BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043414
(113 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ALG|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2ALG|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
Length = 92
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 51/88 (57%)
Query: 25 ITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRXXXXXXXXXXXRYPN 84
ITCGQV +SLA CIPY+ GG ACC+G++N+ ++ T D + P
Sbjct: 2 ITCGQVSSSLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPG 61
Query: 85 IKEDAASSLPQKCGVQMNIPISKTTNCA 112
+ + A++LP KCGV + IS +TNCA
Sbjct: 62 VNPNNAAALPGKCGVSIPYKISASTNCA 89
>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVB|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVC|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVC|B Chain B, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1BV2|A Chain A, Lipid Transfer Protein From Rice Seeds, Nmr, 14 Structures
pdb|1RZL|A Chain A, Rice Nonspecific Lipid Transfer Protein
Length = 91
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%)
Query: 25 ITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRXXXXXXXXXXXRYPN 84
ITCGQV++++ C+ Y G P AACC GV++LK+ TAD R
Sbjct: 1 ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKG 60
Query: 85 IKEDAASSLPQKCGVQMNIPISKTTNCAK 113
+ A+S+P KCGV + IS + +C++
Sbjct: 61 LNAGNAASIPSKCGVSVPYTISASIDCSR 89
>pdb|1SIY|A Chain A, Nmr Structure Of Mung Bean Non-Specific Lipid Transfer
Protein 1
Length = 91
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 46/87 (52%)
Query: 25 ITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRXXXXXXXXXXXRYPN 84
+TCGQV +LA CI +L GG +CC GVKN+ + + TAD R
Sbjct: 1 MTCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRG 60
Query: 85 IKEDAASSLPQKCGVQMNIPISKTTNC 111
I + A +LP KCGV + IS +TNC
Sbjct: 61 INPNNAEALPGKCGVNIPYKISTSTNC 87
>pdb|1BWO|A Chain A, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1BWO|B Chain B, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1GH1|A Chain A, Nmr Structures Of Wheat Nonspecific Lipid Transfer Protein
Length = 90
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%)
Query: 25 ITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRXXXXXXXXXXXRYPN 84
I CG VD+ + C+ Y+ G P CCDGVKNL + + +D + N
Sbjct: 1 IDCGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHN 60
Query: 85 IKEDAASSLPQKCGVQMNIPISKTTNCAK 113
+ ED A S+P KCGV + IS +C++
Sbjct: 61 LNEDNARSIPPKCGVNLPYTISLNIDCSR 89
>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Capric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK1|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Lauric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK2|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Myristic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK3|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Palmitoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK4|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Stearic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK5|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Oleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK6|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Alpha-Linolenic
Acid Revealed By High-Resolution X-Ray Crystallography
pdb|1FK7|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Ricinoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1AFH|A Chain A, Lipid Transfer Protein From Maize Seedlings, Nmr, 15
Structures
pdb|1MZL|A Chain A, Maize Nonspecific Lipid Transfer Protein
pdb|1MZM|A Chain A, Maize Nonspecific Lipid Transfer Protein Complexed With
Palmitate
Length = 93
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 24 AITCGQVDASLASCIPYLIA-GGNPDAACCDGVKNLKSITPATADGRXXXXXXXXXXXRY 82
AI+CGQV +++A CI Y G P A CC GV++L + TAD R
Sbjct: 1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60
Query: 83 PNIKEDAASSLPQKCGVQMNIPISKTTNCAK 113
+ A+S+P KCGV + IS +T+C++
Sbjct: 61 SGLNAGNAASIPSKCGVSIPYTISTSTDCSR 91
>pdb|1CZ2|A Chain A, Solution Structure Of Wheat Ns-Ltp Complexed With
Prostaglandin B2
Length = 90
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%)
Query: 27 CGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRXXXXXXXXXXXRYPNIK 86
CG VD+ + C+ Y+ G P CCDGVKNL + + +D + N+
Sbjct: 3 CGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLN 62
Query: 87 EDAASSLPQKCGVQMNIPISKTTNCAK 113
ED A S+P KCGV + IS +C++
Sbjct: 63 EDNARSIPPKCGVNLPYTISLNIDCSR 89
>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2
Length = 93
