIEFARELKKKDREELEEIVKNYDNKKNLSEAL 175 (178)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCcHHHHHHHH
Confidence 66555444444444444555667787776655443
No 269
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=31.87 E-value=19 Score=27.30 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=29.6
Q ss_pred CccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCc
Q 043412 252 KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGP 295 (383)
Q Consensus 252 ~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~ 295 (383)
+++..++..+|+++--|..+..--.+-.++.+|+|+|..-.|..
T Consensus 59 ~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~ 102 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFS 102 (124)
T ss_dssp S-HHHHTTH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSH
T ss_pred hhHHHhcccCCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCC
Confidence 66778888899999777655554567778889999998776643
No 270
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=31.48 E-value=3.1e+02 Score=22.93 Aligned_cols=97 Identities=22% Similarity=0.175 Sum_probs=56.1
Q ss_pred cEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC--Ccccc---ccccCceE
Q 043412 190 EFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE--KPDDG---WAPAADVF 264 (383)
Q Consensus 190 ~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~--~~v~~---~~~~adi~ 264 (383)
..+++.+|. -..|-|-++ +++.|....-++.++..|+... ...+......+.++.. -++.. ....+|++
T Consensus 50 ~~v~vlcG~--GnNGGDG~V-aAR~L~~~G~~V~v~~~~~~~~---~~~~~a~~~~~~l~~~~~v~~~~~~~~~~~~dvI 123 (203)
T COG0062 50 RRVLVLCGP--GNNGGDGLV-AARHLKAAGYAVTVLLLGDPKK---LKTEAARANLKSLGIGGVVKIKELEDEPESADVI 123 (203)
T ss_pred CEEEEEECC--CCccHHHHH-HHHHHHhCCCceEEEEeCCCCC---ccHHHHHHHHHhhcCCcceeecccccccccCCEE
Confidence 445556663 345667766 6667776767889998886522 2223333333333321 11111 46788998
Q ss_pred EecCCC--------CCCChHHHHHH-HcCCCEEEcCCC
Q 043412 265 VLPSRG--------EGWGRPLVEAM-SMGLPVIATNWS 293 (383)
Q Consensus 265 v~ps~~--------e~~~~~~~Ea~-a~G~PvI~~~~~ 293 (383)
|-.-+. |.+. .++|.+ ..|+|||+-|.+
T Consensus 124 VDalfG~G~~g~lrep~a-~~Ie~iN~~~~pivAVDiP 160 (203)
T COG0062 124 VDALFGTGLSGPLREPFA-SLIEAINASGKPIVAVDIP 160 (203)
T ss_pred EEeceecCCCCCCccHHH-HHHHHHHhcCCceEEEeCC
Confidence 866543 2332 345554 499999999984
No 271
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=30.59 E-value=61 Score=26.74 Aligned_cols=69 Identities=17% Similarity=0.153 Sum_probs=40.4
Q ss_pred CChhHHHHHHHHHHHhcccCCCceeeeecCCCcccchh--hcCCChhh--h-------hHHHHHHhhhcCCCccEEEecC
Q 043412 8 GGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQSLQF--WEGLPHHM--R-------NLAVELYNTECRTNETVVICHS 76 (383)
Q Consensus 8 ~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~-------~~~~~l~~~~~~~~pDiV~~~~ 76 (383)
+|-++....+.+.+.+.+....+.+.+..+.+...... -.++|... . ..-..+.+.+++.+||++++..
T Consensus 8 sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~~ 87 (190)
T TIGR00639 8 SGNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEVDLVVLAG 87 (190)
T ss_pred cCCChhHHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEEeC
Confidence 35556677888888876654455555565544432221 12344321 0 1123567788899999999974
No 272
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=30.15 E-value=3.3e+02 Score=24.11 Aligned_cols=56 Identities=18% Similarity=0.108 Sum_probs=36.7
Q ss_pred hHHHHHHHHhhCC--CCCccccccc--cCceEEecCC-CCCCChHHHHHHH--cCCCEEEcCC
Q 043412 237 FGNKIVNFVEDSD--LEKPDDGWAP--AADVFVLPSR-GEGWGRPLVEAMS--MGLPVIATNW 292 (383)
Q Consensus 237 ~~~~~~~~~~~~~--~~~~v~~~~~--~adi~v~ps~-~e~~~~~~~Ea~a--~G~PvI~~~~ 292 (383)
..+.-..+++..+ ....+...++ .+|+++-.|. ...|.--+++.|+ +..|+|-.-.
T Consensus 78 l~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS 140 (279)
T cd05312 78 LTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALS 140 (279)
T ss_pred chHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECC
Confidence 3344445555443 3345667777 8899998885 4567778888888 4677776533
No 273
>PF14386 DUF4417: Domain of unknown function (DUF4417)
Probab=30.06 E-value=1.1e+02 Score=25.53 Aligned_cols=40 Identities=5% Similarity=-0.024 Sum_probs=28.5
Q ss_pred EEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCC
Q 043412 191 FVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNP 230 (383)
Q Consensus 191 ~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~ 230 (383)
..+.+.|........+.+++.+.++.++..+.++++.|+.
T Consensus 138 vaist~g~~~~~~~~~~f~~Gl~em~~rl~P~~ilvyG~~ 177 (200)
T PF14386_consen 138 VAISTNGCINNKEDKKLFLDGLREMLKRLRPKHILVYGGM 177 (200)
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHhccCCCeEEEECCc
Confidence 3444555444444567788888888888888899999854
No 274
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=29.68 E-value=2.1e+02 Score=26.06 Aligned_cols=57 Identities=23% Similarity=0.342 Sum_probs=32.7
Q ss_pred chHHHHHHHHhhCCCC--------Ccccccccc-CceEEecCCCCCCChHHHHHHH-cCCCEEEcCCC
Q 043412 236 DFGNKIVNFVEDSDLE--------KPDDGWAPA-ADVFVLPSRGEGWGRPLVEAMS-MGLPVIATNWS 293 (383)
Q Consensus 236 ~~~~~~~~~~~~~~~~--------~~v~~~~~~-adi~v~ps~~e~~~~~~~Ea~a-~G~PvI~~~~~ 293 (383)
+....+.+.+++.|+. +.+..+... ++++=.+|. +-....++++++ .|+|||.|...
T Consensus 76 e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~-~~~n~pLL~~~A~~gkPvilStGm 142 (329)
T TIGR03569 76 EDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSG-EITNAPLLKKIARFGKPVILSTGM 142 (329)
T ss_pred HHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcc-cccCHHHHHHHHhcCCcEEEECCC
Confidence 3455666666666664 112222222 466656664 444566777655 69999998754
No 275
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=29.49 E-value=65 Score=23.06 Aligned_cols=68 Identities=21% Similarity=0.181 Sum_probs=36.1
Q ss_pred EEEEeCCCCCCCchHHHHHHHHhhCCCCC--------ccccccccCceEEecCCCCCCChHHHHHH--HcCCCEEEcCCC
Q 043412 224 LYLLTNPYHSGRDFGNKIVNFVEDSDLEK--------PDDGWAPAADVFVLPSRGEGWGRPLVEAM--SMGLPVIATNWS 293 (383)
Q Consensus 224 l~i~G~~~~~~~~~~~~~~~~~~~~~~~~--------~v~~~~~~adi~v~ps~~e~~~~~~~Ea~--a~G~PvI~~~~~ 293 (383)
++++|.|-. ..-....+++.+++.|+.- ++......+|+++...... +-..-++.. ..|+||.+.+..
T Consensus 7 Ll~C~~G~s-SS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~-~~~~~i~~~~~~~~ipv~~I~~~ 84 (95)
T TIGR00853 7 LLLCAAGMS-TSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVA-YMLPDLKKETDKKGIPVEVINGA 84 (95)
T ss_pred EEECCCchh-HHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHH-HHHHHHHHHhhhcCCCEEEeChh
Confidence 344444422 2223456666677766652 2233456789888665321 122334443 347899987753
No 276
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=29.35 E-value=3.3e+02 Score=22.62 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhccCCCe-EEEEEeCCCCCCCchHHHHHHHHhhCCCCCcccccc----------ccCceEEecCCCCCC
Q 043412 205 WDVLLKAYLEEFSKADGV-VLYLLTNPYHSGRDFGNKIVNFVEDSDLEKPDDGWA----------PAADVFVLPSRGEGW 273 (383)
Q Consensus 205 ~~~ll~a~~~l~~~~~~~-~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------~~adi~v~ps~~e~~ 273 (383)
...+++.+..+. +. -+++.|+| ..-+.++....+.|+.+.....+ ..+| ..+... ..
T Consensus 12 ~~~~~~~l~~~~----~~~v~iV~GGG-----~~A~~~r~~~~~~g~~~~~ad~mgilat~~na~~l~~--~~~~~~-~~ 79 (203)
T cd04240 12 AVRLLRWLKTLS----GGGVVIVPGGG-----PFADVVRRYQERKGLSDAAAHWMAILAMEQYGYLLAD--LEPRLV-AR 79 (203)
T ss_pred HHHHHHHHHhcc----CCCEEEEcCCc-----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhc--cCCccc-cC
Confidence 556666665542 33 44566666 66677777777888875432221 0112 112222 11
Q ss_pred -ChHHHHHHHcCCCEEEcCC
Q 043412 274 -GRPLVEAMSMGLPVIATNW 292 (383)
Q Consensus 274 -~~~~~Ea~a~G~PvI~~~~ 292 (383)
...+.+++.+|...|..+.
