BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043420
(702 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/624 (55%), Positives = 436/624 (69%), Gaps = 13/624 (2%)
Query: 73 TTRSWDFMGFSEHV-KRATTESDIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSS 131
TTRSWDF+GF V +R+ ES+I+VG+LDTGIWPES SF DE F PPP KWKG+C+TS+
Sbjct: 1 TTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSN 60
Query: 132 NFTCNNKIIGAKFYRSDKKFSPFDFKSPRDSEGHGTHTSSTAAGGLVSKASLFGIGFGTA 191
NF CN KIIGA+ Y + SP D PRD+ GHGTHT+STAAGGLVS+A+L+G+G GTA
Sbjct: 61 NFRCNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTA 120
Query: 192 IGGVPSARIAVYKICWFDGCXXXXXXXXXXXXXXXGVDIISISVGSFSAVNYFEDTIAIG 251
GGVP ARIA YK+CW DGC GVDIIS+SVG + +YF D IAIG
Sbjct: 121 RGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIG 180
Query: 252 SFHAMKKGILTSNSAGNSGPDAASLANVAPWTLSVAASTVDRKFVTRVKLGNGEVYEGIS 311
SFHA+++GILTSNSAGN GP+ + A+++PW LSVAAST+DRKFVT+V++GNG+ ++G+S
Sbjct: 181 SFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVS 240
Query: 312 INTIDYKGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDG--- 368
INT D + +PL+ G D PN G+ S SRFC+ S++ L++GKIV+C E + G
Sbjct: 241 INTFD--NQYYPLVSGRDIPNT--GFDKSTSRFCTDKSVNPNLLKGKIVVC-EASFGPHE 295
Query: 369 FGAATARAVGSVMQGNDDRDVAYSFPLPNSYLDLYDGSKIASYLNSTSIPTATILKSTAE 428
F + A G +M N RD A S+PLP+S LD D Y+ S P ATI KST
Sbjct: 296 FFKSLDGAAGVLMTSN-TRDYADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTI 354
Query: 429 KNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISG 488
N APVV SFSSRGPN T D++KPD++ PGV+ILA+W +P G R + FNIISG
Sbjct: 355 LNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSV-APVGGIRRNTLFNIISG 413
Query: 489 TSMSCPHATAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLNPSMA 548
TSMSCPH T A YVK++ P+WSPAAIKSALMTTA+PM+ N AEFAYGSGH+NP A
Sbjct: 414 TSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAEFAYGSGHVNPLKA 473
Query: 549 VNPGLVYDAGELDYVKFLCGQGYSDKNLSLVTGDNRSCSNSTNATVWDLNYPSFALSTKP 608
V PGLVYDA E DYVKFLCGQGY+ + + +TGD +C++ VWDLNYPSF LS P
Sbjct: 474 VRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSP 533
Query: 609 GNNTTQVFHRTVTNVGSAVSTYRAVVYTRPGLMIKVQPSVLYFKSLYQKQSFVVTVTANV 668
Q F+RT+T+V STYRA++ GL I V P+VL F L ++SF +TV ++
Sbjct: 534 SQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSI 593
Query: 669 GKSVNMISASLVWDDGVHHVRSPV 692
V +SASLVW DGVH+VRSP+
Sbjct: 594 KGFV--VSASLVWSDGVHYVRSPI 615
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 335 bits (859), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 239/637 (37%), Positives = 340/637 (53%), Gaps = 57/637 (8%)
Query: 94 DIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFT---CNNKIIGAKFYR---- 146
D+IV +LD+GIWPES SF D+ PK+WKG C+ + F CN K+IGA ++
Sbjct: 25 DVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIGANYFNKGIL 84
Query: 147 SDKKFSPFDFKSPRDSEGHGTHTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKIC 206
++ S RD++GHGTH +S AG S FG GTA G P AR+AVYK
Sbjct: 85 ANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFS 144
Query: 207 WFDGCXXXXXXXXXXXXXXXGVDIISISVGSFSAVNYFEDTIAIGSFHAMKKGILTSNSA 266
+ +G GVD+ISIS G + + +ED I+I SF AM KG+L S SA
Sbjct: 145 FNEGTFTSDLIAAMDQAVADGVDMISISYG-YRFIPLYEDAISIASFGAMMKGVLVSASA 203
Query: 267 GNSGPDAASLANVAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISINTIDYKGKMFPLIY 326
GN GP SL N +PW L VA+ DR F + LGNG G S+ + P+IY
Sbjct: 204 GNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIY 263
Query: 327 GGDAPNRTGGYQGSNSRFCSLGSLDEKLVQ-----GKIVLCD---ELNDGFGAATARAVG 378
N+T S S +E L Q IV+CD + +D T +
Sbjct: 264 -----NKT----------LSDCSSEELLSQVENPENTIVICDDNGDFSDQMRIITRARLK 308
Query: 379 SVMQGNDDRDV--AYSFPLPNSYLDLYDGSKIASYLNSTSIPTATI-LKSTAEKNEFAPV 435
+ + ++D V + +FP P ++ +G ++ +Y+ ++ PTATI + T + APV
Sbjct: 309 AAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPV 368
Query: 436 VASFSSRGPNPITNDILKPDLTAPGVDILASWTQ---ASSPSEGDPRISPFNIISGTSMS 492
VA+ S+RGP+ I KPD+ APGV ILA++ A+S + + + SGTSM+
Sbjct: 369 VAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMA 428
Query: 493 CPHATAAAAYVKSFYPSWSPAAIKSALMTTATPM---------SVEANSDAEFAYGSGHL 543
PHA AA +K+ +P WSP+AI+SA+MTTA P+ S + G+GH+
Sbjct: 429 APHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDSDNNKAATPLDMGAGHV 488
Query: 544 NPSMAVNPGLVYDAGELDYVKFLCGQGYSDKNLSLVTGDNRS--CSNSTNATVWDLNYPS 601
+P+ A++PGLVYDA DYV LC ++++ + + S CSN + DLNYPS
Sbjct: 489 DPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSNPSA----DLNYPS 544
Query: 602 F-ALSTKPGNNT--TQVFHRTVTNVGSAVSTYRAVVYTRPGLMIKVQPSVLYFKSLYQKQ 658
F AL + GN T Q F RTVTNVG +TY+A + I V P +L FK+ +KQ
Sbjct: 545 FIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQ 604
Query: 659 SFVVTV--TANVGKSVNMISASLVWDDGVHHVRSPVV 693
S+ +T+ + G+S N+ S + V +G H VRSP+V
Sbjct: 605 SYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIV 641
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 65/110 (59%), Gaps = 6/110 (5%)
Query: 435 VVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCP 494
V+ FSSRGP ++ LKP++ APG I+A+ +AS S G P + GT+M+ P
Sbjct: 308 VITDFSSRGPT--ADNRLKPEVVAPGNWIIAA--RASGTSMGQPINDYYTAAPGTAMATP 363
Query: 495 HATAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLN 544
H AA + +PSW+P +K+AL+ TA V+ + A+ AYG+G +N
Sbjct: 364 HVAGIAALLLQAHPSWTPDKVKTALIETAD--IVKPDEIADIAYGAGRVN 411
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 27/148 (18%)
Query: 158 SPRDSEGHGTHTSSTAAG----------GLVSKASLFGIGFGTAIGGVPSARIA--VYKI 205
+P D GHGTH +S AAG G+ A L GI + G S I+ + +
Sbjct: 173 TPYDDNGHGTHVASIAAGTGAASNGKYKGMAPGAKLVGI---KVLNGQGSGSISDIINGV 229
Query: 206 CWFDGCXXXXXXXXXXXXXXXGVDIISISVGSFSAVNYFEDTIAIGSFHAMKKGILTSNS 265
W G+ +I++S+GS + + D+++ +A G++ +
Sbjct: 230 DW-----------AVQNKDKYGIKVINLSLGSSQSSD-GTDSLSQAVNNAWDAGLVVVVA 277
Query: 266 AGNSGPDAASLANVAPWTLSVAASTVDR 293
AGNSGP+ ++ + A + + VD+
Sbjct: 278 AGNSGPNKYTVGSPAAASKVITVGAVDK 305
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 105/421 (24%), Positives = 169/421 (40%), Gaps = 91/421 (21%)
Query: 155 DFKSPRDSEGHGTHTSSTAAGGLVSKASL-FGIGFGTAIGGVPSARIAVYKICWFDGCX- 212
D K+ D E HGTH S +G S+ + + G +P A++ + ++ +G
Sbjct: 88 DGKTAVDQE-HGTHVSGILSGNAPSETKEPYRLE-----GAMPEAQLLLMRVEIVNGLAD 141
Query: 213 -XXXXXXXXXXXXXXGVDIISISVGSFSAVNY--FEDTIAIGSFHAMKKGILTSNSAGNS 269
G +I++S G+ +A+ Y D +A KG+ SAGN
Sbjct: 142 YARNYAQAIRDAVNLGAKVINMSFGN-AALAYANLPDETKKAFDYAKSKGVSIVTSAGND 200
Query: 270 ----GPDAASLAN-----------VAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISINT 314
G LA+ A TL+VA+ + D++ E ++ T
