Query 043413
Match_columns 185
No_of_seqs 145 out of 918
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 07:51:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043413.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043413hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jer_A Cucumber stellacyanin; 100.0 1.9E-42 6.6E-47 272.9 5.8 104 21-125 2-111 (138)
2 1ws8_A Mavicyanin; oxidized fo 100.0 6.7E-40 2.3E-44 249.0 6.5 104 21-125 1-107 (109)
3 1x9u_A Umecyanin; cupredoxin, 100.0 6.2E-39 2.1E-43 246.1 7.1 102 23-125 2-108 (116)
4 2cbp_A Cucumber basic protein; 100.0 8.8E-38 3E-42 232.3 6.2 95 23-121 1-96 (96)
5 1f56_A Plantacyanin; cupredoxi 100.0 1.2E-33 4.1E-38 208.3 7.7 90 23-121 1-91 (91)
6 1qhq_A Protein (auracyanin); e 99.4 5.3E-13 1.8E-17 102.5 8.5 95 21-121 15-139 (140)
7 1bxv_A Plastocyanin; copper pr 99.4 7.3E-13 2.5E-17 93.6 6.5 85 24-121 4-91 (91)
8 1iuz_A Plastocyanin; electron 99.3 3.5E-12 1.2E-16 92.3 6.6 91 23-121 2-98 (98)
9 2cal_A Rusticyanin; iron respi 99.2 1.2E-11 4E-16 97.8 6.6 75 46-121 62-154 (154)
10 1plc_A Plastocyanin; electron 99.2 5.3E-11 1.8E-15 85.8 8.3 90 24-121 2-99 (99)
11 2gim_A Plastocyanin; beta shee 99.2 2.9E-11 1E-15 87.9 6.6 90 24-121 5-105 (106)
12 1kdj_A Plastocyanin; electron 99.2 6.2E-11 2.1E-15 85.7 8.0 90 24-121 2-102 (102)
13 2plt_A Plastocyanin; electron 99.2 3.3E-11 1.1E-15 86.4 5.9 91 23-121 2-98 (98)
14 1pmy_A Pseudoazurin; electron 99.2 7.6E-11 2.6E-15 90.1 8.1 82 28-123 11-95 (123)
15 1paz_A Pseudoazurin precursor; 99.1 1E-10 3.4E-15 89.4 7.2 81 28-122 11-94 (123)
16 1byp_A Protein (plastocyanin); 99.1 1.6E-10 5.3E-15 83.1 7.8 90 24-121 2-99 (99)
17 1b3i_A PETE protein, protein ( 99.1 3.1E-10 1.1E-14 81.3 8.5 88 24-121 4-97 (97)
18 2aan_A Auracyanin A; cupredoxi 99.1 9.5E-10 3.3E-14 84.2 10.7 95 20-121 16-139 (139)
19 3ef4_A Pseudoazurin, blue copp 99.0 4.4E-10 1.5E-14 86.4 7.6 83 27-123 10-96 (124)
20 3erx_A Pseudoazurin; copper pr 99.0 3.2E-10 1.1E-14 86.8 6.2 71 45-122 21-94 (123)
21 1pcs_A Plastocyanin; electron 99.0 8.5E-10 2.9E-14 79.1 7.9 91 23-121 3-98 (98)
22 3tu6_A Pseudoazurin (blue copp 99.0 6.7E-10 2.3E-14 85.6 7.6 84 27-124 11-98 (127)
23 3c75_A Amicyanin; copper prote 98.8 1.2E-08 4E-13 78.3 7.6 69 45-121 60-132 (132)
24 3cvb_A Plastocyanin; cupredoxi 98.7 3.8E-08 1.3E-12 70.8 7.5 89 23-121 3-104 (105)
25 4hci_A Cupredoxin 1; structura 98.7 7.7E-09 2.6E-13 75.0 2.4 66 45-121 28-100 (100)
26 2ov0_A Amicyanin; beta-sandwic 98.6 4.5E-08 1.5E-12 71.7 6.0 82 21-121 17-105 (105)
27 1id2_A Amicyanin; beta barrel, 98.6 5.3E-08 1.8E-12 71.6 6.1 81 22-121 19-106 (106)
28 3ay2_A Lipid modified azurin p 98.5 1.9E-07 6.4E-12 75.1 7.8 91 23-121 43-166 (167)
29 1cuo_A Protein (azurin ISO-2); 98.5 1E-06 3.5E-11 67.7 10.6 90 24-121 4-128 (129)
30 2ux6_A Pseudoazurin; type-1 co 98.5 1.5E-07 5E-12 71.6 5.7 84 24-123 4-93 (122)
31 2iaa_C Azurin; quinoprotein, t 98.3 4.4E-06 1.5E-10 64.1 10.0 90 24-121 3-127 (128)
32 1nwp_A Azurin; electron transp 98.3 1.1E-06 3.6E-11 67.6 6.6 90 24-121 4-128 (128)
33 2ccw_A Azurin II, AZN-2; elect 98.3 3.9E-06 1.3E-10 64.4 8.8 90 24-121 4-128 (129)
34 1iby_A Nitrosocyanin; RED copp 97.7 4E-05 1.4E-09 56.0 5.5 66 45-121 38-111 (112)
35 2cua_A Protein (CUA); CUA cent 97.7 8.3E-05 2.8E-09 57.3 6.6 67 45-122 60-135 (135)
36 1iko_P Ephrin-B2; greek KEY, g 97.5 2E-05 7E-10 64.1 1.3 78 48-125 25-143 (178)
37 3fsa_A Azurin; copper, cupredo 97.3 0.002 6.8E-08 49.5 9.7 87 24-121 4-125 (125)
38 3s8f_B Cytochrome C oxidase su 97.0 0.0022 7.6E-08 51.4 7.4 67 45-122 93-168 (168)
39 3czu_B Ephrin-A1; ATP-binding, 96.8 0.0023 7.9E-08 52.1 6.3 75 47-125 50-163 (182)
40 2dv6_A Nitrite reductase; elec 96.7 0.0016 5.4E-08 57.7 5.0 74 45-125 55-135 (447)
41 2x11_B Ephrin-A5; receptor-sig 96.4 0.0024 8.2E-08 51.8 4.1 78 47-125 52-165 (177)
42 3sbq_A Nitrous-oxide reductase 96.3 0.006 2.1E-07 57.7 6.5 67 45-122 558-637 (638)
43 2vsm_B Ephrin-B2; developmenta 96.1 0.0034 1.2E-07 49.1 3.3 75 48-122 24-139 (140)
44 3d12_B Ephrin-B3; beta propell 95.7 0.01 3.4E-07 46.5 4.4 74 47-121 22-140 (141)
45 1fwx_A Nitrous oxide reductase 95.3 0.024 8.1E-07 53.4 6.3 68 45-123 513-593 (595)
46 1shx_A Ephrin-A5; ephrin signa 95.1 0.024 8.3E-07 44.1 4.8 78 47-124 23-135 (138)
47 2wo3_B Ephrin-A2; transferase- 94.9 0.043 1.5E-06 43.6 5.8 78 47-125 32-146 (157)
48 1fft_B Ubiquinol oxidase; elec 92.2 0.34 1.2E-05 42.2 7.0 65 46-121 152-225 (315)
49 3hb3_B Cytochrome C oxidase su 90.7 0.55 1.9E-05 40.6 6.8 66 47-123 191-265 (298)
50 3hei_B Ephrin-A1; EPH receptor 90.3 0.52 1.8E-05 36.3 5.7 74 47-121 22-131 (132)
51 1cyx_A CYOA; electron transpor 90.2 0.25 8.5E-06 40.7 4.0 65 46-121 42-115 (205)
52 1mzy_A Copper-containing nitri 89.8 0.33 1.1E-05 41.3 4.6 75 47-124 66-154 (333)
53 1oe1_A Dissimilatory copper-co 89.6 0.34 1.2E-05 41.2 4.6 75 47-124 67-154 (336)
54 2gsm_B Cytochrome C oxidase su 88.3 0.59 2E-05 39.5 5.1 65 47-122 173-246 (262)
55 1kbv_A ANIA, major outer membr 87.1 0.58 2E-05 39.9 4.4 75 46-123 71-157 (327)
56 1v54_B Cytochrome C oxidase po 86.7 0.97 3.3E-05 37.4 5.4 30 91-122 183-215 (227)
57 2zoo_A Probable nitrite reduct 84.5 0.74 2.5E-05 40.5 3.8 76 46-124 61-148 (442)
58 3gdc_A Multicopper oxidase; be 83.9 1.9 6.6E-05 35.9 6.0 79 46-125 67-157 (288)
59 2bw4_A Copper-containing nitri 82.8 1.2 4E-05 37.9 4.3 75 47-124 73-160 (340)
60 1mzy_A Copper-containing nitri 82.0 3.7 0.00013 34.7 7.1 35 91-125 286-321 (333)
61 1oe1_A Dissimilatory copper-co 78.9 1.8 6E-05 36.7 4.1 35 91-125 286-321 (336)
62 3g5w_A Multicopper oxidase typ 73.8 6.3 0.00021 33.4 6.1 76 47-124 36-127 (318)
63 3kw8_A Laccase, putative coppe 73.5 3.5 0.00012 34.1 4.4 35 91-125 231-268 (276)
64 3cg8_A Laccase; oxidoreductase 73.4 2.1 7.3E-05 36.8 3.1 31 95-125 279-309 (343)
65 1v10_A Laccase; multicopper bl 72.1 6.2 0.00021 35.7 6.0 34 91-124 117-151 (521)
66 2dv6_A Nitrite reductase; elec 71.1 3.6 0.00012 35.9 4.1 74 47-123 197-282 (447)
67 3l6w_A Hemocyanin 1; cupredoxi 69.3 3.8 0.00013 37.8 3.9 73 47-121 413-491 (491)
68 1yel_A AT1G16640; CESG, protei 69.3 1.1 3.9E-05 32.0 0.4 19 44-62 73-91 (104)
69 2j5w_A Ceruloplasmin, ferroxid 68.8 3.3 0.00011 41.0 3.6 76 46-125 633-720 (1065)
70 2zwn_A Two-domain type laccase 68.7 4.3 0.00015 34.6 3.9 76 46-123 36-127 (339)
71 1kbv_A ANIA, major outer membr 68.5 4.4 0.00015 34.3 4.0 35 91-125 275-310 (327)
72 2uxt_A Protein SUFI, SUFI; oxi 66.3 3 0.0001 37.1 2.6 72 47-125 52-141 (451)
73 1aoz_A Ascorbate oxidase; oxid 64.9 24 0.00081 32.0 8.3 78 46-125 35-126 (552)
74 2yev_B Cytochrome C oxidase su 68.6 1.3 4.6E-05 38.2 0.0 67 47-124 143-218 (337)
75 2zoo_A Probable nitrite reduct 63.9 7.7 0.00026 33.9 4.7 35 91-125 265-300 (442)
76 1zpu_A Iron transport multicop 63.6 10 0.00035 34.5 5.6 78 47-124 36-126 (534)
77 3gdc_A Multicopper oxidase; be 62.9 2.7 9.4E-05 35.0 1.6 32 91-122 257-288 (288)
78 2q9o_A Laccase-1; multicopper 62.9 19 0.00066 32.8 7.3 78 47-124 69-159 (559)
79 4i1k_A B3 domain-containing tr 62.2 2.2 7.5E-05 32.8 0.8 25 44-68 112-137 (146)
80 2xu9_A Laccase; oxidoreductase 60.6 10 0.00035 33.3 5.0 76 47-124 49-137 (439)
81 3g5w_A Multicopper oxidase typ 60.3 13 0.00044 31.4 5.3 34 91-124 239-278 (318)
82 1sdd_A Coagulation factor V; c 59.7 1.3 4.6E-05 37.3 -1.0 76 46-123 216-301 (306)
83 3sqr_A Laccase; multicopper ox 59.2 12 0.0004 34.8 5.3 34 91-124 156-189 (580)
84 3t6v_A Laccase; beta barrel, o 57.6 40 0.0014 30.4 8.4 35 91-125 97-132 (495)
85 3pxl_A Laccase; 4-copper prote 57.0 40 0.0014 30.4 8.3 35 91-125 96-131 (499)
86 3tas_A Small laccase, multi-co 54.1 25 0.00086 29.4 6.1 75 47-128 44-152 (313)
87 3aw5_A Multicopper oxidase; be 53.0 3.9 0.00013 36.4 0.9 72 47-125 40-129 (448)
88 4dny_A Metalloprotease STCE; m 49.3 5.4 0.00018 30.5 1.0 19 50-68 76-95 (126)
89 2j5w_A Ceruloplasmin, ferroxid 47.1 25 0.00084 34.8 5.6 75 46-125 272-359 (1065)
90 1hfu_A Laccase 1; oxidoreducta 46.6 28 0.00097 31.1 5.5 34 91-124 96-130 (503)
91 2bw4_A Copper-containing nitri 45.6 17 0.0006 30.5 3.8 35 91-125 292-327 (340)
92 3zx1_A Oxidoreductase, putativ 44.6 12 0.00041 33.8 2.7 72 47-125 84-174 (481)
93 2r7e_A Coagulation factor VIII 44.2 26 0.0009 33.3 5.1 35 91-125 298-332 (742)
94 3t9w_A Small laccase, multi-co 44.0 62 0.0021 26.9 7.0 30 96-125 130-165 (299)
95 3iuw_A Activating signal coint 43.3 8.9 0.0003 27.1 1.3 14 47-60 36-50 (83)
96 3kw8_A Laccase, putative coppe 42.9 50 0.0017 27.0 6.1 77 47-125 38-143 (276)
97 1whl_A Cylindromatosis tumor s 42.7 23 0.00078 25.3 3.5 15 47-61 6-20 (95)
98 2r7e_B Coagulation factor VIII 39.8 4.8 0.00016 38.6 -0.7 77 46-123 369-457 (770)
99 1qok_A MFE-23 recombinant anti 39.6 13 0.00045 29.5 2.0 12 94-107 114-125 (282)
100 1sdd_A Coagulation factor V; c 39.5 53 0.0018 27.2 5.9 27 98-124 140-168 (306)
101 2r7e_B Coagulation factor VIII 38.6 18 0.0006 34.7 3.0 30 96-125 269-300 (770)
102 3bqu_C 3H6 FAB light chain; be 38.5 6.2 0.00021 29.8 -0.1 13 92-106 100-112 (233)
103 2vgd_A Enxyn11A; glycoside hyd 37.1 12 0.0004 31.1 1.3 45 1-46 1-46 (218)
104 2z0t_A Putative uncharacterize 35.2 10 0.00036 27.9 0.6 11 47-57 32-42 (109)
105 3t9w_A Small laccase, multi-co 35.0 15 0.0005 30.8 1.6 33 94-126 259-291 (299)
106 2hzs_I RNA polymerase II media 34.9 1.2 4.1E-05 24.8 -3.4 17 46-62 4-20 (27)
107 2k75_A Uncharacterized protein 34.8 17 0.0006 25.9 1.8 30 24-59 41-70 (106)
108 1xne_A Hypothetical protein PF 34.6 10 0.00034 28.1 0.5 13 47-59 33-45 (113)
109 2b1y_A Hypothetical protein AT 34.3 6 0.00021 29.2 -0.8 76 48-124 15-94 (104)
110 1sdd_B Coagulation factor V; c 32.0 21 0.00071 33.0 2.2 35 91-125 296-330 (647)
111 3bkj_L WO2 IGG2A FAB fragment 31.4 18 0.00061 27.8 1.5 13 47-59 44-56 (252)
112 2g23_A PHS, phenoxazinone synt 31.0 1.4E+02 0.0049 27.6 7.8 34 91-124 158-196 (612)
113 2qcp_X Cation efflux system pr 30.6 18 0.00063 24.8 1.3 16 47-62 52-67 (80)
114 2vb2_X Copper protein, cation 30.5 18 0.00063 25.3 1.3 20 43-62 56-75 (88)
115 2r7e_A Coagulation factor VIII 29.4 16 0.00054 34.8 1.0 78 47-125 628-714 (742)
116 2l55_A SILB,silver efflux prot 28.0 22 0.00076 24.6 1.3 19 44-62 43-61 (82)
117 3od3_A Blue copper oxidase CUE 26.6 22 0.00075 32.2 1.4 72 47-125 50-139 (488)
118 2z0b_A GDE5, KIAA1434, putativ 24.4 47 0.0016 24.6 2.6 39 23-61 24-75 (131)
119 1wid_A DNA-binding protein RAV 24.3 17 0.00058 27.0 0.1 19 44-62 87-105 (130)
120 3abg_A Bilirubin oxidase; clea 24.1 3.4E+02 0.012 24.4 8.8 75 47-125 71-160 (534)
121 2zwn_A Two-domain type laccase 23.7 77 0.0026 26.6 4.2 34 91-124 240-279 (339)
122 2hd9_A UPF0310 protein PH1033; 23.4 22 0.00074 27.0 0.6 42 32-74 19-72 (145)
123 2kbn_A Conserved protein; nucl 22.3 58 0.002 23.2 2.7 33 23-59 37-71 (109)
124 2l8d_A Lamin-B receptor; DNA b 22.0 60 0.002 22.0 2.5 45 46-95 7-54 (66)
125 2dig_A Lamin-B receptor; tudor 21.6 71 0.0024 21.7 2.8 46 46-95 10-57 (68)
126 1ed7_A Chitinase A1, (CHBD-CHI 20.2 37 0.0013 20.7 1.1 16 42-57 1-16 (45)
No 1
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=1.9e-42 Score=272.91 Aligned_cols=104 Identities=32% Similarity=0.663 Sum_probs=99.1
Q ss_pred ceeEEEEcCCCCCCCCC---CCccccccCCeEecCCeeeeeecCC-CcEEEE-cCcCcccccCCCCccccCCCCcEEec-
Q 043413 21 MAANYTVGGPNGGWDTA---TDLRTWATSQKFLVGDNLIFQYPSS-HDVTEV-SKPDYDSCQTSNKIKSYTDGNTVIPL- 94 (185)
Q Consensus 21 ~A~~~~VGg~~~GW~~~---~~Y~~Was~~~f~vGDtLvF~y~~~-H~Vv~V-s~~~Yd~C~~s~~~~~~s~G~~~v~L- 94 (185)
+|++|+||| +.||+.. .||++|+++++|++||+|+|+|+.+ |+|+|| ++++|+.|+.++++..+++|+++|+|
T Consensus 2 ~a~~~~VGg-~~GW~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~~v~L~ 80 (138)
T 1jer_A 2 QSTVHIVGD-NTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERL 80 (138)
T ss_dssp CCCEEETTG-GGCSSCCSSTTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEEC
T ss_pred CceEEEECC-cCcCcCCCCccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCeEEEec
Confidence 578999999 8999988 7899999999999999999999988 999999 99999999999999999999999999
Q ss_pred CCCcceeEEcCCCCCCCCCCEEEEEecCCCC
Q 043413 95 SSPGKRYFICGAPGHCTVGMKVGIDTLASTS 125 (185)
Q Consensus 95 ~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~~ 125 (185)
+++|++||||++++||++||||+|+|....+
T Consensus 81 ~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~ 111 (138)
T 1jer_A 81 DELGMHYFVCTVGTHCSNGQKLSINVVAANA 111 (138)
T ss_dssp CSSEEEEEECCSTTTGGGTCEEEEEEECCC-
T ss_pred cCCcCEEEEcCCCCccccCCEEEEEEcCCCC
Confidence 9999999999999999999999999998776
No 2
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=100.00 E-value=6.7e-40 Score=248.96 Aligned_cols=104 Identities=45% Similarity=0.880 Sum_probs=97.3
Q ss_pred ceeEEEEcCCCCCCCCC--CCccccccCCeEecCCeeeeeecCC-CcEEEEcCcCcccccCCCCccccCCCCcEEecCCC
Q 043413 21 MAANYTVGGPNGGWDTA--TDLRTWATSQKFLVGDNLIFQYPSS-HDVTEVSKPDYDSCQTSNKIKSYTDGNTVIPLSSP 97 (185)
Q Consensus 21 ~A~~~~VGg~~~GW~~~--~~Y~~Was~~~f~vGDtLvF~y~~~-H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~~~v~L~~~ 97 (185)
+|++|+||| +.||+.+ .||++|+++++|++||+|+|+|..+ |+|+||++++|+.|+.++++..+++|+++|+|+++
T Consensus 1 ~a~~~~VG~-~~GW~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~y~~C~~~~p~~~~~~G~~~v~L~~~ 79 (109)
T 1ws8_A 1 MATVHKVGD-STGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRP 79 (109)
T ss_dssp CCCEEETTG-GGCSCSSSCCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCSS
T ss_pred CCcEEEeCC-CCCccCCCCcChhHhhcCCcCcCCCEEEEeecCCCceEEEEChHHCCcccCCCcccccCCCCEEEEECCC
Confidence 368999999 8999987 8999999999999999999999988 99999999999999999999999999999999999
Q ss_pred cceeEEcCCCCCCCCCCEEEEEecCCCC
Q 043413 98 GKRYFICGAPGHCTVGMKVGIDTLASTS 125 (185)
Q Consensus 98 G~~YFiC~~~~HC~~GmKl~I~V~~~~~ 125 (185)
|++||||++++||++||||+|+|....+
T Consensus 80 G~~yFic~~~gHC~~GmKl~I~V~~~~s 107 (109)
T 1ws8_A 80 GTFYFLCGIPGHCQLGQKVEIKVDPGSS 107 (109)
T ss_dssp EEEEEECCSTTTTTTTCEEEEEECC---
T ss_pred cCEEEECCCCCcccCCCEEEEEEcCCCC
Confidence 9999999999999999999999986654
No 3
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=100.00 E-value=6.2e-39 Score=246.11 Aligned_cols=102 Identities=37% Similarity=0.701 Sum_probs=94.3
Q ss_pred eEEEEcCCCCCCCC---CCCccccccCCeEecCCeeeeeecCC-CcEEEEcCcCcccccCCCCccccCCCCcEEecCCCc
Q 043413 23 ANYTVGGPNGGWDT---ATDLRTWATSQKFLVGDNLIFQYPSS-HDVTEVSKPDYDSCQTSNKIKSYTDGNTVIPLSSPG 98 (185)
Q Consensus 23 ~~~~VGg~~~GW~~---~~~Y~~Was~~~f~vGDtLvF~y~~~-H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~~~v~L~~~G 98 (185)
++|+||| ..||+. ..+|+.|+++++|++||+|+|+|..+ |+|+||++++|+.|+.++++..+++|++.|+|+++|
T Consensus 2 ~~~~VG~-~~GW~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G 80 (116)
T 1x9u_A 2 EDYDVGG-DMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTTG 80 (116)
T ss_dssp CEEETTG-GGCSSCCSSTTHHHHHHTTCCEETTCEEEECCCTTTCCEEEECHHHHHTTCCSSCSEEECSSSEEEECCSCE
T ss_pred eEEEECC-cCcCcCCCCCcchhhccccccCcCCCEEEEEecCCCCeEEEEChhhcCccCCCCCccccCCCCeEEEECCCC
Confidence 4799999 899996 47899999999999999999999988 999999999999999999999999999999999999
Q ss_pred ceeEEcCCCCCCCCCCEEEE-EecCCCC
Q 043413 99 KRYFICGAPGHCTVGMKVGI-DTLASTS 125 (185)
Q Consensus 99 ~~YFiC~~~~HC~~GmKl~I-~V~~~~~ 125 (185)
++||||++++||++||||+| +|....+
T Consensus 81 ~~yFic~~~~HC~~Gmkl~In~V~~~~~ 108 (116)
T 1x9u_A 81 PQYYICTVGDHCRVGQKLSINVVGAGGA 108 (116)
T ss_dssp EEEEECCSTTTTTTTCEEEEEEECC---
T ss_pred CEEEECCCCCccccCCEEEEEEECCCCC
Confidence 99999999999999999999 8876655
No 4
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=8.8e-38 Score=232.27 Aligned_cols=95 Identities=42% Similarity=0.927 Sum_probs=90.9
Q ss_pred eEEEEcCCCCCCCCCCCccccccCCeEecCCeeeeeecCC-CcEEEEcCcCcccccCCCCccccCCCCcEEecCCCccee
Q 043413 23 ANYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSS-HDVTEVSKPDYDSCQTSNKIKSYTDGNTVIPLSSPGKRY 101 (185)
Q Consensus 23 ~~~~VGg~~~GW~~~~~Y~~Was~~~f~vGDtLvF~y~~~-H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~~~v~L~~~G~~Y 101 (185)
++|+||| +.||++ +|++|+++++|++||+|+|+|..+ |+|+||++++|+.|+.++++..+++|++.|+| ++|++|
T Consensus 1 ~~~~VG~-~~GW~~--~y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L-~~g~~y 76 (96)
T 2cbp_A 1 AVYVVGG-SGGWTF--NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKL-PKGQSY 76 (96)
T ss_dssp CEEETTG-GGCSCS--SCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSEEEEEC-CSEEEE
T ss_pred CEEEECC-cCCCcc--ChhhhccCceEcCCCEEEEEecCCCCEEEEECHHHCCccCCCCCcccccCCCeEEEe-cCCCEE
Confidence 4799999 899997 699999999999999999999988 99999999999999999999999999999999 899999
Q ss_pred EEcCCCCCCCCCCEEEEEec
Q 043413 102 FICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 102 FiC~~~~HC~~GmKl~I~V~ 121 (185)
|||++++||++||||+|+|+
T Consensus 77 Fic~~~~HC~~Gmkl~I~Vl 96 (96)
T 2cbp_A 77 FICNFPGHCQSGMKIAVNAL 96 (96)
T ss_dssp EECCSTTTGGGTCEEEEEEC
T ss_pred EEcCCCCccccCCEEEEEEC
Confidence 99999999999999999995
No 5
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=100.00 E-value=1.2e-33 Score=208.26 Aligned_cols=90 Identities=38% Similarity=0.789 Sum_probs=84.7
Q ss_pred eEEEEcCCCCCCCCCCCccccccCCeEecCCeeeeeecCC-CcEEEEcCcCcccccCCCCccccCCCCcEEecCCCccee
Q 043413 23 ANYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSS-HDVTEVSKPDYDSCQTSNKIKSYTDGNTVIPLSSPGKRY 101 (185)
Q Consensus 23 ~~~~VGg~~~GW~~~~~Y~~Was~~~f~vGDtLvF~y~~~-H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~~~v~L~~~G~~Y 101 (185)
++|+| ||+.+ ++|+++++|++||+|+|+|..+ |+|+||++++|+.|+.++++..+++|++.|+|+ +|++|
T Consensus 1 ~~y~V-----gW~~~---~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L~-~g~~y 71 (91)
T 1f56_A 1 AVYNI-----GWSFN---VNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLT-RGQNY 71 (91)
T ss_dssp CEEEE-----ECSSS---CBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEECSSEEEEECC-SEEEE
T ss_pred CEEEE-----eCCCC---CcCcCCccEeCCCEEEEEccCCCCeEEEECHHHcCCcCCCCCcccccCCCcEEEeC-CCCeE
Confidence 36888 69986 8999999999999999999988 999999999999999999999999999999996 89999
Q ss_pred EEcCCCCCCCCCCEEEEEec
Q 043413 102 FICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 102 FiC~~~~HC~~GmKl~I~V~ 121 (185)
|||++++||++||||+|+|.
