Query 043420
Match_columns 702
No_of_seqs 396 out of 2753
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 04:52:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043420.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043420hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 2.6E-52 5.6E-57 443.1 30.0 293 69-524 1-307 (307)
2 cd07478 Peptidases_S8_CspA-lik 100.0 4.8E-49 1E-53 435.1 31.5 409 90-541 1-455 (455)
3 PTZ00262 subtilisin-like prote 100.0 8.8E-50 1.9E-54 440.4 24.4 295 80-557 301-620 (639)
4 cd07479 Peptidases_S8_SKI-1_li 100.0 9.6E-49 2.1E-53 403.5 26.5 243 86-527 1-254 (255)
5 cd05562 Peptidases_S53_like Pe 100.0 7.8E-49 1.7E-53 407.2 24.9 271 89-550 1-274 (275)
6 cd07475 Peptidases_S8_C5a_Pept 100.0 3.8E-48 8.2E-53 418.5 29.3 309 85-550 2-346 (346)
7 cd07497 Peptidases_S8_14 Pepti 100.0 4.4E-48 9.5E-53 407.5 25.4 287 92-523 1-311 (311)
8 cd07489 Peptidases_S8_5 Peptid 100.0 3.2E-47 7E-52 405.1 28.9 286 81-552 1-300 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 1.3E-46 2.9E-51 389.5 26.5 249 85-530 2-256 (267)
10 cd07474 Peptidases_S8_subtilis 100.0 1.1E-45 2.4E-50 390.6 30.5 282 92-548 1-295 (295)
11 cd05561 Peptidases_S8_4 Peptid 100.0 1.7E-45 3.7E-50 375.9 25.1 234 95-541 1-239 (239)
12 cd07483 Peptidases_S8_Subtilis 100.0 3.8E-45 8.2E-50 384.3 25.5 259 93-524 1-291 (291)
13 cd07493 Peptidases_S8_9 Peptid 100.0 1.5E-44 3.3E-49 374.8 25.3 243 94-524 1-261 (261)
14 cd04857 Peptidases_S8_Tripepti 100.0 2.5E-44 5.5E-49 385.8 27.5 220 160-526 182-412 (412)
15 cd07481 Peptidases_S8_Bacillop 100.0 3.3E-44 7.1E-49 372.9 24.9 247 92-524 1-264 (264)
16 cd07487 Peptidases_S8_1 Peptid 100.0 1.6E-43 3.5E-48 368.0 26.9 257 92-524 1-264 (264)
17 cd07485 Peptidases_S8_Fervidol 100.0 1.5E-43 3.2E-48 369.8 25.8 262 85-522 2-273 (273)
18 cd07484 Peptidases_S8_Thermita 100.0 7.1E-43 1.5E-47 362.3 26.4 246 77-526 13-259 (260)
19 cd07494 Peptidases_S8_10 Pepti 100.0 9.2E-43 2E-47 366.2 25.9 258 78-529 6-288 (298)
20 cd04847 Peptidases_S8_Subtilis 100.0 4.5E-43 9.7E-48 369.6 23.0 262 95-524 1-291 (291)
21 cd07490 Peptidases_S8_6 Peptid 100.0 3.3E-42 7.2E-47 356.0 26.1 253 94-524 1-254 (254)
22 cd04077 Peptidases_S8_PCSK9_Pr 100.0 3E-42 6.5E-47 356.5 25.3 232 85-525 17-255 (255)
23 cd07496 Peptidases_S8_13 Pepti 100.0 5.1E-42 1.1E-46 360.5 25.5 204 159-522 67-285 (285)
24 cd04842 Peptidases_S8_Kp43_pro 100.0 6.7E-42 1.5E-46 361.4 25.2 277 88-524 2-293 (293)
25 cd07498 Peptidases_S8_15 Pepti 100.0 1.4E-41 3.1E-46 348.7 23.9 240 95-522 1-242 (242)
26 cd07480 Peptidases_S8_12 Pepti 100.0 2.5E-41 5.4E-46 357.1 25.1 264 87-547 2-297 (297)
27 cd04843 Peptidases_S8_11 Pepti 100.0 5.6E-41 1.2E-45 348.8 22.7 248 80-524 2-277 (277)
28 cd07473 Peptidases_S8_Subtilis 100.0 2.1E-40 4.5E-45 343.7 26.4 247 93-524 2-259 (259)
29 cd07477 Peptidases_S8_Subtilis 100.0 2.6E-40 5.7E-45 336.5 25.2 226 94-522 1-229 (229)
30 PF00082 Peptidase_S8: Subtila 100.0 3.1E-41 6.7E-46 354.1 17.8 276 96-550 1-282 (282)
31 cd07491 Peptidases_S8_7 Peptid 100.0 2.7E-40 5.9E-45 338.1 21.8 216 92-506 2-229 (247)
32 cd07482 Peptidases_S8_Lantibio 100.0 1.8E-39 3.8E-44 343.1 24.4 252 94-522 1-294 (294)
33 cd04059 Peptidases_S8_Protein_ 100.0 5.5E-40 1.2E-44 347.4 18.7 252 79-524 25-297 (297)
34 cd07492 Peptidases_S8_8 Peptid 100.0 4.8E-39 1E-43 325.6 24.3 221 94-524 1-222 (222)
35 KOG1153 Subtilisin-related pro 100.0 1.6E-39 3.5E-44 334.9 15.9 277 38-523 145-460 (501)
36 cd04848 Peptidases_S8_Autotran 100.0 3.1E-38 6.7E-43 328.4 23.0 243 91-524 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 8.4E-37 1.8E-41 322.3 20.8 322 32-557 90-472 (1033)
38 cd07488 Peptidases_S8_2 Peptid 100.0 1.3E-33 2.9E-38 287.9 15.7 194 159-523 33-247 (247)
39 KOG1114 Tripeptidyl peptidase 100.0 4.6E-33 1E-37 306.2 19.1 238 163-550 310-557 (1304)
40 cd00306 Peptidases_S8_S53 Pept 100.0 3.1E-31 6.7E-36 270.2 24.5 234 95-522 1-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 8.4E-24 1.8E-28 238.9 21.8 273 79-550 126-420 (508)
42 KOG3526 Subtilisin-like propro 99.8 1.4E-20 3.1E-25 189.9 6.5 302 80-570 148-474 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 4.6E-17 1E-21 176.2 14.9 101 190-293 82-198 (361)
44 cd02120 PA_subtilisin_like PA_ 99.1 1.2E-09 2.6E-14 100.3 11.8 116 299-422 2-126 (126)
45 cd02133 PA_C5a_like PA_C5a_lik 99.0 3.7E-09 8E-14 99.2 10.1 109 319-446 25-142 (143)
46 COG4934 Predicted protease [Po 98.5 1.4E-06 3E-11 102.8 14.0 95 191-288 288-395 (1174)
47 PF06280 DUF1034: Fn3-like dom 98.3 1E-05 2.2E-10 72.6 12.5 81 612-693 8-112 (112)
48 KOG3525 Subtilisin-like propro 98.3 1.9E-06 4.2E-11 94.6 9.4 161 80-274 20-189 (431)
49 cd04816 PA_SaNapH_like PA_SaNa 98.3 2.2E-06 4.7E-11 78.1 8.2 80 342-421 29-121 (122)
50 PF05922 Inhibitor_I9: Peptida 98.3 1.9E-06 4.1E-11 72.4 6.3 47 26-72 36-82 (82)
51 cd02130 PA_ScAPY_like PA_ScAPY 98.2 1.5E-05 3.2E-10 72.7 11.0 78 343-421 32-121 (122)
52 cd04818 PA_subtilisin_1 PA_sub 98.2 6.2E-06 1.4E-10 74.6 7.9 81 340-421 25-117 (118)
53 cd02122 PA_GRAIL_like PA _GRAI 98.1 1.1E-05 2.3E-10 74.9 8.6 82 341-422 43-138 (138)
54 PF02225 PA: PA domain; Inter 98.1 2.7E-06 5.9E-11 74.5 4.1 71 342-412 19-101 (101)
55 cd02124 PA_PoS1_like PA_PoS1_l 98.1 3.1E-05 6.7E-10 71.0 10.7 81 340-421 39-128 (129)
56 cd00538 PA PA: Protease-associ 98.0 1.3E-05 2.8E-10 73.2 7.7 82 340-421 28-125 (126)
57 cd02127 PA_hPAP21_like PA_hPAP 98.0 2.1E-05 4.5E-10 71.0 8.6 80 342-422 21-116 (118)
58 cd02129 PA_hSPPL_like PA_hSPPL 98.0 2.2E-05 4.7E-10 70.5 7.7 74 341-414 29-114 (120)
59 cd02126 PA_EDEM3_like PA_EDEM3 97.9 2.8E-05 6.2E-10 71.1 7.8 78 342-420 27-124 (126)
60 cd02132 PA_GO-like PA_GO-like: 97.8 7.1E-05 1.5E-09 69.7 8.0 76 342-420 48-137 (139)
61 cd04813 PA_1 PA_1: Protease-as 97.8 6.7E-05 1.4E-09 67.5 7.4 75 339-415 24-112 (117)
62 cd02125 PA_VSR PA_VSR: Proteas 97.8 9.3E-05 2E-09 67.6 8.0 81 341-421 21-126 (127)
63 cd04817 PA_VapT_like PA_VapT_l 97.6 0.00013 2.9E-09 67.3 7.2 66 350-415 50-134 (139)
64 cd02123 PA_C_RZF_like PA_C-RZF 97.5 0.00033 7.2E-09 66.3 8.1 76 342-417 50-142 (153)
65 cd04819 PA_2 PA_2: Protease-as 97.5 0.001 2.2E-08 60.9 10.8 83 319-416 22-121 (127)
66 PF14874 PapD-like: Flagellar- 96.2 0.09 1.9E-06 45.9 11.9 82 612-696 20-101 (102)
67 cd04815 PA_M28_2 PA_M28_2: Pro 96.1 0.023 4.9E-07 52.6 7.7 70 351-420 34-132 (134)
68 PF10633 NPCBM_assoc: NPCBM-as 94.8 0.11 2.4E-06 43.1 7.0 58 612-669 5-63 (78)
69 cd04822 PA_M28_1_3 PA_M28_1_3: 94.7 0.091 2E-06 49.4 6.7 60 320-388 20-102 (151)
70 cd04820 PA_M28_1_1 PA_M28_1_1: 94.6 0.13 2.7E-06 47.6 7.5 58 320-386 22-96 (137)
71 cd02128 PA_TfR PA_TfR: Proteas 94.3 0.061 1.3E-06 52.1 4.8 63 352-414 51-155 (183)
72 cd04814 PA_M28_1 PA_M28_1: Pro 94.1 0.1 2.2E-06 48.5 5.6 59 319-386 19-100 (142)
73 PF11614 FixG_C: IG-like fold 92.9 0.95 2.1E-05 40.7 9.9 57 613-670 32-88 (118)
74 KOG2442 Uncharacterized conser 90.3 0.64 1.4E-05 50.7 6.6 71 352-422 91-175 (541)
75 KOG1114 Tripeptidyl peptidase 88.8 0.48 1E-05 55.5 4.5 24 89-112 77-100 (1304)
76 PF06030 DUF916: Bacterial pro 88.5 9.4 0.0002 34.5 11.9 69 612-682 27-119 (121)
77 cd02131 PA_hNAALADL2_like PA_h 88.1 0.49 1.1E-05 44.1 3.4 34 353-386 37-75 (153)
78 COG1470 Predicted membrane pro 87.2 4.5 9.8E-05 44.3 10.3 71 612-682 397-468 (513)
79 cd02121 PA_GCPII_like PA_GCPII 86.6 0.56 1.2E-05 47.0 3.1 35 352-386 67-106 (220)
80 PF00345 PapD_N: Pili and flag 82.7 14 0.00031 33.1 10.3 68 613-682 15-89 (122)
81 KOG4628 Predicted E3 ubiquitin 80.1 5.4 0.00012 42.6 7.3 76 340-415 60-150 (348)
82 TIGR02745 ccoG_rdxA_fixG cytoc 74.9 11 0.00024 42.0 8.3 55 613-668 347-401 (434)
83 cd04821 PA_M28_1_2 PA_M28_1_2: 70.7 6.4 0.00014 37.3 4.5 38 349-386 42-103 (157)
84 PF00635 Motile_Sperm: MSP (Ma 69.6 33 0.00071 29.8 8.7 53 612-667 18-70 (109)
85 COG1470 Predicted membrane pro 63.9 78 0.0017 35.1 11.4 56 612-668 284-345 (513)
86 PF07705 CARDB: CARDB; InterP 60.4 80 0.0017 26.5 9.2 52 612-667 19-72 (101)
87 PF07718 Coatamer_beta_C: Coat 59.0 44 0.00095 31.0 7.4 67 614-682 71-138 (140)
88 smart00635 BID_2 Bacterial Ig- 56.2 34 0.00073 28.3 5.8 40 641-685 4-43 (81)
89 KOG3920 Uncharacterized conser 55.3 18 0.00039 33.7 4.2 80 340-420 72-169 (193)
90 PF12690 BsuPI: Intracellular 44.8 68 0.0015 26.8 5.9 54 614-668 2-72 (82)
91 cd00407 Urease_beta Urease bet 44.3 42 0.00091 29.1 4.5 49 612-662 18-81 (101)
92 PF07610 DUF1573: Protein of u 43.9 90 0.0019 22.6 5.7 43 619-664 3-45 (45)
93 PRK13203 ureB urease subunit b 43.6 38 0.00082 29.4 4.1 49 612-662 18-81 (102)
94 PF02845 CUE: CUE domain; Int 41.2 28 0.00061 24.8 2.6 24 500-523 5-28 (42)
95 TIGR00192 urease_beta urease, 39.9 51 0.0011 28.5 4.3 49 612-662 18-81 (101)
96 PF00699 Urease_beta: Urease b 38.8 56 0.0012 28.2 4.4 49 612-662 17-80 (100)
97 PRK15098 beta-D-glucoside gluc 37.5 76 0.0017 38.3 7.1 53 612-667 667-728 (765)
98 PF08821 CGGC: CGGC domain; I 37.4 1.7E+02 0.0038 25.8 7.5 65 196-264 36-104 (107)
99 PRK13202 ureB urease subunit b 36.5 64 0.0014 28.1 4.4 47 614-662 21-82 (104)
100 COG4856 Uncharacterized protei 36.1 1.6E+02 0.0035 31.8 8.2 56 613-668 91-148 (403)
101 PRK13205 ureB urease subunit b 34.2 63 0.0014 30.1 4.2 49 612-662 18-81 (162)
102 PRK15019 CsdA-binding activato 34.0 40 0.00086 31.6 3.1 33 484-517 77-109 (147)
103 PRK13201 ureB urease subunit b 33.5 68 0.0015 29.2 4.3 49 612-662 18-81 (136)
104 TIGR03391 FeS_syn_CsdE cystein 32.5 44 0.00095 31.0 3.1 35 483-518 71-105 (138)
105 PLN03080 Probable beta-xylosid 30.9 69 0.0015 38.7 5.3 76 613-691 685-778 (779)
106 PRK15308 putative fimbrial pro 30.9 1.7E+02 0.0037 29.7 7.3 66 613-682 32-113 (234)
107 PF13940 Ldr_toxin: Toxin Ldr, 29.7 44 0.00096 22.6 1.8 13 491-503 14-26 (35)
108 PRK13204 ureB urease subunit b 29.7 81 0.0017 29.4 4.2 49 612-662 41-104 (159)
109 PRK09296 cysteine desufuration 29.7 46 0.00099 30.9 2.7 33 484-517 67-99 (138)
110 PF14016 DUF4232: Protein of u 29.4 4.3E+02 0.0092 23.8 10.4 78 612-692 18-112 (131)
111 PF04255 DUF433: Protein of un 29.0 48 0.001 25.4 2.3 38 483-520 11-54 (56)
112 TIGR01451 B_ant_repeat conserv 28.9 2.2E+02 0.0047 21.5 5.9 38 612-651 12-50 (53)
113 smart00546 CUE Domain that may 27.9 86 0.0019 22.3 3.4 25 499-523 5-29 (43)
114 COG2166 sufE Cysteine desulfur 27.5 56 0.0012 30.4 2.8 34 483-517 71-104 (144)
115 PF02657 SufE: Fe-S metabolism 27.3 63 0.0014 29.4 3.2 34 484-518 58-91 (125)
116 PF00553 CBM_2: Cellulose bind 25.2 4.4E+02 0.0095 22.6 9.2 31 613-643 14-45 (101)
117 PRK13198 ureB urease subunit b 24.8 1.1E+02 0.0024 28.5 4.2 49 612-662 46-109 (158)
118 KOG2018 Predicted dinucleotide 24.4 1.1E+02 0.0023 32.4 4.4 75 191-266 137-244 (430)
119 PF05753 TRAP_beta: Translocon 24.3 5.1E+02 0.011 25.2 9.0 64 612-679 38-108 (181)
120 PRK13192 bifunctional urease s 23.2 1E+02 0.0023 30.2 3.9 49 612-662 127-190 (208)
121 PF02601 Exonuc_VII_L: Exonucl 22.9 2.5E+02 0.0055 29.7 7.4 74 195-271 39-119 (319)
122 TIGR00845 caca sodium/calcium 22.4 1.2E+03 0.027 28.7 13.3 25 499-523 322-346 (928)
123 PF08260 Kinin: Insect kinin p 20.9 46 0.00099 15.1 0.5 6 438-443 3-8 (8)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.6e-52 Score=443.08 Aligned_cols=293 Identities=57% Similarity=0.930 Sum_probs=251.4
Q ss_pred eccccCCCccccCchhhccc-----CCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCc---ccCceeE
Q 043420 69 KQLHTTRSWDFMGFSEHVKR-----ATTESDIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNF---TCNNKII 140 (702)
Q Consensus 69 ~~~~~~~s~~~~g~~~~w~~-----~~~G~gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~---~~n~kii 140 (702)
++++++++++|+|++.+|+. +++|+||+|||||||||++||+|.+.+..+.+..|.+.|+.+..+ .|++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 47899999999999987775 999999999999999999999999988889999999999988777 4999999
Q ss_pred eeeecccCCC-----CCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeecccCCeEEEEEEecCC-CCCHH
Q 043420 141 GAKFYRSDKK-----FSPFDFKSPRDSEGHGTHTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFD-GCADA 214 (702)
Q Consensus 141 g~~~~~~~~~-----~~~~~~~~~~D~~gHGThVAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g~~~~ 214 (702)
+.++|..+.. .......++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++.. .+..+
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~~ 160 (307)
T cd04852 81 GARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGS 160 (307)
T ss_pred EEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccHH
Confidence 9999983221 11223566788999999999999999877666666667778999999999999999984 48899
Q ss_pred HHHHHHHHHHHCCCCEEEEeecCCCCCCCccCHHHHHHHHHHhCCCEEEEccCCCCCCCCCcCCCCCceEEeeeeccCcc
Q 043420 215 DILAAFDDAIADGVDIISISVGSFSAVNYFEDTIAIGSFHAMKKGILTSNSAGNSGPDAASLANVAPWTLSVAASTVDRK 294 (702)
Q Consensus 215 ~i~~ai~~A~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~a~~vitVgA~~~~~~ 294 (702)
++++||++|+++|++|||||||.... ....+.+..++..+.++|++||+||||+|+.....++..||+++|||++
T Consensus 161 ~~~~ai~~a~~~g~~Vin~S~G~~~~-~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~---- 235 (307)
T cd04852 161 DILAAIDQAIADGVDVISYSIGGGSP-DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST---- 235 (307)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCC-CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc----
Confidence 99999999999999999999999832 4556788888889999999999999999988878888899999998731
Q ss_pred eeeEEEeCCCeEEeeEeecccCCCCceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhc
Q 043420 295 FVTRVKLGNGEVYEGISINTIDYKGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATA 374 (702)
Q Consensus 295 ~~~~~~~~~g~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~a 374 (702)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeeCCCCCCCcccCcceEEecchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCC
Q 043420 375 RAVGSVMQGNDDRDVAYSFPLPNSYLDLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKP 454 (702)
Q Consensus 375 Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKP 454 (702)
+||
T Consensus 236 -----------------------------------------------------------------------------~~~ 238 (307)
T cd04852 236 -----------------------------------------------------------------------------LKP 238 (307)
T ss_pred -----------------------------------------------------------------------------Ccc
Confidence 477
Q ss_pred cEEeCCCcEEeeccCCCCCCCCCCCCCCceEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCc
Q 043420 455 DLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAAIKSALMTTAT 524 (702)
Q Consensus 455 DI~APG~~I~sa~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~ik~~L~~TA~ 524 (702)
||+|||++|++++....... .......|..++|||||||+|||++|||+|++|+|+|.+||++|++||+
T Consensus 239 di~apG~~i~~~~~~~~~~~-~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 239 DIAAPGVDILAAWTPEGADP-GDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred ceeeccCceeecccCccccc-cCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 99999999999986431111 2233457999999999999999999999999999999999999999984
No 2
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=4.8e-49 Score=435.15 Aligned_cols=409 Identities=22% Similarity=0.230 Sum_probs=257.3
Q ss_pred CCCCCcEEEEeccCCCCCCCCCCC-CCCCCCCCCccccccCCCCcccCceeEeeeecccC---C---CCCCCCCCCCCCC
Q 043420 90 TTESDIIVGMLDTGIWPESQSFSD-ENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSD---K---KFSPFDFKSPRDS 162 (702)
Q Consensus 90 ~~G~gV~VgVIDtGid~~Hp~f~d-~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~---~---~~~~~~~~~~~D~ 162 (702)
++|+||+|||||||||+.||+|.+ ++.+++...|++..+..... ....+...+..+ . ..++.+.....|.
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D~ 77 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP---GGYYGGGEYTEEIINAALASDNPYDIVPSRDE 77 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC---ccccCceEEeHHHHHHHHhcCCccccCcCCCC
Confidence 589999999999999999999985 56778899999887654321 111222222200 0 1122224456789
Q ss_pred CCChhHHHHHhccCCCCCCcccccccceeeecccCCeEEEEEEecCCC-----------CCHHHHHHHHHHHHHC-----
Q 043420 163 EGHGTHTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDG-----------CADADILAAFDDAIAD----- 226 (702)
Q Consensus 163 ~gHGThVAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----------~~~~~i~~ai~~A~~~----- 226 (702)
.||||||||||||+..++. .+.||||+|+|+++|++...+ +..+++++||+|+++.