Sbjct: 201 SSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLT-----------ETATVKT 249
Query: 315 IDYKGKMFPLIYGGD-APNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGF---- 369
D++ K P++ PN+ Y +N + D K V+GKI L + + F
Sbjct: 250 DDHQAKEMPVLSTNRFEPNKAYDYAYANR---GMKEDDFKDVKGKIALIERGDIDFKDKI 306
Query: 370 -GAATARAVGSVMQGNDDRDVAYSFP----LPNSYLD------LYDGSKIASYLNSTS-- 416
A A AVG ++ N D+ P +P +++ L D SK N+T
Sbjct: 307 ANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNSKKTITFNATPKV 366
Query: 417 IPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEG 476
+PTA+ K ++ FSS G N +KPD+ APG DIL+S
Sbjct: 367 LPTASDTK-----------LSRFSSWGLTADGN--IKPDIAAPGQDILSSVAN------- 406
Query: 477 DPRISPFNIISGTSMSCPHATAAAAYVK----SFYPSWSPAA----IKSALMTTATPMSV 528
+ + +SGTSMS P ++ + YP +P+ K LM++AT +
Sbjct: 407 ----NKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYD 462
Query: 529 E 529
E
Sbjct: 463 E 463
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 29/127 (22%)
Query: 418 PTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGD 477
P+ + + N+ AP FSS GP + D+ APGV I ++
Sbjct: 163 PSVIAVGAVDSSNQRAP----FSSVGP--------ELDVMAPGVSICSTLPGGK------ 204
Query: 478 PRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFA 537
+ +SGTSM+ PH AAA + S +P+W+ ++S+L TAT + F
Sbjct: 205 -----YGALSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTATKLG------DSFY 253
Query: 538 YGSGHLN 544
YG G +N
Sbjct: 254 YGKGLIN 260
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 17/94 (18%)
Query: 455 DLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAA 514
D+ APGV++ Q++ P S + ++GTSM+ PH AAA VK PSWS
Sbjct: 191 DIVAPGVNV-----QSTYPG------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQ 239
Query: 515 IKSALMTTATPMSVEANSDAEFAYGSGHLNPSMA 548
I++ L TAT + + YGSG +N A
Sbjct: 240 IRNHLKNTATSL------GSTNLYGSGLVNAEAA 267
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 17/94 (18%)
Query: 455 DLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAA 514
D+ APGV++ Q++ P S + ++GTSM+ PH AAA VK PSWS
Sbjct: 191 DIVAPGVNV-----QSTYPG------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQ 239
Query: 515 IKSALMTTATPMSVEANSDAEFAYGSGHLNPSMA 548
I++ L TAT + + YGSG +N A
Sbjct: 240 IRNHLKNTATSL------GSTNLYGSGLVNAEAA 267
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 17/150 (11%)
Query: 146 RSDKKFSPFDFKSPRDSEGHGTHTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKI 205
R F P + S +D GHGTH + T A L + + G+ PSA + K+
Sbjct: 44 RGGASFVPGE-PSTQDGNGHGTHVAGTIA-ALNNSIGVLGV--------APSAELYAVKV 93
Query: 206 CWFDGCXXXXXXXXXXX-XXXXGVDIISISVGSFSAVNYFEDTIAIGSFHAMKKGILTSN 264
DG G+ + ++S+GS S E + A +G+L
Sbjct: 94 LGADGRGAISSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVA 149
Query: 265 SAGNSGPDAASLANVAPWTLSVAASTVDRK 294
++GNSG A+S++ A + ++A D+
Sbjct: 150 ASGNSG--ASSISYPARYANAMAVGATDQN 177
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 17/94 (18%)
Query: 455 DLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAA 514
D+ APGV++ Q++ P S + ++GTSM+ PH AAA VK PSWS
Sbjct: 191 DIVAPGVNV-----QSTYPG------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQ 239
Query: 515 IKSALMTTATPMSVEANSDAEFAYGSGHLNPSMA 548
I++ L TAT + + YGSG +N A
Sbjct: 240 IRNHLKNTATSL------GSTNLYGSGLVNAEAA 267
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 17/94 (18%)
Query: 455 DLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAA 514
D+ APGV++ Q++ P S + ++GTSM+ PH AAA VK PSWS
Sbjct: 191 DIVAPGVNV-----QSTYPG------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQ 239
Query: 515 IKSALMTTATPMSVEANSDAEFAYGSGHLNPSMA 548
I++ L TAT + + YGSG +N A
Sbjct: 240 IRNHLKNTATSL------GSTNLYGSGLVNAEAA 267
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 17/94 (18%)
Query: 455 DLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAA 514
D+ APGV++ Q++ P S + ++GTSM+ PH AAA VK PSWS
Sbjct: 191 DIVAPGVNV-----QSTYPG------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQ 239
Query: 515 IKSALMTTATPMSVEANSDAEFAYGSGHLNPSMA 548
I++ L TAT + + YGSG +N A
Sbjct: 240 IRNHLKNTATSL------GSTNLYGSGLVNAEAA 267
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 25/108 (23%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS GP + D+ APGV I Q++ P + +GTSM+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-----QSTLPGN------KYGAYNGTSMASPHV 227
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLN 544
AAA + S +P+W+ ++S+L T T + F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLQNTTTKLG------DSFYYGKGLIN 269
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 25/108 (23%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS GP + D+ APGV I Q++ P + +GTSM+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-----QSTLPGN------KYGAYNGTSMASPHV 227
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLN 544
AAA + S +P+W+ ++S+L T T + F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLQNTTTKLG------DSFYYGKGLIN 269
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 29/127 (22%)
Query: 418 PTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGD 477
P+ + + N+ AP FSS GP + D+ APGV I ++
Sbjct: 163 PSVIAVGAVDSSNQRAP----FSSVGP--------ELDVMAPGVSICSTLPGGK------ 204
Query: 478 PRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFA 537
+ +SGT+M+ PH AAA + S +P+W+ ++S+L TAT + F
Sbjct: 205 -----YGALSGTAMASPHVAGAAALILSKHPNWTNTQVRSSLENTATKLG------DSFY 253
Query: 538 YGSGHLN 544
YG G +N
Sbjct: 254 YGKGLIN 260
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 52/108 (48%), Gaps = 25/108 (23%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS GP + D+ APGV I Q++ P + SGTSM+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-----QSTLPGN------KYGAKSGTSMASPHV 227
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLN 544
AAA + S +P+W+ ++S+L T T + F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKLG------DSFYYGKGLIN 269
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 20/120 (16%)
Query: 435 VVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCP 494
+ ASFS+ G + DL APG DIL++ + P ++ ++GTSM+ P
Sbjct: 233 IRASFSNYG--------VDVDLAAPGQDILSTVDSGTRR----PVSDAYSFMAGTSMATP 280
Query: 495 HATAAAAYV----KSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLNPSMAVN 550
H + AA V S + +PA +K L++T +P N + A GSG ++ AVN
Sbjct: 281 HVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPF----NGRLDRALGSGIVDAEAAVN 336
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 20/120 (16%)
Query: 435 VVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCP 494
+ ASFS+ G + DL APG DIL++ + P ++ ++GTSM+ P
