BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043413
(185 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 60/101 (59%), Gaps = 4/101 (3%)
Query: 21 MAANYTVGGPNGGWDTAT--DLRTWATSQKFLVGDNLIFQYPSS-HDVTEVSKPDYDSCQ 77
MA + VG + GW T D WA+S KF VGD+L+F Y + H+V +V + + SC
Sbjct: 1 MATVHKVGD-STGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCN 59
Query: 78 TSNKIKSYTDGNTVIPLSSPGKRYFICGAPGHCTVGMKVGI 118
+S+ SYT G IPL PG YF+CG PGHC +G KV I
Sbjct: 60 SSSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEI 100
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 5/100 (5%)
Query: 23 ANYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQY-PSSHDVTEVSKPDYDSCQTSNK 81
A Y VGG +GGW T+ +W ++F GD L+F Y PS H+V V++ + +C T
Sbjct: 1 AVYVVGG-SGGWTFNTE--SWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAG 57
Query: 82 IKSYTDGNTVIPLSSPGKRYFICGAPGHCTVGMKVGIDTL 121
K YT G I L G+ YFIC PGHC GMK+ ++ L
Sbjct: 58 AKVYTSGRDQIKLPK-GQSYFICNFPGHCQSGMKIAVNAL 96
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 23 ANYTVGGPNGGWDTATDLR---TWATSQKFLVGDNLIFQYPSS-HDVTEVSKPDYDSCQT 78
+Y VGG + W +D + TWAT + F VGD L F + + HDV V+K +D+C+
Sbjct: 2 EDYDVGG-DMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKK 60
Query: 79 SNKIKSYTDGNTVIPLSSPGKRYFICGAPGHCTVGMKVGIDTL 121
N I T I L++ G +Y+IC HC VG K+ I+ +
Sbjct: 61 ENPISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINVV 103
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 44 ATSQKFLVGDNLIFQY-PSSHDVTEVSKPDYDSCQTSNKIKSYTDGNTVIPLSSPGKRYF 102
A + F GD L+F+Y H+V V+ Y SC ++Y+ G I L+ G+ YF
Sbjct: 14 ARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLTR-GQNYF 72
Query: 103 ICGAPGHCTVGMKVGIDT 120
IC PGHC GMK+ I+
Sbjct: 73 ICSFPGHCGGGMKIAINA 90
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 21 MAANYTVGGPNGGWDTATD---LRTWATSQKFLVGDNLIFQYPS-SHDVTEV-SKPDYDS 75
M + + G N GW + WA + F VGD+L F +P+ +H+V E+ +K +D+
Sbjct: 1 MQSTVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDA 60
Query: 76 CQTSNKIKSYTDGNTVIP-LSSPGKRYFICGAPGHCTVGMKVGIDTL 121
C N + VI L G YF+C HC+ G K+ I+ +
Sbjct: 61 CNFVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINVV 107
>pdb|1GVJ|A Chain A, Ets-1 Dna Binding And Autoinhibitory Domains
pdb|1GVJ|B Chain B, Ets-1 Dna Binding And Autoinhibitory Domains
Length = 146
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Query: 16 LIQLSMAANYTVGGPNGGWDTATDLRTWATSQKFL--VGDNLIFQYPSSHDVTEV----- 68
+I + A YT GP W +L T + Q F+ GD F+ +V
Sbjct: 25 VIPAAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRK 84
Query: 69 SKPDYDSCQTSNKIKSYTDGNTVIPLSSPGKRY---FIC 104
+KP + + S ++ Y D N + + GKRY F+C
Sbjct: 85 NKPKMNYEKLSRGLRYYYDKNII--HKTAGKRYVYRFVC 121
>pdb|1MD0|A Chain A, Crystal Structure Of An Inhibited Fragment Of Ets-1
pdb|1MD0|B Chain B, Crystal Structure Of An Inhibited Fragment Of Ets-1
Length = 141
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Query: 16 LIQLSMAANYTVGGPNGGWDTATDLRTWATSQKFL--VGDNLIFQYPSSHDVTEV----- 68
+I + A YT GP W +L T + Q F+ GD F+ +V
Sbjct: 21 VIPAAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRK 80
Query: 69 SKPDYDSCQTSNKIKSYTDGNTVIPLSSPGKRY---FIC 104
+KP + + S ++ Y D N + + GKRY F+C
Sbjct: 81 NKPKMNYEKLSRGLRYYYDKNII--HKTAGKRYVYRFVC 117
>pdb|1MDM|B Chain B, Inhibited Fragment Of Ets-1 And Paired Domain Of Pax5
Bound To Dna
Length = 161
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Query: 16 LIQLSMAANYTVGGPNGGWDTATDLRTWATSQKFL--VGDNLIFQYPSSHDVTEV----- 68
+I + A YT GP W +L T + Q F+ GD F+ +V
Sbjct: 41 VIPAAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRK 100