T Consensus 80 ~~~~~~~~~~~g~ipV~~P~ 99 (203)
T cd04240 80 TLAELTDVLERGKIAILLPY 99 (203)
T ss_pred CHHHHHHHHHCCCcEEEeCc
Confidence 1467788888764444444
No 277
>COG1628 Endonuclease V homolog [Replication, recombination, and repair]
Probab=29.22 E-value=1.5e+02 Score=24.23 Aligned_cols=79 Identities=23% Similarity=0.330 Sum_probs=56.0
Q ss_pred chHHHHHHHHhhCCCCCccccccccCceEEecCC-CCCCChHHHHHHH--cCCCEEEcCCCCccccccCCCceeeecccc
Q 043412 236 DFGNKIVNFVEDSDLEKPDDGWAPAADVFVLPSR-GEGWGRPLVEAMS--MGLPVIATNWSGPTEYLTEENGYPLLVGRM 312 (383)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~v~~~~~~adi~v~ps~-~e~~~~~~~Ea~a--~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~ 312 (383)
+..+.+.+++...+.. ..+++++... +.||..+-.|++. .|+|||+--.-
T Consensus 53 D~T~~i~~~v~~~~~~--------~~rvVlLdGIt~aGFNivDi~~l~~~tg~PVi~V~~k------------------- 105 (185)
T COG1628 53 DVTDAISDMVNRSKRR--------DLRVVLLDGITFAGFNIVDIEALYKETGLPVIVVYRK------------------- 105 (185)
T ss_pred hHHHHHHHHHHHhhcc--------cccEEEECCeeeccceEecHHHHHHhhCCcEEEEEec-------------------
Confidence 3455666666665542 2466666654 6789999999987 79999986531
Q ss_pred cccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 043412 313 SEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAKGKQAR 355 (383)
Q Consensus 313 ~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~~~~a~ 355 (383)
.++.+.+-.++++.+.|.+.+.+..+.+-
T Consensus 106 --------------~P~~e~i~~Al~k~f~d~e~R~rii~~~g 134 (185)
T COG1628 106 --------------KPDIERIESALRKHFDDAEERIRIIESAG 134 (185)
T ss_pred --------------CCCHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 11889999999999999988776655543
No 278
>PF13169 Poxvirus_B22R_N: Poxvirus B22R protein N-terminal
Probab=28.92 E-value=2.2e+02 Score=20.35 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=21.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHh
Q 043412 356 EDMIQRFSPETVAGIVTDHIKDILS 380 (383)
Q Consensus 356 ~~~~~~~s~~~~~~~~~~~~~~~~~ 380 (383)
..+.+.|+|+.+.+.+.+.|.+.+.
T Consensus 44 ~~l~~~fnWt~I~~~V~~~F~~~C~ 68 (92)
T PF13169_consen 44 ERLESKFNWTSIRESVKDEFIKKCN 68 (92)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHhc
Confidence 3467899999999999999987764
No 279
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=28.64 E-value=2e+02 Score=25.00 Aligned_cols=144 Identities=17% Similarity=0.074 Sum_probs=76.3
Q ss_pred CHHHHHhcCCCCEEEEeChHHHHHHHh-cCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEE
Q 043412 115 SPEHVKRCNRMDFVWVPTDFHVSTFIR-SGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVF 193 (383)
Q Consensus 115 ~~~~~~~~~~ad~vi~~s~~~~~~~~~-~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 193 (383)
...+...+++||.|+.-+-...-..+. +|.+ .+..+ +|+|+-.---.... .++..++
T Consensus 55 d~e~~~~i~~A~li~pDG~gvV~~ar~~~g~~-~~~rv--~G~Dl~~~Ll~~a~-------------------~~~~~vf 112 (253)
T COG1922 55 DPEFREILNQADLILPDGIGVVRAARRLLGQP-LPERV--AGTDLVEALLKRAA-------------------EEGKRVF 112 (253)
T ss_pred CHHHHHHHhhcCEEccCchhHHHHHHHHhCcc-CcccC--ChHHHHHHHHHHhC-------------------ccCceEE
Confidence 345666778899999988888777755 5543 22122 46654210000010 1224455
Q ss_pred EEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCCCccccccccCceEEecC---CC
Q 043412 194 LSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLEKPDDGWAPAADVFVLPS---RG 270 (383)
Q Consensus 194 ~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~adi~v~ps---~~ 270 (383)
++.| -.+.+-+|...+.+++|...++-.-+|+.+..+. +.+.+.+... .+|+++.-- +.
T Consensus 113 llGg------kp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~-~~i~~~I~~s-----------~pdil~VgmG~P~Q 174 (253)
T COG1922 113 LLGG------KPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEE-EAIVERIAAS-----------GPDILLVGMGVPRQ 174 (253)
T ss_pred EecC------CHHHHHHHHHHHHHHCCCceEEEecCCCCChhhH-HHHHHHHHhc-----------CCCEEEEeCCCchh
Confidence 5544 2356677888888899988877776665533332 3444444333 457666432 11
Q ss_pred CCCChHHHHHHHcCCCEEEcCCCCccccccC
Q 043412 271 EGWGRPLVEAMSMGLPVIATNWSGPTEYLTE 301 (383)
Q Consensus 271 e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~ 301 (383)
|-| +......=-+-|...+||.-|++..
T Consensus 175 E~w---i~~~~~~~~~~v~igVGg~fDv~sG 202 (253)
T COG1922 175 EIW---IARNRQQLPVAVAIGVGGSFDVFSG 202 (253)
T ss_pred HHH---HHHhHHhcCCceEEeccceEEEecC
Confidence 211 2222222223455556777777654
No 280
>TIGR02536 eut_hyp ethanolamine utilization protein. This family of proteins is found in operons for the polyhedral organelle-based degradation of ethanolamine. This family is not found in proteobacterial species which otherwise have the same suite of genes in the eut operon. Proteobacteria have two genes that are not found in non-proteobacteria which may complement this genes function, a phosphotransacetylase (pfam01515) and the EutJ protein (TIGR02529) of unknown function.
Probab=28.56 E-value=3.6e+02 Score=22.67 Aligned_cols=52 Identities=12% Similarity=0.139 Sum_probs=34.2
Q ss_pred HHHHHhhCCCCCccccccccCceEEecCCC--------CCCC-----hHHHHHHHcCCCEEEcCCC
Q 043412 241 IVNFVEDSDLEKPDDGWAPAADVFVLPSRG--------EGWG-----RPLVEAMSMGLPVIATNWS 293 (383)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~adi~v~ps~~--------e~~~-----~~~~Ea~a~G~PvI~~~~~ 293 (383)
-+++.+.+.+. -+......||+++.|... -|.+ ..+++++..|+||++...+
T Consensus 35 ~e~~~~~~~i~-~~~~~~~~~dillv~~Lt~n~lskIAlGi~d~~~~~~I~~~LL~GK~V~v~~eg 99 (207)
T TIGR02536 35 PEEMLKEFDVS-WVTSEQKLADILLVSRLSIKELNNISHGQETNEKEKFIIAFLLEGKPIYILKPG 99 (207)
T ss_pred HHHHHhhccee-ecchhhhcCCEEEEccCCHHHHHHHHccCCCCHHHHHHHHHHHCCCeEEEEecc
Confidence 34444555442 122355799999999753 2333 4689999999999998753
No 281
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=28.52 E-value=2.9e+02 Score=23.51 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=25.9
Q ss_pred ceEEecCCCCCCChHHHHHHHcCCCEEEcCC-CCccccc
Q 043412 262 DVFVLPSRGEGWGRPLVEAMSMGLPVIATNW-SGPTEYL 299 (383)
Q Consensus 262 di~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~-~g~~e~v 299 (383)
|++|.-...|.. .+++||.-+++|+|+--. ...++++
T Consensus 175 D~vvvln~~e~~-sAilEA~K~~IPTIgIVDtN~~P~li 212 (251)
T KOG0832|consen 175 DLVVVLNPEENH-SAILEAAKMAIPTIGIVDTNCNPELI 212 (251)
T ss_pred ceeEecCccccc-HHHHHHHHhCCCeEEEecCCCCccce
Confidence 877776665653 589999999999998633 3334443
No 282
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=28.49 E-value=3.7e+02 Score=22.87 Aligned_cols=74 Identities=12% Similarity=0.185 Sum_probs=42.0
Q ss_pred CeEEEEEeCCCCCCCchHHHHHHHHhhCCCC---Cc-cccccccCceEEecCCCCCCCh-HHHHHHHcCCCEEEcCCCCc
Q 043412 221 GVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE---KP-DDGWAPAADVFVLPSRGEGWGR-PLVEAMSMGLPVIATNWSGP 295 (383)
Q Consensus 221 ~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~---~~-v~~~~~~adi~v~ps~~e~~~~-~~~Ea~a~G~PvI~~~~~g~ 295 (383)
..++.++.. +..+++..++....+. .+ -...+..+++++..+-.+...- ..-+|-+.|++|.+.+.+..
T Consensus 48 gA~VtVVap------~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~p~~ 121 (223)
T PRK05562 48 GCYVYILSK------KFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSDYKK 121 (223)
T ss_pred CCEEEEEcC------CCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCCccc
Confidence 456666653 3445566665443332 11 1233467787777765444444 34455677999998887665
Q ss_pred ccccc
Q 043412 296 TEYLT 300 (383)
Q Consensus 296 ~e~v~ 300 (383)
.+++-
T Consensus 122 ~dFi~ 126 (223)
T PRK05562 122 GLCII 126 (223)
T ss_pred CeEEe
Confidence 55543
No 283
>KOG2619 consensus Fucosyltransferase [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=28.28 E-value=1.2e+02 Score=28.01 Aligned_cols=57 Identities=14% Similarity=0.109 Sum_probs=37.2
Q ss_pred HHHHHHHcCC-CEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHH
Q 043412 276 PLVEAMSMGL-PVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLVVSNVDEAKAK 350 (383)
Q Consensus 276 ~~~Ea~a~G~-PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~~~~~~~ 350 (383)
++--|+-+|. |||... +...+++.++.-+.++-- .++++||+.|+++-+|+..+.+.
T Consensus 269 Kfw~al~~gsVPVvlg~-~n~e~fvP~~SfI~vdDF-----------------~s~~ela~ylk~L~~n~~~Y~~Y 326 (372)
T KOG2619|consen 269 KFWNALDAGSVPVVLGP-PNYENFVPPDSFIHVDDF-----------------QSPQELAAYLKKLDKNPAAYLSY 326 (372)
T ss_pred HHHhhhhcCcccEEECC-ccccccCCCcceEehhhc-----------------CCHHHHHHHHHHhhcCHHHHHHH
Confidence 3445555554 777776 556666654433333211 19999999999999999877654
No 284
>PRK12862 malic enzyme; Reviewed
Probab=27.94 E-value=4.3e+02 Score=27.34 Aligned_cols=48 Identities=23% Similarity=0.154 Sum_probs=36.0
Q ss_pred CccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCcccccc
Q 043412 252 KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYLT 300 (383)
Q Consensus 252 ~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~ 300 (383)
..+...+..+|+++-.|....|.--+++.|+ ..|+|-.-....+|...