T Consensus 78 ~GHGThvAGIiag~~~~~~--------~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~ 149 (455)
T cd07478 78 NGHGTHVAGIAAGNGDNNP--------DFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELN 149 (455)
T ss_pred CCchHHHHHHHhcCCCCCC--------CccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999975322 238999999999999998764 5688999999999874
Q ss_pred CCCEEEEeecCCCCCCCccCHHHHHHHHHHhC-CCEEEEccCCCCCCCCCcCCCCCceEEeeeeccCcceeeEEEeCCCe
Q 043420 227 GVDIISISVGSFSAVNYFEDTIAIGSFHAMKK-GILTSNSAGNSGPDAASLANVAPWTLSVAASTVDRKFVTRVKLGNGE 305 (702)
Q Consensus 227 gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~a~~vitVgA~~~~~~~~~~~~~~~g~ 305 (702)
.+.|||||||...+++...+++++++..+..+ |++||+||||+|....+..... ...+ ..-..++..+.++
T Consensus 150 ~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~---~~~~-----~~~~ie~~v~~~~ 221 (455)
T cd07478 150 KPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGI---VPNG-----ETKTVELNVGEGE 221 (455)
T ss_pred CCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeee---ccCC-----ceEEEEEEECCCC
Confidence 46799999999877788889999999988876 9999999999997543333210 0000 0001112222221
Q ss_pred EEeeEeecccC----------CCCceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcC
Q 043420 306 VYEGISINTID----------YKGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATAR 375 (702)
Q Consensus 306 ~~~g~~~~~~~----------~~~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aG 375 (702)
......++... +.++..+.+...........+.......|.... .+....|.-.+.-+ ..-...|
T Consensus 222 ~~~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~-~~~~~~g~~~i~i~----~~~~~~G 296 (455)
T cd07478 222 KGFNLEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYY-LPEPYTGDQLIFIR----FKNIKPG 296 (455)
T ss_pred cceEEEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEc-CCCCCCCCeEEEEE----ccCCCcc
Confidence 11111111110 111111111000000000000000000111000 01111222111111 1223457
Q ss_pred ceEEEEeeCCCCCCCcccCcceEEecchhHHHHHHHHhcCCCcEEEEecc--c--ccc--ccCCCcccccCCCCCCCCCC
Q 043420 376 AVGSVMQGNDDRDVAYSFPLPNSYLDLYDGSKIASYLNSTSIPTATILKS--T--AEK--NEFAPVVASFSSRGPNPITN 449 (702)
Q Consensus 376 a~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~--~--~~~--~~~~~~~a~fSS~Gp~~~~~ 449 (702)
.+-+.+............++|.-.+...+. .|+......|+++... . .++ +...+.++.||||||+. +
T Consensus 297 iW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t----~f~~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~~--~ 370 (455)
T cd07478 297 IWKIRLTGVSITDGRFDAWLPSRGLLSENT----RFLEPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPTR--D 370 (455)
T ss_pred ceEEEEEeccCCCceEEEEecCcCcCCCCC----EeecCCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcCC--C
Confidence 777777776554444566677655544432 2445555566666211 1 112 23345699999999998 8
Q ss_pred CCCCCcEEeCCCcEEeeccCCCCCCCCCCCCCCceEeccccchhHHHHHHHHHHHHhC------CCCCHHHHHHHHHhcC
Q 043420 450 DILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSFY------PSWSPAAIKSALMTTA 523 (702)
Q Consensus 450 ~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~------P~lsp~~ik~~L~~TA 523 (702)
+++||||+|||++|+++.+.+ .|..++|||||||||||++|||+|++ |.|++++||++|++||
T Consensus 371 ~~~kpdi~APG~~i~s~~~~~-----------~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA 439 (455)
T cd07478 371 GRIKPDIAAPGVNILTASPGG-----------GYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGA 439 (455)
T ss_pred CCcCceEEecCCCEEEeecCC-----------cEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHhC
Confidence 999999999999999998764 69999999999999999999999976 5679999999999999
Q ss_pred cCCCCCCCCCCCccCCCC
Q 043420 524 TPMSVEANSDAEFAYGSG 541 (702)
Q Consensus 524 ~~~~~~~~~~~~~~~G~G 541 (702)
+++....+ .+..||||
T Consensus 440 ~~~~~~~~--pn~~~GyG 455 (455)
T cd07478 440 RRRPGDEY--PNPEWGYG 455 (455)
T ss_pred ccCCCCCC--CCCCCCCC
Confidence 99874332 36789998
No 3
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=8.8e-50 Score=440.42 Aligned_cols=295 Identities=20% Similarity=0.190 Sum_probs=214.8
Q ss_pred cCchhhcc--cCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCce---eEeeeecccCCCCCCC
Q 043420 80 MGFSEHVK--RATTESDIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNK---IIGAKFYRSDKKFSPF 154 (702)
Q Consensus 80 ~g~~~~w~--~~~~G~gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~k---iig~~~~~~~~~~~~~ 154 (702)
++++.+|+ .+.+|+||+|||||||||++||+|.+.-.. .+....|.--.. .+++. -+.+++|. ++
T Consensus 301 i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~-n~~el~GrdgiD---dD~nG~vdd~~G~nfV-d~----- 370 (639)
T PTZ00262 301 TRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDV-NVKELHGRKGID---DDNNGNVDDEYGANFV-NN----- 370 (639)
T ss_pred hCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhccc-ccccccCccccc---cccCCccccccccccc-CC-----
Confidence 45666776 367899999999999999999999854110 011111100000 00111 12233444 11
Q ss_pred CCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeecccCCeEEEEEEecCCC-CCHHHHHHHHHHHHHCCCCEEEE
Q 043420 155 DFKSPRDSEGHGTHTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDG-CADADILAAFDDAIADGVDIISI 233 (702)
Q Consensus 155 ~~~~~~D~~gHGThVAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~ 233 (702)
...|.|..||||||||||||...++. | +.||||+|+|+++|+++..+ +..+++++||+||++.|++||||
T Consensus 371 -~~~P~D~~GHGTHVAGIIAA~gnN~~---G-----i~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINm 441 (639)
T PTZ00262 371 -DGGPMDDNYHGTHVSGIISAIGNNNI---G-----IVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMING 441 (639)
T ss_pred -CCCCCCCCCcchHHHHHHhccccCCC---c-----eeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEe
Confidence 24567899999999999999754321 2 28999999999999998776 78899999999999999999999
Q ss_pred eecCCCCCCCccCHHHHHHHHHHhCCCEEEEccCCCCCCCCC--------------cCC----CCCceEEeeeeccCcce
Q 043420 234 SVGSFSAVNYFEDTIAIGSFHAMKKGILTSNSAGNSGPDAAS--------------LAN----VAPWTLSVAASTVDRKF 295 (702)
Q Consensus 234 SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------------~~~----~a~~vitVgA~~~~~~~ 295 (702)
|||+.. ....+..++.+|.++|++||+||||+|..... ++. ..+++|+|||++.+..
T Consensus 442 SlG~~~----~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~~- 516 (639)
T PTZ00262 442 SFSFDE----YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDKN- 516 (639)
T ss_pred ccccCC----ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCCC-
Confidence 999762 23567888889999999999999999864211 111 2467788877543210
Q ss_pred eeEEEeCCCeEEeeEeecccCCCCceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcC
Q 043420 296 VTRVKLGNGEVYEGISINTIDYKGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATAR 375 (702)
Q Consensus 296 ~~~~~~~~g~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aG 375 (702)
T Consensus 517 -------------------------------------------------------------------------------- 516 (639)
T PTZ00262 517 -------------------------------------------------------------------------------- 516 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEeeCCCCCCCcccCcceEEecchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCc
Q 043420 376 AVGSVMQGNDDRDVAYSFPLPNSYLDLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPD 455 (702)
Q Consensus 376 a~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPD 455 (702)
....++.||++|. .++|
T Consensus 517 --------------------------------------------------------~~~s~s~~Snyg~-------~~VD 533 (639)
T PTZ00262 517 --------------------------------------------------------NQYSLSPNSFYSA-------KYCQ 533 (639)
T ss_pred --------------------------------------------------------CcccccccccCCC-------Ccce
Confidence 0011345566652 2359
Q ss_pred EEeCCCcEEeeccCCCCCCCCCCCCCCceEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCCCCCCCC
Q 043420 456 LTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAE 535 (702)
Q Consensus 456 I~APG~~I~sa~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~ 535 (702)
|+|||++|+++++.+ .|..++|||||||||||+||||++++|+|++.+|+++|++||.++... +
T Consensus 534 IaAPG~dI~St~p~g-----------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~-----~ 597 (639)
T PTZ00262 534 LAAPGTNIYSTFPKN-----------SYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSL-----K 597 (639)
T ss_pred EEeCCCCeeeccCCC-----------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCC-----C
Confidence 999999999998764 699999999999999999999999999999999999999999887543 2
Q ss_pred ccCC-CCCcCccCcCCCceeeeC
Q 043420 536 FAYG-SGHLNPSMAVNPGLVYDA 557 (702)
Q Consensus 536 ~~~G-~G~in~~~Al~~glv~~~ 557 (702)
..+| +|+||+++|++..+-+..
T Consensus 598 n~~~wgG~LDa~kAV~~Ai~~~~ 620 (639)
T PTZ00262 598 NKVKWGGYLDIHHAVNLAIASKH 620 (639)
T ss_pred CccccCcEEcHHHHHHHHHhccc
Confidence 2233 389999999997665433
No 4
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=9.6e-49 Score=403.49 Aligned_cols=243 Identities=24% Similarity=0.350 Sum_probs=199.9
Q ss_pred cccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCCCCCCCCCCC
Q 043420 86 VKRATTESDIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFKSPRDSEGH 165 (702)
Q Consensus 86 w~~~~~G~gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gH 165 (702)
|+++++|+||+|||||+|||.+||+|.+. +...+|. + .....|..||
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~-------------------------~~~~~~~-~-------~~~~~d~~gH 47 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV-------------------------KERTNWT-N-------EKTLDDGLGH 47 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc-------------------------ccccccC-C-------CCCCCCCCCc
Confidence 89999999999999999999999999731 0111222 1 1234578899
Q ss_pred hhHHHHHhccCCCCCCcccccccceeeecccCCeEEEEEEecCCC-CCHHHHHHHHHHHHHCCCCEEEEeecCCCCCCCc
Q 043420 166 GTHTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDG-CADADILAAFDDAIADGVDIISISVGSFSAVNYF 244 (702)
Q Consensus 166 GThVAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~SlG~~~~~~~~ 244 (702)
||||||||+|+.. .+.||||+|+|+.+|++...+ ...+.++++|+||++.++||||||||... +.
T Consensus 48 GT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~---~~ 113 (255)
T cd07479 48 GTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD---FM 113 (255)
T ss_pred HHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC---CC
Confidence 9999999998742 137999999999999998776 56778999999999999999999999862 33
Q ss_pred cCHHHHHHHHHHhCCCEEEEccCCCCCCCCC--cCCCCCceEEeeeeccCcceeeEEEeCCCeEEeeEeecccCCCCcee
Q 043420 245 EDTIAIGSFHAMKKGILTSNSAGNSGPDAAS--LANVAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISINTIDYKGKMF 322 (702)
Q Consensus 245 ~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--~~~~a~~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~ 322 (702)
..++..++.++.++|++||+||||+|+...+ .+...+++|+|||++.+
T Consensus 114 ~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~------------------------------ 163 (255)
T cd07479 114 DKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD------------------------------ 163 (255)
T ss_pred CcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC------------------------------
Confidence 4567777888889999999999999986444 34566889999986533
Q ss_pred eEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCCCCCcccCcceEEecc
Q 043420 323 PLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDRDVAYSFPLPNSYLDL 402 (702)
Q Consensus 323 ~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~p~~~i~~ 402 (702)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCC----CCCCCCCcEEeCCCcEEeeccCCCCCCCCCC
Q 043420 403 YDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPI----TNDILKPDLTAPGVDILASWTQASSPSEGDP 478 (702)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~ 478 (702)
+.++.|||+|++.+ .++++||||+|||.+|+++....
T Consensus 164 -------------------------------~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~~-------- 204 (255)
T cd07479 164 -------------------------------DNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLKG-------- 204 (255)
T ss_pred -------------------------------CccccccCCCCCcccccCCCCCcCccEEecCCCeeccccCC--------
Confidence 34688999996531 26789999999999999876543
Q ss_pred CCCCceEeccccchhHHHHHHHHHHHHhCC----CCCHHHHHHHHHhcCcCCC
Q 043420 479 RISPFNIISGTSMSCPHATAAAAYVKSFYP----SWSPAAIKSALMTTATPMS 527 (702)
Q Consensus 479 ~~~~y~~~sGTSmAaP~VAG~aALl~q~~P----~lsp~~ik~~L~~TA~~~~ 527 (702)
.|..++|||||||||||++|||+|++| .++|.+||++|++||+++.
T Consensus 205 ---~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 205 ---GCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred ---CeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 688999999999999999999999998 7999999999999999875
No 5
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=7.8e-49 Score=407.18 Aligned_cols=271 Identities=24% Similarity=0.259 Sum_probs=205.1
Q ss_pred CCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCCCCCCCCCCChhH
Q 043420 89 ATTESDIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFKSPRDSEGHGTH 168 (702)
Q Consensus 89 ~~~G~gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGTh 168 (702)
|++|+||+|+|||||||.+||+|.+-..+ ++.+...+. .. .....|..+||||
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~--------------------~l~~~~~~~-~~------~~~~~d~~gHGT~ 53 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASG--------------------DLPGNVNVL-GD------LDGGSGGGDEGRA 53 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCC--------------------CCCcceeec-cc------cCCCCCCCchHHH
Confidence 57999999999999999999865432111 111111111 00 1234578899999
Q ss_pred HHHHhccCCCCCCcccccccceeeecccCCeEEEEEEecCCCCCHHHHHHHHHHHHHCCCCEEEEeecCCCCCCCccCHH
Q 043420 169 TSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDGCADADILAAFDDAIADGVDIISISVGSFSAVNYFEDTI 248 (702)
Q Consensus 169 VAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~gvdVIn~SlG~~~~~~~~~~~~ 248 (702)
|||||+ ||||+|+|+.+|+. ...+++++||+||++.|++|||||||......+....+
T Consensus 54 vAgii~------------------GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~ 111 (275)
T cd05562 54 MLEIIH------------------DIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPI 111 (275)
T ss_pred HHHHHh------------------ccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHH
Confidence 999993 78999999999874 45788999999999999999999999873333345578
Q ss_pred HHHHHHHHhC-CCEEEEccCCCCCCCC-CcCCCCCceEEeeeeccCcceeeEEEeCCCeEEeeEeecccCCCCceeeEEE
Q 043420 249 AIGSFHAMKK-GILTSNSAGNSGPDAA-SLANVAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISINTIDYKGKMFPLIY 326 (702)
Q Consensus 249 ~~a~~~a~~~-Gi~vV~AAGN~G~~~~-~~~~~a~~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~lv~ 326 (702)
..++.++.++ |++||+||||+|.... ..+...+++|+|||++.+.....+...+.
T Consensus 112 ~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~~----------------------- 168 (275)
T cd05562 112 AQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPAP----------------------- 168 (275)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccccccc-----------------------
Confidence 8888888887 9999999999998543 33567899999999875531100000000
Q ss_pred cCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCCCCCcccCcceEEecchhHH
Q 043420 327 GGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDRDVAYSFPLPNSYLDLYDGS 406 (702)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~ 406 (702)
T Consensus 169 -------------------------------------------------------------------------------- 168 (275)
T cd05562 169 -------------------------------------------------------------------------------- 168 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCCC-cEEeeccCCCCCCCCCCCCCCceE
Q 043420 407 KIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGV-DILASWTQASSPSEGDPRISPFNI 485 (702)
Q Consensus 407 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~~~~~~~~~y~~ 485 (702)
.......+.|+++||+. ++++||||+|||. ++.+.+.. +.|..
T Consensus 169 -----------------------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~-----------~~~~~ 212 (275)
T cd05562 169 -----------------------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG-----------DGPPN 212 (275)
T ss_pred -----------------------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC-----------Cceee
Confidence 00001245678899987 7899999999975 44444332 36899
Q ss_pred eccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCCCCCCCCccCCCCCcCccCcCC
Q 043420 486 ISGTSMSCPHATAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLNPSMAVN 550 (702)
Q Consensus 486 ~sGTSmAaP~VAG~aALl~q~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~ 550 (702)
++|||||||||||++|||+|++|+|++++||++|++||+++.... .+..||||+||+.+|++
T Consensus 213 ~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g---~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 213 FFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEPG---YDNASGSGLVDADRAVA 274 (275)
T ss_pred cccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCC---CCCCcCcCcccHHHHhh
Confidence 999999999999999999999999999999999999999886543 35689999999999986
No 6
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=3.8e-48 Score=418.54 Aligned_cols=309 Identities=27% Similarity=0.349 Sum_probs=236.8
Q ss_pred hcccCC-CCCCcEEEEeccCCCCCCCCCCCCCCCCCCC-----CccccccCCCCcccCceeEeeeecccCCCCCCCCCCC
Q 043420 85 HVKRAT-TESDIIVGMLDTGIWPESQSFSDENFGPPPK-----KWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFKS 158 (702)
Q Consensus 85 ~w~~~~-~G~gV~VgVIDtGid~~Hp~f~d~~~~~~~~-----~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~ 158 (702)
+|+++. +|+||+|+|||||||++||+|.+....+... .+...+..+...+++.+++.+++|. ++..+ ...
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~ 77 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYA-DNNDD---ILD 77 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCC-CCCCc---cCC
Confidence 788877 9999999999999999999998654332211 3334444455557788899988887 33111 111
Q ss_pred CCCCCCChhHHHHHhccCCCCCCcccccccceeeecccCCeEEEEEEecC--C-CCCHHHHHHHHHHHHHCCCCEEEEee
Q 043420 159 PRDSEGHGTHTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWF--D-GCADADILAAFDDAIADGVDIISISV 235 (702)
Q Consensus 159 ~~D~~gHGThVAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~-g~~~~~i~~ai~~A~~~gvdVIn~Sl 235 (702)
..|..+|||||||||+|...+... ...+.||||+|+|+.+|++.. . .+....++++++++++.|++||||||
T Consensus 78 ~~~~~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~ 152 (346)
T cd07475 78 EDDGSSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSL 152 (346)
T ss_pred CCCCCCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 457889999999999998753221 223489999999999999973 3 37888899999999999999999999
Q ss_pred cCCCCCCCccCHHHHHHHHHHhCCCEEEEccCCCCCCCCCc----------------CCCCCceEEeeeeccCcceeeEE
Q 043420 236 GSFSAVNYFEDTIAIGSFHAMKKGILTSNSAGNSGPDAASL----------------ANVAPWTLSVAASTVDRKFVTRV 299 (702)
Q Consensus 236 G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~----------------~~~a~~vitVgA~~~~~~~~~~~ 299 (702)
|...........+..++.++.++|++||+||||+|...... +...+++|+||++....
T Consensus 153 G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~~------ 226 (346)
T cd07475 153 GSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKKV------ 226 (346)
T ss_pred CcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeeccccc------
Confidence 99844335567788888899999999999999998654221 12345666776643110
Q ss_pred EeCCCeEEeeEeecccCCCCceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEE
Q 043420 300 KLGNGEVYEGISINTIDYKGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGS 379 (702)
Q Consensus 300 ~~~~g~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~ 379 (702)
T Consensus 227 -------------------------------------------------------------------------------- 226 (346)
T cd07475 227 -------------------------------------------------------------------------------- 226 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeCCCCCCCcccCcceEEecchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeC
Q 043420 380 VMQGNDDRDVAYSFPLPNSYLDLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAP 459 (702)
Q Consensus 380 i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~AP 459 (702)
.....+.++.||++||+. .+++||||+||
T Consensus 227 -------------------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdi~ap 255 (346)
T cd07475 227 -------------------------------------------------PNPNGGQMSGFSSWGPTP--DLDLKPDITAP 255 (346)
T ss_pred -------------------------------------------------CCCCCCccCCCcCCCCCc--ccCcCCeEEeC
Confidence 011225678999999998 89999999999
Q ss_pred CCcEEeeccCCCCCCCCCCCCCCceEeccccchhHHHHHHHHHHHHh----CCCCCHHH----HHHHHHhcCcCCCCCCC
Q 043420 460 GVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSF----YPSWSPAA----IKSALMTTATPMSVEAN 531 (702)
Q Consensus 460 G~~I~sa~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~lsp~~----ik~~L~~TA~~~~~~~~ 531 (702)
|.+|+++.... .|..++|||||||+|||++|||+|+ +|.|++.+ ||.+|++||.+......
T Consensus 256 G~~i~s~~~~~-----------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~~~ 324 (346)
T cd07475 256 GGNIYSTVNDN-----------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSED 324 (346)
T ss_pred CCCeEEecCCC-----------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcccccCC
Confidence 99999987653 6889999999999999999999998 78999876 88899999985433322
Q ss_pred C--C-CCccCCCCCcCccCcCC
Q 043420 532 S--D-AEFAYGSGHLNPSMAVN 550 (702)
Q Consensus 532 ~--~-~~~~~G~G~in~~~Al~ 550 (702)
. . .+.++|+|+||+.+||+
T Consensus 325 ~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 325 TKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred CCccCCccccCcchhcHHHhhC
Confidence 1 1 56788999999999985
No 7
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.4e-48 Score=407.49 Aligned_cols=287 Identities=25% Similarity=0.212 Sum_probs=191.3
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCCCCCCCCCCChhHHHH
Q 043420 92 ESDIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFKSPRDSEGHGTHTSS 171 (702)
Q Consensus 92 G~gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVAg 171 (702)
|+||+|+|||||||.+||+|.+... ..|+..++ +..++....++.. .....+.|++||||||||
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~----~~~~~~~d------~~~~~~~g~d~~~------~~~~~~~D~~gHGThvAG 64 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN----FSWKLKFD------YKAYLLPGMDKWG------GFYVIMYDFFSHGTSCAS 64 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC----CCcccccC------cCCCccCCcCCCC------CccCCCCCccccchhHHH
Confidence 8999999999999999999974311 01111111 0111222222220 011346789999999999
Q ss_pred HhccCCCCCCcccccc-cceeeecccCCeEEEEEEecCCC-CCHHHHHH-------HHHHH--HHCCCCEEEEeecCCCC
Q 043420 172 TAAGGLVSKASLFGIG-FGTAIGGVPSARIAVYKICWFDG-CADADILA-------AFDDA--IADGVDIISISVGSFSA 240 (702)
Q Consensus 172 iaaG~~~~~~~~~G~~-~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~-------ai~~A--~~~gvdVIn~SlG~~~~ 240 (702)
||||......+.+++. ...+.||||+|+|+.+|++...+ +....+.. +++|. .+++++|||||||....
T Consensus 65 iiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~ 144 (311)
T cd07497 65 VAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNF 144 (311)
T ss_pred HHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCC
Confidence 9999864333222211 12348999999999999997543 33333333 33433 36899999999998622
Q ss_pred CC----CccCHHHHHHHHH-HhCCCEEEEccCCCCCCCCCc--CCCCCceEEeeeeccCcceeeEEEeCCCeEEeeEeec
Q 043420 241 VN----YFEDTIAIGSFHA-MKKGILTSNSAGNSGPDAASL--ANVAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISIN 313 (702)
Q Consensus 241 ~~----~~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~~~~--~~~a~~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~ 313 (702)
.. ...+..+..++.+ .++|++||+||||+|+...++ +..++++|+|||++.......+
T Consensus 145 ~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~--------------- 209 (311)
T cd07497 145 AYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFY--------------- 209 (311)
T ss_pred CccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchh---------------
Confidence 11 1123334444332 379999999999999865443 4467999999998643210000
Q ss_pred ccCCCCceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCCCCCccc
Q 043420 314 TIDYKGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDRDVAYSF 393 (702)
Q Consensus 314 ~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~ 393 (702)
...+
T Consensus 210 ---------~~~~------------------------------------------------------------------- 213 (311)
T cd07497 210 ---------LFGY------------------------------------------------------------------- 213 (311)
T ss_pred ---------hhcc-------------------------------------------------------------------
Confidence 0000
Q ss_pred CcceEEecchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCCCcEEeeccCCCCC
Q 043420 394 PLPNSYLDLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSP 473 (702)
Q Consensus 394 ~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 473 (702)
.....+.++.||||||+. ++++||||+|||++|+++.+.....
T Consensus 214 -----------------------------------~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~ 256 (311)
T cd07497 214 -----------------------------------LPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSG 256 (311)
T ss_pred -----------------------------------ccCCCCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCC
Confidence 001125689999999998 8999999999999999987644210
Q ss_pred CCCCCCCCCceEeccccchhHHHHHHHHHHHHhCC------CCCHHHHHHHHHhcC
Q 043420 474 SEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYP------SWSPAAIKSALMTTA 523 (702)
Q Consensus 474 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P------~lsp~~ik~~L~~TA 523 (702)
. .......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 257 ~-~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 257 G-ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred c-ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 0 111224689999999999999999999999986 689999999999997
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.2e-47 Score=405.07 Aligned_cols=286 Identities=30% Similarity=0.449 Sum_probs=228.6
Q ss_pred CchhhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCC---CCCCCC
Q 043420 81 GFSEHVKRATTESDIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKF---SPFDFK 157 (702)
Q Consensus 81 g~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~---~~~~~~ 157 (702)
|++.+|+.+++|+||+|||||+|||++||+|.+.- .+ +.++.+.+++..+... ......