Query: 69 SKPDYDSCQTSNKIKSYTDGNTVIPLSSPGKRY---FIC 104
+KP + + S ++ Y D N + + GKRY F+C
Sbjct: 101 NKPKMNYEKLSRGLRYYYDKNII--HKTAGKRYVYRFVC 137
>pdb|3RI4|A Chain A, Ets1 Cooperative Binding To Widely Separated Sites On
Promoter Dna
pdb|3RI4|D Chain D, Ets1 Cooperative Binding To Widely Separated Sites On
Promoter Dna
Length = 163
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Query: 16 LIQLSMAANYTVGGPNGGWDTATDLRTWATSQKFL--VGDNLIFQYPSSHDVTEV----- 68
+I + A YT GP W +L T + Q F+ GD F+ +V
Sbjct: 42 VIPAAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRK 101
Query: 69 SKPDYDSCQTSNKIKSYTDGNTVIPLSSPGKRY---FIC 104
+KP + + S ++ Y D N + + GKRY F+C
Sbjct: 102 NKPKMNYEKLSRGLRYYYDKNII--HKTAGKRYVYRFVC 138
>pdb|3MFK|A Chain A, Ets1 Complex With Stromelysin-1 Promoter Dna
pdb|3MFK|B Chain B, Ets1 Complex With Stromelysin-1 Promoter Dna
Length = 162
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Query: 16 LIQLSMAANYTVGGPNGGWDTATDLRTWATSQKFL--VGDNLIFQYPSSHDVTEV----- 68
+I + A YT GP W +L T + Q F+ GD F+ +V
Sbjct: 41 VIPAAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRK 100
Query: 69 SKPDYDSCQTSNKIKSYTDGNTVIPLSSPGKRY---FIC 104
+KP + + S ++ Y D N + + GKRY F+C
Sbjct: 101 NKPKMNYEKLSRGLRYYYDKNII--HKTAGKRYVYRFVC 137
>pdb|2NNY|A Chain A, Crystal Structure Of The Ets1 Dimer Dna Complex.
pdb|2NNY|B Chain B, Crystal Structure Of The Ets1 Dimer Dna Complex
Length = 171
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 16 LIQLSMAANYTVGGPNGGWDTATDLRTWATSQKFL--VGDNLIFQYPSSHDV-----TEV 68
+I + A YT GP W +L T +SQ F+ GD F+ +V
Sbjct: 50 VIPAAALAGYTGSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRK 109
Query: 69 SKPDYDSCQTSNKIKSYTDGNTVIPLSSPGKRY 101
+KP + + S ++ Y D N + + GKRY
Sbjct: 110 NKPKMNYEKLSRGLRYYYDKNII--HKTAGKRY 140
>pdb|2STT|A Chain A, Solution Nmr Structure Of The Human Ets1DNA COMPLEX, 25
Structures
pdb|2STW|A Chain A, Solution Nmr Structure Of The Human Ets1DNA COMPLEX,
Restrained Regularized Mean Structure
Length = 96
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 23 ANYTVGGPNGGWDTATDLRTWATSQKFL--VGDNLIFQYPSSHDVTEV-----SKPDYDS 75
A YT GP W +L T + Q F+ GD F+ +V +KP +
Sbjct: 8 AGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNY 67
Query: 76 CQTSNKIKSYTDGNTVIPLSSPGKRY 101
+ S ++ Y D N + + GKRY
Sbjct: 68 EKLSRGLRYYYDKNII--HKTAGKRY 91
>pdb|1QHQ|A Chain A, Auracyanin, A Blue Copper Protein From The Green
Thermophilic Photosynthetic Bacterium Chloroflexus
Aurantiacus
pdb|1OV8|A Chain A, Auracyanin B Structure In Space Group, P65
pdb|1OV8|B Chain B, Auracyanin B Structure In Space Group, P65
pdb|1OV8|C Chain C, Auracyanin B Structure In Space Group, P65
pdb|1OV8|D Chain D, Auracyanin B Structure In Space Group, P65
Length = 140
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 96 SPGKRYFICGAPGHCTVGMK 115
+PG +IC PGH GMK
Sbjct: 114 APGTYLYICTFPGHYLAGMK 133
>pdb|1R36|A Chain A, Nmr-Based Structure Of Autoinhibited Murine Ets-1
Deltan301
Length = 140
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 16 LIQLSMAANYTVGGPNGGWDTATDLRTWATSQKFL--VGDNLIFQYPSSHDVTEV----- 68
+I + A YT GP W +L T + Q F+ GD F+ +V
Sbjct: 20 VIPAAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRK 79
Query: 69 SKPDYDSCQTSNKIKSYTDGNTVIPLSSPGKRY 101
+KP + + S ++ Y D N + + GKRY
Sbjct: 80 NKPKMNYEKLSRGLRYYYDKNII--HKTAGKRY 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,784,634
Number of Sequences: 62578
Number of extensions: 140357
Number of successful extensions: 328
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 316
Number of HSP's gapped (non-prelim): 14
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)