Query 043414
Match_columns 113
No_of_seqs 118 out of 808
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 04:49:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01960 nsLTP1 nsLTP1: Non-spe 99.9 5.1E-28 1.1E-32 155.6 4.8 88 25-112 1-89 (89)
2 cd04660 nsLTP_like nsLTP_like: 99.6 7E-16 1.5E-20 95.9 4.1 66 27-102 1-69 (73)
3 cd00010 AAI_LTSS AAI_LTSS: Alp 99.5 2.5E-14 5.4E-19 86.0 2.6 61 34-99 1-63 (63)
4 PF14368 LTP_2: Probable lipid 99.5 1.2E-14 2.5E-19 93.5 0.4 72 23-103 18-93 (96)
5 cd01959 nsLTP2 nsLTP2: Non-spe 99.4 3.4E-13 7.4E-18 82.5 4.1 58 33-102 5-64 (66)
6 smart00499 AAI Plant lipid tra 99.0 3.3E-10 7.2E-15 69.2 4.0 68 27-103 1-76 (79)
7 PF00234 Tryp_alpha_amyl: Prot 99.0 1.2E-11 2.6E-16 78.8 -4.6 67 32-111 13-90 (90)
8 cd01958 HPS_like HPS_like: Hyd 92.1 0.27 5.9E-06 31.4 3.7 70 27-102 4-80 (85)
9 PF14547 Hydrophob_seed: Hydro 91.6 0.088 1.9E-06 33.6 1.0 69 33-111 8-84 (85)
10 PF07172 GRP: Glycine rich pro 55.0 9.3 0.0002 24.7 1.7 11 1-11 1-11 (95)
11 PF08194 DIM: DIM protein; In 30.6 72 0.0016 17.0 2.5 14 1-14 1-14 (36)
12 PF05617 Prolamin_like: Prolam 24.2 64 0.0014 18.8 1.8 16 45-60 26-41 (70)
13 PRK13681 hypothetical protein; 23.2 94 0.002 16.4 2.0 17 1-17 1-17 (35)
14 PRK10533 putative lipoprotein; 23.0 84 0.0018 22.5 2.4 37 1-39 1-38 (171)
15 PF08094 Toxin_24: Conotoxin T 22.8 24 0.00053 18.1 -0.2 12 46-57 8-19 (33)
No 1
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.94 E-value=5.1e-28 Score=155.58 Aligned_cols=88 Identities=49% Similarity=0.969 Sum_probs=81.9
Q ss_pred CCchhhhccccCCHHHHhCCC-CCchhhhhhhhhhhccCCcccCCcccceeeccccccCCCCCHHHHhhhhhcCCCCCCC
Q 043414 25 ITCGQVDASLASCIPYLIAGG-NPDAACCDGVKNLKSITPATADGRAACECVKAAAARYPNIKEDAASSLPQKCGVQMNI 103 (113)
Q Consensus 25 ~~C~~~~~~L~~Cl~yl~~~~-~Ps~~CC~~v~~l~~~~~t~~~~~~~C~Clk~~~~~~~~in~~~a~~Lp~~Cgv~~p~ 103 (113)
++|.++...|.||++|++|++ .|+++||+++++|++.++++.|++.+|+|+++...++++||++|+.+||++||+++||
T Consensus 1 ~~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~~~ 80 (89)
T cd01960 1 ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSIPY 80 (89)
T ss_pred CCHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCCCC
Confidence 469999999999999999875 7899999999999999999999999999999877777569999999999999999999
Q ss_pred CCCCCCCCC
Q 043414 104 PISKTTNCA 112 (113)
Q Consensus 104 ~i~~~~dC~ 112 (113)
||++++||+
T Consensus 81 ~i~~~~dC~ 89 (89)
T cd01960 81 PISPSTDCS 89 (89)
T ss_pred CCCCCCCCC
Confidence 999999996
No 2
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.60 E-value=7e-16 Score=95.88 Aligned_cols=66 Identities=29% Similarity=0.600 Sum_probs=52.8
Q ss_pred chhhhccccCCHHHHhCCC---CCchhhhhhhhhhhccCCcccCCcccceeeccccccCCCCCHHHHhhhhhcCCCCCC