T Consensus 253 ~~l~e~~~~~~v~iG~s~~g~~~~~~v~~M~-~~piifalsNP~~E~~p 300 (763)
T PRK12862 253 RTLAEVIEGADVFLGLSAAGVLKPEMVKKMA-PRPLIFALANPTPEILP 300 (763)
T ss_pred CCHHHHHcCCCEEEEcCCCCCCCHHHHHHhc-cCCEEEeCCCCcccCCH
Confidence 3455666889999999886667788999998 88988775544566544
No 285
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=27.50 E-value=61 Score=28.75 Aligned_cols=66 Identities=17% Similarity=0.146 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHhcccCCCceeeeecCCCcccchhhcCCChhh-------h-hHHHHHHhhhcCCCccEEEecC
Q 043412 11 SSESWSYILALNEHVKNPRFKLAIEHHGDLQSLQFWEGLPHHM-------R-NLAVELYNTECRTNETVVICHS 76 (383)
Q Consensus 11 ~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~l~~~~~~~~pDiV~~~~ 76 (383)
++...++..+.........+.+.+....+......-.++|... . ..-..+.+.+++++||+|++..
T Consensus 100 gsnl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlag 173 (286)
T PRK06027 100 DHCLGDLLWRWRSGELPVEIAAVISNHDDLRSLVERFGIPFHHVPVTKETKAEAEARLLELIDEYQPDLVVLAR 173 (286)
T ss_pred CCCHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEeccCccccchhHHHHHHHHHHhCCCEEEEec
Confidence 5556667777665433344555666555443332222444211 1 1233567788899999999984
No 286
>PRK02079 pyrroloquinoline quinone biosynthesis protein PqqD; Provisional
Probab=27.46 E-value=1.7e+02 Score=20.67 Aligned_cols=50 Identities=8% Similarity=0.052 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcc
Q 043412 329 SVDKLRALMRLVVSNVDEAKAKGKQAREDMIQRF-SPETVAGIVTDHIKDILSSK 382 (383)
Q Consensus 329 ~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~-s~~~~~~~~~~~~~~~~~~~ 382 (383)
..++.+..|-+.++.......+... +.++| ..+...+...++++.+.+++
T Consensus 33 ~Lnetg~~Iw~~~DG~~tv~eIi~~----L~~~y~~~~~~~~DV~~fl~~L~~~g 83 (88)
T PRK02079 33 KLNESAGEILGLIDGKRTVAAIIAE----LQQQFPDVPGLDEDVLEFLEVARAKH 83 (88)
T ss_pred eechHHHHHHHHccCCCCHHHHHHH----HHHHccchhhHHHHHHHHHHHHHHCc
Confidence 5667777777777765444444333 45667 65567788888888776554
No 287
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=27.27 E-value=4e+02 Score=22.88 Aligned_cols=111 Identities=11% Similarity=0.024 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHhccCCCeEEEEEeCCC-CCCCchHHHHHHHHhhCCCC-------------Cccc----ccccc---Cc
Q 043412 204 GWDVLLKAYLEEFSKADGVVLYLLTNPY-HSGRDFGNKIVNFVEDSDLE-------------KPDD----GWAPA---AD 262 (383)
Q Consensus 204 ~~~~ll~a~~~l~~~~~~~~l~i~G~~~-~~~~~~~~~~~~~~~~~~~~-------------~~v~----~~~~~---ad 262 (383)
.++.++++++..++..-.+.+.+..... ..+.++..++.+.+.+.|.. +++. .+.+. ..
T Consensus 113 ~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~ 192 (265)
T cd03174 113 DLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALPDVP 192 (265)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCe
Confidence 4566677777766665555555532221 12233344455555555543 1111 11122 34
Q ss_pred eEEecCCCCCCCh-HHHHHHHcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHHH
Q 043412 263 VFVLPSRGEGWGR-PLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRLV 340 (383)
Q Consensus 263 i~v~ps~~e~~~~-~~~Ea~a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~l 340 (383)
+.+...-.-|.++ ..++|+.+|+-.|-+..+|+.+-..+- +.++++..+...
T Consensus 193 ~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G~~~Gn~--------------------------~~e~~~~~l~~~ 245 (265)
T cd03174 193 LGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLGERAGNA--------------------------ATEDLVAALEGL 245 (265)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCCCEEEeccccccccccCc--------------------------cHHHHHHHHHhc
Confidence 4444443334443 579999999999999988877533221 788888888765
No 288
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=26.99 E-value=3.7e+02 Score=22.39 Aligned_cols=97 Identities=12% Similarity=0.115 Sum_probs=51.8
Q ss_pred CCcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC----CccccccccCce
Q 043412 188 SKEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE----KPDDGWAPAADV 263 (383)
Q Consensus 188 ~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~adi 263 (383)
..+.+++..|... ...++.|.+. ..++.++.. ...+++.++.+..++. +--...+..+++
T Consensus 9 gk~vlVvGgG~va--------~rk~~~Ll~~--ga~VtVvsp------~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~l 72 (205)
T TIGR01470 9 GRAVLVVGGGDVA--------LRKARLLLKA--GAQLRVIAE------ELESELTLLAEQGGITWLARCFDADILEGAFL 72 (205)
T ss_pred CCeEEEECcCHHH--------HHHHHHHHHC--CCEEEEEcC------CCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEE
Confidence 4455555555432 3334444444 345555543 2235566665544332 111244577887
Q ss_pred EEecCCCC-CCChHHHHHHHcCCCEEEcCCCCcccccc
Q 043412 264 FVLPSRGE-GWGRPLVEAMSMGLPVIATNWSGPTEYLT 300 (383)
Q Consensus 264 ~v~ps~~e-~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~ 300 (383)
++..+-.. ---....+|-..|+||-+.+.....+++-
T Consensus 73 Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f~~ 110 (205)
T TIGR01470 73 VIAATDDEELNRRVAHAARARGVPVNVVDDPELCSFIF 110 (205)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeEEE
Confidence 76654332 22235667778999998887766555554
No 289
>PRK13660 hypothetical protein; Provisional
Probab=26.82 E-value=3.6e+02 Score=22.12 Aligned_cols=37 Identities=14% Similarity=-0.036 Sum_probs=27.5
Q ss_pred cEEEEEeeccccccCHHH-HHHHHHHHhccCCCeEEEEEeCC
Q 043412 190 EFVFLSVFKWEYRKGWDV-LLKAYLEEFSKADGVVLYLLTNP 230 (383)
Q Consensus 190 ~~~i~~~g~~~~~K~~~~-ll~a~~~l~~~~~~~~l~i~G~~ 230 (383)
--.|++.|. -|+|. ..+++.+|++++|+++|.++-.-
T Consensus 43 ~~wfi~gga----lG~d~wAaEvvl~LK~~yp~lkL~~~~PF 80 (182)
T PRK13660 43 LEWVIISGQ----LGVELWAAEVVLELKEEYPDLKLAVITPF 80 (182)
T ss_pred CCEEEECCc----chHHHHHHHHHHHHHhhCCCeEEEEEeCc
Confidence 344555554 48877 46888899999999999988754
No 290
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=26.78 E-value=3.9e+02 Score=22.59 Aligned_cols=89 Identities=15% Similarity=0.110 Sum_probs=53.7
Q ss_pred HHHHHHHHH-HhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC-----------CccccccccCceEEecCC----
Q 043412 206 DVLLKAYLE-EFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE-----------KPDDGWAPAADVFVLPSR---- 269 (383)
Q Consensus 206 ~~ll~a~~~-l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~-----------~~v~~~~~~adi~v~ps~---- 269 (383)
+.+..-+.. +..+.+.+.|+=.-++......|.+..++..+.+|+. +.+...+..+|++...--
T Consensus 18 ~~~~~~i~n~l~g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNTF~ 97 (224)
T COG3340 18 EHFLPFIANFLQGKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNTFN 97 (224)
T ss_pred hhhhHHHHHHhcCCCceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchHHH
Confidence 344444444 3333444554433333333445777788888888875 445667778998765431
Q ss_pred ------CCCCChHHHHHHHcCCCEEEcCCCC
Q 043412 270 ------GEGWGRPLVEAMSMGLPVIATNWSG 294 (383)
Q Consensus 270 ------~e~~~~~~~Ea~a~G~PvI~~~~~g 294 (383)
.-|.--.+.|+...|+|.|....|.
T Consensus 98 LL~~lke~gld~iIr~~vk~G~~YiG~SAGA 128 (224)
T COG3340 98 LLQELKETGLDDIIRERVKAGTPYIGWSAGA 128 (224)
T ss_pred HHHHHHHhCcHHHHHHHHHcCCceEEeccCc
Confidence 1122236889999999999887764
No 291
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=26.42 E-value=1.8e+02 Score=24.70 Aligned_cols=69 Identities=12% Similarity=0.038 Sum_probs=37.4
Q ss_pred cccccC-HHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC-----CccccccccCceEEecCC
Q 043412 199 WEYRKG-WDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE-----KPDDGWAPAADVFVLPSR 269 (383)
Q Consensus 199 ~~~~K~-~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~adi~v~ps~ 269 (383)
++|.|- .+...+.++.+... ....+++|+...-..+...++.+.+++..+. .+...+-..+|.+++||.
T Consensus 6 iDPdK~~~~~~~~~~~~~~~~--gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~~i~~~aDa~l~~sv 80 (223)
T TIGR01768 6 IDPDKTNPSEADEIAKAAAES--GTDAILIGGSQGVTYEKTDTLIEALRRYGLPIILFPSNPTNVSRDADALFFPSV 80 (223)
T ss_pred ECCCCCCccccHHHHHHHHhc--CCCEEEEcCCCcccHHHHHHHHHHHhccCCCEEEeCCCccccCcCCCEEEEEEe
Confidence 455552 22233344444333 3566777876432233344455556655543 344556688999999985
No 292
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=26.21 E-value=99 Score=22.77 Aligned_cols=42 Identities=2% Similarity=-0.001 Sum_probs=28.5
Q ss_pred HHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCC
Q 043412 209 LKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE 251 (383)
Q Consensus 209 l~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~ 251 (383)
.+-+..+....|+..++++|.|.. ......++.+.+++.|+.