T Consensus 1 ~v~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~-~~-----------------~~~~~~~~d~~~~~~~~~~~~~~~~ 62 (312)
T cd07489 1 GVDKLHAEGITGKGVKVAVVDTGIDYTHPALGGCF-GP-----------------GCKVAGGYDFVGDDYDGTNPPVPDD 62 (312)
T ss_pred ChhhHHhCCCCCCCCEEEEEECCCCCCChhhhcCC-CC-----------------CceeccccccCCcccccccCCCCCC
Confidence 57789999999999999999999999999998531 11 1223333333311100 011133
Q ss_pred CCCCCCCChhHHHHHhccCCCCCCcccccccceeeecccCCeEEEEEEecCCC-CCHHHHHHHHHHHHHCCCCEEEEeec
Q 043420 158 SPRDSEGHGTHTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDG-CADADILAAFDDAIADGVDIISISVG 236 (702)
Q Consensus 158 ~~~D~~gHGThVAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~SlG 236 (702)
.+.|..+|||||||||+|...+ .|+ .||||+|+|+.+|++...+ ...+.++++|++|++++++|||||||
T Consensus 63 ~~~d~~gHGT~vAgiia~~~~~----~~~-----~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g 133 (312)
T cd07489 63 DPMDCQGHGTHVAGIIAANPNA----YGF-----TGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLG 133 (312)
T ss_pred CCCCCCCcHHHHHHHHhcCCCC----Cce-----EEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCC
Confidence 5567799999999999998643 233 8999999999999998665 67778999999999999999999999
Q ss_pred CCCCCCCccCHHHHHHHHHHhCCCEEEEccCCCCCCCC---CcCCCCCceEEeeeeccCcceeeEEEeCCCeEEeeEeec
Q 043420 237 SFSAVNYFEDTIAIGSFHAMKKGILTSNSAGNSGPDAA---SLANVAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISIN 313 (702)
Q Consensus 237 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~a~~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~ 313 (702)
... .+....+...+.++.++|+++|+||||+|.... ..+...+++|+||+++
T Consensus 134 ~~~--~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~----------------------- 188 (312)
T cd07489 134 GPS--GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD----------------------- 188 (312)
T ss_pred cCC--CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-----------------------
Confidence 872 344577888888999999999999999987532 2345668888888642
Q ss_pred ccCCCCceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCCCCCccc
Q 043420 314 TIDYKGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDRDVAYSF 393 (702)
Q Consensus 314 ~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~ 393 (702)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcceEEecchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCCCcEEeeccCCCCC
Q 043420 394 PLPNSYLDLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSP 473 (702)
Q Consensus 394 ~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 473 (702)
+.||++||+. ....||||+|||.+++++++...
T Consensus 189 -------------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~~-- 221 (312)
T cd07489 189 -------------------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLAG-- 221 (312)
T ss_pred -------------------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCCC--
Confidence 4578999998 78999999999999999887642
Q ss_pred CCCCCCCCCceEeccccchhHHHHHHHHHHHHhC-CCCCHHHHHHHHHhcCcCCCCCCCCC------CCccCCCCCcCcc
Q 043420 474 SEGDPRISPFNIISGTSMSCPHATAAAAYVKSFY-PSWSPAAIKSALMTTATPMSVEANSD------AEFAYGSGHLNPS 546 (702)
Q Consensus 474 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-P~lsp~~ik~~L~~TA~~~~~~~~~~------~~~~~G~G~in~~ 546 (702)
+.|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++...+... ...++|+|+||++
T Consensus 222 -------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~~~~~~~~~~G~G~vn~~ 294 (312)
T cd07489 222 -------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSALPDLAPVAQQGAGLVNAY 294 (312)
T ss_pred -------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccccCCCCHhhcCcceeeHH
Confidence 258999999999999999999999999 99999999999999999876544321 2368999999999
Q ss_pred CcCCCc
Q 043420 547 MAVNPG 552 (702)
Q Consensus 547 ~Al~~g 552 (702)
+|++..
T Consensus 295 ~a~~~~ 300 (312)
T cd07489 295 KALYAT 300 (312)
T ss_pred HHhcCC
Confidence 999953
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=1.3e-46 Score=389.47 Aligned_cols=249 Identities=27% Similarity=0.302 Sum_probs=205.2
Q ss_pred hcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCCCCCCCCCC
Q 043420 85 HVKRATTESDIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFKSPRDSEG 164 (702)
Q Consensus 85 ~w~~~~~G~gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~g 164 (702)
+|+.+++|+||+|||||+|||++||+|.+..+.+ ...+. . ......|..+
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~-----------------------~~~~~-~------~~~~~~~~~g 51 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTP-----------------------LFTYA-A------AACQDGGASA 51 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCcccc-----------------------ccCcc-c------cCCCCCCCCC
Confidence 7999999999999999999999999998542211 01111 0 0123457789
Q ss_pred ChhHHHHHhccCCCCCCcccccccceeeecccCCeEEEEEEecCCC--CCHHHHHHHHHHHHHCCCCEEEEeecCCCCCC
Q 043420 165 HGTHTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDG--CADADILAAFDDAIADGVDIISISVGSFSAVN 242 (702)
Q Consensus 165 HGThVAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~A~~~gvdVIn~SlG~~~~~~ 242 (702)
|||||||||+|+... .+.||||+|+|+.+|++...+ ++..++++||+||++.|++|||||||......
T Consensus 52 HGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~ 121 (267)
T cd07476 52 HGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTG 121 (267)
T ss_pred cHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCC
Confidence 999999999987521 238999999999999987654 45788999999999999999999999864333
Q ss_pred CccCHHHHHHHHHHhCCCEEEEccCCCCCCCCCcCCCCCceEEeeeeccCcceeeEEEeCCCeEEeeEeecccCCCCcee
Q 043420 243 YFEDTIAIGSFHAMKKGILTSNSAGNSGPDAASLANVAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISINTIDYKGKMF 322 (702)
Q Consensus 243 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~a~~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~ 322 (702)
.....+.+++..+.++|++||+||||+|.....++...+++|+|||++.+
T Consensus 122 ~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------------------ 171 (267)
T cd07476 122 EADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD------------------------------ 171 (267)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC------------------------------
Confidence 44567888888999999999999999998777777788999999986533
Q ss_pred eEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCCCCCcccCcceEEecc
Q 043420 323 PLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDRDVAYSFPLPNSYLDL 402 (702)
Q Consensus 323 ~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~p~~~i~~ 402 (702)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCCCcEEeeccCCCCCCCCCCCCCC
Q 043420 403 YDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISP 482 (702)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 482 (702)
+.++.||++|+.. .||||+|||.+|+++.+.. .
T Consensus 172 -------------------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~~-----------~ 204 (267)
T cd07476 172 -------------------------------GLPLKFSNWGADY-----RKKGILAPGENILGAALGG-----------E 204 (267)
T ss_pred -------------------------------CCeeeecCCCCCC-----CCceEEecCCCceeecCCC-----------C
Confidence 2356789999764 3889999999999987653 6
Q ss_pred ceEeccccchhHHHHHHHHHHHHhCCC----CCHHHHHHHHHhcCcCCCCCC
Q 043420 483 FNIISGTSMSCPHATAAAAYVKSFYPS----WSPAAIKSALMTTATPMSVEA 530 (702)
Q Consensus 483 y~~~sGTSmAaP~VAG~aALl~q~~P~----lsp~~ik~~L~~TA~~~~~~~ 530 (702)
|..++|||||||||||++|||+|++|. ++|++||++|++||+++....
T Consensus 205 ~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~~ 256 (267)
T cd07476 205 VVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPEA 256 (267)
T ss_pred eEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCcc
Confidence 899999999999999999999999987 999999999999999997654
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-45 Score=390.62 Aligned_cols=282 Identities=35% Similarity=0.483 Sum_probs=218.7
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCC--------CCCCCCCCC
Q 043420 92 ESDIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPF--------DFKSPRDSE 163 (702)
Q Consensus 92 G~gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~--------~~~~~~D~~ 163 (702)
|+||+|||||+|||++||+|.+... .+.++...++|..+...... ......|..
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF------------------PNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDAT 62 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC------------------CCCceeeeeECccCCCCcccccccccccccCCCCCCC
Confidence 8999999999999999999985321 23445555555521110000 012245689
Q ss_pred CChhHHHHHhccCCCCCCcccccccceeeecccCCeEEEEEEecCCC-CCHHHHHHHHHHHHHCCCCEEEEeecCCCCCC
Q 043420 164 GHGTHTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDG-CADADILAAFDDAIADGVDIISISVGSFSAVN 242 (702)
Q Consensus 164 gHGThVAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~SlG~~~~~~ 242 (702)
+|||||||+|+|...+. ..+.|+||+|+|+.+|++...+ +...+++++|+|+++++++|||||||... .
T Consensus 63 ~HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~--~ 132 (295)
T cd07474 63 GHGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV--N 132 (295)
T ss_pred CcHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC--C
Confidence 99999999999886431 1238999999999999998544 78889999999999999999999999873 2
Q ss_pred CccCHHHHHHHHHHhCCCEEEEccCCCCCCCCCc--CCCCCceEEeeeeccCcceeeEEEeCCCeEEeeEeecccCCCCc
Q 043420 243 YFEDTIAIGSFHAMKKGILTSNSAGNSGPDAASL--ANVAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISINTIDYKGK 320 (702)
Q Consensus 243 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~a~~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~ 320 (702)
...+.+..++.++.++|++||+||||+|...... +...+++|+||++.....
T Consensus 133 ~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~-------------------------- 186 (295)
T cd07474 133 GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV-------------------------- 186 (295)
T ss_pred CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc--------------------------
Confidence 2457788889999999999999999998765544 456789999998652100
Q ss_pred eeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCCCCCcccCcceEEe
Q 043420 321 MFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDRDVAYSFPLPNSYL 400 (702)
Q Consensus 321 ~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~p~~~i 400 (702)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCC-CCCCCCCCCCCCCcEEeCCCcEEeeccCCCCCCCCCCC
Q 043420 401 DLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSS-RGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPR 479 (702)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS-~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~ 479 (702)
........|++ .|++. ...+||||+|||.+|.+++...
T Consensus 187 ------------------------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~--------- 225 (295)
T cd07474 187 ------------------------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGS--------- 225 (295)
T ss_pred ------------------------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCC---------
Confidence 00022344444 45554 7899999999999999988763
Q ss_pred CCCceEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCCCCCC-CCccCCCCCcCccCc
Q 043420 480 ISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSD-AEFAYGSGHLNPSMA 548 (702)
Q Consensus 480 ~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~ik~~L~~TA~~~~~~~~~~-~~~~~G~G~in~~~A 548 (702)
...|..++|||||||+|||++|||+|++|+|++++||++|++||+++....... .+..+|+|+||+.+|
T Consensus 226 ~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 226 GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDGVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCCCcCChhccCcceeccccC
Confidence 136899999999999999999999999999999999999999999887765432 357899999999987
No 11
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.7e-45 Score=375.86 Aligned_cols=234 Identities=26% Similarity=0.371 Sum_probs=193.4
Q ss_pred cEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCCCCCCCCCCChhHHHHHhc
Q 043420 95 IIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFKSPRDSEGHGTHTSSTAA 174 (702)
Q Consensus 95 V~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVAgiaa 174 (702)
|+|||||||||.+||+|.+. ++..+++. .....|..+|||||||||+
T Consensus 1 V~VavIDsGvd~~hp~l~~~------------------------~~~~~~~~---------~~~~~~~~~HGT~vAgiia 47 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAV------------------------VIARLFFA---------GPGAPAPSAHGTAVASLLA 47 (239)
T ss_pred CEEEEEeCCCCCCCcccccC------------------------ccccccCC---------CCCCCCCCCCHHHHHHHHh
Confidence 78999999999999999743 11112222 1134578899999999999
Q ss_pred cCCCCCCcccccccceeeecccCCeEEEEEEecCCC----CCHHHHHHHHHHHHHCCCCEEEEeecCCCCCCCccCHHHH
Q 043420 175 GGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDG----CADADILAAFDDAIADGVDIISISVGSFSAVNYFEDTIAI 250 (702)
Q Consensus 175 G~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g----~~~~~i~~ai~~A~~~gvdVIn~SlG~~~~~~~~~~~~~~ 250 (702)
|.... . .|+||+|+|+.+|++...+ ++..++++||+||++.|++|||||||.. ....+..
T Consensus 48 ~~~~~----------~-~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~-----~~~~l~~ 111 (239)
T cd05561 48 GAGAQ----------R-PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGP-----PNALLAA 111 (239)
T ss_pred CCCCC----------C-cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCC-----CCHHHHH
Confidence 88532 1 6999999999999988642 6778899999999999999999999975 1356778
Q ss_pred HHHHHHhCCCEEEEccCCCCCCC-CCcCCCCCceEEeeeeccCcceeeEEEeCCCeEEeeEeecccCCCCceeeEEEcCC
Q 043420 251 GSFHAMKKGILTSNSAGNSGPDA-ASLANVAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISINTIDYKGKMFPLIYGGD 329 (702)
Q Consensus 251 a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~a~~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~lv~~~~ 329 (702)
++.++.++|++||+||||+|... ..++...+++|+|++++.+
T Consensus 112 ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~------------------------------------- 154 (239)
T cd05561 112 AVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR------------------------------------- 154 (239)
T ss_pred HHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC-------------------------------------
Confidence 88899999999999999999753 3456677899999986533
Q ss_pred CCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCCCCCcccCcceEEecchhHHHHH
Q 043420 330 APNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDRDVAYSFPLPNSYLDLYDGSKIA 409 (702)
Q Consensus 330 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~ 409 (702)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCCCcEEeeccCCCCCCCCCCCCCCceEeccc
Q 043420 410 SYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGT 489 (702)
Q Consensus 410 ~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~y~~~sGT 489 (702)
+.++.||++|+.. ||.|||++|+++.+.. .|..++||
T Consensus 155 ------------------------~~~~~~s~~g~~~--------di~ApG~~i~~~~~~~-----------~~~~~sGT 191 (239)
T cd05561 155 ------------------------GRLYREANRGAHV--------DFAAPGVDVWVAAPGG-----------GYRYVSGT 191 (239)
T ss_pred ------------------------CCccccCCCCCcc--------eEEccccceecccCCC-----------CEEEeCCH
Confidence 3467899999976 9999999999876543 69999999
Q ss_pred cchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCCCCCCCCccCCCC
Q 043420 490 SMSCPHATAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSG 541 (702)
Q Consensus 490 SmAaP~VAG~aALl~q~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G 541 (702)
|||||||||++|||+|++| +++++||++|++||+++...+ .+..||||
T Consensus 192 S~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~~---~d~~~G~G 239 (239)
T cd05561 192 SFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPPG---RDPVFGYG 239 (239)
T ss_pred HHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCCC---cCCCcCCC
Confidence 9999999999999999999 999999999999999887654 35689988
No 12
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=3.8e-45 Score=384.32 Aligned_cols=259 Identities=24% Similarity=0.334 Sum_probs=188.5
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccC---CCCcccCce--eEeeeeccc---------CCC-------C
Q 043420 93 SDIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQT---SSNFTCNNK--IIGAKFYRS---------DKK-------F 151 (702)
Q Consensus 93 ~gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~---~~~~~~n~k--iig~~~~~~---------~~~-------~ 151 (702)
|+|+|||||||||++||+|.+. .|...-|. +.+-.-|.. -+++++|.. +.. +
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~-------~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~ 73 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGK-------LWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGY 73 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhh-------hhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccccccc
Confidence 6899999999999999999864 23222110 000000110 022333321 000 0
Q ss_pred CCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeecccCCeEEEEEEecCCCCCHHHHHHHHHHHHHCCCCEE
Q 043420 152 SPFDFKSPRDSEGHGTHTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDGCADADILAAFDDAIADGVDII 231 (702)
Q Consensus 152 ~~~~~~~~~D~~gHGThVAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~gvdVI 231 (702)
...+...+.+..+|||||||||++...++ .| +.||||+|+|+.+|++........++++||+||++.|++||
T Consensus 74 g~~~~~~~~~~~gHGT~VAGiIaa~~~n~---~g-----~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~Ii 145 (291)
T cd07483 74 GNNDVNGPISDADHGTHVAGIIAAVRDNG---IG-----IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVI 145 (291)
T ss_pred cccccCCCCCCCCcHHHHHHHHhCcCCCC---Cc-----eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEE
Confidence 01123345578999999999999986432 22 28999999999999986545677889999999999999999
Q ss_pred EEeecCCCCCCCccCHHHHHHHHHHhCCCEEEEccCCCCCCCCC---cC--------CCCCceEEeeeeccCcceeeEEE
Q 043420 232 SISVGSFSAVNYFEDTIAIGSFHAMKKGILTSNSAGNSGPDAAS---LA--------NVAPWTLSVAASTVDRKFVTRVK 300 (702)
Q Consensus 232 n~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~--------~~a~~vitVgA~~~~~~~~~~~~ 300 (702)
|||||... ......+..++..+.++|++||+||||+|..... ++ ...+++|+|||++...
T Consensus 146 N~S~G~~~--~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~------- 216 (291)
T cd07483 146 NMSFGKSF--SPNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY------- 216 (291)
T ss_pred EeCCCCCC--CCccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC-------
Confidence 99999762 1223456778888899999999999999864321 11 1346677777754321
Q ss_pred eCCCeEEeeEeecccCCCCceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEE
Q 043420 301 LGNGEVYEGISINTIDYKGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSV 380 (702)
Q Consensus 301 ~~~g~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i 380 (702)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeCCCCCCCcccCcceEEecchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCC
Q 043420 381 MQGNDDRDVAYSFPLPNSYLDLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPG 460 (702)
Q Consensus 381 ~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG 460 (702)
....++.||++|+. +|||.|||
T Consensus 217 ---------------------------------------------------~~~~~~~~Sn~G~~-------~vdi~APG 238 (291)
T cd07483 217 ---------------------------------------------------ENNLVANFSNYGKK-------NVDVFAPG 238 (291)
T ss_pred ---------------------------------------------------CcccccccCCCCCC-------ceEEEeCC
Confidence 01236889999974 45999999
Q ss_pred CcEEeeccCCCCCCCCCCCCCCceEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCc
Q 043420 461 VDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAAIKSALMTTAT 524 (702)
Q Consensus 461 ~~I~sa~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~ik~~L~~TA~ 524 (702)
.+|+++.+.. .|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 239 ~~i~s~~~~~-----------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 239 ERIYSTTPDN-----------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred CCeEeccCcC-----------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 9999987653 6899999999999999999999999999999999999999984
No 13
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.5e-44 Score=374.82 Aligned_cols=243 Identities=30% Similarity=0.366 Sum_probs=196.7
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCCCC-CCCCCCChhHHHHH
Q 043420 94 DIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFKS-PRDSEGHGTHTSST 172 (702)
Q Consensus 94 gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~-~~D~~gHGThVAgi 172 (702)
||+||||||||+++||+|..... .++.++.+.++|. +. ... ..|..+||||||||
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~-----------------~~~~~i~~~~~~~-~~------~~~~~~~~~~HGT~vagi 56 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL-----------------FKNLRILGEYDFV-DN------SNNTNYTDDDHGTAVLST 56 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc-----------------ccCCceeeeecCc-cC------CCCCCCCCCCchhhhhee
Confidence 79999999999999999952211 1245677788887 22 112 35788999999999
Q ss_pred hccCCCCCCcccccccceeeecccCCeEEEEEEecCCC---CCHHHHHHHHHHHHHCCCCEEEEeecCCCCCCC------
Q 043420 173 AAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDG---CADADILAAFDDAIADGVDIISISVGSFSAVNY------ 243 (702)
Q Consensus 173 aaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~A~~~gvdVIn~SlG~~~~~~~------ 243 (702)
|+|+.. +.+.||||+|+|+.+|+..... .....+++++++|.+.|++|||||||.......
T Consensus 57 ia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~ 126 (261)
T cd07493 57 MAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTY 126 (261)
T ss_pred eeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccc
Confidence 998742 2248999999999999876432 455678999999999999999999998732111
Q ss_pred -----ccCHHHHHHHHHHhCCCEEEEccCCCCCC---CCCcCCCCCceEEeeeeccCcceeeEEEeCCCeEEeeEeeccc
Q 043420 244 -----FEDTIAIGSFHAMKKGILTSNSAGNSGPD---AASLANVAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISINTI 315 (702)
Q Consensus 244 -----~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~---~~~~~~~a~~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~ 315 (702)
....+.+++..+.++|++||+||||+|.. ....+...+++|+|||.+.+
T Consensus 127 ~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~----------------------- 183 (261)
T cd07493 127 ADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN----------------------- 183 (261)
T ss_pred ccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC-----------------------
Confidence 12457778888999999999999999976 34456677999999986432
Q ss_pred CCCCceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCCCCCcccCc
Q 043420 316 DYKGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDRDVAYSFPL 395 (702)
Q Consensus 316 ~~~~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~ 395 (702)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEecchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCCCcEEeeccCCCCCCC
Q 043420 396 PNSYLDLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSE 475 (702)
Q Consensus 396 p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~ 475 (702)
+.++.||++||+. ++++||||+|||.+|++....
T Consensus 184 --------------------------------------~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~------ 217 (261)
T cd07493 184 --------------------------------------GNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD------ 217 (261)
T ss_pred --------------------------------------CCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC------
Confidence 3468899999987 899999999999999985443
Q ss_pred CCCCCCCceEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCc
Q 043420 476 GDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAAIKSALMTTAT 524 (702)
Q Consensus 476 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~ik~~L~~TA~ 524 (702)
..|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 218 -----~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 218 -----GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred -----CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 36899999999999999999999999999999999999999984
No 14
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=2.5e-44 Score=385.78 Aligned_cols=220 Identities=26% Similarity=0.334 Sum_probs=166.7
Q ss_pred CCCCCChhHHHHHhccCCCCCCcccccccceeeecccCCeEEEEEEecCCC---CCHHHHHHHHHHHHHCCCCEEEEeec
Q 043420 160 RDSEGHGTHTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDG---CADADILAAFDDAIADGVDIISISVG 236 (702)
Q Consensus 160 ~D~~gHGThVAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~A~~~gvdVIn~SlG 236 (702)
.|+.+|||||||||||+..++ ..+.||||+|+|+.+|+++... +...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 467899999999999985332 2238999999999999986542 34467999999999999999999999
Q ss_pred CCCCCCCccCHHHHHHHHH-HhCCCEEEEccCCCCCCCCCcCC---CCCceEEeeeeccCcceeeEEEeCCCeEEeeEee
Q 043420 237 SFSAVNYFEDTIAIGSFHA-MKKGILTSNSAGNSGPDAASLAN---VAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISI 312 (702)
Q Consensus 237 ~~~~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~~~~~~---~a~~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~ 312 (702)
...... ....+..++.++ .++|++||+||||+|+...++.. ..+++|+|||..........
T Consensus 254 ~~~~~~-~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~-------------- 318 (412)
T cd04857 254 EATHWP-NSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE-------------- 318 (412)
T ss_pred cCCCCc-cchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc--------------
Confidence 873211 122344444444 46899999999999987666543 46899999996433110000
Q ss_pred cccCCCCceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCCCCCcc
Q 043420 313 NTIDYKGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDRDVAYS 392 (702)
Q Consensus 313 ~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~ 392 (702)
|.+
T Consensus 319 ---------y~~-------------------------------------------------------------------- 321 (412)
T cd04857 319 ---------YSL-------------------------------------------------------------------- 321 (412)
T ss_pred ---------ccc--------------------------------------------------------------------
Confidence 000
Q ss_pred cCcceEEecchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCCCcEEeeccCCCC
Q 043420 393 FPLPNSYLDLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASS 472 (702)
Q Consensus 393 ~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~ 472 (702)
.....+.++.||||||+. ++.+||||+|||+.|.+.-...