Sbjct: 233 IRASFSNYG--------VDVDLAAPGQDILSTVDSGTRR----PVSDAYSFMAGTSMATP 280
Query: 495 HATAAAAYV----KSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLNPSMAVN 550
H + AA V S + +PA +K L++T +P N + A GSG ++ AVN
Sbjct: 281 HVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPF----NGRLDRALGSGIVDAEAAVN 336
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 25/108 (23%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS GP + D+ APGV I Q++ P + +GTSM+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-----QSTLPGN------KYGAYNGTSMASPHV 227
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLN 544
AAA + S +P+W+ ++S+L T T + F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKLG------DSFYYGKGLIN 269
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 20/120 (16%)
Query: 435 VVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCP 494
+ ASFS+ G + DL APG DIL++ + P ++ ++GTSM+ P
Sbjct: 233 IRASFSNYG--------VDVDLAAPGQDILSTVDSGTRR----PVSDAYSFMAGTSMATP 280
Query: 495 HATAAAAYV----KSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLNPSMAVN 550
H + AA V S + +PA +K L++T +P N + A GSG ++ AVN
Sbjct: 281 HVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPF----NGRLDRALGSGIVDAEAAVN 336
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 25/108 (23%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS GP + D+ APGV I Q++ P + +GTSM+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-----QSTLPGN------KYGAYNGTSMASPHV 227
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLN 544
AAA + S +P+W+ ++S+L T T + F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKLG------DSFYYGKGLIN 269
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 25/108 (23%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS GP + D+ APGV I Q++ P + +GTSM+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-----QSTLPGN------KYGAYNGTSMASPHV 227
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLN 544
AAA + S +P+W+ ++S+L T T + F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKLG------DSFYYGKGLIN 269
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 17/94 (18%)
Query: 455 DLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAA 514
D+ APGV++ Q++ P S + ++GT M+ PH AAA VK PSWS
Sbjct: 191 DIVAPGVNV-----QSTYPG------STYASLNGTXMATPHVAGAAALVKQKNPSWSNVQ 239
Query: 515 IKSALMTTATPMSVEANSDAEFAYGSGHLNPSMA 548
I++ L TAT + + YGSG +N A
Sbjct: 240 IRNHLKNTATSL------GSTNLYGSGLVNAEAA 267
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 25/108 (23%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS GP + D+ APGV I Q++ P + SGT M+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-----QSTLPGN------KYGAYSGTXMASPHV 227
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLN 544
AAA + S +P+W+ ++S+L T T + F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKLG------DSFYYGKGLIN 269
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 25/108 (23%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS GP + D+ APGV I ++ + + SGTSM+ PH
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICSTLPG-----------NKYGAKSGTSMASPHV 218
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLN 544
AAA + S +P+W+ ++S+L T T + NS F YG G +N
Sbjct: 219 AGAAALILSKHPNWTNTQVRSSLENTTTKL---GNS---FYYGKGLIN 260
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 25/108 (23%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS GP + D+ APGV I Q++ P + SGT M+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-----QSTLPGN------KYGAYSGTXMASPHV 227
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLN 544
AAA + S +P+W+ ++S+L T T + F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKLG------DSFYYGKGLIN 269
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 17/94 (18%)
Query: 455 DLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAA 514
D+ APGV++ Q++ P S + ++GT M+ PH AAA VK PSWS
Sbjct: 191 DIVAPGVNV-----QSTYPG------STYASLNGTXMATPHVAGAAALVKQKNPSWSNVQ 239
Query: 515 IKSALMTTATPMSVEANSDAEFAYGSGHLNPSMA 548
I++ L TAT + + YGSG +N A
Sbjct: 240 IRNHLKNTATSL------GSTNLYGSGLVNAEAA 267
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 25/108 (23%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS GP + D+ APGV I Q++ P + SGT M+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-----QSTLPGN------KYGAKSGTXMASPHV 227
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLN 544
AAA + S +P+W+ ++S+L T T + F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKLG------DSFYYGKGLIN 269
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 25/108 (23%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS GP + D+ APGV I ++ + + SGTSM+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIXSTLPG-----------NKYGAYSGTSMASPHV 227
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLN 544
AAA + S +P+W+ ++S+L T T + F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKLG------DSFYYGKGLIN 269
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 17/94 (18%)
Query: 455 DLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAA 514
D+ APGV++ Q++ P S + ++GT M+ PH AAA VK PSWS
Sbjct: 191 DIVAPGVNV-----QSTYPG------STYASLNGTXMATPHVAGAAALVKQKNPSWSNVQ 239
Query: 515 IKSALMTTATPMSVEANSDAEFAYGSGHLNPSMA 548
I++ L TAT + + YGSG +N A
Sbjct: 240 IRNHLKNTATSLG------STNLYGSGLVNAEAA 267
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 15/126 (11%)
Query: 146 RSDKKFSPFDFKSPRDSEGHGTHTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKI 205
R F P + S +D GHGTH + T A L + + G+ PSA + K+
Sbjct: 44 RGGASFVPGE-PSTQDGNGHGTHVAGTIA-ALDNSIGVLGV--------APSAELYAVKV 93
Query: 206 CWFDGCXXXXXXXXXXX-XXXXGVDIISISVGSFSAVNYFEDTIAIGSFHAMKKGILTSN 264
G G+ + ++S+GS S E + A +G+L
Sbjct: 94 LGASGSGAISSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVA 149
Query: 265 SAGNSG 270
++GN G
Sbjct: 150 ASGNEG 155
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 25/108 (23%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS GP + D+ APGV I ++ + + SGTSM+ PH
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICSTLPG-----------NKYGAKSGTSMASPHV 218
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLN 544
AAA + S +P+W+ ++S+L T T + F YG G +N
Sbjct: 219 AGAAALILSKHPNWTNTQVRSSLENTTTKLG------DSFYYGKGLIN 260
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 17/94 (18%)
Query: 455 DLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAA 514
D+ APGV++ Q++ P S + ++GT M+ PH AAA VK PSWS
Sbjct: 191 DIVAPGVNV-----QSTYPG------STYASLNGTXMATPHVAGAAALVKQKNPSWSNVQ 239
Query: 515 IKSALMTTATPMSVEANSDAEFAYGSGHLNPSMA 548