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 43/88 (48%)
Query: 24 AITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRXXXXXXXXXXXRYP 83
AI+CG V + L+ C+ YL G P CC GVK L + T D +
Sbjct: 1 AISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSIT 60
Query: 84 NIKEDAASSLPQKCGVQMNIPISKTTNC 111
+ + A++LP KCGV + IS TTNC
Sbjct: 61 KLNTNNAAALPGKCGVNIPYKISTTTNC 88
>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In
Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl
pdb|3GSH|A Chain A, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
pdb|3GSH|B Chain B, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
Length = 91
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%)
Query: 25 ITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRXXXXXXXXXXXRYPN 84
+ CGQVD+ + C+ Y+ G P CC+GV++L + ++ D + N
Sbjct: 1 LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHN 60
Query: 85 IKEDAASSLPQKCGVQMNIPISKTTNCAK 113
+ + A+S+P KC V + IS +C++
Sbjct: 61 LNLNNAASIPSKCNVNVPYTISPDIDCSR 89
>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10
Structures
pdb|1JTB|A Chain A, Lipid Transfer Protein Complexed With Palmitoyl Coenzyme
A, Nmr, 16 Structures
pdb|1LIP|A Chain A, Barley Lipid Transfer Protein (Nmr, 4 Structures)
Length = 91
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%)
Query: 25 ITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRXXXXXXXXXXXRYPN 84
+ CGQVD+ + C+ Y+ G P CC+GV++L + ++ D + N
Sbjct: 1 LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHN 60
Query: 85 IKEDAASSLPQKCGVQMNIPISKTTNCAK 113
+ + A+S+P KC V + IS +C++
Sbjct: 61 LNLNNAASIPSKCNVNVPYTISPDIDCSR 89
>pdb|1T12|A Chain A, Solution Structure Of A New Ltp1
Length = 91
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 24 AITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRXXXXXXXXXXXRYP 83
AITCGQV ++LA C+ YL G P CC GVK L + T D +
Sbjct: 1 AITCGQVTSNLAPCLAYLRNTG-PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAIS 59
Query: 84 NIKEDAASSLPQKCGVQMNIPISKTTNCAK 113
I A+ LP CGV + IS +T+C+K
Sbjct: 60 GINLGKAAGLPSTCGVNIPYKISPSTDCSK 89
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 18 IVTPGEAITCGQVDASLASCIPYLIAG 44
I++P E ++C Q PYLIAG
Sbjct: 258 ILSPQEVVSCSQYAQGCEGGFPYLIAG 284
>pdb|3TQW|A Chain A, Structure Of A Abc Transporter, Periplasmic
Substrate-Binding Protein From Coxiella Burnetii
pdb|3TQW|B Chain B, Structure Of A Abc Transporter, Periplasmic
Substrate-Binding Protein From Coxiella Burnetii
Length = 240
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 20 TPGEAITCGQVDASLASCIPYLIA 43
TP EA+ G VDA+ +PYL A
Sbjct: 43 TPNEALADGSVDANXFQHLPYLKA 66
>pdb|3KGX|A Chain A, Crystal Structure Of Putative Aminotransferase
(Aah25799.1) From Mus Musculus At 1.80 A Resolution
pdb|3KGX|B Chain B, Crystal Structure Of Putative Aminotransferase
(Aah25799.1) From Mus Musculus At 1.80 A Resolution
pdb|3KGW|A Chain A, Crystal Structure Of Putative Aminotransferase
(Aah25799.1) From Mus Musculus At 1.65 A Resolution
pdb|3KGW|B Chain B, Crystal Structure Of Putative Aminotransferase
(Aah25799.1) From Mus Musculus At 1.65 A Resolution
Length = 393
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 1 MKAAIVSMLVLVALMQMIVTPGEAITCGQVDASLASCIPYLI 42
M+AA ++ + + QMI PGE T +V+ LA P L+
Sbjct: 111 MRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLL 152
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor
Gly-Phe-Chn2
Length = 164
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 18 IVTPGEAITCGQVDASLASCIPYLIAG 44
I++P E ++C Q PYLIAG
Sbjct: 52 ILSPQEVVSCSQYAQGCEGGFPYLIAG 78
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|I Chain I, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|AA Chain a, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|II Chain i, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|A Chain A, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|I Chain I, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|AA Chain a, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|II Chain i, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 559
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 16 QMIVTPGEAITCGQVDASLAS-CIPYLIAGGNPDAACCD 53
+ ++ PG A+ C ++AS +P IAGGN AC D
Sbjct: 215 ESLLVPGYALNC-----TVASQAMPKRIAGGNVKIACLD 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,681,689
Number of Sequences: 62578
Number of extensions: 76837
Number of successful extensions: 165
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 142
Number of HSP's gapped (non-prelim): 16
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)