T Consensus 41 ~~~l~~l~~~~p~pe~liiGtG~~-~~~~~~~~~~~l~~~GI~ 82 (110)
T PF04430_consen 41 PEDLEELLELEPKPEVLIIGTGKR-QLFLPPELREYLRKKGIG 82 (110)
T ss_dssp THHHHHHHCTCCS-SEEEEEETTS--SECTHHHHHHHHTTT-E
T ss_pred HHHHHHHHhccCCCcEEEEccCCc-cccCCHHHHHHHHHcCCe
Confidence 455566666678889999999854 334457788888888874
No 293
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=25.95 E-value=5.2e+02 Score=23.90 Aligned_cols=99 Identities=17% Similarity=0.202 Sum_probs=56.7
Q ss_pred cEEEEEeeccc--cccCHHHHHHHHHHHhcc------CCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCCCc--------
Q 043412 190 EFVFLSVFKWE--YRKGWDVLLKAYLEEFSK------ADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLEKP-------- 253 (383)
Q Consensus 190 ~~~i~~~g~~~--~~K~~~~ll~a~~~l~~~------~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~-------- 253 (383)
.++.+....+. ...|.+..++++.+.... ...-.+.++|...... ....+++++.+..|+.-.
T Consensus 113 ~vv~~~~~gf~~~~~~G~~~a~~~~~~~~~~~~~~~~~~~~~vNlig~~~~~~-~d~~el~~ll~~~G~~v~~~~~~~~s 191 (399)
T cd00316 113 PVVPASTPGFRGSQSAGYDAAVKAIIDHLVGTAEPEETEPGSVNLIGGYNLGG-GDLRELKRLLEEMGIRVNALFDGGTT 191 (399)
T ss_pred ceEEeeCCCCcccHHHHHHHHHHHHHHHHhcccCcCCCCCCcEEEECCCCCch-hhHHHHHHHHHHcCCcEEEEcCCCCC
Confidence 34444444443 346778888777544332 2234677888654322 246888999999988621
Q ss_pred ccccc--ccCceEEecCCCCCCChHHHHHHH--cCCCEEEcC
Q 043412 254 DDGWA--PAADVFVLPSRGEGWGRPLVEAMS--MGLPVIATN 291 (383)
Q Consensus 254 v~~~~--~~adi~v~ps~~e~~~~~~~Ea~a--~G~PvI~~~ 291 (383)
+..+- ..|.+-+..+.. +|..+.|.|. +|+|.+...
T Consensus 192 ~~~i~~~~~A~~nlv~~~~--~g~~~a~~l~~~~g~p~~~~~ 231 (399)
T cd00316 192 VEELRELGNAKLNLVLCRE--SGLYLARYLEEKYGIPYILIN 231 (399)
T ss_pred HHHHHhhccCcEEEEecHh--HHHHHHHHHHHHhCCCeEEeC
Confidence 11222 344444444331 3556666663 899988876
No 294
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=25.76 E-value=5.9e+02 Score=24.29 Aligned_cols=97 Identities=10% Similarity=0.101 Sum_probs=58.3
Q ss_pred ceEEecCC--CCCCChHHHHHHHcCCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHHHHHHHH
Q 043412 262 DVFVLPSR--GEGWGRPLVEAMSMGLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKLRALMRL 339 (383)
Q Consensus 262 di~v~ps~--~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~la~~i~~ 339 (383)
+-+|++-. ....|..+-=+...|+|+.....|...|-++.- ..+.....++..+|...|.+.+.+
T Consensus 235 ~gvIlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f-------------~~~~~~~~ilgmgd~~~l~e~~~~ 301 (437)
T PRK00771 235 GGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERF-------------DPDRFISRLLGMGDLESLLEKVEE 301 (437)
T ss_pred CEEEEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcC-------------CHHHHHHHHhCCCChHHHHHHHHH
Confidence 44555433 223566677777889999887776443333321 111123344555588899998888
Q ss_pred HhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043412 340 VVSNVDEAKAKGKQAREDMIQRFSPETVAGIVTDHI 375 (383)
Q Consensus 340 ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~ 375 (383)
.++ .+..+++.++. ....|+.+.+.+++.++-
T Consensus 302 ~~~-~~~~~~~~~~~---~~~~f~l~d~~~q~~~~~ 333 (437)
T PRK00771 302 ALD-EEEEEKDVEKM---MKGKFTLKDMYKQLEAMN 333 (437)
T ss_pred hhh-HHHHHHHHHHH---HcCCcCHHHHHHHHHHHH
Confidence 763 44444444432 235799999988887654
No 295
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=25.72 E-value=40 Score=21.30 Aligned_cols=24 Identities=21% Similarity=0.050 Sum_probs=12.8
Q ss_pred HHHHHHcCCCEEEcCCCCcccccc
Q 043412 277 LVEAMSMGLPVIATNWSGPTEYLT 300 (383)
Q Consensus 277 ~~Ea~a~G~PvI~~~~~g~~e~v~ 300 (383)
.-=|...|+|+++....-..+.|.
T Consensus 8 ~~~A~~~~lp~~~gSDAH~~~~vG 31 (56)
T PF13263_consen 8 AELAEKYGLPFTGGSDAHFLEEVG 31 (56)
T ss_dssp HHHHHHTT--EEEE--BSSGGGTT
T ss_pred HHHHHHcCCCeEeEEcccChhhcC
Confidence 334667899999887755555553
No 296
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=25.70 E-value=2.4e+02 Score=23.66 Aligned_cols=68 Identities=15% Similarity=0.089 Sum_probs=37.0
Q ss_pred cccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhh-CCCC-----CccccccccCceEEecCC
Q 043412 199 WEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVED-SDLE-----KPDDGWAPAADVFVLPSR 269 (383)
Q Consensus 199 ~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~-~~~~-----~~v~~~~~~adi~v~ps~ 269 (383)
++|.|- +.+.+.++.+.+. ....+++|+...-+.+...++.+.+++ ..+. .+...+-..+|.+++||.
T Consensus 5 iDP~k~-e~~~~ia~~v~~~--gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~~i~~~aD~~~~~sl 78 (205)
T TIGR01769 5 IDPEKS-DEIEKIAKNAKDA--GTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVILFPGNVNGLSRYADAVFFMSL 78 (205)
T ss_pred cCCCcH-HHHHHHHHHHHhc--CCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEEECCCccccCcCCCEEEEEEe
Confidence 455565 5555544444332 356777776532222333334444554 3332 344555688999999985
No 297
>TIGR03586 PseI pseudaminic acid synthase.
Probab=25.39 E-value=2.7e+02 Score=25.29 Aligned_cols=57 Identities=16% Similarity=0.219 Sum_probs=33.1
Q ss_pred chHHHHHHHHhhCCCC--------Ccccccccc-CceEEecCCCCCCChHHHHHHH-cCCCEEEcCCC
Q 043412 236 DFGNKIVNFVEDSDLE--------KPDDGWAPA-ADVFVLPSRGEGWGRPLVEAMS-MGLPVIATNWS 293 (383)
Q Consensus 236 ~~~~~~~~~~~~~~~~--------~~v~~~~~~-adi~v~ps~~e~~~~~~~Ea~a-~G~PvI~~~~~ 293 (383)
+...++.+++++.|+. +.+..+... .+++=.+|. +-....++|+++ .|+|||.|...
T Consensus 77 e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI~S~-~~~n~~LL~~va~~gkPvilstG~ 143 (327)
T TIGR03586 77 EWHKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYKIASF-EITDLPLIRYVAKTGKPIIMSTGI 143 (327)
T ss_pred HHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEECCc-cccCHHHHHHHHhcCCcEEEECCC
Confidence 3445566667777664 112222222 466666664 344567777765 69999988754
No 298
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=24.90 E-value=2.2e+02 Score=25.82 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=17.4
Q ss_pred CccccccccCceEE--ecCCCCCCChH
Q 043412 252 KPDDGWAPAADVFV--LPSRGEGWGRP 276 (383)
Q Consensus 252 ~~v~~~~~~adi~v--~ps~~e~~~~~ 276 (383)
+.+..+++.||+++ .|...|+-|+.
T Consensus 189 ~~Ld~lL~~sDiv~lh~PlT~eT~g~i 215 (324)
T COG0111 189 DSLDELLAEADILTLHLPLTPETRGLI 215 (324)
T ss_pred ccHHHHHhhCCEEEEcCCCCcchhccc
Confidence 55778889999866 45556666654
No 299
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=24.86 E-value=53 Score=30.65 Aligned_cols=96 Identities=11% Similarity=0.062 Sum_probs=55.4
Q ss_pred CcEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhC------CC--CCcccccc--
Q 043412 189 KEFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDS------DL--EKPDDGWA-- 258 (383)
Q Consensus 189 ~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~------~~--~~~v~~~~-- 258 (383)
...+.+...+..+..-..- .++++++++|++.+++....+ .-.+...+..... .+ ..-+..++
T Consensus 49 ~p~vWiHaaSVGEv~a~~p---Lv~~l~~~~P~~~ilvTt~T~----Tg~e~a~~~~~~~v~h~YlP~D~~~~v~rFl~~ 121 (419)
T COG1519 49 GPLVWIHAASVGEVLAALP---LVRALRERFPDLRILVTTMTP----TGAERAAALFGDSVIHQYLPLDLPIAVRRFLRK 121 (419)
T ss_pred CCeEEEEecchhHHHHHHH---HHHHHHHhCCCCCEEEEecCc----cHHHHHHHHcCCCeEEEecCcCchHHHHHHHHh
Confidence 3556666666655444444 445556678999998887442 2223333333221 11 01112222
Q ss_pred ccCceEEecCCCCCCChHHHHHHHcCCCEEEcCC
Q 043412 259 PAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNW 292 (383)
Q Consensus 259 ~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~ 292 (383)
-.-|++|. ...|-||+.+.|+-..|+|++.-|.