I++ L TAT + + YGSG +N A
Sbjct: 240 IRNHLKNTATSL------GSTNLYGSGLVNAEAA 267
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 17/150 (11%)
Query: 146 RSDKKFSPFDFKSPRDSEGHGTHTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKI 205
R F P + S +D GHGTH + T A L + + G+ PSA + K+
Sbjct: 44 RGGASFVPGE-PSTQDGNGHGTHVAGTIA-ALDNSIGVLGV--------APSAELYAVKV 93
Query: 206 CWFDGCXXXXXXXXXXX-XXXXGVDIISISVGSFSAVNYFEDTIAIGSFHAMKKGILTSN 264
G G+ + ++S+GS S E + A +G+L
Sbjct: 94 LGASGSGAISSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVA 149
Query: 265 SAGNSGPDAASLANVAPWTLSVAASTVDRK 294
++GNSG A S++ A + ++A D+
Sbjct: 150 ASGNSG--AGSISYPARYANAMAVGATDQN 177
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 17/94 (18%)
Query: 455 DLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAA 514
D+ APGV++ Q++ P S + ++GTSM+ PH AA VK PSWS
Sbjct: 191 DIVAPGVNV-----QSTYPG------STYASLNGTSMATPHVAGVAALVKQKNPSWSNVQ 239
Query: 515 IKSALMTTATPMSVEANSDAEFAYGSGHLNPSMA 548
I++ L TAT + N++ YGSG +N A
Sbjct: 240 IRNHLKNTATGL---GNTN---LYGSGLVNAEAA 267
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 25/108 (23%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS GP + D+ APGV I ++ + + SGTSM+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSICSTLPG-----------NKYGAKSGTSMASPHV 227
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLN 544
AAA + S +P+W+ ++S+L T T + F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKLG------DSFYYGKGLIN 269
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 25/108 (23%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS GP + D+ APGV I ++ + + SGTSM+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSICSTLPG-----------NKYGAKSGTSMASPHV 227
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLN 544
AAA + S +P+W+ ++S+L T T + F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKLG------DSFYYGKGLIN 269
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 25/108 (23%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS GP + D+ APGV I+++ + + SGT+M+ PH
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSIVSTLPG-----------NKYGAKSGTAMASPHV 218
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLN 544
AAA + S +P+W+ ++S+L T T + F YG G +N
Sbjct: 219 AGAAALILSKHPNWTNTQVRSSLENTTTKLG------DSFYYGKGLIN 260
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 25/108 (23%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS GP + D+ APGV I+++ + + SGT+M+ PH
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSIVSTLPG-----------NKYGAKSGTAMASPHV 218
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLN 544
AAA + S +P+W+ ++S+L T T + F YG G +N
Sbjct: 219 AGAAALILSKHPNWTNTQVRSSLENTTTKLG------DSFYYGKGLIN 260
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 25/108 (23%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS GP + D+ APGV I Q++ P + +GT M+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-----QSTLPGN------KYGAYNGTXMASPHV 227
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLN 544
AAA + S +P+W+ ++S+L T T + F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKLG------DSFYYGKGLIN 269
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 25/108 (23%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS GP + D+ APGV I Q++ P + +GT M+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-----QSTLPGN------KYGAYNGTXMASPHV 227
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLN 544
AAA + S +P+W+ ++S+L T T + F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKLG------DSFYYGKGLIN 269
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 25/108 (23%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS G + D+ APGV I Q++ P + +GTSM+ PH
Sbjct: 187 ASFSSAGS--------ELDVMAPGVSI-----QSTLPG------GTYGAYNGTSMATPHV 227
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLN 544
AAA + S +P+W+ A ++ L +TAT + + F YG G +N
Sbjct: 228 AGAAALILSKHPTWTNAQVRDRLESTATYL------GSSFYYGKGLIN 269
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 25/108 (23%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS GP + D+ APGV I ++ + + SGTSM+ PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIXSTLPG-----------NKYGAYSGTSMASPHV 227
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLN 544
AAA + S +P+W+ ++S+L T T + F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTYLG------DSFYYGKGLIN 269
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 25/112 (22%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS G + ++ APGV + +++ PS + ++GTSM+ PH
Sbjct: 186 ASFSSVGS--------ELEVMAPGVSVYSTY-----PSN------TYTSLNGTSMASPHV 226
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLNPSMA 548
AAA + S YP+ S + +++ L +TAT N F YG G +N A
Sbjct: 227 AGAAALILSKYPTLSASQVRNRLSSTAT------NLGDSFYYGKGLINVEAA 272
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 25/108 (23%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS GP + D+ APGV I ++ + + SGT M+ PH
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICSTLPG-----------NKYGAKSGTXMASPHV 218
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLN 544
AAA + S +P+W+ ++S+L T T + F YG G +N
Sbjct: 219 AGAAALILSKHPNWTNTQVRSSLENTTTKLG------DSFYYGKGLIN 260
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 25/108 (23%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS GP + D+ APGV I W+ + + SGT M+ PH
Sbjct: 175 ASFSSVGP--------ELDVMAPGVSI---WSTLPG--------NKYGAKSGTXMASPHV 215
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLN 544
AAA + S +P+W+ ++S+L T T + F YG G +N
Sbjct: 216 AGAAALILSKHPNWTNTQVRSSLENTTTKLG------DSFYYGKGLIN 257
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 25/108 (23%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS GP + D+ APGV I Q++ P + +GTS + PH
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI-----QSTLPGN------KYGAYNGTSXASPHV 227
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLN 544
AAA + S +P+W+ ++S+L T T + F YG G +N
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLENTTTKLG------DSFYYGKGLIN 269
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 25/108 (23%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS G + D+ APGV I Q++ P + +GT M+ PH
Sbjct: 187 ASFSSVGS--------ELDVMAPGVSI-----QSTLPG------GTYGAYNGTXMATPHV 227
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLN 544
AAA + S +P+W+ A ++ L +TAT + NS F YG G +N
Sbjct: 228 AGAAALILSKHPTWTNAQVRDRLESTATYL---GNS---FYYGKGLIN 269
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 25/108 (23%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS G + D+ APGV I Q++ P + +GT M+ PH