T Consensus 322 ------------------------------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~~-- 361 (412)
T cd04857 322 ------------------------------------REKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNWT-- 361 (412)
T ss_pred ------------------------------------ccccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccCC--
Confidence 001125579999999998 9999999999999998752111
Q ss_pred CCCCCCCCCCceEeccccchhHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcCcCC
Q 043420 473 PSEGDPRISPFNIISGTSMSCPHATAAAAYVKS----FYPSWSPAAIKSALMTTATPM 526 (702)
Q Consensus 473 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~lsp~~ik~~L~~TA~~~ 526 (702)
...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 362 -------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 362 -------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred -------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 13689999999999999999999985 468999999999999999875
No 15
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=3.3e-44 Score=372.88 Aligned_cols=247 Identities=31% Similarity=0.373 Sum_probs=195.8
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCCCCCCCCCCChhHHHH
Q 043420 92 ESDIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFKSPRDSEGHGTHTSS 171 (702)
Q Consensus 92 G~gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVAg 171 (702)
|+||+|||||+||+++||+|.+. |++..... +...+.+. +. ......+.|..+|||||||
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~~--------~~~~~~~~-d~---~~~~~~~~d~~~HGT~vag 60 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGGS--------ADHDYNWF-DP---VGNTPLPYDDNGHGTHTMG 60 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCCC--------cccccccc-cC---CCCCCCCCCCCCchhhhhh
Confidence 89999999999999999999854 11111000 00000111 00 0113445678999999999
Q ss_pred HhccCCCCCCcccccccceeeecccCCeEEEEEEecCCCCCHHHHHHHHHHHHH------------CCCCEEEEeecCCC
Q 043420 172 TAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDGCADADILAAFDDAIA------------DGVDIISISVGSFS 239 (702)
Q Consensus 172 iaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~------------~gvdVIn~SlG~~~ 239 (702)
||+|.... +...||||+|+|+.+|++...++...+++++++++++ .|++|||||||...
T Consensus 61 ii~g~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~ 131 (264)
T cd07481 61 TMVGNDGD---------GQQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPS 131 (264)
T ss_pred heeecCCC---------CCceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCC
Confidence 99987532 1127999999999999998877888899999999975 78999999999872
Q ss_pred CCCCccCHHHHHHHHHHhCCCEEEEccCCCCCCCCC---cCCCCCceEEeeeeccCcceeeEEEeCCCeEEeeEeecccC
Q 043420 240 AVNYFEDTIAIGSFHAMKKGILTSNSAGNSGPDAAS---LANVAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISINTID 316 (702)
Q Consensus 240 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~a~~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 316 (702)
. ....+..++..+.++|++||+||||++..... .+...+++|+||+++.+
T Consensus 132 ~---~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------ 184 (264)
T cd07481 132 G---DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN------------------------ 184 (264)
T ss_pred C---CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC------------------------
Confidence 2 34556667777888999999999999865432 45677899999986543
Q ss_pred CCCceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCCCCCcccCcc
Q 043420 317 YKGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDRDVAYSFPLP 396 (702)
Q Consensus 317 ~~~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~p 396 (702)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEecchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCCCcEEeeccCCCCCCCC
Q 043420 397 NSYLDLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEG 476 (702)
Q Consensus 397 ~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~ 476 (702)
+.++.||++||.. .+++||||+|||.+|.++.+..
T Consensus 185 -------------------------------------~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~~------ 219 (264)
T cd07481 185 -------------------------------------DVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPGG------ 219 (264)
T ss_pred -------------------------------------CCCccccCCCCCC--CCCcCceEEECCCCeEEecCCC------
Confidence 3468899999987 7999999999999999988763
Q ss_pred CCCCCCceEeccccchhHHHHHHHHHHHHhCCC--CCHHHHHHHHHhcCc
Q 043420 477 DPRISPFNIISGTSMSCPHATAAAAYVKSFYPS--WSPAAIKSALMTTAT 524 (702)
Q Consensus 477 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~--lsp~~ik~~L~~TA~ 524 (702)
.|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 220 -----~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 220 -----GYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred -----ceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 6899999999999999999999999999 999999999999985
No 16
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-43 Score=367.98 Aligned_cols=257 Identities=29% Similarity=0.422 Sum_probs=205.7
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCCCCCCCCCCChhHHHH
Q 043420 92 ESDIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFKSPRDSEGHGTHTSS 171 (702)
Q Consensus 92 G~gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVAg 171 (702)
|+||+|+|||+||+++||+|.+.... ...+. .. ........|..+|||||||
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~------------------------~~~~~-~~---~~~~~~~~d~~~HGT~vAg 52 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR------------------------FADFV-NT---VNGRTTPYDDNGHGTHVAG 52 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc------------------------ccccc-cc---ccCCCCCCCCCCchHHHHH
Confidence 89999999999999999999864211 11111 00 0012345578899999999
Q ss_pred HhccCCCCCCcccccccceeeecccCCeEEEEEEecCCC-CCHHHHHHHHHHHHHC----CCCEEEEeecCCCCCCCccC
Q 043420 172 TAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDG-CADADILAAFDDAIAD----GVDIISISVGSFSAVNYFED 246 (702)
Q Consensus 172 iaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~----gvdVIn~SlG~~~~~~~~~~ 246 (702)
+|+|...+. .+.+.||||+|+|+.+|++...+ ....++++||+|+++. +++|||||||.........+
T Consensus 53 iiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~~ 125 (264)
T cd07487 53 IIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGED 125 (264)
T ss_pred HHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCCC
Confidence 999986432 12248999999999999998876 6788999999999998 99999999999854456778
Q ss_pred HHHHHHHHHHhCCCEEEEccCCCCCCCC--CcCCCCCceEEeeeeccCcceeeEEEeCCCeEEeeEeecccCCCCceeeE
Q 043420 247 TIAIGSFHAMKKGILTSNSAGNSGPDAA--SLANVAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISINTIDYKGKMFPL 324 (702)
Q Consensus 247 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~a~~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l 324 (702)
.+..++.++.++|++||+||||++.... ..+...+++|+|||++.+..
T Consensus 126 ~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------------------------ 175 (264)
T cd07487 126 PLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------------------------ 175 (264)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC------------------------------
Confidence 8999999999999999999999998765 44557789999999765421
Q ss_pred EEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCCCCCcccCcceEEecchh
Q 043420 325 IYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDRDVAYSFPLPNSYLDLYD 404 (702)
Q Consensus 325 v~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~p~~~i~~~~ 404 (702)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCCCcEEeeccCCCCCCCCCCCCCCce
Q 043420 405 GSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFN 484 (702)
Q Consensus 405 ~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~y~ 484 (702)
....++.||++||+. ++++||||+|||++|+++.+..... .......|.
T Consensus 176 ---------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~--~~~~~~~~~ 224 (264)
T cd07487 176 ---------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNP--GAGVGSGYF 224 (264)
T ss_pred ---------------------------CCccccccccCCCCC--CCCcCCCEEccccceEecccccccc--CCCCCCceE
Confidence 002368899999998 8999999999999999976542110 112235789
Q ss_pred EeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCc
Q 043420 485 IISGTSMSCPHATAAAAYVKSFYPSWSPAAIKSALMTTAT 524 (702)
Q Consensus 485 ~~sGTSmAaP~VAG~aALl~q~~P~lsp~~ik~~L~~TA~ 524 (702)
.++|||||||+|||++|||+|++|.|++.+||++|++||+
T Consensus 225 ~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 225 EMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred eccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999985
No 17
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=1.5e-43 Score=369.81 Aligned_cols=262 Identities=26% Similarity=0.280 Sum_probs=200.9
Q ss_pred hcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCCCCCCCCCC
Q 043420 85 HVKRATTESDIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFKSPRDSEG 164 (702)
Q Consensus 85 ~w~~~~~G~gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~g 164 (702)
+|..+++|+||+|+|||||||++||+|.+...... ++ .....+.+. .. .........|..+
T Consensus 2 aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~---~~-------------~~~~~~~~~-~~--~~~~~~~~~~~~g 62 (273)
T cd07485 2 AWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDG---YD-------------PAVNGYNFV-PN--VGDIDNDVSVGGG 62 (273)
T ss_pred ccccccCCCCcEEEEEeCCCCCCChhhccCCCCCC---cc-------------cccCCcccc-cc--cCCcCCCCCCCCC
Confidence 79999999999999999999999999986511100 00 000000000 00 0001223457889
Q ss_pred ChhHHHHHhccCCCCCCcccccccceeeecccCCeEEEEEEecCCC-CCHHHHHHHHHHHHHCCCCEEEEeecCCCCCCC
Q 043420 165 HGTHTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDG-CADADILAAFDDAIADGVDIISISVGSFSAVNY 243 (702)
Q Consensus 165 HGThVAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~SlG~~~~~~~ 243 (702)
|||||||||+|.........|++ .+.|+||+|+|+.+|++...+ +....++++|++|++.|++|||||||... ...
T Consensus 63 HGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~-~~~ 139 (273)
T cd07485 63 HGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTG-GGI 139 (273)
T ss_pred CHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCC-ccc
Confidence 99999999999764332222221 236799999999999998754 77888999999999999999999999873 233
Q ss_pred ccCHHHHHHHHHHhC-------CCEEEEccCCCCCCCCCcCCCCCceEEeeeeccCcceeeEEEeCCCeEEeeEeecccC
Q 043420 244 FEDTIAIGSFHAMKK-------GILTSNSAGNSGPDAASLANVAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISINTID 316 (702)
Q Consensus 244 ~~~~~~~a~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~a~~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 316 (702)
+...+..++..+.++ |++||+||||++......+...+++|+||+++.+
T Consensus 140 ~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~------------------------ 195 (273)
T cd07485 140 YSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN------------------------ 195 (273)
T ss_pred cCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC------------------------
Confidence 455677778888887 9999999999998776667788999999986533
Q ss_pred CCCceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCCCCCcccCcc
Q 043420 317 YKGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDRDVAYSFPLP 396 (702)
Q Consensus 317 ~~~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~p 396 (702)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEecchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCCC-cEEeeccCCCCCCC
Q 043420 397 NSYLDLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGV-DILASWTQASSPSE 475 (702)
Q Consensus 397 ~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~~ 475 (702)
+.++.||++|+.. ||+|||. .|+++++...
T Consensus 196 -------------------------------------~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~---- 226 (273)
T cd07485 196 -------------------------------------DNKASFSNYGRWV--------DIAAPGVGTILSTVPKLD---- 226 (273)
T ss_pred -------------------------------------CCcCccccCCCce--------EEEeCCCCcccccccccc----
Confidence 3467899999987 9999999 8888776431
Q ss_pred CCCCCCCceEeccccchhHHHHHHHHHHHHhCCC-CCHHHHHHHHHhc
Q 043420 476 GDPRISPFNIISGTSMSCPHATAAAAYVKSFYPS-WSPAAIKSALMTT 522 (702)
Q Consensus 476 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~-lsp~~ik~~L~~T 522 (702)
......|..++|||||||+|||++|||+|++|. |+|+|||++|++|
T Consensus 227 -~~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 227 -GDGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred -CCCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 112246899999999999999999999999999 9999999999986
No 18
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=7.1e-43 Score=362.31 Aligned_cols=246 Identities=29% Similarity=0.375 Sum_probs=206.9
Q ss_pred ccccCchhhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCC
Q 043420 77 WDFMGFSEHVKRATTESDIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDF 156 (702)
Q Consensus 77 ~~~~g~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~ 156 (702)
++.++++.+|+.+ +|+||+|+|||+||+++||+|.. .++...+++. ++ .
T Consensus 13 ~~~~~~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~-----------------------~~~~~~~~~~-~~------~ 61 (260)
T cd07484 13 LDQIGAPKAWDIT-GGSGVTVAVVDTGVDPTHPDLLK-----------------------VKFVLGYDFV-DN------D 61 (260)
T ss_pred ccccChHHHHhhc-CCCCCEEEEEeCCCCCCCccccc-----------------------CCcccceecc-CC------C
Confidence 4567888899999 99999999999999999999852 2233333443 11 1
Q ss_pred CCCCCCCCChhHHHHHhccCCCCCCcccccccceeeecccCCeEEEEEEecCCC-CCHHHHHHHHHHHHHCCCCEEEEee
Q 043420 157 KSPRDSEGHGTHTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDG-CADADILAAFDDAIADGVDIISISV 235 (702)
Q Consensus 157 ~~~~D~~gHGThVAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~Sl 235 (702)
..+.|..+|||||||||++....+. | +.|+||+|+|+.+|++...+ +...+++++|+++++.|++||||||
T Consensus 62 ~~~~d~~~HGT~vagii~~~~~~~~---~-----~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~ 133 (260)
T cd07484 62 SDAMDDNGHGTHVAGIIAAATNNGT---G-----VAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSL 133 (260)
T ss_pred CCCCCCCCcHHHHHHHHhCccCCCC---c-----eEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecC
Confidence 2355788999999999998753321 2 28999999999999998765 7888999999999999999999999
Q ss_pred cCCCCCCCccCHHHHHHHHHHhCCCEEEEccCCCCCCCCCcCCCCCceEEeeeeccCcceeeEEEeCCCeEEeeEeeccc
Q 043420 236 GSFSAVNYFEDTIAIGSFHAMKKGILTSNSAGNSGPDAASLANVAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISINTI 315 (702)
Q Consensus 236 G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~a~~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~ 315 (702)
|... ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.+
T Consensus 134 g~~~----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~----------------------- 186 (260)
T cd07484 134 GGGL----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD----------------------- 186 (260)
T ss_pred CCCC----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC-----------------------
Confidence 9873 4466777888888999999999999999877888889999999986543
Q ss_pred CCCCceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCCCCCcccCc
Q 043420 316 DYKGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDRDVAYSFPL 395 (702)
Q Consensus 316 ~~~~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~ 395 (702)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEecchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCCCcEEeeccCCCCCCC
Q 043420 396 PNSYLDLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSE 475 (702)
Q Consensus 396 p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~ 475 (702)
+.++.||++|+.. |++|||.+|++.....
T Consensus 187 --------------------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~~~~~----- 215 (260)
T cd07484 187 --------------------------------------DKRASFSNYGKWV--------DVSAPGGGILSTTPDG----- 215 (260)
T ss_pred --------------------------------------CCcCCcCCCCCCc--------eEEeCCCCcEeecCCC-----
Confidence 3457889999876 9999999999887653
Q ss_pred CCCCCCCceEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCC
Q 043420 476 GDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAAIKSALMTTATPM 526 (702)
Q Consensus 476 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~ik~~L~~TA~~~ 526 (702)
.|..++|||||||+|||++|||++++| |++++||++|++||+++
T Consensus 216 ------~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 216 ------DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred ------CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 689999999999999999999999999 99999999999999876
No 19
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.2e-43 Score=366.21 Aligned_cols=258 Identities=24% Similarity=0.288 Sum_probs=189.8
Q ss_pred cccCchhhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCCC
Q 043420 78 DFMGFSEHVKRATTESDIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFK 157 (702)
Q Consensus 78 ~~~g~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~ 157 (702)
+.+++.++|+++++|+||+||||||||+..|| |...++. + +. .+. . ....
T Consensus 6 ~~l~~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~------------~~----~~~-~-----~~~~ 55 (298)
T cd07494 6 ALLNATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V------------RV----VLA-P-----GATD 55 (298)
T ss_pred hhcChhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c------------ee----ecC-C-----CCCC
Confidence 46788999999999999999999999999998 7643211 0 00 111 0 0122
Q ss_pred CCCCCCCChhHHHHHhccCCCCCCcccccccceeeecccCCeEEEEEEecCCCCCHHHHHHHHHHHHHCCCCEEEEeecC
Q 043420 158 SPRDSEGHGTHTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDGCADADILAAFDDAIADGVDIISISVGS 237 (702)
Q Consensus 158 ~~~D~~gHGThVAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~gvdVIn~SlG~ 237 (702)
...|+.|||||||+++ .||||+|+|+.+|++.. ..+++++||+||++.|++|||||||.
T Consensus 56 ~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn~SlG~ 114 (298)
T cd07494 56 PACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIISNSWGY 114 (298)
T ss_pred CCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEEeeccc
Confidence 3567889999999865 58999999999999864 55679999999999999999999998
Q ss_pred CCCCCC---------ccCHHHHHHHHHHhCCCEEEEccCCCCCCCCCcCCCCCceEEeeeeccCcceeeEEEeCCCeEEe
Q 043420 238 FSAVNY---------FEDTIAIGSFHAMKKGILTSNSAGNSGPDAASLANVAPWTLSVAASTVDRKFVTRVKLGNGEVYE 308 (702)
Q Consensus 238 ~~~~~~---------~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~a~~vitVgA~~~~~~~~~~~~~~~g~~~~ 308 (702)
...... ....+..++.+|.++|++||+||||++. .++...|++|+|||++.+..- ..
T Consensus 115 ~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~g---------~~-- 180 (298)
T cd07494 115 DLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDEDG---------AR-- 180 (298)
T ss_pred CCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCCC---------cc--
Confidence 632111 1345778888899999999999999875 467888999999998654200 00
Q ss_pred eEeecccCCCCceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCCC
Q 043420 309 GISINTIDYKGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDRD 388 (702)
Q Consensus 309 g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~~ 388 (702)
T Consensus 181 -------------------------------------------------------------------------------- 180 (298)
T cd07494 181 -------------------------------------------------------------------------------- 180 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCcceEEecchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcE------------
Q 043420 389 VAYSFPLPNSYLDLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDL------------ 456 (702)
Q Consensus 389 ~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI------------ 456 (702)
......+.|+|+ ..+++.|||+
T Consensus 181 ------------------------------------------~~~~~~~~~~s~----~~~g~~~pd~~~~~g~~~~~~~ 214 (298)
T cd07494 181 ------------------------------------------RASSYASGFRSK----IYPGRQVPDVCGLVGMLPHAAY 214 (298)
T ss_pred ------------------------------------------cccccccCcccc----cCCCCccCccccccCcCCcccc
Confidence 000000112221 1256677777
Q ss_pred ----EeCCCcEEeeccCCCCCCCCCCCCCCceEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCC
Q 043420 457 ----TAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAAIKSALMTTATPMSVE 529 (702)
Q Consensus 457 ----~APG~~I~sa~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~ik~~L~~TA~~~~~~ 529 (702)
+|||..|.++...... .......|..++|||||||||||++|||+|++|.|++++||.+|++||+++...
T Consensus 215 ~~~~~APG~~i~~~~~~~~~---~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~~~ 288 (298)
T cd07494 215 LMLPVPPGSQLDRSCAAFPD---GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVTKG 288 (298)
T ss_pred cccccCCCcceeccccCCCC---CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCC
Confidence 4799998765432100 011224799999999999999999999999999999999999999999988764
No 20
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.5e-43 Score=369.59 Aligned_cols=262 Identities=24% Similarity=0.242 Sum_probs=188.5
Q ss_pred cEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCCCCCCCCCCChhHHHHHhc
Q 043420 95 IIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFKSPRDSEGHGTHTSSTAA 174 (702)
Q Consensus 95 V~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVAgiaa 174 (702)
.+|||||||||.+||+|... +.....+. .. .....|..||||||||||+
T Consensus 1 p~VaviDtGi~~~hp~l~~~------------------------~~~~~~~~-~~------~~~~~d~~gHGT~vAgiia 49 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPA------------------------LAEDDLDS-DE------PGWTADDLGHGTAVAGLAL 49 (291)
T ss_pred CEEEEecCCCCCCChhhhhh------------------------hccccccc-cC------CCCcCCCCCChHHHHHHHH
Confidence 37999999999999999842 11111222 00 0115689999999999999
Q ss_pred cCCCCCCcccccccceeeecccCCeEEEEEEecCCC-----CCHHHHHHHHHHHHHCC---CCEEEEeecCCCCCCCc-c
Q 043420 175 GGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDG-----CADADILAAFDDAIADG---VDIISISVGSFSAVNYF-E 245 (702)
Q Consensus 175 G~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----~~~~~i~~ai~~A~~~g---vdVIn~SlG~~~~~~~~-~ 245 (702)
+....+ ....|+||+|+|+.+|++...+ ....++++||+||++.+ ++|||||||........ .
T Consensus 50 ~~~~~~--------~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~~ 121 (291)
T cd04847 50 YGDLTL--------PGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGRP 121 (291)
T ss_pred cCcccC--------CCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCCC
Confidence 764321 1227999999999999998863 56778999999999853 49999999998332211 2
Q ss_pred CHHHHHHHH-HHhCCCEEEEccCCCCCCCCCc------------CCCCCceEEeeeeccCcceeeEEEeCCCeEEeeEee
Q 043420 246 DTIAIGSFH-AMKKGILTSNSAGNSGPDAASL------------ANVAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISI 312 (702)
Q Consensus 246 ~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~------------~~~a~~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~ 312 (702)
..+..++++ +.++|++||+||||+|...... +..++++|+|||++.+.....+-.
T Consensus 122 ~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~------------ 189 (291)
T cd04847 122 SSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRAR------------ 189 (291)
T ss_pred CcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCccc------------
Confidence 355555654 5589999999999999775432 345689999999876531100000
Q ss_pred cccCCCCceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCCCCCcc
Q 043420 313 NTIDYKGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDRDVAYS 392 (702)
Q Consensus 313 ~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~ 392 (702)
T Consensus 190 -------------------------------------------------------------------------------- 189 (291)
T cd04847 190 -------------------------------------------------------------------------------- 189 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcceEEecchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCCCcEEeeccCCCC
Q 043420 393 FPLPNSYLDLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASS 472 (702)
Q Consensus 393 ~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~ 472 (702)
.+.......+.||||||.. ++.+||||+|||++|.+.......
T Consensus 190 -----------------------------------~~~~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~ 232 (291)
T cd04847 190 -----------------------------------YSAVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAA 232 (291)
T ss_pred -----------------------------------ccccccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCCc
Confidence 0000001234499999998 999999999999999876542110
Q ss_pred C-------CCCCCCCCCceEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCc
Q 043420 473 P-------SEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAAIKSALMTTAT 524 (702)
Q Consensus 473 ~-------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~ik~~L~~TA~ 524 (702)
. .........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 233 DGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred cCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 0 001223357999999999999999999999999999999999999999984
No 21
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.3e-42 Score=356.04 Aligned_cols=253 Identities=30% Similarity=0.370 Sum_probs=189.7
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCCCCCCCCCCChhHHHHHh
Q 043420 94 DIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFKSPRDSEGHGTHTSSTA 173 (702)
Q Consensus 94 gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVAgia 173 (702)
||+|||||+|||++||+|.+. +...+.|..+. ........|..+|||||||||
T Consensus 1 GV~VaviDsGv~~~hp~l~~~------------------------~~~~~~~~~~~---~~~~~~~~d~~~HGT~vAgii 53 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR------------------------VAQWADFDENR---RISATEVFDAGGHGTHVSGTI 53 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc------------------------cCCceeccCCC---CCCCCCCCCCCCcHHHHHHHH
Confidence 799999999999999999753 11222232110 011234457889999999999
Q ss_pred ccCCCCCCcccccccceeeecccCCeEEEEEEecCCCCCHHHHHHHHHHHHHCCCCEEEEeecCCCCCCCccCHHHHHHH
Q 043420 174 AGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDGCADADILAAFDDAIADGVDIISISVGSFSAVNYFEDTIAIGSF 253 (702)
Q Consensus 174 aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~ 253 (702)
+|+.. .+...||||+|+|+.+|++...++..++++++|+|+++.+++|||||||..... .+++..+++
T Consensus 54 a~~~~---------~~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~---~~~~~~~~~ 121 (254)
T cd07490 54 GGGGA---------KGVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS---EDPLEEAVE 121 (254)
T ss_pred hcCCC---------CCCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC---CcHHHHHHH
Confidence 99863 122379999999999999988778889999999999999999999999988321 566666666
Q ss_pred HHHh-CCCEEEEccCCCCCCCCCcCCCCCceEEeeeeccCcceeeEEEeCCCeEEeeEeecccCCCCceeeEEEcCCCCC
Q 043420 254 HAMK-KGILTSNSAGNSGPDAASLANVAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISINTIDYKGKMFPLIYGGDAPN 332 (702)
Q Consensus 254 ~a~~-~Gi~vV~AAGN~G~~~~~~~~~a~~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~lv~~~~~~~ 332 (702)
.+.+ +|++||+||||+|......+...+++|+|||++.+.....+...