T Consensus 72 Fic~~~~HC~~Gmkl~I~v~ 91 (91)
T 1f56_A 72 FICSFPGHCGGGMKIAINAK 91 (91)
T ss_dssp EECCSTTTTTTTCEEEEEEC
T ss_pred EEcCCCCccccCCEEEEEEC
Confidence 99999999999999999984
No 6
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=99.41 E-value=5.3e-13 Score=102.46 Aligned_cols=95 Identities=22% Similarity=0.315 Sum_probs=65.0
Q ss_pred ceeEEEEcCCCCCCCCCCCccccccCCeEecCCeeeeeecC-----C-CcEEEEcCc-Ccccc-----------------
Q 043413 21 MAANYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPS-----S-HDVTEVSKP-DYDSC----------------- 76 (185)
Q Consensus 21 ~A~~~~VGg~~~GW~~~~~Y~~Was~~~f~vGDtLvF~y~~-----~-H~Vv~Vs~~-~Yd~C----------------- 76 (185)
..+++.|+-.+++|.|.. ...+++.||+|+|.|.+ . |+++..+.. ++..+
T Consensus 15 ~~~~v~V~~~~~~~~F~P------~~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (140)
T 1qhq_A 15 PAQTVEVRAAPDALAFAQ------TSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPP 88 (140)
T ss_dssp CSEEEEEEBCSSSSSBSC------SEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCT
T ss_pred CCEEEEEEEeCCCceEeC------CeEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccccccCcc
Confidence 446777775124688864 66899999999988854 2 999887422 22111
Q ss_pred cCCCC---ccccCCC---CcEEecCCCcceeEEcCCCCCCCCCCEEEEEec
Q 043413 77 QTSNK---IKSYTDG---NTVIPLSSPGKRYFICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 77 ~~s~~---~~~~s~G---~~~v~L~~~G~~YFiC~~~~HC~~GmKl~I~V~ 121 (185)
+..+. ......| ..+|+++++|.|||+|++.+||..|||+.|+|.
T Consensus 89 ~~~~~~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V~ 139 (140)
T 1qhq_A 89 DTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVT 139 (140)
T ss_dssp TCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred ccccccccceeeCCCceeEEEEEeCCCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence 00000 0112233 346888899999999999999999999999996
No 7
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=99.37 E-value=7.3e-13 Score=93.62 Aligned_cols=85 Identities=21% Similarity=0.339 Sum_probs=61.7
Q ss_pred EEEEcCCCCCCCCCCCccccccCCeEecCCeeeeeecCC--CcEEEEcCcCcccccCCCCccccCCC-CcEEecCCCcce
Q 043413 24 NYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSS--HDVTEVSKPDYDSCQTSNKIKSYTDG-NTVIPLSSPGKR 100 (185)
Q Consensus 24 ~~~VGg~~~GW~~~~~Y~~Was~~~f~vGDtLvF~y~~~--H~Vv~Vs~~~Yd~C~~s~~~~~~s~G-~~~v~L~~~G~~ 100 (185)
++.||+.+.+|.+.. ...++++||+|+|++.+. |+|+......+. ........| ...++++++|.|
T Consensus 4 ~v~~~~~~~~~~f~P------~~i~v~~Gd~V~~~n~~~~~H~v~~~~~~~~~-----~~~~~~~~g~~~~~~f~~~G~y 72 (91)
T 1bxv_A 4 AIKMGADNGMLAFEP------STIEIQAGDTVQWVNNKLAPHNVVVEGQPELS-----HKDLAFSPGETFEATFSEPGTY 72 (91)
T ss_dssp EEEESCTTSCSSEES------SEEEECTTCEEEEEECSSCCEEEEETTCGGGC-----EEEEECSTTCEEEEECCSCEEE
T ss_pred EEEEecCCCccEEeC------CEEEECCCCEEEEEECCCCCcEEEEeCCCccC-----cccceeCCCCEEEEEeCCCEEE
Confidence 566776235677653 567999999999999864 999875432221 011123344 457889999999
Q ss_pred eEEcCCCCCCCCCCEEEEEec
Q 043413 101 YFICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 101 YFiC~~~~HC~~GmKl~I~V~ 121 (185)
+|+|. .||..||+..|.|.
T Consensus 73 ~~~C~--~H~~~gM~g~i~V~ 91 (91)
T 1bxv_A 73 TYYCE--PHRGAGMVGKIVVQ 91 (91)
T ss_dssp EEECT--TTGGGTCEEEEEEC
T ss_pred EEEeC--CCccCCCEEEEEEC
Confidence 99999 69999999999984
No 8
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=99.30 E-value=3.5e-12 Score=92.33 Aligned_cols=91 Identities=23% Similarity=0.320 Sum_probs=64.3
Q ss_pred eEEEEcCCCCCCCCCCCccccccCCeEecCCeeeeeecCC--CcEEEEcC---cCcccccCCCCccccCCCCc-EEecCC
Q 043413 23 ANYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSS--HDVTEVSK---PDYDSCQTSNKIKSYTDGNT-VIPLSS 96 (185)
Q Consensus 23 ~~~~VGg~~~GW~~~~~Y~~Was~~~f~vGDtLvF~y~~~--H~Vv~Vs~---~~Yd~C~~s~~~~~~s~G~~-~v~L~~ 96 (185)
.++.+|+.+.++.|.. +..++++||+|+|.+.+. |+|+..+. ++++.+...........|.+ .+++++
T Consensus 2 ~~V~m~~~~~~~~F~P------~~i~v~~GdtV~~~n~~~~~H~v~~~~~~~p~g~~~~~~~~~~~~~~~g~~~~~tf~~ 75 (98)
T 1iuz_A 2 QIVKLGGDDGSLAFVP------SKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDDYLNSKGETVVRKLST 75 (98)
T ss_dssp EEEEESCTTSCCSEES------SEEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHHCEEEEECSTTCEEEEECCS
T ss_pred EEEEEecCCCCcEEeC------CEEEECCCCEEEEEECCCCCEEEEEeCCCCccccccccccccccccCCCCEEEEEcCC
Confidence 4567766245677654 568999999999999875 99987642 12333322211112344544 788999
Q ss_pred CcceeEEcCCCCCCCCCCEEEEEec
Q 043413 97 PGKRYFICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 97 ~G~~YFiC~~~~HC~~GmKl~I~V~ 121 (185)
+|.|+|+|.. ||+.||+..|.|.
T Consensus 76 ~G~y~y~C~~--H~~~gM~G~I~V~ 98 (98)
T 1iuz_A 76 PGVYGVYCEP--HAGAGMKMTITVQ 98 (98)
T ss_dssp CEEEEEECTT--TGGGTCEEEEEEC
T ss_pred CEEEEEEchh--hccCCCEEEEEEC
Confidence 9999999997 9999999999984
No 9
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=99.23 E-value=1.2e-11 Score=97.76 Aligned_cols=75 Identities=21% Similarity=0.356 Sum_probs=58.0
Q ss_pred CCeEecCCeeeeeecC---C--CcEEEEc-CcCcccccCCCCcc-------ccCCCC---c--EEecCCCcceeEEcCCC
Q 043413 46 SQKFLVGDNLIFQYPS---S--HDVTEVS-KPDYDSCQTSNKIK-------SYTDGN---T--VIPLSSPGKRYFICGAP 107 (185)
Q Consensus 46 ~~~f~vGDtLvF~y~~---~--H~Vv~Vs-~~~Yd~C~~s~~~~-------~~s~G~---~--~v~L~~~G~~YFiC~~~ 107 (185)
..++++||+|+|++.+ . |+++.++ ...|+.|.....+. ....|. . +|++ ++|+|||+|+++
T Consensus 62 ~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~-~pGtY~y~C~~~ 140 (154)
T 2cal_A 62 TLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHP-TAGTYYYVCQIP 140 (154)
T ss_dssp EEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECC-CSEEEEEECCST
T ss_pred EEEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEE-CCceEEEECCCC
Confidence 4789999999999853 2 9999984 56787887554332 123343 2 5678 999999999999
Q ss_pred CCCCCCCEEEEEec
Q 043413 108 GHCTVGMKVGIDTL 121 (185)
Q Consensus 108 ~HC~~GmKl~I~V~ 121 (185)
+||+.||+..|.|.
T Consensus 141 gH~~~GM~G~IiV~ 154 (154)
T 2cal_A 141 GMAATGMFGKIVVK 154 (154)
T ss_dssp TTGGGTCEEEEEEC
T ss_pred CHHHCCCEEEEEEC
Confidence 99999999999984
No 10
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=99.20 E-value=5.3e-11 Score=85.80 Aligned_cols=90 Identities=18% Similarity=0.309 Sum_probs=62.3
Q ss_pred EEEEcCCCCCCCCCCCccccccCCeEecCCeeeeeecCC--CcEEEEcCc---CcccccCC--CCccccCCCC-cEEecC
Q 043413 24 NYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSS--HDVTEVSKP---DYDSCQTS--NKIKSYTDGN-TVIPLS 95 (185)
Q Consensus 24 ~~~VGg~~~GW~~~~~Y~~Was~~~f~vGDtLvF~y~~~--H~Vv~Vs~~---~Yd~C~~s--~~~~~~s~G~-~~v~L~ 95 (185)
++.||+.+.++.+.. +..++++||+|+|++.+. |+|+..+.. +.+.+... ........|. ..++++
T Consensus 2 ~v~m~~~~~~~~F~P------~~i~v~~G~tV~~~n~~~~~H~v~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~tf~ 75 (99)
T 1plc_A 2 DVLLGADDGSLAFVP------SEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFEVALS 75 (99)
T ss_dssp EEEESCTTCCSCEES------SEEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCCBCSTTCEEEEECC
T ss_pred EEEEecCCCcceEeC------CEEEECCCCEEEEEECCCCceEEEEeCCCCcccccccccccccCccccCCCCEEEEEEC
Confidence 466776234566653 568999999999999875 999876431 12222110 1111233444 478999
Q ss_pred CCcceeEEcCCCCCCCCCCEEEEEec
Q 043413 96 SPGKRYFICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 96 ~~G~~YFiC~~~~HC~~GmKl~I~V~ 121 (185)
++|.|+|+|. .||+.||+..|+|.
T Consensus 76 ~~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1plc_A 76 NKGEYSFYCS--PHQGAGMVGKVTVN 99 (99)
T ss_dssp SCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred CCceEEEEcC--CCcccCCEEEEEEC
Confidence 9999999999 69999999999984
No 11
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=99.19 E-value=2.9e-11 Score=87.85 Aligned_cols=90 Identities=20% Similarity=0.211 Sum_probs=61.3
Q ss_pred EEEEcCCCCCCCCCCCccccccCCeEecCCeeeeeecCC--CcEEEEcCcCcc-----cccCCCCccccCCCC-cEEec-
Q 043413 24 NYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSS--HDVTEVSKPDYD-----SCQTSNKIKSYTDGN-TVIPL- 94 (185)
Q Consensus 24 ~~~VGg~~~GW~~~~~Y~~Was~~~f~vGDtLvF~y~~~--H~Vv~Vs~~~Yd-----~C~~s~~~~~~s~G~-~~v~L- 94 (185)
++.||..+.+|.|.. ...++++||+|+|.+... |+|+..+....+ .............|. ..+++
T Consensus 5 ~V~~~~~~~~~~F~P------~~i~v~~Gd~V~~~n~~~~~H~~~~~~~~~~~~~g~~~~~~~~~~~~~~pG~~~~~~f~ 78 (106)
T 2gim_A 5 TVKLGSDKGLLVFEP------AKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSHKQLLMSPGQSTSTTFP 78 (106)
T ss_dssp EEEESCTTCCSSEES------SEEEECTTCEEEEEECSSSCCCBEECSSSSTTCCHHHHHHHCBCSCCCSTTCEEEEECC
T ss_pred EEEEEecCCcceEcC------CEEEECCCCEEEEEECCCCCceEEEeCCCCcccccccchhccccceeeCCCCEEEEEEe
Confidence 567875125677754 567999999999998874 999865322111 000000011233444 47788
Q ss_pred --CCCcceeEEcCCCCCCCCCCEEEEEec
Q 043413 95 --SSPGKRYFICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 95 --~~~G~~YFiC~~~~HC~~GmKl~I~V~ 121 (185)
+++|.|+|+|. .||+.||+..|+|.
T Consensus 79 ~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 105 (106)
T 2gim_A 79 ADAPAGEYTFYCE--PHRGAGMVGKITVA 105 (106)
T ss_dssp TTCCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred cCCCCceEEEEeC--ChhhcCcEEEEEEc
Confidence 89999999999 79999999999996
No 12
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=99.19 E-value=6.2e-11 Score=85.71 Aligned_cols=90 Identities=19% Similarity=0.219 Sum_probs=62.1
Q ss_pred EEEEcCCCCCCCCCCCccccccCCeEecCCeeeeeecCC--CcEEEEcCcCcc----cccCCCCc----cccCCCC-cEE
Q 043413 24 NYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSS--HDVTEVSKPDYD----SCQTSNKI----KSYTDGN-TVI 92 (185)
Q Consensus 24 ~~~VGg~~~GW~~~~~Y~~Was~~~f~vGDtLvF~y~~~--H~Vv~Vs~~~Yd----~C~~s~~~----~~~s~G~-~~v 92 (185)
++.||..+.++.+.. ...++++||+|+|.+.+. |+|+..+...++ .|.....+ .....|. ..+
T Consensus 2 ~V~~g~~~~~~~F~P------~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~ 75 (102)
T 1kdj_A 2 KVEVGDEVGNFKFYP------DSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEPSFKA 75 (102)
T ss_dssp EEEESCTTCCCCEES------SEEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTBCEEEE
T ss_pred EEEEecCCCccEEeC------CEEEECCCCEEEEEECCCCCeEEEEeCcccccccccchhhcccccccceecCCCCEEEE
Confidence 466776234566653 567999999999998874 999875433321 12111111 1233443 478
Q ss_pred ecCCCcceeEEcCCCCCCCCCCEEEEEec
Q 043413 93 PLSSPGKRYFICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 93 ~L~~~G~~YFiC~~~~HC~~GmKl~I~V~ 121 (185)
+++++|.|+|+|. .||..||+..|.|.
T Consensus 76 tf~~~G~y~y~C~--~H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 76 KVSTPGTYTFYCT--PHKSANMKGTLTVK 102 (102)
T ss_dssp CCCSCEEEEEECS--TTGGGTCEEEEEEC
T ss_pred EeCCCeEEEEEeC--CCcccCCeEEEEEC
Confidence 8999999999999 79999999999984
No 13
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=99.17 E-value=3.3e-11 Score=86.44 Aligned_cols=91 Identities=18% Similarity=0.247 Sum_probs=63.1
Q ss_pred eEEEEcCCCCCCCCCCCccccccCCeEecCCeeeeeecCC--CcEEEEcC---cCcccccCCCCccccCCCCc-EEecCC
Q 043413 23 ANYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSS--HDVTEVSK---PDYDSCQTSNKIKSYTDGNT-VIPLSS 96 (185)
Q Consensus 23 ~~~~VGg~~~GW~~~~~Y~~Was~~~f~vGDtLvF~y~~~--H~Vv~Vs~---~~Yd~C~~s~~~~~~s~G~~-~v~L~~ 96 (185)
.++.+|+.+.++.+.. ...++++||+|+|++.+. |+|+..+. .+++.+...........|.+ .+++++
T Consensus 2 ~~V~m~~~~~~~~F~P------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~~~~~~~~~pG~~~~~tf~~ 75 (98)
T 2plt_A 2 ATVKLGADSGALEFVP------KTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGETYSVKLTA 75 (98)
T ss_dssp EEEEESCTTCCSSEES------SEEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEEEECSTTCEEEEECCS
T ss_pred EEEEEecCCCCceEeC------CEEEECCCCEEEEEECCCCceEEEEeCCCCCCccccccccccceecCCCCEEEEEeCC
Confidence 4677875245677654 557899999999999875 99977532 12222211111112334544 788999
Q ss_pred CcceeEEcCCCCCCCCCCEEEEEec
Q 043413 97 PGKRYFICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 97 ~G~~YFiC~~~~HC~~GmKl~I~V~ 121 (185)
+|.|+|+|. .||+.||+..|.|.
T Consensus 76 ~G~y~y~C~--~H~~~gM~G~i~V~ 98 (98)
T 2plt_A 76 AGEYGYYCE--PHQGAGMVGKIIVQ 98 (98)
T ss_dssp CEEEEEECG--GGGGGTCEEEEEEC
T ss_pred CeEEEEEcC--CccccCCeEEEEEC
Confidence 999999999 59999999999984
No 14
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=99.17 E-value=7.6e-11 Score=90.09 Aligned_cols=82 Identities=20% Similarity=0.253 Sum_probs=58.8
Q ss_pred cCCCCCCCCCCCccccccCCeEecCCeeeeeecCC-CcEEEEcCcCcccccCCCCc-cccCCCC-cEEecCCCcceeEEc
Q 043413 28 GGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSS-HDVTEVSKPDYDSCQTSNKI-KSYTDGN-TVIPLSSPGKRYFIC 104 (185)
Q Consensus 28 Gg~~~GW~~~~~Y~~Was~~~f~vGDtLvF~y~~~-H~Vv~Vs~~~Yd~C~~s~~~-~~~s~G~-~~v~L~~~G~~YFiC 104 (185)
|+ ++++.|.. ...++.+||+|+|.+.+. |+|+... .|...+.. .....|. ..++++++|.|+|+|
T Consensus 11 g~-~g~~~F~P------~~i~V~~GdtV~f~n~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C 78 (123)
T 1pmy_A 11 GP-GGMMVFDP------ALVRLKPGDSIKFLPTDKGHNVETIK-----GMAPDGADYVKTTVGQEAVVKFDKEGVYGFKC 78 (123)
T ss_dssp ET-TEEEEEES------SEEEECTTCEEEEECSSSSCCCEECT-----TSSCTTCCCCBCCTTSCEEEECCSCEEEEEEC
T ss_pred cC-CCCceEeC------CEEEECCCCEEEEEECCCCcEEEEec-----ccCCCCccceecCCCCEEEEEeCCCeEEEEEe
Confidence 55 44566653 568999999999999877 9998752 12111110 1112343 478999999999999
Q ss_pred CCCCCCCCCCEEEEEecCC
Q 043413 105 GAPGHCTVGMKVGIDTLAS 123 (185)
Q Consensus 105 ~~~~HC~~GmKl~I~V~~~ 123 (185)
.. ||..||+..|+|...
T Consensus 79 ~~--H~~~gM~G~I~V~~~ 95 (123)
T 1pmy_A 79 AP--HYMMGMVALVVVGDK 95 (123)
T ss_dssp ST--TTTTTCEEEEEESSC
T ss_pred CC--ccccCCEEEEEEcCC
Confidence 95 999999999999754
No 15
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=99.13 E-value=1e-10 Score=89.41 Aligned_cols=81 Identities=20% Similarity=0.242 Sum_probs=57.8
Q ss_pred cCCCCCCCCCCCccccccCCeEecCCeeeeeecCC-CcEEEEcCcCcccccCCCCc-cccCCCC-cEEecCCCcceeEEc
Q 043413 28 GGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSS-HDVTEVSKPDYDSCQTSNKI-KSYTDGN-TVIPLSSPGKRYFIC 104 (185)
Q Consensus 28 Gg~~~GW~~~~~Y~~Was~~~f~vGDtLvF~y~~~-H~Vv~Vs~~~Yd~C~~s~~~-~~~s~G~-~~v~L~~~G~~YFiC 104 (185)
|+ ++++.|.. ...++.+||+|+|.+.+. |+|+... .|...+.. .....|. ..++++++|.|+|+|
T Consensus 11 g~-~g~~~F~P------~~i~V~~GdtV~f~~~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C 78 (123)
T 1paz_A 11 GA-EGAMVFEP------AYIKANPGDTVTFIPVDKGHNVESIK-----DMIPEGAEKFKSKINENYVLTVTQPGAYLVKC 78 (123)
T ss_dssp ET-TEEEEEES------SEEEECTTCEEEEEESSSSCCCEECT-----TCSCTTCCCCBCCTTCCEEEECCSCEEEEEEC
T ss_pred cC-CCCceEeC------CEEEECCCCEEEEEECCCCeEEEEec-----ccCCCCccceecCCCCEEEEEeCCCEEEEEEe
Confidence 55 44466543 568999999999999877 9998641 12111110 0111343 478999999999999
Q ss_pred CCCCCCCCCCEEEEEecC
Q 043413 105 GAPGHCTVGMKVGIDTLA 122 (185)
Q Consensus 105 ~~~~HC~~GmKl~I~V~~ 122 (185)
.. ||..||+..|+|..
T Consensus 79 ~~--H~~~gM~G~I~V~~ 94 (123)
T 1paz_A 79 TP--HYAMGMIALIAVGD 94 (123)
T ss_dssp TT--TGGGTCEEEEEESS
T ss_pred CC--cccCCCEEEEEEcC
Confidence 95 99999999999975
No 16
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=99.13 E-value=1.6e-10 Score=83.15 Aligned_cols=90 Identities=19% Similarity=0.301 Sum_probs=62.3
Q ss_pred EEEEcCCCCCCCCCCCccccccCCeEecCCeeeeeecCC--CcEEEEcC---cCcccccCC--CCccccCCCC-cEEecC
Q 043413 24 NYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSS--HDVTEVSK---PDYDSCQTS--NKIKSYTDGN-TVIPLS 95 (185)
Q Consensus 24 ~~~VGg~~~GW~~~~~Y~~Was~~~f~vGDtLvF~y~~~--H~Vv~Vs~---~~Yd~C~~s--~~~~~~s~G~-~~v~L~ 95 (185)
++.||+.+.++.+.. +..++++||+|+|++.+. |+|+..+. ++++.+... ........|. ..++++
T Consensus 2 ~V~~~~~~~~~~F~P------~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~p~g~~~~~~~~~~~~~~~~~G~~~~~~f~ 75 (99)
T 1byp_A 2 EVLLGSSDGGLAFVP------SDLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDLLNAPGEEYSVTLT 75 (99)
T ss_dssp EEEESCTTSCCSEES------SEEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCCBCSTTCEEEEEEC
T ss_pred EEEEecCCCcceEeC------CEEEECCCCEEEEEECCCCcceEEEeCCCCccccccccccccccceeeCCCCEEEEEeC
Confidence 466775245677653 567899999999999875 99977642 223322111 0011233454 478899
Q ss_pred CCcceeEEcCCCCCCCCCCEEEEEec
Q 043413 96 SPGKRYFICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 96 ~~G~~YFiC~~~~HC~~GmKl~I~V~ 121 (185)
++|.|+|+|. .||+.||+..|+|.
T Consensus 76 ~~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1byp_A 76 EKGTYKFYCA--PHAGAGMVGKVTVN 99 (99)
T ss_dssp SCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred CCcEEEEEcC--CccccCCEEEEEEC
Confidence 9999999999 69999999999984
No 17
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=99.10 E-value=3.1e-10 Score=81.31 Aligned_cols=88 Identities=19% Similarity=0.222 Sum_probs=60.6
Q ss_pred EEEEcCCCCCCCCCCCccccccCCeEecCCeeeeeecCC--CcEEEEcCcC---cccccCCCCccccCCC-CcEEecCCC
Q 043413 24 NYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSS--HDVTEVSKPD---YDSCQTSNKIKSYTDG-NTVIPLSSP 97 (185)
Q Consensus 24 ~~~VGg~~~GW~~~~~Y~~Was~~~f~vGDtLvF~y~~~--H~Vv~Vs~~~---Yd~C~~s~~~~~~s~G-~~~v~L~~~ 97 (185)
++.||+.+.++.+.. +..++++||+|+|.+.+. |+|+..+... .+.+.... .....| ...++++++
T Consensus 4 ~V~~~~~~~~~~F~P------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~tf~~~ 75 (97)
T 1b3i_A 4 QIKMGTDKYAPLYEP------KALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNTK--LAIAPGSFYSVTLGTP 75 (97)
T ss_dssp EEEEEETTTEEEEES------SEEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBCC--CCCSCSCCEEEECCSC
T ss_pred EEEEeccCCccEEeC------CEEEECCCCEEEEEECCCCCeEEEEeCCCCccccccccccc--eecCCCCEEEEEeCCC
Confidence 566765124566543 567999999999999875 9998764321 11111111 122334 357889999
Q ss_pred cceeEEcCCCCCCCCCCEEEEEec
Q 043413 98 GKRYFICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 98 G~~YFiC~~~~HC~~GmKl~I~V~ 121 (185)
|.|+|+|. .||+.||+..|.|.
T Consensus 76 G~y~y~C~--~H~~~gM~G~i~V~ 97 (97)
T 1b3i_A 76 GTYSFYCT--PHRGAGMVGTITVE 97 (97)
T ss_dssp SEEEEECS--STTTTTCEEEEEEC
T ss_pred eEEEEEcc--ChhhcCCEEEEEEC
Confidence 99999999 69999999999984
No 18
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=99.07 E-value=9.5e-10 Score=84.21 Aligned_cols=95 Identities=18% Similarity=0.257 Sum_probs=64.5
Q ss_pred cceeEEEEcCCCCCCCCCCCccccccCCeEecCCeeeeeecC-----CCcEEEEcCc------------------Ccccc
Q 043413 20 SMAANYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPS-----SHDVTEVSKP------------------DYDSC 76 (185)
Q Consensus 20 a~A~~~~VGg~~~GW~~~~~Y~~Was~~~f~vGDtLvF~y~~-----~H~Vv~Vs~~------------------~Yd~C 76 (185)
+...++.||....++.|.. ...+++.||+|+|.|.+ .|+++..... +|..|
T Consensus 16 ~~~~~V~v~~~~~~~~F~p------~~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~p~ 89 (139)
T 2aan_A 16 SGPVTIEIGSKGEELAFDK------TELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYLPA 89 (139)
T ss_dssp -CCEEEEEEBCTTSSSBSC------SEEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTCCS
T ss_pred CcCEEEEEEecCCccEEcC------CeEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhcccccccccCc
Confidence 3445677853234677754 56789999999977643 5999887532 45555
Q ss_pred cCCCC---ccccCCCCc---EEecCCCcceeEEcCCCCCCCCCCEEEEEec
Q 043413 77 QTSNK---IKSYTDGNT---VIPLSSPGKRYFICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 77 ~~s~~---~~~~s~G~~---~v~L~~~G~~YFiC~~~~HC~~GmKl~I~V~ 121 (185)
...+. ......|.+ +|+++++|.|+|+|.+.+||. ||+..|.|.