Q 043414 27 CGQVDASLASCIPYLIAGG---NPDAACCDGVKNLKSITPATADGRAACECVKAAAARYPNIKEDAASSLPQKCGVQMN 102 (113)
Q Consensus 27 C~~~~~~L~~Cl~yl~~~~---~Ps~~CC~~v~~l~~~~~t~~~~~~~C~Clk~~~~~~~~in~~~a~~Lp~~Cgv~~p 102 (113)
|+.....|.||++|+++++ .|++.||+++|++. + .|+|.+.....++.||.++|.+||++||+++|
T Consensus 1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~~--------~--~C~C~~~~~~~~~~i~~~~a~~Lp~~Cgv~~p 69 (73)
T cd04660 1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRAD--------L--PCLCRYKTSLVLQIIDPDKAVYLPAKCGLPLP 69 (73)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcCC--------c--CCEeeccCCCcccccCHHHHHHHHHHcCCCCC
Confidence 4544467999999999865 47789999999843 2 39998765545556999999999999999987
No 3
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.47 E-value=2.5e-14 Score=85.97 Aligned_cols=61 Identities=31% Similarity=0.758 Sum_probs=49.8
Q ss_pred ccCCHHHHhCCC-CCchhhhhhhhhhhccCCcccCCcccceeeccccccCCCC-CHHHHhhhhhcCCC
Q 043414 34 LASCIPYLIAGG-NPDAACCDGVKNLKSITPATADGRAACECVKAAAARYPNI-KEDAASSLPQKCGV 99 (113)
Q Consensus 34 L~~Cl~yl~~~~-~Ps~~CC~~v~~l~~~~~t~~~~~~~C~Clk~~~~~~~~i-n~~~a~~Lp~~Cgv 99 (113)
|.||++|++|++ .|+++||++++++++. +++++|.++++......++ |.+++.+||++||+
T Consensus 1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~-----~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGATAPPSDCCSGLKSVVKS-----DPKCLCAALNGPGASLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCCCCCChHHHHHHHHHHhc-----ChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence 579999999874 7889999999998753 5677788888765544344 79999999999996
No 4
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.45 E-value=1.2e-14 Score=93.50 Aligned_cols=72 Identities=31% Similarity=0.665 Sum_probs=45.6
Q ss_pred CCCCchhhhccccCC---HHHHhCCCCCchhhhhhhhhhhccCCcccCCcccceeecccc-ccCCCCCHHHHhhhhhcCC
Q 043414 23 EAITCGQVDASLASC---IPYLIAGGNPDAACCDGVKNLKSITPATADGRAACECVKAAA-ARYPNIKEDAASSLPQKCG 98 (113)
Q Consensus 23 ~~~~C~~~~~~L~~C---l~yl~~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~Clk~~~-~~~~~in~~~a~~Lp~~Cg 98 (113)
...+|.+ .|.|| +.|++++..|+++||+++|++.+ .+..++|+.+++.. ..+ +||.+|+.+||++||
T Consensus 18 ~~~~c~~---~l~~c~~~~~~~~~~~~Ps~~CC~~l~~~~~-----~~~~ClC~~~~~~~~~~~-~in~~~a~~Lp~~Cg 88 (96)
T PF14368_consen 18 CCCSCAN---SLLPCCPCLCYVTGGPAPSAACCSALKSVVQ-----ADPPCLCQLLNSPGAPGF-GINVTRALALPAACG 88 (96)
T ss_dssp BTTB-HC---CCCHH--HHHHHCC-----HHHHHHHCC---------HCCHHHCCCC-CCHCHH-CCTCHHHHHHHHHCT
T ss_pred CcchhHH---HHhccccchhccCCCCCCCHHHHHHHHHhcc-----CCCCCHHHhcCccccccC-CcCHHHHHHHHHHcC
Confidence 3456644 46666 78888767899999999999853 24556666666554 344 799999999999999
Q ss_pred CCCCC
Q 043414 99 VQMNI 103 (113)
Q Consensus 99 v~~p~ 103 (113)
++.|.