T Consensus 122 ~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~------------------------------- 170 (254)
T cd07490 122 ALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSF------------------------------- 170 (254)
T ss_pred HHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCC-------------------------------
Confidence 5554 69999999999998876777788999999997654210000000
Q ss_pred CCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCCCCCcccCcceEEecchhHHHHHHHH
Q 043420 333 RTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDRDVAYSFPLPNSYLDLYDGSKIASYL 412 (702)
Q Consensus 333 ~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~ 412 (702)
T Consensus 171 -------------------------------------------------------------------------------- 170 (254)
T cd07490 171 -------------------------------------------------------------------------------- 170 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCCCcEEeeccCCCCCCCCCCCCCCceEeccccch
Q 043420 413 NSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMS 492 (702)
Q Consensus 413 ~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~y~~~sGTSmA 492 (702)
........+.+|.. .....||||+|||.+|+++.... .....|..++|||||
T Consensus 171 --------------------g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~-------~~~~~~~~~~GTS~A 222 (254)
T cd07490 171 --------------------GSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGA-------NGDGQYTRLSGTSMA 222 (254)
T ss_pred --------------------cccccccccCCCCC-ccCCcCceEEeccCCeEccccCC-------CCCCCeeecccHHHH
Confidence 00012223334432 25678999999999999865321 122478999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCc
Q 043420 493 CPHATAAAAYVKSFYPSWSPAAIKSALMTTAT 524 (702)
Q Consensus 493 aP~VAG~aALl~q~~P~lsp~~ik~~L~~TA~ 524 (702)
||+|||++|||+|++|+|++++||++|++||+
T Consensus 223 aP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 223 APHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999984
No 22
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=3e-42 Score=356.52 Aligned_cols=232 Identities=31% Similarity=0.424 Sum_probs=196.1
Q ss_pred hcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCCCCCCCCCC
Q 043420 85 HVKRATTESDIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFKSPRDSEG 164 (702)
Q Consensus 85 ~w~~~~~G~gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~g 164 (702)
+|..+++|+||+|||||+||+++||+|.+. +...+.+. + .....|..+
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~------------------------~~~~~~~~-~-------~~~~~d~~~ 64 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR------------------------AIWGADFV-G-------GDPDSDCNG 64 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC------------------------eeeeeecC-C-------CCCCCCCCc
Confidence 777889999999999999999999999743 23333443 1 112567889
Q ss_pred ChhHHHHHhccCCCCCCcccccccceeeecccCCeEEEEEEecCCC-CCHHHHHHHHHHHHHC-----CCCEEEEeecCC
Q 043420 165 HGTHTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDG-CADADILAAFDDAIAD-----GVDIISISVGSF 238 (702)
Q Consensus 165 HGThVAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~-----gvdVIn~SlG~~ 238 (702)
|||||||||+++. .||||+|+|+.+|+++..+ ...++++++|+++++. +++|||||||..
T Consensus 65 HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~ 130 (255)
T cd04077 65 HGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGG 130 (255)
T ss_pred cHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCC
Confidence 9999999999863 6999999999999998875 7788899999999987 489999999987
Q ss_pred CCCCCccCHHHHHHHHHHhCCCEEEEccCCCCCCC-CCcCCCCCceEEeeeeccCcceeeEEEeCCCeEEeeEeecccCC
Q 043420 239 SAVNYFEDTIAIGSFHAMKKGILTSNSAGNSGPDA-ASLANVAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISINTIDY 317 (702)
Q Consensus 239 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~a~~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 317 (702)
. ...+..++.++.++|++||+||||+|... ...+...+++|+||+++.+
T Consensus 131 ~-----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~------------------------- 180 (255)
T cd04077 131 A-----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD------------------------- 180 (255)
T ss_pred C-----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC-------------------------
Confidence 2 45677888889999999999999999765 3455678999999986544
Q ss_pred CCceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCCCCCcccCcce
Q 043420 318 KGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDRDVAYSFPLPN 397 (702)
Q Consensus 318 ~~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~p~ 397 (702)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCCCcEEeeccCCCCCCCCC
Q 043420 398 SYLDLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGD 477 (702)
Q Consensus 398 ~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 477 (702)
+.++.||++||.. ||+|||.+|.++....
T Consensus 181 ------------------------------------~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~------- 209 (255)
T cd04077 181 ------------------------------------DARASFSNYGSCV--------DIFAPGVDILSAWIGS------- 209 (255)
T ss_pred ------------------------------------CCccCcccCCCCC--------cEEeCCCCeEecccCC-------
Confidence 2368899999987 9999999999887632
Q ss_pred CCCCCceEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCcC
Q 043420 478 PRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAAIKSALMTTATP 525 (702)
Q Consensus 478 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~ik~~L~~TA~~ 525 (702)
...|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 210 --~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 210 --DTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred --CCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 1468999999999999999999999999999999999999999974
No 23
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.1e-42 Score=360.47 Aligned_cols=204 Identities=30% Similarity=0.373 Sum_probs=168.1
Q ss_pred CCCCCCChhHHHHHhccCCCCCCcccccccceeeecccCCeEEEEEEecCCCCCHHHHHHHHHHHH----------HCCC
Q 043420 159 PRDSEGHGTHTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDGCADADILAAFDDAI----------ADGV 228 (702)
Q Consensus 159 ~~D~~gHGThVAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~----------~~gv 228 (702)
..+..+|||||||||+|...+ ..|+ .||||+|+|+.+|+++..+...+++++|++||+ .+++
T Consensus 67 ~~~~~~HGT~vAgiiaa~~~~---~~~~-----~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~ 138 (285)
T cd07496 67 VSPSSWHGTHVAGTIAAVTNN---GVGV-----AGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPA 138 (285)
T ss_pred CCCCCCCHHHHHHHHhCcCCC---CCCc-----eeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCC
Confidence 456789999999999998642 2233 899999999999999887778899999999998 4578
Q ss_pred CEEEEeecCCCCCCCccCHHHHHHHHHHhCCCEEEEccCCCCCCC-CCcCCCCCceEEeeeeccCcceeeEEEeCCCeEE
Q 043420 229 DIISISVGSFSAVNYFEDTIAIGSFHAMKKGILTSNSAGNSGPDA-ASLANVAPWTLSVAASTVDRKFVTRVKLGNGEVY 307 (702)
Q Consensus 229 dVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~a~~vitVgA~~~~~~~~~~~~~~~g~~~ 307 (702)
+|||||||.... ....+..++..+.++|++||+||||++... ...+...+++|+|||++.+
T Consensus 139 ~Iin~S~G~~~~---~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--------------- 200 (285)
T cd07496 139 KVINLSLGGDGA---CSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR--------------- 200 (285)
T ss_pred eEEEeCCCCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC---------------
Confidence 999999998722 146678888899999999999999999875 4566678899999986543
Q ss_pred eeEeecccCCCCceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCC
Q 043420 308 EGISINTIDYKGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDR 387 (702)
Q Consensus 308 ~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~ 387 (702)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccCcceEEecchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCCCcEEeec
Q 043420 388 DVAYSFPLPNSYLDLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDILASW 467 (702)
Q Consensus 388 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~ 467 (702)
+.++.||++|+.. ||+|||.+|.+..
T Consensus 201 ----------------------------------------------~~~~~~S~~g~~v--------di~apG~~i~~~~ 226 (285)
T cd07496 201 ----------------------------------------------GQRASYSNYGPAV--------DVSAPGGDCASDV 226 (285)
T ss_pred ----------------------------------------------CCcccccCCCCCC--------CEEeCCCCccccC
Confidence 3468899999987 9999999999876
Q ss_pred cCCCCCC----CCCCCCCCceEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 043420 468 TQASSPS----EGDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAAIKSALMTT 522 (702)
Q Consensus 468 ~~~~~~~----~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~ik~~L~~T 522 (702)
.....+. ........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 227 NGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred CCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 5432110 012223568899999999999999999999999999999999999986
No 24
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=6.7e-42 Score=361.35 Aligned_cols=277 Identities=31% Similarity=0.350 Sum_probs=203.6
Q ss_pred cCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCCCCCCCCCCChh
Q 043420 88 RATTESDIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFKSPRDSEGHGT 167 (702)
Q Consensus 88 ~~~~G~gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGT 167 (702)
++++|+||+|||||+|||++||+|.+... .+.. ..++++.....+. ....|..+|||
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~-~~~~~~~~~~~~~----------~~~~d~~~HGT 58 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN-LFHRKIVRYDSLS----------DTKDDVDGHGT 58 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc-cCcccEEEeeccC----------CCCCCCCCCcc
Confidence 58999999999999999999999986422 0001 1244555544443 12227899999
Q ss_pred HHHHHhccCCCCCCcccccccceeeecccCCeEEEEEEecCCC--CCHHHHHHHHHHHHHCCCCEEEEeecCCCCCCCcc
Q 043420 168 HTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDG--CADADILAAFDDAIADGVDIISISVGSFSAVNYFE 245 (702)
Q Consensus 168 hVAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~A~~~gvdVIn~SlG~~~~~~~~~ 245 (702)
||||||+|......... .+.||||+|+|+.+|++...+ ....++..+++++.+.+++|||||||..... ..
T Consensus 59 ~vAgiia~~~~~~~~~~-----~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~--~~ 131 (293)
T cd04842 59 HVAGIIAGKGNDSSSIS-----LYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNN--GY 131 (293)
T ss_pred hhheeeccCCcCCCccc-----ccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCcc--cc
Confidence 99999999865432211 238999999999999988765 5667789999999999999999999998321 12
Q ss_pred CHHHHHHHHHH-h-CCCEEEEccCCCCCCCC---CcCCCCCceEEeeeeccCcceeeEEEeCCCeEEeeEeecccCCCCc
Q 043420 246 DTIAIGSFHAM-K-KGILTSNSAGNSGPDAA---SLANVAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISINTIDYKGK 320 (702)
Q Consensus 246 ~~~~~a~~~a~-~-~Gi~vV~AAGN~G~~~~---~~~~~a~~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~ 320 (702)
.....++.++. + +|++||+||||+|.... ..+...+++|+|||++......
T Consensus 132 ~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~------------------------ 187 (293)
T cd04842 132 TLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN------------------------ 187 (293)
T ss_pred chHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc------------------------
Confidence 33444444443 3 79999999999997664 5566789999999987653110
Q ss_pred eeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCCCCCcccCcceEEe
Q 043420 321 MFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDRDVAYSFPLPNSYL 400 (702)
Q Consensus 321 ~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~p~~~i 400 (702)
...|..
T Consensus 188 ---------------------~~~~~~----------------------------------------------------- 193 (293)
T cd04842 188 ---------------------GEGGLG----------------------------------------------------- 193 (293)
T ss_pred ---------------------cccccc-----------------------------------------------------
Confidence 000000
Q ss_pred cchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCCCcEEeeccCCCCCCCCCCCC
Q 043420 401 DLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRI 480 (702)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 480 (702)
.......++.||++||+. .+++||||+|||++|+++....... .....
T Consensus 194 ----------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~~~--~~~~~ 241 (293)
T cd04842 194 ----------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGGGI--GDTSD 241 (293)
T ss_pred ----------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCCCC--CCCCh
Confidence 001125689999999998 8999999999999999987542000 11223
Q ss_pred CCceEeccccchhHHHHHHHHHHHHhC-----C---CCCHHHHHHHHHhcCc
Q 043420 481 SPFNIISGTSMSCPHATAAAAYVKSFY-----P---SWSPAAIKSALMTTAT 524 (702)
Q Consensus 481 ~~y~~~sGTSmAaP~VAG~aALl~q~~-----P---~lsp~~ik~~L~~TA~ 524 (702)
..|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 242 ~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 242 SAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred hheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 478899999999999999999999985 4 6677899999999985
No 25
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-41 Score=348.71 Aligned_cols=240 Identities=29% Similarity=0.346 Sum_probs=191.1
Q ss_pred cEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCCCCCCCCCCChhHHHHHhc
Q 043420 95 IIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFKSPRDSEGHGTHTSSTAA 174 (702)
Q Consensus 95 V~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVAgiaa 174 (702)
|+|||||+||+++||+|.+.. +++..+.+. .. .....|..+|||||||||+
T Consensus 1 V~VaviDsGi~~~hp~l~~~~----------------------~~~~~~~~~-~~------~~~~~~~~~HGT~vAgiia 51 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP----------------------KLVPGWNFV-SN------NDPTSDIDGHGTACAGVAA 51 (242)
T ss_pred CEEEEecCCCCCCChhhccCc----------------------CccCCcccc-CC------CCCCCCCCCCHHHHHHHHH
Confidence 789999999999999998530 111122222 10 1134678999999999999
Q ss_pred cCCCCCCcccccccceeeecccCCeEEEEEEecCCC-CCHHHHHHHHHHHHHCCCCEEEEeecCCCCCCCccCHHHHHHH
Q 043420 175 GGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDG-CADADILAAFDDAIADGVDIISISVGSFSAVNYFEDTIAIGSF 253 (702)
Q Consensus 175 G~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~ 253 (702)
|+..+.. .+.||||+|+|+.+|++...+ +...++.+++++|++.+++|||||||...........+..++.
T Consensus 52 g~~~~~~--------~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~ 123 (242)
T cd07498 52 AVGNNGL--------GVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAAT 123 (242)
T ss_pred hccCCCc--------eeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHHH
Confidence 9863221 238999999999999998764 6788899999999999999999999987443444566777777
Q ss_pred HHHh-CCCEEEEccCCCCCCCCCcCCCCCceEEeeeeccCcceeeEEEeCCCeEEeeEeecccCCCCceeeEEEcCCCCC
Q 043420 254 HAMK-KGILTSNSAGNSGPDAASLANVAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISINTIDYKGKMFPLIYGGDAPN 332 (702)
Q Consensus 254 ~a~~-~Gi~vV~AAGN~G~~~~~~~~~a~~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~lv~~~~~~~ 332 (702)
.+.+ +|++||+||||+|......+...+++|+|||++.+
T Consensus 124 ~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~---------------------------------------- 163 (242)
T cd07498 124 YGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN---------------------------------------- 163 (242)
T ss_pred HHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC----------------------------------------
Confidence 8888 99999999999998776667788999999987643
Q ss_pred CCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCCCCCcccCcceEEecchhHHHHHHHH
Q 043420 333 RTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDRDVAYSFPLPNSYLDLYDGSKIASYL 412 (702)
Q Consensus 333 ~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~ 412 (702)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCCCcEEeeccCCCCCCCCCCCCCCceEeccccch
Q 043420 413 NSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMS 492 (702)
Q Consensus 413 ~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~y~~~sGTSmA 492 (702)
+.++.||++||.. |++|||.++.......... .......|..++|||||
T Consensus 164 ---------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~--~~~~~~~~~~~~GTS~A 212 (242)
T cd07498 164 ---------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA--GDYPGGGYGSFSGTSFA 212 (242)
T ss_pred ---------------------CCccCcCCCCCCe--------EEEeCcCCcccCCcccccc--ccCCCCceEeeCcHHHH
Confidence 3468899999987 9999999998875432110 11223578899999999
Q ss_pred hHHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 043420 493 CPHATAAAAYVKSFYPSWSPAAIKSALMTT 522 (702)
Q Consensus 493 aP~VAG~aALl~q~~P~lsp~~ik~~L~~T 522 (702)
||+|||++|||+|++|+|++++||++|++|
T Consensus 213 ap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 213 SPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 999999999999999999999999999976
No 26
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.5e-41 Score=357.12 Aligned_cols=264 Identities=28% Similarity=0.329 Sum_probs=185.1
Q ss_pred ccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCCCCCCCCCCCh
Q 043420 87 KRATTESDIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFKSPRDSEGHG 166 (702)
Q Consensus 87 ~~~~~G~gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHG 166 (702)
+.+++|+||+|||||+|||.+||+|.+.. +...+|. + .....|..+||
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~------------------------~~~~~~~-~-------~~~~~d~~gHG 49 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRD------------------------ITTKSFV-G-------GEDVQDGHGHG 49 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCc------------------------ccCcccC-C-------CCCCCCCCCcH
Confidence 45799999999999999999999998531 1222333 1 11246789999
Q ss_pred hHHHHHhccCCCCCCcccccccceeeecccCCeEEEEEEecCCC-CCHHHHHHHHHHHHHCCCCEEEEeecCCCC-----
Q 043420 167 THTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDG-CADADILAAFDDAIADGVDIISISVGSFSA----- 240 (702)
Q Consensus 167 ThVAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~SlG~~~~----- 240 (702)
|||||||+|+... +...||||+|+|+.+|++...+ ....++++||+||++.|++|||||||....
T Consensus 50 T~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~ 120 (297)
T cd07480 50 THCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQ 120 (297)
T ss_pred HHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccc
Confidence 9999999998643 2236999999999999987654 777779999999999999999999998631
Q ss_pred ---C-CCccCHHHHHHHHH---------------HhCCCEEEEccCCCCCCCCCcCC-----CCCceEEeeeeccCccee
Q 043420 241 ---V-NYFEDTIAIGSFHA---------------MKKGILTSNSAGNSGPDAASLAN-----VAPWTLSVAASTVDRKFV 296 (702)
Q Consensus 241 ---~-~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~G~~~~~~~~-----~a~~vitVgA~~~~~~~~ 296 (702)
. ......+......+ .++|++||+||||+|........ ..+.+++|++....
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~~~---- 196 (297)
T cd07480 121 GWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVGAL---- 196 (297)
T ss_pred cCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEECCC----
Confidence 0 01111222222333 67999999999999865432211 12344444443221
Q ss_pred eEEEeCCCeEEeeEeecccCCCCceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCc
Q 043420 297 TRVKLGNGEVYEGISINTIDYKGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARA 376 (702)
Q Consensus 297 ~~~~~~~g~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa 376 (702)
T Consensus 197 -------------------------------------------------------------------------------- 196 (297)
T cd07480 197 -------------------------------------------------------------------------------- 196 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeeCCCCCCCcccCcceEEecchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcE
Q 043420 377 VGSVMQGNDDRDVAYSFPLPNSYLDLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDL 456 (702)
Q Consensus 377 ~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI 456 (702)
.....|++..+ ....||||
T Consensus 197 ---------------------------------------------------------~~~~~~~~~~~----~~~~~~dv 215 (297)
T cd07480 197 ---------------------------------------------------------GRTGNFSAVAN----FSNGEVDI 215 (297)
T ss_pred ---------------------------------------------------------CCCCCccccCC----CCCCceEE
Confidence 01122222222 22357899
Q ss_pred EeCCCcEEeeccCCCCCCCCCCCCCCceEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCCCC-CC-C
Q 043420 457 TAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEAN-SD-A 534 (702)
Q Consensus 457 ~APG~~I~sa~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~ik~~L~~TA~~~~~~~~-~~-~ 534 (702)
+|||.+|+++.+.. .|..++|||||||+|||++|||+|++|.+++.+++.+|+........... +. .
T Consensus 216 ~ApG~~i~s~~~~~-----------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 284 (297)
T cd07480 216 AAPGVDIVSAAPGG-----------GYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTTQFAPGLD 284 (297)
T ss_pred EeCCCCeEeecCCC-----------cEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccCCCCCCCC
Confidence 99999999987654 69999999999999999999999999999998888888743222111110 11 3
Q ss_pred CccCCCCCcCccC
Q 043420 535 EFAYGSGHLNPSM 547 (702)
Q Consensus 535 ~~~~G~G~in~~~ 547 (702)
..++|+|++++.+
T Consensus 285 ~~~~g~G~~~~~~ 297 (297)
T cd07480 285 LPDRGVGLGLAPA 297 (297)
T ss_pred hhhcCCceeecCC
Confidence 5689999998753
No 27
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.6e-41 Score=348.78 Aligned_cols=248 Identities=17% Similarity=0.149 Sum_probs=180.5
Q ss_pred cCchhhcccC-CCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCCCC
Q 043420 80 MGFSEHVKRA-TTESDIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFKS 158 (702)
Q Consensus 80 ~g~~~~w~~~-~~G~gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~ 158 (702)
++++.+|+.. ..|+||+|+|||+|||.+||+|.+.... . .. ...
T Consensus 2 i~~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~------------------------~--~~---------~~~ 46 (277)
T cd04843 2 INARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT------------------------L--IS---------GLT 46 (277)
T ss_pred CChHHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc------------------------c--cC---------CCC
Confidence 4677899884 4599999999999999999999854110 0 00 011
Q ss_pred CCCCCCChhHHHHHhccCCCCCCcccccccceeeecccCCeEEEEEEecCCCCCHHHHHHHHHHHHH----CCCCEEEEe
Q 043420 159 PRDSEGHGTHTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDGCADADILAAFDDAIA----DGVDIISIS 234 (702)
Q Consensus 159 ~~D~~gHGThVAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~----~gvdVIn~S 234 (702)
+.|+.+|||||||||++..+ .+|. .||||+|+|+.+|++. .++++++|++|++ .++.+||||
T Consensus 47 ~~d~~gHGT~VAGiIaa~~n----~~G~-----~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v~~in~s 112 (277)
T cd04843 47 DQADSDHGTAVLGIIVAKDN----GIGV-----TGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDVILLEMQ 112 (277)
T ss_pred CCCCCCCcchhheeeeeecC----CCce-----eeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCEEEEEcc
Confidence 45788999999999998631 2233 8999999999999975 3456677777776 346678999
Q ss_pred ecCCCCCC-----CccCHHHHHHHHHHhCCCEEEEccCCCCCCCCCcC-------------CCCCceEEeeeeccCccee
Q 043420 235 VGSFSAVN-----YFEDTIAIGSFHAMKKGILTSNSAGNSGPDAASLA-------------NVAPWTLSVAASTVDRKFV 296 (702)
Q Consensus 235 lG~~~~~~-----~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~-------------~~a~~vitVgA~~~~~~~~ 296 (702)
||...... .....+..++.++.++|++||+||||++....... ...+++|+|||++.+.
T Consensus 113 ~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~~--- 189 (277)
T cd04843 113 TGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSSTT--- 189 (277)
T ss_pred ccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCCC---
Confidence 99863211 12334556777888999999999999986531111 1235788888765331
Q ss_pred eEEEeCCCeEEeeEeecccCCCCceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCc
Q 043420 297 TRVKLGNGEVYEGISINTIDYKGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARA 376 (702)
Q Consensus 297 ~~~~~~~g~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa 376 (702)
T Consensus 190 -------------------------------------------------------------------------------- 189 (277)
T cd04843 190 -------------------------------------------------------------------------------- 189 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeeCCCCCCCcccCcceEEecchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcE
Q 043420 377 VGSVMQGNDDRDVAYSFPLPNSYLDLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDL 456 (702)
Q Consensus 377 ~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI 456 (702)
...++.||++|+.. ||
T Consensus 190 --------------------------------------------------------~~~~~~fSn~G~~v--------di 205 (277)
T cd04843 190 --------------------------------------------------------GHTRLAFSNYGSRV--------DV 205 (277)
T ss_pred --------------------------------------------------------CCccccccCCCCcc--------ce
Confidence 01268999999987 99
Q ss_pred EeCCCcEEeeccCCCCCCCCCCCCCCceEeccccchhHHHHHHHHHHHH----h-CCCCCHHHHHHHHHhcCc
Q 043420 457 TAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKS----F-YPSWSPAAIKSALMTTAT 524 (702)
Q Consensus 457 ~APG~~I~sa~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~P~lsp~~ik~~L~~TA~ 524 (702)
.|||++|+++........ .......|..++|||||||||||++|||++ + +|+|+|+|||++|+.|++
T Consensus 206 ~APG~~i~s~~~~~~~~~-~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 206 YGWGENVTTTGYGDLQDL-GGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred EcCCCCeEecCCCCcccc-cCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 999999999986542100 011112347899999999999999999975 3 499999999999999974
No 28
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-40 Score=343.69 Aligned_cols=247 Identities=30% Similarity=0.397 Sum_probs=191.2
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCCCCCCCcccc---ccCCCCcccCcee--EeeeecccCCCCCCCCCCCCCCCCCChh
Q 043420 93 SDIIVGMLDTGIWPESQSFSDENFGPPPKKWKGS---CQTSSNFTCNNKI--IGAKFYRSDKKFSPFDFKSPRDSEGHGT 167 (702)
Q Consensus 93 ~gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~---~~~~~~~~~n~ki--ig~~~~~~~~~~~~~~~~~~~D~~gHGT 167 (702)
+||+|||||||||++||+|.+. .|... +..+.+...+..+ ...+.|. ....++.|..+|||
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~d~~~HGT 67 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGIDDDGNGYVDDIYGWNFV-------NNDNDPMDDNGHGT 67 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCcccCCCCcccCCCccccc-------CCCCCCCCCCCcHH
Confidence 7899999999999999999864 23211 1111111111111 0011111 11345678899999
Q ss_pred HHHHHhccCCCCCCcccccccceeeecccCCeEEEEEEecCCC-CCHHHHHHHHHHHHHCCCCEEEEeecCCCCCCCccC
Q 043420 168 HTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDG-CADADILAAFDDAIADGVDIISISVGSFSAVNYFED 246 (702)
Q Consensus 168 hVAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~SlG~~~~~~~~~~ 246 (702)
||||||+|....+.. +.|+||+|+|+.+|++...+ ++..+++++|++|++.+++|||+|||.... ..