T Consensus 90 ~~~~~~~~t~~l~pGet~~v~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 90 DKSNIIAESPLANGNETVEVTFTAPAAGTYLYICTVPGHYP-LMQGKLVVN 139 (139)
T ss_dssp CCTTEEEECCCBCTTCEEEEEEECCSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred ccccccccccccCCCCEEEEEEECCCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence 43221 122344543 455568999999999999999 999999984
No 19
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=99.04 E-value=4.4e-10 Score=86.42 Aligned_cols=83 Identities=17% Similarity=0.144 Sum_probs=60.3
Q ss_pred EcCCCC-CCCCCCCccccccCCeEecCCeeeeeecCC-CcEEEEcCcCcccccCCCCc-cccCCCC-cEEecCCCcceeE
Q 043413 27 VGGPNG-GWDTATDLRTWATSQKFLVGDNLIFQYPSS-HDVTEVSKPDYDSCQTSNKI-KSYTDGN-TVIPLSSPGKRYF 102 (185)
Q Consensus 27 VGg~~~-GW~~~~~Y~~Was~~~f~vGDtLvF~y~~~-H~Vv~Vs~~~Yd~C~~s~~~-~~~s~G~-~~v~L~~~G~~YF 102 (185)
+|+ +. ++.|.+ +..++++||+|+|.+++. |||+..+. +-..+.. .....|. .+++++++|.|.|
T Consensus 10 ~g~-~G~~~~F~P------~~i~V~~GDTV~f~n~~~~Hnv~~~~~-----~~p~g~~~~~~~pg~t~s~TF~~~G~y~Y 77 (124)
T 3ef4_A 10 KDD-AGNTMVFQP------GFVKVEAGDTVKFVPTDKSHNAESVRE-----VWPEGVAPVKGGFSKEVVFNAEKEGLYVL 77 (124)
T ss_dssp ECT-TSCEEEEES------SEEEECTTCEEEEECSSSSCCCEECTT-----TSCTTSCCCBCCTTCCEEEECCSSEEEEE
T ss_pred cCC-CCceeEEeC------CEEEECCCCEEEEEECCCCccEEEeCC-----cCCCCccccccCCCCEEEEEeCCCeEEEE
Confidence 455 33 377764 678999999999999877 99987532 1111111 1122343 4889999999999
Q ss_pred EcCCCCCCCCCCEEEEEecCC
Q 043413 103 ICGAPGHCTVGMKVGIDTLAS 123 (185)
Q Consensus 103 iC~~~~HC~~GmKl~I~V~~~ 123 (185)
+|.. ||..||+..|+|...
T Consensus 78 ~C~~--H~~~GM~G~I~V~~p 96 (124)
T 3ef4_A 78 KCAP--HYGMGMVVLVQVGKP 96 (124)
T ss_dssp ECTT--TGGGTCEEEEEESSC
T ss_pred EcCC--CCcCCCEEEEEECCC
Confidence 9985 999999999999763
No 20
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=99.03 E-value=3.2e-10 Score=86.84 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=53.1
Q ss_pred cCCeEecCCeeeeeecCC-CcEEEEcCcCcccccCCCCc-cccCCC-CcEEecCCCcceeEEcCCCCCCCCCCEEEEEec
Q 043413 45 TSQKFLVGDNLIFQYPSS-HDVTEVSKPDYDSCQTSNKI-KSYTDG-NTVIPLSSPGKRYFICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 45 s~~~f~vGDtLvF~y~~~-H~Vv~Vs~~~Yd~C~~s~~~-~~~s~G-~~~v~L~~~G~~YFiC~~~~HC~~GmKl~I~V~ 121 (185)
+..++++||+|+|.+.+. |+|+..+. |...+.. .....| ...++++++|.|+|+|.. ||..||+..|+|.
T Consensus 21 ~~i~V~~GdtV~f~~~~~~H~v~~~~~-----~~P~g~~~f~~~pg~t~s~TF~~pG~y~y~C~~--H~~~GM~G~I~V~ 93 (123)
T 3erx_A 21 AFVRAEPGDVINFVPTDKSHNVEAIKE-----ILPEGVESFKSKINESYTLTVTEPGLYGVKCTP--HFGMGMVGLVQVG 93 (123)
T ss_dssp SEEEECTTEEEEEEESSTTCCCEECTT-----SSCTTCCCCBCCTTCCEEEEECSCEEEEEECGG--GTTTTCEEEEEES
T ss_pred CEEEECCCCEEEEEECCCCceEEEcCC-----cCCCCccceecCCCCEEEEEeCCCeEEEEEeCC--CCcCCcEEEEEEC
Confidence 678999999999999877 99987532 1111110 011123 348899999999999995 9999999999997
Q ss_pred C
Q 043413 122 A 122 (185)
Q Consensus 122 ~ 122 (185)
.
T Consensus 94 ~ 94 (123)
T 3erx_A 94 D 94 (123)
T ss_dssp S
T ss_pred C
Confidence 5
No 21
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=99.02 E-value=8.5e-10 Score=79.11 Aligned_cols=91 Identities=15% Similarity=0.224 Sum_probs=60.8
Q ss_pred eEEEEcCCCCCCCCCCCccccccCCeEecCCeeeeeecCC--CcEEEEcCcC--cccccCCCCccccCCCC-cEEecCCC
Q 043413 23 ANYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSS--HDVTEVSKPD--YDSCQTSNKIKSYTDGN-TVIPLSSP 97 (185)
Q Consensus 23 ~~~~VGg~~~GW~~~~~Y~~Was~~~f~vGDtLvF~y~~~--H~Vv~Vs~~~--Yd~C~~s~~~~~~s~G~-~~v~L~~~ 97 (185)
.++.||..+.++.|.. ...++++||+|+|.+.+. |+|+..+... .+..+..........|. ..++++++
T Consensus 3 ~~V~~~~~~~~~~F~P------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~pg~~~~~~~~~~~~~~pG~~~~~tf~~~ 76 (98)
T 1pcs_A 3 ATVKMGSDSGALVFEP------STVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKGLLFAAGESFTSTFTEP 76 (98)
T ss_dssp EEEEESCTTSCSSEES------SEEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEEEECSTTCEEEEECCSC
T ss_pred EEEEEecCCCccEEeC------CEEEECCCCEEEEEECCCCCcEEEEeCCCCCccccccccccccccCCCCEEEEEcCCC
Confidence 3567776235677653 567999999999998874 9997753210 00011100011223444 47888999
Q ss_pred cceeEEcCCCCCCCCCCEEEEEec
Q 043413 98 GKRYFICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 98 G~~YFiC~~~~HC~~GmKl~I~V~ 121 (185)
|.|+|+|. .||..||+..|.|.
T Consensus 77 G~y~~~C~--~H~~~gM~G~i~V~ 98 (98)
T 1pcs_A 77 GTYTYYCE--PHRGAGMVGKVVVE 98 (98)
T ss_dssp EEEEEECG--GGTTTTCEEEEEEC
T ss_pred eEEEEEcC--CccccCCeEEEEEC
Confidence 99999999 59999999999984
No 22
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=99.01 E-value=6.7e-10 Score=85.55 Aligned_cols=84 Identities=17% Similarity=0.195 Sum_probs=60.0
Q ss_pred EcCCCC-CCCCCCCccccccCCeEecCCeeeeeecCC-CcEEEEcCcCcccccCCCCc-cccCCC-CcEEecCCCcceeE
Q 043413 27 VGGPNG-GWDTATDLRTWATSQKFLVGDNLIFQYPSS-HDVTEVSKPDYDSCQTSNKI-KSYTDG-NTVIPLSSPGKRYF 102 (185)
Q Consensus 27 VGg~~~-GW~~~~~Y~~Was~~~f~vGDtLvF~y~~~-H~Vv~Vs~~~Yd~C~~s~~~-~~~s~G-~~~v~L~~~G~~YF 102 (185)
+|. +. +..|.. +..++++||+|+|.+.+. |+|+..+. +...... .....| ...++++++|.|+|
T Consensus 11 ~g~-~g~~~~F~P------~~i~V~~GDtVtf~n~~~~H~v~~~~~-----~~P~g~~~f~s~pGet~s~TF~~pG~y~y 78 (127)
T 3tu6_A 11 KAA-DGRVMAFEP------AVIRAQPGDTVTFVAKDKGHNSALMKG-----GAPEGAETWKGKINEEITVTLSKPGVYMY 78 (127)
T ss_dssp ECT-TSCEEEEES------SEEEECTTCEEEEECSSSSCCCEECTT-----CSCTTCCCCBCCTTCCCEEECCSCEEEEE
T ss_pred cCC-CCcccEEeC------CEEEECCCCEEEEEECCCCceEEEccC-----cCCCCccceecCCCCEEEEEeCCCeEEEE
Confidence 366 44 466653 678999999999999877 99987532 1111110 011123 34899999999999
Q ss_pred EcCCCCCCCCCCEEEEEecCCC
Q 043413 103 ICGAPGHCTVGMKVGIDTLAST 124 (185)
Q Consensus 103 iC~~~~HC~~GmKl~I~V~~~~ 124 (185)
+|.. ||..||+..|+|....
T Consensus 79 ~C~~--H~~~GM~G~I~V~~~~ 98 (127)
T 3tu6_A 79 QCAP--HVGMGMIGAIVVGEPA 98 (127)
T ss_dssp ECTT--TGGGTCEEEEEESSCT
T ss_pred EeCC--CCcCCcEEEEEECcCC
Confidence 9995 9999999999998654
No 23
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.80 E-value=1.2e-08 Score=78.31 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=49.2
Q ss_pred cCCeEecCCeeeeeecCC--CcEEEEcCcC-cccccCCCCccccCCCC-cEEecCCCcceeEEcCCCCCCCCCCEEEEEe
Q 043413 45 TSQKFLVGDNLIFQYPSS--HDVTEVSKPD-YDSCQTSNKIKSYTDGN-TVIPLSSPGKRYFICGAPGHCTVGMKVGIDT 120 (185)
Q Consensus 45 s~~~f~vGDtLvF~y~~~--H~Vv~Vs~~~-Yd~C~~s~~~~~~s~G~-~~v~L~~~G~~YFiC~~~~HC~~GmKl~I~V 120 (185)
+..++++||+|+|.+.+. |+|+..+... -..-+ ......|. ..++++++|.|+|+|.. |. ||+..|.|
T Consensus 60 ~~i~V~~GdtV~~~N~d~~~H~v~~~~~~~g~~~~~----s~~l~pG~t~~~tF~~~G~y~y~C~~--H~--gM~G~I~V 131 (132)
T 3c75_A 60 PEVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFR----GEMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGKVIV 131 (132)
T ss_dssp SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEE----CCCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEEEEE
T ss_pred CEEEECCCCEEEEEECCCCceEEEEeCCCCCccccc----ccccCCCCEEEEEcCCCEEEEEEeCC--Cc--CCEEEEEE
Confidence 567899999999998775 9997754221 00000 01223443 37888999999999998 86 99999998
Q ss_pred c
Q 043413 121 L 121 (185)
Q Consensus 121 ~ 121 (185)
.
T Consensus 132 ~ 132 (132)
T 3c75_A 132 E 132 (132)
T ss_dssp C
T ss_pred C
Confidence 4
No 24
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=98.71 E-value=3.8e-08 Score=70.80 Aligned_cols=89 Identities=17% Similarity=0.210 Sum_probs=58.6
Q ss_pred eEEEEcCCCCCCCCCCCccccccCCeEecCCeeeeeecCC--CcEEEEcCcCccccc-------CCCCccccCCCC-cEE
Q 043413 23 ANYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSS--HDVTEVSKPDYDSCQ-------TSNKIKSYTDGN-TVI 92 (185)
Q Consensus 23 ~~~~VGg~~~GW~~~~~Y~~Was~~~f~vGDtLvF~y~~~--H~Vv~Vs~~~Yd~C~-------~s~~~~~~s~G~-~~v 92 (185)
.++.||..+.++.+.. ...+++.||+|+|.+... |+|..-... ..+. ..........|. ..+
T Consensus 3 ~~V~~~~~~~~~~f~p------~~i~v~~Gd~V~~~N~~~~~H~v~~~~~~--~~~~~g~~~~~~~~~~~~i~pG~~~~~ 74 (105)
T 3cvb_A 3 FTVKMGADSGLFQFEP------ANVTVHPGDTVKWVNNKLPPHNILFDDKQ--VPGASKELADKLSHSQLMFSPGESYEI 74 (105)
T ss_dssp EEEEESCTTCCSCEES------SEEEECTTEEEEEEECSSCCEEEEECTTS--SGGGCHHHHHHHCEEEEECSTTCEEEE
T ss_pred EEEEEeecCCccEEeC------CEEEEcCCCEEEEEECCCCCCeEEEeCCC--CCcccccccccccccccccCCCCeEEE
Confidence 3567776125566643 457899999999998764 998764221 1110 000001223444 366
Q ss_pred ec---CCCcceeEEcCCCCCCCCCCEEEEEec
Q 043413 93 PL---SSPGKRYFICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 93 ~L---~~~G~~YFiC~~~~HC~~GmKl~I~V~ 121 (185)
++ +++|+|+|.|. .|+..||+..|.|.
T Consensus 75 ~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 104 (105)
T 3cvb_A 75 TFSSDFPAGTYTYYCA--PHRGAGMVGKITVE 104 (105)
T ss_dssp EECTTSCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred EEecCCCCeeEEEEeC--CchhcCCEEEEEEc
Confidence 66 78999999999 59999999999985
No 25
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=98.66 E-value=7.7e-09 Score=74.95 Aligned_cols=66 Identities=17% Similarity=0.193 Sum_probs=46.5
Q ss_pred cCCeEecCCeeeeeecC-C---CcEEEEcCcCcccccCCCCccccCCCC---cEEecCCCcceeEEcCCCCCCCCCCEEE
Q 043413 45 TSQKFLVGDNLIFQYPS-S---HDVTEVSKPDYDSCQTSNKIKSYTDGN---TVIPLSSPGKRYFICGAPGHCTVGMKVG 117 (185)
Q Consensus 45 s~~~f~vGDtLvF~y~~-~---H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~---~~v~L~~~G~~YFiC~~~~HC~~GmKl~ 117 (185)
+..++++||+|.|.+.+ + |++..-+ ...+ .....|. ..|+++++|.|.|+|.. ||..||+..
T Consensus 28 ~~i~v~~G~tV~~~~~n~d~~~H~~~~~~-~~~~--------~~~~pg~~~~~~~t~~~~G~Y~y~C~~--H~~~gM~G~ 96 (100)
T 4hci_A 28 NVITIPINESTTLLLKNKGKSEHTFTIKK-LGID--------VVVESGKEKNITVKPKSAGTYELICRY--HLLKGMEGK 96 (100)
T ss_dssp SEEEECTTSCEEEEEEECSSSCEEEEEGG-GTEE--------EEECTTCEEEEEECCCSCEEEEEECTT--TGGGTCEEE
T ss_pred CEEEECCCCEEEEEEEcCCCceEEEEEec-CCcc--------eeecCCcceeEEEecccCceEEEECcc--ccCCCCEEE
Confidence 56899999999998643 2 7765421 1111 1222333 25677899999999985 999999999
Q ss_pred EEec
Q 043413 118 IDTL 121 (185)
Q Consensus 118 I~V~ 121 (185)
|.|.
T Consensus 97 i~Ve 100 (100)
T 4hci_A 97 VIVK 100 (100)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9984
No 26
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=98.63 E-value=4.5e-08 Score=71.66 Aligned_cols=82 Identities=15% Similarity=0.126 Sum_probs=56.8
Q ss_pred ceeEEEEcCCCCCCCCCCCccccccCCeEecCCeeeeeecCC--CcEEEEcCcC----cccccCCCCccccCCCC-cEEe
Q 043413 21 MAANYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSS--HDVTEVSKPD----YDSCQTSNKIKSYTDGN-TVIP 93 (185)
Q Consensus 21 ~A~~~~VGg~~~GW~~~~~Y~~Was~~~f~vGDtLvF~y~~~--H~Vv~Vs~~~----Yd~C~~s~~~~~~s~G~-~~v~ 93 (185)
.+.++.|.- .+|.+.. ...++++||+|+|.+... |+|...+..+ |+.+ ....|. ..++
T Consensus 17 ~a~~~~V~~--~~~~F~P------~~i~v~~Gd~V~~~N~d~~~H~v~~~~~~~g~~~~~~~-------~~~pG~~~~~t 81 (105)
T 2ov0_A 17 ADGAIVVDI--AKMKYET------PELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGP-------MMKKEQAYSLT 81 (105)
T ss_dssp CTTCEEEEE--ETTEESS------SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEECC-------CBCTTEEEEEE
T ss_pred CCcCEEEEE--eecEEcC------CEEEECCCCEEEEEECCCCCEEEEEcCCCCCccccccc-------ccCCCCEEEEE
Confidence 345555544 3466653 568999999999998766 9997653211 2211 123343 4778
Q ss_pred cCCCcceeEEcCCCCCCCCCCEEEEEec
Q 043413 94 LSSPGKRYFICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 94 L~~~G~~YFiC~~~~HC~~GmKl~I~V~ 121 (185)
++++|.|+|+|.. |. ||+..|.|.
T Consensus 82 f~~~G~y~y~C~~--H~--gM~G~i~V~ 105 (105)
T 2ov0_A 82 FTEAGTYDYHCTP--HP--FMRGKVVVE 105 (105)
T ss_dssp ECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred eCCCEEEEEEeCC--CC--CCEEEEEEC
Confidence 8999999999998 74 999999884
No 27
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=98.62 E-value=5.3e-08 Score=71.62 Aligned_cols=81 Identities=16% Similarity=0.168 Sum_probs=56.2
Q ss_pred eeEEEEcCCCCCCCCCCCccccccCCeEecCCeeeeeecCC--CcEEEEcCcC----cccccCCCCccccCCCC-cEEec
Q 043413 22 AANYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSS--HDVTEVSKPD----YDSCQTSNKIKSYTDGN-TVIPL 94 (185)
Q Consensus 22 A~~~~VGg~~~GW~~~~~Y~~Was~~~f~vGDtLvF~y~~~--H~Vv~Vs~~~----Yd~C~~s~~~~~~s~G~-~~v~L 94 (185)
+.++.|.- .++.|.. +..++++||+|+|.+.+. |+|+..+... |+. .....|. ..+++
T Consensus 19 ~~~~~V~~--~~~~F~P------~~i~V~~G~tV~~~N~d~~~H~v~~~~~~~~~~~~~s-------~~l~~g~~~~~tf 83 (106)
T 1id2_A 19 ADAVVVGI--EKMKYLT------PEVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRG-------EMMTKDQAYAITF 83 (106)
T ss_dssp TTCEEEEE--ETTEESS------SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC-------CCBCTTEEEEEEE
T ss_pred CccEEEEE--EecEEeC------CEEEECCCCEEEEEECCCCcEEEEEeCCCCCcccccc-------cccCCCCEEEEEe
Confidence 34555544 2456543 568999999999998765 9997653221 111 1223443 37888
Q ss_pred CCCcceeEEcCCCCCCCCCCEEEEEec
Q 043413 95 SSPGKRYFICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 95 ~~~G~~YFiC~~~~HC~~GmKl~I~V~ 121 (185)
+++|.|.|+|.. |. ||+..|.|.
T Consensus 84 ~~~G~y~~~C~~--H~--~M~G~I~V~ 106 (106)
T 1id2_A 84 NEAGSYDYFCTP--HP--FMRGKVIVE 106 (106)
T ss_dssp CSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred CCCEEEEEEeCC--CC--CCEEEEEEC
Confidence 999999999998 86 999999984
No 28
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=98.54 E-value=1.9e-07 Score=75.14 Aligned_cols=91 Identities=19% Similarity=0.281 Sum_probs=59.3
Q ss_pred eEEEEcCCCCCCCCCCCccccccCCeE-ecCCeeeee--ecC-------CCcEEEEcCcCcccc---------------c
Q 043413 23 ANYTVGGPNGGWDTATDLRTWATSQKF-LVGDNLIFQ--YPS-------SHDVTEVSKPDYDSC---------------Q 77 (185)
Q Consensus 23 ~~~~VGg~~~GW~~~~~Y~~Was~~~f-~vGDtLvF~--y~~-------~H~Vv~Vs~~~Yd~C---------------~ 77 (185)
.++.|+. ++++.|.. +..++ +.||+|+|. +.+ .|+++..+..+++.- +
T Consensus 43 ~~V~I~~-~d~m~F~P------~~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~v~~~ 115 (167)
T 3ay2_A 43 CAATVES-NDNMQFNT------KDIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDYVKPD 115 (167)
T ss_dssp CEEEEEE-CTTSCBSC------SEEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTTSCTT
T ss_pred eEEEEEe-CCCceEec------ceEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhcccccccccc
Confidence 4677876 56788764 56778 889975554 443 299987754432210 1
Q ss_pred CCCCc---cccCCCCc-EEecC----CCcceeEEcCCCCCCCCCCEEEEEec
Q 043413 78 TSNKI---KSYTDGNT-VIPLS----SPGKRYFICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 78 ~s~~~---~~~s~G~~-~v~L~----~~G~~YFiC~~~~HC~~GmKl~I~V~ 121 (185)
..+.+ .....|.+ .|+++ ++|.|+|+|.+++|=+ |||..|+|.
T Consensus 116 d~~vl~~t~~l~pGet~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~ 166 (167)
T 3ay2_A 116 DARVVAHTKLIGGGEESSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLV 166 (167)
T ss_dssp CTTEEEECCCBCTTCEEEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred ccchhccceeeCCCCEEEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEe
Confidence 11111 12334543 55554 7999999999999987 999999996
No 29
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=98.50 E-value=1e-06 Score=67.74 Aligned_cols=90 Identities=16% Similarity=0.178 Sum_probs=58.1
Q ss_pred EEEEcCCCCCCCCCCCccccccCCeEecC-Ceeee--eecC-------CCcEEEEcCcCcc----------------ccc
Q 043413 24 NYTVGGPNGGWDTATDLRTWATSQKFLVG-DNLIF--QYPS-------SHDVTEVSKPDYD----------------SCQ 77 (185)
Q Consensus 24 ~~~VGg~~~GW~~~~~Y~~Was~~~f~vG-DtLvF--~y~~-------~H~Vv~Vs~~~Yd----------------~C~ 77 (185)
++.|+. ++++.|.. +..+++.| |++.| ++.. .|+++..+..+++ .=+
T Consensus 4 ~v~i~~-~d~m~F~p------~~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v~~~ 76 (129)
T 1cuo_A 4 ETTVTS-GDTMTYST------RSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPG 76 (129)
T ss_dssp EEEEEE-CSSSCCSC------SEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTT
T ss_pred EEEEEe-CCCceEcc------CeEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhccccccccccc
Confidence 566666 56788764 66899999 85554 4544 2999877543221 101
Q ss_pred CCCCc---cccCCCCc---EEecC---CCcceeEEcCCCCCCCCCCEEEEEec
Q 043413 78 TSNKI---KSYTDGNT---VIPLS---SPGKRYFICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 78 ~s~~~---~~~s~G~~---~v~L~---~~G~~YFiC~~~~HC~~GmKl~I~V~ 121 (185)
..+.+ .....|.+ +|++. ++|.|+|+|++++|=+ ||+..|+|.
T Consensus 77 ~~~~~~~t~~l~pGet~svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~ 128 (129)
T 1cuo_A 77 DKRVIAFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLE 128 (129)
T ss_dssp CTTCSEECCCBCTTCEEEEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred cccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCCchH-cCEEEEEEe
Confidence 11111 12334543 45544 8999999999999988 999999985
No 30
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=98.50 E-value=1.5e-07 Score=71.57 Aligned_cols=84 Identities=18% Similarity=0.203 Sum_probs=57.1
Q ss_pred EEEE---cCCCCCCCCCCCccccccCCeEecCCeeeeeecCC-CcEEEEcCcCcccccCCCCcc-ccCCC-CcEEecCCC
Q 043413 24 NYTV---GGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSS-HDVTEVSKPDYDSCQTSNKIK-SYTDG-NTVIPLSSP 97 (185)
Q Consensus 24 ~~~V---Gg~~~GW~~~~~Y~~Was~~~f~vGDtLvF~y~~~-H~Vv~Vs~~~Yd~C~~s~~~~-~~s~G-~~~v~L~~~ 97 (185)
++.+ |+ ++++.|.. ...++++||+|+|.+.+. |+|+..+. +-..+... ....| ...++++++
T Consensus 4 ~V~ml~~g~-~g~~~F~P------~~i~V~~GdtV~f~n~d~~H~v~~~~~-----~~p~~~~~~~~~~g~t~~~tF~~~ 71 (122)
T 2ux6_A 4 EVHMLNKGK-DGAMVFEP------ASLKVAPGDTVTFIPTDKGHNVETIKG-----MIPDGAEAFKSKINENYKVTFTAP 71 (122)
T ss_dssp EEEEEEEET-TEEEEEES------SEEEECTTEEEEEEESSSSCCCEECTT-----CSCTTCCCCBCCTTCCEEEEECSC
T ss_pred EEEEEecCC-CCCceEeC------CEEEECCCCEEEEEECCCCcEEEEccc-----ccCCCcceeecCCCCEEEEEeCCC
Confidence 3455 55 43455543 568999999999999877 99977531 11111100 11123 347889999
Q ss_pred cceeEEcCCCCCCCCCCEEEEEecCC
Q 043413 98 GKRYFICGAPGHCTVGMKVGIDTLAS 123 (185)
Q Consensus 98 G~~YFiC~~~~HC~~GmKl~I~V~~~ 123 (185)
|.|+|+|.. |+. |+..|.|...
T Consensus 72 G~y~y~C~~--H~~--M~G~I~V~~~ 93 (122)
T 2ux6_A 72 GVYGVKCTP--HPF--MVGVVQVGDA 93 (122)
T ss_dssp EEEEEEETT--EEE--EEEEEEESSS
T ss_pred EEEEEEeCC--Ccc--CEEEEEEeCC
Confidence 999999998 876 9999999753
No 31
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=98.31 E-value=4.4e-06 Score=64.15 Aligned_cols=90 Identities=22% Similarity=0.310 Sum_probs=55.8
Q ss_pred EEEEcCCCCCCCCCCCccccccCCeE-ecCCeeeeee--cC-------CCcEEEEcCcCcc----------------ccc
Q 043413 24 NYTVGGPNGGWDTATDLRTWATSQKF-LVGDNLIFQY--PS-------SHDVTEVSKPDYD----------------SCQ 77 (185)
Q Consensus 24 ~~~VGg~~~GW~~~~~Y~~Was~~~f-~vGDtLvF~y--~~-------~H~Vv~Vs~~~Yd----------------~C~ 77 (185)
++.|+. ++++.|.. +..++ +.||+|+|.| +. .||++..+..+.+ .=+
T Consensus 3 ~v~v~~-~d~m~F~p------~~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~ 75 (128)
T 2iaa_C 3 DVSIEG-NDSMQFNT------KSIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAG 75 (128)
T ss_dssp EEEEEE-CTTSCBSC------SEEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTT
T ss_pred EEEEEe-CCCceEec------CEEEEecCCcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccccc
Confidence 455666 56788764 45666 7799655554 43 2999877543221 111
Q ss_pred CCCC---ccccCCCCc-EEe--cC--CCcc-eeEEcCCCCCCCCCCEEEEEec
Q 043413 78 TSNK---IKSYTDGNT-VIP--LS--SPGK-RYFICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 78 ~s~~---~~~~s~G~~-~v~--L~--~~G~-~YFiC~~~~HC~~GmKl~I~V~ 121 (185)
-.+. ......|.+ .++ +. ++|. |.|+|++++|=+ |||..|+|.