T Consensus 89 ~~~~~ 93 (96)
T PF14368_consen 89 VPVPP 93 (96)
T ss_dssp SS-S-
T ss_pred CCCCC
Confidence 99884
No 5
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.39 E-value=3.4e-13 Score=82.48 Aligned_cols=58 Identities=29% Similarity=0.735 Sum_probs=46.4
Q ss_pred cccCCHHHHhCCCCCchhhhhhhhhhhccCCcccCCccccee--eccccccCCCCCHHHHhhhhhcCCCCCC
Q 043414 33 SLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRAACEC--VKAAAARYPNIKEDAASSLPQKCGVQMN 102 (113)
Q Consensus 33 ~L~~Cl~yl~~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C--lk~~~~~~~~in~~~a~~Lp~~Cgv~~p 102 (113)
.|.+|++|++++..||++||+.+|+ +..|+| +++..... .||.++|.+||++||+++|
T Consensus 5 ~L~~C~~ai~~~~~Ps~~CC~~Lk~-----------~~~CLC~y~~~p~l~~-~i~~~~A~~l~~~Cgv~~P 64 (66)
T cd01959 5 QLSPCLPAILGGSPPSAACCAKLKE-----------QQSCLCQYAKNPSLKQ-YVNSPNARKVLAACGVPYP 64 (66)
T ss_pred hcccCHHHHhCCCCCCHHHHHHHhc-----------CCCCeeeeecCccHHh-hcCcHHHHHHHHHcCCCCC
Confidence 6999999999888899999999998 124666 44432222 5999999999999999986
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=99.02 E-value=3.3e-10 Score=69.23 Aligned_cols=68 Identities=40% Similarity=0.817 Sum_probs=51.4
Q ss_pred chhhhccccCCHHHHhCC--C-CCchhhhhhhhhhhccCCcccCCcccceeeccccccCC-C----CCHHHHhhhhhcCC
Q 043414 27 CGQVDASLASCIPYLIAG--G-NPDAACCDGVKNLKSITPATADGRAACECVKAAAARYP-N----IKEDAASSLPQKCG 98 (113)
Q Consensus 27 C~~~~~~L~~Cl~yl~~~--~-~Ps~~CC~~v~~l~~~~~t~~~~~~~C~Clk~~~~~~~-~----in~~~a~~Lp~~Cg 98 (113)
|..+...+.+|.+|++++ . .|+..||++++.+. ...|+|........+ . ++..++.+||+.||
T Consensus 1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~---------~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~ 71 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN---------SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACG 71 (79)
T ss_pred ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc---------ccCCcchhhhcccccccchhhhhHHHHHhhHHhcC
Confidence 556666778999999976 3 67789999999984 246888653322221 1 58999999999999
Q ss_pred CCCCC
Q 043414 99 VQMNI 103 (113)
Q Consensus 99 v~~p~ 103 (113)
+..++
T Consensus 72 ~~~~~ 76 (79)
T smart00499 72 VPPPY 76 (79)
T ss_pred CCCCC
Confidence 99885
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=98.95 E-value=1.2e-11 Score=78.82 Aligned_cols=67 Identities=30% Similarity=0.738 Sum_probs=50.5
Q ss_pred ccccCCHHHHhCCC-CCchhhhhhhhhhhccCCcccCCcccceeeccccccC----------CCCCHHHHhhhhhcCCCC
Q 043414 32 ASLASCIPYLIAGG-NPDAACCDGVKNLKSITPATADGRAACECVKAAAARY----------PNIKEDAASSLPQKCGVQ 100 (113)
Q Consensus 32 ~~L~~Cl~yl~~~~-~Ps~~CC~~v~~l~~~~~t~~~~~~~C~Clk~~~~~~----------~~in~~~a~~Lp~~Cgv~ 100 (113)
..+.+|.+|++++. .|+..||++|++|.. ++.|..++...... .+++..+|.+||+.||++
T Consensus 13 ~~l~~c~~~~~~~~~~~~~~CC~~L~~l~~--------~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~ 84 (90)
T PF00234_consen 13 VRLSPCLPYLQGGCQQPSQQCCQQLRQLDP--------QCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVS 84 (90)
T ss_dssp SHHHGGHHHHTTSSSHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSS
T ss_pred ccccccHHHHhcccccchHHHhHHHHHHhH--------HhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCC
Confidence 45899999999875 578899999999854 34444455433331 158899999999999999
Q ss_pred CCCCCCCCCCC