T Consensus 122 ~~P~l~Ii-~EtElWPnli~e~~~~~~p~~LvNa 154 (419)
T COG1519 122 WRPKLLII-METELWPNLINELKRRGIPLVLVNA 154 (419)
T ss_pred cCCCEEEE-EeccccHHHHHHHHHcCCCEEEEee
Confidence 33444443 3468899999999999999887764
No 300
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=24.77 E-value=1.8e+02 Score=21.87 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=37.5
Q ss_pred ccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCCCc
Q 043412 200 EYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLEKP 253 (383)
Q Consensus 200 ~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (383)
+..+.-++-.+.+.++.+..+++.++++|.|..- .-....+..-.+..|+.-+
T Consensus 48 ~v~~~~~Lt~e~f~~vl~~a~~~EilliGTG~~~-rf~p~~l~aal~~~gIsve 100 (127)
T COG3737 48 EVATLSDLTPEDFERVLAEAPDVEILLIGTGARL-RFPPPKLRAALKAAGISVE 100 (127)
T ss_pred cccChhhCCHHHHHHHHhcCCCceEEEEecCccc-cCCCHHHHHHHHHcCCccc
Confidence 4456666777888888888999999999998541 1223566666777777543
No 301
>PF01924 HypD: Hydrogenase formation hypA family; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes []. This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas [].; GO: 0046872 metal ion binding; PDB: 2Z1D_A.
Probab=24.61 E-value=72 Score=29.00 Aligned_cols=33 Identities=21% Similarity=0.433 Sum_probs=18.2
Q ss_pred cCceEEecCC-CCCCChHHHHHHH--cCCCEEEcCC
Q 043412 260 AADVFVLPSR-GEGWGRPLVEAMS--MGLPVIATNW 292 (383)
Q Consensus 260 ~adi~v~ps~-~e~~~~~~~Ea~a--~G~PvI~~~~ 292 (383)
..|-|+.|.. .--.|....+-++ +|+|+|.+..
T Consensus 180 ~idGfi~PGHVs~I~G~~~y~~l~~~y~~P~vIaGF 215 (355)
T PF01924_consen 180 KIDGFICPGHVSTIIGSEPYEFLAEEYGIPCVIAGF 215 (355)
T ss_dssp --SEEEEEHHHHHHHCCHHHHHHHHCC---EEEE-S
T ss_pred CccEEEeCCeeeEEecchhhHHHHHHcCCCeEEcCC
Confidence 5688998864 2234566666655 5799998875
No 302
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=23.67 E-value=96 Score=19.37 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCH
Q 043412 330 VDKLRALMRLVVSNVDEAKAKGKQAREDMIQRFSP 364 (383)
Q Consensus 330 ~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~ 364 (383)
.+++.+++..++.+.++-.--.+..++.+.++|..
T Consensus 2 d~~i~~~i~~iL~~~dl~~vT~k~vr~~Le~~~~~ 36 (54)
T PF08766_consen 2 DEEIREAIREILREADLDTVTKKQVREQLEERFGV 36 (54)
T ss_dssp HHHHHHHHHHHHTTS-GGG--HHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHHHHhCCHhHhhHHHHHHHHHHHHCC
Confidence 46788899999986654433334444445555543
No 303
>COG2998 TupB ABC-type tungstate transport system, permease component [Coenzyme metabolism]
Probab=23.59 E-value=4.7e+02 Score=22.40 Aligned_cols=98 Identities=13% Similarity=0.114 Sum_probs=53.3
Q ss_pred CCCCEEEEeChHHHHHHHhcCCCCCCeEEecCCCcCCCCCCCCCCCCccccCCccccccCCCCCCCCcEEEEEeec-ccc
Q 043412 123 NRMDFVWVPTDFHVSTFIRSGVDPAKVVKIVQPVHVGFFDPVNCDPIDLASIGKPVLGLSNMNTSSKEFVFLSVFK-WEY 201 (383)
Q Consensus 123 ~~ad~vi~~s~~~~~~~~~~~~~~~~i~vi~ngid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g~-~~~ 201 (383)
..+|.+++.++...+.|.+.|.-..+--+.+|- |+|+.... ...
T Consensus 78 gdvDvv~vHapk~E~~fv~~G~gv~r~~vmYNd-----------------------------------FiiVgp~~dpA~ 122 (280)
T COG2998 78 GDVDVVIVHAPKAEKEFVKDGFGVDRRPVMYND-----------------------------------FIIVGPADDPAG 122 (280)
T ss_pred CCcCEEEEeCcHHHHHHHHcCCCccCcceeeee-----------------------------------EEEECCcccchh
Confidence 568999999998888887744322233333431 11111111 112
Q ss_pred ccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCCCccccccccC
Q 043412 202 RKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLEKPDDGWAPAA 261 (383)
Q Consensus 202 ~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a 261 (383)
.|+-..+.+++..+.++ .++|+--|+.+.. ...-..+.+..|...+...+|.++
T Consensus 123 ~k~~kn~~e~fe~Ia~~--ka~FvSRGD~SGT----~~~E~~lWk~~g~~p~~~~wY~s~ 176 (280)
T COG2998 123 IKDAKNGKEAFEKIAEE--KAKFVSRGDNSGT----DSKELSLWKVTGIEPTVKGWYISA 176 (280)
T ss_pred cccchhHHHHHHHHHHc--CCeeEecCCCCCc----cHHHHHHHHHcCCCCCCCcceeec
Confidence 34545566777666553 5677777765332 222223445777776666666444
No 304
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=23.27 E-value=1.6e+02 Score=28.17 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=23.9
Q ss_pred ccccccCc-eEEecCCCCCCChHHHHHHHcCCCEEEcCCCC
Q 043412 255 DGWAPAAD-VFVLPSRGEGWGRPLVEAMSMGLPVIATNWSG 294 (383)
Q Consensus 255 ~~~~~~ad-i~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g 294 (383)
..++...| ++..+|. -| .||+.||+|+++...+-
T Consensus 220 isll~~~dkvy~~ts~-mg-----feall~~~~~~~fg~p~ 254 (671)
T COG3563 220 ISLLQNVDKVYCVTSQ-MG-----FEALLCGKPLTTFGLPW 254 (671)
T ss_pred HHHHHhcceeEEeecc-cc-----HHHHhcCCceeeecchh
Confidence 36667777 4555553 23 59999999999987643
No 305
>PRK08508 biotin synthase; Provisional
Probab=23.13 E-value=5.2e+02 Score=22.74 Aligned_cols=102 Identities=13% Similarity=0.069 Sum_probs=50.9
Q ss_pred cEEEEEeeccccccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCCCccccccccCceEEecCC
Q 043412 190 EFVFLSVFKWEYRKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLEKPDDGWAPAADVFVLPSR 269 (383)
Q Consensus 190 ~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~adi~v~ps~ 269 (383)
.+.++..|.-.....++.++++++.++++.|++.+... .|. ...+.++ ..++.|+. .+..=+..++- ++|..
T Consensus 59 ~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s-~G~----~~~e~l~-~Lk~aGld-~~~~~lEt~~~-~~~~i 130 (279)
T PRK08508 59 GFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIAC-NGT----ASVEQLK-ELKKAGIF-SYNHNLETSKE-FFPKI 130 (279)
T ss_pred EEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEec-CCC----CCHHHHH-HHHHcCCC-EEcccccchHH-HhcCC
Confidence 44455555533346888999999999887787775432 221 1233333 33344442 11100111111 12332
Q ss_pred C--CCCCh---HHHHHHHcCCCEEEcCCCCccccc
Q 043412 270 G--EGWGR---PLVEAMSMGLPVIATNWSGPTEYL 299 (383)
Q Consensus 270 ~--e~~~~---~~~Ea~a~G~PvI~~~~~g~~e~v 299 (383)
. ..+-- .+-+|-..|+++-++-.-|+.|-.
T Consensus 131 ~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ 165 (279)
T PRK08508 131 CTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESW 165 (279)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeecceeEEecCCCH
Confidence 1 11222 334577889887666665555533
No 306
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.01 E-value=4.4e+02 Score=23.13 Aligned_cols=71 Identities=11% Similarity=0.156 Sum_probs=40.5
Q ss_pred HHHHHHHhhCCCCCccccccccCceEEecCCCCCCChHHHHHHH------cCCCEEEcCCCCccccccCCCceeeecccc
Q 043412 239 NKIVNFVEDSDLEKPDDGWAPAADVFVLPSRGEGWGRPLVEAMS------MGLPVIATNWSGPTEYLTEENGYPLLVGRM 312 (383)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a------~G~PvI~~~~~g~~e~v~~~~g~~~~~~~~ 312 (383)
.++.++.+..|+.-+ ...+|+++.-- .+ -+++.|+. .++|++.-+.|. -||+.+.
T Consensus 18 ~~l~~~l~~~g~~~~----~~~~Dlvi~iG-GD---GT~L~a~~~~~~~~~~iPilGIN~G~--------lGFL~~~--- 78 (265)
T PRK04885 18 SKLKKYLKDFGFILD----EKNPDIVISVG-GD---GTLLSAFHRYENQLDKVRFVGVHTGH--------LGFYTDW--- 78 (265)
T ss_pred HHHHHHHHHcCCccC----CcCCCEEEEEC-Cc---HHHHHHHHHhcccCCCCeEEEEeCCC--------ceecccC---
Confidence 344444444554310 14578766322 22 34555543 488999988753 3444432
Q ss_pred cccccCCCCcccccCCCHHHHHHHHHHHhcCH
Q 043412 313 SEVTEGPFKGHFWAEPSVDKLRALMRLVVSNV 344 (383)
Q Consensus 313 ~~~~~~~~~g~~~~~~~~~~la~~i~~ll~~~ 344 (383)
+++++.+.+.+++++.