T Consensus 76 ~~~~~~~t~~l~pGes~~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 127 (128)
T 2iaa_C 76 DERVIAHTSVIGGGETDSVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG 127 (128)
T ss_dssp CTTEEEECCCBCTTCEEEEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred cchhhccceeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence 1111 112345543 444 44 6785 999999999988 999999995
No 32
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=98.31 E-value=1.1e-06 Score=67.62 Aligned_cols=90 Identities=19% Similarity=0.276 Sum_probs=56.6
Q ss_pred EEEEcCCCCCCCCCCCccccccCCeE-ecCCeeeeee--cC-------CCcEEEEcCcCcccc----------------c
Q 043413 24 NYTVGGPNGGWDTATDLRTWATSQKF-LVGDNLIFQY--PS-------SHDVTEVSKPDYDSC----------------Q 77 (185)
Q Consensus 24 ~~~VGg~~~GW~~~~~Y~~Was~~~f-~vGDtLvF~y--~~-------~H~Vv~Vs~~~Yd~C----------------~ 77 (185)
++.|+. ++++.|.. +..++ +.||+|+|.| .. .|+++..+..+.+.- +
T Consensus 4 ~v~v~~-~d~m~F~p------~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~~~~ 76 (128)
T 1nwp_A 4 KVTVDS-TDQMSFNT------KDIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDG 76 (128)
T ss_dssp EEEEEE-CTTSCBSC------SEEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTT
T ss_pred EEEEEe-CCCccEec------CEEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhccccccccccc
Confidence 566776 56788864 56788 8899765555 43 299987654322110 1
Q ss_pred CCCCc---cccCCCCc-EE--ecC--CCcc-eeEEcCCCCCCCCCCEEEEEec
Q 043413 78 TSNKI---KSYTDGNT-VI--PLS--SPGK-RYFICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 78 ~s~~~---~~~s~G~~-~v--~L~--~~G~-~YFiC~~~~HC~~GmKl~I~V~ 121 (185)
..+.+ .....|.+ .+ +.. ++|. |.|+|++++|=+ |||..|+|.
T Consensus 77 ~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 128 (128)
T 1nwp_A 77 DARVIAHTKVIGAGEKDSVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK 128 (128)
T ss_dssp CTTEEEECCCBCTTCEEEEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred cchhheeeeeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence 01101 12345543 44 444 5776 999999999988 999999984
No 33
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=98.27 E-value=3.9e-06 Score=64.44 Aligned_cols=90 Identities=18% Similarity=0.252 Sum_probs=55.4
Q ss_pred EEEEcCCCCCCCCCCCccccccCCeE-ecCCeeee--eecC-------CCcEEEEcCcCcc----------------ccc
Q 043413 24 NYTVGGPNGGWDTATDLRTWATSQKF-LVGDNLIF--QYPS-------SHDVTEVSKPDYD----------------SCQ 77 (185)
Q Consensus 24 ~~~VGg~~~GW~~~~~Y~~Was~~~f-~vGDtLvF--~y~~-------~H~Vv~Vs~~~Yd----------------~C~ 77 (185)
++.|+. ++++.|.. +..++ +.||+|+| ++.. .|+++..+..+++ .=+
T Consensus 4 ~v~v~~-~d~m~F~p------~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (129)
T 2ccw_A 4 EATVES-NDAMQYNV------KEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAG 76 (129)
T ss_dssp EEEEEE-CTTSCBSC------SEEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTT
T ss_pred EEEEEe-CCCccEec------ceEEEecCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhcccccccccc
Confidence 566776 56788764 45566 67995554 4444 2999877543221 111
Q ss_pred CCCCc---cccCCCCc---EEecC--CCcc-eeEEcCCCCCCCCCCEEEEEec
Q 043413 78 TSNKI---KSYTDGNT---VIPLS--SPGK-RYFICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 78 ~s~~~---~~~s~G~~---~v~L~--~~G~-~YFiC~~~~HC~~GmKl~I~V~ 121 (185)
-.+.+ .....|.+ +|+.. ++|. |+|+|.+++|=+ |||..|+|.
T Consensus 77 ~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~ 128 (129)
T 2ccw_A 77 DTRVIAHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG 128 (129)
T ss_dssp CTTEEEECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred cccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence 11111 12344543 44454 5665 999999999977 999999995
No 34
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=97.75 E-value=4e-05 Score=55.99 Aligned_cols=66 Identities=11% Similarity=0.095 Sum_probs=44.7
Q ss_pred cCCeEecCCeeeeeecCC----CcEEEEcCcCcccccCCCCccccCCCCc---EEecCCCcceeEEcCCCCCCCC-CCEE
Q 043413 45 TSQKFLVGDNLIFQYPSS----HDVTEVSKPDYDSCQTSNKIKSYTDGNT---VIPLSSPGKRYFICGAPGHCTV-GMKV 116 (185)
Q Consensus 45 s~~~f~vGDtLvF~y~~~----H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~~---~v~L~~~G~~YFiC~~~~HC~~-GmKl 116 (185)
...+++.||+|+|.+.+. |++..-+. + . ......|.+ .|+.+++|.|+|.|.. ||.. +|+.
T Consensus 38 ~~i~v~~G~~V~~~~~n~d~~~H~~~i~~~-~-----~---~~~i~pG~~~~~~f~~~~~G~y~~~C~~--~~~~~~M~g 106 (112)
T 1iby_A 38 ETLVVKKGDAVKVVVENKSPISEGFSIDAF-G-----V---QEVIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPG 106 (112)
T ss_dssp CEEEEETTCEEEEEEEECSSSCEEEEEGGG-T-----E---EEEECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCE
T ss_pred CEEEEeCCCEEEEEEEECCCCeEEEEEcCC-C-----c---eeEeCCCCEEEEEEECCCCEEEEEECCC--CCchHHCEE
Confidence 457899999999876432 88754221 1 1 112334543 4445899999999999 8854 4999
Q ss_pred EEEec
Q 043413 117 GIDTL 121 (185)
Q Consensus 117 ~I~V~ 121 (185)
.|.|.
T Consensus 107 ~i~V~ 111 (112)
T 1iby_A 107 TLNVV 111 (112)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99985
No 35
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=97.68 E-value=8.3e-05 Score=57.31 Aligned_cols=67 Identities=18% Similarity=0.259 Sum_probs=47.3
Q ss_pred cCCeEecCCeeeeeecCC---CcEEEEcCcCcccccCCCCccccCCCC---cEEecCCCcceeEEcCCCCCCC---CCCE
Q 043413 45 TSQKFLVGDNLIFQYPSS---HDVTEVSKPDYDSCQTSNKIKSYTDGN---TVIPLSSPGKRYFICGAPGHCT---VGMK 115 (185)
Q Consensus 45 s~~~f~vGDtLvF~y~~~---H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~---~~v~L~~~G~~YFiC~~~~HC~---~GmK 115 (185)
+..++.+||+|+|..++. |++..-+.. . ......|. ..++++++|.|+|+|.. +|. .+|+
T Consensus 60 ~~l~Vp~G~~V~~~vts~DV~Hsf~ip~~~-~--------k~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~~H~~M~ 128 (135)
T 2cua_A 60 NPIEVPQGAEIVFKITSPDVIHGFHVEGTN-I--------NVEVLPGEVSTVRYTFKRPGEYRIICNQ--YCGLGHQNMF 128 (135)
T ss_dssp SSEEEETTSEEEEEEEBSSSCEEEEETTSS-C--------EEEECBTBCEEEEEECCSCEEEEEECCS--CCSTTSTTCE
T ss_pred CEEEEcCCCEEEEEEEeCCccceEEecCCC-c--------eeEeCCCCcEEEEEEcCCCEEEEEECcc--cCCCCcCCCE
Confidence 467999999999998654 887542111 1 01122342 37889999999999988 554 6899
Q ss_pred EEEEecC
Q 043413 116 VGIDTLA 122 (185)
Q Consensus 116 l~I~V~~ 122 (185)
+.|.|.+
T Consensus 129 g~v~V~~ 135 (135)
T 2cua_A 129 GTIVVKE 135 (135)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 9999863
No 36
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=97.53 E-value=2e-05 Score=64.07 Aligned_cols=78 Identities=22% Similarity=0.289 Sum_probs=51.3
Q ss_pred eEecCCeeeee---ecC-----C--CcEEEEcCcCcccccCCC-Cc--cccC--CCCcEEecC-------------CCc-
Q 043413 48 KFLVGDNLIFQ---YPS-----S--HDVTEVSKPDYDSCQTSN-KI--KSYT--DGNTVIPLS-------------SPG- 98 (185)
Q Consensus 48 ~f~vGDtLvF~---y~~-----~--H~Vv~Vs~~~Yd~C~~s~-~~--~~~s--~G~~~v~L~-------------~~G- 98 (185)
.+++||.|-|- |.. . +.|++|++++|+.|+... .. ...+ .+...|++. ++|
T Consensus 25 ~v~igD~LdIiCP~~~~~~~~~~E~~~LY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~ 104 (178)
T 1iko_P 25 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNK 104 (178)
T ss_dssp CCCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTE
T ss_pred EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence 45679999885 322 1 678999999999998863 21 1222 233333321 356
Q ss_pred ceeEEcCCC-----------CCCCC-CCEEEEEecCCCC
Q 043413 99 KRYFICGAP-----------GHCTV-GMKVGIDTLASTS 125 (185)
Q Consensus 99 ~~YFiC~~~-----------~HC~~-GmKl~I~V~~~~~ 125 (185)
.|||||+-. |+|.. +|||.|.|.....
T Consensus 105 ~YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~~~ 143 (178)
T 1iko_P 105 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDAS 143 (178)
T ss_dssp EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC--
T ss_pred ceEEEecCCcccccccccCCCccccceeEEEEEeecCCC
Confidence 699999864 68966 8999999966554
No 37
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=97.29 E-value=0.002 Score=49.47 Aligned_cols=87 Identities=18% Similarity=0.253 Sum_probs=51.0
Q ss_pred EEEEcCCCCCCCCCCCccccccCCeEec-CCeeeee--ecC-------CCcEEEEcCcCccc----------------cc
Q 043413 24 NYTVGGPNGGWDTATDLRTWATSQKFLV-GDNLIFQ--YPS-------SHDVTEVSKPDYDS----------------CQ 77 (185)
Q Consensus 24 ~~~VGg~~~GW~~~~~Y~~Was~~~f~v-GDtLvF~--y~~-------~H~Vv~Vs~~~Yd~----------------C~ 77 (185)
++.|.. +++..|.. +..++.. |++|.|. ++. +||++..+..+.+. =+
T Consensus 4 ~v~i~~-~d~M~F~p------~~i~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~~~~ 76 (125)
T 3fsa_A 4 SVDIQG-NDQMQFNT------NAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPD 76 (125)
T ss_dssp EEEEEB-CTTSCBSC------SEEEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCTT
T ss_pred EEEEEc-cCCcEEec------CEEEEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccCCCC
Confidence 445555 56788864 5566765 9987554 455 39998874322211 01
Q ss_pred CCCCc---cccCCCCc-EEe--cC---CCcceeEEcCCCCCCCCCCEEEEEec
Q 043413 78 TSNKI---KSYTDGNT-VIP--LS---SPGKRYFICGAPGHCTVGMKVGIDTL 121 (185)
Q Consensus 78 ~s~~~---~~~s~G~~-~v~--L~---~~G~~YFiC~~~~HC~~GmKl~I~V~ 121 (185)
-.+.+ .....|.+ .++ .. ++|.|-|+|+ +|= ||+..|+|.
T Consensus 77 d~~via~t~~l~pGes~~vtf~~~~l~~~G~y~f~C~--gH~--~M~G~v~V~ 125 (125)
T 3fsa_A 77 DSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCA--AHA--AMKGTLTLK 125 (125)
T ss_dssp CTTCCEECCCBCTTCEEEEEEEGGGC---CCEEEECS--SST--TCEEEEEEC
T ss_pred CccceeccceeCCCcEEEEEEeCcCcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence 11111 12345553 344 33 6799999999 886 999999884
No 38
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=96.96 E-value=0.0022 Score=51.35 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=46.7
Q ss_pred cCCeEecCCeeeeeecCC---CcEEEEcCcCcccccCCCCccccCCCC---cEEecCCCcceeEEcCCCCCCCC---CCE
Q 043413 45 TSQKFLVGDNLIFQYPSS---HDVTEVSKPDYDSCQTSNKIKSYTDGN---TVIPLSSPGKRYFICGAPGHCTV---GMK 115 (185)
Q Consensus 45 s~~~f~vGDtLvF~y~~~---H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~---~~v~L~~~G~~YFiC~~~~HC~~---GmK 115 (185)
....+.+|+.++|..++. |+...-+ +. .......|. ..++.+++|.|||+|+. .|.. +|+
T Consensus 93 n~l~VP~G~~Vr~~vTS~DViHsf~IP~---lg------ik~da~PG~~n~~~~~~~kpG~y~g~Cse--~CG~~Hs~M~ 161 (168)
T 3s8f_B 93 NPIEVPQGAEIVFKITSPDVIHGFHVEG---TN------INVEVLPGEVSTVRYTFKRPGEYRIICNQ--YCGLGHQNMF 161 (168)
T ss_dssp SSEEEETTSEEEEEEECSSSCEEEEETT---SS------CEEEECTTBCEEEEEECCSCEEEEEECCS--CCSTTGGGCE
T ss_pred CEEEEeCCCeEEEEEecCCceEEEEECC---CC------eEEEecCCceeEEEEEeCCCEEEEEECCc--CCCCCcCCCE
Confidence 557899999999988655 7775421 11 011122343 37889999999999997 6665 499
Q ss_pred EEEEecC
Q 043413 116 VGIDTLA 122 (185)
Q Consensus 116 l~I~V~~ 122 (185)
..|.|.+
T Consensus 162 g~V~V~e 168 (168)
T 3s8f_B 162 GTIVVKE 168 (168)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9999863
No 39
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*
Probab=96.79 E-value=0.0023 Score=52.11 Aligned_cols=75 Identities=15% Similarity=0.343 Sum_probs=46.6
Q ss_pred CeEecCCeeeee---ecC-------C--CcEEEEcCcCcccccCCC-Ccccc------C-CCCcEE--------------
Q 043413 47 QKFLVGDNLIFQ---YPS-------S--HDVTEVSKPDYDSCQTSN-KIKSY------T-DGNTVI-------------- 92 (185)
Q Consensus 47 ~~f~vGDtLvF~---y~~-------~--H~Vv~Vs~~~Yd~C~~s~-~~~~~------s-~G~~~v-------------- 92 (185)
..+++||.|-+- |.. . ..|++|++++|+.|+... ....+ . .|...|
T Consensus 50 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~e~y~sC~~~~~~~~~~~C~~P~~~~~p~kftikFQ~FSP~p~Gl 129 (182)
T 3czu_B 50 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGK 129 (182)
T ss_dssp EEECTTCEEEEECCCCC--CCCGGGSCCEEEEEECHHHHHHTCCCCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSC
T ss_pred EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhhhccCCCCCcEEEEeCCCCCCCCCcEEEEEEEEcCCCCCCe
Confidence 568899999774 432 1 457799999999998764 22111 1 232222
Q ss_pred ecCCCc-ceeEEcCC----CCCCCCCCEEEEEecCCCC
Q 043413 93 PLSSPG-KRYFICGA----PGHCTVGMKVGIDTLASTS 125 (185)
Q Consensus 93 ~L~~~G-~~YFiC~~----~~HC~~GmKl~I~V~~~~~ 125 (185)
.+ ++| .||||+.- +|.| |||.|.|.....
T Consensus 130 EF-~pG~dYY~ISts~~~~gg~C---mrL~v~V~~k~~ 163 (182)
T 3czu_B 130 EF-KEGHSYYYISKPIHQHEDRC---LRLKVTVSGKIT 163 (182)
T ss_dssp CC-CTTCEEEEEEEESSSCCCSC---CEEEEEECC---
T ss_pred eE-eCCCeEEEEEccCCCCCCcc---eEEEEEEecCCC
Confidence 23 356 58999863 3445 999999987665
No 40
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=96.69 E-value=0.0016 Score=57.72 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=52.0
Q ss_pred cCCeEecCCeeeeeecCC----CcEEEEcCcCcccccCCCCccccCCCCc---EEecCCCcceeEEcCCCCCCCCCCEEE
Q 043413 45 TSQKFLVGDNLIFQYPSS----HDVTEVSKPDYDSCQTSNKIKSYTDGNT---VIPLSSPGKRYFICGAPGHCTVGMKVG 117 (185)
Q Consensus 45 s~~~f~vGDtLvF~y~~~----H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~~---~v~L~~~G~~YFiC~~~~HC~~GmKl~ 117 (185)
...+++.||+|+|++.+. |++..-.......|-. ..|.+ .|+++++|+|||.|.+.+|-..||+..
T Consensus 55 p~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~~~~~~i-------~pG~~~~~~f~~~~~Gt~~y~~~~~~h~~~Gm~G~ 127 (447)
T 2dv6_A 55 PTLVVHEGETVQVNLVNGEGAQHDVVVDQYAARSAIVN-------GKNASSTFSFVASKVGEFNYYCSIAGHRQAGMEGN 127 (447)
T ss_dssp CCEEEETTCEEEEEEECSSSSCBCCEETTTTEECCCBC-------STTBEEEEEEECCSCEEEEEECCSTTHHHHTCEEE
T ss_pred CeEEEcCCCEEEEEEEcCCCCceEEEEccCCcccceec-------CCCCeEEEEEEcCCCEEEEEEeCCCChhhCCCEEE
Confidence 457899999999877543 7775422222223432 23332 566788999999999988877899999
Q ss_pred EEecCCCC
Q 043413 118 IDTLASTS 125 (185)
Q Consensus 118 I~V~~~~~ 125 (185)
|.|.....
T Consensus 128 i~V~~~~~ 135 (447)
T 2dv6_A 128 IQVLPGNR 135 (447)
T ss_dssp EEEESSCC
T ss_pred EEEeCCcc
Confidence 99987544
No 41
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}
Probab=96.43 E-value=0.0024 Score=51.81 Aligned_cols=78 Identities=19% Similarity=0.305 Sum_probs=49.0
Q ss_pred CeEecCCeeeee---ecC------C--CcEEEEcCcCcccccCCCCc-ccc--C-----CCCcEEe--------------
Q 043413 47 QKFLVGDNLIFQ---YPS------S--HDVTEVSKPDYDSCQTSNKI-KSY--T-----DGNTVIP-------------- 93 (185)
Q Consensus 47 ~~f~vGDtLvF~---y~~------~--H~Vv~Vs~~~Yd~C~~s~~~-~~~--s-----~G~~~v~-------------- 93 (185)
..+++||.|-+- |+. . ..++.|++++|+.|+..+.. ..+ + .|...|+
T Consensus 52 i~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~Vs~e~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~FSP~p~G~E 131 (177)
T 2x11_B 52 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE 131 (177)
T ss_dssp EEECTTCEEEEECCCCCSSSCSSSCCCEEEEEECHHHHHHTCCTTTEEEEEEECCTTCSSSSCEEEEECCSSCSSTTCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCcEEEEeCCCCCCCCCeEEEEEEEEcCCCCCCcc
Confidence 568899999774 432 1 46789999999999875422 111 1 1333222
Q ss_pred cCCCc-ceeEEcCCCCCCCCC--CEEEEEecCCCC
Q 043413 94 LSSPG-KRYFICGAPGHCTVG--MKVGIDTLASTS 125 (185)
Q Consensus 94 L~~~G-~~YFiC~~~~HC~~G--mKl~I~V~~~~~ 125 (185)
+ ++| .||||++-.++=..| |||.|.|.....
T Consensus 132 F-~pG~~YYyISTS~~~~~g~~ClrLkV~V~p~~~ 165 (177)
T 2x11_B 132 F-RPGREYFYISSAIPDNGRRSCLKLKVFVRPTNS 165 (177)
T ss_dssp C-CTTEEEEEEEEESSCCCSSSCCEEEEEECCTTT
T ss_pred c-cCCCeEEEEecCCCCCCCCcceEEEEEEEcCCC
Confidence 2 356 589997543221111 999999987765
No 42
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.30 E-value=0.006 Score=57.75 Aligned_cols=67 Identities=13% Similarity=0.199 Sum_probs=47.5
Q ss_pred cCCeEecCCeeeeeecC-----C--CcEEEEcCcCcccccCCCCccccCCCC---cEEecCCCcceeEEcCCCCCCCCC-
Q 043413 45 TSQKFLVGDNLIFQYPS-----S--HDVTEVSKPDYDSCQTSNKIKSYTDGN---TVIPLSSPGKRYFICGAPGHCTVG- 113 (185)
Q Consensus 45 s~~~f~vGDtLvF~y~~-----~--H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~---~~v~L~~~G~~YFiC~~~~HC~~G- 113 (185)
...++.+||+|+|..++ . |++..-+ +. .......|. ..|+.+++|.|||+|+. +|..+
T Consensus 558 ~eI~VP~GdtVrfiLTN~D~veDViHSF~IPs---lG------IK~DaiPGrtnsvtFtadkPGvY~y~CSE--~CGa~H 626 (638)
T 3sbq_A 558 QEFTVKQGDEVTVTITNIDQIEDVSHGFVVVN---HG------VSMEISPQQTSSITFVADKPGLHWYYCSW--FCHALH 626 (638)
T ss_dssp CEEEEETTCEEEEEEEECCCSTTCCEEEEETT---TT------EEEEECTTCEEEEEEECCSCEEEEEECCS--CCSTTC
T ss_pred CEEEEecCceeEEEEecCCcCCCceeeeEecC---CC------ceeeeCCCCeEEEEEEcCCCEEEEEECCC--cCCCCc
Confidence 56789999999998654 3 8875422 11 011223444 36788999999999998 67665
Q ss_pred --CEEEEEecC
Q 043413 114 --MKVGIDTLA 122 (185)
Q Consensus 114 --mKl~I~V~~ 122 (185)
|+..|.|.+
T Consensus 627 s~M~G~ViVEP 637 (638)
T 3sbq_A 627 MEMVGRMMVEP 637 (638)
T ss_dssp TTCEEEEEEEC
T ss_pred ccceEEEEEec
Confidence 999999974
No 43
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E
Probab=96.12 E-value=0.0034 Score=49.08 Aligned_cols=75 Identities=21% Similarity=0.276 Sum_probs=47.3
Q ss_pred eEecCCeeeee---ecC-----C--CcEEEEcCcCcccccCCC-Ccccc--C--CCCcEEecC-------------CCc-
Q 043413 48 KFLVGDNLIFQ---YPS-----S--HDVTEVSKPDYDSCQTSN-KIKSY--T--DGNTVIPLS-------------SPG- 98 (185)
Q Consensus 48 ~f~vGDtLvF~---y~~-----~--H~Vv~Vs~~~Yd~C~~s~-~~~~~--s--~G~~~v~L~-------------~~G- 98 (185)
.+++||.|-|- |.. . ..++.|++++|+.|+... ..... + .+...|++. ++|
T Consensus 24 ~v~i~D~ldIiCP~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g~ 103 (140)
T 2vsm_B 24 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNK 103 (140)
T ss_dssp CCCTTCEEEEEECCCC---CCCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTTE
T ss_pred EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence 45679999885 322 1 567889999999998763 22111 1 233322211 456
Q ss_pred ceeEEcCCC-----------CCCCC-CCEEEEEecC
Q 043413 99 KRYFICGAP-----------GHCTV-GMKVGIDTLA 122 (185)
Q Consensus 99 ~~YFiC~~~-----------~HC~~-GmKl~I~V~~ 122 (185)
.||||++-. |-|.. +|||.|.|..
T Consensus 104 ~YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~~ 139 (140)
T 2vsm_B 104 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGH 139 (140)
T ss_dssp EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred ceEEEecCCCCccccccccCCccccceEEEEEEecC
Confidence 589998743 36754 7999999963
No 44
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}
Probab=95.73 E-value=0.01 Score=46.49 Aligned_cols=74 Identities=19% Similarity=0.166 Sum_probs=48.1
Q ss_pred CeEecCCeeeee---ecC--------C--CcEEEEcCcCcccccCCC-Ccccc--C--CCCcE--------------Eec
Q 043413 47 QKFLVGDNLIFQ---YPS--------S--HDVTEVSKPDYDSCQTSN-KIKSY--T--DGNTV--------------IPL 94 (185)
Q Consensus 47 ~~f~vGDtLvF~---y~~--------~--H~Vv~Vs~~~Yd~C~~s~-~~~~~--s--~G~~~--------------v~L 94 (185)
..+++||.|-+- |.. . ..++.|++++|+.|+... +...+ + .+... +.+
T Consensus 22 i~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF 101 (141)
T 3d12_B 22 LYPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEF 101 (141)
T ss_dssp ECCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEECSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceee
Confidence 357889999774 433 1 567899999999998862 22211 1 22222 223
Q ss_pred CCCc-ceeEEcCCC-----------CCCCC-CCEEEEEec
Q 043413 95 SSPG-KRYFICGAP-----------GHCTV-GMKVGIDTL 121 (185)
Q Consensus 95 ~~~G-~~YFiC~~~-----------~HC~~-GmKl~I~V~ 121 (185)
++| .||||++-. |-|.. +|||.|.|.
T Consensus 102 -~pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~ 140 (141)
T 3d12_B 102 -RSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG 140 (141)
T ss_dssp -CTTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred -eCCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence 356 589998753 45754 799999985
No 45
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=95.35 E-value=0.024 Score=53.44 Aligned_cols=68 Identities=16% Similarity=0.153 Sum_probs=46.6
Q ss_pred cCCeEecCCeeeeeecC----C---CcEEEEcCcCcccccCCCCccccCCCCc---EEecCCCcceeEEcCC---CCCCC
Q 043413 45 TSQKFLVGDNLIFQYPS----S---HDVTEVSKPDYDSCQTSNKIKSYTDGNT---VIPLSSPGKRYFICGA---PGHCT 111 (185)
Q Consensus 45 s~~~f~vGDtLvF~y~~----~---H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~~---~v~L~~~G~~YFiC~~---~~HC~ 111 (185)
...++..||+|+|...+ . |++..-+ .+.+ .....|.+ .|+++++|.|||.|.. ..|
T Consensus 513 p~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip~-~gv~--------~~i~PG~t~t~~Fta~~pGtY~yhC~e~Cg~~H-- 581 (595)
T 1fwx_A 513 ESFTVKEGDEVTVIVTNLDEIDDLTHGFTMGN-YGVA--------MEIGPQMTSSVTFVAANPGVYWYYCQWFCHALH-- 581 (595)
T ss_dssp SEEEEETTCEEEEEEEECCCSTTCCEEEEETT-TTEE--------EEECTTCEEEEEEECCSCEEEEEECCSCCSTTC--
T ss_pred CEEEEECCCEEEEEEEeCCCCCCceeeEEecC-CCcc--------eeeCCCCeEEEEEECCCCEEEEEECCCCCCCCc--
Confidence 45689999999999754 1 7775422 1111 12234442 6788999999999994 245
Q ss_pred CCCEEEEEecCC
Q 043413 112 VGMKVGIDTLAS 123 (185)
Q Consensus 112 ~GmKl~I~V~~~ 123 (185)
.||+..|.|.+.
T Consensus 582 ~gM~G~IiV~p~ 593 (595)
T 1fwx_A 582 MEMRGRMLVEPK 593 (595)
T ss_dssp TTCEEEEEEECC
T ss_pred cCCEEEEEEEcC
Confidence 499999999764
No 46
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*
Probab=95.14 E-value=0.024 Score=44.13 Aligned_cols=78 Identities=18% Similarity=0.297 Sum_probs=47.7
Q ss_pred CeEecCCeeeee---ecC------C--CcEEEEcCcCcccccCCCCc-ccc--C-----CCCcEEe------------cC
Q 043413 47 QKFLVGDNLIFQ---YPS------S--HDVTEVSKPDYDSCQTSNKI-KSY--T-----DGNTVIP------------LS 95 (185)
Q Consensus 47 ~~f~vGDtLvF~---y~~------~--H~Vv~Vs~~~Yd~C~~s~~~-~~~--s-----~G~~~v~------------L~ 95 (185)
..+++||.|-+- |.. . ..++.|++++|+.|+..... ..+ + .|...|+ |.