T Consensus 68 ~va~ii~~~~~~~~~--------~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~----~~ 135 (259)
T cd07473 68 HVAGIIGAVGNNGIG--------IAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP----SQ 135 (259)
T ss_pred HHHHHHHCcCCCCCc--------eEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC----CH
Confidence 999999998643221 38999999999999998876 888899999999999999999999998822 56
Q ss_pred HHHHHHHHHHhCCCEEEEccCCCCCCC---CCcCC--CCCceEEeeeeccCcceeeEEEeCCCeEEeeEeecccCCCCce
Q 043420 247 TIAIGSFHAMKKGILTSNSAGNSGPDA---ASLAN--VAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISINTIDYKGKM 321 (702)
Q Consensus 247 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~--~a~~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 321 (702)
.+..++.++.++|++||+||||+|... ..++. ..+++|+||+.+.+
T Consensus 136 ~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~----------------------------- 186 (259)
T cd07473 136 ALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN----------------------------- 186 (259)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC-----------------------------
Confidence 778888899999999999999998762 23333 35789999986533
Q ss_pred eeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCCCCCcccCcceEEec
Q 043420 322 FPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDRDVAYSFPLPNSYLD 401 (702)
Q Consensus 322 ~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~p~~~i~ 401 (702)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCCCcEEeeccCCCCCCCCCCCCC
Q 043420 402 LYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRIS 481 (702)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 481 (702)
+.++.||++||. +||+.|||.++++.... .
T Consensus 187 --------------------------------~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~-----------~ 216 (259)
T cd07473 187 --------------------------------DALASFSNYGKK-------TVDLAAPGVDILSTSPG-----------G 216 (259)
T ss_pred --------------------------------CCcCcccCCCCC-------CcEEEeccCCeEeccCC-----------C
Confidence 345679999985 46999999999986654 3
Q ss_pred CceEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCc
Q 043420 482 PFNIISGTSMSCPHATAAAAYVKSFYPSWSPAAIKSALMTTAT 524 (702)
Q Consensus 482 ~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~ik~~L~~TA~ 524 (702)
.|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 217 ~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 217 GYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred cEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 6899999999999999999999999999999999999999984
No 29
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=2.6e-40 Score=336.46 Aligned_cols=226 Identities=34% Similarity=0.467 Sum_probs=187.5
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCCCCCCCCCCChhHHHHHh
Q 043420 94 DIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFKSPRDSEGHGTHTSSTA 173 (702)
Q Consensus 94 gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVAgia 173 (702)
||+|||||+||+++||+|.+. ++...+|. .. ......|..+|||||||||
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~------------------------~~~~~~~~-~~-----~~~~~~~~~~HGT~vA~ii 50 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN------------------------IVGGANFT-GD-----DNNDYQDGNGHGTHVAGII 50 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc------------------------ccCccccc-CC-----CCCCCCCCCCCHHHHHHHH
Confidence 799999999999999999853 22223333 11 0124457889999999999
Q ss_pred ccCCCCCCcccccccceeeecccCCeEEEEEEecCCC-CCHHHHHHHHHHHHHCCCCEEEEeecCCCCCCCccCHHHHHH
Q 043420 174 AGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDG-CADADILAAFDDAIADGVDIISISVGSFSAVNYFEDTIAIGS 252 (702)
Q Consensus 174 aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~SlG~~~~~~~~~~~~~~a~ 252 (702)
++..... .+.|+||+|+|+.+|++...+ ....++++++++|++.|++|||||||... ....+..++
T Consensus 51 ~~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~----~~~~~~~~~ 117 (229)
T cd07477 51 AALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS----DSPALREAI 117 (229)
T ss_pred hcccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC----CCHHHHHHH
Confidence 9975321 238999999999999998776 67789999999999999999999999872 234566777
Q ss_pred HHHHhCCCEEEEccCCCCCCCCCc--CCCCCceEEeeeeccCcceeeEEEeCCCeEEeeEeecccCCCCceeeEEEcCCC
Q 043420 253 FHAMKKGILTSNSAGNSGPDAASL--ANVAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISINTIDYKGKMFPLIYGGDA 330 (702)
Q Consensus 253 ~~a~~~Gi~vV~AAGN~G~~~~~~--~~~a~~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~lv~~~~~ 330 (702)
..+.++|++||+||||++...... +...+++|+||+++.+
T Consensus 118 ~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~-------------------------------------- 159 (229)
T cd07477 118 KKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN-------------------------------------- 159 (229)
T ss_pred HHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC--------------------------------------
Confidence 788899999999999999776554 7788999999987644
Q ss_pred CCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCCCCCcccCcceEEecchhHHHHHH
Q 043420 331 PNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDRDVAYSFPLPNSYLDLYDGSKIAS 410 (702)
Q Consensus 331 ~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~ 410 (702)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCCCcEEeeccCCCCCCCCCCCCCCceEecccc
Q 043420 411 YLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTS 490 (702)
Q Consensus 411 ~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~y~~~sGTS 490 (702)
+.+..||++|+.. |+.|||.+|++++... .|..++|||
T Consensus 160 -----------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~~-----------~~~~~~GTS 197 (229)
T cd07477 160 -----------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPNN-----------DYAYLSGTS 197 (229)
T ss_pred -----------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCCC-----------CEEEEccHH
Confidence 2356899999876 9999999999987653 688999999
Q ss_pred chhHHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 043420 491 MSCPHATAAAAYVKSFYPSWSPAAIKSALMTT 522 (702)
Q Consensus 491 mAaP~VAG~aALl~q~~P~lsp~~ik~~L~~T 522 (702)
||||+|||++|||+|++|++++.+||++|++|
T Consensus 198 ~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 198 MATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999986
No 30
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=3.1e-41 Score=354.14 Aligned_cols=276 Identities=33% Similarity=0.482 Sum_probs=209.9
Q ss_pred EEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCCCCCCCCCCChhHHHHHhcc
Q 043420 96 IVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFKSPRDSEGHGTHTSSTAAG 175 (702)
Q Consensus 96 ~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVAgiaaG 175 (702)
+|||||+|||++||+|....+ ...++.+.+.|. ++. .......|..+|||||||||+|
T Consensus 1 ~V~viDtGid~~h~~~~~~~~------------------~~~~~~~~~~~~-~~~---~~~~~~~~~~~HGT~va~ii~~ 58 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNF------------------IWSKVPGGYNFV-DGN---PNPSPSDDDNGHGTHVAGIIAG 58 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTE------------------EEEEEEEEEETT-TTB---STTTSSSTSSSHHHHHHHHHHH
T ss_pred CEEEEcCCcCCCChhHccCCc------------------ccccccceeecc-CCC---CCcCccccCCCccchhhhhccc
Confidence 699999999999999982211 112334455565 221 1133456788999999999999
Q ss_pred CCCCCCcccccccceeeecccCCeEEEEEEecCCCCCHHHHHHHHHHHH-HCCCCEEEEeecCCC--CCCCccCHHHHHH
Q 043420 176 GLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDGCADADILAAFDDAI-ADGVDIISISVGSFS--AVNYFEDTIAIGS 252 (702)
Q Consensus 176 ~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~-~~gvdVIn~SlG~~~--~~~~~~~~~~~a~ 252 (702)
.. . .+..+ ..|+||+|+|+.+|++...+....+++++|++++ +.+++|||||||... ........+..++
T Consensus 59 ~~-~-~~~~~-----~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~ 131 (282)
T PF00082_consen 59 NG-G-NNGPG-----INGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAI 131 (282)
T ss_dssp TT-S-SSSSS-----ETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHH
T ss_pred cc-c-ccccc-----cccccccccccccccccccccccccccchhhhhhhccCCcccccccccccccccccccccccccc
Confidence 86 2 22222 2899999999999998776677888999999999 899999999999831 1112334456667
Q ss_pred HHHHhCCCEEEEccCCCCCCCCC---cCCCCCceEEeeeeccCcceeeEEEeCCCeEEeeEeecccCCCCceeeEEEcCC
Q 043420 253 FHAMKKGILTSNSAGNSGPDAAS---LANVAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISINTIDYKGKMFPLIYGGD 329 (702)
Q Consensus 253 ~~a~~~Gi~vV~AAGN~G~~~~~---~~~~a~~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~lv~~~~ 329 (702)
..+.++|+++|+||||+|..... .+...+++|+||+++..
T Consensus 132 ~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~------------------------------------- 174 (282)
T PF00082_consen 132 DYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN------------------------------------- 174 (282)
T ss_dssp HHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT-------------------------------------
T ss_pred ccccccCcceeeccccccccccccccccccccccccccccccc-------------------------------------
Confidence 78889999999999999876643 44556889999986533
Q ss_pred CCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCCCCCcccCcceEEecchhHHHHH
Q 043420 330 APNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDRDVAYSFPLPNSYLDLYDGSKIA 409 (702)
Q Consensus 330 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~ 409 (702)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCCCcEEeeccCCCCCCCCCCCCCCceEeccc
Q 043420 410 SYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGT 489 (702)
Q Consensus 410 ~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~y~~~sGT 489 (702)
+.++.||++|+.. ..+++||||+|||.+|++.++... ...|..++||
T Consensus 175 ------------------------~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~~--------~~~~~~~~GT 221 (282)
T PF00082_consen 175 ------------------------GQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGSD--------RGSYTSFSGT 221 (282)
T ss_dssp ------------------------SSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTTE--------SEEEEEEESH
T ss_pred ------------------------ccccccccccccc-cccccccccccccccccccccccc--------cccccccCcC
Confidence 2358899997543 278999999999999988886531 0247789999
Q ss_pred cchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCCCCCCCCccCCCCCcCccCcCC
Q 043420 490 SMSCPHATAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLNPSMAVN 550 (702)
Q Consensus 490 SmAaP~VAG~aALl~q~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~ 550 (702)
|||||+|||++|||+|++|+|++.+||.+|++||.++...........||||+||+++|++
T Consensus 222 S~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 222 SFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTNGEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETTSSSSHHHHTTSBE-HHHHHH
T ss_pred CchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCCCCCCCCCccCChhCHHHHhC
Confidence 9999999999999999999999999999999999998833211146788999999999874
No 31
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.7e-40 Score=338.14 Aligned_cols=216 Identities=20% Similarity=0.179 Sum_probs=167.7
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCCCCCCCCCCChhHHHH
Q 043420 92 ESDIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFKSPRDSEGHGTHTSS 171 (702)
Q Consensus 92 G~gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVAg 171 (702)
+++|+|||||||||++||+|.+. ++..+.|...............|..||||||||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~------------------------i~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAg 57 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK------------------------IIGGKSFSPYEGDGNKVSPYYVSADGHGTAMAR 57 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc------------------------cccCCCCCCCCCCcccCCCCCCCCCCcHHHHHH
Confidence 78999999999999999999843 222223331100000001122478899999999
Q ss_pred HhccCCCCCCcccccccceeeecccCCeEEEEEEecCCC-------CCHHHHHHHHHHHHHCCCCEEEEeecCCCCC--C
Q 043420 172 TAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDG-------CADADILAAFDDAIADGVDIISISVGSFSAV--N 242 (702)
Q Consensus 172 iaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-------~~~~~i~~ai~~A~~~gvdVIn~SlG~~~~~--~ 242 (702)
||+ |+||+|+|+.+|++...+ ++...+++||+||+++|+||||||||..... .
T Consensus 58 iI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~ 119 (247)
T cd07491 58 MIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDND 119 (247)
T ss_pred HHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccccc
Confidence 995 679999999999987643 4567899999999999999999999987321 1
Q ss_pred CccCHHHHHHHHHHhCCCEEEEccCCCCCCCC-Cc--CCCCCceEEeeeeccCcceeeEEEeCCCeEEeeEeecccCCCC
Q 043420 243 YFEDTIAIGSFHAMKKGILTSNSAGNSGPDAA-SL--ANVAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISINTIDYKG 319 (702)
Q Consensus 243 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~--~~~a~~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ 319 (702)
.....+..++.+|.++|++||+||||+|.... .+ +...+++|+|||++.+
T Consensus 120 ~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~~--------------------------- 172 (247)
T cd07491 120 NDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADED--------------------------- 172 (247)
T ss_pred cchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCCC---------------------------
Confidence 23567888899999999999999999997654 33 3467899999997654
Q ss_pred ceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCCCCCcccCcceEE
Q 043420 320 KMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDRDVAYSFPLPNSY 399 (702)
Q Consensus 320 ~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~p~~~ 399 (702)
T Consensus 173 -------------------------------------------------------------------------------- 172 (247)
T cd07491 173 -------------------------------------------------------------------------------- 172 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCCCcEEeeccCCCCCCCCCCC
Q 043420 400 LDLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPR 479 (702)
Q Consensus 400 i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~ 479 (702)
+.++.||++|+.. |+.|||++|+++.... .
T Consensus 173 ----------------------------------g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~--------~ 202 (247)
T cd07491 173 ----------------------------------GGADAPVGDEDRV--------DYILPGENVEARDRPP--------L 202 (247)
T ss_pred ----------------------------------CCCccccCCCCcc--------eEEeCCCceecCCcCC--------C
Confidence 2357799999887 9999999999886521 0
Q ss_pred CCCceEeccccchhHHHHHHHHHHHHh
Q 043420 480 ISPFNIISGTSMSCPHATAAAAYVKSF 506 (702)
Q Consensus 480 ~~~y~~~sGTSmAaP~VAG~aALl~q~ 506 (702)
...|..++|||||||||||++|||++.
T Consensus 203 ~~~~~~~sGTS~Atp~vaGvaAL~l~~ 229 (247)
T cd07491 203 SNSFVTHTGSSVATALAAGLAALILYC 229 (247)
T ss_pred CCCeeeeccHHHHHHHHHHHHHHHHHH
Confidence 146899999999999999999999985
No 32
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=1.8e-39 Score=343.06 Aligned_cols=252 Identities=25% Similarity=0.309 Sum_probs=176.1
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCCCCCCCCCCChhHHHHHh
Q 043420 94 DIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFKSPRDSEGHGTHTSSTA 173 (702)
Q Consensus 94 gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVAgia 173 (702)
.|+|||||||||++||+|.+.-... .+ .+.....+.........+.....|..||||||||+|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~----~~-------------~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgii 63 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSY----SK-------------NLVPKGGYDGKEAGETGDINDIVDKLGHGTAVAGQI 63 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccc----cc-------------ccccCCCcCCccccccCCCCcCCCCCCcHhHHHHHH
Confidence 4899999999999999998531100 00 000000000000000111234457899999999999
Q ss_pred ccCCCCCCcccccccceeeecccCCeEEEEEEecCCCC-CHHHHHHHHHHHHHCCCCEEEEeecCCCCCCC-------cc
Q 043420 174 AGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDGC-ADADILAAFDDAIADGVDIISISVGSFSAVNY-------FE 245 (702)
Q Consensus 174 aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~-~~~~i~~ai~~A~~~gvdVIn~SlG~~~~~~~-------~~ 245 (702)
+|+... .||||+|+|+.+|+++..+. ...+++++|++|++.+++|||||||....... ..
T Consensus 64 a~~~~~------------~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~ 131 (294)
T cd07482 64 AANGNI------------KGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEY 131 (294)
T ss_pred hcCCCC------------ceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhh
Confidence 987421 59999999999999987764 88899999999999999999999998632111 12
Q ss_pred CHHHHHHHHHHhCCCEEEEccCCCCCCCC----------------------CcCCCCCceEEeeeeccCcceeeEEEeCC
Q 043420 246 DTIAIGSFHAMKKGILTSNSAGNSGPDAA----------------------SLANVAPWTLSVAASTVDRKFVTRVKLGN 303 (702)
Q Consensus 246 ~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~----------------------~~~~~a~~vitVgA~~~~~~~~~~~~~~~ 303 (702)
..+..++..+.++|++||+||||+|.... ..+...+++|+|||++.+
T Consensus 132 ~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~~~----------- 200 (294)
T cd07482 132 NAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATDNN----------- 200 (294)
T ss_pred HHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEeeCCC-----------
Confidence 34666777788999999999999986541 112234555555554322
Q ss_pred CeEEeeEeecccCCCCceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEee
Q 043420 304 GEVYEGISINTIDYKGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQG 383 (702)
Q Consensus 304 g~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~ 383 (702)
T Consensus 201 -------------------------------------------------------------------------------- 200 (294)
T cd07482 201 -------------------------------------------------------------------------------- 200 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCcccCcceEEecchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCCCcE
Q 043420 384 NDDRDVAYSFPLPNSYLDLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDI 463 (702)
Q Consensus 384 ~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I 463 (702)
+.++.||++|+.. +|++|||+++
T Consensus 201 --------------------------------------------------~~~~~~S~~g~~~-------~~~~apG~~~ 223 (294)
T cd07482 201 --------------------------------------------------GNLSSFSNYGNSR-------IDLAAPGGDF 223 (294)
T ss_pred --------------------------------------------------CCcCccccCCCCc-------ceEECCCCCc
Confidence 4467899988753 4999999988
Q ss_pred EeeccCCCCC--CC---------CCCCCCCceEeccccchhHHHHHHHHHHHHhCCCCCH-HHHHHHHHhc
Q 043420 464 LASWTQASSP--SE---------GDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSP-AAIKSALMTT 522 (702)
Q Consensus 464 ~sa~~~~~~~--~~---------~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp-~~ik~~L~~T 522 (702)
.......... .. .......|..++|||||||+|||++|||+|++|.|++ .|||++|++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 224 LLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred ccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 5322111000 00 1123457899999999999999999999999999999 9999999987
No 33
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=5.5e-40 Score=347.42 Aligned_cols=252 Identities=21% Similarity=0.157 Sum_probs=184.4
Q ss_pred ccCchhhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCCCC
Q 043420 79 FMGFSEHVKRATTESDIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFKS 158 (702)
Q Consensus 79 ~~g~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~ 158 (702)
-+++..+|+.+++|+||+|+|||||||+.||+|.+.... ...++|. ++ .....
T Consensus 25 ~~~~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~----------------------~~~~~~~-~~----~~~~~ 77 (297)
T cd04059 25 DLNVTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP----------------------EASYDFN-DN----DPDPT 77 (297)
T ss_pred CcccHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc----------------------ccccccc-CC----CCCCC
Confidence 467788999999999999999999999999999854110 0112222 11 00111
Q ss_pred C--CCCCCChhHHHHHhccCCCCCCcccccccceeeecccCCeEEEEEEecCCCCCHHHHHHHHHHHHHCCCCEEEEeec
Q 043420 159 P--RDSEGHGTHTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDGCADADILAAFDDAIADGVDIISISVG 236 (702)
Q Consensus 159 ~--~D~~gHGThVAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~gvdVIn~SlG 236 (702)
+ .|..+|||||||||+|+..... | ..||||+|+|+.+|++... .....+..++.++.+ .++|||||||
T Consensus 78 ~~~~~~~gHGT~vAgiiag~~~~~~---~-----~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~Vin~S~g 147 (297)
T cd04059 78 PRYDDDNSHGTRCAGEIAAVGNNGI---C-----GVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDIYSNSWG 147 (297)
T ss_pred CccccccccCcceeeEEEeecCCCc---c-----cccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceEEECCCC
Confidence 2 2788999999999999863221 2 2799999999999998764 334445566655544 5699999999
Q ss_pred CCCCCC---CccCHHHHHHHHHHh-----CCCEEEEccCCCCCCCCC----cCCCCCceEEeeeeccCcceeeEEEeCCC
Q 043420 237 SFSAVN---YFEDTIAIGSFHAMK-----KGILTSNSAGNSGPDAAS----LANVAPWTLSVAASTVDRKFVTRVKLGNG 304 (702)
Q Consensus 237 ~~~~~~---~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~----~~~~a~~vitVgA~~~~~~~~~~~~~~~g 304 (702)
...... .....+..++.++.. +|++||+||||+|..... .....+++|+|||++.+
T Consensus 148 ~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~------------ 215 (297)
T cd04059 148 PDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN------------ 215 (297)
T ss_pred CCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC------------
Confidence 873221 122334445555553 699999999999973221 12356889999987643
Q ss_pred eEEeeEeecccCCCCceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeC
Q 043420 305 EVYEGISINTIDYKGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGN 384 (702)
Q Consensus 305 ~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~ 384 (702)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccCcceEEecchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCCCc--
Q 043420 385 DDRDVAYSFPLPNSYLDLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVD-- 462 (702)
Q Consensus 385 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~-- 462 (702)
+.++.||++|+.. ++.|||..