T Consensus 79 ----------------~~~~~~~~l~~i~~g~ 94 (265)
T PRK04885 79 ----------------RPFEVDKLVIALAKDP 94 (265)
T ss_pred ----------------CHHHHHHHHHHHHcCC
Confidence 6888888888887743
No 307
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=22.50 E-value=6.4e+02 Score=23.56 Aligned_cols=101 Identities=12% Similarity=0.045 Sum_probs=56.1
Q ss_pred EEEEEeeccccccCHHHHHHHHHHH-hccCCCeEEEEEeCCCC-------------CCCc-hHHHHHHHHhhCCCC---C
Q 043412 191 FVFLSVFKWEYRKGWDVLLKAYLEE-FSKADGVVLYLLTNPYH-------------SGRD-FGNKIVNFVEDSDLE---K 252 (383)
Q Consensus 191 ~~i~~~g~~~~~K~~~~ll~a~~~l-~~~~~~~~l~i~G~~~~-------------~~~~-~~~~~~~~~~~~~~~---~ 252 (383)
+++.+.|. ...|=+.+++++-.. ++..|+++++++|..++ .... ....+++..+..... -
T Consensus 4 ~L~g~~g~--gN~Gdeail~all~~l~~~~~~~~~~~~~~~p~~i~~p~~~~~~p~~~~~~l~g~~k~v~R~~~k~~~~~ 81 (385)
T COG2327 4 LLLGYYGF--GNIGDEAILKALLDMLRRLNPDAKVLVMGRRPPVIVDPVFLSANPEGSAAGLNGRVKSVLRRRLKHPGLV 81 (385)
T ss_pred EEEeeecC--CCcccHHHHHHHHHHHHhhCcccceeeeecCCcccccceeecCCcccCchhhhHHHHHHHHHhhccccHH
Confidence 34455554 456777888876444 45589999999998433 1111 111133222222111 1
Q ss_pred ccccccccCceEEecCC---------CCC--CChHHHHHHHcCCCEEEcCCC
Q 043412 253 PDDGWAPAADVFVLPSR---------GEG--WGRPLVEAMSMGLPVIATNWS 293 (383)
Q Consensus 253 ~v~~~~~~adi~v~ps~---------~e~--~~~~~~Ea~a~G~PvI~~~~~ 293 (383)
.+-..+..+|+++.+-- .-+ ++..+.=|..+|+|++....+
T Consensus 82 ~il~~l~~~d~~I~~Gg~l~~d~~~~~~~~~~~~~~~la~l~~kp~~~~g~s 133 (385)
T COG2327 82 SILSALGKADLIIIGGGGLLQDVTSSRSIIYYGGSILLARLAGKPTFFFGQS 133 (385)
T ss_pred HHHHHhhhCCEEEEcCcccccCccccceehhhHHHHHHHHHcCCCEEEEecc
Confidence 23455679999997731 111 222355566799999887663
No 308
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=22.33 E-value=2.3e+02 Score=18.25 Aligned_cols=68 Identities=15% Similarity=0.343 Sum_probs=42.6
Q ss_pred CCeEEEEEeCCCCCCCchHHHHHHHHhhCCCCCccccccc-cCceEEecCCCCCCChHHHHHHHcCCCEEEcCC
Q 043412 220 DGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLEKPDDGWAP-AADVFVLPSRGEGWGRPLVEAMSMGLPVIATNW 292 (383)
Q Consensus 220 ~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~ 292 (383)
.+..+.+.|+. .....+.+.+++...|-.- ...+-. .+..+|..... ........+...++|+|...+
T Consensus 4 ~g~~~~~~g~~---~~~~~~~l~~~i~~~Gg~~-~~~~~~~~~thvi~~~~~-~~~~~~~~~~~~~~~iV~~~W 72 (80)
T smart00292 4 KGKVFVITGKF---DKNERDELKELIEALGGKV-TSSLSSKTTTHVIVGSPE-GGKLELLLAIALGIPIVTEDW 72 (80)
T ss_pred CCeEEEEeCCC---CCccHHHHHHHHHHcCCEE-ecccCccceeEEEEcCCC-CccHHHHHHHHcCCCCccHHH
Confidence 46788888732 3466788889998888641 112222 56666665432 122226888899999987654
No 309
>PRK12861 malic enzyme; Reviewed
Probab=22.32 E-value=3.9e+02 Score=27.62 Aligned_cols=45 Identities=24% Similarity=0.202 Sum_probs=30.5
Q ss_pred CccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccc
Q 043412 252 KPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTE 297 (383)
Q Consensus 252 ~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e 297 (383)
..+...+..+|+++-.|....|.--++++|+- .|+|-.-....+|
T Consensus 249 ~~L~eai~~advliG~S~~g~ft~e~v~~Ma~-~PIIFaLsNPtpE 293 (764)
T PRK12861 249 RTLAEVIGGADVFLGLSAGGVLKAEMLKAMAA-RPLILALANPTPE 293 (764)
T ss_pred CCHHHHHhcCCEEEEcCCCCCCCHHHHHHhcc-CCEEEECCCCCcc
Confidence 34556668889999888755566678888876 7777654433344
No 310
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=22.30 E-value=3e+02 Score=22.21 Aligned_cols=67 Identities=15% Similarity=0.052 Sum_probs=38.4
Q ss_pred HHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhhCCCCCccccccccCceEEecCCCCCCChHHHHHHHcCCC
Q 043412 208 LLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLEKPDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLP 286 (383)
Q Consensus 208 ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~P 286 (383)
.++.+..+++++|+..+.++-+. +....+..+- +...+.+.+.+++.|...+-.+..+-|.++.|.+
T Consensus 85 T~~tl~~l~~~~p~~~~~~iiG~-----D~l~~l~~W~-------~~~~i~~~~~l~~~~~~~~ISST~IR~~l~~g~~ 151 (174)
T PRK08887 85 TYALLTRLQELYPEADLTFVIGP-----DNFLKFAKFY-------KADEITQRWTVMACPEKVPIRSTDIRNALQNGKD 151 (174)
T ss_pred hHHHHHHHHHHCCCCeEEEEEcc-----chHHHHHHhC-------CHHHHHhhCeEEEeCCCCCcCHHHHHHHHHcCCC
Confidence 44566666666787666444332 2333343322 1245567777877775445556667777777654
No 311
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=22.03 E-value=4.9e+02 Score=26.54 Aligned_cols=93 Identities=15% Similarity=0.080 Sum_probs=53.0
Q ss_pred CCcEEEEEeeccccccCHH--HHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHH-HHHhhCCCCCccccccccCceE
Q 043412 188 SKEFVFLSVFKWEYRKGWD--VLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIV-NFVEDSDLEKPDDGWAPAADVF 264 (383)
Q Consensus 188 ~~~~~i~~~g~~~~~K~~~--~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~adi~ 264 (383)
+.+.-++..|.....||-+ ..-+|.+.++++.|+ +.+-|.- .+..-+. +..+..+... .+-..||++
T Consensus 556 ePkVAlLs~st~~s~kg~~~~~v~eA~~l~~~~~~~--~~vdGp~-----q~D~A~~~~~~~~k~~~s---~vaG~A~vl 625 (684)
T PRK05632 556 EPRVAMLSYSTGTSGSGADVEKVREATRLARERRPD--LLIDGPL-----QYDAAVDPSVARSKAPNS---PVAGRATVF 625 (684)
T ss_pred CCeEEEEecCCCCCCCCchhhHHHHHHHHHHhhCCC--CEEEecc-----hHHHhcCHHHHHhhCCCC---ccCCcCCEE
Confidence 3566677777667777755 677888777766665 5555543 2222222 2233333322 344789999
Q ss_pred EecCCC-CCCChHHHHHHHcCCCEEEcC
Q 043412 265 VLPSRG-EGWGRPLVEAMSMGLPVIATN 291 (383)
Q Consensus 265 v~ps~~-e~~~~~~~Ea~a~G~PvI~~~ 291 (383)
++|... .....+++..+ +|...+.+-
T Consensus 626 ifP~l~~gN~~yK~~~~~-~~~~~~gp~ 652 (684)
T PRK05632 626 IFPDLNTGNTTYKAVQRS-AGAVSIGPM 652 (684)
T ss_pred EcCChhHhHHHHHHHHHh-cCCceeccc
Confidence 999863 33445666655 344333333
No 312
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.83 E-value=3.7e+02 Score=23.53 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=34.1
Q ss_pred ccCceEEecCCCCCCChHHHHHHHc-----CCCEEEcCCCCccccccCCCceeeecccccccccCCCCcccccCCCHHHH
Q 043412 259 PAADVFVLPSRGEGWGRPLVEAMSM-----GLPVIATNWSGPTEYLTEENGYPLLVGRMSEVTEGPFKGHFWAEPSVDKL 333 (383)
Q Consensus 259 ~~adi~v~ps~~e~~~~~~~Ea~a~-----G~PvI~~~~~g~~e~v~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 333 (383)
..+|+++.-- .--+++.|+.. .+|++.-+.+|. -||+.+. +++++
T Consensus 38 ~~~D~vi~lG----GDGT~L~a~~~~~~~~~~pilgIn~~G~-------lGFL~~~-------------------~~~~~ 87 (264)
T PRK03501 38 KNANIIVSIG----GDGTFLQAVRKTGFREDCLYAGISTKDQ-------LGFYCDF-------------------HIDDL 87 (264)
T ss_pred CCccEEEEEC----CcHHHHHHHHHhcccCCCeEEeEecCCC-------CeEcccC-------------------CHHHH
Confidence 4578766322 22355666542 678888777443 3444332 78889
Q ss_pred HHHHHHHhcCH
Q 043412 334 RALMRLVVSNV 344 (383)
Q Consensus 334 a~~i~~ll~~~ 344 (383)
.+++.+++++.
T Consensus 88 ~~~l~~i~~g~ 98 (264)
T PRK03501 88 DKMIQAITKEE 98 (264)
T ss_pred HHHHHHHHcCC
Confidence 89998887744
No 313
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=21.80 E-value=2.9e+02 Score=23.62 Aligned_cols=58 Identities=10% Similarity=0.074 Sum_probs=37.1
Q ss_pred HHHHHHHHhhCCCC--Ccccccc-ccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCc
Q 043412 238 GNKIVNFVEDSDLE--KPDDGWA-PAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGP 295 (383)
Q Consensus 238 ~~~~~~~~~~~~~~--~~v~~~~-~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~ 295 (383)
.+..+++.+.++.. .++..++ ...|+++..+-...---...+++.+|+.|++-..+..