T Consensus 23 i~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~E 102 (138)
T 1shx_A 23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE 102 (138)
T ss_dssp EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCcee
Confidence 468899999774 432 1 46789999999999875422 111 1 1333222 11
Q ss_pred -CCc-ceeEEcCCCCCCCCC--CEEEEEecCCC
Q 043413 96 -SPG-KRYFICGAPGHCTVG--MKVGIDTLAST 124 (185)
Q Consensus 96 -~~G-~~YFiC~~~~HC~~G--mKl~I~V~~~~ 124 (185)
++| .||||++-.+|=..| |||.|.|....
T Consensus 103 F~pG~~YY~ISts~~~~~g~~ClrL~V~V~p~~ 135 (138)
T 1shx_A 103 FRPGREYFYISSAIPDNGRRSCLKLKVFVRPTN 135 (138)
T ss_dssp CCTTEEEEEEEEESSCCSCSCCCEEEEEECCTT
T ss_pred ecCCCeEEEEEcCCCCCCCCceeEEEEEEEccc
Confidence 366 589997543221112 99999997654
No 47
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}
Probab=94.95 E-value=0.043 Score=43.65 Aligned_cols=78 Identities=17% Similarity=0.310 Sum_probs=46.1
Q ss_pred CeEecCCeeeee---ecCC---------CcEEEEcCcCcccccCCCCc-ccc--C-----CCCcEE--------------
Q 043413 47 QKFLVGDNLIFQ---YPSS---------HDVTEVSKPDYDSCQTSNKI-KSY--T-----DGNTVI-------------- 92 (185)
Q Consensus 47 ~~f~vGDtLvF~---y~~~---------H~Vv~Vs~~~Yd~C~~s~~~-~~~--s-----~G~~~v-------------- 92 (185)
..+++||.|-+- |..+ ..+++|++++|+.|+..... ..+ + .|...|
T Consensus 32 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~fSP~p~G~ 111 (157)
T 2wo3_B 32 VEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGF 111 (157)
T ss_dssp EEECTTCEEEEECCCCCSSCCCGGGSCCEEEEEECHHHHHHTCCTTSEEEEEEECCTTCTTSSCEEEEECCSSCSSTTSC
T ss_pred EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEECCCCCCCe
Confidence 468899999775 3211 34789999999999886521 111 1 133222
Q ss_pred ecCCCc-ceeEEcCCCCCCCCC--CEEEEEecCCCC
Q 043413 93 PLSSPG-KRYFICGAPGHCTVG--MKVGIDTLASTS 125 (185)
Q Consensus 93 ~L~~~G-~~YFiC~~~~HC~~G--mKl~I~V~~~~~ 125 (185)
.+ ++| .||||++-.++=..| |||.|.|.....
T Consensus 112 EF-~pG~~YY~ISTS~g~~~gg~C~rlkV~V~~~~~ 146 (157)
T 2wo3_B 112 EF-RPGHEYYYISATPPNAVDRPCLRLKVYVRPTQE 146 (157)
T ss_dssp CC-CTTCEEEEEEECTTCSCCTTCCEEEEEECCCC-
T ss_pred ee-eCCCeEEEEEecCCCCCCCcceeEEEEEEcCCC
Confidence 23 356 599999643321222 678787766544
No 48
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=92.16 E-value=0.34 Score=42.18 Aligned_cols=65 Identities=15% Similarity=0.056 Sum_probs=44.9
Q ss_pred CCeEecCCeeeeeecCC---CcEEEEcCcCcccccCCCCccccCCCC---cEEecCCCcceeEEcCCCCCCCCC---CEE
Q 043413 46 SQKFLVGDNLIFQYPSS---HDVTEVSKPDYDSCQTSNKIKSYTDGN---TVIPLSSPGKRYFICGAPGHCTVG---MKV 116 (185)
Q Consensus 46 ~~~f~vGDtLvF~y~~~---H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~---~~v~L~~~G~~YFiC~~~~HC~~G---mKl 116 (185)
...+.+|..|+|+-++. |+...-+.. .....-.|. ..++.+++|.||..|+. -|..| |++
T Consensus 152 ~l~lP~g~~V~~~lTS~DViHsf~IP~lg---------~k~DaiPGr~n~~~~~~~~~G~y~g~CsE--~CG~~Hs~M~~ 220 (315)
T 1fft_B 152 EIAFPANTPVYFKVTSNSVMNSFFIPRLG---------SQIYAMAGMQTRLHLIANEPGTYDGISAS--YSGPGFSGMKF 220 (315)
T ss_dssp BCCCCSSSEEEEEECBSSSCEEEEEGGGT---------EEEEECBTSCEEEEEECCSCBCCEEBCCS--CCSTTTTTCCE
T ss_pred eEEEeCCCEEEEEEEeCCccceeeecccC---------cEEeecCCcceeeEEecCCCeEEEEeccc--cchhhHHhccc
Confidence 45788999999999876 666432110 000111333 36789999999999997 77765 999
Q ss_pred EEEec
Q 043413 117 GIDTL 121 (185)
Q Consensus 117 ~I~V~ 121 (185)
.|.|.
T Consensus 221 ~v~vv 225 (315)
T 1fft_B 221 KAIAT 225 (315)
T ss_dssp ECCBC
T ss_pred eEEEe
Confidence 99887
No 49
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=90.68 E-value=0.55 Score=40.59 Aligned_cols=66 Identities=15% Similarity=0.262 Sum_probs=43.7
Q ss_pred CeEecCCeeeeeecCC---CcEEEEcCcCcccccCCCCccccCCCC---cEEecCCCcceeEEcCCCCCCCCC---CEEE
Q 043413 47 QKFLVGDNLIFQYPSS---HDVTEVSKPDYDSCQTSNKIKSYTDGN---TVIPLSSPGKRYFICGAPGHCTVG---MKVG 117 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~---H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~---~~v~L~~~G~~YFiC~~~~HC~~G---mKl~ 117 (185)
..+.+|+.|+|.-++. |+...-+.. .....-.|. ..++.+++|.||..|+. -|..| |++.
T Consensus 191 lvlP~g~~V~~~ltS~DViHsf~iP~lg---------~k~daiPG~~n~~~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~ 259 (298)
T 3hb3_B 191 VVVPVGKKVLVQVTATDVIHAWTIPAFA---------VKQDAVPGRIAQLWFSVDQEGVYFGQCSE--LCGINHAYMPIV 259 (298)
T ss_dssp EEEESSSEEEEEEEESSSCEEEEEGGGT---------EEEEECTTCCEEEEEECSSSEEEEECCCS--CCSTTTTSCCEE
T ss_pred EEEEcCCEEEEEEEeCCccceeeEcccC---------ceEEecCCceEEEEEEeCCCEEEEEEccc--ccCcCccCCeeE
Confidence 3567888888888754 665431110 001111343 36789999999999997 67665 9999
Q ss_pred EEecCC
Q 043413 118 IDTLAS 123 (185)
Q Consensus 118 I~V~~~ 123 (185)
|.|.+.
T Consensus 260 v~vvs~ 265 (298)
T 3hb3_B 260 VKAVSQ 265 (298)
T ss_dssp EEEECH
T ss_pred EEEEcH
Confidence 998765
No 50
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0
Probab=90.32 E-value=0.52 Score=36.31 Aligned_cols=74 Identities=14% Similarity=0.263 Sum_probs=44.4
Q ss_pred CeEecCCeeeee---ecC--------C-CcEEEEcCcCcccccCCC-Ccccc------C-CCCcEEe-------------
Q 043413 47 QKFLVGDNLIFQ---YPS--------S-HDVTEVSKPDYDSCQTSN-KIKSY------T-DGNTVIP------------- 93 (185)
Q Consensus 47 ~~f~vGDtLvF~---y~~--------~-H~Vv~Vs~~~Yd~C~~s~-~~~~~------s-~G~~~v~------------- 93 (185)
..+.+||.|-+- |+. . ..++.|++++|++|+... ....+ . .|...|+
T Consensus 22 v~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~~~~kft~kFQ~FSP~p~G~ 101 (132)
T 3hei_B 22 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGK 101 (132)
T ss_dssp EEECTTCEEEEECCCCCTTSSCGGGCCCEEEEEECHHHHHHTCCSCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSC
T ss_pred EEeCCCCeEEEECCCCCCCCCCCCCccEEEEEEeCHHHhccccCCCCCcEEEEeCCCCCCCCceEEEEEEEEcCCCCCCe
Confidence 467899999773 322 1 456789999999999765 22211 1 2333222
Q ss_pred -cCCCc-ceeEEcCCCCCCCCC-CEEEEEec
Q 043413 94 -LSSPG-KRYFICGAPGHCTVG-MKVGIDTL 121 (185)
Q Consensus 94 -L~~~G-~~YFiC~~~~HC~~G-mKl~I~V~ 121 (185)
+ ++| .||||++-..|=..+ +||.|.|.
T Consensus 102 EF-~pG~~YY~ISt~~~~~~~~cl~l~v~v~ 131 (132)
T 3hei_B 102 EF-KEGHSYYYISKPIHQHEDRCLRLKVTVK 131 (132)
T ss_dssp CC-CTTCEEEEEEEESSCCCCSCCEEEEEEC
T ss_pred ee-cCCCcEEEEEccCCCCCCcceEEEEEEE
Confidence 2 356 588898743322211 78888774
No 51
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=90.23 E-value=0.25 Score=40.71 Aligned_cols=65 Identities=20% Similarity=0.200 Sum_probs=44.4
Q ss_pred CCeEecCCeeeeeecCC---CcEEEEcCcCcccccCCCCccccCCCC---cEEecCCCcceeEEcCCCCCCCCC---CEE
Q 043413 46 SQKFLVGDNLIFQYPSS---HDVTEVSKPDYDSCQTSNKIKSYTDGN---TVIPLSSPGKRYFICGAPGHCTVG---MKV 116 (185)
Q Consensus 46 ~~~f~vGDtLvF~y~~~---H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~---~~v~L~~~G~~YFiC~~~~HC~~G---mKl 116 (185)
...+.+|+.|+|.-++. |+...-+. . .....-.|. ..++.+++|.||..|+. -|..| |++
T Consensus 42 ~l~lP~g~~V~~~lTS~DViHSF~IP~l---g------vK~daiPGr~n~l~~~~~~pG~y~g~CsE--~CG~~Hs~M~~ 110 (205)
T 1cyx_A 42 EIAFPANTPVYFKVTSNSVMHSFFIPRL---G------SQIYAMAGMQTRLHLIANEPGTYDGICAE--ICGPGHSGMKF 110 (205)
T ss_dssp EEEEETTSCEEEEEEESSSCEEEEEGGG---T------EEEEECTTCCEEEEECCSSSEEEEEEECS--CCSTTSTTCCE
T ss_pred eEEEeCCCEEEEEEecCCceeeEEeccc---C------cEEEecCCceEEEEEEeCCCeEEEEEccc--ccccchhhceE
Confidence 35688999999998765 66544211 1 001111333 36788999999999998 77765 999
Q ss_pred EEEec
Q 043413 117 GIDTL 121 (185)
Q Consensus 117 ~I~V~ 121 (185)
.|.|.
T Consensus 111 ~v~vv 115 (205)
T 1cyx_A 111 KAIAT 115 (205)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99987
No 52
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=89.77 E-value=0.33 Score=41.25 Aligned_cols=75 Identities=16% Similarity=0.199 Sum_probs=47.9
Q ss_pred CeEecCCeeeeeecCC------CcEEEEcCcCcccccCCCCccccCCCCc---EEecCCCcceeEEcCCCC-----CCCC
Q 043413 47 QKFLVGDNLIFQYPSS------HDVTEVSKPDYDSCQTSNKIKSYTDGNT---VIPLSSPGKRYFICGAPG-----HCTV 112 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~------H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~~---~v~L~~~G~~YFiC~~~~-----HC~~ 112 (185)
.+++.||+|++++.+. |.+..-...+.+.- ........|.+ .|+++++|++||-|-..+ |-..
T Consensus 66 i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~~~~~~~~~---~~~~~i~PG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~~ 142 (333)
T 1mzy_A 66 MIVHEGDYVELTLINPPENTMPHNIDFHAATGALGG---GGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVS 142 (333)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGG---GGGCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHHT
T ss_pred EEecCCCEEEEEEEECCCCcccccceecCCCCCCCC---CceeEeCCCCEEEEEEECCCCEEEEEeecCCcccchhhhhC
Confidence 5789999999977542 67654221111111 11112334543 677789999999998864 6667
Q ss_pred CCEEEEEecCCC
Q 043413 113 GMKVGIDTLAST 124 (185)
Q Consensus 113 GmKl~I~V~~~~ 124 (185)
||...+.|....
T Consensus 143 Gl~G~~iV~~~~ 154 (333)
T 1mzy_A 143 GMAGCIMVLPRD 154 (333)
T ss_dssp TCEEEEEEECTT
T ss_pred CCEEEEEEccCc
Confidence 999999997543
No 53
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=89.64 E-value=0.34 Score=41.16 Aligned_cols=75 Identities=17% Similarity=0.237 Sum_probs=47.1
Q ss_pred CeEecCCeeeeeecC-----C-CcEEEEcCcCcccccCCCCccccCCCCc---EEecCCCcceeEEcCCCC----CCCCC
Q 043413 47 QKFLVGDNLIFQYPS-----S-HDVTEVSKPDYDSCQTSNKIKSYTDGNT---VIPLSSPGKRYFICGAPG----HCTVG 113 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~-----~-H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~~---~v~L~~~G~~YFiC~~~~----HC~~G 113 (185)
.+++.||+|++++.+ . |++..-.....+. ...+.....|.+ .|+++++|++||-|...+ |-..|
T Consensus 67 i~v~~Gd~v~v~~~N~~~~~~~h~~~~h~~~~~~~---~~~~~~i~pG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~G 143 (336)
T 1oe1_A 67 LVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALG---GAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG 143 (336)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGG---GGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTT
T ss_pred EEEcCCCEEEEEEEcCCCCCccccceECCCCCCCC---CcceEEeCCCCEEEEEEECCCCeEEEEecCCCCchhHHHhCC
Confidence 578999999977644 2 7764421111000 011112334543 567789999999999843 44679
Q ss_pred CEEEEEecCCC
Q 043413 114 MKVGIDTLAST 124 (185)
Q Consensus 114 mKl~I~V~~~~ 124 (185)
|...|.|....
T Consensus 144 l~G~liV~~~~ 154 (336)
T 1oe1_A 144 MSGTLMVLPRD 154 (336)
T ss_dssp CEEEEEEECTT
T ss_pred CeEEEEEecCc
Confidence 99999997654
No 54
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=88.34 E-value=0.59 Score=39.47 Aligned_cols=65 Identities=14% Similarity=0.202 Sum_probs=44.9
Q ss_pred CeEecCCeeeeeecCC---CcEEEEcCcCcccccCCCCccccCCCC---cEEecCCCcceeEEcCCCCCCCCC---CEEE
Q 043413 47 QKFLVGDNLIFQYPSS---HDVTEVSKPDYDSCQTSNKIKSYTDGN---TVIPLSSPGKRYFICGAPGHCTVG---MKVG 117 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~---H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~---~~v~L~~~G~~YFiC~~~~HC~~G---mKl~ 117 (185)
..+.+|+.|+|.-++. |+...-+.. .....-.|. ..++.+++|.||..|+. -|..| |++.
T Consensus 173 l~lP~g~~v~~~~tS~DViHsf~ip~l~---------~k~da~PG~~n~~~~~~~~~G~y~g~Cse--~CG~~H~~M~~~ 241 (262)
T 2gsm_B 173 MVVPVNKTVVVQVTGADVIHSWTVPAFG---------VKQDAVPGRLAQLWFRAEREGIFFGQCSE--LCGISHAYMPIT 241 (262)
T ss_dssp EEEETTSEEEEEEEESSSCEEEEEGGGT---------EEEEECBTCCEEEEEECCSCEEEEECCCS--CCSTTGGGCCEE
T ss_pred EEEecCCEEEEEEEECcccceeeecccC---------ceEEecCCceeEEEEecCCcEEEEEEChH--hcccCcccCeEE
Confidence 4688999999998765 666432110 001111333 36889999999999998 88877 9999
Q ss_pred EEecC
Q 043413 118 IDTLA 122 (185)
Q Consensus 118 I~V~~ 122 (185)
|.|..
T Consensus 242 v~vv~ 246 (262)
T 2gsm_B 242 VKVVS 246 (262)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 98865
No 55
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=87.11 E-value=0.58 Score=39.90 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=44.8
Q ss_pred CCeEecCCeeeeeecCC------CcEEEEcCcCcccccCCCCccccCCCCc---EEecCCCcceeEEcCCC---CCCCCC
Q 043413 46 SQKFLVGDNLIFQYPSS------HDVTEVSKPDYDSCQTSNKIKSYTDGNT---VIPLSSPGKRYFICGAP---GHCTVG 113 (185)
Q Consensus 46 ~~~f~vGDtLvF~y~~~------H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~~---~v~L~~~G~~YFiC~~~---~HC~~G 113 (185)
..+++.||+|++++.+. |++..=-....|. .........|.+ .|+++++|+|||-|... .|-..|
T Consensus 71 ~i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~~~dG---~~~~~~i~PG~~~~y~f~~~~~Gt~wyH~h~~~~~~~~~~G 147 (327)
T 1kbv_A 71 MIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGG---GAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANG 147 (327)
T ss_dssp BEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGG---GTTTTCBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHHTT
T ss_pred eEEEeCCCEEEEEEEECCCCCCceeeEeCccccCCC---CCcceeecCCCEEEEEEECCCCeEEEEEeCCCChhhhhhcc
Confidence 36799999999976432 4443210011111 000111334443 56778999999999862 344679
Q ss_pred CEEEEEecCC
Q 043413 114 MKVGIDTLAS 123 (185)
Q Consensus 114 mKl~I~V~~~ 123 (185)
|...|.|...
T Consensus 148 l~G~~iV~~~ 157 (327)
T 1kbv_A 148 MYGLILVEPK 157 (327)
T ss_dssp CEEEEEEECT
T ss_pred eEEEEEEecC
Confidence 9999999764
No 56
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=86.74 E-value=0.97 Score=37.37 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=26.2
Q ss_pred EEecCCCcceeEEcCCCCCCCCC---CEEEEEecC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVG---MKVGIDTLA 122 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~G---mKl~I~V~~ 122 (185)
.++.+++|.||..|+. -|..| |.+.|.|..
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (227)
T 1v54_B 183 TLMSSRPGLYYGQCSE--ICGSNHSFMPIVLELVP 215 (227)
T ss_dssp EECCSSCEEEEECCCS--CCSTTGGGCCEEEEEEC
T ss_pred EEecCCcEEEEEEehh--hcccccccCeEEEEEEc
Confidence 6788999999999998 88887 999998865
No 57
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=84.50 E-value=0.74 Score=40.49 Aligned_cols=76 Identities=17% Similarity=0.171 Sum_probs=45.2
Q ss_pred CCeEecCCeeeeeecCC------CcEEEEcCcCcccccCCCCccccCCCCc---EEecCCCcceeEEcC---CCCCCCCC
Q 043413 46 SQKFLVGDNLIFQYPSS------HDVTEVSKPDYDSCQTSNKIKSYTDGNT---VIPLSSPGKRYFICG---APGHCTVG 113 (185)
Q Consensus 46 ~~~f~vGDtLvF~y~~~------H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~~---~v~L~~~G~~YFiC~---~~~HC~~G 113 (185)
..+++.||+|++++.+. |++..=-....|.- ........|.+ .|+++++|++||-|- ...|=..|
T Consensus 61 ~i~v~~Gd~v~v~~~N~l~~~~~~~iH~HG~~~~dG~---~~~~~i~pg~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~G 137 (442)
T 2zoo_A 61 FIRVREGDEIEFNLSNHPSSKMPHNIDLHAVTGPGGG---AESSFTAPGHTSTFNFKALNPGLYIYHCATAPVGMHIANG 137 (442)
T ss_dssp BEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGGG---GGGCCBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTT
T ss_pred cEEEeCCCEEEEEEEECCCCCCCCCEEecCCcCCCCC---CccEEECCCCEEEEEEEcCCCeEEEEecCCCChHHHHhCc
Confidence 36789999998866332 55543111111110 00111334443 577789999999994 33566689
Q ss_pred CEEEEEecCCC
Q 043413 114 MKVGIDTLAST 124 (185)
Q Consensus 114 mKl~I~V~~~~ 124 (185)
|...|.|....
T Consensus 138 l~G~~iv~~~~ 148 (442)
T 2zoo_A 138 MYGLILVEPKE 148 (442)
T ss_dssp CEEEEEEECTT
T ss_pred cEEEEEEeCCC
Confidence 99999997553
No 58
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=83.87 E-value=1.9 Score=35.92 Aligned_cols=79 Identities=14% Similarity=0.180 Sum_probs=47.3
Q ss_pred CCeEecCCeeeeeecCC----CcEEEEcCcCcccccCCCC--ccccCCCCc---EEecCCCcceeEEcCCC---CCCCCC
Q 043413 46 SQKFLVGDNLIFQYPSS----HDVTEVSKPDYDSCQTSNK--IKSYTDGNT---VIPLSSPGKRYFICGAP---GHCTVG 113 (185)
Q Consensus 46 ~~~f~vGDtLvF~y~~~----H~Vv~Vs~~~Yd~C~~s~~--~~~~s~G~~---~v~L~~~G~~YFiC~~~---~HC~~G 113 (185)
..+++.||+|++++.+. |++..=-.. +..-+-... ......|.+ .|+++.+|++||-|-.. .|=..|
T Consensus 67 ~i~~~~Gd~v~v~~~N~~~~~~~iH~HG~~-~~~~DG~p~~~~~~i~PG~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~G 145 (288)
T 3gdc_A 67 TLWAREGDALRIHFTNAGAHPHTIHFHGVH-RATMDGTPGIGAGSIAPGQSFTYEFDATPFGTHLYHCHQSPLAPHIAKG 145 (288)
T ss_dssp EEEEETTCEEEEEEEECSSSCBCCEESSCC-CGGGSCCTTSTTCSBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTT
T ss_pred cEEEeCCCEEEEEEEeCCCCcccEEecccc-ccccCCCCCccceeECCCCEEEEEEEcCCCccEEEEecCcchHHHHhCc
Confidence 36789999998887543 444331100 110110000 011223443 67788999999999885 355689
Q ss_pred CEEEEEecCCCC
Q 043413 114 MKVGIDTLASTS 125 (185)
Q Consensus 114 mKl~I~V~~~~~ 125 (185)
|...|.|.....
T Consensus 146 l~G~liV~~~~~ 157 (288)
T 3gdc_A 146 LYGGFIVEPKEG 157 (288)
T ss_dssp CEEEEEEECSSC
T ss_pred CeEEEEEeCCcc
Confidence 999999976544
No 59
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=82.84 E-value=1.2 Score=37.85 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=47.1
Q ss_pred CeEecCCeeeeeecC-----C-CcEEEEcCcCcccccCCCCccccCCCCc---EEecCCCcceeEEcCCCC----CCCCC
Q 043413 47 QKFLVGDNLIFQYPS-----S-HDVTEVSKPDYDSCQTSNKIKSYTDGNT---VIPLSSPGKRYFICGAPG----HCTVG 113 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~-----~-H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~~---~v~L~~~G~~YFiC~~~~----HC~~G 113 (185)
.+++.||+|++++.+ - |.+..-.....+. .........|.+ .|+++++|++||-|...+ |-..|
T Consensus 73 i~v~~Gd~v~v~~~N~~~~~~~hg~~~~~~~~~~~---~~~~~~i~PG~~~~y~~~~~~~Gt~wyH~h~~~~~~~~~~~G 149 (340)
T 2bw4_A 73 MVVHENDYVELRLINPDTNTLLHNIDFHAATGALG---GGALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSG 149 (340)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGG---GGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTT
T ss_pred EEEcCCCEEEEEEEeCCCCCccCcceeCCcCCCCC---CccceEeCCCCEEEEEEECCCCeEEEEEcCCCCchhhHHhCc
Confidence 578999999987754 2 6664321111000 011112334543 677889999999999853 45679
Q ss_pred CEEEEEecCCC
Q 043413 114 MKVGIDTLAST 124 (185)
Q Consensus 114 mKl~I~V~~~~ 124 (185)
|...+.|....
T Consensus 150 l~G~~iV~~~~ 160 (340)
T 2bw4_A 150 MNGAIMVLPRD 160 (340)
T ss_dssp CEEEEEEECTB
T ss_pred CEEEEEEccCc
Confidence 99999987644
No 60
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=82.05 E-value=3.7 Score=34.70 Aligned_cols=35 Identities=9% Similarity=0.046 Sum_probs=30.6
Q ss_pred EEecCCCcceeEEcCCCCCC-CCCCEEEEEecCCCC
Q 043413 91 VIPLSSPGKRYFICGAPGHC-TVGMKVGIDTLASTS 125 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC-~~GmKl~I~V~~~~~ 125 (185)
.|+.+++|.|+|.|-.-.|+ ..||...|.|.....
T Consensus 286 ~v~a~~pG~y~~~ch~~~h~~~~Gm~~~~~v~~~~~ 321 (333)
T 1mzy_A 286 LYKFLQPGVYAYVNHNLIEAVHKGATAHVLVEGEWD 321 (333)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTCCEEEEEEESCCC
T ss_pred EEEcCCCEEEEEecChhhhHhhCCCEEEEEEcCCCC
Confidence 67788999999999998898 999999999986544
No 61
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=78.94 E-value=1.8 Score=36.67 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=30.6
Q ss_pred EEecCCCcceeEEcCCCCCC-CCCCEEEEEecCCCC
Q 043413 91 VIPLSSPGKRYFICGAPGHC-TVGMKVGIDTLASTS 125 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC-~~GmKl~I~V~~~~~ 125 (185)
.|+.+++|.|+|.|....|+ ..||...|.|.....
T Consensus 286 lv~~~~pG~y~~~~h~~~~~~~~G~~~~~~V~~~~~ 321 (336)
T 1oe1_A 286 LYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKWN 321 (336)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCCC
T ss_pred EEEcCCCceEEEEechhhccccCCCeEEEEECCCCC
Confidence 67788899999999998888 899999999987655
No 62
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=73.79 E-value=6.3 Score=33.39 Aligned_cols=76 Identities=13% Similarity=0.210 Sum_probs=44.6
Q ss_pred CeEecCCeeeeeecCC----CcEEEEc--Cc---Ccccc-cCCCCccccCCCCc---EEecCCCcceeEEcCCCCC-C--
Q 043413 47 QKFLVGDNLIFQYPSS----HDVTEVS--KP---DYDSC-QTSNKIKSYTDGNT---VIPLSSPGKRYFICGAPGH-C-- 110 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~----H~Vv~Vs--~~---~Yd~C-~~s~~~~~~s~G~~---~v~L~~~G~~YFiC~~~~H-C-- 110 (185)
++++.||+|++++.+. |++..-- .. ..|.= ..+ ......|.+ .|+++++|++||-|..... .
