Query 043413
Match_columns 185
No_of_seqs 145 out of 918
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 04:48:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043413.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043413hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 5E-42 1.1E-46 279.1 13.7 110 11-122 9-119 (167)
2 PF02298 Cu_bind_like: Plastoc 100.0 1.1E-31 2.5E-36 196.4 3.6 81 34-114 1-85 (85)
3 PRK02710 plastocyanin; Provisi 99.0 3.6E-09 7.8E-14 81.3 11.4 85 24-121 32-119 (119)
4 TIGR02656 cyanin_plasto plasto 98.9 6.3E-09 1.4E-13 77.3 8.7 90 24-121 2-99 (99)
5 PF00127 Copper-bind: Copper b 98.9 5.6E-09 1.2E-13 77.4 6.5 75 45-121 17-99 (99)
6 TIGR03102 halo_cynanin halocya 98.8 2.1E-08 4.5E-13 77.5 9.1 88 21-121 22-115 (115)
7 COG3794 PetE Plastocyanin [Ene 98.6 2.1E-07 4.6E-12 73.3 9.2 84 25-122 40-128 (128)
8 TIGR02375 pseudoazurin pseudoa 98.5 5.9E-07 1.3E-11 69.5 8.4 75 44-123 14-89 (116)
9 TIGR02657 amicyanin amicyanin. 98.3 4.1E-06 8.8E-11 60.3 7.7 70 45-121 11-83 (83)
10 TIGR03095 rusti_cyanin rusticy 97.6 0.00023 5E-09 57.0 7.2 72 47-121 54-148 (148)
11 PF13473 Cupredoxin_1: Cupredo 97.2 0.00024 5.2E-09 52.7 2.8 63 45-120 35-104 (104)
12 PF06525 SoxE: Sulfocyanin (So 97.0 0.0031 6.8E-08 53.1 8.0 77 49-125 90-190 (196)
13 TIGR03096 nitroso_cyanin nitro 97.0 0.0019 4.1E-08 51.5 5.9 64 38-112 54-124 (135)
14 COG4454 Uncharacterized copper 96.5 0.036 7.9E-07 45.2 9.8 79 44-122 62-158 (158)
15 TIGR03094 sulfo_cyanin sulfocy 96.2 0.027 5.9E-07 47.2 7.9 34 92-125 156-189 (195)
16 TIGR02695 azurin azurin. Azuri 95.9 0.048 1E-06 43.0 7.7 87 25-119 3-124 (125)
17 KOG3858 Ephrin, ligand for Eph 95.0 0.15 3.2E-06 44.1 8.2 77 48-125 46-164 (233)
18 PF00116 COX2: Cytochrome C ox 94.7 0.058 1.3E-06 41.6 4.6 66 45-121 46-120 (120)
19 PRK02888 nitrous-oxide reducta 94.6 0.11 2.4E-06 50.6 7.2 67 45-122 555-634 (635)
20 TIGR02866 CoxB cytochrome c ox 94.2 0.089 1.9E-06 43.7 5.0 67 46-123 118-193 (201)
21 PF00812 Ephrin: Ephrin; Inte 93.6 0.094 2E-06 42.2 3.9 75 47-121 24-144 (145)
22 COG1622 CyoA Heme/copper-type 92.1 0.38 8.2E-06 41.8 5.8 71 47-125 139-215 (247)
23 PRK10378 inactive ferrous ion 91.9 1.7 3.7E-05 40.0 10.0 29 91-124 91-119 (375)
24 PLN02354 copper ion binding / 91.8 1.3 2.9E-05 42.4 9.6 71 47-124 60-148 (552)
25 TIGR02376 Cu_nitrite_red nitri 91.5 0.6 1.3E-05 41.4 6.6 75 47-124 61-148 (311)
26 PLN02604 oxidoreductase 91.4 1.2 2.6E-05 42.7 8.9 78 45-124 55-146 (566)
27 MTH00047 COX2 cytochrome c oxi 89.9 1 2.2E-05 37.7 6.2 66 48-124 119-193 (194)
28 PF07732 Cu-oxidase_3: Multico 89.7 0.18 3.9E-06 38.6 1.4 77 46-123 27-116 (117)
29 PLN02191 L-ascorbate oxidase 84.4 4.4 9.6E-05 39.0 7.9 34 91-124 112-145 (574)
30 TIGR01433 CyoA cytochrome o ub 83.7 4.6 0.0001 34.5 6.9 67 46-123 140-215 (226)
31 MTH00129 COX2 cytochrome c oxi 80.9 10 0.00022 32.5 7.9 31 91-123 183-216 (230)
32 PF07172 GRP: Glycine rich pro 79.0 1.3 2.8E-05 33.2 1.7 12 1-12 1-12 (95)
33 TIGR01480 copper_res_A copper- 78.9 8.6 0.00019 37.3 7.7 83 34-121 488-587 (587)
34 PLN02835 oxidoreductase 78.8 14 0.0003 35.4 9.0 74 47-123 62-149 (539)
35 MTH00140 COX2 cytochrome c oxi 78.2 7.5 0.00016 33.0 6.4 31 91-123 183-216 (228)
36 MTH00154 COX2 cytochrome c oxi 77.6 15 0.00032 31.4 8.0 30 91-122 183-215 (227)
37 TIGR03388 ascorbase L-ascorbat 77.2 4.4 9.6E-05 38.5 5.2 34 91-124 90-123 (541)
38 PTZ00047 cytochrome c oxidase 76.5 9.4 0.0002 31.4 6.2 30 91-122 116-148 (162)
39 PLN02991 oxidoreductase 76.2 17 0.00036 35.1 8.7 75 47-124 61-149 (543)
40 MTH00168 COX2 cytochrome c oxi 75.7 17 0.00036 30.9 7.8 31 91-123 183-216 (225)
41 MTH00139 COX2 cytochrome c oxi 75.1 17 0.00038 30.7 7.7 31 91-123 183-216 (226)
42 TIGR01432 QOXA cytochrome aa3 74.4 16 0.00034 30.8 7.2 66 47-123 132-206 (217)
43 PLN00044 multi-copper oxidase- 74.1 9.6 0.00021 37.1 6.6 72 47-125 62-151 (596)
44 MTH00023 COX2 cytochrome c oxi 73.5 14 0.0003 31.8 6.8 31 91-123 194-227 (240)
45 PF02839 CBM_5_12: Carbohydrat 71.5 2.8 6E-05 25.9 1.5 19 40-58 1-19 (41)
46 PRK11372 lysozyme inhibitor; P 69.8 37 0.00081 25.8 7.7 17 52-68 50-67 (109)
47 MTH00098 COX2 cytochrome c oxi 69.5 25 0.00053 30.0 7.4 30 91-122 183-215 (227)
48 MTH00076 COX2 cytochrome c oxi 69.3 26 0.00057 29.8 7.6 30 91-122 183-215 (228)
49 PRK10525 cytochrome o ubiquino 69.2 20 0.00043 32.4 7.0 66 46-122 152-226 (315)
50 PF10731 Anophelin: Thrombin i 68.8 3.9 8.4E-05 28.6 1.9 29 1-29 1-29 (65)
51 MTH00117 COX2 cytochrome c oxi 68.8 21 0.00046 30.4 6.8 31 91-123 183-216 (227)
52 TIGR02228 sigpep_I_arch signal 67.5 22 0.00047 28.7 6.3 24 47-70 59-87 (158)
53 MTH00051 COX2 cytochrome c oxi 67.1 13 0.00028 31.8 5.3 31 91-123 187-220 (234)
54 PLN02168 copper ion binding / 62.9 25 0.00055 33.8 6.9 77 46-125 58-148 (545)
55 TIGR01480 copper_res_A copper- 62.4 32 0.0007 33.4 7.5 75 46-123 77-163 (587)
56 MTH00027 COX2 cytochrome c oxi 61.7 79 0.0017 27.7 9.2 31 91-123 217-250 (262)
57 MTH00038 COX2 cytochrome c oxi 60.2 12 0.00026 31.9 3.8 31 91-123 183-216 (229)
58 PF05382 Amidase_5: Bacterioph 59.7 25 0.00053 28.3 5.3 34 47-80 74-113 (145)
59 TIGR03511 GldH_lipo gliding mo 59.5 29 0.00062 28.1 5.7 27 9-37 10-41 (156)
60 MTH00185 COX2 cytochrome c oxi 58.2 52 0.0011 28.1 7.3 30 91-122 183-215 (230)
61 PLN02792 oxidoreductase 56.8 27 0.00059 33.5 5.9 70 47-123 49-136 (536)
62 PRK12407 flgH flagellar basal 55.6 18 0.00039 31.0 4.1 27 34-60 50-76 (221)
63 TIGR03389 laccase laccase, pla 55.6 30 0.00065 32.9 6.0 75 47-125 36-125 (539)
64 MTH00008 COX2 cytochrome c oxi 53.7 16 0.00035 31.2 3.5 31 91-123 183-216 (228)
65 cd06555 ASCH_PF0470_like ASC-1 47.9 15 0.00033 28.2 2.2 29 47-75 30-61 (109)
66 KOG2315 Predicted translation 46.7 32 0.0007 33.4 4.6 61 44-104 210-277 (566)
67 PF02362 B3: B3 DNA binding do 46.4 8.5 0.00018 27.3 0.6 19 44-62 69-87 (100)
68 KOG1923 Rac1 GTPase effector F 46.0 65 0.0014 32.7 6.7 13 131-143 279-291 (830)
69 PLN00115 pollen allergen group 46.0 34 0.00073 26.6 3.9 29 1-29 1-32 (118)
70 TIGR01165 cbiN cobalt transpor 45.6 19 0.0004 27.0 2.3 10 37-46 48-57 (91)
71 PRK11528 hypothetical protein; 44.6 33 0.00072 29.9 4.1 36 32-67 26-70 (254)
72 PRK09723 putative fimbrial-lik 43.5 2.8E+02 0.006 26.3 10.1 15 18-33 23-37 (421)
73 PF08980 DUF1883: Domain of un 42.6 6.2 0.00013 29.7 -0.6 73 47-121 9-86 (94)
74 PF12195 End_beta_barrel: Beta 41.7 15 0.00032 26.9 1.2 28 47-74 26-60 (83)
75 CHL00082 psbZ photosystem II p 41.4 28 0.00061 24.3 2.5 36 1-37 1-36 (62)
76 PF12961 DUF3850: Domain of Un 41.0 15 0.00033 26.3 1.2 13 46-58 26-38 (72)
77 PRK02576 psbZ photosystem II r 40.5 29 0.00062 24.3 2.4 35 1-36 1-35 (62)
78 PRK14125 cell division suppres 39.8 16 0.00035 27.5 1.2 8 48-55 40-47 (103)
79 PF08139 LPAM_1: Prokaryotic m 39.8 34 0.00074 19.7 2.3 17 4-20 8-24 (25)
80 KOG1263 Multicopper oxidases [ 39.6 99 0.0021 30.1 6.8 71 47-125 61-150 (563)
81 MTH00080 COX2 cytochrome c oxi 39.2 37 0.0008 29.1 3.5 31 91-123 186-219 (231)
82 PF08194 DIM: DIM protein; In 38.3 49 0.0011 20.7 3.0 29 1-29 1-30 (36)
83 PLN02792 oxidoreductase 38.2 1.6E+02 0.0034 28.4 7.9 35 91-125 474-508 (536)
84 PRK13838 conjugal transfer pil 37.5 13 0.00029 30.5 0.5 16 46-61 48-63 (176)
85 PF06462 Hyd_WA: Propeller; I 36.8 61 0.0013 19.2 3.2 26 90-115 2-27 (32)
86 PF10670 DUF4198: Domain of un 36.6 1.3E+02 0.0029 23.9 6.2 57 48-104 146-209 (215)
87 PRK10883 FtsI repressor; Provi 36.5 1.3E+02 0.0029 28.2 7.0 74 46-125 78-168 (471)
88 PF06291 Lambda_Bor: Bor prote 36.2 44 0.00095 25.2 3.1 24 5-29 3-26 (97)
89 PF10377 ATG11: Autophagy-rela 36.1 22 0.00048 27.8 1.5 18 47-64 41-58 (129)
90 KOG3342 Signal peptidase I [In 35.7 13 0.00029 30.7 0.2 21 48-68 77-102 (180)
91 cd05810 CBM20_alpha_MTH Glucan 35.7 38 0.00083 24.7 2.7 37 24-60 18-63 (97)
92 PF00686 CBM_20: Starch bindin 35.6 47 0.001 23.8 3.1 38 24-61 18-68 (96)
93 PRK12701 flgH flagellar basal 35.0 65 0.0014 27.8 4.3 27 34-60 54-80 (230)
94 smart00495 ChtBD3 Chitin-bindi 34.3 25 0.00055 21.5 1.3 18 40-57 1-18 (41)
95 PF02157 Man-6-P_recep: Mannos 32.4 15 0.00032 32.7 0.0 39 22-62 210-248 (278)
96 KOG0559 Dihydrolipoamide succi 32.1 3.9E+02 0.0084 25.2 9.0 24 98-121 124-148 (457)
97 cd05762 Ig8_MLCK Eighth immuno 31.9 1.9E+02 0.0041 20.6 6.3 79 44-125 7-95 (98)
98 COG0234 GroS Co-chaperonin Gro 30.1 1E+02 0.0023 23.3 4.2 27 47-74 57-83 (96)
99 cd02859 AMPKbeta_GBD_like AMP- 28.4 1.6E+02 0.0035 20.5 4.8 46 54-103 3-51 (79)
100 cd05808 CBM20_alpha_amylase Al 27.4 57 0.0012 23.0 2.4 37 24-60 17-62 (95)
101 PRK12696 flgH flagellar basal 27.2 88 0.0019 27.1 3.9 19 42-60 59-77 (236)
102 PF14801 GCD14_N: tRNA methylt 27.0 42 0.0009 22.9 1.4 28 47-74 4-33 (54)
103 COG4043 Preprotein translocase 26.9 26 0.00057 26.9 0.5 16 44-59 29-44 (111)
104 PF00394 Cu-oxidase: Multicopp 26.6 73 0.0016 24.9 3.0 31 91-121 121-156 (159)
105 PRK12698 flgH flagellar basal 26.3 94 0.002 26.6 3.8 27 34-60 49-75 (224)
106 PLN02991 oxidoreductase 25.9 3.9E+02 0.0084 25.8 8.3 35 91-125 481-515 (543)
107 TIGR03388 ascorbase L-ascorbat 25.8 2.9E+02 0.0063 26.3 7.4 32 91-122 494-525 (541)
108 KOG3006 Transthyretin and rela 25.5 2.4E+02 0.0052 22.4 5.6 10 1-10 1-10 (132)
109 PF09451 ATG27: Autophagy-rela 25.5 60 0.0013 28.1 2.5 25 20-45 221-245 (268)
110 PF09792 But2: Ubiquitin 3 bin 25.5 94 0.002 24.7 3.5 32 91-125 100-131 (143)
111 PF11153 DUF2931: Protein of u 25.4 87 0.0019 25.9 3.4 53 6-59 3-59 (216)
112 PF07731 Cu-oxidase_2: Multico 24.6 28 0.00061 26.1 0.3 32 91-122 105-136 (138)
113 PLN02835 oxidoreductase 24.5 4.1E+02 0.0089 25.5 8.2 35 91-125 482-516 (539)
114 PF11604 CusF_Ec: Copper bindi 24.3 34 0.00075 23.7 0.7 21 42-62 36-56 (70)
115 KOG1546 Metacaspase involved i 23.9 43 0.00094 30.8 1.4 13 49-61 135-147 (362)
116 PRK10861 signal peptidase I; P 23.6 2.5E+02 0.0054 25.4 6.2 16 47-62 124-139 (324)
117 PF11008 DUF2846: Protein of u 23.6 2.4E+02 0.0051 21.0 5.3 28 45-72 41-69 (117)
118 PRK10965 multicopper oxidase; 23.5 1.6E+02 0.0035 28.1 5.2 72 47-125 79-168 (523)
119 PF12791 RsgI_N: Anti-sigma fa 23.1 1.9E+02 0.0041 18.6 4.1 35 87-122 4-38 (56)
120 PF12115 Salp15: Salivary prot 23.0 8.1 0.00017 29.6 -3.0 73 36-113 32-109 (118)
121 COG1430 Uncharacterized conser 22.6 44 0.00096 26.3 1.1 20 42-61 104-123 (126)
122 KOG3416 Predicted nucleic acid 22.5 87 0.0019 25.0 2.7 30 25-58 41-71 (134)
123 cd05816 CBM20_DPE2_repeat2 Dis 22.4 98 0.0021 22.4 2.9 37 24-60 17-63 (99)
124 PRK10871 nlpD lipoprotein NlpD 22.4 1E+02 0.0022 28.0 3.4 11 46-56 62-72 (319)
125 PF04225 OapA: Opacity-associa 22.2 88 0.0019 22.5 2.5 22 47-68 41-62 (85)
126 PRK01904 hypothetical protein; 21.6 1.5E+02 0.0033 24.9 4.2 9 53-61 59-67 (219)
127 COG4704 Uncharacterized protei 21.6 66 0.0014 26.1 1.9 12 50-61 72-83 (151)
128 PF01345 DUF11: Domain of unkn 21.6 63 0.0014 22.0 1.6 21 40-60 28-48 (76)
129 COG3627 PhnJ Uncharacterized e 21.3 93 0.002 27.2 2.8 23 91-113 258-280 (291)
130 PF14326 DUF4384: Domain of un 21.3 89 0.0019 21.9 2.4 15 48-62 2-16 (83)
131 PF11896 DUF3416: Domain of un 20.8 1.3E+02 0.0029 25.0 3.6 55 48-103 22-85 (187)
132 KOG1263 Multicopper oxidases [ 20.7 1.8E+02 0.0039 28.4 4.9 35 91-125 506-540 (563)
133 TIGR00849 gutA PTS system, glu 20.6 1.2E+02 0.0026 23.6 3.1 68 48-119 51-119 (121)
134 cd05820 CBM20_novamyl Novamyl 20.5 92 0.002 22.8 2.4 38 24-61 21-70 (103)
135 COG4446 Uncharacterized protei 20.5 78 0.0017 25.3 2.0 24 45-68 88-111 (141)
136 PF02933 CDC48_2: Cell divisio 20.5 1.3E+02 0.0027 20.1 2.9 18 45-62 15-32 (64)
137 TIGR03390 ascorbOXfungal L-asc 20.1 86 0.0019 29.9 2.7 34 91-124 502-535 (538)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=5e-42 Score=279.11 Aligned_cols=110 Identities=35% Similarity=0.678 Sum_probs=102.3
Q ss_pred HHHHHHhhhcceeEEEEcCCCCCCCCCCCccccccCCeEecCCeeeeeecCC-CcEEEEcCcCcccccCCCCccccCCCC
Q 043413 11 AATAVLIQLSMAANYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSS-HDVTEVSKPDYDSCQTSNKIKSYTDGN 89 (185)
Q Consensus 11 ~~~all~~~a~A~~~~VGg~~~GW~~~~~Y~~Was~~~f~vGDtLvF~y~~~-H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~ 89 (185)
++++++...+.|++|+||| +.||+.+.||++|+++++|++||+|+|+|+.+ |||+||++++|++|+.++++..+++|+
T Consensus 9 ~~~~~~~~~~~a~~~~VGd-~~GW~~~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~ 87 (167)
T PLN03148 9 FFALFSASATTATDHIVGA-NKGWNPGINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGK 87 (167)
T ss_pred HHHHHhhhhccceEEEeCC-CCCcCCCCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCC
Confidence 3344556678899999999 89999989999999999999999999999998 999999999999999999999999999
Q ss_pred cEEecCCCcceeEEcCCCCCCCCCCEEEEEecC
Q 043413 90 TVIPLSSPGKRYFICGAPGHCTVGMKVGIDTLA 122 (185)
Q Consensus 90 ~~v~L~~~G~~YFiC~~~~HC~~GmKl~I~V~~ 122 (185)
+.|+|+++|+|||||+ .+||++||||.|+|.+
T Consensus 88 d~v~L~~~G~~YFIcg-~ghC~~GmKl~I~V~~ 119 (167)
T PLN03148 88 DFIPLNKAKRYYFICG-NGQCFNGMKVTILVHP 119 (167)
T ss_pred cEEEecCCccEEEEcC-CCccccCCEEEEEEcC
Confidence 9999999999999999 5899999999999964
No 2
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.97 E-value=1.1e-31 Score=196.35 Aligned_cols=81 Identities=52% Similarity=1.089 Sum_probs=67.5
Q ss_pred CCCCC---CccccccCCeEecCCeeeeeecCC-CcEEEEcCcCcccccCCCCccccCCCCcEEecCCCcceeEEcCCCCC
Q 043413 34 WDTAT---DLRTWATSQKFLVGDNLIFQYPSS-HDVTEVSKPDYDSCQTSNKIKSYTDGNTVIPLSSPGKRYFICGAPGH 109 (185)
Q Consensus 34 W~~~~---~Y~~Was~~~f~vGDtLvF~y~~~-H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~~~v~L~~~G~~YFiC~~~~H 109 (185)
|+.+. +|++||++++|++||+|+|+|+.+ |+|+||++++|+.|+.++++..+.+|++.|+|+++|.+||||++++|
T Consensus 1 W~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~H 80 (85)
T PF02298_consen 1 WTIPTNASNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVPGH 80 (85)
T ss_dssp SSSSSSTTHHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--STTT
T ss_pred CccCCCccchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCCCc
Confidence 77665 899999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 043413 110 CTVGM 114 (185)
Q Consensus 110 C~~Gm 114 (185)
|+.||
T Consensus 81 C~~Gq 85 (85)
T PF02298_consen 81 CQKGQ 85 (85)
T ss_dssp TTTT-
T ss_pred ccccC
Confidence 99998
No 3
>PRK02710 plastocyanin; Provisional
Probab=99.04 E-value=3.6e-09 Score=81.32 Aligned_cols=85 Identities=16% Similarity=0.238 Sum_probs=57.2
Q ss_pred EEEEcCCCCCCCCCCCccccccCCeEecCCeeeeeecCC--CcEEEEcCcCcccccCCCCccccCCCC-cEEecCCCcce
Q 043413 24 NYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSS--HDVTEVSKPDYDSCQTSNKIKSYTDGN-TVIPLSSPGKR 100 (185)
Q Consensus 24 ~~~VGg~~~GW~~~~~Y~~Was~~~f~vGDtLvF~y~~~--H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~-~~v~L~~~G~~ 100 (185)
++.+|. ++|+ |.-..+..++++||+|.|.+++. ||++.-.. +.....+ .....|. ..++++++|.|
T Consensus 32 ~V~~~~-~~~~-----~~F~P~~i~v~~Gd~V~~~N~~~~~H~v~~~~~---~~~~~~~--~~~~pg~t~~~tF~~~G~y 100 (119)
T PRK02710 32 EVKMGS-DAGM-----LAFEPSTLTIKAGDTVKWVNNKLAPHNAVFDGA---KELSHKD--LAFAPGESWEETFSEAGTY 100 (119)
T ss_pred EEEEcc-CCCe-----eEEeCCEEEEcCCCEEEEEECCCCCceEEecCC---ccccccc--cccCCCCEEEEEecCCEEE
Confidence 455666 4443 22234778999999999998654 99864211 1111111 1233443 47889999999
Q ss_pred eEEcCCCCCCCCCCEEEEEec
Q 043413 101 YFICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 101 YFiC~~~~HC~~GmKl~I~V~ 121 (185)
.|+|. .|=+.||+..|+|.