T Consensus 216 -------------------------------------------------g~~~~~s~~g~~~--------~~~a~g~~~~ 238 (297)
T cd04059 216 -------------------------------------------------GVRASYSEVGSSV--------LASAPSGGSG 238 (297)
T ss_pred -------------------------------------------------CCCcCCCCCCCcE--------EEEecCCCCC
Confidence 3467899999987 89999987
Q ss_pred -----EEeeccCCCCCCCCCCCCCCceEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCc
Q 043420 463 -----ILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAAIKSALMTTAT 524 (702)
Q Consensus 463 -----I~sa~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~ik~~L~~TA~ 524 (702)
|+++.... ....|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 239 ~~~~~i~~~~~~~--------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 239 NPEASIVTTDLGG--------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred CCCCceEeCCCCC--------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 66554431 0135788999999999999999999999999999999999999985
No 34
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.8e-39 Score=325.58 Aligned_cols=221 Identities=22% Similarity=0.247 Sum_probs=174.0
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCCCCCCCCCCChhHHHHHh
Q 043420 94 DIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFKSPRDSEGHGTHTSSTA 173 (702)
Q Consensus 94 gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVAgia 173 (702)
||+|||||||||++||+|.+.-. ..+.+. .+.. ..+.....|..||||||||||
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~------------------------~~~~~~-~~~~-~~~~~~~~d~~gHGT~vAgii 54 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLAL------------------------DGEVTI-DLEI-IVVSAEGGDKDGHGTACAGII 54 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccc------------------------cccccc-cccc-ccCCCCCCCCCCcHHHHHHHH
Confidence 79999999999999999985311 011110 0000 001234457889999999999
Q ss_pred ccCCCCCCcccccccceeeecccCCeEEEEEEecCCC-CCHHHHHHHHHHHHHCCCCEEEEeecCCCCCCCccCHHHHHH
Q 043420 174 AGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDG-CADADILAAFDDAIADGVDIISISVGSFSAVNYFEDTIAIGS 252 (702)
Q Consensus 174 aG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~gvdVIn~SlG~~~~~~~~~~~~~~a~ 252 (702)
++. +|+++|+.+|+++..+ +..+++++||+||++.|++|||||||... ......+..++
T Consensus 55 a~~------------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~--~~~~~~~~~~~ 114 (222)
T cd07492 55 KKY------------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPG--DRDFPLLKELL 114 (222)
T ss_pred Hcc------------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--CCcCHHHHHHH
Confidence 754 6999999999998876 88889999999999999999999999872 22345677888
Q ss_pred HHHHhCCCEEEEccCCCCCCCCCcCCCCCceEEeeeeccCcceeeEEEeCCCeEEeeEeecccCCCCceeeEEEcCCCCC
Q 043420 253 FHAMKKGILTSNSAGNSGPDAASLANVAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISINTIDYKGKMFPLIYGGDAPN 332 (702)
Q Consensus 253 ~~a~~~Gi~vV~AAGN~G~~~~~~~~~a~~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~lv~~~~~~~ 332 (702)
.++.++|+++|+||||++.... .+...+++|+|++...++
T Consensus 115 ~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~--------------------------------------- 154 (222)
T cd07492 115 EYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD--------------------------------------- 154 (222)
T ss_pred HHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC---------------------------------------
Confidence 8888999999999999987543 356778999999754331
Q ss_pred CCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCCCCCcccCcceEEecchhHHHHHHHH
Q 043420 333 RTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDRDVAYSFPLPNSYLDLYDGSKIASYL 412 (702)
Q Consensus 333 ~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~ 412 (702)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCCCcEEeeccCCCCCCCCCCCCCCceEeccccch
Q 043420 413 NSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMS 492 (702)
Q Consensus 413 ~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~y~~~sGTSmA 492 (702)
..+ .+++ ++|+.|||.+|+++.+.. .|..++|||||
T Consensus 155 ----------------------~~~---~~~~--------~~~~~apg~~i~~~~~~~-----------~~~~~~GTS~A 190 (222)
T cd07492 155 ----------------------PKS---FWYI--------YVEFSADGVDIIAPAPHG-----------RYLTVSGNSFA 190 (222)
T ss_pred ----------------------Ccc---cccC--------CceEEeCCCCeEeecCCC-----------CEEEeccHHHH
Confidence 001 1133 349999999999987653 68999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCc
Q 043420 493 CPHATAAAAYVKSFYPSWSPAAIKSALMTTAT 524 (702)
Q Consensus 493 aP~VAG~aALl~q~~P~lsp~~ik~~L~~TA~ 524 (702)
||+|||++|||+|++|+|+++|||++|++||+
T Consensus 191 ap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 191 APHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999985
No 35
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-39 Score=334.90 Aligned_cols=277 Identities=26% Similarity=0.399 Sum_probs=224.8
Q ss_pred eeeEEEEEeCHHHHHHHhcCCCeEEEEeCceecc--------ccCCCccccCchh-------hcc----cCCCCCCcEEE
Q 043420 38 SFNGFVAKLTHDEAQRLKGMQGVMSVFPNGKKQL--------HTTRSWDFMGFSE-------HVK----RATTESDIIVG 98 (702)
Q Consensus 38 ~~ng~s~~l~~~~~~~l~~~p~V~~v~~~~~~~~--------~~~~s~~~~g~~~-------~w~----~~~~G~gV~Vg 98 (702)
+|+|..-.++.+-+..+++.|-++.++++...+. +..-+|.+..+.. -|- +-..|+||..-
T Consensus 145 ~~~~y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaY 224 (501)
T KOG1153|consen 145 VFRGYTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAY 224 (501)
T ss_pred hhhccccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEE
Confidence 7888999999999999999999999998776543 3333444433221 121 13389999999
Q ss_pred EeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCCCCCCCCCCChhHHHHHhccCCC
Q 043420 99 MLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFKSPRDSEGHGTHTSSTAAGGLV 178 (702)
Q Consensus 99 VIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVAgiaaG~~~ 178 (702)
|+||||+.+||+|.++ +.|- +.... .....|++||||||||+|+++.
T Consensus 225 v~DTGVni~H~dFegR------a~wG-----------------a~i~~---------~~~~~D~nGHGTH~AG~I~sKt- 271 (501)
T KOG1153|consen 225 VLDTGVNIEHPDFEGR------AIWG-----------------ATIPP---------KDGDEDCNGHGTHVAGLIGSKT- 271 (501)
T ss_pred Eecccccccccccccc------eecc-----------------cccCC---------CCcccccCCCcceeeeeeeccc-
Confidence 9999999999999854 2331 11111 1124589999999999999986
Q ss_pred CCCcccccccceeeecccCCeEEEEEEecCCC-CCHHHHHHHHHHHHHC---------CCCEEEEeecCCCCCCCccCHH
Q 043420 179 SKASLFGIGFGTAIGGVPSARIAVYKICWFDG-CADADILAAFDDAIAD---------GVDIISISVGSFSAVNYFEDTI 248 (702)
Q Consensus 179 ~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~~~---------gvdVIn~SlG~~~~~~~~~~~~ 248 (702)
.|||-+++|+++||++++| +..+++++++|++++. +..|.|||+|+. ..-.+
T Consensus 272 -------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~-----~S~aL 333 (501)
T KOG1153|consen 272 -------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGF-----RSAAL 333 (501)
T ss_pred -------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCc-----ccHHH
Confidence 6999999999999999998 9999999999999985 457999999998 23578
Q ss_pred HHHHHHHHhCCCEEEEccCCCCCCCC-CcCCCCCceEEeeeeccCcceeeEEEeCCCeEEeeEeecccCCCCceeeEEEc
Q 043420 249 AIGSFHAMKKGILTSNSAGNSGPDAA-SLANVAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISINTIDYKGKMFPLIYG 327 (702)
Q Consensus 249 ~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~a~~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~lv~~ 327 (702)
..|++.|.+.|+++++||||+..+.+ +.+..+..+|||||++..
T Consensus 334 n~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~----------------------------------- 378 (501)
T KOG1153|consen 334 NMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN----------------------------------- 378 (501)
T ss_pred HHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc-----------------------------------
Confidence 89999999999999999999987654 445678999999998644
Q ss_pred CCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCCCCCcccCcceEEecchhHHH
Q 043420 328 GDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDRDVAYSFPLPNSYLDLYDGSK 407 (702)
Q Consensus 328 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~ 407 (702)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCCCcEEeeccCCCCCCCCCCCCCCceEec
Q 043420 408 IASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIIS 487 (702)
Q Consensus 408 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~y~~~s 487 (702)
+.++.||+||++. ||.|||++|+|.|.++. ....+.|
T Consensus 379 --------------------------D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~---------~at~ilS 415 (501)
T KOG1153|consen 379 --------------------------DTIAFFSNWGKCV--------DIFAPGVNILSSWIGSN---------NATAILS 415 (501)
T ss_pred --------------------------cchhhhcCcccee--------eeecCchhhhhhhhcCc---------cchheee
Confidence 4689999999999 99999999999998763 3567999
Q ss_pred cccchhHHHHHHHHHHHHhCCC---------CCHHHHHHHHHhcC
Q 043420 488 GTSMSCPHATAAAAYVKSFYPS---------WSPAAIKSALMTTA 523 (702)
Q Consensus 488 GTSmAaP~VAG~aALl~q~~P~---------lsp~~ik~~L~~TA 523 (702)
|||||+|||||++|..+.++|. .||.++|..+..=.
T Consensus 416 GTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~ 460 (501)
T KOG1153|consen 416 GTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFK 460 (501)
T ss_pred cccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhccc
Confidence 9999999999999999999883 38888888776544
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=3.1e-38 Score=328.41 Aligned_cols=243 Identities=30% Similarity=0.376 Sum_probs=186.8
Q ss_pred CCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCCCCCCCCCCChhHHH
Q 043420 91 TESDIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFKSPRDSEGHGTHTS 170 (702)
Q Consensus 91 ~G~gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVA 170 (702)
+|+||+|+|||+||+++||+|.+..... ..+.... ........|..+||||||
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~------------------------~~~~~~~---~~~~~~~~~~~~HGT~va 53 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEA------------------------SYYVAVN---DAGYASNGDGDSHGTHVA 53 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccc------------------------ccccccc---cccCCCCCCCCChHHHHH
Confidence 6999999999999999999998642110 0000000 000123457889999999
Q ss_pred HHhccCCCCCCcccccccceeeecccCCeEEEEEEecCCC--CCHHHHHHHHHHHHHCCCCEEEEeecCCCCCC------
Q 043420 171 STAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDG--CADADILAAFDDAIADGVDIISISVGSFSAVN------ 242 (702)
Q Consensus 171 giaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~A~~~gvdVIn~SlG~~~~~~------ 242 (702)
|+|+|+... ..+.|+||+|+|+.+|+++..+ +....+.++++++++.+++|||||||......
T Consensus 54 giiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~ 124 (267)
T cd04848 54 GVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTY 124 (267)
T ss_pred HHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccch
Confidence 999998643 2238999999999999998764 66777899999999999999999999884221
Q ss_pred -----CccCHHHHHHHHHHhCCCEEEEccCCCCCCCCCcC---------CCCCceEEeeeeccCcceeeEEEeCCCeEEe
Q 043420 243 -----YFEDTIAIGSFHAMKKGILTSNSAGNSGPDAASLA---------NVAPWTLSVAASTVDRKFVTRVKLGNGEVYE 308 (702)
Q Consensus 243 -----~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~---------~~a~~vitVgA~~~~~~~~~~~~~~~g~~~~ 308 (702)
.....+...+..+.++|++||+||||++....... ...+++|+||+++.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~--------------- 189 (267)
T cd04848 125 KGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG--------------- 189 (267)
T ss_pred hhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC---------------
Confidence 24566777778888999999999999986543332 3457899999876542
Q ss_pred eEeecccCCCCceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCCC
Q 043420 309 GISINTIDYKGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDRD 388 (702)
Q Consensus 309 g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~~ 388 (702)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCcceEEecchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccc--cCCCCCCCCCCCCCCCcEEeCCCcEEee
Q 043420 389 VAYSFPLPNSYLDLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVAS--FSSRGPNPITNDILKPDLTAPGVDILAS 466 (702)
Q Consensus 389 ~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~--fSS~Gp~~~~~~~lKPDI~APG~~I~sa 466 (702)
.... ||++|+.. ..++++|||.+|.++
T Consensus 190 ----------------------------------------------~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~ 218 (267)
T cd04848 190 ----------------------------------------------TIASYSYSNRCGVA-----ANWCLAAPGENIYST 218 (267)
T ss_pred ----------------------------------------------Ccccccccccchhh-----hhheeecCcCceeec
Confidence 1223 47887643 234799999999998
Q ss_pred ccCCCCCCCCCCCCCCceEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCc
Q 043420 467 WTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAAIKSALMTTAT 524 (702)
Q Consensus 467 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~ik~~L~~TA~ 524 (702)
.... ...|..++|||||||+|||++|||+|++|+|++++||++|++||+
T Consensus 219 ~~~~---------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 219 DPDG---------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred ccCC---------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 7631 136889999999999999999999999999999999999999985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-37 Score=322.32 Aligned_cols=322 Identities=24% Similarity=0.328 Sum_probs=249.9
Q ss_pred EEEecceeeEEEEEeCH-----HHHHHHhcCCCeEEEEeCceeccc---------------------cC-----------
Q 043420 32 LHSYHRSFNGFVAKLTH-----DEAQRLKGMQGVMSVFPNGKKQLH---------------------TT----------- 74 (702)
Q Consensus 32 ~~~y~~~~ng~s~~l~~-----~~~~~l~~~p~V~~v~~~~~~~~~---------------------~~----------- 74 (702)
--.|-.-|.-+-++-.. -++++|..+|.|+.|.|-+....- .+
T Consensus 90 a~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~ 169 (1033)
T KOG4266|consen 90 ATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNT 169 (1033)
T ss_pred cccCCCccceEEEeccCccchhheeeehhcCCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCcccccc
Confidence 34555555555554332 258999999999999887654311 00
Q ss_pred ---CCc----------cccCchhhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEe
Q 043420 75 ---RSW----------DFMGFSEHVKRATTESDIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIG 141 (702)
Q Consensus 75 ---~s~----------~~~g~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig 141 (702)
.+. +.++++-+|+.|++|++|+|||.|||+.-+||.|+.- ..
T Consensus 170 ~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~VkvAiFDTGl~~~HPHFrnv-------------------------KE 224 (1033)
T KOG4266|consen 170 TLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAKVKVAIFDTGLRADHPHFRNV-------------------------KE 224 (1033)
T ss_pred ccccchhhhhhhHHHHHHhchhhHHhccccCCceEEEEeecccccCCccccch-------------------------hh
Confidence 000 1235555999999999999999999999999999831 11
Q ss_pred eeecccCCCCCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeecccCCeEEEEEEecCCC-CCHHHHHHHH
Q 043420 142 AKFYRSDKKFSPFDFKSPRDSEGHGTHTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDG-CADADILAAF 220 (702)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~D~~gHGThVAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai 220 (702)
-.+++ + .....|.-||||.|||+|||... ..|.||+++|+++||+.+.. .+.+.++.|+
T Consensus 225 RTNWT-N-------E~tLdD~lgHGTFVAGvia~~~e------------c~gfa~d~e~~~frvft~~qVSYTSWFLDAF 284 (1033)
T KOG4266|consen 225 RTNWT-N-------EDTLDDNLGHGTFVAGVIAGRNE------------CLGFASDTEIYAFRVFTDAQVSYTSWFLDAF 284 (1033)
T ss_pred hcCCc-C-------ccccccCcccceeEeeeeccchh------------hcccCCccceeEEEeeccceeehhhHHHHHH
Confidence 11233 1 12344778999999999998742 27889999999999998865 7888999999
Q ss_pred HHHHHCCCCEEEEeecCCCCCCCccCHHHHHHHHHHhCCCEEEEccCCCCCCCCCcCCCCC--ceEEeeeeccCcceeeE
Q 043420 221 DDAIADGVDIISISVGSFSAVNYFEDTIAIGSFHAMKKGILTSNSAGNSGPDAASLANVAP--WTLSVAASTVDRKFVTR 298 (702)
Q Consensus 221 ~~A~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~a~--~vitVgA~~~~~~~~~~ 298 (702)
.||+...+||+|+|+|++ .+.+.|+-+-+.+.....|++|.|+||+||-.++..|++. .+|.||..+.|
T Consensus 285 NYAI~~kidvLNLSIGGP---DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGIdfd------ 355 (1033)
T KOG4266|consen 285 NYAIATKIDVLNLSIGGP---DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDFD------ 355 (1033)
T ss_pred HHHHhhhcceEeeccCCc---ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeecccccc------
Confidence 999999999999999998 5778888888888899999999999999999998888653 45555543222
Q ss_pred EEeCCCeEEeeEeecccCCCCceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceE
Q 043420 299 VKLGNGEVYEGISINTIDYKGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVG 378 (702)
Q Consensus 299 ~~~~~g~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g 378 (702)
T Consensus 356 -------------------------------------------------------------------------------- 355 (1033)
T KOG4266|consen 356 -------------------------------------------------------------------------------- 355 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeCCCCCCCcccCcceEEecchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCC----CCCCCCC
Q 043420 379 SVMQGNDDRDVAYSFPLPNSYLDLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPI----TNDILKP 454 (702)
Q Consensus 379 ~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~----~~~~lKP 454 (702)
+.++.|||||=+.. ..|++||
T Consensus 356 -------------------------------------------------------D~IA~FSSRGMtTWELP~GYGRmkp 380 (1033)
T KOG4266|consen 356 -------------------------------------------------------DHIASFSSRGMTTWELPHGYGRMKP 380 (1033)
T ss_pred -------------------------------------------------------chhhhhccCCcceeecCCcccccCC
Confidence 56899999995432 3789999
Q ss_pred cEEeCCCcEEeeccCCCCCCCCCCCCCCceEeccccchhHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcCcCCCCCC
Q 043420 455 DLTAPGVDILASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKS----FYPSWSPAAIKSALMTTATPMSVEA 530 (702)
Q Consensus 455 DI~APG~~I~sa~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~lsp~~ik~~L~~TA~~~~~~~ 530 (702)
||++-|.+|...... .+....||||.|+|+|||+++||.+ +.--+.|+.+|++|+..|.+++...
T Consensus 381 DiVtYG~~v~GS~v~-----------~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~N 449 (1033)
T KOG4266|consen 381 DIVTYGRDVMGSKVS-----------TGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGPN 449 (1033)
T ss_pred ceEeeccccccCccc-----------ccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCCc
Confidence 999999999865443 3578899999999999999999977 2345799999999999999998773
Q ss_pred CCCCCccCCCCCcCccCcCCCceeeeC
Q 043420 531 NSDAEFAYGSGHLNPSMAVNPGLVYDA 557 (702)
Q Consensus 531 ~~~~~~~~G~G~in~~~Al~~glv~~~ 557 (702)
-++||+|++|+.++.+-=+-|..
T Consensus 450 ----MfEQGaGkldLL~syqiL~SYkP 472 (1033)
T KOG4266|consen 450 ----MFEQGAGKLDLLESYQILKSYKP 472 (1033)
T ss_pred ----hhhccCcchhHHHHHHHHHhcCC
Confidence 68999999999998763233433
No 38
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-33 Score=287.90 Aligned_cols=194 Identities=20% Similarity=0.216 Sum_probs=144.7
Q ss_pred CCCCCCChhHHHHHhccCCCCCCcccccccceeeecccCCeEEEEEEecCCCCCHHHHHHHHHHH--HHCCCCEEEEeec
Q 043420 159 PRDSEGHGTHTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDGCADADILAAFDDA--IADGVDIISISVG 236 (702)
Q Consensus 159 ~~D~~gHGThVAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A--~~~gvdVIn~SlG 236 (702)
..|..+|||||||||||. .|++|+++|+..++... ....+.++++|+ .+.+++|||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~~---~~~~~~~~i~~~~~~~~gv~VINmS~G 94 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGIK---SNNGQWQECLEAQQNGNNVKIINHSYG 94 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCCC---CCCccHHHHHHHHHhcCCceEEEeCCc
Confidence 457899999999999987 46679999987655221 233466777888 5689999999999
Q ss_pred CCCCCC-----CccCHHHHHHHHHHhC-CCEEEEccCCCCCCCC-----CcCCCCCceEEeeeeccCcceeeEEEeCCCe
Q 043420 237 SFSAVN-----YFEDTIAIGSFHAMKK-GILTSNSAGNSGPDAA-----SLANVAPWTLSVAASTVDRKFVTRVKLGNGE 305 (702)
Q Consensus 237 ~~~~~~-----~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~-----~~~~~a~~vitVgA~~~~~~~~~~~~~~~g~ 305 (702)
...... +..+.+..+++.+.++ |+++|+||||+|.... ..+..++++|+|||++.....
T Consensus 95 ~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~~---------- 164 (247)
T cd07488 95 EGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGDR---------- 164 (247)
T ss_pred cCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCCc----------
Confidence 873332 2334577777777766 9999999999997431 234467889999997654210
Q ss_pred EEeeEeecccCCCCceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCC
Q 043420 306 VYEGISINTIDYKGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGND 385 (702)
Q Consensus 306 ~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~ 385 (702)
T Consensus 165 -------------------------------------------------------------------------------- 164 (247)
T cd07488 165 -------------------------------------------------------------------------------- 164 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccCcceEEecchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCC--CCCCCCCCCCCCcEEeCCCcE
Q 043420 386 DRDVAYSFPLPNSYLDLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSR--GPNPITNDILKPDLTAPGVDI 463 (702)
Q Consensus 386 ~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~--Gp~~~~~~~lKPDI~APG~~I 463 (702)
...+.||++ +|+. ++..||||+|||++|
T Consensus 165 ------------------------------------------------~~~s~~sn~~~~~~~--~~~~~~di~APG~~i 194 (247)
T cd07488 165 ------------------------------------------------FFASDVSNAGSEINS--YGRRKVLIVAPGSNY 194 (247)
T ss_pred ------------------------------------------------ceecccccccCCCCC--CCCceeEEEEeeeeE
Confidence 112445554 4554 788999999999999
Q ss_pred EeeccCCCCCCCCCCCCCCceEeccccchhHHHHHHHHHHHHhCCCCCH------HHHHHHHHhcC
Q 043420 464 LASWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSP------AAIKSALMTTA 523 (702)
Q Consensus 464 ~sa~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp------~~ik~~L~~TA 523 (702)
++ +. ..|..++|||||||||||++|||++++|++.+ -++|.+|++|+
T Consensus 195 ~s--~~-----------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~~ 247 (247)
T cd07488 195 NL--PD-----------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSSV 247 (247)
T ss_pred EC--CC-----------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhccC
Confidence 98 22 25889999999999999999999999887664 46777777663
No 39
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-33 Score=306.19 Aligned_cols=238 Identities=27% Similarity=0.322 Sum_probs=183.3
Q ss_pred CCChhHHHHHhccCCCCCCcccccccceeeecccCCeEEEEEEecCC-C--CCHHHHHHHHHHHHHCCCCEEEEeecCCC
Q 043420 163 EGHGTHTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFD-G--CADADILAAFDDAIADGVDIISISVGSFS 239 (702)
Q Consensus 163 ~gHGThVAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g--~~~~~i~~ai~~A~~~gvdVIn~SlG~~~ 239 (702)
.-|||||||||+|+..+... ..||||+|+|+.+++.+.. | .+...+.+|+..+++..+||||||+|-..
T Consensus 310 g~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a 381 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA 381 (1304)
T ss_pred CCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC
Confidence 45999999999999865433 3799999999999997653 3 56677999999999999999999999884
Q ss_pred CCCCccCHHHHHHHHHHhCCCEEEEccCCCCCCCCCcCC---CCCceEEeeeeccCcceeeEEEeCCCeEEeeEeecccC
Q 043420 240 AVNYFEDTIAIGSFHAMKKGILTSNSAGNSGPDAASLAN---VAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISINTID 316 (702)
Q Consensus 240 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~---~a~~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 316 (702)
..+....-++..-..+.++|+++|+||||+||...+++. ....+|.|||--......
T Consensus 382 ~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~-------------------- 441 (1304)
T KOG1114|consen 382 HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQ-------------------- 441 (1304)
T ss_pred CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHH--------------------
Confidence 433334444444333447999999999999999877775 345788898843221100
Q ss_pred CCCceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCCCCCcccCcc
Q 043420 317 YKGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDRDVAYSFPLP 396 (702)
Q Consensus 317 ~~~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~p 396 (702)
..|.++
T Consensus 442 ---a~y~~~----------------------------------------------------------------------- 447 (1304)
T KOG1114|consen 442 ---AEYSVR----------------------------------------------------------------------- 447 (1304)
T ss_pred ---hhhhhh-----------------------------------------------------------------------
Confidence 000000
Q ss_pred eEEecchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCCCcEEeeccCCCCCCCC
Q 043420 397 NSYLDLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEG 476 (702)
Q Consensus 397 ~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~ 476 (702)
..-......+|||||+. ||-+--.|.|||+.|.+-- ...