Q 043414 101 MNIPISKTTNC 111 (113)
Q Consensus 101 ~p~~i~~~~dC 111 (113)
+|+ +||
T Consensus 85 ~~~-----~~C 90 (90)
T PF00234_consen 85 PPY-----TDC 90 (90)
T ss_dssp SSS-----S-G
T ss_pred CCC-----CCC
Confidence 997 666
No 8
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=92.06 E-value=0.27 Score=31.36 Aligned_cols=70 Identities=26% Similarity=0.426 Sum_probs=42.3
Q ss_pred chhhhccccCCHHHHhC-----CCCCchhhhhhhhhhhccCCcccCCcccceeeccccccCC-CCCHH-HHhhhhhcCCC
Q 043414 27 CGQVDASLASCIPYLIA-----GGNPDAACCDGVKNLKSITPATADGRAACECVKAAAARYP-NIKED-AASSLPQKCGV 99 (113)
Q Consensus 27 C~~~~~~L~~Cl~yl~~-----~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~Clk~~~~~~~-~in~~-~a~~Lp~~Cgv 99 (113)
|-.-..+|.-|..-+.. +.+|..+||+-++.+.+. --+.|+|-.-.++.++ ++|.+ +..-|-..||-
T Consensus 4 CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dl------dAA~CLCtaikan~lgi~~~~pv~l~llln~CGk 77 (85)
T cd01958 4 CPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADL------DAAVCLCTAIKANILGISINIPVALSLLLNSCGR 77 (85)
T ss_pred CCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhh------heeeeeeeeeeccccCcccccChhHHHHHHHHcC
Confidence 44333457778777743 124557999999998753 1368999533233332 33344 34556678999
Q ss_pred CCC
Q 043414 100 QMN 102 (113)
Q Consensus 100 ~~p 102 (113)
..|
T Consensus 78 ~~P 80 (85)
T cd01958 78 NVP 80 (85)
T ss_pred cCC
Confidence 988
No 9
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=91.64 E-value=0.088 Score=33.60 Aligned_cols=69 Identities=28% Similarity=0.523 Sum_probs=43.5
Q ss_pred cccCCHHHHhC-----CCCCchhhhhhhhhhhccCCcccCCcccceee--ccccccCCCCCHH-HHhhhhhcCCCCCCCC
Q 043414 33 SLASCIPYLIA-----GGNPDAACCDGVKNLKSITPATADGRAACECV--KAAAARYPNIKED-AASSLPQKCGVQMNIP 104 (113)
Q Consensus 33 ~L~~Cl~yl~~-----~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~Cl--k~~~~~~~~in~~-~a~~Lp~~Cgv~~p~~ 104 (113)
+|.-|...+.- +.++..+||+-++.+.+. --+.|+|- |...-.+-++|.+ .+..|-..||...|
T Consensus 8 kLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~------~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p-- 79 (85)
T PF14547_consen 8 KLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADL------DAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVP-- 79 (85)
T ss_pred hhhhhhhhhhhhccccCCCCCCCcChHHhCcccc------hHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCc--
Confidence 67788888721 123557999999998753 23679994 4322221123333 45677888999988
Q ss_pred CCCCCCC
Q 043414 105 ISKTTNC 111 (113)
Q Consensus 105 i~~~~dC 111 (113)
++++|
T Consensus 80 --~gf~C 84 (85)
T PF14547_consen 80 --SGFTC 84 (85)
T ss_pred --CCCcC
Confidence 66666
No 10
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=55.01 E-value=9.3 Score=24.69 Aligned_cols=11 Identities=27% Similarity=0.283 Sum_probs=5.6
Q ss_pred CchhHHHHHHH
Q 043414 1 MKAAIVSMLVL 11 (113)
Q Consensus 1 M~~~~~~~~~l 11 (113)
|+...++++.|
T Consensus 1 MaSK~~llL~l 11 (95)
T PF07172_consen 1 MASKAFLLLGL 11 (95)
T ss_pred CchhHHHHHHH
Confidence 77544444433
No 11
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=30.60 E-value=72 Score=17.03 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=8.2
Q ss_pred CchhHHHHHHHHHH
Q 043414 1 MKAAIVSMLVLVAL 14 (113)
Q Consensus 1 M~~~~~~~~~l~~~ 14 (113)
||...++++++++.