T Consensus 101 ~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 101 TYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred EEEcC--CCccCCcEEEEEEC
Confidence 99999 59889999999984
No 4
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.93 E-value=6.3e-09 Score=77.30 Aligned_cols=90 Identities=20% Similarity=0.231 Sum_probs=60.2
Q ss_pred EEEEcCCCCCCCCCCCccccccCCeEecCCeeeeeecCC--CcEEEEcCcC-----cccccCCCCccccCCCCc-EEecC
Q 043413 24 NYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSS--HDVTEVSKPD-----YDSCQTSNKIKSYTDGNT-VIPLS 95 (185)
Q Consensus 24 ~~~VGg~~~GW~~~~~Y~~Was~~~f~vGDtLvF~y~~~--H~Vv~Vs~~~-----Yd~C~~s~~~~~~s~G~~-~v~L~ 95 (185)
++.||..+.+..|.+ +..++++||+|+|.++.. |+|+..+... ...............|.+ .++++
T Consensus 2 ~v~~g~~~g~~~F~P------~~i~v~~G~~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~ 75 (99)
T TIGR02656 2 TVKMGADKGALVFEP------AKISIAAGDTVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFS 75 (99)
T ss_pred EEEEecCCCceeEeC------CEEEECCCCEEEEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeC
Confidence 567776234455543 678999999999998765 9997653210 000111101112234543 78888
Q ss_pred CCcceeEEcCCCCCCCCCCEEEEEec
Q 043413 96 SPGKRYFICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 96 ~~G~~YFiC~~~~HC~~GmKl~I~V~ 121 (185)
.+|.|.|+|. +|++.||+..|.|.
T Consensus 76 ~~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 76 TPGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred CCEEEEEEcC--CccccCCEEEEEEC
Confidence 9999999999 79999999999984
No 5
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.87 E-value=5.6e-09 Score=77.40 Aligned_cols=75 Identities=23% Similarity=0.311 Sum_probs=53.6
Q ss_pred cCCeEecCCeeeeeecCC--CcEEEEcCcC--cccccCCC---CccccCCCCc-EEecCCCcceeEEcCCCCCCCCCCEE
Q 043413 45 TSQKFLVGDNLIFQYPSS--HDVTEVSKPD--YDSCQTSN---KIKSYTDGNT-VIPLSSPGKRYFICGAPGHCTVGMKV 116 (185)
Q Consensus 45 s~~~f~vGDtLvF~y~~~--H~Vv~Vs~~~--Yd~C~~s~---~~~~~s~G~~-~v~L~~~G~~YFiC~~~~HC~~GmKl 116 (185)
+..++++||+|.|.++.. |||+...... -..+.... .......|.+ .++++++|.|.|+|. + |...||+.
T Consensus 17 ~~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~G 94 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMVG 94 (99)
T ss_dssp SEEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSEE
T ss_pred CEEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCEE
Confidence 668999999999999644 9999885210 11121111 1122345554 778889999999999 7 99999999
Q ss_pred EEEec
Q 043413 117 GIDTL 121 (185)
Q Consensus 117 ~I~V~ 121 (185)
.|.|.
T Consensus 95 ~i~V~ 99 (99)
T PF00127_consen 95 TIIVE 99 (99)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99984
No 6
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=98.85 E-value=2.1e-08 Score=77.51 Aligned_cols=88 Identities=19% Similarity=0.386 Sum_probs=61.9
Q ss_pred ceeEEEEc--CCCCCCCCCCCccccccCCeEecCCeeeeeecC--C-CcEEEEcCcCcccccCCCCccccCCC-CcEEec
Q 043413 21 MAANYTVG--GPNGGWDTATDLRTWATSQKFLVGDNLIFQYPS--S-HDVTEVSKPDYDSCQTSNKIKSYTDG-NTVIPL 94 (185)
Q Consensus 21 ~A~~~~VG--g~~~GW~~~~~Y~~Was~~~f~vGDtLvF~y~~--~-H~Vv~Vs~~~Yd~C~~s~~~~~~s~G-~~~v~L 94 (185)
...++.|| +.+.+..|.+ +..++++||+|+|+|+. . |||.......|+. .......| ...++|
T Consensus 22 ~~~~v~~G~~~~~g~~~F~P------~~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s-----~~~~~~~G~t~s~Tf 90 (115)
T TIGR03102 22 DEVTVDVGAEANGGGFAFDP------PAIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE-----SERVSEEGTTYEHTF 90 (115)
T ss_pred ceEEEEecccCCCCceeEeC------CEEEECCCCEEEEEECCCCCCEEEEECCCCCccc-----cccccCCCCEEEEEe
Confidence 45678898 3122355543 66899999999999864 3 9997643334441 11122334 458999
Q ss_pred CCCcceeEEcCCCCCCCCCCEEEEEec
Q 043413 95 SSPGKRYFICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 95 ~~~G~~YFiC~~~~HC~~GmKl~I~V~ 121 (185)
+++|.|.|+|.. |=..|||..|.|.
T Consensus 91 ~~~G~Y~Y~C~p--H~~~gM~G~I~V~ 115 (115)
T TIGR03102 91 EEPGIYLYVCVP--HEALGMKGAVVVE 115 (115)
T ss_pred cCCcEEEEEccC--CCCCCCEEEEEEC
Confidence 999999999998 8667999999984
No 7
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=98.64 E-value=2.1e-07 Score=73.27 Aligned_cols=84 Identities=23% Similarity=0.273 Sum_probs=59.6
Q ss_pred EEEcCCCCCCCCCCCccccccCCeEecCCeeeeeecCC--CcEEEEcCcCcccccCCCCccccCCC--C-cEEecCCCcc
Q 043413 25 YTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSS--HDVTEVSKPDYDSCQTSNKIKSYTDG--N-TVIPLSSPGK 99 (185)
Q Consensus 25 ~~VGg~~~GW~~~~~Y~~Was~~~f~vGDtLvF~y~~~--H~Vv~Vs~~~Yd~C~~s~~~~~~s~G--~-~~v~L~~~G~ 99 (185)
..++.......|.+ +..++.+||+|.|.|.+. |||.-+...+. .....+..+ . .+++++++|.
T Consensus 40 ~~~~~~~~~~vF~P------A~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~~------~g~~~~~~~~~~s~~~Tfe~~G~ 107 (128)
T COG3794 40 VNKGVDIGAMVFEP------AEVTVKPGDTVTWVNTDSVGHNVTAVGGMDP------EGSGTLKAGINESFTHTFETPGE 107 (128)
T ss_pred eeeeccCcceeEcC------cEEEECCCCEEEEEECCCCCceEEEeCCCCc------ccccccccCCCcceEEEecccce
Confidence 34444133455654 778999999999999877 99988744411 111122222 2 3788999999
Q ss_pred eeEEcCCCCCCCCCCEEEEEecC
Q 043413 100 RYFICGAPGHCTVGMKVGIDTLA 122 (185)
Q Consensus 100 ~YFiC~~~~HC~~GmKl~I~V~~ 122 (185)
|.|+|.. |=..|||..|.|..
T Consensus 108 Y~Y~C~P--H~~~gM~G~IvV~~ 128 (128)
T COG3794 108 YTYYCTP--HPGMGMKGKIVVGE 128 (128)
T ss_pred EEEEecc--CCCCCcEEEEEeCC
Confidence 9999999 98889999999953
No 8
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=98.52 E-value=5.9e-07 Score=69.48 Aligned_cols=75 Identities=17% Similarity=0.220 Sum_probs=54.2
Q ss_pred ccCCeEecCCeeeeeecCC-CcEEEEcCcCcccccCCCCccccCCCCcEEecCCCcceeEEcCCCCCCCCCCEEEEEecC
Q 043413 44 ATSQKFLVGDNLIFQYPSS-HDVTEVSKPDYDSCQTSNKIKSYTDGNTVIPLSSPGKRYFICGAPGHCTVGMKVGIDTLA 122 (185)
Q Consensus 44 as~~~f~vGDtLvF~y~~~-H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~~~v~L~~~G~~YFiC~~~~HC~~GmKl~I~V~~ 122 (185)
....++++||+|+|.+.+. |||..+.....+. .+....-.+....++++++|.|-|+|.. |=..||+..|+|..
T Consensus 14 P~~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g---~~~~~s~~g~~~~~tF~~~G~Y~Y~C~p--H~~~GM~G~V~Vg~ 88 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDKGHNVETIKGMIPEG---AEAFKSKINEEYTVTVTEEGVYGVKCTP--HYGMGMVALIQVGD 88 (116)
T ss_pred CCEEEECCCCEEEEEECCCCeeEEEccCCCcCC---cccccCCCCCEEEEEeCCCEEEEEEcCC--CccCCCEEEEEECC
Confidence 3678999999999999877 9998753211111 1111111133348899999999999996 98999999999987
Q ss_pred C
Q 043413 123 S 123 (185)
Q Consensus 123 ~ 123 (185)
.
T Consensus 89 ~ 89 (116)
T TIGR02375 89 P 89 (116)
T ss_pred C
Confidence 4
No 9
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=98.29 E-value=4.1e-06 Score=60.28 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=49.6
Q ss_pred cCCeEecCCeeeeeecCC--CcEEEEcCcCcccccCCCCccccCCCC-cEEecCCCcceeEEcCCCCCCCCCCEEEEEec
Q 043413 45 TSQKFLVGDNLIFQYPSS--HDVTEVSKPDYDSCQTSNKIKSYTDGN-TVIPLSSPGKRYFICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 45 s~~~f~vGDtLvF~y~~~--H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~-~~v~L~~~G~~YFiC~~~~HC~~GmKl~I~V~ 121 (185)
...++.+||+|.|++++. |||...+..+. .=+.... ....|. ..++++++|.|-|.|.. | .+||..|.|.
T Consensus 11 ~~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~~-~~~~~~~--~~~~g~~~~~tf~~~G~y~y~C~~--H--p~M~G~v~V~ 83 (83)
T TIGR02657 11 PELHVKVGDTVTWINREAMPHNVHFVAGVLG-EAALKGP--MMKKEQAYSLTFTEAGTYDYHCTP--H--PFMRGKVVVE 83 (83)
T ss_pred CEEEECCCCEEEEEECCCCCccEEecCCCCc-ccccccc--ccCCCCEEEEECCCCEEEEEEcCC--C--CCCeEEEEEC
Confidence 557899999999999866 99986543211 1011111 123344 48899999999999999 7 5799999884
No 10
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.61 E-value=0.00023 Score=57.01 Aligned_cols=72 Identities=21% Similarity=0.337 Sum_probs=48.7
Q ss_pred CeEecCCeeeeeecCC-----CcEEEEcC-cCcc------------cccCCCCccccCCC-----CcEEecCCCcceeEE
Q 043413 47 QKFLVGDNLIFQYPSS-----HDVTEVSK-PDYD------------SCQTSNKIKSYTDG-----NTVIPLSSPGKRYFI 103 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~-----H~Vv~Vs~-~~Yd------------~C~~s~~~~~~s~G-----~~~v~L~~~G~~YFi 103 (185)
.+++.||+|+|...+. |+....+. ..+. .|....+ ..+| +.+++++++|+|||+
T Consensus 54 I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~---~~~g~~~~~~~tf~f~~aGtywyh 130 (148)
T TIGR03095 54 IVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPP---PKSGKFGYTDFTYHFSTAGTYWYL 130 (148)
T ss_pred EEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCC---CCCCccceeEEEEECCCCeEEEEE
Confidence 4578999999987432 77766532 1110 1211111 1123 347788899999999
Q ss_pred cCCCCCCCCCCEEEEEec
Q 043413 104 CGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 104 C~~~~HC~~GmKl~I~V~ 121 (185)
|.+++|=+.||...|.|.
T Consensus 131 C~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 131 CTYPGHAENGMYGKIVVK 148 (148)
T ss_pred cCChhHHHCCCEEEEEEC
Confidence 999999999999999873
No 11
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=97.23 E-value=0.00024 Score=52.69 Aligned_cols=63 Identities=22% Similarity=0.313 Sum_probs=31.7
Q ss_pred cCCeEecCC--eeeeeecCC--CcEEEEcCcCcccccCCCCccccCCCCc-EEec--CCCcceeEEcCCCCCCCCCCEEE
Q 043413 45 TSQKFLVGD--NLIFQYPSS--HDVTEVSKPDYDSCQTSNKIKSYTDGNT-VIPL--SSPGKRYFICGAPGHCTVGMKVG 117 (185)
Q Consensus 45 s~~~f~vGD--tLvF~y~~~--H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~~-~v~L--~~~G~~YFiC~~~~HC~~GmKl~ 117 (185)
+..+++.|+ +|+|++.+. |+++.-+ .+.......|.+ ++++ .++|.|=|+|++.. . ||..
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~---------~~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~--~--m~G~ 101 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPD---------LGISKVLPPGETATVTFTPLKPGEYEFYCTMHP--N--MKGT 101 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGG---------GTEEEEE-TT-EEEEEEEE-S-EEEEEB-SSS---T--TB--
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECC---------CceEEEECCCCEEEEEEcCCCCEEEEEEcCCCC--c--ceec
Confidence 568999999 666666654 7774422 111122334443 4555 89999999999844 2 7777
Q ss_pred EEe
Q 043413 118 IDT 120 (185)
Q Consensus 118 I~V 120 (185)
|+|
T Consensus 102 liV 104 (104)
T PF13473_consen 102 LIV 104 (104)
T ss_dssp ---
T ss_pred ccC
Confidence 765
No 12
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.05 E-value=0.0031 Score=53.05 Aligned_cols=77 Identities=22% Similarity=0.391 Sum_probs=49.5
Q ss_pred EecCCeeeeeecCC----CcEEEE-cCcCcccccC---CCCcc--------cc-----CCCCc---EEecCCCcceeEEc
Q 043413 49 FLVGDNLIFQYPSS----HDVTEV-SKPDYDSCQT---SNKIK--------SY-----TDGNT---VIPLSSPGKRYFIC 104 (185)
Q Consensus 49 f~vGDtLvF~y~~~----H~Vv~V-s~~~Yd~C~~---s~~~~--------~~-----s~G~~---~v~L~~~G~~YFiC 104 (185)
+-.|-++.|+|.+. |+++.| +...+..+-. .+.+. .+ ..|.+ .+.--.+|.||++|
T Consensus 90 VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~YwlvC 169 (196)
T PF06525_consen 90 VPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLVC 169 (196)
T ss_pred EcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEEc
Confidence 55788888888543 999888 3333333321 11111 01 12332 22122589999999
Q ss_pred CCCCCCCCCCEEEEEecCCCC
Q 043413 105 GAPGHCTVGMKVGIDTLASTS 125 (185)
Q Consensus 105 ~~~~HC~~GmKl~I~V~~~~~ 125 (185)
++.||-+.||-..+.|.....
T Consensus 170 ~ipGHA~sGMw~~LiVs~~vt 190 (196)
T PF06525_consen 170 GIPGHAESGMWGVLIVSSNVT 190 (196)
T ss_pred cCCChhhcCCEEEEEEecCcc
Confidence 999999999999999987655
No 13
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=96.99 E-value=0.0019 Score=51.45 Aligned_cols=64 Identities=13% Similarity=0.104 Sum_probs=41.9
Q ss_pred CCccccccCCeEecCCeeeeeecCC----CcEEEEcCcCcccccCCCCccccCCCCc---EEecCCCcceeEEcCCCCCC
Q 043413 38 TDLRTWATSQKFLVGDNLIFQYPSS----HDVTEVSKPDYDSCQTSNKIKSYTDGNT---VIPLSSPGKRYFICGAPGHC 110 (185)
Q Consensus 38 ~~Y~~Was~~~f~vGDtLvF~y~~~----H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~~---~v~L~~~G~~YFiC~~~~HC 110 (185)
.||.-=.+..+++.||.+.+.+.+. |++..- +|+ .. .....|.+ .|+.+++|.|.|+|+. ||
T Consensus 54 ~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~---~~g---is---~~I~pGet~TitF~adKpG~Y~y~C~~--HP 122 (135)
T TIGR03096 54 FNVLNEPEALVVKKGTPVKVTVENKSPISEGFSID---AYG---IS---EVIKAGETKTISFKADKAGAFTIWCQL--HP 122 (135)
T ss_pred eeeEEcCCEEEECCCCEEEEEEEeCCCCccceEEC---CCC---cc---eEECCCCeEEEEEECCCCEEEEEeCCC--CC
Confidence 3454446778899999998866432 776542 232 22 12233443 5777999999999999 87
Q ss_pred CC
Q 043413 111 TV 112 (185)
Q Consensus 111 ~~ 112 (185)
..
T Consensus 123 ~~ 124 (135)
T TIGR03096 123 KN 124 (135)
T ss_pred hh
Confidence 43
No 14
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=96.46 E-value=0.036 Score=45.22 Aligned_cols=79 Identities=22% Similarity=0.362 Sum_probs=51.1
Q ss_pred ccCCeEecCCeeeeeecCC----CcEEEEcC----cCccccc------CCCC-ccccC---CCCcEEecCCCcceeEEcC
Q 043413 44 ATSQKFLVGDNLIFQYPSS----HDVTEVSK----PDYDSCQ------TSNK-IKSYT---DGNTVIPLSSPGKRYFICG 105 (185)
Q Consensus 44 as~~~f~vGDtLvF~y~~~----H~Vv~Vs~----~~Yd~C~------~s~~-~~~~s---~G~~~v~L~~~G~~YFiC~ 105 (185)
.+...++.|.+++|.-++. |..+.-.+ .-+..=. ...+ ..... +|..++.++.+|.|=|+|.