Sbjct: 187 ASFSSAGS--------ELDVMAPGVSI-----QSTLPG------GTYGAYNGTCMATPHV 227
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLN 544
AAA + S +P+W+ A ++ L +TAT + NS F YG G +N
Sbjct: 228 AGAAALILSKHPTWTNAQVRDRLESTATYL---GNS---FYYGKGLIN 269
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 455 DLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAA 514
D+ APG I +SW ++S + N ISGTSM+ PH AA P+ SPA
Sbjct: 198 DIYAPGSSITSSWYTSNSAT---------NTISGTSMASPHVAGVAALYLDENPNLSPAQ 248
Query: 515 IKSALMTTATPMSV 528
+ + L T AT V
Sbjct: 249 VTNLLKTRATADKV 262
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 94/408 (23%), Positives = 157/408 (38%), Gaps = 85/408 (20%)
Query: 155 DFKSPRDSEGHGTHTSSTAAGGLVSKASL-FGIGFGTAIGGVPSARIAVYKICWFDGCX- 212
D K+ D E HGTH S +G S+ + + G P A++ + ++ +G
Sbjct: 79 DGKTAVDQE-HGTHVSGILSGNAPSETKEPYRLE-----GAXPEAQLLLXRVEIVNGLAD 132
Query: 213 -XXXXXXXXXXXXXXGVDIISISVGSFSAVNY--FEDTIAIGSFHAMKKGILTSNSAGNS 269
G +I+ S G+ +A+ Y D +A KG+ SAGN
Sbjct: 133 YARNYAQAIRDAINLGAKVINXSFGN-AALAYANLPDETKKAFDYAKSKGVSIVTSAGND 191
Query: 270 ----GPDAASLAN-----------VAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISINT 314
G LA+ A TL+VA+ + D++ E + + T
Sbjct: 192 SSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLT-----------ETVRVKT 240
Query: 315 IDYKGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDE--KLVQGKIVLCDELNDGFGAA 372
D + K P++ + NR + + + + G+ ++ K V+GKI L + + F
Sbjct: 241 ADQQDKEXPVL----STNRFEPNKAYDYAYANRGTKEDDFKDVKGKIALIERGDIDFKDK 296
Query: 373 TARA-----VGSVMQGNDDRDVAYSFP----LPNSYLDLYDGSKIAS------YLNSTS- 416
A+A VG ++ N D+ P P +++ DG + N+T
Sbjct: 297 IAKAKKAGAVGVLIYDNQDKGFPIELPNVDQXPAAFISRKDGLLLKDNPQKTITFNATPK 356
Query: 417 -IPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSE 475
+PTA+ K ++ FSS G N +KPD+ APG DIL+S
Sbjct: 357 VLPTASGTK-----------LSRFSSWGLTADGN--IKPDIAAPGQDILSSVAN------ 397
Query: 476 GDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAAIKSALMTTA 523
+ + +SGTS S P ++ Y + P S + A
Sbjct: 398 -----NKYAKLSGTSXSAPLVAGIXGLLQKQYETQYPDXTPSERLDLA 440
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 15/93 (16%)
Query: 436 VASFSSRGPNPITND--ILKPD--LTAPGVDILASWTQASSPSEGDPRISPFNIISGTSM 491
VA FSSRG D I K D ++APG + ++W + ISGTSM
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWFDGG-----------YATISGTSM 250
Query: 492 SCPHATAAAAYVKSFYPSWSPAAIKSALMTTAT 524
+ PHA AA + + P+ S ++ L T A+
Sbjct: 251 ASPHAAGLAAKIWAQSPAASNVDVRGELQTRAS 283
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 450 DILKPDLT---APGVDILASWTQASSPS-EGDPRISPFNIISGTSMSCPHATAAAAYVKS 505
DI P ++ A G+ + A Q+++ S +G+ +N GTSM+ PH + A V S
Sbjct: 328 DITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYN---GTSMATPHVSGVATLVWS 384
Query: 506 FYPSWSPAAIKSALMTTATPMSVEANSDAEFAYG 539
++P S + +++AL TA +SV A D + YG
Sbjct: 385 YHPECSASQVRAALNATADDLSV-AGRDNQTGYG 417
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 436 VASFSSRGPNPITNDIL----KPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSM 491
VA +SSRG D + +++APG + ++W +N ISGTSM
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNGG-----------YNTISGTSM 251
Query: 492 SCPHATAAAAYVKSFYPSWSPAAIKSALMTTATPMSVE 529
+ PH + AA + + PS S ++S L A + ++
Sbjct: 252 ATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIK 289
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 50/128 (39%), Gaps = 33/128 (25%)
Query: 157 KSPRDSEGHGTHTSSTA-AGGLVSKASLFGIGFGTAIGGVPSARIAVYKIC------WFD 209
S D GHGTH + TA A G +A ++G+ P A + YK+ + D
Sbjct: 63 NSCTDRNGHGTHVAGTALADGGSDQAGIYGV--------APDADLWAYKVLLDSGSGYSD 114
Query: 210 GCXXXXXXXXXXXXXXXGVDIISISVGS-------FSAVNYFEDTIAIGSFHAMKKGILT 262
IIS+S+GS SAVNY A KG+L
Sbjct: 115 DIAAAIRHAADQATATGTKTIISMSLGSSANNSLISSAVNY-----------AYSKGVLI 163
Query: 263 SNSAGNSG 270
+AGNSG
Sbjct: 164 VAAAGNSG 171
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 25/112 (22%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS G + ++ APG + +++ P+ + ++GTSM+ PH
Sbjct: 187 ASFSSVGA--------ELEVMAPGAGVYSTY-----PTN------TYATLNGTSMASPHV 227
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLNPSMA 548
AAA + S +P+ S + +++ L +TAT + + F YG G +N A
Sbjct: 228 AGAAALILSKHPNLSASQVRNRLSSTATYLG------SSFYYGKGLINVEAA 273
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 25/112 (22%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS G + ++ APG + +++ P+ + ++GTSM+ PH
Sbjct: 187 ASFSSVGA--------ELEVMAPGAGVYSTY-----PTN------TYATLNGTSMASPHV 227
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLNPSMA 548
AAA + S +P+ S + +++ L +TAT + + F YG G +N A
Sbjct: 228 AGAAALILSKHPNLSASQVRNRLSSTATYLG------SSFYYGKGLINVEAA 273
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 25/112 (22%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS G + ++ APG + +++ P+ + ++GTSM+ PH
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTY-----PTN------TYATLNGTSMASPHV 226
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLNPSMA 548
AAA + S +P+ S + +++ L +TAT + + F YG G +N A
Sbjct: 227 AGAAALILSKHPNLSASQVRNRLSSTATYLG------SSFYYGKGLINVEAA 272
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 25/112 (22%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS G + ++ APG + +++ P+ + ++GTSM+ PH
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTY-----PTN------TYATLNGTSMASPHV 226
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLNPSMA 548
AAA + S +P+ S + +++ L +TAT + + F YG G +N A
Sbjct: 227 AGAAALILSKHPNLSASQVRNRLSSTATYLG------SSFYYGKGLINVEAA 272
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 455 DLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAA 514
DL APG I ++W + + ++ ++GTSM+ PH AA PS +PA+
Sbjct: 196 DLFAPGASIPSAWYTSDTATQ---------TLNGTSMATPHVAGVAALYLEQNPSATPAS 246
Query: 515 IKSALMTTAT 524
+ SA++ AT
Sbjct: 247 VASAILNGAT 256
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 25/112 (22%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS G + ++ APG + +++ P+ + ++GTSM+ PH
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTY-----PTN------TYATLNGTSMASPHV 226
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLNPSMA 548
AAA + S +P+ S + +++ L +TAT + + F YG G +N A
Sbjct: 227 AGAAALILSKHPNLSASQVRNRLSSTATYLG------SSFYYGKGLINVEAA 272
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 17/112 (15%)
Query: 436 VASFSSRGPNPITNDIL----KPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSM 491
VA +SSRG D + +++APG + ++W +N ISGT M
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNGG-----------YNTISGTXM 251