T Consensus 1 Mk~l~~a~~l~lLa 14 (36)
T PF08194_consen 1 MKCLSLAFALLLLA 14 (36)
T ss_pred CceeHHHHHHHHHH
Confidence 77777655544444
No 12
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=24.15 E-value=64 Score=18.84 Aligned_cols=16 Identities=19% Similarity=0.646 Sum_probs=13.1
Q ss_pred CCCchhhhhhhhhhhc
Q 043414 45 GNPDAACCDGVKNLKS 60 (113)
Q Consensus 45 ~~Ps~~CC~~v~~l~~ 60 (113)
...+++||..+..+.+
T Consensus 26 ~~i~~~CC~~i~~~g~ 41 (70)
T PF05617_consen 26 KNIGPECCKAINKMGK 41 (70)
T ss_pred CCCChHHHHHHHHHhH
Confidence 3688999999988764
No 13
>PRK13681 hypothetical protein; Provisional
Probab=23.20 E-value=94 Score=16.45 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=11.7
Q ss_pred CchhHHHHHHHHHHHHh
Q 043414 1 MKAAIVSMLVLVALMQM 17 (113)
Q Consensus 1 M~~~~~~~~~l~~~~~~ 17 (113)
|+.+|+.++.+++++..
T Consensus 1 M~~~K~~~i~lfalmAi 17 (35)
T PRK13681 1 MRIAKIGVIALFLLMAI 17 (35)
T ss_pred CcHHHHHHHHHHHHHHh
Confidence 78888877766655543
No 14
>PRK10533 putative lipoprotein; Provisional
Probab=22.96 E-value=84 Score=22.51 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=21.1
Q ss_pred CchhHHHHHHHHHHHHhh-cCCCCCCCchhhhccccCCHH
Q 043414 1 MKAAIVSMLVLVALMQMI-VTPGEAITCGQVDASLASCIP 39 (113)
Q Consensus 1 M~~~~~~~~~l~~~~~~~-~~a~~~~~C~~~~~~L~~Cl~ 39 (113)
||-+.|++++=+++++.+ .+.+.+. -++.+...||.+
T Consensus 1 mk~~~~a~~~p~alllsacttv~pa~--kd~g~r~~~cv~ 38 (171)
T PRK10533 1 MRYSKLALLIPCALLLSACTTVTPAY--KDNGSRSGPCVE 38 (171)
T ss_pred CCccchHHHHHHHHHHhHcccccccc--ccCCCccccCcC
Confidence 888887776665555543 2333222 344456777854
No 15
>PF08094 Toxin_24: Conotoxin TVIIA/GS family; InterPro: IPR012629 This family consists of conotoxins isolated from the venom of cone snail Conus tulipa and Conus geographus. Conotoxin TVIIA, isolated from Conus tulipa displays little sequence homology with other well-characterised pharmacological classes of peptides, but displays similarity with conotoxin GS, a peptide from Conus geographus. Both these peptides block skeletal muscle sodium channels and also share several biochemical features and represent a distinct subgroup of the four-loop conotoxins [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1AG7_A 1EYO_A.
Probab=22.77 E-value=24 Score=18.06 Aligned_cols=12 Identities=25% Similarity=0.719 Sum_probs=7.9
Q ss_pred CCchhhhhhhhh
Q 043414 46 NPDAACCDGVKN 57 (113)
Q Consensus 46 ~Ps~~CC~~v~~ 57 (113)
.=|+.||.|++-
T Consensus 8 rcpp~ccmgl~c 19 (33)
T PF08094_consen 8 RCPPQCCMGLRC 19 (33)
T ss_dssp SSSSSB-TTEEE
T ss_pred CCCchheeeeee
Confidence 345689999875
Done!