T Consensus 62 p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye~~C~ 141 (158)
T COG4454 62 PSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYEFACN 141 (158)
T ss_pred CCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCccccCCcceeEeCCCCcEEEEEEecCCccEEEEec
Confidence 4567899999999976544 66544310 1011000 0000 01122 3344788999999999999
Q ss_pred CCCCCCCCCEEEEEecC
Q 043413 106 APGHCTVGMKVGIDTLA 122 (185)
Q Consensus 106 ~~~HC~~GmKl~I~V~~ 122 (185)
+++|-+.||...|+|..
T Consensus 142 iPGHy~AGM~g~itV~p 158 (158)
T COG4454 142 IPGHYEAGMVGEITVSP 158 (158)
T ss_pred CCCcccCCcEEEEEeCC
Confidence 99999999999999963
No 15
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=96.21 E-value=0.027 Score=47.21 Aligned_cols=34 Identities=26% Similarity=0.479 Sum_probs=28.8
Q ss_pred EecCCCcceeEEcCCCCCCCCCCEEEEEecCCCC
Q 043413 92 IPLSSPGKRYFICGAPGHCTVGMKVGIDTLASTS 125 (185)
Q Consensus 92 v~L~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~~ 125 (185)
++-.++|.||++|++.||-+.||=..+.|.....
T Consensus 156 ~~~~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 156 WNDTSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred eccCCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 3334799999999999999999999999877654
No 16
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=95.92 E-value=0.048 Score=42.97 Aligned_cols=87 Identities=22% Similarity=0.334 Sum_probs=50.0
Q ss_pred EEEcCCCCCCCCCCCccccccCCeEecC-C--eeeeeecC-----C--CcEEEEcCcCcccc----------------cC
Q 043413 25 YTVGGPNGGWDTATDLRTWATSQKFLVG-D--NLIFQYPS-----S--HDVTEVSKPDYDSC----------------QT 78 (185)
Q Consensus 25 ~~VGg~~~GW~~~~~Y~~Was~~~f~vG-D--tLvF~y~~-----~--H~Vv~Vs~~~Yd~C----------------~~ 78 (185)
..|-+ ++.+.|+. +.+++..| . +|+|+... . ||++.+...+.+.- +-
T Consensus 3 v~i~~-~d~M~Fd~------~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d 75 (125)
T TIGR02695 3 VTIEG-NDSMQFNT------KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGD 75 (125)
T ss_pred EEEec-CCcccccc------cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCC
Confidence 34445 56777754 33344444 2 46777763 2 99988755554421 11
Q ss_pred CCCc---cccCCCC-cEEecC----CCcc-eeEEcCCCCCCCCCCEEEEE
Q 043413 79 SNKI---KSYTDGN-TVIPLS----SPGK-RYFICGAPGHCTVGMKVGID 119 (185)
Q Consensus 79 s~~~---~~~s~G~-~~v~L~----~~G~-~YFiC~~~~HC~~GmKl~I~ 119 (185)
...+ .....|. ++|+++ ++|. |-|+|+++||=. .||..++
T Consensus 76 ~~ViAhTkliggGes~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 76 ARVIAHTKVIGGGEKTSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred cceEEEccccCCCceEEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 1111 1122444 355554 4675 999999999975 6998765
No 17
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=94.97 E-value=0.15 Score=44.10 Aligned_cols=77 Identities=27% Similarity=0.412 Sum_probs=45.4
Q ss_pred eEecCCeeeee---ecCC------C-cEEEEcCcCcccccC-CCCccc------------------cCCCCcEEecCCCc
Q 043413 48 KFLVGDNLIFQ---YPSS------H-DVTEVSKPDYDSCQT-SNKIKS------------------YTDGNTVIPLSSPG 98 (185)
Q Consensus 48 ~f~vGDtLvF~---y~~~------H-~Vv~Vs~~~Yd~C~~-s~~~~~------------------~s~G~~~v~L~~~G 98 (185)
-+++||.|-+- |+.+ + -|+.|++++|+.|+. +.+... |+.-..-+.+ ++|
T Consensus 46 ~v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF-~pG 124 (233)
T KOG3858|consen 46 YVQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCELRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEF-QPG 124 (233)
T ss_pred EeccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhccCCCcEEEEecCCCcchhhhhhheecCCCCCCccc-cCC
Confidence 46678888874 3332 2 357889999999996 322211 1111112333 356
Q ss_pred -ceeEEcCC-----------CCCCCC-CCEEEEEecCCCC
Q 043413 99 -KRYFICGA-----------PGHCTV-GMKVGIDTLASTS 125 (185)
Q Consensus 99 -~~YFiC~~-----------~~HC~~-GmKl~I~V~~~~~ 125 (185)
.||||++- ++-|.. .||+.+.|.....
T Consensus 125 ~~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~~~ 164 (233)
T KOG3858|consen 125 HTYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQSPR 164 (233)
T ss_pred CeEEEEeCCCccccccchhhCCEeccCCceEEEEecccCC
Confidence 58888863 234433 4999998876544
No 18
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=94.71 E-value=0.058 Score=41.57 Aligned_cols=66 Identities=18% Similarity=0.272 Sum_probs=44.3
Q ss_pred cCCeEecCCeeeeeecCC---CcEEEEcCcCcccccCCCCccccCCCC---cEEecCCCcceeEEcCCCCCCCCC---CE
Q 043413 45 TSQKFLVGDNLIFQYPSS---HDVTEVSKPDYDSCQTSNKIKSYTDGN---TVIPLSSPGKRYFICGAPGHCTVG---MK 115 (185)
Q Consensus 45 s~~~f~vGDtLvF~y~~~---H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~---~~v~L~~~G~~YFiC~~~~HC~~G---mK 115 (185)
....+..|+.+.|+.++. |+...- ++. .....-.|. ..++.+++|.|++.|+. .|..| |+
T Consensus 46 ~~l~lp~g~~v~~~ltS~DViHsf~ip---~~~------~k~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~gH~~M~ 114 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSEDVIHSFWIP---ELG------IKMDAIPGRTNSVTFTPDKPGTYYGQCAE--YCGAGHSFMP 114 (120)
T ss_dssp SEEEEETTSEEEEEEEESSS-EEEEET---TCT------EEEEEBTTCEEEEEEEESSSEEEEEEE-S--SSSTTGGG-E
T ss_pred ceecccccceEeEEEEcCCcccccccc---ccC------cccccccccceeeeeeeccCCcEEEcCcc--ccCcCcCCCe
Confidence 345688999999998765 776541 111 011112444 36788999999999998 89888 99
Q ss_pred EEEEec
Q 043413 116 VGIDTL 121 (185)
Q Consensus 116 l~I~V~ 121 (185)
+.|.|.
T Consensus 115 ~~v~VV 120 (120)
T PF00116_consen 115 GKVIVV 120 (120)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 998873
No 19
>PRK02888 nitrous-oxide reductase; Validated
Probab=94.59 E-value=0.11 Score=50.58 Aligned_cols=67 Identities=16% Similarity=0.276 Sum_probs=45.6
Q ss_pred cCCeEecCCeeeeeecCC-------CcEEEEcCcCcccccCCCCccccCCCCc---EEecCCCcceeEEcCCCCCCCC--
Q 043413 45 TSQKFLVGDNLIFQYPSS-------HDVTEVSKPDYDSCQTSNKIKSYTDGNT---VIPLSSPGKRYFICGAPGHCTV-- 112 (185)
Q Consensus 45 s~~~f~vGDtLvF~y~~~-------H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~~---~v~L~~~G~~YFiC~~~~HC~~-- 112 (185)
...+++.||.+.|..++- |.... ..|+ .......|.+ +|+.+++|.|||+|+. .|..
T Consensus 555 ~~i~Vk~GDeVt~~lTN~d~~~DViHGF~I---p~~n------I~~dv~PG~t~svtF~adkPGvy~~~Cte--fCGa~H 623 (635)
T PRK02888 555 REFTVKQGDEVTVIVTNLDKVEDLTHGFAI---PNYG------VNMEVAPQATASVTFTADKPGVYWYYCTW--FCHALH 623 (635)
T ss_pred ceEEecCCCEEEEEEEeCCcccccccceee---cccC------ccEEEcCCceEEEEEEcCCCEEEEEECCc--ccccCc
Confidence 347899999999999762 44433 1221 1112224443 6788999999999998 5655
Q ss_pred -CCEEEEEecC
Q 043413 113 -GMKVGIDTLA 122 (185)
Q Consensus 113 -GmKl~I~V~~ 122 (185)
+|+..|.|.+
T Consensus 624 ~~M~G~~iVep 634 (635)
T PRK02888 624 MEMRGRMLVEP 634 (635)
T ss_pred ccceEEEEEEe
Confidence 5999999864
No 20
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=94.21 E-value=0.089 Score=43.70 Aligned_cols=67 Identities=18% Similarity=0.203 Sum_probs=45.3
Q ss_pred CCeEecCCeeeeeecCC---CcEEEEcCcCcccccCCCCccccCCCC---cEEecCCCcceeEEcCCCCCCCCC---CEE
Q 043413 46 SQKFLVGDNLIFQYPSS---HDVTEVSKPDYDSCQTSNKIKSYTDGN---TVIPLSSPGKRYFICGAPGHCTVG---MKV 116 (185)
Q Consensus 46 ~~~f~vGDtLvF~y~~~---H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~---~~v~L~~~G~~YFiC~~~~HC~~G---mKl 116 (185)
...+.+|+.++|+-++. |+...-+... ....-.|. ..++.+++|.|++.|+. .|..| |++
T Consensus 118 ~l~vp~g~~v~~~~ts~DV~Hsf~ip~~~~---------k~da~PG~~~~~~~~~~~~G~y~~~c~e--~cG~~h~~M~~ 186 (201)
T TIGR02866 118 ELVVPAGTPVRLQVTSKDVIHSFWVPELGG---------KIDAIPGQYNALWFNADEPGVYYGYCAE--LCGAGHSLMLF 186 (201)
T ss_pred EEEEEcCCEEEEEEEeCchhhcccccccCc---------eEEecCCcEEEEEEEeCCCEEEEEEehh--hCCcCccCCeE
Confidence 34688999999998765 6653321110 01111343 25788999999999998 66665 999
Q ss_pred EEEecCC
Q 043413 117 GIDTLAS 123 (185)
Q Consensus 117 ~I~V~~~ 123 (185)
.|.|.+.
T Consensus 187 ~v~v~~~ 193 (201)
T TIGR02866 187 KVVVVER 193 (201)
T ss_pred EEEEECH
Confidence 9998764
No 21
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=93.60 E-value=0.094 Score=42.16 Aligned_cols=75 Identities=25% Similarity=0.431 Sum_probs=43.7
Q ss_pred CeEecCCeeeeeecCC------------CcEEEEcCcCcccccCCC-Ccccc-------CCCCcEEec------------
Q 043413 47 QKFLVGDNLIFQYPSS------------HDVTEVSKPDYDSCQTSN-KIKSY-------TDGNTVIPL------------ 94 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~------------H~Vv~Vs~~~Yd~C~~s~-~~~~~-------s~G~~~v~L------------ 94 (185)
..+++||.|-|--... ..+++|++++|+.|+... ....+ ..|...|++
T Consensus 24 i~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G~ 103 (145)
T PF00812_consen 24 IEVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLGL 103 (145)
T ss_dssp EEE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTSS
T ss_pred EEecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCCe
Confidence 4688999999854321 357889999999999642 22211 123333321
Q ss_pred C-CCc-ceeEEcCCC-----------CCCCC-CCEEEEEec
Q 043413 95 S-SPG-KRYFICGAP-----------GHCTV-GMKVGIDTL 121 (185)
Q Consensus 95 ~-~~G-~~YFiC~~~-----------~HC~~-GmKl~I~V~ 121 (185)
. ++| .||||++-. |-|.. .|||.|.|.
T Consensus 104 EF~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~ 144 (145)
T PF00812_consen 104 EFQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG 144 (145)
T ss_dssp S--TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred eecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence 1 356 589998532 22643 589998874
No 22
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=92.12 E-value=0.38 Score=41.81 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=47.4
Q ss_pred CeEecCCeeeeeecCC---CcEEEEcCcCcccccCCCCccccCCCCcEEecCCCcceeEEcCCCCCCCCC---CEEEEEe
Q 043413 47 QKFLVGDNLIFQYPSS---HDVTEVSKPDYDSCQTSNKIKSYTDGNTVIPLSSPGKRYFICGAPGHCTVG---MKVGIDT 120 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~---H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~~~v~L~~~G~~YFiC~~~~HC~~G---mKl~I~V 120 (185)
..+.+|..++|+-++. |+...-.... +.=...+ ..-...++.+++|.|+.+|+. .|..| |++.|.|
T Consensus 139 l~lPv~~~V~f~ltS~DViHsF~IP~l~~-k~d~iPG-----~~~~~~~~~~~~G~Y~g~Cae--~CG~gH~~M~~~v~v 210 (247)
T COG1622 139 LVLPVGRPVRFKLTSADVIHSFWIPQLGG-KIDAIPG-----MTTELWLTANKPGTYRGICAE--YCGPGHSFMRFKVIV 210 (247)
T ss_pred EEEeCCCeEEEEEEechhceeEEecCCCc-eeeecCC-----ceEEEEEecCCCeEEEEEcHh--hcCCCcccceEEEEE
Confidence 5788899999998876 6654422110 0000000 111236789999999999998 78776 9999999
Q ss_pred cCCCC
Q 043413 121 LASTS 125 (185)
Q Consensus 121 ~~~~~ 125 (185)
.....
T Consensus 211 vs~~~ 215 (247)
T COG1622 211 VSQED 215 (247)
T ss_pred EcHHH
Confidence 88754
No 23
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=91.88 E-value=1.7 Score=40.05 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=21.8
Q ss_pred EEecCCCcceeEEcCCCCCCCCCCEEEEEecCCC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVGMKVGIDTLAST 124 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~ 124 (185)
+++| ++|+|.|+|+. | .+|+..|+|....
T Consensus 91 ~~~L-~pGtY~~~C~~--~--~~~~g~l~Vtg~~ 119 (375)
T PRK10378 91 TANL-QPGEYDMTCGL--L--TNPKGKLIVKGEA 119 (375)
T ss_pred EEec-CCceEEeecCc--C--CCCCceEEEeCCC
Confidence 5566 69999999977 6 4468888887543
No 24
>PLN02354 copper ion binding / oxidoreductase
Probab=91.76 E-value=1.3 Score=42.41 Aligned_cols=71 Identities=11% Similarity=0.161 Sum_probs=47.8
Q ss_pred CeEecCCeeeeeecCC---------CcEEEEcCcCcc-----cccCCCCccccCCCCc---EEec-CCCcceeEEcCCCC
Q 043413 47 QKFLVGDNLIFQYPSS---------HDVTEVSKPDYD-----SCQTSNKIKSYTDGNT---VIPL-SSPGKRYFICGAPG 108 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~---------H~Vv~Vs~~~Yd-----~C~~s~~~~~~s~G~~---~v~L-~~~G~~YFiC~~~~ 108 (185)
+.+..||+|+.+..+. |-+.|-.....| .|-+. .|.+ .|++ +..|+|||-+-...
T Consensus 60 I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQcpI~-------PG~sf~Y~F~~~~q~GT~WYHsH~~~ 132 (552)
T PLN02354 60 INSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNCPIP-------PGTNFTYHFQPKDQIGSYFYYPSTGM 132 (552)
T ss_pred EEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcCCCC-------CCCcEEEEEEeCCCCcceEEecCccc
Confidence 5789999998876543 555443221122 23222 3433 5666 47899999998888
Q ss_pred CCCCCCEEEEEecCCC
Q 043413 109 HCTVGMKVGIDTLAST 124 (185)
Q Consensus 109 HC~~GmKl~I~V~~~~ 124 (185)
+-..||...|.|....
T Consensus 133 Q~~~Gl~G~lII~~~~ 148 (552)
T PLN02354 133 HRAAGGFGGLRVNSRL 148 (552)
T ss_pred eecCCccceEEEcCCc
Confidence 8888999999997654
No 25
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=91.51 E-value=0.6 Score=41.40 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=47.2
Q ss_pred CeEecCCeeeeeecC-----C-CcEEEEcCcCcccccCCCCccccCCCCc---EEecCCCcceeEEcCC----CCCCCCC
Q 043413 47 QKFLVGDNLIFQYPS-----S-HDVTEVSKPDYDSCQTSNKIKSYTDGNT---VIPLSSPGKRYFICGA----PGHCTVG 113 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~-----~-H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~~---~v~L~~~G~~YFiC~~----~~HC~~G 113 (185)
.+++.||+|++.+.+ . |++..=-....+ ..........|.+ .|+++.+|+|||-|.. ..|=..|
T Consensus 61 irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~d---g~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~G 137 (311)
T TIGR02376 61 IRVHEGDYVELTLINPPTNTMPHNVDFHAATGAL---GGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVSG 137 (311)
T ss_pred EEEECCCEEEEEEEeCCCCCCceeeeecCCCccC---CCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhcC
Confidence 678999999966543 2 666431100000 0011112334543 6788899999999995 3477789
Q ss_pred CEEEEEecCCC
Q 043413 114 MKVGIDTLAST 124 (185)
Q Consensus 114 mKl~I~V~~~~ 124 (185)
|...|.|....
T Consensus 138 l~G~liV~~~~ 148 (311)
T TIGR02376 138 MNGAIMVLPRE 148 (311)
T ss_pred cceEEEeeccC
Confidence 99999998653
No 26
>PLN02604 oxidoreductase
Probab=91.40 E-value=1.2 Score=42.67 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=48.6
Q ss_pred cCCeEecCCeeeeeecCC-----CcEE-----EEcCcCcccccCCC-CccccCCCCc---EEecCCCcceeEEcCCCCCC
Q 043413 45 TSQKFLVGDNLIFQYPSS-----HDVT-----EVSKPDYDSCQTSN-KIKSYTDGNT---VIPLSSPGKRYFICGAPGHC 110 (185)
Q Consensus 45 s~~~f~vGDtLvF~y~~~-----H~Vv-----~Vs~~~Yd~C~~s~-~~~~~s~G~~---~v~L~~~G~~YFiC~~~~HC 110 (185)
-...++.||+|+++..+. |++. +.....+|. ... .......|.+ .|+++.+|++||-|-...|-
T Consensus 55 P~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG--~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~ 132 (566)
T PLN02604 55 PTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDG--TEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQR 132 (566)
T ss_pred CcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccC--CCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHH
Confidence 346799999998877432 2322 110000111 000 0001224443 67788999999999999999
Q ss_pred CCCCEEEEEecCCC
Q 043413 111 TVGMKVGIDTLAST 124 (185)
Q Consensus 111 ~~GmKl~I~V~~~~ 124 (185)
..||...|.|....
T Consensus 133 ~~Gl~G~liV~~~~ 146 (566)
T PLN02604 133 EAGLYGSIRVSLPR 146 (566)
T ss_pred hCCCeEEEEEEecC
Confidence 99999999998654
No 27
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=89.91 E-value=1 Score=37.70 Aligned_cols=66 Identities=18% Similarity=0.204 Sum_probs=42.7
Q ss_pred eEecCCeeeeeecCC---CcEEEEcCcCcccccCCCCccccCCCCc---EEecCCCcceeEEcCCCCCCCCC---CEEEE
Q 043413 48 KFLVGDNLIFQYPSS---HDVTEVSKPDYDSCQTSNKIKSYTDGNT---VIPLSSPGKRYFICGAPGHCTVG---MKVGI 118 (185)
Q Consensus 48 ~f~vGDtLvF~y~~~---H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~~---~v~L~~~G~~YFiC~~~~HC~~G---mKl~I 118 (185)
.+.+|..+.|+-++. |+...-+.. .....-.|.. .++.+++|.|+..|+. .|..| |++.|
T Consensus 119 ~lp~g~~v~~~ltS~DViHsf~vp~l~---------~k~d~~PG~~~~~~~~~~~~G~y~g~C~e--~CG~~H~~M~~~v 187 (194)
T MTH00047 119 RLVYGVPYHLLVTSSDVIHSFSVPDLN---------LKMDAIPGRINHLFFCPDRHGVFVGYCSE--LCGVGHSYMPIVI 187 (194)
T ss_pred EEeCCCEEEeeeecCccccceeccccC---------ceeecCCCceEEEEEEcCCCEEEEEEeeh--hhCcCcccCcEEE
Confidence 455677777777665 555331110 0011113432 5678899999999998 78776 99999
Q ss_pred EecCCC
Q 043413 119 DTLAST 124 (185)
Q Consensus 119 ~V~~~~ 124 (185)
.|.+..