T Consensus 12 ~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~gAl 72 (229)
T TIGR03855 12 PKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSVGAL 72 (229)
T ss_pred HHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCccc
Confidence 34556666666542 4444444 5689888776544444467889999999999655443
No 314
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=21.70 E-value=1.4e+02 Score=24.80 Aligned_cols=68 Identities=18% Similarity=0.152 Sum_probs=38.3
Q ss_pred ChhHHHHHHHHHHHhcccCCCceeeeecCCCcccchh--hcCCChhh--------hh-HHHHHHhhhcCCCccEEEecC
Q 043412 9 GYSSESWSYILALNEHVKNPRFKLAIEHHGDLQSLQF--WEGLPHHM--------RN-LAVELYNTECRTNETVVICHS 76 (383)
Q Consensus 9 G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--------~~-~~~~l~~~~~~~~pDiV~~~~ 76 (383)
|-++....+.+.+.+.+....+.+.+..+.+..-..+ -.++|... .. .-..+.+.++..+||++++..
T Consensus 10 g~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~~ 88 (200)
T PRK05647 10 GNGSNLQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQPDLVVLAG 88 (200)
T ss_pred CCChhHHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhCcCEEEhHH
Confidence 4467777888888876544444444455433322212 22344321 01 123566778889999999874
No 315
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=21.51 E-value=6.9e+02 Score=23.58 Aligned_cols=88 Identities=15% Similarity=0.162 Sum_probs=50.1
Q ss_pred ccCHHHHHHHHHHHhcc-----CCCeEEEEEeCCCCC---CCchHHHHHHHHhhCCCCC--------cccccc--ccCce
Q 043412 202 RKGWDVLLKAYLEEFSK-----ADGVVLYLLTNPYHS---GRDFGNKIVNFVEDSDLEK--------PDDGWA--PAADV 263 (383)
Q Consensus 202 ~K~~~~ll~a~~~l~~~-----~~~~~l~i~G~~~~~---~~~~~~~~~~~~~~~~~~~--------~v~~~~--~~adi 263 (383)
..|.+..++++.+.... ..+-.+-++|..... ......+++++.+..|+.- .+..+. ..|.+
T Consensus 137 ~~G~~~a~~al~~~~~~~~~~~~~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~~~~~~~ei~~~~~A~l 216 (426)
T cd01972 137 RSGFDAAFHGILRHLVPPQDPTKQEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIAGGCSVEELERASEAAA 216 (426)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCE
Confidence 46888888777543321 112356667765321 1244588999999999862 122222 33344
Q ss_pred EEecCCCCCCChHHHHHH--HcCCCEEEcC
Q 043412 264 FVLPSRGEGWGRPLVEAM--SMGLPVIATN 291 (383)
Q Consensus 264 ~v~ps~~e~~~~~~~Ea~--a~G~PvI~~~ 291 (383)
-+..+.. ++..+.+.| -+|+|.+...
T Consensus 217 niv~~~~--~g~~~a~~Lee~~GiP~~~~~ 244 (426)
T cd01972 217 NVTLCLD--LGYYLGAALEQRFGVPEIKAP 244 (426)
T ss_pred EEEEChh--HHHHHHHHHHHHhCCCeEecC
Confidence 3333321 456677777 4899988654
No 316
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=21.50 E-value=5.5e+02 Score=22.37 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=21.8
Q ss_pred CCCCCh---HHHHHHHcCCCEEEcCCCCccc
Q 043412 270 GEGWGR---PLVEAMSMGLPVIATNWSGPTE 297 (383)
Q Consensus 270 ~e~~~~---~~~Ea~a~G~PvI~~~~~g~~e 297 (383)
...+|+ ..++|+.+|+-.|-+..+|+.+
T Consensus 197 Hn~~GlA~An~laAi~aG~~~iD~s~~GlG~ 227 (268)
T cd07940 197 HNDLGLAVANSLAAVEAGARQVECTINGIGE 227 (268)
T ss_pred cCCcchHHHHHHHHHHhCCCEEEEEeecccc
Confidence 344454 4789999999999999988764
No 317
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=21.45 E-value=94 Score=23.71 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=25.5
Q ss_pred ccccccCceEEecC--CCCCCC--hHHHHHHHcCCCEEEcCCCCccc
Q 043412 255 DGWAPAADVFVLPS--RGEGWG--RPLVEAMSMGLPVIATNWSGPTE 297 (383)
Q Consensus 255 ~~~~~~adi~v~ps--~~e~~~--~~~~Ea~a~G~PvI~~~~~g~~e 297 (383)
..++..||++|.-- .+--|. +-.-=|.|.|+|.|+-.......
T Consensus 67 ~~li~~aDvVVvrFGekYKQWNaAfDAg~a~AlgKplI~lh~~~~~H 113 (141)
T PF11071_consen 67 RTLIEKADVVVVRFGEKYKQWNAAFDAGYAAALGKPLITLHPEELHH 113 (141)
T ss_pred HHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhccc
Confidence 46778999887542 111121 11234678999999887654433
No 318
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=21.42 E-value=1.5e+02 Score=22.17 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=20.2
Q ss_pred hhhhHHHHHHhhhcCCCccEEEecCCCC
Q 043412 52 HMRNLAVELYNTECRTNETVVICHSEPG 79 (383)
Q Consensus 52 ~~~~~~~~l~~~~~~~~pDiV~~~~~~~ 79 (383)
........+.+++++.+||+|+++....
T Consensus 84 ~~~~~~~~l~~~i~~~~p~~V~t~~~~~ 111 (128)
T PF02585_consen 84 SWEELVRDLEDLIREFRPDVVFTPDPDD 111 (128)
T ss_dssp HHHHHHHHHHHHHHHH-ESEEEEE-STT
T ss_pred cHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 3455667788889999999999996543
No 319
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=21.42 E-value=86 Score=13.58 Aligned_cols=10 Identities=40% Similarity=0.637 Sum_probs=7.1
Q ss_pred HHHHHHHcCC
Q 043412 276 PLVEAMSMGL 285 (383)
Q Consensus 276 ~~~Ea~a~G~ 285 (383)
+++||+-.|.
T Consensus 5 sllealqtg~ 14 (15)
T PF06345_consen 5 SLLEALQTGS 14 (15)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHccC
Confidence 5778877764
No 320
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=21.09 E-value=5.2e+02 Score=22.95 Aligned_cols=99 Identities=14% Similarity=0.019 Sum_probs=56.3
Q ss_pred EEEEeeccccccCHHHHHHHHHHHhccC--CCeEEEEEeCCC--CCC----------CchHHHHHHHHhhCCCC------
Q 043412 192 VFLSVFKWEYRKGWDVLLKAYLEEFSKA--DGVVLYLLTNPY--HSG----------RDFGNKIVNFVEDSDLE------ 251 (383)
Q Consensus 192 ~i~~~g~~~~~K~~~~ll~a~~~l~~~~--~~~~l~i~G~~~--~~~----------~~~~~~~~~~~~~~~~~------ 251 (383)
.++..|- ....+.+.+++.++.+++.. -.+.+++-|.-. ++. ++-.+.+.+.-+++|+.
T Consensus 17 ~~lIAGP-C~iEs~e~~~~~A~~lk~~~~~~g~~~i~kgsfkKApRTSp~sFrG~G~eeGL~iL~~vk~~~glpvvTeV~ 95 (290)
T PLN03033 17 FFLLAGP-NVIESEEHILRMAKHIKDISTKLGLPLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKVAYDLPIVTDVH 95 (290)
T ss_pred eEEEecC-ChhcCHHHHHHHHHHHHHHHHhCCCcEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCceEEeeC
Confidence 3444442 33445566777776665531 256777776653 111 12224455556667775
Q ss_pred --CccccccccCceEEecCCCCCCChHH-HHHHHcCCCEEEcCC
Q 043412 252 --KPDDGWAPAADVFVLPSRGEGWGRPL-VEAMSMGLPVIATNW 292 (383)
Q Consensus 252 --~~v~~~~~~adi~v~ps~~e~~~~~~-~Ea~a~G~PvI~~~~ 292 (383)
+++.....-+|++-.|++.- ....+ .++...|+||..-.-
T Consensus 96 ~~~q~~~vae~~DilQIgAr~~-rqtdLL~a~~~tgkpV~lKkG 138 (290)
T PLN03033 96 ESSQCEAVGKVADIIQIPAFLC-RQTDLLVAAAKTGKIINIKKG 138 (290)
T ss_pred CHHHHHHHHhhCcEEeeCcHHH-HHHHHHHHHHccCCeEEeCCC
Confidence 33445556789999998631 12234 455567999988754
No 321
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=20.99 E-value=5.3e+02 Score=23.56 Aligned_cols=39 Identities=15% Similarity=0.020 Sum_probs=26.7
Q ss_pred cccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCC
Q 043412 254 DDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNW 292 (383)
Q Consensus 254 v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~ 292 (383)
...++..+|+++..+-.+..--....+..+|++||.+.-
T Consensus 72 ~~el~~~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~ 110 (341)
T PRK04207 72 IEDLLEKADIVVDATPGGVGAKNKELYEKAGVKAIFQGG 110 (341)
T ss_pred hhHhhccCCEEEECCCchhhHHHHHHHHHCCCEEEEcCC
Confidence 345557899998877544333345567788999988864
No 322
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=20.89 E-value=2.3e+02 Score=24.43 Aligned_cols=89 Identities=17% Similarity=0.121 Sum_probs=44.3
Q ss_pred ccCHHHHHHHHHHHhccCCCeEEEEEeCCCCCCCchHHHHHHHHhh---CCCCCccccccccCceEEe-cCCCCCCChHH
Q 043412 202 RKGWDVLLKAYLEEFSKADGVVLYLLTNPYHSGRDFGNKIVNFVED---SDLEKPDDGWAPAADVFVL-PSRGEGWGRPL 277 (383)
Q Consensus 202 ~K~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~adi~v~-ps~~e~~~~~~ 277 (383)
..|.+.+.++++..++..|+++|++-.-+..........+.++++. .|.. +..+.-.+++... |+. +.+--.+
T Consensus 99 ~~G~~~i~~af~~ar~~~P~a~l~~Ndy~~~~~~~k~~~~~~~v~~l~~~g~~--iDgiGlQ~H~~~~~~~~-~~~~~~l 175 (254)
T smart00633 99 ILGEDYIEKAFRYAREADPDAKLFYNDYNTEEPNAKRQAIYELVKKLKAKGVP--IDGIGLQSHLSLGSPNI-AEIRAAL 175 (254)
T ss_pred hcChHHHHHHHHHHHHhCCCCEEEEeccCCcCccHHHHHHHHHHHHHHHCCCc--cceeeeeeeecCCCCCH-HHHHHHH
Confidence 3456778888888888899999988543322111222333333333 3332 2222223333211 111 1111123
Q ss_pred HHHHHcCCCEEEcCCC
Q 043412 278 VEAMSMGLPVIATNWS 293 (383)
Q Consensus 278 ~Ea~a~G~PvI~~~~~ 293 (383)
-+-...|+||..|-..