Query: 492 SCPHATAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFA--YGSG 541
+ PH + AA + + PS S ++S L A + ++ A Y SG
Sbjct: 252 ATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIGDDYASG 303
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 50/128 (39%), Gaps = 33/128 (25%)
Query: 157 KSPRDSEGHGTHTSSTA-AGGLVSKASLFGIGFGTAIGGVPSARIAVYKIC------WFD 209
S D GHGTH + TA A G +A ++G+ P A + YK+ + D
Sbjct: 63 NSCTDRNGHGTHVAGTALADGGSDQAGIYGV--------APDADLWAYKVLLDSGSGYSD 114
Query: 210 GCXXXXXXXXXXXXXXXGVDIISISVGS-------FSAVNYFEDTIAIGSFHAMKKGILT 262
IIS+S+GS SAVNY A KG+L
Sbjct: 115 DIAAAIRHAADQATATGTKTIISMSLGSSANNSLISSAVNY-----------AYSKGVLI 163
Query: 263 SNSAGNSG 270
+AGNSG
Sbjct: 164 VAAAGNSG 171
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 25/112 (22%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS G + ++ APG + +++ P+ + ++GTSM+ PH
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTY-----PTN------TYATLNGTSMASPHV 226
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLNPSMA 548
AAA + S +P+ S + +++ L +TAT + + F YG G +N A
Sbjct: 227 AGAAALILSKHPNLSASQVRNRLSSTATYLG------SSFYYGKGLINVEAA 272
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 25/112 (22%)
Query: 437 ASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHA 496
ASFSS G + ++ APG + +++ P+ + ++GT M+ PH
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTY-----PTN------TYATLNGTXMASPHV 226
Query: 497 TAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLNPSMA 548
AAA + S +P+ S + +++ L +TAT + + F YG G +N A
Sbjct: 227 AGAAALILSKHPNLSASQVRNRLSSTATYLG------SSFYYGKGLINVEAA 272
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 21/72 (29%)
Query: 436 VASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPH 495
+ASFS+R +P+++APGVDIL+++ S + + GT+M+ PH
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYPDDS-----------YETLMGTAMATPH 329
Query: 496 ATAAAAYVKSFY 507
+ A +++ Y
Sbjct: 330 VSGVVALIQAAY 341
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 21/72 (29%)
Query: 436 VASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPH 495
+ASFS+R +P+++APGVDIL+++ S + + GT+M+ PH
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYPDDS-----------YETLMGTAMATPH 329
Query: 496 ATAAAAYVKSFY 507
+ A +++ Y
Sbjct: 330 VSGVVALIQAAY 341
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 21/72 (29%)
Query: 436 VASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPH 495
+ASFS+R +P+++APGVDIL+++ S + + GT+M+ PH
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYPDDS-----------YETLMGTAMATPH 329
Query: 496 ATAAAAYVKSFY 507
+ A +++ Y
Sbjct: 330 VSGVVALIQAAY 341
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 21/72 (29%)
Query: 436 VASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPH 495
+ASFS+R +P+++APGVDIL+++ S + + GT+M+ PH
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTYPDDS-----------YETLMGTAMATPH 329
Query: 496 ATAAAAYVKSFY 507
+ A +++ Y
Sbjct: 330 VSGVVALIQAAY 341
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 21/72 (29%)
Query: 436 VASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPH 495
+ASFS+R +P+++APGVDIL+++ S + + GT+M+ PH
Sbjct: 288 IASFSNR----------QPEVSAPGVDILSTYPDDS-----------YETLMGTAMATPH 326
Query: 496 ATAAAAYVKSFY 507
+ A +++ Y
Sbjct: 327 VSGVVALIQAAY 338
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 85/213 (39%), Gaps = 49/213 (23%)
Query: 382 QGNDDRDVAYSFPLPNSYLDLYDGSKIASYLNSTSIPTATILKSTAEK-NEFA------P 434
+G R + S P +L+D K A N + + A E NEFA
Sbjct: 125 KGEQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNE 184
Query: 435 VVA----SFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTS 490
V+A F R + TN + D+ APGV I +++ S + +SGT+
Sbjct: 185 VIAVGAVDFDLR-LSDFTNTNEEIDIVAPGVGIKSTYLD-----------SGYAELSGTA 232
Query: 491 MSCPHATAAAAYV-----KSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLNP 545
M+ PH A A + +F S S I + L+ ATP+ A ++ G+G L
Sbjct: 233 MAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAE-----GNGFLT- 286
Query: 546 SMAVNPGLVYDAGELDYVKFLCGQGYSDKNLSL 578
LD V+ + GQ +++K L
Sbjct: 287 --------------LDLVERITGQ-FTEKGKKL 304
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 80/204 (39%), Gaps = 48/204 (23%)
Query: 382 QGNDDRDVAYSFPLPNSYLDLYDGSKIASYLNSTSIPTATILKSTAEK-NEFA------P 434
+G R + S P +L+D K A N + + A E NEFA
Sbjct: 143 KGEQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVXAAGNEGDGREDTNEFAYPAAYNE 202
Query: 435 VVA----SFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTS 490
V+A F R + TN + D+ APGV I +++ S + +SGT+
Sbjct: 203 VIAVGAVDFDLR-LSDFTNTNEEIDIVAPGVGIKSTYLD-----------SGYAELSGTA 250
Query: 491 MSCPHATAAAAYV-----KSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLNP 545
M+ PH A A + +F S S I + L+ ATP+ A ++ G+G L
Sbjct: 251 MAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAE-----GNGFLT- 304
Query: 546 SMAVNPGLVYDAGELDYVKFLCGQ 569
LD V+ + GQ
Sbjct: 305 --------------LDLVERITGQ 314
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 21/72 (29%)
Query: 436 VASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPH 495
+ASFS+R +P+++APGVDIL+++ S + + GT+M+ PH
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTYPDDS-----------YETLMGTAMATPH 249
Query: 496 ATAAAAYVKSFY 507
+ A +++ Y
Sbjct: 250 VSGVVALIQAAY 261
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 21/72 (29%)
Query: 436 VASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPH 495
+ASFS+R +P+++APGVDIL+++ S + + GT+M+ PH
Sbjct: 213 IASFSNR----------QPEVSAPGVDILSTYPDDS-----------YETLMGTAMATPH 251
Query: 496 ATAAAAYVKSFY 507
+ A +++ Y
Sbjct: 252 VSGVVALIQAAY 263
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 80/204 (39%), Gaps = 48/204 (23%)
Query: 382 QGNDDRDVAYSFPLPNSYLDLYDGSKIASYLNSTSIPTATILKSTAEK-NEFA------P 434
+G R + S P +L+D K A N + + A E NEFA
Sbjct: 143 KGEQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVXAAGNEGDGREDTNEFAYPAAYNE 202
Query: 435 VVA----SFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTS 490
V+A F R + TN + D+ APGV I +++ S + +SGT+
Sbjct: 203 VIAVGAVDFDLR-LSDFTNTNEEIDIVAPGVGIKSTYLD-----------SGYAELSGTA 250
Query: 491 MSCPHATAAAAYV-----KSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLNP 545
M+ PH A A + +F S S I + L+ ATP+ A ++ G+G L
Sbjct: 251 MAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAE-----GNGFLT- 304
Query: 546 SMAVNPGLVYDAGELDYVKFLCGQ 569
LD V+ + GQ
Sbjct: 305 --------------LDLVERITGQ 314
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 85/213 (39%), Gaps = 49/213 (23%)