T Consensus 188 ~v~~~~ 193 (194)
T MTH00047 188 EVVDVD 193 (194)
T ss_pred EEEcCC
Confidence 998764
No 28
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=89.75 E-value=0.18 Score=38.55 Aligned_cols=77 Identities=9% Similarity=0.101 Sum_probs=47.2
Q ss_pred CCeEecCCeeeeeecCC----CcEEEEcCcCcccccCCC-----CccccCCCCc---EEecCC-CcceeEEcCCCCCCCC
Q 043413 46 SQKFLVGDNLIFQYPSS----HDVTEVSKPDYDSCQTSN-----KIKSYTDGNT---VIPLSS-PGKRYFICGAPGHCTV 112 (185)
Q Consensus 46 ~~~f~vGDtLvF~y~~~----H~Vv~Vs~~~Yd~C~~s~-----~~~~~s~G~~---~v~L~~-~G~~YFiC~~~~HC~~ 112 (185)
.+.++.||+|.+++.+. ++|..= .-.+..-...+ .......|.+ .|++.. +|+|||-|-..+|-..
T Consensus 27 tI~v~~Gd~v~i~~~N~l~~~~siH~H-G~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~ 105 (117)
T PF07732_consen 27 TIRVREGDTVRITVTNNLDEPTSIHWH-GLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVM 105 (117)
T ss_dssp EEEEETTEEEEEEEEEESSSGBSEEEE-TSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHT
T ss_pred EEEEEcCCeeEEEEEeccccccccccc-eeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCCchhcC
Confidence 36899999999988644 455331 00111100011 0111223433 677888 9999999999886558
Q ss_pred CCEEEEEecCC
Q 043413 113 GMKVGIDTLAS 123 (185)
Q Consensus 113 GmKl~I~V~~~ 123 (185)
||-..|.|...
T Consensus 106 GL~G~~iV~~~ 116 (117)
T PF07732_consen 106 GLYGAIIVEPP 116 (117)
T ss_dssp TEEEEEEEE-T
T ss_pred cCEEEEEEcCC
Confidence 99999998754
No 29
>PLN02191 L-ascorbate oxidase
Probab=84.38 E-value=4.4 Score=39.02 Aligned_cols=34 Identities=9% Similarity=0.149 Sum_probs=30.0
Q ss_pred EEecCCCcceeEEcCCCCCCCCCCEEEEEecCCC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVGMKVGIDTLAST 124 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~ 124 (185)
.|++++.|+|||-|-...+-..||...|.|....
T Consensus 112 ~f~~~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~ 145 (574)
T PLN02191 112 KFTVEKPGTHFYHGHYGMQRSAGLYGSLIVDVAK 145 (574)
T ss_pred EEECCCCeEEEEeeCcHHHHhCCCEEEEEEccCC
Confidence 6788999999999999888899999999997543
No 30
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=83.71 E-value=4.6 Score=34.45 Aligned_cols=67 Identities=16% Similarity=0.055 Sum_probs=43.7
Q ss_pred CCeEecCCeeeeeecCC---CcEEEEcCcCcccccCCCCccccCCCC---cEEecCCCcceeEEcCCCCCCCCC---CEE
Q 043413 46 SQKFLVGDNLIFQYPSS---HDVTEVSKPDYDSCQTSNKIKSYTDGN---TVIPLSSPGKRYFICGAPGHCTVG---MKV 116 (185)
Q Consensus 46 ~~~f~vGDtLvF~y~~~---H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~---~~v~L~~~G~~YFiC~~~~HC~~G---mKl 116 (185)
...+-+|-.++|+-++. |+...-... . ....-.|. ..++.+++|.|+-.|+. .|..| |.+
T Consensus 140 el~lP~g~pV~~~ltS~DViHSF~VP~l~--------~-K~DaiPG~~n~~~~~~~~~G~y~g~CaE--~CG~~Ha~M~~ 208 (226)
T TIGR01433 140 EIAFPVNTPINFKITSNSVMNSFFIPQLG--------S-QIYAMAGMQTKLHLIANEPGVYDGISAN--YSGPGFSGMKF 208 (226)
T ss_pred eEEEECCCEEEEEEEECchhhhhhhhhcC--------C-eeecCCCceEEEEEEeCCCEEEEEEchh--hcCcCccCCeE
Confidence 34677888888888765 655321111 0 00111333 25788999999999998 78776 999
Q ss_pred EEEecCC
Q 043413 117 GIDTLAS 123 (185)
Q Consensus 117 ~I~V~~~ 123 (185)
.|.|...
T Consensus 209 ~V~v~~~ 215 (226)
T TIGR01433 209 KAIATDR 215 (226)
T ss_pred EEEEECH
Confidence 9988653
No 31
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=80.86 E-value=10 Score=32.46 Aligned_cols=31 Identities=23% Similarity=0.429 Sum_probs=25.2
Q ss_pred EEecCCCcceeEEcCCCCCCCCC---CEEEEEecCC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVG---MKVGIDTLAS 123 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~G---mKl~I~V~~~ 123 (185)
.+..+++|.||..|+. -|..| |++.|.|...
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~H~~M~~~v~vv~~ 216 (230)
T MTH00129 183 AFIASRPGVFYGQCSE--ICGANHSFMPIVVEAVPL 216 (230)
T ss_pred EEEeCCceEEEEEChh--hccccccCCcEEEEEECH
Confidence 5678899999999998 67665 9999988653
No 32
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=79.01 E-value=1.3 Score=33.22 Aligned_cols=12 Identities=17% Similarity=-0.042 Sum_probs=6.9
Q ss_pred CchhHHHHHHHH
Q 043413 1 MAVLRTFICVAA 12 (185)
Q Consensus 1 Ma~~~~~~~l~~ 12 (185)
||++.+|||.++
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 897655544433
No 33
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=78.94 E-value=8.6 Score=37.31 Aligned_cols=83 Identities=16% Similarity=0.317 Sum_probs=52.3
Q ss_pred CCCCCCccccc--cCCeEecCCeeeeeecCC----CcEE------EEcC-cC-cccccCCCCccccCCCCc---EEecCC
Q 043413 34 WDTATDLRTWA--TSQKFLVGDNLIFQYPSS----HDVT------EVSK-PD-YDSCQTSNKIKSYTDGNT---VIPLSS 96 (185)
Q Consensus 34 W~~~~~Y~~Wa--s~~~f~vGDtLvF~y~~~----H~Vv------~Vs~-~~-Yd~C~~s~~~~~~s~G~~---~v~L~~ 96 (185)
|.++- ..|. ....++.||++++.+.+. |.+. +|.. .+ |. ...-+.....|.+ .|.++.
T Consensus 488 wtiNG--~~~~~~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~---~~~dTv~V~Pg~t~~~~f~ad~ 562 (587)
T TIGR01480 488 WSFDG--EAFGLKTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQ---VRKHTVDVPPGGKRSFRVTADA 562 (587)
T ss_pred EEECC--ccCCCCCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCccc---ccCCceeeCCCCEEEEEEECCC
Confidence 77543 2243 357899999999998654 5442 3311 11 11 0001112223433 577889
Q ss_pred CcceeEEcCCCCCCCCCCEEEEEec
Q 043413 97 PGKRYFICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 97 ~G~~YFiC~~~~HC~~GmKl~I~V~ 121 (185)
+|.++|-|-+..|=+.||--.|.|.
T Consensus 563 pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 563 LGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred CeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 9999999999999999999888773
No 34
>PLN02835 oxidoreductase
Probab=78.82 E-value=14 Score=35.42 Aligned_cols=74 Identities=14% Similarity=0.119 Sum_probs=46.9
Q ss_pred CeEecCCeeeeeecCC---------CcEEEEcCcCccc-ccCCCCccccCCCCc---EEec-CCCcceeEEcCCCCCCCC
Q 043413 47 QKFLVGDNLIFQYPSS---------HDVTEVSKPDYDS-CQTSNKIKSYTDGNT---VIPL-SSPGKRYFICGAPGHCTV 112 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~---------H~Vv~Vs~~~Yd~-C~~s~~~~~~s~G~~---~v~L-~~~G~~YFiC~~~~HC~~ 112 (185)
+.++.||+|+.+..+. |-+.+......|. ....-++ ..|.+ .|++ +..|+|||=|-...+-..
T Consensus 62 I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI---~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~ 138 (539)
T PLN02835 62 LDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPI---PPNSNYTYKFQTKDQIGTFTYFPSTLFHKAA 138 (539)
T ss_pred EEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCC---CCCCcEEEEEEECCCCEeEEEEeCccchhcC
Confidence 5799999999887543 4444432211222 0001112 23433 5665 579999999988888888
Q ss_pred CCEEEEEecCC
Q 043413 113 GMKVGIDTLAS 123 (185)
Q Consensus 113 GmKl~I~V~~~ 123 (185)
|+...|.|...
T Consensus 139 Gl~G~lIV~~~ 149 (539)
T PLN02835 139 GGFGAINVYER 149 (539)
T ss_pred cccceeEEeCC
Confidence 99999999653
No 35
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=78.17 E-value=7.5 Score=33.01 Aligned_cols=31 Identities=19% Similarity=0.405 Sum_probs=26.3
Q ss_pred EEecCCCcceeEEcCCCCCCCCC---CEEEEEecCC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVG---MKVGIDTLAS 123 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~G---mKl~I~V~~~ 123 (185)
.++.+++|.||..|+. -|..| |++.|.|...
T Consensus 183 ~~~~~~~g~y~~~C~e--~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 183 SFEPKRPGVFYGQCSE--ICGANHSFMPIVVEAVPL 216 (228)
T ss_pred EEEeCCCEEEEEECcc--ccCcCcCCCeEEEEEECH
Confidence 5678899999999998 78777 9999988753
No 36
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=77.62 E-value=15 Score=31.36 Aligned_cols=30 Identities=20% Similarity=0.469 Sum_probs=25.6
Q ss_pred EEecCCCcceeEEcCCCCCCCCC---CEEEEEecC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVG---MKVGIDTLA 122 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~G---mKl~I~V~~ 122 (185)
.++.+++|.||..|+. -|..| |++.|.|..
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~ 215 (227)
T MTH00154 183 NFLINRPGLFFGQCSE--ICGANHSFMPIVIESVS 215 (227)
T ss_pred EEEEcCceEEEEEeec--hhCcCccCCeEEEEEeC
Confidence 5778899999999998 77776 999998865
No 37
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=77.22 E-value=4.4 Score=38.55 Aligned_cols=34 Identities=9% Similarity=0.094 Sum_probs=30.5
Q ss_pred EEecCCCcceeEEcCCCCCCCCCCEEEEEecCCC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVGMKVGIDTLAST 124 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~ 124 (185)
.|+++.+|+|||-|-...|-..||...|.|....
T Consensus 90 ~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~ 123 (541)
T TIGR03388 90 NFVVDRPGTYFYHGHYGMQRSAGLYGSLIVDVPD 123 (541)
T ss_pred EEEcCCCEEEEEEecchHHhhccceEEEEEecCC
Confidence 6788999999999999989999999999998654
No 38
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=76.49 E-value=9.4 Score=31.39 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=24.8
Q ss_pred EEecCCCcceeEEcCCCCCCCCC---CEEEEEecC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVG---MKVGIDTLA 122 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~G---mKl~I~V~~ 122 (185)
.+..+++|.||..|+. -|..| |.+.|.|..
T Consensus 116 ~~~~~~~G~y~gqCsE--lCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 116 NTFILREGVFYGQCSE--MCGTLHGFMPIVVEAVS 148 (162)
T ss_pred EEecCCCeEEEEEcch--hcCcCccCceEEEEEeC
Confidence 4567899999999998 77765 999988765
No 39
>PLN02991 oxidoreductase
Probab=76.16 E-value=17 Score=35.05 Aligned_cols=75 Identities=17% Similarity=0.160 Sum_probs=46.8
Q ss_pred CeEecCCeeeeeecCC---------CcEEEEcCcCccccc-CCCCccccCCCCc---EEec-CCCcceeEEcCCCCCCCC
Q 043413 47 QKFLVGDNLIFQYPSS---------HDVTEVSKPDYDSCQ-TSNKIKSYTDGNT---VIPL-SSPGKRYFICGAPGHCTV 112 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~---------H~Vv~Vs~~~Yd~C~-~s~~~~~~s~G~~---~v~L-~~~G~~YFiC~~~~HC~~ 112 (185)
+.+..||+|+.+..+. |-+.+......|.=- ..-+| ..|.+ .|++ ++.|+|||=+-...+-..
T Consensus 61 I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI---~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~ 137 (543)
T PLN02991 61 IISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPI---PPGKNYTYALQVKDQIGSFYYFPSLGFHKAA 137 (543)
T ss_pred EEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCcc---CCCCcEEEEEEeCCCCcceEEecCcchhhhC
Confidence 5789999999887654 445443111122200 00111 13332 6777 479999999988777677
Q ss_pred CCEEEEEecCCC
Q 043413 113 GMKVGIDTLAST 124 (185)
Q Consensus 113 GmKl~I~V~~~~ 124 (185)
|+...|.|....
T Consensus 138 Gl~G~lIV~~~~ 149 (543)
T PLN02991 138 GGFGAIRISSRP 149 (543)
T ss_pred CCeeeEEEeCCc
Confidence 999999997654
No 40
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=75.71 E-value=17 Score=30.92 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=26.1
Q ss_pred EEecCCCcceeEEcCCCCCCCCC---CEEEEEecCC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVG---MKVGIDTLAS 123 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~G---mKl~I~V~~~ 123 (185)
.++.+++|.||..|+. -|..| |.+.|.|...
T Consensus 183 ~~~~~~~G~~~g~CsE--~CG~~Hs~M~~~v~vv~~ 216 (225)
T MTH00168 183 AFLSSRPGSFYGQCSE--ICGANHSFMPIVVEFVPW 216 (225)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeCH
Confidence 5678899999999998 78777 9999988753
No 41
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=75.05 E-value=17 Score=30.74 Aligned_cols=31 Identities=19% Similarity=0.455 Sum_probs=26.1
Q ss_pred EEecCCCcceeEEcCCCCCCCCC---CEEEEEecCC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVG---MKVGIDTLAS 123 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~G---mKl~I~V~~~ 123 (185)
.++.+++|.||..|+. -|..| |.+.|.|...
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~~ 216 (226)
T MTH00139 183 GFFINRPGVFYGQCSE--ICGANHSFMPIVVEAISP 216 (226)
T ss_pred EEEcCCCEEEEEEChh--hcCcCcCCCeEEEEEeCH
Confidence 5678899999999998 78776 9999988653
No 42
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=74.41 E-value=16 Score=30.78 Aligned_cols=66 Identities=9% Similarity=0.039 Sum_probs=42.8
Q ss_pred CeEecCCeeeeeecCC---CcEEEEcCcCcccccCCCCccccCCCC---cEEecCCCcceeEEcCCCCCCCCC---CEEE
Q 043413 47 QKFLVGDNLIFQYPSS---HDVTEVSKPDYDSCQTSNKIKSYTDGN---TVIPLSSPGKRYFICGAPGHCTVG---MKVG 117 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~---H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~---~~v~L~~~G~~YFiC~~~~HC~~G---mKl~ 117 (185)
..+-+|-.|.|+-++. |+...=. +... ...-.|. ..++.+++|.||-.|+. -|..| |++.
T Consensus 132 l~iP~g~~v~~~ltS~DViHsf~vP~--------l~~k-~daiPG~~~~~~~~~~~~G~y~g~Cae--~CG~~Hs~M~~~ 200 (217)
T TIGR01432 132 LNIPKDRPVLFKLQSADTMTSFWIPQ--------LGGQ-KYAMTGMTMNWYLQADQVGTYRGRNAN--FNGEGFADQTFD 200 (217)
T ss_pred EEEECCCEEEEEEECCchhhhhhchh--------hCce-eecCCCceEEEEEEeCCCEEEEEEehh--hcCccccCCeEE
Confidence 4566777888887765 5543211 1100 0111343 26788999999999998 78776 9999
Q ss_pred EEecCC
Q 043413 118 IDTLAS 123 (185)
Q Consensus 118 I~V~~~ 123 (185)
|.|...
T Consensus 201 v~v~~~ 206 (217)
T TIGR01432 201 VNAVSE 206 (217)
T ss_pred EEEeCH
Confidence 998753
No 43
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=74.13 E-value=9.6 Score=37.12 Aligned_cols=72 Identities=14% Similarity=0.160 Sum_probs=48.8
Q ss_pred CeEecCCeeeeeecCC---------CcEEEEcCc-----CcccccCCCCccccCCCCc---EEec-CCCcceeEEcCCCC
Q 043413 47 QKFLVGDNLIFQYPSS---------HDVTEVSKP-----DYDSCQTSNKIKSYTDGNT---VIPL-SSPGKRYFICGAPG 108 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~---------H~Vv~Vs~~-----~Yd~C~~s~~~~~~s~G~~---~v~L-~~~G~~YFiC~~~~ 108 (185)
+.++.||+|+.+..+. |-+.|-... .+..|-+. .|.+ .|++ ++.|+|||-+-...
T Consensus 62 I~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQcPI~-------PG~sftY~F~~~dq~GT~WYHsH~~~ 134 (596)
T PLN00044 62 LNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNCAIP-------AGWNWTYQFQVKDQVGSFFYAPSTAL 134 (596)
T ss_pred EEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcCCcC-------CCCcEEEEEEeCCCCceeEeeccchh
Confidence 5689999999886433 555443211 11234222 3432 6777 47999999999888
Q ss_pred CCCCCCEEEEEecCCCC
Q 043413 109 HCTVGMKVGIDTLASTS 125 (185)
Q Consensus 109 HC~~GmKl~I~V~~~~~ 125 (185)
+-..|+...|.|.....
T Consensus 135 Q~~~Gl~GalII~~~~~ 151 (596)
T PLN00044 135 HRAAGGYGAITINNRDV 151 (596)
T ss_pred hhhCcCeeEEEEcCccc
Confidence 88889999999987543
No 44
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=73.52 E-value=14 Score=31.83 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=26.4
Q ss_pred EEecCCCcceeEEcCCCCCCCCC---CEEEEEecCC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVG---MKVGIDTLAS 123 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~G---mKl~I~V~~~ 123 (185)
.++.+++|.||..|+. -|..| |.+.|.|...
T Consensus 194 ~~~~~~~G~y~g~C~e--~CG~~Hs~M~~~v~vv~~ 227 (240)
T MTH00023 194 GFFIKRPGVFYGQCSE--ICGANHSFMPIVIEAVSL 227 (240)
T ss_pred EEEcCCCEEEEEEchh--hcCcCccCCeEEEEEECH
Confidence 5678899999999998 88887 9999988753
No 45
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=71.49 E-value=2.8 Score=25.86 Aligned_cols=19 Identities=16% Similarity=0.594 Sum_probs=11.5
Q ss_pred ccccccCCeEecCCeeeee
Q 043413 40 LRTWATSQKFLVGDNLIFQ 58 (185)
Q Consensus 40 Y~~Was~~~f~vGDtLvF~ 58 (185)
|..|..++....||+|.|+
T Consensus 1 ~p~W~~~~~Y~~Gd~V~~~ 19 (41)
T PF02839_consen 1 YPAWDPGTTYNAGDRVSYN 19 (41)
T ss_dssp --B--TTCEE-TT-EEEET
T ss_pred CCCcCCCCEEcCCCEEEEC
Confidence 5679999999999999974
No 46
>PRK11372 lysozyme inhibitor; Provisional
Probab=69.81 E-value=37 Score=25.84 Aligned_cols=17 Identities=12% Similarity=0.262 Sum_probs=11.5
Q ss_pred CCeeeeeecCC-CcEEEE
Q 043413 52 GDNLIFQYPSS-HDVTEV 68 (185)
Q Consensus 52 GDtLvF~y~~~-H~Vv~V 68 (185)
+|.+.|.|+.. +.+.++
T Consensus 50 ~~~v~l~~~~~~~~L~~~ 67 (109)
T PRK11372 50 RQEVSFVYDNQLLHLKQG 67 (109)
T ss_pred CCeEEEEECCEEEEEEEe
Confidence 78888888765 444444
No 47
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=69.48 E-value=25 Score=30.05 Aligned_cols=30 Identities=20% Similarity=0.444 Sum_probs=25.1
Q ss_pred EEecCCCcceeEEcCCCCCCCCC---CEEEEEecC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVG---MKVGIDTLA 122 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~G---mKl~I~V~~ 122 (185)
.++.+++|.||..|+. -|..| |.+.|.|..