T Consensus 36 i~~~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~p~~t--~~~i~PG~~~~y~f~~~~~Gt~wYH~H~~~~~~~~ 113 (318)
T 3g5w_A 36 IHVMEGDDVTVNVTNMTTLPHTIHWHGMLQRGTWQSDGVPHAT--QHAIEPGDTFTYKFKAEPAGTMWYHCHVNVNEHVT 113 (318)
T ss_dssp EEEETTCEEEEEEEECSSSCBCCEEETCCCTTCGGGSCCBTTT--BCCBCTTCEEEEEEECCSCEEEEEECCSSHHHHHH
T ss_pred EEEeCCCEEEEEEEeCCCCceeEEecCcCCCCCcccCCCcccc--cccCCCCCEEEEEEEcCCCEEEEEEccCChhhhhc
Confidence 6799999999888643 4543321 00 11110 000 011224443 6778899999999987421 1
Q ss_pred CCCCEEEEEecCCC
Q 043413 111 TVGMKVGIDTLAST 124 (185)
Q Consensus 111 ~~GmKl~I~V~~~~ 124 (185)
..||...|.|....
T Consensus 114 ~~Gl~G~lIV~~~~ 127 (318)
T 3g5w_A 114 MRGMWGPLIVEPKN 127 (318)
T ss_dssp HSCCEEEEEEECSS
T ss_pred cCCCEEEEEEcCCC
Confidence 26999999887543
No 63
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=73.50 E-value=3.5 Score=34.09 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=29.9
Q ss_pred EEecC---CCcceeEEcCCCCCCCCCCEEEEEecCCCC
Q 043413 91 VIPLS---SPGKRYFICGAPGHCTVGMKVGIDTLASTS 125 (185)
Q Consensus 91 ~v~L~---~~G~~YFiC~~~~HC~~GmKl~I~V~~~~~ 125 (185)
.+..+ .+|.++|-|-+..|=..||...+.|.....
T Consensus 231 ~~~~~~~~npG~w~~HCH~~~H~~~GM~g~~~V~~~~~ 268 (276)
T 3kw8_A 231 QIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDG 268 (276)
T ss_dssp EEETTTTTCSEEEEEEECSHHHHHTTCEEEEEEECTTS
T ss_pred EEEeccCCCCCeEEEECCCchHhhCCCeEEEEEeCCCC
Confidence 44555 589999999999999999999999988765
No 64
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=73.37 E-value=2.1 Score=36.79 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=27.8
Q ss_pred CCCcceeEEcCCCCCCCCCCEEEEEecCCCC
Q 043413 95 SSPGKRYFICGAPGHCTVGMKVGIDTLASTS 125 (185)
Q Consensus 95 ~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~~ 125 (185)
+.+|.++|-|-+..|=..||...+.|.....
T Consensus 279 ~~pG~w~~HCHi~~H~~~GM~g~~~V~~~~~ 309 (343)
T 3cg8_A 279 VGAGAWMYHCHVQSHSDMGMVGLFLVKKPDG 309 (343)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTTS
T ss_pred CCCeeEEEeCCCHHHHhccCcEEEEEecCCC
Confidence 5799999999999999999999999987655
No 65
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=72.13 E-value=6.2 Score=35.70 Aligned_cols=34 Identities=6% Similarity=0.130 Sum_probs=28.5
Q ss_pred EEec-CCCcceeEEcCCCCCCCCCCEEEEEecCCC
Q 043413 91 VIPL-SSPGKRYFICGAPGHCTVGMKVGIDTLAST 124 (185)
Q Consensus 91 ~v~L-~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~ 124 (185)
.|++ ++.|+|||-|-...|-..||-..+.|....
T Consensus 117 ~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~ 151 (521)
T 1v10_A 117 DFVVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDPN 151 (521)
T ss_dssp EEECTTCCEEEEEEECSTTGGGGTCEEEEEEECTT
T ss_pred EEecCCCCccEEEEeccCCchhcCceEEEEEcCCc
Confidence 5664 579999999999888888999999997654
No 66
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=71.12 E-value=3.6 Score=35.94 Aligned_cols=74 Identities=19% Similarity=0.242 Sum_probs=41.5
Q ss_pred CeEecCCeeeeeecCC------CcEEEEcCcCcccccCCCCccccCCCCc---EEecCCCcceeEEcCCC---CCCCCCC
Q 043413 47 QKFLVGDNLIFQYPSS------HDVTEVSKPDYDSCQTSNKIKSYTDGNT---VIPLSSPGKRYFICGAP---GHCTVGM 114 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~------H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~~---~v~L~~~G~~YFiC~~~---~HC~~Gm 114 (185)
.+++.||+++|++.+. |++..=.....|.- ........|.. .|+++.+|+|||-|... .|=..||
T Consensus 197 i~v~~G~~v~~rl~N~~~~~~~~~ih~Hg~~~~DG~---~~~~~i~pG~~~~~~~~~~~~G~~~yh~h~~~~~~~~~~Gl 273 (447)
T 2dv6_A 197 LRVRVGDTVELHLKNHKDSLMVHSVDFHGATGPGGA---AAFTQTDPGEETVVTFKALIPGIYVYHCATPSVPTHITNGM 273 (447)
T ss_dssp EEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGGG---GGGCCBCTTCEEEEEEECCSCEEEEEECCSSSHHHHHHTTC
T ss_pred EEecCCCEEEEEEEeCCCCceeEEEeeccccCCCCC---CccEEeCCCCEEEEEEECCCCeEEEEEeCCCChHHHHhCCC
Confidence 5677899988876432 33321000001110 00111334543 56678899999999762 2335799
Q ss_pred EEEEEecCC
Q 043413 115 KVGIDTLAS 123 (185)
Q Consensus 115 Kl~I~V~~~ 123 (185)
...|.|...
T Consensus 274 ~g~l~v~~~ 282 (447)
T 2dv6_A 274 YGLLLVEPE 282 (447)
T ss_dssp EEEEEEECT
T ss_pred EEEEEEeCC
Confidence 999988654
No 67
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} PDB: 3qjo_A
Probab=69.33 E-value=3.8 Score=37.76 Aligned_cols=73 Identities=10% Similarity=0.220 Sum_probs=48.2
Q ss_pred CeEecCCeeeeeecCC---CcEEEE-cCcCcccccCCCCc-cccCCCCcEEecCCCcceeEEcCCCCCCCCCC-EEEEEe
Q 043413 47 QKFLVGDNLIFQYPSS---HDVTEV-SKPDYDSCQTSNKI-KSYTDGNTVIPLSSPGKRYFICGAPGHCTVGM-KVGIDT 120 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~---H~Vv~V-s~~~Yd~C~~s~~~-~~~s~G~~~v~L~~~G~~YFiC~~~~HC~~Gm-Kl~I~V 120 (185)
.-++.|-.|.|.=-.. .-++.+ +......|...-.. ..|.-| .++.|+ +|.|||..+...-|+.|- ++.|.|
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (491)
T 3l6w_A 413 VVVKRGTKIMFMSVDEAVTTPMLNLGSYTAMFKCKVPPFSFHAFELG-KMYSVE-SGDYFMTASTTELCNDNNLRIHVHV 490 (491)
T ss_pred eEeecCCEEEEEecccchhhHHHhhhhhhhhhccccCCCccCccccc-ceEecC-CCceEecCChHHHHhCCceeEEEEe
Confidence 4577888888854332 233333 55666778865422 112222 355665 899999999999999997 999988
Q ss_pred c
Q 043413 121 L 121 (185)
Q Consensus 121 ~ 121 (185)
.
T Consensus 491 ~ 491 (491)
T 3l6w_A 491 D 491 (491)
T ss_pred C
Confidence 4
No 68
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=69.29 E-value=1.1 Score=31.99 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=16.3
Q ss_pred ccCCeEecCCeeeeeecCC
Q 043413 44 ATSQKFLVGDNLIFQYPSS 62 (185)
Q Consensus 44 as~~~f~vGDtLvF~y~~~ 62 (185)
+..+.++.||.|+|+|...
T Consensus 73 v~~~~L~~GD~lvF~~~~~ 91 (104)
T 1yel_A 73 VKDNNLEDGKYLQFIYDRD 91 (104)
T ss_dssp HHHHTCCTTCEEEEEECSS
T ss_pred HHHcCCCCCCEEEEEEcCC
Confidence 4567899999999999876
No 69
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=68.80 E-value=3.3 Score=41.04 Aligned_cols=76 Identities=17% Similarity=0.137 Sum_probs=52.0
Q ss_pred CCeEecCCeeeeeecCC------CcEEEEc------CcCcccccCCCCccccCCCCcEEecCCCcceeEEcCCCCCCCCC
Q 043413 46 SQKFLVGDNLIFQYPSS------HDVTEVS------KPDYDSCQTSNKIKSYTDGNTVIPLSSPGKRYFICGAPGHCTVG 113 (185)
Q Consensus 46 ~~~f~vGDtLvF~y~~~------H~Vv~Vs------~~~Yd~C~~s~~~~~~s~G~~~v~L~~~G~~YFiC~~~~HC~~G 113 (185)
...+..||+|+.+..+. |+|.+-. ...++.|.+.-. ..-...|+.+..|++|+-|-+..|=..|
T Consensus 633 ~l~~~~gd~v~~~v~~~g~~~~~Hgl~~~g~t~~~dG~~~~t~~i~pg----~~~t~~~~~~~~Gt~~~h~h~~~~~~~G 708 (1065)
T 2j5w_A 633 GLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGERRDTANLFPQ----TSLTLHMWPDTEGTFNVECLTTDHYTGG 708 (1065)
T ss_dssp CCEEETTCCEEEEEECCCSTTCCEEEEETTCCEEETTEEESEEEECTT----CEEEEEECCCSCEEEEEEECSHHHHHTT
T ss_pred ceEEeCCCEEEEEEEcCCCcceEEeeEEeCCceeecCeecceEeecCC----ceEEEEEecCCCeEEEEecCCCcccCCC
Confidence 47899999998876531 6665431 222444553311 1111256777899999999999988999
Q ss_pred CEEEEEecCCCC
Q 043413 114 MKVGIDTLASTS 125 (185)
Q Consensus 114 mKl~I~V~~~~~ 125 (185)
|+..+.|.....
T Consensus 709 m~g~~~V~~~~~ 720 (1065)
T 2j5w_A 709 MKQKYTVNQCRR 720 (1065)
T ss_dssp CEEEEEEECCSC
T ss_pred cEEEEEEcCCcc
Confidence 999999977644
No 70
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=68.65 E-value=4.3 Score=34.59 Aligned_cols=76 Identities=14% Similarity=0.208 Sum_probs=44.3
Q ss_pred CCeEecCCeeeeeecCC----CcEE-----EEcCcCcccc-cCCCCccccCCCCc---EEecCCCcceeEEcCCCC--CC
Q 043413 46 SQKFLVGDNLIFQYPSS----HDVT-----EVSKPDYDSC-QTSNKIKSYTDGNT---VIPLSSPGKRYFICGAPG--HC 110 (185)
Q Consensus 46 ~~~f~vGDtLvF~y~~~----H~Vv-----~Vs~~~Yd~C-~~s~~~~~~s~G~~---~v~L~~~G~~YFiC~~~~--HC 110 (185)
.++++.||+|++++.+. ++|. +......|.= ..+. .....|.+ .|+++++|+|||-|.... |-
T Consensus 36 ~I~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGvp~vtq--~~I~PG~~~~y~f~~~~~Gt~wyH~H~~~~~q~ 113 (339)
T 2zwn_A 36 LIHVQEGDDVIVNVTNNTSLPHTIHWHGVHQKGTWRSDGVPGVTQ--QPIEAGDSYTYKFKADRIGTLWYHCHVNVNEHV 113 (339)
T ss_dssp EEEEETTCEEEEEEEEESSSCBCCEEETCCCTTCGGGSCCBTTTB--CCBCTTCEEEEEEECCSCEEEEEECCSSHHHHT
T ss_pred eEEEECCCEEEEEEEECCCCCccEEeCCCCcCCCcccCCCCcccc--CccCCCCeEEEEEECCCCEEEEEEecCCchhhh
Confidence 36789999999987543 3332 1111001110 0000 01223443 677888999999998753 44
Q ss_pred C-CCCEEEEEecCC
Q 043413 111 T-VGMKVGIDTLAS 123 (185)
Q Consensus 111 ~-~GmKl~I~V~~~ 123 (185)
. .||...+.|...
T Consensus 114 ~~~Gl~G~liV~p~ 127 (339)
T 2zwn_A 114 GVRGMWGPLIVDPK 127 (339)
T ss_dssp TTSCCEEEEEEECS
T ss_pred hcCCceEeEEecCC
Confidence 4 799988888654
No 71
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=68.54 E-value=4.4 Score=34.33 Aligned_cols=35 Identities=9% Similarity=0.063 Sum_probs=29.3
Q ss_pred EEecCCCcceeEEcCCCCCC-CCCCEEEEEecCCCC
Q 043413 91 VIPLSSPGKRYFICGAPGHC-TVGMKVGIDTLASTS 125 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC-~~GmKl~I~V~~~~~ 125 (185)
.|+.+.+|.|+|.|-...|| ..||...|.|.....
T Consensus 275 ~v~~~~pG~y~l~~h~~~~~~~~g~~a~l~~~g~~~ 310 (327)
T 1kbv_A 275 EFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAEN 310 (327)
T ss_dssp EEEECSCEEEEEEESSTHHHHHSSCEEEEEEESCCC
T ss_pred EEEeCCCeEEEEEeccccccccCCcEEEEEECCCCC
Confidence 56778899999999998998 789998888876543
No 72
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=66.31 E-value=3 Score=37.13 Aligned_cols=72 Identities=13% Similarity=0.142 Sum_probs=46.3
Q ss_pred CeEecCCeeeeeecCC----CcEEE----E-c-CcCcccccCCCCccccCCCCc---EEecCC-CcceeEEcCC----CC
Q 043413 47 QKFLVGDNLIFQYPSS----HDVTE----V-S-KPDYDSCQTSNKIKSYTDGNT---VIPLSS-PGKRYFICGA----PG 108 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~----H~Vv~----V-s-~~~Yd~C~~s~~~~~~s~G~~---~v~L~~-~G~~YFiC~~----~~ 108 (185)
+.++.||+|++++.+. ++|.. + . .++.-.|-+ ..|.+ .|+++. .|+|||-|-. ..
T Consensus 52 i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~~~DG~~~~~i-------~PG~~~~Y~f~~~~~~GT~wYH~H~~~~t~~ 124 (451)
T 2uxt_A 52 IRVWKGDDVKLIYSNRLTENVSMTVAGLQVPGPLMGGPARMM-------SPNADWAPVLPIRQNAATLWYHANTPNRTAQ 124 (451)
T ss_dssp EEEETTCEEEEEEEECSSSCBCEEEETCCCCGGGSCSGGGCB-------CTTCEECCEEECCSCSEEEEEEECCTTTHHH
T ss_pred EEEeCCCEEEEEEEECCCCCccEEECCccCCCCCCCCCcCcC-------CCCCeEEEEEEcCCCCcceEEecCCCCchhh
Confidence 5689999999988654 34422 1 1 111112322 23433 678886 9999999988 33
Q ss_pred CCCCCCEEEEEecCCCC
Q 043413 109 HCTVGMKVGIDTLASTS 125 (185)
Q Consensus 109 HC~~GmKl~I~V~~~~~ 125 (185)
|-..||-..+.|.....
T Consensus 125 q~~~Gl~G~liV~~~~~ 141 (451)
T 2uxt_A 125 QVYNGLAGMWLVEDEVS 141 (451)
T ss_dssp HHHTTCEEEEEEECHHH
T ss_pred hHhhcceEEEEEecCcc
Confidence 45589999999987543
No 73
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=64.94 E-value=24 Score=32.01 Aligned_cols=78 Identities=12% Similarity=0.118 Sum_probs=48.6
Q ss_pred CCeEecCCeeeeeecCC-----CcEEEE----cCc-Ccccc-cCCCCccccCCCCc---EEecCCCcceeEEcCCCCCCC
Q 043413 46 SQKFLVGDNLIFQYPSS-----HDVTEV----SKP-DYDSC-QTSNKIKSYTDGNT---VIPLSSPGKRYFICGAPGHCT 111 (185)
Q Consensus 46 ~~~f~vGDtLvF~y~~~-----H~Vv~V----s~~-~Yd~C-~~s~~~~~~s~G~~---~v~L~~~G~~YFiC~~~~HC~ 111 (185)
.++++.||+|+.++.+. ++|..= ... ..|.= ..+. .....|.+ .|++++.|+|||-|-...+-.
T Consensus 35 ~I~~~~GD~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~~vtq--~~I~PG~s~tY~f~~~~~GT~wYHsH~~~q~~ 112 (552)
T 1aoz_A 35 TIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQ--CAINPGETFFYNFTVDNPGTFFYHGHLGMQRS 112 (552)
T ss_dssp CEEEETTCEEEEEEEECCSSCCBCEEEETCCCTTCGGGSCCBTTTB--CCBCTTCEEEEEEECCSCEEEEEEECSTTTGG
T ss_pred cEEEeCCCEEEEEEEeCCCCCCeeEEeCCCccCCCcccCCCccccc--CCcCCCCeEEEEEECCCCEEEEEEECchhHHh
Confidence 36799999999887543 333211 000 01110 0000 01224443 677889999999999988878
Q ss_pred CCCEEEEEecCCCC
Q 043413 112 VGMKVGIDTLASTS 125 (185)
Q Consensus 112 ~GmKl~I~V~~~~~ 125 (185)
.||...|.|.....
T Consensus 113 ~Gl~G~liV~~~~~ 126 (552)
T 1aoz_A 113 AGLYGSLIVDPPQG 126 (552)
T ss_dssp GTCEEEEEEECCTT
T ss_pred ccCeeeEEEeCCcc
Confidence 89999999987643
No 74
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=68.58 E-value=1.3 Score=38.23 Aligned_cols=67 Identities=16% Similarity=0.224 Sum_probs=43.7
Q ss_pred CeEecCCeeeeeecCC---CcEEEEcCcCcccccCCCCccccCCCC---cEEecCCCcceeEEcCCCCCCCCC---CEEE
Q 043413 47 QKFLVGDNLIFQYPSS---HDVTEVSKPDYDSCQTSNKIKSYTDGN---TVIPLSSPGKRYFICGAPGHCTVG---MKVG 117 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~---H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~---~~v~L~~~G~~YFiC~~~~HC~~G---mKl~ 117 (185)
..+.+|..|.|+-++. |+...-+.. . ....-.|. ..++.+++|.||..|+. -|..| |.+.
T Consensus 143 l~~P~~~~v~~~~ts~DViHsf~vp~~~--------~-k~d~~PG~~~~~~~~~~~~G~y~g~c~e--~cG~~Hs~M~~~ 211 (337)
T 2yev_B 143 LVLPAGVPVELEITSKDVIHSFWVPGLA--------G-KRDAIPGQTTRISFEPKEPGLYYGFCAE--LCGASHARMLFR 211 (337)
Confidence 5688899999998765 655331110 0 00111232 36788999999999998 77766 8888
Q ss_pred EEecCCC
Q 043413 118 IDTLAST 124 (185)
Q Consensus 118 I~V~~~~ 124 (185)
|.+....
T Consensus 212 v~~vs~~ 218 (337)
T 2yev_B 212 VVVLPKE 218 (337)
Confidence 8776553
No 75
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=63.94 E-value=7.7 Score=33.91 Aligned_cols=35 Identities=9% Similarity=0.058 Sum_probs=29.2
Q ss_pred EEecCCCcceeEEcCCCCCC-CCCCEEEEEecCCCC
Q 043413 91 VIPLSSPGKRYFICGAPGHC-TVGMKVGIDTLASTS 125 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC-~~GmKl~I~V~~~~~ 125 (185)
.|+++++|.|+|.|....|+ ..||...+.|.....
T Consensus 265 ~v~~~~~G~y~~~~~~~~~~~~~g~~a~l~v~~~~~ 300 (442)
T 2zoo_A 265 EFKVEVPGTFILVDHSIFRAFNKGALAMLKVEGPDD 300 (442)
T ss_dssp EEECCSCEEEEEEESSTHHHHTTSCEEEEEEESCCC
T ss_pred EEEcCCCCeEEEEecccccccccCceEEEEecCCCC
Confidence 57788899999999998887 789988888876654
No 76
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=63.58 E-value=10 Score=34.49 Aligned_cols=78 Identities=12% Similarity=0.086 Sum_probs=47.8
Q ss_pred CeEecCCeeeeeecCC-C----cEEEEcCcCcccccCCCCc----cccCCCCc---EEecC-CCcceeEEcCCCCCCCCC
Q 043413 47 QKFLVGDNLIFQYPSS-H----DVTEVSKPDYDSCQTSNKI----KSYTDGNT---VIPLS-SPGKRYFICGAPGHCTVG 113 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~-H----~Vv~Vs~~~Yd~C~~s~~~----~~~s~G~~---~v~L~-~~G~~YFiC~~~~HC~~G 113 (185)
++++.||+|+.++.+. . +|..=-..--......+.- .....|.+ .|+++ ..|+|||-|-...|-..|
T Consensus 36 i~~~~Gd~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG~~~vtq~pI~PG~~~~Y~f~~~~~~GT~wYH~H~~~q~~~G 115 (534)
T 1zpu_A 36 ITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQCPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQYEDG 115 (534)
T ss_dssp EEEETTCEEEEEEECCCSSCCBCCEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECSSCCEEEEEECCSSSGGGGT
T ss_pred EEEECCCEEEEEEEeCCCCCCeeEEcCCcccCCCCcccCCCccccCCcCCCCeEEEEEEeCccceeEEEEEcCcccccCc
Confidence 6799999999988654 2 2221100000001111100 01223443 67777 899999999998888889
Q ss_pred CEEEEEecCCC
Q 043413 114 MKVGIDTLAST 124 (185)
Q Consensus 114 mKl~I~V~~~~ 124 (185)
|...+.|....
T Consensus 116 l~G~liV~~~~ 126 (534)
T 1zpu_A 116 MKGLFIIKDDS 126 (534)
T ss_dssp CEEEEEEECTT
T ss_pred ceeeEEeCCCC
Confidence 99999998764
No 77
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=62.93 E-value=2.7 Score=34.99 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=28.6
Q ss_pred EEecCCCcceeEEcCCCCCCCCCCEEEEEecC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVGMKVGIDTLA 122 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~GmKl~I~V~~ 122 (185)
.|..+.+|.|.|.|-+..|=..||...|.|.+
T Consensus 257 ~~~~~~pG~~~~hCH~~~H~~~GM~~~~~V~~ 288 (288)
T 3gdc_A 257 ELRFPYPGKFMFHAHKTEFAELGWMGFFEVSA 288 (288)
T ss_dssp EECCCSCEEEEEECSSHHHHTTTCEEEEEEEC
T ss_pred EEECCCCEEEEEEecChHHHhcCCCEEEEEeC
Confidence 56678999999999999999999999999864
No 78
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=62.86 E-value=19 Score=32.80 Aligned_cols=78 Identities=9% Similarity=0.003 Sum_probs=47.3
Q ss_pred CeEecCCeeeeeecCC-----CcEEEEcCcCcccccCCCCc----cccCC-CCc---EEecCCCcceeEEcCCCCCCCCC
Q 043413 47 QKFLVGDNLIFQYPSS-----HDVTEVSKPDYDSCQTSNKI----KSYTD-GNT---VIPLSSPGKRYFICGAPGHCTVG 113 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~-----H~Vv~Vs~~~Yd~C~~s~~~----~~~s~-G~~---~v~L~~~G~~YFiC~~~~HC~~G 113 (185)
++++.||+|+.++.+. ++|..=-..-.......+.- ..... |.+ .|+++++|+|||-|-...|=..|
T Consensus 69 i~~~~GD~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG~~~~tq~~I~P~G~~~~Y~f~~~q~GT~wYH~H~~~q~~~G 148 (559)
T 2q9o_A 69 IVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTECPIPPKGGQRTYRWRARQYGTSWYHSHFSAQYGNG 148 (559)
T ss_dssp EEEETTCEEEEEEEEECSSCCBCEEEETCCCTTCGGGSCCBTTTBCCBCTTTEEEEEEEECCSCEEEEEEECSTTGGGGT
T ss_pred EEEeCCCEEEEEEEeCCCCCCceEEcCCCccCCCCCcCCCCccccCccCCCCCeEEEEEECCCCEEEEEEEcccchhcCC
Confidence 5788999999887532 33322100000001111100 01123 543 67888999999999998887889
Q ss_pred CEEEEEecCCC
Q 043413 114 MKVGIDTLAST 124 (185)
Q Consensus 114 mKl~I~V~~~~ 124 (185)
|...|.|....
T Consensus 149 l~G~liV~~~~ 159 (559)
T 2q9o_A 149 VVGTIQINGPA 159 (559)
T ss_dssp CEEEEEEECCC
T ss_pred ceEEEEecCCC
Confidence 99999997643
No 79
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=62.23 E-value=2.2 Score=32.77 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=18.8
Q ss_pred ccCCeEecCCeeeeeecCC-CcEEEE
Q 043413 44 ATSQKFLVGDNLIFQYPSS-HDVTEV 68 (185)
Q Consensus 44 as~~~f~vGDtLvF~y~~~-H~Vv~V 68 (185)
+..+.+++||.++|++... .-+++|
T Consensus 112 v~dn~L~~GD~cvFeli~~~~~~f~V 137 (146)
T 4i1k_A 112 TLENNLGEGDVCVFELLRTRDFVLKV 137 (146)
T ss_dssp HHHTTCCTTCEEEEEECSSSSCEEEE
T ss_pred HHHcCCCCCCEEEEEEecCCceEEEE
Confidence 4567899999999999875 224454
No 80
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Probab=60.64 E-value=10 Score=33.31 Aligned_cols=76 Identities=8% Similarity=0.071 Sum_probs=43.6
Q ss_pred CeEecCCeeeeeecCC----CcEEEEcCcCcccccCCCCccccCCCCc---EEec--CCCcceeEEcCCCC----CCCCC
Q 043413 47 QKFLVGDNLIFQYPSS----HDVTEVSKPDYDSCQTSNKIKSYTDGNT---VIPL--SSPGKRYFICGAPG----HCTVG 113 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~----H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~~---~v~L--~~~G~~YFiC~~~~----HC~~G 113 (185)
++++.||+|+.++.+. ++|..=-. .+. ....+.......|.+ .|++ +.+|+|||-|-..+ |-..|
T Consensus 49 i~~~~Gd~v~v~~~N~l~~~tsiHwHG~-~~~-~~~DG~~~~I~PG~~~~Y~f~~~~~~~GT~wYH~H~~~~t~~q~~~G 126 (439)
T 2xu9_A 49 LRVRPRDTVRLTLENRLPEPTNLHWHGL-PIS-PKVDDPFLEIPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAG 126 (439)
T ss_dssp EEECTTCEEEEEEEECSSSCBCCEEETC-CCC-TTTSCTTCCBCTTCEEEEEEECCSSCCEEEEEECCCTTSHHHHHHTT
T ss_pred EEEeCCCEEEEEEEECCCCCcceEeCCC-CCC-ccccCCcccCCCCCeEEEEEecCCCCCcceEeccCCCCchHHHHHhh
Confidence 5789999998877544 33322100 000 011111112334543 4555 36899999998732 44579
Q ss_pred CEEEEEecCCC
Q 043413 114 MKVGIDTLAST 124 (185)
Q Consensus 114 mKl~I~V~~~~ 124 (185)
|...|.|....