Query: 382 QGNDDRDVAYSFPLPNSYLDLYDGSKIASYLNSTSIPTATILKSTAEK-NEFA------P 434
+G R + S P +L+D K A N + + A E NEFA
Sbjct: 143 KGEQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNE 202
Query: 435 VVA----SFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTS 490
V+A F R + TN + D+ APGV I +++ S + +SGT+
Sbjct: 203 VIAVGAVDFDLR-LSDFTNTNEEIDIVAPGVGIKSTYLD-----------SGYAELSGTA 250
Query: 491 MSCPHATAAAAYV-----KSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLNP 545
M+ PH A A + +F S S I + L+ ATP+ A ++ G+G L
Sbjct: 251 MAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAE-----GNGFLT- 304
Query: 546 SMAVNPGLVYDAGELDYVKFLCGQGYSDKNLSL 578
LD V+ + GQ +++K L
Sbjct: 305 --------------LDLVERITGQ-FTEKGKKL 322
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 21/72 (29%)
Query: 436 VASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPH 495
+ASFS+R +P+++APGVDIL+++ S + + GT+M+ PH
Sbjct: 222 IASFSNR----------QPEVSAPGVDILSTYPDDS-----------YETLMGTAMATPH 260
Query: 496 ATAAAAYVKSFY 507
+ A +++ Y
Sbjct: 261 VSGVVALIQAAY 272
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 21/72 (29%)
Query: 436 VASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPH 495
+ASFS+R +P+++APGVDIL+++ S + + GT+M+ PH
Sbjct: 222 IASFSNR----------QPEVSAPGVDILSTYPDDS-----------YETLMGTAMATPH 260
Query: 496 ATAAAAYVKSFY 507
+ A +++ Y
Sbjct: 261 VSGVVALIQAAY 272
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 11/62 (17%)
Query: 455 DLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAA 514
D+ PG DIL++W S+ S ISGTSM+ PH AAY+ + + + +A
Sbjct: 200 DIFGPGTDILSTWIGGSTRS-----------ISGTSMATPHVAGLAAYLMTLGKTTAASA 248
Query: 515 IK 516
+
Sbjct: 249 CR 250
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 156 FKSPRDSEGHGTHTSSTAAG---GLVSKASLFGI 186
+ S RD GHGTH + T G+ K LFG+
Sbjct: 60 YYSSRDGNGHGTHCAGTVGSRTYGVAKKTQLFGV 93
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 21/72 (29%)
Query: 436 VASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPH 495
+ASFS+R +P+++APGVDIL+++ S + + GT M+ PH
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTYPDDS-----------YETLMGTXMATPH 249
Query: 496 ATAAAAYVKSFY 507
+ A +++ Y
Sbjct: 250 VSGVVALIQAAY 261
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 21/72 (29%)
Query: 436 VASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPH 495
+ASFS+R +P+++APGVDIL+++ S + + GT M+ PH
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTYPDDS-----------YETLMGTCMATPH 249
Query: 496 ATAAAAYVKSFY 507
+ A +++ Y
Sbjct: 250 VSGVVALIQAAY 261
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 446 PITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKS 505
P +N + L APG +IL++ + P S + + +GTSM+ PH + AA V S
Sbjct: 237 PFSNYGARVHLAAPGTNILST----IDVGQAGPVRSSYGMKAGTSMAAPHVSGVAALVIS 292
Query: 506 FYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLNPSMAVN 550
S S L + N + GSG ++ + AVN
Sbjct: 293 AANSIGKTLTPSELSDILVRTTSRFNGRLDRGLGSGIVDANAAVN 337
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 446 PITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKS 505
P +N + L APG +IL++ + P S + + +GTSM+ PH + AA V S
Sbjct: 237 PFSNYGARVHLAAPGTNILST----IDVGQAGPVRSSYGMKAGTSMAAPHVSGVAALVIS 292
Query: 506 FYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLNPSMAVN 550
S S L + N + GSG ++ + AVN
Sbjct: 293 AANSIGKTLTPSELSDILVRTTSRFNGRLDRGLGSGIVDANAAVN 337
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 436 VASFSSRGPNPITNDILKPDLTAPGVDILASWTQ-ASSPSEGDPRISPFNIISGTSMSCP 494
VA FSSRGP + +KPD+ APG IL++ + A S S + + GTSM+ P
Sbjct: 202 VAQFSSRGP--TKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATP 259
Query: 495 HATAAAA-----YVKSFYPSWSPAAIKSALMTTATPMSV 528
A +VK+ + P+ +K+AL+ A + +
Sbjct: 260 IVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL 298
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 455 DLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAA 514
D+ PG IL++W S+ S ISGTSM+ PH AAY+ + + + +A
Sbjct: 200 DIFGPGTSILSTWIGGSTRS-----------ISGTSMATPHVAGLAAYLMTLGKTTAASA 248
Query: 515 IK 516
+
Sbjct: 249 CR 250
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 156 FKSPRDSEGHGTHTSSTAAG---GLVSKASLFGI 186
+ S RD GHGTH + T G+V K LFG+
Sbjct: 60 YYSSRDGNGHGTHCAGTVGSRTYGVVKKTQLFGV 93
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 455 DLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAA 514
D+ PG IL++W S+ S ISGTSM+ PH AAY+ + + + +A
Sbjct: 200 DIFGPGTSILSTWIGGSTRS-----------ISGTSMATPHVAGLAAYLMTLGKTTAASA 248
Query: 515 IK 516
+
Sbjct: 249 CR 250
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 156 FKSPRDSEGHGTHTSSTAAG---GLVSKASLFGI 186
+ S RD GHGTH + T G+ K LFG+
Sbjct: 60 YYSSRDGNGHGTHCAGTVGSRTYGVAKKTQLFGV 93
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 11/52 (21%)
Query: 455 DLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSF 506
D+ APG +IL++W ++ N ISGTSM+ PH AY+
Sbjct: 203 DIFAPGSNILSTWIGGTT-----------NTISGTSMATPHIVGLGAYLAGL 243
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 15/95 (15%)
Query: 436 VASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPS-EGDPRISP------FNIISG 488
VA FSSR + APGV IL++ S EG P ++ G
Sbjct: 328 VAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQG 379
Query: 489 TSMSCPHATAAAAYVKSFYPSWSPAAIKSALMTTA 523
TSM+ PH T A + +P+ P I+ L TA
Sbjct: 380 TSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTA 414
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 43/125 (34%)
Query: 379 SVMQGNDDRDVAYSFPLPNSYLDLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVAS 438
+V GND+RD A + P S PT + +T + N+ V ++
Sbjct: 157 AVAAGNDNRDAANTSP--------------------ASEPTVCTVGAT-DSND---VRST 192
Query: 439 FSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATA 498
FS+ G D+ APG I ++W + N ISGTSM+ PH
Sbjct: 193 FSNYGR--------VVDIFAPGTSITSTWIGGRT-----------NTISGTSMATPHIAG 233
Query: 499 AAAYV 503
AAY+
Sbjct: 234 LAAYL 238
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 436 VASFSSRGPNPITNDILKPDLTAPGVDILASWTQ-ASSPSEGDPRISPFNIISGTSMSCP 494
VA FSSRGP + +KPD+ APG IL++ + A S S + GTS + P
Sbjct: 202 VAQFSSRGP--TKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYXGGTSXATP 259
Query: 495 HATAAAA-----YVKSFYPSWSPAAIKSALMTTATPMSV 528
A +VK+ + P+ +K+AL+ A + +
Sbjct: 260 IVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL 298
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 12/117 (10%)
Query: 484 NIISGTSMSCPHATAAAAY----VKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYG 539
+ +GTS + PH A A +K +SP +IK A+ TAT + FA G