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~H~~M~~~v~v~~ 215 (227)
T MTH00098 183 TLMSTRPGLYYGQCSE--ICGSNHSFMPIVLELVP 215 (227)
T ss_pred EEecCCcEEEEEECcc--ccCcCcCCceEEEEEeC
Confidence 5678899999999998 77776 999888765
No 48
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=69.35 E-value=26 Score=29.83 Aligned_cols=30 Identities=23% Similarity=0.435 Sum_probs=25.0
Q ss_pred EEecCCCcceeEEcCCCCCCCCC---CEEEEEecC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVG---MKVGIDTLA 122 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~G---mKl~I~V~~ 122 (185)
.+..+++|.||..|+. -|..| |.+.|.|.+
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00076 183 SFIASRPGVYYGQCSE--ICGANHSFMPIVVEATP 215 (228)
T ss_pred EEEeCCcEEEEEEChh--hcCccccCCceEEEEeC
Confidence 5678899999999998 67665 999998865
No 49
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=69.21 E-value=20 Score=32.37 Aligned_cols=66 Identities=17% Similarity=0.108 Sum_probs=43.5
Q ss_pred CCeEecCCeeeeeecCC---CcEEEEcCcCcccccCCCCccccCCCC---cEEecCCCcceeEEcCCCCCCCCC---CEE
Q 043413 46 SQKFLVGDNLIFQYPSS---HDVTEVSKPDYDSCQTSNKIKSYTDGN---TVIPLSSPGKRYFICGAPGHCTVG---MKV 116 (185)
Q Consensus 46 ~~~f~vGDtLvF~y~~~---H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~---~~v~L~~~G~~YFiC~~~~HC~~G---mKl 116 (185)
...+-+|-.|.|+-++. |+...=. ....+ ..-.|. ..++.+++|.|+-.|+. .|..| |++
T Consensus 152 eL~iP~g~pV~f~lTS~DViHSF~IP~--------Lg~K~-damPG~~n~l~~~a~~~G~Y~G~CaE--yCG~gHs~M~f 220 (315)
T PRK10525 152 EIAFPANVPVYFKVTSNSVMNSFFIPR--------LGSQI-YAMAGMQTRLHLIANEPGTYDGISAS--YSGPGFSGMKF 220 (315)
T ss_pred cEEEecCCEEEEEEEEchhhhhhhhhh--------hCCee-ecCCCceeEEEEEcCCCEEEEEEChh--hcCccccCCeE
Confidence 35678888888888765 5543211 11101 011332 25778899999999998 88876 999
Q ss_pred EEEecC
Q 043413 117 GIDTLA 122 (185)
Q Consensus 117 ~I~V~~ 122 (185)
.|.|..
T Consensus 221 ~v~v~~ 226 (315)
T PRK10525 221 KAIATP 226 (315)
T ss_pred EEEEEC
Confidence 998763
No 50
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=68.84 E-value=3.9 Score=28.58 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=22.1
Q ss_pred CchhHHHHHHHHHHHHhhhcceeEEEEcC
Q 043413 1 MAVLRTFICVAATAVLIQLSMAANYTVGG 29 (185)
Q Consensus 1 Ma~~~~~~~l~~~all~~~a~A~~~~VGg 29 (185)
||...+++.|+|++|.+-+-.|-+|.=|+
T Consensus 1 MA~Kl~vialLC~aLva~vQ~APQYa~Ge 29 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIVQSAPQYAPGE 29 (65)
T ss_pred CcchhhHHHHHHHHHHHHHhcCcccCCCC
Confidence 88888877777777666555677888887
No 51
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=68.79 E-value=21 Score=30.37 Aligned_cols=31 Identities=19% Similarity=0.418 Sum_probs=25.7
Q ss_pred EEecCCCcceeEEcCCCCCCCCC---CEEEEEecCC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVG---MKVGIDTLAS 123 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~G---mKl~I~V~~~ 123 (185)
.++.+++|.||..|+. -|..| |.+.|.|...
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~~ 216 (227)
T MTH00117 183 SFITTRPGVFYGQCSE--ICGANHSFMPIVVESVPL 216 (227)
T ss_pred EEEEcccceEEEEecc--ccccCccCCeEEEEEcCH
Confidence 5678899999999998 77776 9999988653
No 52
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.
Probab=67.54 E-value=22 Score=28.70 Aligned_cols=24 Identities=29% Similarity=0.645 Sum_probs=19.2
Q ss_pred CeEecCCeeeeeecC--C---CcEEEEcC
Q 043413 47 QKFLVGDNLIFQYPS--S---HDVTEVSK 70 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~--~---H~Vv~Vs~ 70 (185)
..++.||.++|+... . |.|+.+.+
T Consensus 59 ~~~~~GDIVvf~~~~~~~~iihRVi~v~~ 87 (158)
T TIGR02228 59 NDIQVGDVITYKSPGFNTPVTHRVIEINN 87 (158)
T ss_pred CCCCCCCEEEEEECCCCccEEEEEEEEEC
Confidence 468999999999866 3 88888743
No 53
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=67.12 E-value=13 Score=31.83 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=25.7
Q ss_pred EEecCCCcceeEEcCCCCCCCCC---CEEEEEecCC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVG---MKVGIDTLAS 123 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~G---mKl~I~V~~~ 123 (185)
.++.+++|.||..|+. -|..| |.+.|.|...
T Consensus 187 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~i~v~vv~~ 220 (234)
T MTH00051 187 SFFIKRPGVFYGQCSE--ICGANHSFMPIVIEGVSL 220 (234)
T ss_pred EEEeCCCEEEEEEChh--hcCcccccCeeEEEEECH
Confidence 5678899999999998 77776 9999988653
No 54
>PLN02168 copper ion binding / pectinesterase
Probab=62.94 E-value=25 Score=33.80 Aligned_cols=77 Identities=10% Similarity=0.011 Sum_probs=48.6
Q ss_pred CCeEecCCeeeeeecCC---------CcEEEEcCcCccc-ccCCCCccccCCCCc---EEecC-CCcceeEEcCCCCCCC
Q 043413 46 SQKFLVGDNLIFQYPSS---------HDVTEVSKPDYDS-CQTSNKIKSYTDGNT---VIPLS-SPGKRYFICGAPGHCT 111 (185)
Q Consensus 46 ~~~f~vGDtLvF~y~~~---------H~Vv~Vs~~~Yd~-C~~s~~~~~~s~G~~---~v~L~-~~G~~YFiC~~~~HC~ 111 (185)
...++.||+|+.+..+. |-+.+......|. ....-+| ..|.+ .|++. +.|+|||=+-...+-.
T Consensus 58 ~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI---~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~ 134 (545)
T PLN02168 58 LLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPI---LPGTNWTYRFQVKDQIGSYFYFPSLLLQKA 134 (545)
T ss_pred cEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCC---CCCCcEEEEEEeCCCCceEEEecChhhhhh
Confidence 36799999999988654 4443332211122 0001112 23332 67774 7999999998877777
Q ss_pred CCCEEEEEecCCCC
Q 043413 112 VGMKVGIDTLASTS 125 (185)
Q Consensus 112 ~GmKl~I~V~~~~~ 125 (185)
.||...|.|.....
T Consensus 135 ~GL~G~lII~~~~~ 148 (545)
T PLN02168 135 AGGYGAIRIYNPEL 148 (545)
T ss_pred CcceeEEEEcCCcc
Confidence 89999999976543
No 55
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=62.38 E-value=32 Score=33.40 Aligned_cols=75 Identities=11% Similarity=0.131 Sum_probs=46.0
Q ss_pred CCeEecCCeeeeeecCC----CcEE----EEcCcCccc-ccCCCCccccCCCC---cEEecCCCcceeEEcCCCCCCCCC
Q 043413 46 SQKFLVGDNLIFQYPSS----HDVT----EVSKPDYDS-CQTSNKIKSYTDGN---TVIPLSSPGKRYFICGAPGHCTVG 113 (185)
Q Consensus 46 ~~~f~vGDtLvF~y~~~----H~Vv----~Vs~~~Yd~-C~~s~~~~~~s~G~---~~v~L~~~G~~YFiC~~~~HC~~G 113 (185)
...++.||.|+.++.+. ++|. .+. ...|. ...+. .....|. ..|++..+|+|||-|-...+=+.|
T Consensus 77 ~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~-~~~DGvP~vt~--~~I~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~~G 153 (587)
T TIGR01480 77 LLRWREGDTVRLRVTNTLPEDTSIHWHGILLP-FQMDGVPGVSF--AGIAPGETFTYRFPVRQSGTYWYHSHSGFQEQAG 153 (587)
T ss_pred eEEEECCCEEEEEEEcCCCCCceEEcCCCcCC-ccccCCCcccc--cccCCCCeEEEEEECCCCeeEEEecCchhHhhcc
Confidence 36799999999988765 2221 110 00111 11110 0112343 267788999999999887777889
Q ss_pred CEEEEEecCC
Q 043413 114 MKVGIDTLAS 123 (185)
Q Consensus 114 mKl~I~V~~~ 123 (185)
|...|.|...
T Consensus 154 L~G~lIV~~~ 163 (587)
T TIGR01480 154 LYGPLIIDPA 163 (587)
T ss_pred ceEEEEECCC
Confidence 9999999754
No 56
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=61.69 E-value=79 Score=27.67 Aligned_cols=31 Identities=19% Similarity=0.430 Sum_probs=25.9
Q ss_pred EEecCCCcceeEEcCCCCCCCCC---CEEEEEecCC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVG---MKVGIDTLAS 123 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~G---mKl~I~V~~~ 123 (185)
.++.+++|.||-.|+. -|..| |.+.|.|...
T Consensus 217 ~~~~~~~G~y~g~CsE--~CG~~Hs~Mpi~v~vv~~ 250 (262)
T MTH00027 217 GFLIKRPGIFYGQCSE--ICGANHSFMPIVVESVSL 250 (262)
T ss_pred EEEcCCcEEEEEEcch--hcCcCcCCCeEEEEEECH
Confidence 5678899999999998 77776 9999988653
No 57
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=60.16 E-value=12 Score=31.90 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=26.1
Q ss_pred EEecCCCcceeEEcCCCCCCCCC---CEEEEEecCC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVG---MKVGIDTLAS 123 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~G---mKl~I~V~~~ 123 (185)
.++.+++|.||..|+. -|..| |.+.|.|...
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~~ 216 (229)
T MTH00038 183 TFFISRTGLFYGQCSE--ICGANHSFMPIVIESVPF 216 (229)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeCH
Confidence 5678899999999998 78777 9999988653
No 58
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=59.71 E-value=25 Score=28.28 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=27.5
Q ss_pred CeEecCCeeeeeecC-----C-CcEEEEcCcCcccccCCC
Q 043413 47 QKFLVGDNLIFQYPS-----S-HDVTEVSKPDYDSCQTSN 80 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~-----~-H~Vv~Vs~~~Yd~C~~s~ 80 (185)
...+.||.+++.-.. . |..+.++...+-.|+...
T Consensus 74 ~~~q~GDI~I~g~~g~S~G~~GHtgif~~~~~iIhc~y~~ 113 (145)
T PF05382_consen 74 WNLQRGDIFIWGRRGNSAGAGGHTGIFMDNDTIIHCNYGA 113 (145)
T ss_pred ccccCCCEEEEcCCCCCCCCCCeEEEEeCCCcEEEecCCC
Confidence 468999999986642 2 999999888899999743
No 59
>TIGR03511 GldH_lipo gliding motility-associated lipoprotein GldH. Members of this protein family are predicted lipoproteins, exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). Members include GldH, a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family may have gliding motility.
Probab=59.54 E-value=29 Score=28.15 Aligned_cols=27 Identities=22% Similarity=0.501 Sum_probs=12.7
Q ss_pred HHHHHHHHhhhccee-EEE----EcCCCCCCCCC
Q 043413 9 CVAATAVLIQLSMAA-NYT----VGGPNGGWDTA 37 (185)
Q Consensus 9 ~l~~~all~~~a~A~-~~~----VGg~~~GW~~~ 37 (185)
+|+++++|++|-..+ .|. +-+ .||..+
T Consensus 10 ~ll~~~ll~sC~~~~~vy~~y~~~p~--~~W~k~ 41 (156)
T TIGR03511 10 FFLGACVLVSCTENTDVYHSYQSTPH--GGWQKS 41 (156)
T ss_pred HHHHHHHhcccCCCCeEEEEeeECCc--cCcCCC
Confidence 333334555554444 332 333 688853
No 60
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=58.20 E-value=52 Score=28.11 Aligned_cols=30 Identities=23% Similarity=0.521 Sum_probs=24.9
Q ss_pred EEecCCCcceeEEcCCCCCCCCC---CEEEEEecC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVG---MKVGIDTLA 122 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~G---mKl~I~V~~ 122 (185)
.+..+++|.||..|+. -|..| |.+.|.|..
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (230)
T MTH00185 183 TFIISRPGLYYGQCSE--ICGANHSFMPIVVEAVP 215 (230)
T ss_pred EEEeCCcEEEEEEchh--hcCcCcCCCeEEEEEEC
Confidence 4667899999999998 77776 998888765
No 61
>PLN02792 oxidoreductase
Probab=56.84 E-value=27 Score=33.48 Aligned_cols=70 Identities=13% Similarity=0.197 Sum_probs=46.1
Q ss_pred CeEecCCeeeeeecCC---------CcEEEEcC---cC--cccccCCCCccccCCCCc---EEec-CCCcceeEEcCCCC
Q 043413 47 QKFLVGDNLIFQYPSS---------HDVTEVSK---PD--YDSCQTSNKIKSYTDGNT---VIPL-SSPGKRYFICGAPG 108 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~---------H~Vv~Vs~---~~--Yd~C~~s~~~~~~s~G~~---~v~L-~~~G~~YFiC~~~~ 108 (185)
+.++.||+|+.+..+. |-+.+... ++ +..|-+ ..|.+ .|++ ++.|+|||-+-...
T Consensus 49 I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqcPI-------~PG~sftY~F~~~~q~GT~WYHsH~~~ 121 (536)
T PLN02792 49 IRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCPI-------PPGKNYTYDFQVKDQVGSYFYFPSLAV 121 (536)
T ss_pred EEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcCcc-------CCCCcEEEEEEeCCCccceEEecCcch
Confidence 5799999999887653 44544321 11 112322 23432 6777 47999999999887
Q ss_pred CCCCCCEEEEEecCC
Q 043413 109 HCTVGMKVGIDTLAS 123 (185)
Q Consensus 109 HC~~GmKl~I~V~~~ 123 (185)
+-..|+...+.|...
T Consensus 122 q~~~Gl~G~liI~~~ 136 (536)
T PLN02792 122 QKAAGGYGSLRIYSL 136 (536)
T ss_pred hhhcccccceEEeCC
Confidence 777888888877654
No 62
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=55.64 E-value=18 Score=30.99 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=17.7
Q ss_pred CCCCCCccccccCCeEecCCeeeeeec
Q 043413 34 WDTATDLRTWATSQKFLVGDNLIFQYP 60 (185)
Q Consensus 34 W~~~~~Y~~Was~~~f~vGDtLvF~y~ 60 (185)
|..+..+.-....+-.+|||.|...-.
T Consensus 50 ~~~~~~~~Lf~D~rA~~VGDiiTV~i~ 76 (221)
T PRK12407 50 FQPGYNWSLLQDRRAYRVGDILTVILD 76 (221)
T ss_pred ccCCCcccccccccccCCCCEEEEEEE
Confidence 443333344566777899999987664
No 63
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=55.57 E-value=30 Score=32.93 Aligned_cols=75 Identities=16% Similarity=0.168 Sum_probs=44.8
Q ss_pred CeEecCCeeeeeecCC---------CcEEEEcCcCccc--ccCCCCccccCCCCc---EEec-CCCcceeEEcCCCCCCC
Q 043413 47 QKFLVGDNLIFQYPSS---------HDVTEVSKPDYDS--CQTSNKIKSYTDGNT---VIPL-SSPGKRYFICGAPGHCT 111 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~---------H~Vv~Vs~~~Yd~--C~~s~~~~~~s~G~~---~v~L-~~~G~~YFiC~~~~HC~ 111 (185)
..+..||+|+.+..+. |.+.+......|. .-..-++ ..|.+ .|++ +..|+|||=|-.. +..
T Consensus 36 i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI---~PG~s~~Y~f~~~~~~GT~WYHsH~~-~~~ 111 (539)
T TIGR03389 36 LYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPI---QPGQSYVYNFTITGQRGTLWWHAHIS-WLR 111 (539)
T ss_pred EEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCc---CCCCeEEEEEEecCCCeeEEEecCch-hhh
Confidence 6799999999887654 3333321111111 0000011 23433 6676 4899999999985 355
Q ss_pred CCCEEEEEecCCCC
Q 043413 112 VGMKVGIDTLASTS 125 (185)
Q Consensus 112 ~GmKl~I~V~~~~~ 125 (185)
.||...|.|.....
T Consensus 112 ~Gl~G~lIV~~~~~ 125 (539)
T TIGR03389 112 ATVYGAIVILPKPG 125 (539)
T ss_pred ccceEEEEEcCCCC
Confidence 69999999986543
No 64
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=53.70 E-value=16 Score=31.15 Aligned_cols=31 Identities=19% Similarity=0.486 Sum_probs=25.6
Q ss_pred EEecCCCcceeEEcCCCCCCCCC---CEEEEEecCC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVG---MKVGIDTLAS 123 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~G---mKl~I~V~~~ 123 (185)
.++.+++|.||..|+. -|..| |.+.|.|...
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~~ 216 (228)
T MTH00008 183 GFTITRPGVFYGQCSE--ICGANHSFMPIVLEAVDT 216 (228)
T ss_pred EEEeCCCEEEEEEChh--hcCcCccCceeEEEEECH
Confidence 5678899999999998 77766 9999987653
No 65
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=47.94 E-value=15 Score=28.16 Aligned_cols=29 Identities=31% Similarity=0.519 Sum_probs=18.5
Q ss_pred CeEecCCeeeeeecCC-C-cEEEE-cCcCccc
Q 043413 47 QKFLVGDNLIFQYPSS-H-DVTEV-SKPDYDS 75 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~-H-~Vv~V-s~~~Yd~ 75 (185)
+.|++||.|+|+--.+ . =+++| .-..|++
T Consensus 30 ~~ikvGD~I~f~~~~~~~~l~v~V~~i~~Y~s 61 (109)
T cd06555 30 QQIKVGDKILFNDLDTGQQLLVKVVDIRKYDS 61 (109)
T ss_pred hcCCCCCEEEEEEcCCCcEEEEEEEEEEecCC
Confidence 6799999999976443 2 22444 3455554
No 66
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=46.68 E-value=32 Score=33.41 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=43.0
Q ss_pred ccCCeEecCCeeeeeecCC-CcEEEEcCcCcccccCCCC--ccc---cCCCCc-EEecCCCcceeEEc
Q 043413 44 ATSQKFLVGDNLIFQYPSS-HDVTEVSKPDYDSCQTSNK--IKS---YTDGNT-VIPLSSPGKRYFIC 104 (185)
Q Consensus 44 as~~~f~vGDtLvF~y~~~-H~Vv~Vs~~~Yd~C~~s~~--~~~---~s~G~~-~v~L~~~G~~YFiC 104 (185)
-+.++|..-|.+.|+|+.. ..++.+...+.|.-+.+-- ... ..+|++ .|.|.+.|+-|=+|
T Consensus 210 ~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~ 277 (566)
T KOG2315|consen 210 VANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVT 277 (566)
T ss_pred hhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEE
Confidence 4678999999999999988 7777777777777655421 111 124655 78899888866554
No 67
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=46.40 E-value=8.5 Score=27.32 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=12.1
Q ss_pred ccCCeEecCCeeeeeecCC
Q 043413 44 ATSQKFLVGDNLIFQYPSS 62 (185)
Q Consensus 44 as~~~f~vGDtLvF~y~~~ 62 (185)
+....+++||.++|.+...