T Consensus 127 l~G~liV~~~~ 137 (439)
T 2xu9_A 127 LLGALVVESSL 137 (439)
T ss_dssp CCEEEEECCGG
T ss_pred CeEEEEEcCcc
Confidence 99999997643
No 81
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=60.28 E-value=13 Score=31.43 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=28.3
Q ss_pred EEecCCCcceeEEcCCCCCCC------CCCEEEEEecCCC
Q 043413 91 VIPLSSPGKRYFICGAPGHCT------VGMKVGIDTLAST 124 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~------~GmKl~I~V~~~~ 124 (185)
.|..+.+|.+.|-|-+..|-. .||...|.|....
T Consensus 239 ~~~a~~pG~w~~hCH~~~H~~~g~~~~~Gm~~~i~~~g~~ 278 (318)
T 3g5w_A 239 ILNMDNPGLWMIHDHVDTHTTNGDKPDGGIMTTIEYEEVG 278 (318)
T ss_dssp EEECCSCSEEEEEESSGGGSCBTTBSSCBSEEEEEETTTC
T ss_pred EEECCCCeeEEEEeccHHHhhccCcCCCCCEEEEEECCCC
Confidence 567889999999999999987 4778888887654
No 82
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=59.73 E-value=1.3 Score=37.26 Aligned_cols=76 Identities=13% Similarity=0.203 Sum_probs=32.1
Q ss_pred CCeEecCCeeeeeecCC--C-cEEEE--cCcCccc--ccCCCCccccCCCC---cEEecCCCcceeEEcCCCCCCCCCCE
Q 043413 46 SQKFLVGDNLIFQYPSS--H-DVTEV--SKPDYDS--CQTSNKIKSYTDGN---TVIPLSSPGKRYFICGAPGHCTVGMK 115 (185)
Q Consensus 46 ~~~f~vGDtLvF~y~~~--H-~Vv~V--s~~~Yd~--C~~s~~~~~~s~G~---~~v~L~~~G~~YFiC~~~~HC~~GmK 115 (185)
..+++.||+++|+.-+. . ....+ ....|.. -. .+.+ ....|. -.|+.+.+|.++|.|-+..|...||.
T Consensus 216 ~l~v~~G~~vrlrliN~g~~~~~h~~hlhG~~~~~dG~~-~dtv-~l~pger~~v~~~~~~pG~~~~hch~~~H~~~GM~ 293 (306)
T 1sdd_A 216 DITVCAHDHISWHLIGMSSGPELFSIHFNGQVLEQNHHK-ISAI-TLVSATSTTANMTVSPEGRWTIASLIPRHFQAGMQ 293 (306)
T ss_dssp CCCCCCC------BBCCCSSSCEECCBCSSTTCEETTEE-CSCC-CEETTCCBC--------CCCCCBCCSTTTGGGTCB
T ss_pred ceEEcCCCEEEEEEEeCCCCCccEEEEECCcEeeeCCEE-cceE-EECCCcEEEEEEEcCCCeEEEEEeCChHHHhcCCe
Confidence 35678899888877543 1 23222 1111111 00 0111 111232 25677889999999999999999999
Q ss_pred EEEEecCC
Q 043413 116 VGIDTLAS 123 (185)
Q Consensus 116 l~I~V~~~ 123 (185)
..+.|...
T Consensus 294 ~~~~V~~~ 301 (306)
T 1sdd_A 294 AYIDIKNC 301 (306)
T ss_dssp CCC-----
T ss_pred EEEEEecC
Confidence 99998754
No 83
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=59.16 E-value=12 Score=34.78 Aligned_cols=34 Identities=6% Similarity=0.004 Sum_probs=29.3
Q ss_pred EEecCCCcceeEEcCCCCCCCCCCEEEEEecCCC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVGMKVGIDTLAST 124 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~ 124 (185)
.|++++.|+|||-|-...+-..||...|.|....
T Consensus 156 ~f~~~q~GT~WYHsH~~~q~~~GL~G~lIV~~p~ 189 (580)
T 3sqr_A 156 KFQVTQYGTTWYHSHFSLQYGDGLFGPLIINGPA 189 (580)
T ss_dssp EEECCCCEEEEEEECSTTGGGGTCEEEEEEECCC
T ss_pred EEECCCCcceEEeecccccccCcCEEEEEeeCcc
Confidence 6788899999999999888788999999997543
No 84
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=57.59 E-value=40 Score=30.36 Aligned_cols=35 Identities=6% Similarity=0.108 Sum_probs=29.1
Q ss_pred EEec-CCCcceeEEcCCCCCCCCCCEEEEEecCCCC
Q 043413 91 VIPL-SSPGKRYFICGAPGHCTVGMKVGIDTLASTS 125 (185)
Q Consensus 91 ~v~L-~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~~ 125 (185)
.|++ ++.|+|||-|-...+-..||...|.|.....
T Consensus 97 ~f~~~~~~GT~wYHsH~~~q~~~GL~G~lIV~~~~~ 132 (495)
T 3t6v_A 97 NFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPND 132 (495)
T ss_dssp EEECTTCCEEEEEEECSTTGGGGTCEEEEEEECTTC
T ss_pred EEEeCCCCceeeeeccchhHHhcCceEEEEEcCccc
Confidence 5677 6799999999998877789999999976543
No 85
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=57.02 E-value=40 Score=30.39 Aligned_cols=35 Identities=6% Similarity=0.114 Sum_probs=29.0
Q ss_pred EEec-CCCcceeEEcCCCCCCCCCCEEEEEecCCCC
Q 043413 91 VIPL-SSPGKRYFICGAPGHCTVGMKVGIDTLASTS 125 (185)
Q Consensus 91 ~v~L-~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~~ 125 (185)
.|++ ++.|+|||-|-...+-..||...|.|.....
T Consensus 96 ~f~~~~~~GT~wYHsH~~~q~~~GL~G~lIV~~~~~ 131 (499)
T 3pxl_A 96 DFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPND 131 (499)
T ss_dssp EEECSSCCEEEEEEECSTTGGGGTCEEEEEEECTTC
T ss_pred EEEcCCCCceeeeeccchhHHhccceeEEEEcCCcc
Confidence 5667 6799999999998777789999999976543
No 86
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=54.14 E-value=25 Score=29.42 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=0.0
Q ss_pred CeEecCCeeeeeecCC---------CcEEEE---cCcCcccccCCCCccccCCCCc---EEecCCC-------------c
Q 043413 47 QKFLVGDNLIFQYPSS---------HDVTEV---SKPDYDSCQTSNKIKSYTDGNT---VIPLSSP-------------G 98 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~---------H~Vv~V---s~~~Yd~C~~s~~~~~~s~G~~---~v~L~~~-------------G 98 (185)
+++++||+|++++.+. |.+.+- +......|.+. .|.+ .|+++.+ |
T Consensus 44 i~~~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~dG~~~~~~~i~-------PG~~~~Y~~~~~~P~~~~~~~~~~~~~g 116 (313)
T 3tas_A 44 IELNEGDTLHIEFENTMDVPVSLHVHGLDYEISSDGTKQSRSDVE-------PGGTRTYTWRTHVPGRRADGTWRAGSAG 116 (313)
T ss_dssp EEEETTCEEEEEEEECSSSCBCCEESSSBCCGGGSCSTTTTCCBC-------TTCEEEEEEBCCCCEECTTSCEECCSCE
T ss_pred EEEECCCEEEEEEEECCCCCccEeecCCcCCccCCCCccccCCcC-------CCCEEEEEEEeccCCccccccccCCCce
Q ss_pred ceeEEcCCCCCCC------CCCEEEEEecCCCCCCC
Q 043413 99 KRYFICGAPGHCT------VGMKVGIDTLASTSPAP 128 (185)
Q Consensus 99 ~~YFiC~~~~HC~------~GmKl~I~V~~~~~~~~ 128 (185)
+|||-|-+.+.=+ .||...|.|.......+
T Consensus 117 t~~YH~h~~~~~~~~~~~~~Gl~G~liV~~~~~~~~ 152 (313)
T 3tas_A 117 YWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKGDVLP 152 (313)
T ss_dssp EEEEECSSSSSTTCHHHHHHTCEEEEEEECTTCBCC
T ss_pred EEEEeecCcccccchhhhhccccCceEeeccccccc
No 87
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum}
Probab=53.03 E-value=3.9 Score=36.36 Aligned_cols=72 Identities=13% Similarity=-0.008 Sum_probs=45.7
Q ss_pred CeEecCCeeeeeecCC----CcEEEE-----c-CcCcccccCCCCccccCCCCc---EEecC-CCcceeEEcCC----CC
Q 043413 47 QKFLVGDNLIFQYPSS----HDVTEV-----S-KPDYDSCQTSNKIKSYTDGNT---VIPLS-SPGKRYFICGA----PG 108 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~----H~Vv~V-----s-~~~Yd~C~~s~~~~~~s~G~~---~v~L~-~~G~~YFiC~~----~~ 108 (185)
+.++.||+|+.++.+. ++|..= . .++.-.|-+ ..|.+ .|++. ..|+|||-|-. ..
T Consensus 40 i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~~~DG~~~~~i-------~PG~~~~Y~f~~~~~~GT~wYH~H~~~~~~~ 112 (448)
T 3aw5_A 40 IILRRGQRVDMTLKNKLTEPTIVHWHGFDVNWHNDAHPSFAI-------TPGESYNYSFDVVNRAGTYLYHPHPHGLTAK 112 (448)
T ss_dssp EEEETTCEEEEEEEECSSSCBCEEEETCCCCHHHHTCGGGCB-------CTTCEEEEEEECCSCSEEEEEEECCTTTHHH
T ss_pred EEEeCCCEEEEEEEECCCCceeEEeCCccCCCccCCCCCccC-------CCCCEEEEEEEcCCCCCceEeccCCCCchHH
Confidence 5689999999988654 333221 1 011111322 23433 67777 79999999984 23
Q ss_pred CCCCCCEEEEEecCCCC
Q 043413 109 HCTVGMKVGIDTLASTS 125 (185)
Q Consensus 109 HC~~GmKl~I~V~~~~~ 125 (185)
|-..||-..+.|.....
T Consensus 113 q~~~Gl~G~liV~~~~~ 129 (448)
T 3aw5_A 113 QFYMGQLGLVIVEDSGS 129 (448)
T ss_dssp HHHTTCCEEEEEECTTT
T ss_pred HHhccceEEEEEeCCcc
Confidence 44579999999987654
No 88
>4dny_A Metalloprotease STCE; metzincin, bacterial zinc metalloprotease, O-linked glycoPro hydrolase; 1.61A {Escherichia coli}
Probab=49.33 E-value=5.4 Score=30.45 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=12.6
Q ss_pred ecCCeeeeeecCC-CcEEEE
Q 043413 50 LVGDNLIFQYPSS-HDVTEV 68 (185)
Q Consensus 50 ~vGDtLvF~y~~~-H~Vv~V 68 (185)
.-|++|+|+-+++ ++-+..
T Consensus 76 ~~gK~V~~~S~AgY~S~V~y 95 (126)
T 4dny_A 76 LEGKMVRFVSSAGYSSTVFY 95 (126)
T ss_dssp GTTCEEEEEEECSSCEEEEE
T ss_pred cCCCEEEEEEecCccEEEEE
Confidence 3678888888877 444443
No 89
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=47.07 E-value=25 Score=34.81 Aligned_cols=75 Identities=9% Similarity=0.137 Sum_probs=50.6
Q ss_pred CCeEecCCeeeeeecCC------CcEEEEcCcCcccccCCCCc----cccCCCCc---EEecCCCcceeEEcCCCCCCCC
Q 043413 46 SQKFLVGDNLIFQYPSS------HDVTEVSKPDYDSCQTSNKI----KSYTDGNT---VIPLSSPGKRYFICGAPGHCTV 112 (185)
Q Consensus 46 ~~~f~vGDtLvF~y~~~------H~Vv~Vs~~~Yd~C~~s~~~----~~~s~G~~---~v~L~~~G~~YFiC~~~~HC~~ 112 (185)
..+|+.|++++|++-+. |++ .+....+. . ++. .....|.. .|+++++|.|+|.|-...|=..
T Consensus 272 ~l~v~~Ge~vRlRliNag~~~~~~~~-~i~Gh~f~---v-~p~~~dtv~I~pGer~dVlv~~~~pG~y~i~~h~~~h~~~ 346 (1065)
T 2j5w_A 272 GLSMCAEDRVKWYLFGMGNEVDVHAA-FFHGQALT---N-KNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKA 346 (1065)
T ss_dssp CCEEETTCEEEEEEEECSSTTCCEEE-EETTCCEE---E-TTEEESEEEECBTCEEEEEEECCSCEEEEEEECSHHHHHT
T ss_pred ceEECCCCEEEEEEEcCCcccceeEE-EEcCCEEE---E-CCeeecEEEECCCcEEEEEEEeCCCeeEEEEecCcchhhC
Confidence 46899999999988542 222 23333332 1 111 11223432 6778889999999999988889
Q ss_pred CCEEEEEecCCCC
Q 043413 113 GMKVGIDTLASTS 125 (185)
Q Consensus 113 GmKl~I~V~~~~~ 125 (185)
||...+.|.....
T Consensus 347 Gm~~~~~V~~~~~ 359 (1065)
T 2j5w_A 347 GLQAFFQVQECNK 359 (1065)
T ss_dssp TCEEEEEEECSCC
T ss_pred CCEEEEEEecCCC
Confidence 9999999987655
No 90
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=46.55 E-value=28 Score=31.14 Aligned_cols=34 Identities=6% Similarity=0.061 Sum_probs=28.0
Q ss_pred EEec-CCCcceeEEcCCCCCCCCCCEEEEEecCCC
Q 043413 91 VIPL-SSPGKRYFICGAPGHCTVGMKVGIDTLAST 124 (185)
Q Consensus 91 ~v~L-~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~ 124 (185)
.|++ ++.|+|||-|-...|-..||-..+.|....
T Consensus 96 ~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~ 130 (503)
T 1hfu_A 96 KFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDN 130 (503)
T ss_dssp EECCTTCCEEEEEEECSTTGGGGTCEEEEEEECTT
T ss_pred EEEeCCCCccEEEEecchhhhhCcceeeEEEcCCC
Confidence 5563 568999999999887778999999997654
No 91
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=45.55 E-value=17 Score=30.47 Aligned_cols=35 Identities=9% Similarity=0.070 Sum_probs=28.6
Q ss_pred EEecCCCcceeEEcCCCC-CCCCCCEEEEEecCCCC
Q 043413 91 VIPLSSPGKRYFICGAPG-HCTVGMKVGIDTLASTS 125 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~-HC~~GmKl~I~V~~~~~ 125 (185)
.|+++++|.|+|.|-... |=..||...|.|.....
T Consensus 292 ~v~~~~pG~y~~~~h~~~~h~~~Gm~~~~~V~~~~~ 327 (340)
T 2bw4_A 292 FYTFRQPGVYAYVNHNLIEAFELGAAGHFKVTGEWN 327 (340)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCCC
T ss_pred EEECCCCeeeEEEcCchHHHHhCCCEEEEEECCCCc
Confidence 577888999999999863 55789999999986554
No 92
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}
Probab=44.65 E-value=12 Score=33.81 Aligned_cols=72 Identities=13% Similarity=0.148 Sum_probs=0.0
Q ss_pred CeEecCCeeeeeecCC---------CcEEEE-cCcCcccccCCCCccccCCCCc---EEecCC--CcceeEEcCC----C
Q 043413 47 QKFLVGDNLIFQYPSS---------HDVTEV-SKPDYDSCQTSNKIKSYTDGNT---VIPLSS--PGKRYFICGA----P 107 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~---------H~Vv~V-s~~~Yd~C~~s~~~~~~s~G~~---~v~L~~--~G~~YFiC~~----~ 107 (185)
++++.||+|+.++.+. |.+.+- ..++.-.|-+. .|.+ .|++.. .|+|||-|-. .
T Consensus 84 Ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~~DG~pq~~I~-------PG~s~~Y~f~~~~~~~GT~WYH~H~~~~t~ 156 (481)
T 3zx1_A 84 IEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPIL-------AGEERIYRFEIPQDSAGTYWYHPHPHYTAS 156 (481)
T ss_dssp EEEETTCEEEEEEEECSSSCBCCEEETCCCCGGGSCCTTSCBC-------TTCEEEEEEECCTTCCEEEEEECCCTTTHH
T ss_pred EEEECCcEEEEEEEeCCCCCeeEEecCcccCCccCCCccCcCC-------CCCeEEEEEeCCCCCCceEEEeecCCCcch
Q ss_pred CCCCCCCEEEEEecCCCC
Q 043413 108 GHCTVGMKVGIDTLASTS 125 (185)
Q Consensus 108 ~HC~~GmKl~I~V~~~~~ 125 (185)
.|=..||...+.|.....
T Consensus 157 ~q~~~GL~G~lIV~~~~~ 174 (481)
T 3zx1_A 157 KQVFMGLAGAFVIKAKKD 174 (481)
T ss_dssp HHHHTTCCEEEEEECSSC
T ss_pred hhhhccceEEEEEcCccc
No 93
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A*
Probab=44.20 E-value=26 Score=33.29 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=30.3
Q ss_pred EEecCCCcceeEEcCCCCCCCCCCEEEEEecCCCC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVGMKVGIDTLASTS 125 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~~ 125 (185)
.++.+.+|.++|.|-+..|=..||...+.|.....
T Consensus 298 ~~~~~~pG~w~~hCH~~~H~~~GM~~~~~V~~~~~ 332 (742)
T 2r7e_A 298 QTLLMDLGQFLLFCHISSHQHDGMEAYVKVDSCPE 332 (742)
T ss_dssp EECCCSCSEECCCCCSSSSSTTSCCBCEEECCCCC
T ss_pred EEEeCCCeeEEEEeCChhHHhCCCeEEEEEecCCc
Confidence 56778899999999999999999999999876544
No 94
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=44.04 E-value=62 Score=26.87 Aligned_cols=30 Identities=13% Similarity=0.061 Sum_probs=20.9
Q ss_pred CCcceeEEcCCCCC------CCCCCEEEEEecCCCC
Q 043413 96 SPGKRYFICGAPGH------CTVGMKVGIDTLASTS 125 (185)
Q Consensus 96 ~~G~~YFiC~~~~H------C~~GmKl~I~V~~~~~ 125 (185)
..|++||-|-..+. =..||...|.|.....
T Consensus 130 ~~gt~~YH~H~~~~~~~~~~~~~GL~G~liV~~~~~ 165 (299)
T 3t9w_A 130 TAGYWHYHDHAMGTEHGTEGVLKGLYGALVVRRQGD 165 (299)
T ss_dssp CCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTTC
T ss_pred CceeEEEecCCcccccchhhhcccccceEEEecccc
Confidence 45999999965331 1249999999976544
No 95
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=43.33 E-value=8.9 Score=27.12 Aligned_cols=14 Identities=50% Similarity=0.873 Sum_probs=11.3
Q ss_pred CeEecCCeeeee-ec
Q 043413 47 QKFLVGDNLIFQ-YP 60 (185)
Q Consensus 47 ~~f~vGDtLvF~-y~ 60 (185)
+.|++||.|+|+ |.
T Consensus 36 r~~~vGD~l~l~E~~ 50 (83)
T 3iuw_A 36 RNFQVGDILILEEYM 50 (83)
T ss_dssp SCCCTTCEEEEEEEE
T ss_pred cCCCCCCEEEEEEcc
Confidence 459999999995 54
No 96
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=42.93 E-value=50 Score=26.97 Aligned_cols=77 Identities=12% Similarity=0.065 Sum_probs=43.7
Q ss_pred CeEecCCeeeeeecCC----CcEEEE--cC-cCcccccCCCCccccCCCCc---EEecCC-------------CcceeEE
Q 043413 47 QKFLVGDNLIFQYPSS----HDVTEV--SK-PDYDSCQTSNKIKSYTDGNT---VIPLSS-------------PGKRYFI 103 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~----H~Vv~V--s~-~~Yd~C~~s~~~~~~s~G~~---~v~L~~-------------~G~~YFi 103 (185)
++++.||+|++++.+. ++|..= .. ...|.-..+ ......|.+ .|++++ .|++||-
T Consensus 38 i~~~~Gd~v~v~~~N~~~~~~siH~HG~~~~~~~DG~~~t--~~~i~pG~~~~Y~f~~~~~~~~~~g~~~~~~~gt~~YH 115 (276)
T 3kw8_A 38 IEVNEGDTLHIEFTNTMDVRASLHVHGLDYEISSDGTAMN--KSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYH 115 (276)
T ss_dssp EEEETTCEEEEEEEECSSSCBCCEESSSBCCGGGSCCTTT--TCSBCTTCEEEEEEECCCCEECTTSCEECCSCEEEEEE
T ss_pred EEEECCCEEEEEEEECCCCCccEeecCcccCCccCCCcCC--cCCCCCCCEEEEEEEcCCccccccCccCCCCCEEEEEe
Confidence 5689999998888654 333221 00 011110000 011223443 566654 4888899
Q ss_pred cCCCC------CCCCCCEEEEEecCCCC
Q 043413 104 CGAPG------HCTVGMKVGIDTLASTS 125 (185)
Q Consensus 104 C~~~~------HC~~GmKl~I~V~~~~~ 125 (185)
|-..+ |=..||...|.|.....
T Consensus 116 ~h~~~~~~~~~~~~~Gl~G~liV~~~~~ 143 (276)
T 3kw8_A 116 DHVVGTEHGTGGIRNGLYGPVIVRRKGD 143 (276)
T ss_dssp CSSSSSTTCHHHHHHTCEEEEEEECTTC
T ss_pred cCccccccchhhhhCccEEEEEEecCCC
Confidence 98753 34569999999987655
No 97
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=42.67 E-value=23 Score=25.26 Aligned_cols=15 Identities=27% Similarity=0.131 Sum_probs=11.7
Q ss_pred CeEecCCeeeeeecC
Q 043413 47 QKFLVGDNLIFQYPS 61 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~ 61 (185)
..+++||.+......
T Consensus 6 ~~~~VG~rV~V~~~~ 20 (95)
T 1whl_A 6 SGIDVGCPVKVQLRS 20 (95)
T ss_dssp CCCCSSCEEEEECSS
T ss_pred ccCcCCCEEEEecCC
Confidence 468999999987654
No 98
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=39.81 E-value=4.8 Score=38.65 Aligned_cols=77 Identities=13% Similarity=0.049 Sum_probs=46.3
Q ss_pred CCeEecCCeeeeeecCC------CcEEEEcCcCcccccC----CCCccccCCCCc--EEecCCCcceeEEcCCCCCCCCC
Q 043413 46 SQKFLVGDNLIFQYPSS------HDVTEVSKPDYDSCQT----SNKIKSYTDGNT--VIPLSSPGKRYFICGAPGHCTVG 113 (185)
Q Consensus 46 ~~~f~vGDtLvF~y~~~------H~Vv~Vs~~~Yd~C~~----s~~~~~~s~G~~--~v~L~~~G~~YFiC~~~~HC~~G 113 (185)
..+|+.||+++|.+.+. |.+.. ....|.--.. .+.+...-++.. .|+.+.+|.+.|.|-+..|...|
T Consensus 369 ~l~v~~Ge~vr~rliN~g~~~~~H~fHl-hGh~f~Vv~~dg~~~Dtv~l~Pg~~~~v~~~ad~pG~w~~hcH~~~H~~~G 447 (770)
T 2r7e_B 369 GLVMAQDQRIRWYLLSMGSNENIHSIHF-SGHVFTVRKKEEYKMALYNLYPGVFETVEMLPSKAGIWRVECLIGEHLHAG 447 (770)
T ss_dssp CCCCCSSSCEEEECCCCCSSSCCCEEEB-SSCCEECCSSSCCEESEEECCTTCCCEEEECCSSCBCCCBCCCSHHHHTTB
T ss_pred CeEEeCCCEEEEEEEeCCCCcceEEEEE-cCCEEEEEecCCceeeEEEECCCeEEEEEEEeCCCCceEEEeccccccccc
Confidence 35688999998887532 33321 1111111110 011112222222 56677899999999999999999
Q ss_pred CEEEEEecCC
Q 043413 114 MKVGIDTLAS 123 (185)
Q Consensus 114 mKl~I~V~~~ 123 (185)
|...+.|...
T Consensus 448 M~~~~~V~s~ 457 (770)
T 2r7e_B 448 MSTLFLVYSN 457 (770)
T ss_dssp CCCCCCBCCS
T ss_pred cccccccccc
Confidence 9999988543
No 99
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=39.61 E-value=13 Score=29.46 Aligned_cols=12 Identities=8% Similarity=0.149 Sum_probs=5.9
Q ss_pred cCCCcceeEEcCCC
Q 043413 94 LSSPGKRYFICGAP 107 (185)
Q Consensus 94 L~~~G~~YFiC~~~ 107 (185)
....|.| +|.+.
T Consensus 114 ~~DsG~Y--~C~~~ 125 (282)
T 1qok_A 114 SEDTAVY--YCNEG 125 (282)
T ss_dssp GGGCEEE--EEEEE
T ss_pred hhhCEEE--EEEec
Confidence 3345654 46543
No 100
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=39.50 E-value=53 Score=27.21 Aligned_cols=27 Identities=4% Similarity=-0.149 Sum_probs=20.9
Q ss_pred cceeEEcCCCC--CCCCCCEEEEEecCCC
Q 043413 98 GKRYFICGAPG--HCTVGMKVGIDTLAST 124 (185)
Q Consensus 98 G~~YFiC~~~~--HC~~GmKl~I~V~~~~ 124 (185)
|++||-|-... |-..||...|.|....
T Consensus 140 GT~wYHsH~~~~~q~~~GL~G~liV~~~~ 168 (306)
T 1sdd_A 140 LTHIYYSYVNLVEDFNSGLIGPLLICKKG 168 (306)
T ss_dssp EEEEEECCSSSHHHHHTTCCEEEEEECTT
T ss_pred eEEEEeccCCchhhhccCceEEEEEccCC
Confidence 79999998654 4467999888887654
No 101
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=38.55 E-value=18 Score=34.71 Aligned_cols=30 Identities=3% Similarity=-0.085 Sum_probs=24.5
Q ss_pred CCcceeEEcCCCC--CCCCCCEEEEEecCCCC
Q 043413 96 SPGKRYFICGAPG--HCTVGMKVGIDTLASTS 125 (185)
Q Consensus 96 ~~G~~YFiC~~~~--HC~~GmKl~I~V~~~~~ 125 (185)
..|++||-|.+.. |...||...|.|.....