Sbjct: 456 QLXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYV----DPFAQG 511
Query: 540 SGHLNPSMAVNPGLVYDAGELDYVKFLCGQG-YSDKNLSLVTGDNRSCSNSTNATVW 595
G LN A + + + ++F G +DK + L G R NS + V+
Sbjct: 512 HGLLNVEKAFEHLTEHRQSKDNXLRFSVRVGNNADKGIHLRQGVQR---NSIDYNVY 565
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 13/73 (17%)
Query: 455 DLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAA 514
D+ APGVDI+++ T + + +SGTSM+ PH AA + S +
Sbjct: 202 DVVAPGVDIVSTITG-----------NRYAYMSGTSMASPHVAGLAALLAS--QGRNNIE 248
Query: 515 IKSALMTTATPMS 527
I+ A+ TA +S
Sbjct: 249 IRQAIEQTADKIS 261
>pdb|2HG0|A Chain A, Structure Of The West Nile Virus Envelope Glycoprotein
Length = 408
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 124 KGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDF-KSPRDSEGHGTHTSSTAA 174
KGS T + F C+ K IG + + K+ F P E HG +++ A
Sbjct: 110 KGSIDTCAKFACSTKAIGRTILKENIKYEVAIFVHGPTTVESHGNYSTQVGA 161
>pdb|3IYW|A Chain A, West Nile Virus In Complex With Fab Fragments Of Mab
Cr4354 (Fitted Coordinates Of Envelope Proteins And Fab
Fragments Of One Icosahedral Asu)
pdb|3IYW|B Chain B, West Nile Virus In Complex With Fab Fragments Of Mab
Cr4354 (Fitted Coordinates Of Envelope Proteins And Fab
Fragments Of One Icosahedral Asu)
pdb|3IYW|C Chain C, West Nile Virus In Complex With Fab Fragments Of Mab
Cr4354 (Fitted Coordinates Of Envelope Proteins And Fab
Fragments Of One Icosahedral Asu)
Length = 403
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 124 KGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDF-KSPRDSEGHGTHTSSTAA 174
KGS T + F C+ K IG + + K+ F P E HG +++ A
Sbjct: 110 KGSIDTCAKFACSTKAIGRTILKENIKYEVAIFVHGPTTVESHGNYSTQVGA 161
>pdb|2OF6|A Chain A, Structure Of Immature West Nile Virus
pdb|2OF6|B Chain B, Structure Of Immature West Nile Virus
pdb|2OF6|C Chain C, Structure Of Immature West Nile Virus
pdb|3IXX|A Chain A, The Pseudo-Atomic Structure Of West Nile Immature Virus In
Complex With Fab Fragments Of The Anti-Fusion Loop
Antibody E53
pdb|3IXX|B Chain B, The Pseudo-Atomic Structure Of West Nile Immature Virus In
Complex With Fab Fragments Of The Anti-Fusion Loop
Antibody E53
pdb|3IXX|C Chain C, The Pseudo-Atomic Structure Of West Nile Immature Virus In
Complex With Fab Fragments Of The Anti-Fusion Loop
Antibody E53
pdb|3J0B|A Chain A, Cryo-Em Reconstruction Of West Nile Virus
pdb|3J0B|B Chain B, Cryo-Em Reconstruction Of West Nile Virus
pdb|3J0B|C Chain C, Cryo-Em Reconstruction Of West Nile Virus
Length = 400
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 124 KGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDF-KSPRDSEGHGTHTSSTAA 174
KGS T + F C+ K IG + + K+ F P E HG +++ A
Sbjct: 110 KGSIDTCAKFACSTKAIGRTILKENIKYEVAIFVHGPTTVESHGNYSTQVGA 161
>pdb|3I50|E Chain E, Crystal Structure Of The West Nile Virus Envelope
Glycoprotein In Complex With The E53 Antibody Fab
Length = 402
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 124 KGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDF-KSPRDSEGHGTHTSSTAA 174
KGS T + F C+ K IG + + K+ F P E HG +++ A
Sbjct: 110 KGSIDTCAKFACSTKAIGRTILKENIKYEVAIFVHGPTTVESHGNYSTQVGA 161
>pdb|2I69|A Chain A, Crystal Structure Of The West Nile Virus Envelope
Glycoprotein
Length = 403
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 124 KGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDF-KSPRDSEGHGTHTSSTAA 174
KGS T + F C+ K IG + + K+ F P E HG +++ A
Sbjct: 110 KGSIDTCAKFACSTKAIGRTILKENIKYEVAIFVHGPTTVESHGNYSTQVGA 161
>pdb|4FG0|A Chain A, Structure Of The St. Louis Encephalitis Virus Envelope
Protein In The Fusogenic Trimer Conformation
Length = 407
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 124 KGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDF-KSPRDSEGHGTH 168
KGS T + FTC NK G R + K+ F DS HG +
Sbjct: 110 KGSIDTCAKFTCKNKATGKTILRENIKYEVAIFVHGSTDSTSHGNY 155
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 11/74 (14%)
Query: 455 DLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAA 514
DL APG I ++W + ISGTSM+ PH AA +P
Sbjct: 196 DLFAPGSQIKSAWYDGG-----------YKTISGTSMATPHVAGVAALYLQENNGLTPLQ 244
Query: 515 IKSALMTTATPMSV 528
+ L + A+ V
Sbjct: 245 LTGLLNSRASENKV 258
>pdb|1UYN|X Chain X, Translocator Domain Of Autotransporter Nalp From Neisseria
Meningitidis
Length = 308
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 546 SMAVNPGLVYDAGELDYVKFLCGQGYSDKNLSLVTGDNRSCSNSTNATVWDL 597
S+++ G+ +DAG++ Y+K L G ++S TG + S N T+ L
Sbjct: 106 SISLFAGIRHDAGDIGYLKGLFSYGRYKNSISRSTGADEHAEGSVNGTLMQL 157
>pdb|2VUN|A Chain A, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|B Chain B, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|C Chain C, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|D Chain D, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
Length = 386
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 261 LTSNSAGNSGPDAASLANVAPWTLSVAASTVDRKF------VTRVKLGNGEVYEGISINT 314
+T++ + PD S N P +SV VDR + V+ GN ++ + ++
Sbjct: 205 VTADDVIKTKPDVVSHINGGPTAISV--QEVDRIMDETDFAMEIVQCGNPKIADYVARRA 262
Query: 315 IDYKGKMFPLIYGGDAPNRTGGYQ-GSNSRFCSLGSLDEKLVQGKIVLC 362
+ KG++ +I+G DAP+ TG G C + S+ + + ++ +C
Sbjct: 263 AE-KGQLGRVIFGNDAPSGTGLIPLGILRNMCQIASMSD--IDPEVAVC 308
>pdb|1UYO|X Chain X, Translocator Domain Of Autotransporter Nalp From Neisseria
Meningitidis
Length = 308
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 546 SMAVNPGLVYDAGELDYVKFLCGQGYSDKNLSLVTGDNRSCSNSTNATVWDL 597
S+++ G+ +DAG++ Y+K L G ++S TG + S N T+ L
Sbjct: 106 SISLFAGIRHDAGDIGYLKGLFSYGRYKNSISRSTGADEHAEGSVNGTLXQL 157
>pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZP|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZQ|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
pdb|3AZQ|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
Length = 662
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 161 DSEGHGTHTSSTAAGGLVSKASLFGIGFGTAIGGVPSARI 200
+ EGHG T L ++ SL+ FG + GVP ++
Sbjct: 621 EGEGHGFRRKETMVRALEAELSLYAQVFGVEVAGVPLLKL 660
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,441,046
Number of Sequences: 62578
Number of extensions: 909069
Number of successful extensions: 2060
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1871
Number of HSP's gapped (non-prelim): 195
length of query: 702
length of database: 14,973,337
effective HSP length: 106
effective length of query: 596
effective length of database: 8,340,069
effective search space: 4970681124
effective search space used: 4970681124
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)