T Consensus 69 v~~n~L~~GD~~~F~~~~~ 87 (100)
T PF02362_consen 69 VRDNGLKEGDVCVFELIGN 87 (100)
T ss_dssp HHHCT--TT-EEEEEE-SS
T ss_pred HHHcCCCCCCEEEEEEecC
Confidence 4567899999999999764
No 68
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=46.02 E-value=65 Score=32.69 Aligned_cols=13 Identities=38% Similarity=0.692 Sum_probs=5.0
Q ss_pred CCCCCCCCCCCCC
Q 043413 131 PSKPPQASPVAPT 143 (185)
Q Consensus 131 p~~~p~~~p~~~~ 143 (185)
.+.+|.+.|.+++
T Consensus 279 ~s~ppppap~p~~ 291 (830)
T KOG1923|consen 279 GSGPPPPAPLPHT 291 (830)
T ss_pred CCCCCCCCCCCCc
Confidence 3333333344333
No 69
>PLN00115 pollen allergen group 3; Provisional
Probab=45.97 E-value=34 Score=26.65 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=18.1
Q ss_pred CchhHHHHHHHHHHHHhhh---cceeEEEEcC
Q 043413 1 MAVLRTFICVAATAVLIQL---SMAANYTVGG 29 (185)
Q Consensus 1 Ma~~~~~~~l~~~all~~~---a~A~~~~VGg 29 (185)
|+++..++.+++++.|+.. ....+|+|++
T Consensus 1 ~~~~~~~~~~~~~a~l~~~~~~g~~v~F~V~~ 32 (118)
T PLN00115 1 MSSLSFLLLAVALAALFAVGSCATEVTFKVGK 32 (118)
T ss_pred CchhHHHHHHHHHHHHhhhhhcCCceEEEECC
Confidence 7777776666666544433 3345789988
No 70
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=45.57 E-value=19 Score=27.05 Aligned_cols=10 Identities=20% Similarity=0.730 Sum_probs=7.9
Q ss_pred CCCccccccC
Q 043413 37 ATDLRTWATS 46 (185)
Q Consensus 37 ~~~Y~~Was~ 46 (185)
+.+|+.|.+.
T Consensus 48 ~p~Y~PWf~P 57 (91)
T TIGR01165 48 GPDYKPWFSP 57 (91)
T ss_pred CCCCcccccc
Confidence 5679999875
No 71
>PRK11528 hypothetical protein; Provisional
Probab=44.61 E-value=33 Score=29.89 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=22.8
Q ss_pred CCCC-CCCCccccccCCeEecC--------CeeeeeecCCCcEEE
Q 043413 32 GGWD-TATDLRTWATSQKFLVG--------DNLIFQYPSSHDVTE 67 (185)
Q Consensus 32 ~GW~-~~~~Y~~Was~~~f~vG--------DtLvF~y~~~H~Vv~ 67 (185)
.||. ...+|-.|......+-+ +.|+|.+-.+++...
T Consensus 26 ~~w~dis~~yl~W~~~~e~~~~~~~~~~d~~ylelE~g~~~~wGD 70 (254)
T PRK11528 26 GGFANISLNYLDWTSRTTEKSSDKSHKDDFGYLELEGGAGFSWGE 70 (254)
T ss_pred ccccceeehhhhhhccccccccccCCcCCCcEEEEEccccCCeEe
Confidence 4566 56678888887655332 267777776655543
No 72
>PRK09723 putative fimbrial-like adhesin protein; Provisional
Probab=43.50 E-value=2.8e+02 Score=26.26 Aligned_cols=15 Identities=27% Similarity=0.328 Sum_probs=10.4
Q ss_pred hhcceeEEEEcCCCCC
Q 043413 18 QLSMAANYTVGGPNGG 33 (185)
Q Consensus 18 ~~a~A~~~~VGg~~~G 33 (185)
..+....|+||+ ..|
T Consensus 23 ~~~~~~~~~vg~-~~~ 37 (421)
T PRK09723 23 GTDDNVSYIVGN-YYG 37 (421)
T ss_pred cccCceEEEEcc-ccc
Confidence 345577899998 544
No 73
>PF08980 DUF1883: Domain of unknown function (DUF1883); InterPro: IPR015073 This family consist of hypothetical bacterial proteins. ; PDB: 2B1Y_A.
Probab=42.59 E-value=6.2 Score=29.69 Aligned_cols=73 Identities=11% Similarity=0.194 Sum_probs=17.3
Q ss_pred CeEecCCeeeeeecCCCcEEEEcCcCccc-ccCCCC---ccccCCCCcEEecCCCcceeEEcCCCCCCCCC-CEEEEEec
Q 043413 47 QKFLVGDNLIFQYPSSHDVTEVSKPDYDS-CQTSNK---IKSYTDGNTVIPLSSPGKRYFICGAPGHCTVG-MKVGIDTL 121 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~H~Vv~Vs~~~Yd~-C~~s~~---~~~~s~G~~~v~L~~~G~~YFiC~~~~HC~~G-mKl~I~V~ 121 (185)
...+-||+|+.+-+..-||..++...|+. ++.... ...++.-...|++-..|..|.+=.. |++.| -+..|.|.
T Consensus 9 ~~~~~Gd~V~V~ls~~~nV~LMd~~Nf~~y~~g~~~~y~GG~~~~~Pa~i~VP~sG~W~vvID~--~g~~~~~~~si~v~ 86 (94)
T PF08980_consen 9 GHLKRGDTVVVRLSHQANVRLMDDSNFQRYKNGRRFKYIGGVAKRSPARITVPYSGHWNVVIDS--HGQSGEVEHSISVI 86 (94)
T ss_dssp ----TT-------SSS-------HHHHHHHHHHTT---S-----SSS------SSS----------TTSSS---------
T ss_pred hccCCCCEEEEEeCCcccEEEcChhHhhhhccCCcceEEeeecccCceEEECCCCceEEEEEEC--CCCcEEEEEEEEec
Confidence 45788999999999778898888888876 433321 1223333446777778887776666 66566 34566665
No 74
>PF12195 End_beta_barrel: Beta barrel domain of bacteriophage endosialidase; InterPro: IPR024427 This entry represents the beta barrel domain of endosialidases which is nested in a beta propeller domain. This beta barrel domain is approximately 80 amino acids in length and represents one of the two sialic acid binding sites of the enzyme [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=41.69 E-value=15 Score=26.91 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=15.6
Q ss_pred CeEecCCeeeeeecCC------CcEEEE-cCcCcc
Q 043413 47 QKFLVGDNLIFQYPSS------HDVTEV-SKPDYD 74 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~------H~Vv~V-s~~~Yd 74 (185)
.-+.+||.|.|..... -+|..| ++..|-
T Consensus 26 HGl~vGD~VnFsnsa~tGvSG~mTVatVid~ntFT 60 (83)
T PF12195_consen 26 HGLFVGDFVNFSNSAVTGVSGNMTVATVIDANTFT 60 (83)
T ss_dssp ----TT-EEEEES-SSTT--EEEEEEEEEETTEEE
T ss_pred CceeecceEEEeccccccccccEEEEEEecCCcEE
Confidence 3478999999999754 466666 665543
No 75
>CHL00082 psbZ photosystem II protein Z
Probab=41.35 E-value=28 Score=24.32 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=23.3
Q ss_pred CchhHHHHHHHHHHHHhhhcceeEEEEcCCCCCCCCC
Q 043413 1 MAVLRTFICVAATAVLIQLSMAANYTVGGPNGGWDTA 37 (185)
Q Consensus 1 Ma~~~~~~~l~~~all~~~a~A~~~~VGg~~~GW~~~ 37 (185)
|-...++++++++++-+-...+.-+.-.- .+||..+
T Consensus 1 M~i~fQl~v~aLi~~Sf~LVVgVPV~~As-p~~W~~s 36 (62)
T CHL00082 1 MTIAFQLAVFALIATSFLLVIGVPVVFAS-PDGWSSN 36 (62)
T ss_pred CeeHHHHHHHHHHHHHHHHHheeeeEEEC-CCcchhh
Confidence 66667777776665444455566666666 6889853
No 76
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=41.01 E-value=15 Score=26.32 Aligned_cols=13 Identities=38% Similarity=0.779 Sum_probs=10.8
Q ss_pred CCeEecCCeeeee
Q 043413 46 SQKFLVGDNLIFQ 58 (185)
Q Consensus 46 ~~~f~vGDtLvF~ 58 (185)
+..|+|||.|+++
T Consensus 26 DRdf~VGD~L~L~ 38 (72)
T PF12961_consen 26 DRDFQVGDILVLR 38 (72)
T ss_pred CCCCCCCCEEEEE
Confidence 3679999999884
No 77
>PRK02576 psbZ photosystem II reaction center protein Z; Provisional
Probab=40.49 E-value=29 Score=24.28 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=21.6
Q ss_pred CchhHHHHHHHHHHHHhhhcceeEEEEcCCCCCCCC
Q 043413 1 MAVLRTFICVAATAVLIQLSMAANYTVGGPNGGWDT 36 (185)
Q Consensus 1 Ma~~~~~~~l~~~all~~~a~A~~~~VGg~~~GW~~ 36 (185)
|....++++++++++-+-...+.-+.-.- .+||..
T Consensus 1 Mti~fQl~v~aLi~~SfiLVVgVPV~~As-p~gW~~ 35 (62)
T PRK02576 1 MTILFQLALLALVVMSFVLVVGVPVAYAS-PQNWGQ 35 (62)
T ss_pred CeeHHHHHHHHHHHHHHHHHheeeeEEEC-CCcccc
Confidence 66666777666655444444555566556 678864
No 78
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=39.82 E-value=16 Score=27.54 Aligned_cols=8 Identities=38% Similarity=0.522 Sum_probs=4.4
Q ss_pred eEecCCee
Q 043413 48 KFLVGDNL 55 (185)
Q Consensus 48 ~f~vGDtL 55 (185)
+++-||+|
T Consensus 40 tV~~GDTL 47 (103)
T PRK14125 40 TVQEGDTL 47 (103)
T ss_pred EECCCCCH
Confidence 45555555
No 79
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=39.78 E-value=34 Score=19.72 Aligned_cols=17 Identities=18% Similarity=0.077 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHhhhc
Q 043413 4 LRTFICVAATAVLIQLS 20 (185)
Q Consensus 4 ~~~~~~l~~~all~~~a 20 (185)
.++++.++.+++|++++
T Consensus 8 Kkil~~l~a~~~LagCs 24 (25)
T PF08139_consen 8 KKILFPLLALFMLAGCS 24 (25)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 34444444445666654
No 80
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.58 E-value=99 Score=30.10 Aligned_cols=71 Identities=14% Similarity=0.232 Sum_probs=49.8
Q ss_pred CeEecCCeeeeeecCC---------CcEEEEcCcCc-cc-----ccCCCCccccCCCCc---EEecC-CCcceeEEcCCC
Q 043413 47 QKFLVGDNLIFQYPSS---------HDVTEVSKPDY-DS-----CQTSNKIKSYTDGNT---VIPLS-SPGKRYFICGAP 107 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~---------H~Vv~Vs~~~Y-d~-----C~~s~~~~~~s~G~~---~v~L~-~~G~~YFiC~~~ 107 (185)
+.+..||+|+.+..+. |-|.|- +..| |. |-+ ..|.+ .|+++ +.|++||.....
T Consensus 61 I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~-kn~w~DG~~~TqCPI-------~Pg~~~tY~F~v~~q~GT~~yh~h~~ 132 (563)
T KOG1263|consen 61 INAEEGDTIVVNVVNRLDEPFSIHWHGVRQR-KNPWQDGVYITQCPI-------QPGENFTYRFTVKDQIGTLWYHSHVS 132 (563)
T ss_pred EEEEeCCEEEEEEEeCCCCceEEEecccccc-CCccccCCccccCCc-------CCCCeEEEEEEeCCcceeEEEeeccc
Confidence 5688999998877543 444443 1111 11 221 24443 67787 889999999999
Q ss_pred CCCCCCCEEEEEecCCCC
Q 043413 108 GHCTVGMKVGIDTLASTS 125 (185)
Q Consensus 108 ~HC~~GmKl~I~V~~~~~ 125 (185)
-|-..|+...+.|.....
T Consensus 133 ~~Ra~G~~G~liI~~~~~ 150 (563)
T KOG1263|consen 133 WQRATGVFGALIINPRPG 150 (563)
T ss_pred cccccCceeEEEEcCCcc
Confidence 999999999999988876
No 81
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=39.15 E-value=37 Score=29.12 Aligned_cols=31 Identities=19% Similarity=0.429 Sum_probs=25.7
Q ss_pred EEecCCCcceeEEcCCCCCCCCC---CEEEEEecCC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVG---MKVGIDTLAS 123 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~G---mKl~I~V~~~ 123 (185)
.++.+++|.||-.|+. -|..| |.+.|.|...
T Consensus 186 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~~ 219 (231)
T MTH00080 186 CYSFPMPGVFYGQCSE--ICGANHSFMPIAVEVTLL 219 (231)
T ss_pred EEEEcCceEEEEEehh--hcCcCccCCEEEEEEECH
Confidence 5678899999999998 77776 9999988653
No 82
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=38.32 E-value=49 Score=20.71 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=12.8
Q ss_pred CchhHHHHHHHHHHHHh-hhcceeEEEEcC
Q 043413 1 MAVLRTFICVAATAVLI-QLSMAANYTVGG 29 (185)
Q Consensus 1 Ma~~~~~~~l~~~all~-~~a~A~~~~VGg 29 (185)
|..+...|++.+++++. ..+.+-++++.|
T Consensus 1 Mk~l~~a~~l~lLal~~a~~~~pG~ViING 30 (36)
T PF08194_consen 1 MKCLSLAFALLLLALAAAVPATPGNVIING 30 (36)
T ss_pred CceeHHHHHHHHHHHHhcccCCCCeEEECc
Confidence 33333334444433333 234455666665
No 83
>PLN02792 oxidoreductase
Probab=38.18 E-value=1.6e+02 Score=28.38 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=31.0
Q ss_pred EEecCCCcceeEEcCCCCCCCCCCEEEEEecCCCC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVGMKVGIDTLASTS 125 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~~ 125 (185)
+|..+.||..+|=|-...|-..||.+.+.|.....
T Consensus 474 Rf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~ 508 (536)
T PLN02792 474 YVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTH 508 (536)
T ss_pred EEEeeCCEEEeeeEcchhccccceEEEEEEccCCC
Confidence 67899999999999999999999999999886544
No 84
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional
Probab=37.47 E-value=13 Score=30.47 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=13.0
Q ss_pred CCeEecCCeeeeeecC
Q 043413 46 SQKFLVGDNLIFQYPS 61 (185)
Q Consensus 46 ~~~f~vGDtLvF~y~~ 61 (185)
...++.||.|+|+...
T Consensus 48 ~~~~~rGDiVvf~~P~ 63 (176)
T PRK13838 48 DRPVAVGDLVFICPPE 63 (176)
T ss_pred CCCCCCCcEEEEECCc
Confidence 4678999999998654
No 85
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=36.76 E-value=61 Score=19.22 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=21.7
Q ss_pred cEEecCCCcceeEEcCCCCCCCCCCE
Q 043413 90 TVIPLSSPGKRYFICGAPGHCTVGMK 115 (185)
Q Consensus 90 ~~v~L~~~G~~YFiC~~~~HC~~GmK 115 (185)
....++..|..||=.|+...|..|+.
T Consensus 2 ~VWav~~~G~v~~R~Gis~~~P~G~~ 27 (32)
T PF06462_consen 2 QVWAVTSDGSVYFRTGISPSNPEGTS 27 (32)
T ss_pred eEEEEcCCCCEEEECcCCCCCCCCCC
Confidence 35677888999999999999999864
No 86
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=36.56 E-value=1.3e+02 Score=23.90 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=31.3
Q ss_pred eEecCCeeeeee--cCC---CcEEEEcCcCccc--ccCCCCccccCCCCcEEecCCCcceeEEc
Q 043413 48 KFLVGDNLIFQY--PSS---HDVTEVSKPDYDS--CQTSNKIKSYTDGNTVIPLSSPGKRYFIC 104 (185)
Q Consensus 48 ~f~vGDtLvF~y--~~~---H~Vv~Vs~~~Yd~--C~~s~~~~~~s~G~~~v~L~~~G~~YFiC 104 (185)
.+++||.|.|+. +.. ...+.+....... =....-..+..+|.-.|.+.++|.+.+..
T Consensus 146 ~l~~g~~~~~~vl~~GkPl~~a~V~~~~~~~~~~~~~~~~~~~TD~~G~~~~~~~~~G~wli~a 209 (215)
T PF10670_consen 146 KLKAGDPLPFQVLFDGKPLAGAEVEAFSPGGWYDVEHEAKTLKTDANGRATFTLPRPGLWLIRA 209 (215)
T ss_pred cccCCCEEEEEEEECCeEcccEEEEEEECCCccccccceEEEEECCCCEEEEecCCCEEEEEEE
Confidence 468999887765 443 3334442221111 10111223445788899999999876543
No 87
>PRK10883 FtsI repressor; Provisional
Probab=36.47 E-value=1.3e+02 Score=28.16 Aligned_cols=74 Identities=12% Similarity=0.214 Sum_probs=43.1
Q ss_pred CCeEecCCeeeeeecCC---------CcEEEEcCcCcccccCCCCccccCCCCc---EEecC-CCcceeEEcCCCC----
Q 043413 46 SQKFLVGDNLIFQYPSS---------HDVTEVSKPDYDSCQTSNKIKSYTDGNT---VIPLS-SPGKRYFICGAPG---- 108 (185)
Q Consensus 46 ~~~f~vGDtLvF~y~~~---------H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~~---~v~L~-~~G~~YFiC~~~~---- 108 (185)
...++.||+|+.++.+. |.+.+-.. ..+. +......|.+ .|.++ .+|+|||=+-..+
T Consensus 78 tir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g-----~~~~I~PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~ 151 (471)
T PRK10883 78 TIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGG-----PARMMSPNADWAPVLPIRQNAATCWYHANTPNRMAQ 151 (471)
T ss_pred eEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCC-----ccccCCCCCeEEEEEecCCCceeeEEccCCCCchhh
Confidence 36789999999988654 33322111 1111 1111223432 44455 4899999776533
Q ss_pred CCCCCCEEEEEecCCCC
Q 043413 109 HCTVGMKVGIDTLASTS 125 (185)
Q Consensus 109 HC~~GmKl~I~V~~~~~ 125 (185)
+...||...+.|.....