T Consensus 269 ~~Gt~wYHsh~~~~~q~~~GL~G~liV~~~~~ 300 (770)
T 2r7e_B 269 DCKAWAYSSDVDLEKDVHSGLIGPLLVCHTNT 300 (770)
T ss_dssp SEEEEEECCCSSSSHHHHTSCCEEEEEECSTT
T ss_pred CCeeEEeeccCCcHHHHhCCceeeEEECCCcc
Confidence 5799999998865 57789999999887654
No 102
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=38.55 E-value=6.2 Score=29.82 Aligned_cols=13 Identities=8% Similarity=0.064 Sum_probs=6.0
Q ss_pred EecCCCcceeEEcCC
Q 043413 92 IPLSSPGKRYFICGA 106 (185)
Q Consensus 92 v~L~~~G~~YFiC~~ 106 (185)
+++...|.| .|.+
T Consensus 100 v~~~D~G~Y--~C~~ 112 (233)
T 3bqu_C 100 MLSEDVADY--YCLQ 112 (233)
T ss_dssp --CCCCSEE--EEEE
T ss_pred CCHHHCEEE--EEEE
Confidence 344556664 4554
No 103
>2vgd_A Enxyn11A; glycoside hydrolase, xylanase, beta jelly roll, hydrolase; HET: XYP FX3; 1.8A {Escherichia coli} PDB: 2vuj_A 2vul_A*
Probab=37.06 E-value=12 Score=31.05 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=15.3
Q ss_pred CchhHHHHHHHHHH-HHhhhcceeEEEEcCCCCCCCCCCCccccccC
Q 043413 1 MAVLRTFICVAATA-VLIQLSMAANYTVGGPNGGWDTATDLRTWATS 46 (185)
Q Consensus 1 Ma~~~~~~~l~~~a-ll~~~a~A~~~~VGg~~~GW~~~~~Y~~Was~ 46 (185)
|-+.+.|+++++.+ |++..+.+...+-.. ..|+..+.+|..|.++
T Consensus 1 m~~~~~l~~~~~a~~~~~~~~~a~~~~t~n-~~G~~~Gy~Y~~W~dg 46 (218)
T 2vgd_A 1 MISLKRVAALLCVAGLGMSAANAQTCLTSS-QTGTNNGFYYSFWKDS 46 (218)
T ss_dssp ----------------------CCEEECSC-EEEEETTEEEEEEECS
T ss_pred CeeHHHHHHHHHHHHhccchhccccccccC-cccccCCEEEEEEecC
Confidence 55555555554433 333334444433333 4677777889999876
No 104
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=35.16 E-value=10 Score=27.92 Aligned_cols=11 Identities=36% Similarity=0.679 Sum_probs=9.9
Q ss_pred CeEecCCeeee
Q 043413 47 QKFLVGDNLIF 57 (185)
Q Consensus 47 ~~f~vGDtLvF 57 (185)
+.+++||+|+|
T Consensus 32 ~~ikvGD~I~f 42 (109)
T 2z0t_A 32 RQIKPGDIIIF 42 (109)
T ss_dssp GGCCTTCEEEE
T ss_pred hcCCCCCEEEE
Confidence 46899999999
No 105
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=34.96 E-value=15 Score=30.76 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=28.8
Q ss_pred cCCCcceeEEcCCCCCCCCCCEEEEEecCCCCC
Q 043413 94 LSSPGKRYFICGAPGHCTVGMKVGIDTLASTSP 126 (185)
Q Consensus 94 L~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~~~ 126 (185)
.+.+|.+.|-|-+..|=..||...++|.....+
T Consensus 259 ~dnPG~w~~HCHi~~H~~~GM~~~f~V~~~~~~ 291 (299)
T 3t9w_A 259 GVGPGMWMYHCHVQNHSDMGMAGMFLVRNADGT 291 (299)
T ss_dssp TTCSEEEEEEECSHHHHHTTCEEEEEEECTTSC
T ss_pred CCCCeeEEEEcCCHHHHhcCCeEEEEEECCCCC
Confidence 345899999999999999999999999887763
No 106
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=34.94 E-value=1.2 Score=24.84 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=13.5
Q ss_pred CCeEecCCeeeeeecCC
Q 043413 46 SQKFLVGDNLIFQYPSS 62 (185)
Q Consensus 46 ~~~f~vGDtLvF~y~~~ 62 (185)
++.|.|.|.|.|.|...
T Consensus 4 skpfnvddvlkftftge 20 (27)
T 2hzs_I 4 SKPFNVDDVLKFTFTGE 20 (27)
T ss_dssp --CCCHHHHHHHHHHCC
T ss_pred CCCcChhheEEEEeccc
Confidence 46799999999999876
No 107
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=34.77 E-value=17 Score=25.93 Aligned_cols=30 Identities=3% Similarity=0.070 Sum_probs=24.0
Q ss_pred EEEEcCCCCCCCCCCCccccccCCeEecCCeeeeee
Q 043413 24 NYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQY 59 (185)
Q Consensus 24 ~~~VGg~~~GW~~~~~Y~~Was~~~f~vGDtLvF~y 59 (185)
+.+||| ..| ...++.|-.. |..||.|.++.
T Consensus 41 ~~~l~D-eTG---~I~~tlW~~~--l~~Gdvv~i~n 70 (106)
T 2k75_A 41 QGYIED-DTA---RIRISSFGKQ--LQDSDVVRIDN 70 (106)
T ss_dssp EEEEEC-SSC---EEEEEEESSC--CCTTEEEEEEE
T ss_pred EEEEEc-CCC---eEEEEEEcCc--cCCCCEEEEEe
Confidence 578999 777 3457888776 99999999984
No 108
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=34.56 E-value=10 Score=28.15 Aligned_cols=13 Identities=31% Similarity=0.583 Sum_probs=10.7
Q ss_pred CeEecCCeeeeee
Q 043413 47 QKFLVGDNLIFQY 59 (185)
Q Consensus 47 ~~f~vGDtLvF~y 59 (185)
+.+++||+|+|+-
T Consensus 33 ~~i~vGD~I~f~~ 45 (113)
T 1xne_A 33 KDIKRGDKIIFND 45 (113)
T ss_dssp TTCCTTCEEEETT
T ss_pred hccCCCCEEEEcc
Confidence 4589999999954
No 109
>2b1y_A Hypothetical protein ATU1913; NEW fold, structural genomics, PSI, PR structure initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: b.156.1.1
Probab=34.29 E-value=6 Score=29.22 Aligned_cols=76 Identities=13% Similarity=0.132 Sum_probs=49.4
Q ss_pred eEecCCeeeeeecCCCcEEEEcCcCcccccCCC----CccccCCCCcEEecCCCcceeEEcCCCCCCCCCCEEEEEecCC
Q 043413 48 KFLVGDNLIFQYPSSHDVTEVSKPDYDSCQTSN----KIKSYTDGNTVIPLSSPGKRYFICGAPGHCTVGMKVGIDTLAS 123 (185)
Q Consensus 48 ~f~vGDtLvF~y~~~H~Vv~Vs~~~Yd~C~~s~----~~~~~s~G~~~v~L~~~G~~YFiC~~~~HC~~GmKl~I~V~~~ 123 (185)
...-||+|+.+-+..-||..+|...|..-.-.. -...++.+.-.|++-..|..|.+=...+|+. .-+-.|.|.++
T Consensus 15 ~l~~Gd~V~V~cs~~~nVrLmd~~Nf~~~~~g~~~~~~GG~~~~~P~~itVP~sG~W~vvID~~g~~~-~~~~SI~vipa 93 (104)
T 2b1y_A 15 ELRAGTTLEISLSSVNNVRLMTGANFQRFTELLDFKYLGGVAKKSPIRIAVPETMHWHLIIDAEGHSG-LAESSVKMLPA 93 (104)
T ss_dssp CCCTTCCCCCCCSSSCCCCCCCHHHHHHHHHHTTCCCSCCCCCSSSCCCCCCSSSCCCCCCCCTTSSS-CCCCCCCCCCC
T ss_pred hccCCCEEEEEeCCceeEEEcCchhhhhhhccCceeEeccccccCCEEEECCCCceEEEEEecCCcCC-cceeeEEEecC
Confidence 677899999999877888888776665322111 1122344555677777888777777777765 45666666554
Q ss_pred C
Q 043413 124 T 124 (185)
Q Consensus 124 ~ 124 (185)
.
T Consensus 94 ~ 94 (104)
T 2b1y_A 94 Q 94 (104)
T ss_dssp C
T ss_pred C
Confidence 4
No 110
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=31.99 E-value=21 Score=32.98 Aligned_cols=35 Identities=14% Similarity=0.084 Sum_probs=30.2
Q ss_pred EEecCCCcceeEEcCCCCCCCCCCEEEEEecCCCC
Q 043413 91 VIPLSSPGKRYFICGAPGHCTVGMKVGIDTLASTS 125 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~~ 125 (185)
.|..+.+|.+.|.|-+..|-..||...+.|.....
T Consensus 296 ~~~~~~pG~w~~hch~~~h~~~Gm~~~~~V~~~~c 330 (647)
T 1sdd_B 296 EMKASKPGWWLLDTEVGEIQRAGMQTPFLIVDREC 330 (647)
T ss_dssp EEECCSSEEEEEECCCHHHHTTTCEEEEEEECTTC
T ss_pred EEEeccceEeecccCcccccccccccceeeecccc
Confidence 56778899999999999999999999999975433
No 111
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=31.39 E-value=18 Score=27.85 Aligned_cols=13 Identities=8% Similarity=0.115 Sum_probs=6.4
Q ss_pred CeEecCCeeeeee
Q 043413 47 QKFLVGDNLIFQY 59 (185)
Q Consensus 47 ~~f~vGDtLvF~y 59 (185)
.++..|+++++.-
T Consensus 44 ~~v~~G~~v~L~C 56 (252)
T 3bkj_L 44 LPVNLGEQASISC 56 (252)
T ss_dssp EEECTTSCEEEEE
T ss_pred EEEeCCCcEEEEE
Confidence 3455555555543
No 112
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase, multicopper oxidase, hexamer; 2.30A {Streptomyces antibioticus} PDB: 3gyr_A
Probab=30.98 E-value=1.4e+02 Score=27.63 Aligned_cols=34 Identities=9% Similarity=0.016 Sum_probs=26.8
Q ss_pred EEecC-CCcceeEEcCCCC----CCCCCCEEEEEecCCC
Q 043413 91 VIPLS-SPGKRYFICGAPG----HCTVGMKVGIDTLAST 124 (185)
Q Consensus 91 ~v~L~-~~G~~YFiC~~~~----HC~~GmKl~I~V~~~~ 124 (185)
.|+++ ..|++||-|-..+ |=..||...|.|....
T Consensus 158 ~f~~~~~aGT~wYH~H~~~~t~~q~~~GL~G~liV~~~~ 196 (612)
T 2g23_A 158 EYPNDHQATQWWYHDHAMNITRWNVMAGLYGTYLVRDDE 196 (612)
T ss_dssp EECCCSCSCEEEEEECCTTTHHHHTTTTCEEEEEEECHH
T ss_pred EEEecCCCceEEEecccCCcchhhhhccceeEEEEcCcc
Confidence 55665 5899999998865 5568999999997654
No 113
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=30.58 E-value=18 Score=24.80 Aligned_cols=16 Identities=19% Similarity=0.517 Sum_probs=13.5
Q ss_pred CeEecCCeeeeeecCC
Q 043413 47 QKFLVGDNLIFQYPSS 62 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~ 62 (185)
..|++||.|.|.|...
T Consensus 52 ~~lk~Gd~V~F~~~~~ 67 (80)
T 2qcp_X 52 SEIKTGDKVAFNFVQQ 67 (80)
T ss_dssp CCCCTTCEEEEEEEEE
T ss_pred hcCCCCCEEEEEEEEe
Confidence 5699999999999744
No 114
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=30.49 E-value=18 Score=25.29 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=15.2
Q ss_pred cccCCeEecCCeeeeeecCC
Q 043413 43 WATSQKFLVGDNLIFQYPSS 62 (185)
Q Consensus 43 Was~~~f~vGDtLvF~y~~~ 62 (185)
.+.-..|++||.|.|.|...
T Consensus 56 ~~~l~~lk~Gd~V~F~~~~~ 75 (88)
T 2vb2_X 56 QTKMSEIKTGDKVAFNFVQQ 75 (88)
T ss_dssp TCEECCCCTTCEEEEEEEEE
T ss_pred hhhhhcCCCCCEEEEEEEEe
Confidence 33345799999999999744
No 115
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A*
Probab=29.40 E-value=16 Score=34.82 Aligned_cols=78 Identities=9% Similarity=0.045 Sum_probs=49.0
Q ss_pred CeEecCCeeeeeecC-----C-CcEEEEcCcCcccccCCCCccccCCCCc---EEecCCCcceeEEcCCCCCCCCCCEEE
Q 043413 47 QKFLVGDNLIFQYPS-----S-HDVTEVSKPDYDSCQTSNKIKSYTDGNT---VIPLSSPGKRYFICGAPGHCTVGMKVG 117 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~-----~-H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~~---~v~L~~~G~~YFiC~~~~HC~~GmKl~ 117 (185)
.+++.||+++|..-+ . |++..- ...|+--....-+.....|.. .|+.+.+|.++|-|-+-.|=..||...
T Consensus 628 l~v~~Ge~vr~rliN~g~~~~~h~~Hlh-Gh~f~v~~~~~Dtv~l~Pg~~~~v~~~ad~pG~w~~hcH~~~H~~~GM~~~ 706 (742)
T 2r7e_A 628 LSVCLHEVAYWYILSIGAQTDFLSVFFS-GYTFKHKMVYEDTLTLFPFSGETVFMSMENPGLWILGCHNSDFRNRGMTAL 706 (742)
T ss_dssp CCCCSSCCCEEEEEECSSCCCCCCCEES-SSCCCCBSSSBCSSCCCCCSSEECCEECCCCCCSCCEECCCSTTHHHHSCC
T ss_pred EEEeCCCEEEEEEEeCCCCcceEEEEEc-CcEEEEeccceeEEEECCCcEEEEEEEcCCCeEEEEEeCCchHHhCCCeEE
Confidence 688999999987743 1 555332 112221111111111223332 567788999999999999988899999
Q ss_pred EEecCCCC
Q 043413 118 IDTLASTS 125 (185)
Q Consensus 118 I~V~~~~~ 125 (185)
+.|....-
T Consensus 707 ~~V~~~~~ 714 (742)
T 2r7e_A 707 LKVSSCDK 714 (742)
T ss_dssp CCCCCCCC
T ss_pred EEEEeCCC
Confidence 99976543
No 116
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=28.02 E-value=22 Score=24.56 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=15.0
Q ss_pred ccCCeEecCCeeeeeecCC
Q 043413 44 ATSQKFLVGDNLIFQYPSS 62 (185)
Q Consensus 44 as~~~f~vGDtLvF~y~~~ 62 (185)
+.-..+++||.|.|.+...
T Consensus 43 ~~l~~lk~Gd~V~F~~~~~ 61 (82)
T 2l55_A 43 GLPQGLKAGDRVAFSFRLD 61 (82)
T ss_dssp CCCSSCSTTCEEEEEEEEE
T ss_pred hHhhcCCCCCEEEEEEEEC
Confidence 3345799999999999754
No 117
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase, oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A 2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A 3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A 3uac_A 3uab_A 3uae_A 3nsy_A ...
Probab=26.63 E-value=22 Score=32.19 Aligned_cols=72 Identities=8% Similarity=0.047 Sum_probs=44.1
Q ss_pred CeEecCCeeeeeecCC----CcEEE-----Ec-CcCcccccCCCCccccCCCCc---EEecCC-CcceeEEcCCCC----
Q 043413 47 QKFLVGDNLIFQYPSS----HDVTE-----VS-KPDYDSCQTSNKIKSYTDGNT---VIPLSS-PGKRYFICGAPG---- 108 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~----H~Vv~-----Vs-~~~Yd~C~~s~~~~~~s~G~~---~v~L~~-~G~~YFiC~~~~---- 108 (185)
++++.||+|+.++.+. ++|.. -. .++.-.|- ...|.+ .|+++. .|++||-|-..+
T Consensus 50 i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~~~DG~p~~~-------i~PG~~~~Y~f~~~~~aGT~wYH~H~~~~t~~ 122 (488)
T 3od3_A 50 VKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEVDGGPQGI-------IPPGGKRSVTLNVDQPAATCWFHPHQHGKTGR 122 (488)
T ss_dssp EEEETTCEEEEEEEECSSSCBCCEEETCCCCHHHHCCTTCC-------BCTTCEEEEEEECCSCSEEEEEECCCTTTHHH
T ss_pred EEEeCCeEEEEEEEeCCcCceeEeecccccCcccCCCCcCc-------CcCCCeEEEEEecCCCceeEEEEecCCCcchh
Confidence 6799999999888654 23321 11 11111232 223433 677776 599999998732
Q ss_pred CCCCCCEEEEEecCCCC
Q 043413 109 HCTVGMKVGIDTLASTS 125 (185)
Q Consensus 109 HC~~GmKl~I~V~~~~~ 125 (185)
|-..|+-..+.|.....
T Consensus 123 q~~~GL~G~liV~~~~~ 139 (488)
T 3od3_A 123 QVAMGLAGLVVIEDDEI 139 (488)
T ss_dssp HHHTTCCEEEEEECHHH
T ss_pred hhhccceeEEEEcCccc
Confidence 34478998888876543
No 118
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}
Probab=24.43 E-value=47 Score=24.56 Aligned_cols=39 Identities=15% Similarity=0.354 Sum_probs=29.0
Q ss_pred eEEEEcCC--CCCCCCC-------C----CccccccCCeEecCCeeeeeecC
Q 043413 23 ANYTVGGP--NGGWDTA-------T----DLRTWATSQKFLVGDNLIFQYPS 61 (185)
Q Consensus 23 ~~~~VGg~--~~GW~~~-------~----~Y~~Was~~~f~vGDtLvF~y~~ 61 (185)
..++||+. -..|+.. . .|..|.....+..|..|.|||-.
T Consensus 24 ~v~vvGs~~~LG~W~p~~av~L~~~~~~~~~~~W~~~v~lp~~~~~eYKyvi 75 (131)
T 2z0b_A 24 VFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGVSVQYRYFK 75 (131)
T ss_dssp EEEEEESSGGGTTTCGGGCEECEECCTTCCSSEEEEEEEECTTCCEEEEEEE
T ss_pred EEEEEeCCCcCCCCCccccccccccccCCCCCeEEEEEEcCCCCcEEEEEEE
Confidence 45788872 1459841 2 67899998889899999999953
No 119
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=24.33 E-value=17 Score=26.98 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=14.6
Q ss_pred ccCCeEecCCeeeeeecCC
Q 043413 44 ATSQKFLVGDNLIFQYPSS 62 (185)
Q Consensus 44 as~~~f~vGDtLvF~y~~~ 62 (185)
...+.++.||.|+|.....
T Consensus 87 V~~~~L~~GD~~~F~~~~~ 105 (130)
T 1wid_A 87 VKEKNLRAGDVVSFSRSNG 105 (130)
T ss_dssp HHHTTCCTTCEEEEEECCS
T ss_pred HHHcCCCCCCEEEEEEecC
Confidence 3456788999999998754
No 120
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A {Myrothecium verrucaria} PDB: 2xll_A*
Probab=24.14 E-value=3.4e+02 Score=24.40 Aligned_cols=75 Identities=9% Similarity=0.034 Sum_probs=43.9
Q ss_pred CeEecCCeeeeeecCC----CcEEEE--c-CcCcccccCCCCccccCCCCc---EEecCC-CcceeEEcCCCCC----CC
Q 043413 47 QKFLVGDNLIFQYPSS----HDVTEV--S-KPDYDSCQTSNKIKSYTDGNT---VIPLSS-PGKRYFICGAPGH----CT 111 (185)
Q Consensus 47 ~~f~vGDtLvF~y~~~----H~Vv~V--s-~~~Yd~C~~s~~~~~~s~G~~---~v~L~~-~G~~YFiC~~~~H----C~ 111 (185)
+.++.||+|+.++.+. ++|..= . ....|.- ...+ ...|.+ .|+++. .|++||=|-..++ =.
T Consensus 71 I~~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~~DG~-~~~~---i~PG~~~~Y~f~~~~~~GT~WYH~H~~~~t~~q~~ 146 (534)
T 3abg_A 71 FQVPRGVETVVRFINNAEAPNSVHLHGSFSRAAFDGW-AEDI---TEPGSFKDYYYPNRQSARTLWYHDHAMHITAENAY 146 (534)
T ss_dssp EEEETTCCEEEEEEECSSSCBCEEEETCCCCTTTTTC-SSSC---BSSCSCCCEEECCCSSSCEEEEEECCTTCHHHHHH
T ss_pred EEEeCCcEEEEEEEECCCCCceEEECCCcCCCCCCCC-CCCC---CCCCCeEEEEEecCCcceeEEEecCccccchhhhh
Confidence 5688999999988654 333221 0 0111210 0011 223432 566666 5799999987442 23
Q ss_pred CCCEEEEEecCCCC
Q 043413 112 VGMKVGIDTLASTS 125 (185)
Q Consensus 112 ~GmKl~I~V~~~~~ 125 (185)
.||...+.|.....
T Consensus 147 ~Gl~G~liV~~~~~ 160 (534)
T 3abg_A 147 RGQAGLYMLTDPAE 160 (534)
T ss_dssp TBCEEEEEEECTTT
T ss_pred hcceEEEEEECCcc
Confidence 69999999987654
No 121
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=23.67 E-value=77 Score=26.62 Aligned_cols=34 Identities=24% Similarity=0.224 Sum_probs=27.2
Q ss_pred EEecCCCcceeEEcCCCCCCC------CCCEEEEEecCCC
Q 043413 91 VIPLSSPGKRYFICGAPGHCT------VGMKVGIDTLAST 124 (185)
Q Consensus 91 ~v~L~~~G~~YFiC~~~~HC~------~GmKl~I~V~~~~ 124 (185)
.|+.+.+|.++|.|-+..||. .||...|.+....
T Consensus 240 ~~~~~~pG~w~~hch~~~H~~~~~~~~~gm~a~l~~~g~~ 279 (339)
T 2zwn_A 240 IIEADNPGRFIFHDHVDTHVTAGGKHPGGPITVIEYDGVP 279 (339)
T ss_dssp EEECCSCSEEEEEECCGGGSCBTTBSSCSSEEEEEETTSC
T ss_pred EEEeCCCeeEEEEEechhhcccccccCCCcEEEEEECCCC
Confidence 567888999999999999963 5788888886543
No 122
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=23.45 E-value=22 Score=27.02 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=29.9
Q ss_pred CCCCCCCCccccccCCeEecCCeeeeeecC-----------C-CcEEEEcCcCcc
Q 043413 32 GGWDTATDLRTWATSQKFLVGDNLIFQYPS-----------S-HDVTEVSKPDYD 74 (185)
Q Consensus 32 ~GW~~~~~Y~~Was~~~f~vGDtLvF~y~~-----------~-H~Vv~Vs~~~Yd 74 (185)
.||. +.||.+..--+..++||.+.|-.+. . -.|.+|..+.|.
T Consensus 19 ~g~~-GVn~~arn~lr~mk~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~ 72 (145)
T 2hd9_A 19 HNVW-GVPKKHKNTLSRVKPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYV 72 (145)
T ss_dssp HCEE-EECGGGHHHHTTCCTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEE
T ss_pred cCcc-ccCHHHHHHHHhCCCCCEEEEEEccccccCCCCCCceEEEEEEEcCCcEe
Confidence 3565 4588888766789999999997652 2 456788556655
No 123
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=22.34 E-value=58 Score=23.17 Aligned_cols=33 Identities=12% Similarity=0.296 Sum_probs=24.4
Q ss_pred eEEEEcCCCCCCCCCCCccccc--cCCeEecCCeeeeee
Q 043413 23 ANYTVGGPNGGWDTATDLRTWA--TSQKFLVGDNLIFQY 59 (185)
Q Consensus 23 ~~~~VGg~~~GW~~~~~Y~~Wa--s~~~f~vGDtLvF~y 59 (185)
...++|| ..| ...++.|. ....|..||.|.++.
T Consensus 37 ~~~~l~D-eTG---~I~~t~W~~~~~~~~~~G~~V~i~n 71 (109)
T 2kbn_A 37 QVGLLGD-ETG---IIKFTIWKNAELPLLEQGESYLLRS 71 (109)
T ss_dssp EEEEEEC-TTC---CEEEEEEGGGCCCCCCTTCEEEEEE
T ss_pred EEEEEEC-CCC---eEEEEEECcccccccCCCCEEEEEE
Confidence 4578999 777 34577887 234799999999984
No 124
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=21.99 E-value=60 Score=21.99 Aligned_cols=45 Identities=24% Similarity=0.442 Sum_probs=26.5
Q ss_pred CCeEecCCeeeeeecCC-CcEEEEcCcCcccccCCCCc--cccCCCCcEEecC
Q 043413 46 SQKFLVGDNLIFQYPSS-HDVTEVSKPDYDSCQTSNKI--KSYTDGNTVIPLS 95 (185)
Q Consensus 46 ~~~f~vGDtLvF~y~~~-H~Vv~Vs~~~Yd~C~~s~~~--~~~s~G~~~v~L~ 95 (185)
..+|.+||++.=+| .+ +.-+++.-..++ ..+++ -.|.+| +..+|.
T Consensus 7 ~~~~~vgd~VmaRW-~Gd~~yYparI~Si~---s~~~~Y~V~fKdg-T~e~L~ 54 (66)
T 2l8d_A 7 NRKYADGEVVMGRW-PGSVLYYEVQVTSYD---DASHLYTVKYKDG-TELALK 54 (66)
T ss_dssp SSSSCSSCEEEEEC-TTSSCEEEEEEEEEE---TTTTEEEEEETTS-CEEEEE
T ss_pred ceEeecCCEEEEEc-CCCccceEEEEEEec---cCCceEEEEecCC-CEEeec
Confidence 36799999999999 55 555555333333 33433 345664 334443
No 125
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=21.65 E-value=71 Score=21.71 Aligned_cols=46 Identities=30% Similarity=0.424 Sum_probs=27.6
Q ss_pred CCeEecCCeeeeeecCCCcEEEEcCcCcccccCCCCc--cccCCCCcEEecC
Q 043413 46 SQKFLVGDNLIFQYPSSHDVTEVSKPDYDSCQTSNKI--KSYTDGNTVIPLS 95 (185)
Q Consensus 46 ~~~f~vGDtLvF~y~~~H~Vv~Vs~~~Yd~C~~s~~~--~~~s~G~~~v~L~ 95 (185)
..+|.+||++.=+|...+.-+++.-..++ ..+++ -.|.+| +..+|.
T Consensus 10 ~~~f~vgd~VmaRW~Gd~~yYparItSit---s~~~~Y~VkfKdg-T~e~L~ 57 (68)
T 2dig_A 10 SRKFADGEVVRGRWPGSSLYYEVEILSHD---STSQLYTVKYKDG-TELELK 57 (68)
T ss_dssp CCSSCSSCEEEEECTTTCCEEEEEEEEEE---TTTTEEEEECTTS-CEEEEE
T ss_pred ceEeecCCEEEEEccCCccceEEEEEEec---cCCceEEEEecCC-CEEEec
Confidence 36799999999999933555555333433 33443 346664 444554
No 126
>1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} SCOP: b.72.2.1
Probab=20.15 E-value=37 Score=20.70 Aligned_cols=16 Identities=13% Similarity=0.621 Sum_probs=13.2
Q ss_pred ccccCCeEecCCeeee
Q 043413 42 TWATSQKFLVGDNLIF 57 (185)
Q Consensus 42 ~Was~~~f~vGDtLvF 57 (185)
.|..+....+||.+.+
T Consensus 1 ~W~~~~~Y~~Gd~Vty 16 (45)
T 1ed7_A 1 AWQVNTAYTAGQLVTY 16 (45)
T ss_dssp CCCSSEEECTTCCEEE
T ss_pred CccCCceEcCCCEEEE
Confidence 3788888999999876
Done!