T Consensus 176 ~~~~~~g~pi~iTE~d 191 (254)
T smart00633 176 DRFASLGLEIQITELD 191 (254)
T ss_pred HHHHHcCCceEEEEee
Confidence 3334459999998653
No 323
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=20.79 E-value=5.2e+02 Score=26.70 Aligned_cols=46 Identities=22% Similarity=0.116 Sum_probs=32.7
Q ss_pred ccccccccCceEEecCCCCCCChHHHHHHHcCCCEEEcCCCCccccc
Q 043412 253 PDDGWAPAADVFVLPSRGEGWGRPLVEAMSMGLPVIATNWSGPTEYL 299 (383)
Q Consensus 253 ~v~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~g~~e~v 299 (383)
.+...+..+|+++-.|....|.--+++.|+ ..|+|-.-....+|..
T Consensus 246 ~l~~~i~~~~v~iG~s~~g~~~~~~v~~M~-~~piifalsNP~~E~~ 291 (752)
T PRK07232 246 TLAEAIEGADVFLGLSAAGVLTPEMVKSMA-DNPIIFALANPDPEIT 291 (752)
T ss_pred CHHHHHcCCCEEEEcCCCCCCCHHHHHHhc-cCCEEEecCCCCccCC
Confidence 455666889999998876667778888887 4788766444445544
No 324
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=20.68 E-value=1.1e+02 Score=26.68 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=30.5
Q ss_pred HHHHHhhCCCCCccccccccCceEEecCCCC--CCChHHHHHHHcCCCEEEcCCCCc
Q 043412 241 IVNFVEDSDLEKPDDGWAPAADVFVLPSRGE--GWGRPLVEAMSMGLPVIATNWSGP 295 (383)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~adi~v~ps~~e--~~~~~~~Ea~a~G~PvI~~~~~g~ 295 (383)
-..+++++++ |++|.--..+ |+.-++--|+.+|+|||.-.-+..
T Consensus 189 n~al~~~~~i-----------~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~ 234 (256)
T TIGR00715 189 EKALLREYRI-----------DAVVTKASGEQGGELEKVKAAEALGINVIRIARPQT 234 (256)
T ss_pred HHHHHHHcCC-----------CEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCC
Confidence 3456666655 7777664443 445578888999999999887643
No 325
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=20.59 E-value=90 Score=27.60 Aligned_cols=69 Identities=16% Similarity=0.106 Sum_probs=40.8
Q ss_pred CChhHHHHHHHHHHHhcccCCCceeeeecCCCcccchhhcCCChhh--------hhHHHHHHhhhcCCCccEEEecC
Q 043412 8 GGYSSESWSYILALNEHVKNPRFKLAIEHHGDLQSLQFWEGLPHHM--------RNLAVELYNTECRTNETVVICHS 76 (383)
Q Consensus 8 ~G~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~pDiV~~~~ 76 (383)
+|-++-..++..+.+.......+.+.+..+.+......-.++|... ...-..+.+.+++++||+|++..
T Consensus 92 Sg~g~nl~~l~~~~~~g~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~~~~~~~~~e~~~~~~l~~~~~Dlivlag 168 (280)
T TIGR00655 92 SKEDHCLGDLLWRWYSGELDAEIALVISNHEDLRSLVERFGIPFHYIPATKDNRVEHEKRQLELLKQYQVDLVVLAK 168 (280)
T ss_pred cCCChhHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEcCCCCcchhhhHHHHHHHHHHhCCCEEEEeC
Confidence 3445666777777765443445666677666654332233444211 11234567788899999999984
No 326
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=20.26 E-value=1.3e+02 Score=23.78 Aligned_cols=84 Identities=13% Similarity=0.050 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhccC-CCeEEEEEeCCCCCCCchHHHHHHHHhhCCCCC-------c------------ccccc--ccCc
Q 043412 205 WDVLLKAYLEEFSKA-DGVVLYLLTNPYHSGRDFGNKIVNFVEDSDLEK-------P------------DDGWA--PAAD 262 (383)
Q Consensus 205 ~~~ll~a~~~l~~~~-~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~-------~------------v~~~~--~~ad 262 (383)
-..++.+..+|.++. ..+..+++|+. ....+.+++....+|... . +..++ ...|
T Consensus 17 ~~e~l~~A~~La~~~g~~v~av~~G~~----~~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~ 92 (164)
T PF01012_consen 17 SLEALEAARRLAEALGGEVTAVVLGPA----EEAAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPD 92 (164)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEEEETC----CCHHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-S
T ss_pred HHHHHHHHHHHHhhcCCeEEEEEEecc----hhhHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCC
Confidence 456777777887653 35777888842 255666676666666641 1 11222 4589
Q ss_pred eEEecCCCCCCChHHHHHHHcCCCEEEcCC
Q 043412 263 VFVLPSRGEGWGRPLVEAMSMGLPVIATNW 292 (383)
Q Consensus 263 i~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~ 292 (383)
++++|+...+-.+...=|...|.|+++--.
T Consensus 93 lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 93 LVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp EEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred EEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 999998766666777888888998887533
No 327
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=20.18 E-value=5.3e+02 Score=23.62 Aligned_cols=89 Identities=11% Similarity=0.062 Sum_probs=52.7
Q ss_pred EEEEEeeccccccCHHHHHHHHHHHhccCC-CeEEEEEeCCCCCCCchHHHHHHHHhhCCCC--CccccccccCce--EE
Q 043412 191 FVFLSVFKWEYRKGWDVLLKAYLEEFSKAD-GVVLYLLTNPYHSGRDFGNKIVNFVEDSDLE--KPDDGWAPAADV--FV 265 (383)
Q Consensus 191 ~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~-~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~adi--~v 265 (383)
+.++.+|. .- | ...++++.++ + +++++-+.+. ..+..++.++++|+. .++..++...|+ +.
T Consensus 4 ~rVgViG~-~~--G-~~h~~al~~~----~~~~eLvaV~d~------~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ 69 (343)
T TIGR01761 4 QSVVVCGT-RF--G-QFYLAAFAAA----PERFELAGILAQ------GSERSRALAHRLGVPLYCEVEELPDDIDIACVV 69 (343)
T ss_pred cEEEEEeH-HH--H-HHHHHHHHhC----CCCcEEEEEEcC------CHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEE
Confidence 34555664 11 2 2456666553 4 6788777653 245566677777753 566677765554 44
Q ss_pred ecCCC-CCC-ChHHHHHHHcCCCEEEcCCC
Q 043412 266 LPSRG-EGW-GRPLVEAMSMGLPVIATNWS 293 (383)
Q Consensus 266 ~ps~~-e~~-~~~~~Ea~a~G~PvI~~~~~ 293 (383)
.|+.. .+. .-...+|+..|+.|++=.--
T Consensus 70 ipt~~P~~~H~e~a~~aL~aGkHVL~EKPl 99 (343)
T TIGR01761 70 VRSAIVGGQGSALARALLARGIHVLQEHPL 99 (343)
T ss_pred eCCCCCCccHHHHHHHHHhCCCeEEEcCCC
Confidence 44321 122 23577899999999998653
No 328
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=20.14 E-value=3.4e+02 Score=24.63 Aligned_cols=21 Identities=14% Similarity=-0.013 Sum_probs=16.7
Q ss_pred CCChhHHHHHHHHHHHhcccC
Q 043412 7 GGGYSSESWSYILALNEHVKN 27 (383)
Q Consensus 7 ~~G~~~~~~~l~~~l~~~g~~ 27 (383)
++|-.-.+..+++.|.++|..
T Consensus 47 GTGKTP~v~~L~~~L~~~G~~ 67 (326)
T PF02606_consen 47 GTGKTPLVIWLARLLQARGYR 67 (326)
T ss_pred CCCchHHHHHHHHHHHhcCCc
Confidence 455556899999999999864
No 329
>PRK00865 glutamate racemase; Provisional
Probab=20.07 E-value=1.7e+02 Score=25.56 Aligned_cols=81 Identities=7% Similarity=-0.039 Sum_probs=41.0
Q ss_pred HHHHHhccCCCeEEEEEeCCCC---CCCchHHHHHHHHhhCCCCCccccccccCceEEecCCCCC-CChHHHHHHHcCCC
Q 043412 211 AYLEEFSKADGVVLYLLTNPYH---SGRDFGNKIVNFVEDSDLEKPDDGWAPAADVFVLPSRGEG-WGRPLVEAMSMGLP 286 (383)
Q Consensus 211 a~~~l~~~~~~~~l~i~G~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~adi~v~ps~~e~-~~~~~~Ea~a~G~P 286 (383)
.++++++..|+..++..|+... +. ...+++.+++.+.- +.+.. ..+|+++.+..+.. +.+..+.. ...+|
T Consensus 20 vl~~i~~~lp~~~~iY~~D~~~~PYG~-ks~~~i~~~~~~~~--~~L~~--~g~d~iVIaCNTa~~~~l~~lr~-~~~iP 93 (261)
T PRK00865 20 VLREIRRLLPDEHIIYVGDTARFPYGE-KSEEEIRERTLEIV--EFLLE--YGVKMLVIACNTASAVALPDLRE-RYDIP 93 (261)
T ss_pred HHHHHHHHCCCCCEEEEecCCCCCCCC-CCHHHHHHHHHHHH--HHHHh--CCCCEEEEeCchHHHHHHHHHHH-hCCCC
Confidence 4445555679999999998632 11 11233333332210 00011 46899988876433 23322322 23688
Q ss_pred EEEcCCCCcccc
Q 043412 287 VIATNWSGPTEY 298 (383)
Q Consensus 287 vI~~~~~g~~e~ 298 (383)
||. -..+....
T Consensus 94 vig-i~~a~~~a 104 (261)
T PRK00865 94 VVG-IVPAIKPA 104 (261)
T ss_pred EEe-eHHHHHHH
Confidence 888 44444443
Done!