T Consensus 152 qv~~GL~G~lII~d~~~ 168 (471)
T PRK10883 152 HVYNGLAGMWLVEDEVS 168 (471)
T ss_pred hHhcCCeEEEEEeCCcc
Confidence 44579999998876543
No 88
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=36.24 E-value=44 Score=25.18 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhhhcceeEEEEcC
Q 043413 5 RTFICVAATAVLIQLSMAANYTVGG 29 (185)
Q Consensus 5 ~~~~~l~~~all~~~a~A~~~~VGg 29 (185)
++++++++ ++++..++..++.||+
T Consensus 3 k~ll~~~l-allLtgCatqt~~~~~ 26 (97)
T PF06291_consen 3 KLLLAAAL-ALLLTGCATQTFTVGN 26 (97)
T ss_pred HHHHHHHH-HHHHcccceeEEEeCC
Confidence 34444444 4455666678888987
No 89
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=36.14 E-value=22 Score=27.77 Aligned_cols=18 Identities=33% Similarity=0.654 Sum_probs=15.4
Q ss_pred CeEecCCeeeeeecCCCc
Q 043413 47 QKFLVGDNLIFQYPSSHD 64 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~H~ 64 (185)
++|++||.+.|-++..|+
T Consensus 41 ~~f~~GDlvLflpt~~~~ 58 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRNHN 58 (129)
T ss_pred ecCCCCCEEEEEecCCCC
Confidence 469999999999998843
No 90
>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.75 E-value=13 Score=30.70 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=17.7
Q ss_pred eEecCCeeeeeecCC-----CcEEEE
Q 043413 48 KFLVGDNLIFQYPSS-----HDVTEV 68 (185)
Q Consensus 48 ~f~vGDtLvF~y~~~-----H~Vv~V 68 (185)
.+++||.++|+.... |.|+.+
T Consensus 77 p~~vGdivVf~vegR~IPiVHRviK~ 102 (180)
T KOG3342|consen 77 PIRVGDIVVFKVEGREIPIVHRVIKQ 102 (180)
T ss_pred cceeccEEEEEECCccCchhHHHHHH
Confidence 489999999999854 888776
No 91
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=35.71 E-value=38 Score=24.73 Aligned_cols=37 Identities=27% Similarity=0.534 Sum_probs=27.2
Q ss_pred EEEEcCCC--CCCCC-------CCCccccccCCeEecCCeeeeeec
Q 043413 24 NYTVGGPN--GGWDT-------ATDLRTWATSQKFLVGDNLIFQYP 60 (185)
Q Consensus 24 ~~~VGg~~--~GW~~-------~~~Y~~Was~~~f~vGDtLvF~y~ 60 (185)
-+++|+.. ..|+. ..+|..|.....+..|..|.|||-
T Consensus 18 l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~~veyKyv 63 (97)
T cd05810 18 VYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPASTNVEWKCL 63 (97)
T ss_pred EEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCCeEEEEEE
Confidence 37788631 35883 236778988888999999999994
No 92
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=35.61 E-value=47 Score=23.77 Aligned_cols=38 Identities=24% Similarity=0.620 Sum_probs=28.9
Q ss_pred EEEEcCCC--CCCCC-----------CCCccccccCCeEecCCeeeeeecC
Q 043413 24 NYTVGGPN--GGWDT-----------ATDLRTWATSQKFLVGDNLIFQYPS 61 (185)
Q Consensus 24 ~~~VGg~~--~GW~~-----------~~~Y~~Was~~~f~vGDtLvF~y~~ 61 (185)
-++||+.. +.|+. ..+|..|.....+..|..+.|||--
T Consensus 18 v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 18 VYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 47888832 25983 1257899999999999999999964
No 93
>PRK12701 flgH flagellar basal body L-ring protein; Reviewed
Probab=35.00 E-value=65 Score=27.78 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=17.9
Q ss_pred CCCCCCccccccCCeEecCCeeeeeec
Q 043413 34 WDTATDLRTWATSQKFLVGDNLIFQYP 60 (185)
Q Consensus 34 W~~~~~Y~~Was~~~f~vGDtLvF~y~ 60 (185)
|.......-....+-.+|||.|...-.
T Consensus 54 ~~~~~~~~Lf~D~rA~~VGDiiTV~i~ 80 (230)
T PRK12701 54 YSSETALPLFETPRARHPGDILTVYLI 80 (230)
T ss_pred ccCCCCcccccccccccCCCEEEEEEE
Confidence 554333344566778999999987664
No 94
>smart00495 ChtBD3 Chitin-binding domain type 3.
Probab=34.35 E-value=25 Score=21.46 Aligned_cols=18 Identities=17% Similarity=0.554 Sum_probs=13.3
Q ss_pred ccccccCCeEecCCeeee
Q 043413 40 LRTWATSQKFLVGDNLIF 57 (185)
Q Consensus 40 Y~~Was~~~f~vGDtLvF 57 (185)
|..|..++.-..||+|.|
T Consensus 1 ~~~W~~~~~Y~~Gd~V~~ 18 (41)
T smart00495 1 APAWQAGTVYTAGDVVSY 18 (41)
T ss_pred CCccCCCCcCcCCCEEEE
Confidence 456777777778888876
No 95
>PF02157 Man-6-P_recep: Mannose-6-phosphate receptor; PDB: 2RLB_A 3K42_A 2RL9_A 3K43_A 1C39_A 1M6P_A 3CY4_A 1KEO_B 2RL7_D 2RL8_B ....
Probab=32.36 E-value=15 Score=32.70 Aligned_cols=39 Identities=23% Similarity=0.385 Sum_probs=0.0
Q ss_pred eeEEEEcCCCCCCCCCCCccccccCCeEecCCeeeeeecCC
Q 043413 22 AANYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSS 62 (185)
Q Consensus 22 A~~~~VGg~~~GW~~~~~Y~~Was~~~f~vGDtLvF~y~~~ 62 (185)
....+|-+ ..||..=+||.-|+.--.|. -|-..|-....
T Consensus 210 lYqR~v~g-arG~eqiPN~~fW~~l~~l~-~Dg~~f~crs~ 248 (278)
T PF02157_consen 210 LYQRFVMG-ARGWEQIPNYSFWAGLPSLV-ADGCDFVCRSC 248 (278)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHhc-CchhhhCcCHHHHHhhHHHH-HHHHhheeccc
Confidence 34555555 69999999999998765555 47777766544
No 96
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=32.08 E-value=3.9e+02 Score=25.25 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=15.2
Q ss_pred cc-eeEEcCCCCCCCCCCEEEEEec
Q 043413 98 GK-RYFICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 98 G~-~YFiC~~~~HC~~GmKl~I~V~ 121 (185)
|+ .=|.--.++.-..||||.+.=.
T Consensus 124 Gvi~e~lvk~gdtV~~g~~la~i~~ 148 (457)
T KOG0559|consen 124 GVITELLVKDGDTVTPGQKLAKISP 148 (457)
T ss_pred ceeeEEecCCCCcccCCceeEEecC
Confidence 54 3455556667778899886443
No 97
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=31.94 E-value=1.9e+02 Score=20.60 Aligned_cols=79 Identities=9% Similarity=0.098 Sum_probs=38.9
Q ss_pred ccCCeEecCCeeeeeecCC----CcEEEE-cCcCcccccCCCCcccc-CCCCcEEecCCC---cceeEEcCCCCCCCCC-
Q 043413 44 ATSQKFLVGDNLIFQYPSS----HDVTEV-SKPDYDSCQTSNKIKSY-TDGNTVIPLSSP---GKRYFICGAPGHCTVG- 113 (185)
Q Consensus 44 as~~~f~vGDtLvF~y~~~----H~Vv~V-s~~~Yd~C~~s~~~~~~-s~G~~~v~L~~~---G~~YFiC~~~~HC~~G- 113 (185)
.+..++.+|+.+.|.-... .+|... +....+.. .+ +... .++...+.+.+. ..=.|.|...+....-
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~--~~-~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~ 83 (98)
T cd05762 7 PEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEG--EG-IKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQ 83 (98)
T ss_pred CcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCC--Cc-EEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCcee
Confidence 3567889999998877533 455443 22221111 11 1111 122233333322 2235788776653332
Q ss_pred CEEEEEecCCCC
Q 043413 114 MKVGIDTLASTS 125 (185)
Q Consensus 114 mKl~I~V~~~~~ 125 (185)
..+.|+|.....
T Consensus 84 ~~~~l~V~~~P~ 95 (98)
T cd05762 84 AQVNLTVVDKPD 95 (98)
T ss_pred EEEEEEEecCCC
Confidence 456667765544
No 98
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=30.13 E-value=1e+02 Score=23.28 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=18.3
Q ss_pred CeEecCCeeeeeecCCCcEEEEcCcCcc
Q 043413 47 QKFLVGDNLIFQYPSSHDVTEVSKPDYD 74 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~H~Vv~Vs~~~Yd 74 (185)
..|++||+|.|.=-.+ +-+.++.++|-
T Consensus 57 ~~VkvGD~Vlf~ky~G-~evk~dgeeyl 83 (96)
T COG0234 57 LDVKVGDRVLFGKYAG-TEVKIDGEEYL 83 (96)
T ss_pred cccccCCEEEECccCC-cEEEECCEEEE
Confidence 4699999999975555 44455555543
No 99
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=28.43 E-value=1.6e+02 Score=20.50 Aligned_cols=46 Identities=20% Similarity=0.384 Sum_probs=24.4
Q ss_pred eeeeeecCC-CcEEEE-cCcCcccccCCCCccccCCC-CcEEecCCCcceeEE
Q 043413 54 NLIFQYPSS-HDVTEV-SKPDYDSCQTSNKIKSYTDG-NTVIPLSSPGKRYFI 103 (185)
Q Consensus 54 tLvF~y~~~-H~Vv~V-s~~~Yd~C~~s~~~~~~s~G-~~~v~L~~~G~~YFi 103 (185)
.++|+|..+ ..|..+ +..+++. ..++....+| ...+.|. +|.|.|-
T Consensus 3 ~v~f~~~~~a~~V~v~G~F~~W~~---~~pm~~~~~~~~~~~~L~-~g~y~Yk 51 (79)
T cd02859 3 PTTFVWPGGGKEVYVTGSFDNWKK---KIPLEKSGKGFSATLRLP-PGKYQYK 51 (79)
T ss_pred EEEEEEcCCCcEEEEEEEcCCCCc---cccceECCCCcEEEEEcC-CCCEEEE
Confidence 468999888 888666 4454443 1222222333 1244453 5775443
No 100
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=27.37 E-value=57 Score=23.00 Aligned_cols=37 Identities=24% Similarity=0.611 Sum_probs=26.2
Q ss_pred EEEEcCC--CCCCCC-------CCCccccccCCeEecCCeeeeeec
Q 043413 24 NYTVGGP--NGGWDT-------ATDLRTWATSQKFLVGDNLIFQYP 60 (185)
Q Consensus 24 ~~~VGg~--~~GW~~-------~~~Y~~Was~~~f~vGDtLvF~y~ 60 (185)
-+++|+. -.+|+. ..++..|.....+..|+.|.|||-
T Consensus 17 l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~~~eYKy~ 62 (95)
T cd05808 17 VYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGTAIEYKYI 62 (95)
T ss_pred EEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCCeEEEEEE
Confidence 3677852 236873 235677988888888999999995
No 101
>PRK12696 flgH flagellar basal body L-ring protein; Reviewed
Probab=27.24 E-value=88 Score=27.06 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=14.0
Q ss_pred ccccCCeEecCCeeeeeec
Q 043413 42 TWATSQKFLVGDNLIFQYP 60 (185)
Q Consensus 42 ~Was~~~f~vGDtLvF~y~ 60 (185)
-.+..+-.+|||.|...-.
T Consensus 59 Lf~D~RA~~VGDivTV~i~ 77 (236)
T PRK12696 59 LFADSRARRVGDIVLVKIV 77 (236)
T ss_pred cccccccccCCCEEEEEEE
Confidence 4455677899999987654
No 102
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=27.01 E-value=42 Score=22.88 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=14.8
Q ss_pred CeEecCCeeeeeecCC--CcEEEEcCcCcc
Q 043413 47 QKFLVGDNLIFQYPSS--HDVTEVSKPDYD 74 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~--H~Vv~Vs~~~Yd 74 (185)
-.|+.||.+.|.=..+ |+++......|.
T Consensus 4 Gpf~~GdrVQlTD~Kgr~~Ti~L~~G~~fh 33 (54)
T PF14801_consen 4 GPFRAGDRVQLTDPKGRKHTITLEPGGEFH 33 (54)
T ss_dssp -S--TT-EEEEEETT--EEEEE--TT-EEE
T ss_pred CCCCCCCEEEEccCCCCeeeEEECCCCeEE
Confidence 4699999999998888 666655444443
No 103
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.93 E-value=26 Score=26.95 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=13.1
Q ss_pred ccCCeEecCCeeeeee
Q 043413 44 ATSQKFLVGDNLIFQY 59 (185)
Q Consensus 44 as~~~f~vGDtLvF~y 59 (185)
+....+++||+|+|+=
T Consensus 29 ~krr~ik~GD~IiF~~ 44 (111)
T COG4043 29 PKRRQIKPGDKIIFNG 44 (111)
T ss_pred HhhcCCCCCCEEEEcC
Confidence 3557899999999974
No 104
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=26.64 E-value=73 Score=24.92 Aligned_cols=31 Identities=13% Similarity=0.229 Sum_probs=22.3
Q ss_pred EEecCC-CcceeEEc----CCCCCCCCCCEEEEEec
Q 043413 91 VIPLSS-PGKRYFIC----GAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 91 ~v~L~~-~G~~YFiC----~~~~HC~~GmKl~I~V~ 121 (185)
.|+.++ +|.||+.+ ....+...|+.+.|.+-
T Consensus 121 lv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y 156 (159)
T PF00394_consen 121 LVTADQPPGNYWIRASYQHDSINDPQNGNALAILRY 156 (159)
T ss_dssp EEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEE
T ss_pred EEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEE
Confidence 567777 88999988 33445567888888653
No 105
>PRK12698 flgH flagellar basal body L-ring protein; Reviewed
Probab=26.31 E-value=94 Score=26.64 Aligned_cols=27 Identities=11% Similarity=0.190 Sum_probs=18.2
Q ss_pred CCCCCCccccccCCeEecCCeeeeeec
Q 043413 34 WDTATDLRTWATSQKFLVGDNLIFQYP 60 (185)
Q Consensus 34 W~~~~~Y~~Was~~~f~vGDtLvF~y~ 60 (185)
|..+..+.-.+..+-.+|||.|...-.
T Consensus 49 ~~~~~~~~Lf~D~rA~~VGDivTV~i~ 75 (224)
T PRK12698 49 FQDSQANSLYSDIKAHKVGDIITVVLK 75 (224)
T ss_pred ccCCCccccccccccccCCCeEEEEEE
Confidence 554333445566788999999987654
No 106
>PLN02991 oxidoreductase
Probab=25.88 E-value=3.9e+02 Score=25.83 Aligned_cols=35 Identities=9% Similarity=0.085 Sum_probs=30.0
Q ss_pred EEecCCCcceeEEcCCCCCCCCCCEEEEEecCCCC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVGMKVGIDTLASTS 125 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~~ 125 (185)
+|..+.||..+|=|-+--|-..||.+.+.|.....
T Consensus 481 RF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~ 515 (543)
T PLN02991 481 YVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTST 515 (543)
T ss_pred EEECCCCEEeeeeeCccccccccEEEEEEecCCCC
Confidence 67889999999999998788889999998876554
No 107
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=25.83 E-value=2.9e+02 Score=26.35 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=28.4
Q ss_pred EEecCCCcceeEEcCCCCCCCCCCEEEEEecC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVGMKVGIDTLA 122 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~GmKl~I~V~~ 122 (185)
+|..+.||...|=|-+.-|=..||-+.|....
T Consensus 494 RF~adNPG~W~~HCHi~~H~~~GM~~~~~e~~ 525 (541)
T TIGR03388 494 RFVADNPGVWAFHCHIEPHLHMGMGVVFAEGV 525 (541)
T ss_pred EEECCCCeEeeeeccchhhhhcccEEEEeccc
Confidence 56899999999999999999999999997654
No 108
>KOG3006 consensus Transthyretin and related proteins [Lipid transport and metabolism]
Probab=25.48 E-value=2.4e+02 Score=22.40 Aligned_cols=10 Identities=30% Similarity=0.351 Sum_probs=6.4
Q ss_pred CchhHHHHHH
Q 043413 1 MAVLRTFICV 10 (185)
Q Consensus 1 Ma~~~~~~~l 10 (185)
|+++|++++.
T Consensus 1 m~~~r~l~l~ 10 (132)
T KOG3006|consen 1 MASHRLLLLC 10 (132)
T ss_pred CchhhHHHHH
Confidence 7877765443
No 109
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=25.47 E-value=60 Score=28.10 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=20.1
Q ss_pred cceeEEEEcCCCCCCCCCCCcccccc
Q 043413 20 SMAANYTVGGPNGGWDTATDLRTWAT 45 (185)
Q Consensus 20 a~A~~~~VGg~~~GW~~~~~Y~~Was 45 (185)
.+-..|.+++ ..||..=++++-|.+
T Consensus 221 g~~~n~~~~g-~~g~e~iP~~dfw~~ 245 (268)
T PF09451_consen 221 GSWYNYNRYG-ARGFELIPHFDFWRS 245 (268)
T ss_pred hhheeeccCC-CCCceecccHhHHHh
Confidence 3456899999 899998778888876
No 110
>PF09792 But2: Ubiquitin 3 binding protein But2 C-terminal domain; InterPro: IPR018620 This entry represents a presumed C-terminal domain of ubiquitin 3 binding proteins (But2). But2 is conserved in yeasts. It binds to Uba3 and is involved in the NEDD8 signalling pathway [].
Probab=25.47 E-value=94 Score=24.68 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=26.2
Q ss_pred EEecCCCcceeEEcCCCCCCCCCCEEEEEecCCCC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVGMKVGIDTLASTS 125 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~~ 125 (185)
.+++.. |..|-|... .|..||++...+.....
T Consensus 100 ~~~~~p-G~~y~i~~f--~Cp~g~~v~ye~~~~g~ 131 (143)
T PF09792_consen 100 TFTVSP-GNSYVINTF--PCPAGQAVSYEMSSAGD 131 (143)
T ss_pred ceEECC-CCceEeCcE--eCCCCCEEEEEEEecCC
Confidence 577775 999999974 99999999988877644
No 111
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=25.37 E-value=87 Score=25.95 Aligned_cols=53 Identities=17% Similarity=0.280 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhhcceeEEEEcCCCCCCCC----CCCccccccCCeEecCCeeeeee
Q 043413 6 TFICVAATAVLIQLSMAANYTVGGPNGGWDT----ATDLRTWATSQKFLVGDNLIFQY 59 (185)
Q Consensus 6 ~~~~l~~~all~~~a~A~~~~VGg~~~GW~~----~~~Y~~Was~~~f~vGDtLvF~y 59 (185)
.+++|+++++|.+|+.......-- ..-|.+ ...|..|-....|.-+|...-.|
T Consensus 3 ~i~~l~l~lll~~C~~~~~~~~~~-~~~W~~~~~~P~~ypv~V~~~~~~~~~~~~~~~ 59 (216)
T PF11153_consen 3 KILLLLLLLLLTGCSTNPNEPLQP-YFEWRFGVAAPKHYPVWVTYAYFVDGDGDWYRF 59 (216)
T ss_pred HHHHHHHHHHHHhhcCCCccCCCC-CCccEEEEecCCCCEEEEEEEEEEeCCCcEEEE
Confidence 344444444555555443322112 345774 34577777766666666655333
No 112
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=24.57 E-value=28 Score=26.06 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=27.5
Q ss_pred EEecCCCcceeEEcCCCCCCCCCCEEEEEecC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVGMKVGIDTLA 122 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~GmKl~I~V~~ 122 (185)
.+..+.+|.+.|-|=+-.|=..||-..|.|.+
T Consensus 105 ~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 105 RFRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 56778999999999999999999999999864
No 113
>PLN02835 oxidoreductase
Probab=24.51 E-value=4.1e+02 Score=25.50 Aligned_cols=35 Identities=9% Similarity=0.085 Sum_probs=31.1
Q ss_pred EEecCCCcceeEEcCCCCCCCCCCEEEEEecCCCC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVGMKVGIDTLASTS 125 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~~ 125 (185)
.|..+.||...|=|-+..|=..||-+.+.|.+...
T Consensus 482 rF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~ 516 (539)
T PLN02835 482 LVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVH 516 (539)
T ss_pred EEECcCCEEeeeeecchhhhhcccEEEEEEccCCC
Confidence 67888999999999999999999999999987643
No 114
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=24.29 E-value=34 Score=23.71 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=14.2
Q ss_pred ccccCCeEecCCeeeeeecCC
Q 043413 42 TWATSQKFLVGDNLIFQYPSS 62 (185)
Q Consensus 42 ~Was~~~f~vGDtLvF~y~~~ 62 (185)
+...-..|++||.|.|.+...
T Consensus 36 ~~~~l~~l~~Gd~V~F~~~~~ 56 (70)
T PF11604_consen 36 DPVDLAGLKPGDKVRFTFERT 56 (70)
T ss_dssp TTSEESS-STT-EEEEEEEEE
T ss_pred ChhhhhcCCCCCEEEEEEEEC
Confidence 334446799999999999764
No 115
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=23.85 E-value=43 Score=30.76 Aligned_cols=13 Identities=38% Similarity=0.779 Sum_probs=11.7
Q ss_pred EecCCeeeeeecC
Q 043413 49 FLVGDNLIFQYPS 61 (185)
Q Consensus 49 f~vGDtLvF~y~~ 61 (185)
.+.||.|+|.|+.
T Consensus 135 aq~gD~LvfHYSG 147 (362)
T KOG1546|consen 135 AQPGDSLVFHYSG 147 (362)
T ss_pred CCCCCEEEEEecC
Confidence 6789999999986
No 116
>PRK10861 signal peptidase I; Provisional
Probab=23.61 E-value=2.5e+02 Score=25.43 Aligned_cols=16 Identities=31% Similarity=0.619 Sum_probs=12.5
Q ss_pred CeEecCCeeeeeecCC
Q 043413 47 QKFLVGDNLIFQYPSS 62 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~ 62 (185)
...+.||.|+|++..+
T Consensus 124 ~~p~RGDIVVF~~P~~ 139 (324)
T PRK10861 124 GHPKRGDIVVFKYPED 139 (324)
T ss_pred CCCCCCCEEEEecCCC
Confidence 4568899999998653
No 117
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=23.60 E-value=2.4e+02 Score=20.98 Aligned_cols=28 Identities=18% Similarity=0.099 Sum_probs=19.3
Q ss_pred cCCeEecCCeeeeeecCC-CcEEEEcCcC
Q 043413 45 TSQKFLVGDNLIFQYPSS-HDVTEVSKPD 72 (185)
Q Consensus 45 s~~~f~vGDtLvF~y~~~-H~Vv~Vs~~~ 72 (185)
....+++.|.++.+-..+ .-+++|....
T Consensus 41 ~~~~v~vdg~~ig~l~~g~y~~~~v~pG~ 69 (117)
T PF11008_consen 41 VKPDVYVDGELIGELKNGGYFYVEVPPGK 69 (117)
T ss_pred ccceEEECCEEEEEeCCCeEEEEEECCCc
Confidence 456788999888886666 5556664443
No 118
>PRK10965 multicopper oxidase; Provisional
Probab=23.52 E-value=1.6e+02 Score=28.15 Aligned_cols=72 Identities=8% Similarity=0.089 Sum_probs=44.5
Q ss_pred CeEecCCeeeeeecCC---------CcEEEEcC-cCcccccCCCCccccCCCCc---EEecCC-CcceeEEcCC----CC
Q 043413 47 QKFLVGDNLIFQYPSS---------HDVTEVSK-PDYDSCQTSNKIKSYTDGNT---VIPLSS-PGKRYFICGA----PG 108 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~---------H~Vv~Vs~-~~Yd~C~~s~~~~~~s~G~~---~v~L~~-~G~~YFiC~~----~~ 108 (185)
+.++.||+|+.++.+. |.+.+-.. ++.-.|-+ ..|.+ .|+++. .|+|||=+-. ..
T Consensus 79 Ir~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~~~DG~pq~~I-------~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~ 151 (523)
T PRK10965 79 VRLQRGKAVTVDITNQLPEETTLHWHGLEVPGEVDGGPQGII-------APGGKRTVTFTVDQPAATCWFHPHQHGKTGR 151 (523)
T ss_pred EEEECCCEEEEEEEECCCCCccEEcccccCCCccCCCCCCCC-------CCCCEEEEEeccCCCCceEEEecCCCCCcHH
Confidence 5789999999988654 33322111 11112322 23432 567775 6999998876 34
Q ss_pred CCCCCCEEEEEecCCCC
Q 043413 109 HCTVGMKVGIDTLASTS 125 (185)
Q Consensus 109 HC~~GmKl~I~V~~~~~ 125 (185)
+=..|+-..+.|.....
T Consensus 152 Qv~~GL~G~lIV~d~~~ 168 (523)
T PRK10965 152 QVAMGLAGLVLIEDDES 168 (523)
T ss_pred HHhCcCeEEEEEcCccc
Confidence 45578999999977644
No 119
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=23.06 E-value=1.9e+02 Score=18.65 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=26.3
Q ss_pred CCCcEEecCCCcceeEEcCCCCCCCCCCEEEEEecC
Q 043413 87 DGNTVIPLSSPGKRYFICGAPGHCTVGMKVGIDTLA 122 (185)
Q Consensus 87 ~G~~~v~L~~~G~~YFiC~~~~HC~~GmKl~I~V~~ 122 (185)
.++..+.|+.-|.+.-|=..++ |.-||++.++...
T Consensus 4 ~~~~aiVlT~dGeF~~ik~~~~-~~vG~eI~~~~~~ 38 (56)
T PF12791_consen 4 KKKYAIVLTPDGEFIKIKRKPG-MEVGQEIEFDEKD 38 (56)
T ss_pred cCCEEEEEcCCCcEEEEeCCCC-CcccCEEEEechh
Confidence 4566788998898766655555 9999999887654
No 120
>PF12115 Salp15: Salivary protein of 15kDa inhibits CD4+ T cell activation; InterPro: IPR021971 This is a family of 15kDa salivary proteins from Acari Arachnids that is induced on feeding and assists the parasite to remain attached to its arthropod host. By repressing calcium fluxes triggered by TCR engagement, Salp15 inhibits CD4+ T cell activation. Salp15 shows weak similarity to Inhibin A, a member of the TGF-beta superfamily that inhibits the production of cytokines and the proliferation of T cells.
Probab=23.03 E-value=8.1 Score=29.62 Aligned_cols=73 Identities=21% Similarity=0.358 Sum_probs=36.2
Q ss_pred CCCCccccccCCeEecCCeeeeeecCC-CcEEEEc--CcCcccccCCCCccccCCCCcEEecCC-CcceeEEcC-CCCCC
Q 043413 36 TATDLRTWATSQKFLVGDNLIFQYPSS-HDVTEVS--KPDYDSCQTSNKIKSYTDGNTVIPLSS-PGKRYFICG-APGHC 110 (185)
Q Consensus 36 ~~~~Y~~Was~~~f~vGDtLvF~y~~~-H~Vv~Vs--~~~Yd~C~~s~~~~~~s~G~~~v~L~~-~G~~YFiC~-~~~HC 110 (185)
....|..|..+-.-...+.|.+.-... |....++ .-+|..|++.=. ..++|.+.+++.- .|+ -|+ .+.-|
T Consensus 32 i~~~~p~~i~~~~~~~~~~l~~~C~~~~~~~~~in~~~v~f~~Ctf~C~--~~~~~~~~~~~~Lpdgt---PCg~~~~~C 106 (118)
T PF12115_consen 32 IGVKFPSLIGNCKDALANKLLSICSEKKHYFTKINDKLVDFKNCTFTCK--EHNNGFTNVTLRLPDGT---PCGPNGQTC 106 (118)
T ss_pred ccccCcccCccchHHHHHHHHHHHccccccccccCcccccccCcEEEEE--eccCCCcceeEeCCCCC---ccCCCcCEE
Confidence 334455665553325556666666553 3333232 235777876532 2345555555441 233 566 55556
Q ss_pred CCC
Q 043413 111 TVG 113 (185)
Q Consensus 111 ~~G 113 (185)
+.|
T Consensus 107 ~~G 109 (118)
T PF12115_consen 107 KNG 109 (118)
T ss_pred CCC
Confidence 555
No 121
>COG1430 Uncharacterized conserved protein [Function unknown]
Probab=22.57 E-value=44 Score=26.28 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=16.5
Q ss_pred ccccCCeEecCCeeeeeecC
Q 043413 42 TWATSQKFLVGDNLIFQYPS 61 (185)
Q Consensus 42 ~Was~~~f~vGDtLvF~y~~ 61 (185)
.|++...+++||.|.|....
T Consensus 104 G~~~~~~i~vGd~v~~~~~~ 123 (126)
T COG1430 104 GWAARLGIKVGDRVEFRPLG 123 (126)
T ss_pred CchhhcCCccCCEEEecccC
Confidence 47788899999999998654
No 122
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=22.54 E-value=87 Score=25.03 Aligned_cols=30 Identities=17% Similarity=0.374 Sum_probs=15.7
Q ss_pred EEEcCCCCCCCCCCCccccc-cCCeEecCCeeeee
Q 043413 25 YTVGGPNGGWDTATDLRTWA-TSQKFLVGDNLIFQ 58 (185)
Q Consensus 25 ~~VGg~~~GW~~~~~Y~~Wa-s~~~f~vGDtLvF~ 58 (185)
.+||| ..| ..+..-|- .+..|+.||.|.|.
T Consensus 41 ~kVaD-~Tg---sI~isvW~e~~~~~~PGDIirLt 71 (134)
T KOG3416|consen 41 CKVAD-ETG---SINISVWDEEGCLIQPGDIIRLT 71 (134)
T ss_pred EEEec-ccc---eEEEEEecCcCcccCCccEEEec
Confidence 55777 444 11223332 23567777777664
No 123
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=22.43 E-value=98 Score=22.39 Aligned_cols=37 Identities=19% Similarity=0.544 Sum_probs=24.7
Q ss_pred EEEEcCCC--CCCCC-------CCCccccccCCeEecCC-eeeeeec
Q 043413 24 NYTVGGPN--GGWDT-------ATDLRTWATSQKFLVGD-NLIFQYP 60 (185)
Q Consensus 24 ~~~VGg~~--~GW~~-------~~~Y~~Was~~~f~vGD-tLvF~y~ 60 (185)
-++||+.. ..|+. ..++..|.....+..++ .|.|||-
T Consensus 17 v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~~~ieYKyv 63 (99)
T cd05816 17 VYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDSFPFEYKYI 63 (99)
T ss_pred EEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCCccEEEEEE
Confidence 36788621 35883 34577788777777776 6888885
No 124
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=22.41 E-value=1e+02 Score=27.96 Aligned_cols=11 Identities=27% Similarity=0.395 Sum_probs=7.6
Q ss_pred CCeEecCCeee
Q 043413 46 SQKFLVGDNLI 56 (185)
Q Consensus 46 ~~~f~vGDtLv 56 (185)
..+++.||+|.
T Consensus 62 ~y~Vk~GDTL~ 72 (319)
T PRK10871 62 TYTVKKGDTLF 72 (319)
T ss_pred ceEECCCCHHH
Confidence 35677888774
No 125
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=22.16 E-value=88 Score=22.55 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=12.9
Q ss_pred CeEecCCeeeeeecCCCcEEEE
Q 043413 47 QKFLVGDNLIFQYPSSHDVTEV 68 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~H~Vv~V 68 (185)
.++++||+|.|..+....+.++
T Consensus 41 ~~L~pGq~l~f~~d~~g~L~~L 62 (85)
T PF04225_consen 41 TRLKPGQTLEFQLDEDGQLTAL 62 (85)
T ss_dssp GG--TT-EEEEEE-TTS-EEEE
T ss_pred hhCCCCCEEEEEECCCCCEEEE
Confidence 3699999999999876555554
No 126
>PRK01904 hypothetical protein; Provisional
Probab=21.64 E-value=1.5e+02 Score=24.94 Aligned_cols=9 Identities=0% Similarity=0.265 Sum_probs=5.7
Q ss_pred CeeeeeecC
Q 043413 53 DNLIFQYPS 61 (185)
Q Consensus 53 DtLvF~y~~ 61 (185)
-.|+|+|..
T Consensus 59 hQIv~ry~~ 67 (219)
T PRK01904 59 HQVVVRVSE 67 (219)
T ss_pred eEEEEEEee
Confidence 467777754
No 127
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.64 E-value=66 Score=26.07 Aligned_cols=12 Identities=17% Similarity=0.348 Sum_probs=8.3
Q ss_pred ecCCeeeeeecC
Q 043413 50 LVGDNLIFQYPS 61 (185)
Q Consensus 50 ~vGDtLvF~y~~ 61 (185)
..||.+.|+|..
T Consensus 72 it~dpv~~~f~~ 83 (151)
T COG4704 72 ITGDPVSKSFYG 83 (151)
T ss_pred ccCCchhheeec
Confidence 357888888864
No 128
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=21.56 E-value=63 Score=21.99 Aligned_cols=21 Identities=10% Similarity=0.175 Sum_probs=17.5
Q ss_pred ccccccCCeEecCCeeeeeec
Q 043413 40 LRTWATSQKFLVGDNLIFQYP 60 (185)
Q Consensus 40 Y~~Was~~~f~vGDtLvF~y~ 60 (185)
..+|.....+++||.|+|...
T Consensus 28 ~~k~~~~~~~~~Gd~v~ytit 48 (76)
T PF01345_consen 28 ITKTVNPSTANPGDTVTYTIT 48 (76)
T ss_pred EEEecCCCcccCCCEEEEEEE
Confidence 567788889999999998764
No 129
>COG3627 PhnJ Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=21.31 E-value=93 Score=27.16 Aligned_cols=23 Identities=26% Similarity=0.645 Sum_probs=20.2
Q ss_pred EEecCCCcceeEEcCCCCCCCCC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVG 113 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~G 113 (185)
.+.++..|-+-|+|+.-+||+.-
T Consensus 258 Evi~DD~G~rmfvCSDTD~C~~r 280 (291)
T COG3627 258 EVVLDDKGGRMFVCSDTDFCEQR 280 (291)
T ss_pred eeEEcCCCceEEEecCchHHHhH
Confidence 57788889999999999999864
No 130
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=21.27 E-value=89 Score=21.95 Aligned_cols=15 Identities=27% Similarity=0.538 Sum_probs=13.2
Q ss_pred eEecCCeeeeeecCC
Q 043413 48 KFLVGDNLIFQYPSS 62 (185)
Q Consensus 48 ~f~vGDtLvF~y~~~ 62 (185)
.|++||.|.|.+..+
T Consensus 2 ~~~~Ge~v~~~~~~~ 16 (83)
T PF14326_consen 2 VYRVGERVRFRVTSN 16 (83)
T ss_pred cccCCCEEEEEEEeC
Confidence 588999999999876
No 131
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=20.76 E-value=1.3e+02 Score=24.96 Aligned_cols=55 Identities=18% Similarity=0.277 Sum_probs=24.7
Q ss_pred eEecCCeeeee---ecCCCcEEEEcCcCcccccCC--CCccccCCCCc----EEecCCCcceeEE
Q 043413 48 KFLVGDNLIFQ---YPSSHDVTEVSKPDYDSCQTS--NKIKSYTDGNT----VIPLSSPGKRYFI 103 (185)
Q Consensus 48 ~f~vGDtLvF~---y~~~H~Vv~Vs~~~Yd~C~~s--~~~~~~s~G~~----~v~L~~~G~~YFi 103 (185)
+-.+||.|.+. |..+|+.+-+.-- |..=+-. .-+.....||+ .|++++.|.|+|-
T Consensus 22 KrvvGe~v~V~Adif~DGHD~l~A~l~-~r~~~~~~w~~vpM~~~gnDrW~a~f~~~~~G~~~f~ 85 (187)
T PF11896_consen 22 KRVVGEPVPVSADIFRDGHDALAAELL-WRHPGEREWQEVPMTPLGNDRWEASFTPDRPGRYEFR 85 (187)
T ss_dssp EEETT-EEEEEEEE--SSSS-EEEEEE-EE-TTS-B----B-EESTS-EEEEEEE--SSEEEEEE
T ss_pred eeecCCeEEEEEEEEecCCCcEEEEEE-EECCCCCcceeeccccCCCCEEEEEEECCCceeEEEE
Confidence 46689999886 4566987654210 0000000 11112223665 7899999998663
No 132
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.69 E-value=1.8e+02 Score=28.37 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=32.3
Q ss_pred EEecCCCcceeEEcCCCCCCCCCCEEEEEecCCCC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVGMKVGIDTLASTS 125 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~~ 125 (185)
.|.++.+|...|=|-+..|-..||.+...|.....
T Consensus 506 rf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~ 540 (563)
T KOG1263|consen 506 RFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEE 540 (563)
T ss_pred EEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCc
Confidence 57799999999999999999999999999988876
No 133
>TIGR00849 gutA PTS system, glucitol/sorbitol-specific IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. This family consists only of glucitol-specific transporters, and occur both in Gram-negative and Gram-positive bacteria.The system in E.Coli consists of a IIA protein, and a IIBC protein. This family is specific for the IIA component.
Probab=20.60 E-value=1.2e+02 Score=23.60 Aligned_cols=68 Identities=16% Similarity=0.137 Sum_probs=41.2
Q ss_pred eEecCCeeeeeecCCCcEEEE-cCcCcccccCCCCccccCCCCcEEecCCCcceeEEcCCCCCCCCCCEEEEE
Q 043413 48 KFLVGDNLIFQYPSSHDVTEV-SKPDYDSCQTSNKIKSYTDGNTVIPLSSPGKRYFICGAPGHCTVGMKVGID 119 (185)
Q Consensus 48 ~f~vGDtLvF~y~~~H~Vv~V-s~~~Yd~C~~s~~~~~~s~G~~~v~L~~~G~~YFiC~~~~HC~~GmKl~I~ 119 (185)
.+++||+|++.=.. ..|..| +...-+-++...-+..|++.... .-+|.-|.-....-....|.++.|.
T Consensus 51 ~i~~Gd~l~i~~~~-Y~ItaVG~~a~~NL~~LGHiTi~F~g~~~~---~lpG~I~v~~~~~p~i~~G~~I~i~ 119 (121)
T TIGR00849 51 TLKPGQVFMIGGIA-YPVTAVGDVAEKNLRSLGHITVRFDGSNVA---EFPGTVHVEGKEPPKIKPGSKFSIV 119 (121)
T ss_pred CcCCCCEEEECCEE-EEEEEEhHHHHHHHHhcCCEEEEECCCCCc---ccCCEEEEcCCCCCcCCCCCEEEEE
Confidence 57899998885432 567777 43332223433333334433221 1478888886666778889999885
No 134
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=20.54 E-value=92 Score=22.85 Aligned_cols=38 Identities=21% Similarity=0.520 Sum_probs=27.1
Q ss_pred EEEEcCCC--CCCCCC----------CCccccccCCeEecCCeeeeeecC
Q 043413 24 NYTVGGPN--GGWDTA----------TDLRTWATSQKFLVGDNLIFQYPS 61 (185)
Q Consensus 24 ~~~VGg~~--~GW~~~----------~~Y~~Was~~~f~vGDtLvF~y~~ 61 (185)
-|+||+.. +.|+.. ..|..|.....+..|..|.|||-.
T Consensus 21 l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp~~~~veyK~v~ 70 (103)
T cd05820 21 LYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVPAGTYIEFKFLK 70 (103)
T ss_pred EEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcCCCCcEEEEEEE
Confidence 37788631 358841 357789888888899999999954
No 135
>COG4446 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.48 E-value=78 Score=25.28 Aligned_cols=24 Identities=42% Similarity=0.493 Sum_probs=20.8
Q ss_pred cCCeEecCCeeeeeecCCCcEEEE
Q 043413 45 TSQKFLVGDNLIFQYPSSHDVTEV 68 (185)
Q Consensus 45 s~~~f~vGDtLvF~y~~~H~Vv~V 68 (185)
.++-|..=|-|.|.+..+|+|++|
T Consensus 88 ~Srlf~FVDDlEfyl~~d~~vi~v 111 (141)
T COG4446 88 TSRLFGFVDDLEFYLPQDHNVIWV 111 (141)
T ss_pred HHHHhhcccceEEecCCCCceEEE
Confidence 446688889999999999999999
No 136
>PF02933 CDC48_2: Cell division protein 48 (CDC48), domain 2; InterPro: IPR004201 This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C terminus. The VAT-N domain found in AAA ATPases (IPR003959 from INTERPRO) is a substrate 185-residue recognition domain [].; GO: 0005524 ATP binding; PDB: 1QDN_B 1QCS_A 1CR5_C 3QQ8_A 3HU2_A 3HU1_E 3HU3_A 3QWZ_A 3TIW_B 3QQ7_A ....
Probab=20.48 E-value=1.3e+02 Score=20.10 Aligned_cols=18 Identities=17% Similarity=0.458 Sum_probs=14.0
Q ss_pred cCCeEecCCeeeeeecCC
Q 043413 45 TSQKFLVGDNLIFQYPSS 62 (185)
Q Consensus 45 s~~~f~vGDtLvF~y~~~ 62 (185)
.++.|..||.|.|.|...
T Consensus 15 ~~~pv~~Gd~i~~~~~~~ 32 (64)
T PF02933_consen 15 EGRPVTKGDTIVFPFFGQ 32 (64)
T ss_dssp TTEEEETT-EEEEEETTE
T ss_pred cCCCccCCCEEEEEeCCc
Confidence 357899999999999754
No 137
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=20.05 E-value=86 Score=29.94 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=30.4
Q ss_pred EEecCCCcceeEEcCCCCCCCCCCEEEEEecCCC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVGMKVGIDTLAST 124 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~ 124 (185)
.|..+.||...|-|-+.-|=..||-+.+.|....
T Consensus 502 r~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~ 535 (538)
T TIGR03390 502 RIRVTNPGVWMMHCHILQHMVMGMQTVWVFGDAE 535 (538)
T ss_pred EEEcCCCeeEEEeccchhhhhccceEEEEeCChH
Confidence 5788999999999999999999999999987653
Done!