T Consensus 448 ---------------------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsVP-~~t----- 486 (1304)
T KOG1114|consen 448 ---------------------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASVP-QYT----- 486 (1304)
T ss_pred ---------------------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCCc-hhh-----
Confidence 01113468899999998 9999999999999987632 111
Q ss_pred CCCCCCceEeccccchhHHHHHHHHHHHHh----CCCCCHHHHHHHHHhcCcCCCCCCCCCCCccCCCCCcCccCcCC
Q 043420 477 DPRISPFNIISGTSMSCPHATAAAAYVKSF----YPSWSPAAIKSALMTTATPMSVEANSDAEFAYGSGHLNPSMAVN 550 (702)
Q Consensus 477 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~in~~~Al~ 550 (702)
...-..|.|||||+|+++|.+|||++. +-.|||..||.+|++||+++.+. .+|.+|.|+|++++|.+
T Consensus 487 ---lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i----d~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 487 ---LQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI----DSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred ---hhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc----chhccCcceeehhHHHH
Confidence 124578999999999999999999764 57899999999999999999987 48999999999999976
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.98 E-value=3.1e-31 Score=270.17 Aligned_cols=234 Identities=32% Similarity=0.443 Sum_probs=177.5
Q ss_pred cEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCCCCCCCCCCChhHHHHHhc
Q 043420 95 IIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFKSPRDSEGHGTHTSSTAA 174 (702)
Q Consensus 95 V~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~D~~gHGThVAgiaa 174 (702)
|+|+|||+||+++||+|... ... ......+. . .........+..+||||||++|+
T Consensus 1 v~VaiiD~G~~~~~~~~~~~---------~~~------------~~~~~~~~-~---~~~~~~~~~~~~~HGt~va~~i~ 55 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGL---------FGG------------GDGGNDDD-D---NENGPTDPDDGNGHGTHVAGIIA 55 (241)
T ss_pred CEEEEEeCCCCCCCcchhcc---------ccC------------cccccccc-c---CcCCCCCCCCCCCcHHHHHHHHh
Confidence 68999999999999987211 000 00011111 0 00001234578899999999999
Q ss_pred cCCCCCCcccccccceeeecccCCeEEEEEEecCCC-CCHHHHHHHHHHHH-HCCCCEEEEeecCCCCCCCccCHHHHHH
Q 043420 175 GGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDG-CADADILAAFDDAI-ADGVDIISISVGSFSAVNYFEDTIAIGS 252 (702)
Q Consensus 175 G~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~A~-~~gvdVIn~SlG~~~~~~~~~~~~~~a~ 252 (702)
+...... ..|+||+++|+.+|+....+ .....+++++++++ ..+++|||||||..... ....+...+
T Consensus 56 ~~~~~~~---------~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~--~~~~~~~~~ 124 (241)
T cd00306 56 ASANNGG---------GVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP--PSSALSEAI 124 (241)
T ss_pred cCCCCCC---------CEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC--CCHHHHHHH
Confidence 8864321 17999999999999987765 67888999999999 89999999999998322 456677778
Q ss_pred HHHHhC-CCEEEEccCCCCCCCC---CcCCCCCceEEeeeeccCcceeeEEEeCCCeEEeeEeecccCCCCceeeEEEcC
Q 043420 253 FHAMKK-GILTSNSAGNSGPDAA---SLANVAPWTLSVAASTVDRKFVTRVKLGNGEVYEGISINTIDYKGKMFPLIYGG 328 (702)
Q Consensus 253 ~~a~~~-Gi~vV~AAGN~G~~~~---~~~~~a~~vitVgA~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~lv~~~ 328 (702)
.++.++ |+++|+|+||.+.... ..+...+++|+||+++.+.
T Consensus 125 ~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~----------------------------------- 169 (241)
T cd00306 125 DYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG----------------------------------- 169 (241)
T ss_pred HHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC-----------------------------------
Confidence 888887 9999999999998775 4667889999999976542
Q ss_pred CCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCCCCCCcccCcceEEecchhHHHH
Q 043420 329 DAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDDRDVAYSFPLPNSYLDLYDGSKI 408 (702)
Q Consensus 329 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~~~~~~~~~~p~~~i~~~~~~~l 408 (702)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCcEEEEeccccccccCCCccc-ccCCCCCCCCCCCCCCCcEEeCCCcEEeeccCCCCCCCCCCCCCCceEec
Q 043420 409 ASYLNSTSIPTATILKSTAEKNEFAPVVA-SFSSRGPNPITNDILKPDLTAPGVDILASWTQASSPSEGDPRISPFNIIS 487 (702)
Q Consensus 409 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~a-~fSS~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~y~~~s 487 (702)
... .++++|+ |||+.|||..+...... ....+..++
T Consensus 170 --------------------------~~~~~~~~~~~--------~~~~~apg~~~~~~~~~---------~~~~~~~~~ 206 (241)
T cd00306 170 --------------------------TPASPSSNGGA--------GVDIAAPGGDILSSPTT---------GGGGYATLS 206 (241)
T ss_pred --------------------------CccCCcCCCCC--------CceEEeCcCCccCcccC---------CCCCeEeec
Confidence 111 3444444 56999999999875111 124789999
Q ss_pred cccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 043420 488 GTSMSCPHATAAAAYVKSFYPSWSPAAIKSALMTT 522 (702)
Q Consensus 488 GTSmAaP~VAG~aALl~q~~P~lsp~~ik~~L~~T 522 (702)
|||||||+|||++|||+|++|++++.++|++|++|
T Consensus 207 GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 207 GTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 99999999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=8.4e-24 Score=238.87 Aligned_cols=273 Identities=26% Similarity=0.375 Sum_probs=200.2
Q ss_pred ccCchhhccc--CCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCC
Q 043420 79 FMGFSEHVKR--ATTESDIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDF 156 (702)
Q Consensus 79 ~~g~~~~w~~--~~~G~gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~ 156 (702)
+.....+|.. +++|+||+|+|||+||+..||+|.+... ..++|.... .
T Consensus 126 ~~~~~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~------------------------~~~~~~~~~------~ 175 (508)
T COG1404 126 AISVGALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAV------------------------AGGDFVDGD------P 175 (508)
T ss_pred hcccccccccccCCCCCCeEEEEeccCCCCCChhhhcccc------------------------cccccccCC------C
Confidence 3444558887 9999999999999999999999985411 012333110 1
Q ss_pred C-CCCCCCCChhHHHHHhccCCCCCCcccccccceeeecccCCeEEEEEEecCC-C-CCHHHHHHHHHHHHHCC--CCEE
Q 043420 157 K-SPRDSEGHGTHTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFD-G-CADADILAAFDDAIADG--VDII 231 (702)
Q Consensus 157 ~-~~~D~~gHGThVAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g-~~~~~i~~ai~~A~~~g--vdVI 231 (702)
. ...|..+|||||++++++....+ .....|+||+++++.+|++... + ...++++++|+++++.+ +++|
T Consensus 176 ~~~~~d~~~hGt~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~i 248 (508)
T COG1404 176 EPPFLDDNGHGTHVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVI 248 (508)
T ss_pred CCCCCCCCCCcceeeeeeeeecccC-------CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEE
Confidence 1 24689999999999999842111 1113899999999999999875 5 67778899999999999 9999
Q ss_pred EEeecCCCCCCCccCHHHHHHHHHHhCC-CEEEEccCCCCCCCCC----cCCCC--CceEEeeeeccCcceeeEEEeCCC
Q 043420 232 SISVGSFSAVNYFEDTIAIGSFHAMKKG-ILTSNSAGNSGPDAAS----LANVA--PWTLSVAASTVDRKFVTRVKLGNG 304 (702)
Q Consensus 232 n~SlG~~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~G~~~~~----~~~~a--~~vitVgA~~~~~~~~~~~~~~~g 304 (702)
|||+|.. ........+..++..++..| +++|+++||.+..... .+... +.+++|++.+.
T Consensus 249 n~s~g~~-~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~------------- 314 (508)
T COG1404 249 NLSLGGS-LSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL------------- 314 (508)
T ss_pred EecCCCC-ccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC-------------
Confidence 9999986 23344556677777787777 9999999999876521 11212 35666665432
Q ss_pred eEEeeEeecccCCCCceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeC
Q 043420 305 EVYEGISINTIDYKGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGN 384 (702)
Q Consensus 305 ~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~ 384 (702)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccCcceEEecchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCCCcEE
Q 043420 385 DDRDVAYSFPLPNSYLDLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDIL 464 (702)
Q Consensus 385 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~ 464 (702)
...++.||++|+.. ..++.|||.+|.
T Consensus 315 ------------------------------------------------~~~~~~~s~~g~~~------~~~~~apg~~i~ 340 (508)
T COG1404 315 ------------------------------------------------SDTVASFSNDGSPT------GVDIAAPGVNIL 340 (508)
T ss_pred ------------------------------------------------CCccccccccCCCC------CcceeCCCcccc
Confidence 13468899999751 239999999998
Q ss_pred e-----eccCCCCCCCCCCCCCCceEeccccchhHHHHHHHHHHHHhCC-CCCHHHHHHHHHhcCcC--CCCCCCCCCCc
Q 043420 465 A-----SWTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYP-SWSPAAIKSALMTTATP--MSVEANSDAEF 536 (702)
Q Consensus 465 s-----a~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P-~lsp~~ik~~L~~TA~~--~~~~~~~~~~~ 536 (702)
+ .+.+.. ..|..++||||++|||+|++||+++.+| .+++.+++..+..++.. ... ...
T Consensus 341 ~~~~~~~~~~~~---------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 406 (508)
T COG1404 341 SLSAVNTLPGDG---------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLSG-----VDN 406 (508)
T ss_pred ccccceeeeCCc---------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhccccccCCc-----ccc
Confidence 7 443320 2489999999999999999999999999 89999999999888874 111 244
Q ss_pred cCCCCCcCccCcCC
Q 043420 537 AYGSGHLNPSMAVN 550 (702)
Q Consensus 537 ~~G~G~in~~~Al~ 550 (702)
.++.|..+...+..
T Consensus 407 ~~~~~~~~~~~~~~ 420 (508)
T COG1404 407 LVGGGLANLDAAAT 420 (508)
T ss_pred ccccCccccccccc
Confidence 56777666655544
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.4e-20 Score=189.93 Aligned_cols=302 Identities=18% Similarity=0.230 Sum_probs=187.2
Q ss_pred cCchhhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCCCCC
Q 043420 80 MGFSEHVKRATTESDIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFKSP 159 (702)
Q Consensus 80 ~g~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 159 (702)
+++..+|++|++|++|+++|+|.||||.||++... ...-..++|.++++++...+ .
T Consensus 148 lnv~~awa~g~tgknvttaimddgvdymhpdlk~n----------------------ynaeasydfssndpfpypry--t 203 (629)
T KOG3526|consen 148 LNVAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN----------------------YNAEASYDFSSNDPFPYPRY--T 203 (629)
T ss_pred ccHHHHHhhcccCCCceEEeecCCchhcCcchhcc----------------------cCceeecccccCCCCCCCcc--c
Confidence 34556999999999999999999999999999732 22334556664443322111 1
Q ss_pred CC-CCCChhHHHHHhccCCCCCCcccccccceeeecccCCeEEEEEEecCCCCCHHHHHHHHHHHHH-CCCCEEEEeecC
Q 043420 160 RD-SEGHGTHTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDGCADADILAAFDDAIA-DGVDIISISVGS 237 (702)
Q Consensus 160 ~D-~~gHGThVAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~-~gvdVIn~SlG~ 237 (702)
.| .+.|||.|||-+++...+ +.+| .|||.+.++..+|+++. .+-.|+++|-..--+ ..++|.+-|||.
T Consensus 204 ddwfnshgtrcagev~aardn--gicg------vgvaydskvagirmldq--pymtdlieansmghep~kihiysaswgp 273 (629)
T KOG3526|consen 204 DDWFNSHGTRCAGEVVAARDN--GICG------VGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKIHIYSASWGP 273 (629)
T ss_pred chhhhccCccccceeeeeccC--Ccee------eeeeeccccceeeecCC--chhhhhhhhcccCCCCceEEEEecccCc
Confidence 12 578999999988776543 3445 59999999999999865 455666655322211 346899999998
Q ss_pred CCCCCCccCHH---HHHHHHHHh-----CCCEEEEccCCCCCCCCCcC---CCCCceEEeeeeccCcceeeEEEeCCCeE
Q 043420 238 FSAVNYFEDTI---AIGSFHAMK-----KGILTSNSAGNSGPDAASLA---NVAPWTLSVAASTVDRKFVTRVKLGNGEV 306 (702)
Q Consensus 238 ~~~~~~~~~~~---~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~~~---~~a~~vitVgA~~~~~~~~~~~~~~~g~~ 306 (702)
.......+.|- -+++.+-++ .|-++|.|.|..|....... ..+-|.|++.+.-.|.+
T Consensus 274 tddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsaindg~------------ 341 (629)
T KOG3526|consen 274 TDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSAINDGE------------ 341 (629)
T ss_pred CCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeehhhcCCc------------
Confidence 74333333332 223323332 56789999999886532222 24457777654322210
Q ss_pred EeeEeecccCCCCceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeecchhhhhhhcCceEEEEeeCCC
Q 043420 307 YEGISINTIDYKGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDELNDGFGAATARAVGSVMQGNDD 386 (702)
Q Consensus 307 ~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~aGa~g~i~~~~~~ 386 (702)
..-+.+.|..
T Consensus 342 -------------------------------nahydescss--------------------------------------- 351 (629)
T KOG3526|consen 342 -------------------------------NAHYDESCSS--------------------------------------- 351 (629)
T ss_pred -------------------------------cccccchhhH---------------------------------------
Confidence 1111222221
Q ss_pred CCCCcccCcceEEecchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCCCCCCCCCCcEEeCCCcEEee
Q 043420 387 RDVAYSFPLPNSYLDLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNPITNDILKPDLTAPGVDILAS 466 (702)
Q Consensus 387 ~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~lKPDI~APG~~I~sa 466 (702)
...+.||+-|-.. +- |+ ..+
T Consensus 352 -----------------------------------------------tlastfsng~rnp--------et---gv--att 371 (629)
T KOG3526|consen 352 -----------------------------------------------TLASTFSNGGRNP--------ET---GV--ATT 371 (629)
T ss_pred -----------------------------------------------HHHHHhhcCCcCC--------Cc---ce--eee
Confidence 1235577755433 11 11 111
Q ss_pred ccCCCCCCCCCCCCCCceEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCCC----------CCC--C
Q 043420 467 WTQASSPSEGDPRISPFNIISGTSMSCPHATAAAAYVKSFYPSWSPAAIKSALMTTATPMSVEA----------NSD--A 534 (702)
Q Consensus 467 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~ik~~L~~TA~~~~~~~----------~~~--~ 534 (702)
+-+......-||||.|||-.||+.||-++++|.|+..+++.+-.-|.+...-.+ +.. .
T Consensus 372 ----------dlyg~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglef 441 (629)
T KOG3526|consen 372 ----------DLYGRCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEF 441 (629)
T ss_pred ----------ccccceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccccceee
Confidence 111234567899999999999999999999999999999998877775432211 111 4
Q ss_pred CccCCCCCcCccCcCCCceeeeCCchhhHhhhhcCC
Q 043420 535 EFAYGSGHLNPSMAVNPGLVYDAGELDYVKFLCGQG 570 (702)
Q Consensus 535 ~~~~G~G~in~~~Al~~glv~~~~~~~~~~~l~~~~ 570 (702)
+.-||+|.+|+.+.+.-..-+...+.. |-|.-|
T Consensus 442 nhlfgfgvldagamv~lak~wktvppr---yhc~ag 474 (629)
T KOG3526|consen 442 NHLFGFGVLDAGAMVMLAKAWKTVPPR---YHCTAG 474 (629)
T ss_pred ecccccccccHHHHHHHHHHhccCCCc---eeeccc
Confidence 567999999998776544444444443 345544
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.72 E-value=4.6e-17 Score=176.25 Aligned_cols=101 Identities=25% Similarity=0.248 Sum_probs=80.5
Q ss_pred eeeecccCCeEEEEEEecCCCCCHHHHHHHHHHHHHC---CCCEEEEeecCCCCC--CCccCHHHHHHHHHHhCCCEEEE
Q 043420 190 TAIGGVPSARIAVYKICWFDGCADADILAAFDDAIAD---GVDIISISVGSFSAV--NYFEDTIAIGSFHAMKKGILTSN 264 (702)
Q Consensus 190 ~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~---gvdVIn~SlG~~~~~--~~~~~~~~~a~~~a~~~Gi~vV~ 264 (702)
.+.||||+|+|+.|++++.. ..+++.++.+++.+ +++|||+|||..... ..+...+..++.+|..+||+||+
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvva 158 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLA 158 (361)
T ss_pred HHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 35899999999999997542 45678888888887 999999999987321 11235677788888899999999
Q ss_pred ccCCCCCCCC-----------CcCCCCCceEEeeeeccCc
Q 043420 265 SAGNSGPDAA-----------SLANVAPWTLSVAASTVDR 293 (702)
Q Consensus 265 AAGN~G~~~~-----------~~~~~a~~vitVgA~~~~~ 293 (702)
|+||+|.... ..+...|++++||+++...
T Consensus 159 AsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 159 ASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred eCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 9999997653 2356789999999988764
No 44
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.07 E-value=1.2e-09 Score=100.27 Aligned_cols=116 Identities=38% Similarity=0.606 Sum_probs=92.0
Q ss_pred EEeCCCeEEeeEeecccCCCCceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEee------cchhhhhh
Q 043420 299 VKLGNGEVYEGISINTIDYKGKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDE------LNDGFGAA 372 (702)
Q Consensus 299 ~~~~~g~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~------~~~~~~~~ 372 (702)
++|+||+.+.|++++.... ..+++++..... .......|.+..++..+++||||||++ .++..+++
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~~------~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~ 73 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANS------GDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVK 73 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCcC------CCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHH
Confidence 6899999999999997554 467777643321 234457899988888999999999987 25678899
Q ss_pred hcCceEEEEeeCCCCCCC---cccCcceEEecchhHHHHHHHHhcCCCcEEEE
Q 043420 373 TARAVGSVMQGNDDRDVA---YSFPLPNSYLDLYDGSKIASYLNSTSIPTATI 422 (702)
Q Consensus 373 ~aGa~g~i~~~~~~~~~~---~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i 422 (702)
++||.|+|++++...... ....+|.+.|+.+++..|++|++++..++++|
T Consensus 74 ~~GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~i 126 (126)
T cd02120 74 AAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTATI 126 (126)
T ss_pred HcCCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCcceeC
Confidence 999999999988764332 23679999999999999999999987776653
No 45
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=98.95 E-value=3.7e-09 Score=99.19 Aligned_cols=109 Identities=29% Similarity=0.393 Sum_probs=82.1
Q ss_pred CceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEee-----cchhhhhhhcCceEEEEeeCCCCCCC---
Q 043420 319 GKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDE-----LNDGFGAATARAVGSVMQGNDDRDVA--- 390 (702)
Q Consensus 319 ~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~-----~~~~~~~~~aGa~g~i~~~~~~~~~~--- 390 (702)
....+++|.+. |.+..+...+++|||+||+| .+|..+++++||.++|++++......
T Consensus 25 ~~~~~lv~~g~---------------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~ 89 (143)
T cd02133 25 GKTYELVDAGL---------------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTL 89 (143)
T ss_pred CcEEEEEEccC---------------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccC
Confidence 46778888654 33334455679999999986 56889999999999999998764322
Q ss_pred -cccCcceEEecchhHHHHHHHHhcCCCcEEEEeccccccccCCCcccccCCCCCCC
Q 043420 391 -YSFPLPNSYLDLYDGSKIASYLNSTSIPTATILKSTAEKNEFAPVVASFSSRGPNP 446 (702)
Q Consensus 391 -~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gp~~ 446 (702)
....+|+++|+..+|..|+.++++ ..++.+ ..+.. ..+++.++.||||||..
T Consensus 90 ~~~~~iP~v~Is~~dG~~L~~~l~~--~~~i~~-~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 90 GEAVFIPVVFISKEDGEALKAALES--SKKLTF-NTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred CCCCeEeEEEecHHHHHHHHHHHhC--CCeEEE-Eeccc-cccCCccccccCcCCCC
Confidence 124689999999999999999988 334443 33333 46778899999999963
No 46
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.4e-06 Score=102.79 Aligned_cols=95 Identities=19% Similarity=0.189 Sum_probs=56.6
Q ss_pred eeecccCCeEEEEEEecCCCCCHHHHHHHHHHHHHCCC-CEEEEeecCCC--CCCC--ccCHHHHHHHHHHhCCCEEEEc
Q 043420 191 AIGGVPSARIAVYKICWFDGCADADILAAFDDAIADGV-DIISISVGSFS--AVNY--FEDTIAIGSFHAMKKGILTSNS 265 (702)
Q Consensus 191 ~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~gv-dVIn~SlG~~~--~~~~--~~~~~~~a~~~a~~~Gi~vV~A 265 (702)
..-+||+|+|..+-+ + ......+..|+.+-...=+ -+|-+||+... ...+ .-+.+......|..+||.+++|
T Consensus 288 s~A~AP~A~I~lvva--p-~~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~AA 364 (1174)
T COG4934 288 SHAMAPKANIDLVVA--P-NPLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFAA 364 (1174)
T ss_pred hhccCccCceEEEEc--C-CCceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEEe
Confidence 356899999998866 2 1222222233322222111 23335665431 2222 2344455556677899999999
Q ss_pred cCCCCCCCCC--------cCCCCCceEEeee
Q 043420 266 AGNSGPDAAS--------LANVAPWTLSVAA 288 (702)
Q Consensus 266 AGN~G~~~~~--------~~~~a~~vitVgA 288 (702)
+|.+|....+ .+..+|++++||.
T Consensus 365 SGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 365 SGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred cccccccCCCcccceeecccCCCccEEeecC
Confidence 9999876643 3347899999997
No 47
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.31 E-value=1e-05 Score=72.55 Aligned_cols=81 Identities=17% Similarity=0.262 Sum_probs=57.3
Q ss_pred ccEEEEEEEEecCCCCeeEEEEEEc--------CCC----------e-EEEEEcCeEEEeeCCeEEEEEEEEEEeeC---
Q 043420 612 TTQVFHRTVTNVGSAVSTYRAVVYT--------RPG----------L-MIKVQPSVLYFKSLYQKQSFVVTVTANVG--- 669 (702)
Q Consensus 612 ~~~t~~rtvtnvg~~~~ty~~~~~~--------~~g----------~-~v~v~p~~l~~~~~g~~~~~~vt~~~~~~--- 669 (702)
...+++.+|+|.|+.+.+|+++... ..| . .+...|.++++ ++|++++++|+|+++..
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~p~~~~~ 86 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITPPSGLDA 86 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGHH
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEehhcCCc
Confidence 3488999999999999999988762 111 1 57778889999 99999999999999552
Q ss_pred CCCCeEEEEEEEEC-CCc-eEEeEEE
Q 043420 670 KSVNMISASLVWDD-GVH-HVRSPVV 693 (702)
Q Consensus 670 ~~~~~~~G~~~~~~-~~~-~v~~P~~ 693 (702)
....+++|+|.+++ ..+ .+++||+
T Consensus 87 ~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 87 SNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp TT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred ccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 34679999999986 444 8999985
No 48
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.9e-06 Score=94.61 Aligned_cols=161 Identities=16% Similarity=0.112 Sum_probs=98.9
Q ss_pred cCchhhcccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCceeEeeeecccCCCCCCCCCCCC
Q 043420 80 MGFSEHVKRATTESDIIVGMLDTGIWPESQSFSDENFGPPPKKWKGSCQTSSNFTCNNKIIGAKFYRSDKKFSPFDFKSP 159 (702)
Q Consensus 80 ~g~~~~w~~~~~G~gV~VgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 159 (702)
+.+..+|..+++|.++.++|.|+|+...||+.... ....+..++..++ .....-.+.
T Consensus 20 ~~v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~----------------------~~~~~s~d~~~~~-~~p~~~~~~ 76 (431)
T KOG3525|consen 20 LNVQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN----------------------YDPLGSYDVNRHD-NDPEPRCDG 76 (431)
T ss_pred ceeeeccccCCCCCceEEEEeeccccccCcccccc----------------------cCcceeEeeecCC-CCcccccCC
Confidence 56677999999999999999999999999998742 1123333333111 111111122
Q ss_pred CCCCCChhHHHHHhccCCCCCCcccccccceeeecccCCeEEEEEEecCCCCCHHHHHHHHHHHH-HCCCCEEEEeecCC
Q 043420 160 RDSEGHGTHTSSTAAGGLVSKASLFGIGFGTAIGGVPSARIAVYKICWFDGCADADILAAFDDAI-ADGVDIISISVGSF 238 (702)
Q Consensus 160 ~D~~gHGThVAgiaaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~A~-~~gvdVIn~SlG~~ 238 (702)
.....|||-||+-.+....+.. . ..|+++++++..++++... . .+...+..... ..-+++-+.|||..
T Consensus 77 ~~~~~~g~~Ca~~~a~~~~~~~--C------~vg~~~~~~~~g~~~l~~~--v-~~~~~~~~~~~~~~~~di~scsw~pd 145 (431)
T KOG3525|consen 77 TNENKHGTRCAGCVAARANNLT--C------GVGVAYNATIGGIRMLAGC--V-SDAVEAPSLGFGPCHIDIYSCSWGPD 145 (431)
T ss_pred CCccccCCCCCcccccccCCCc--C------CCCcccCccccceeeeeee--c-ccceecccccCCCCCceeecCcCCcc
Confidence 2358899999999988752211 1 2689999999999887431 1 12222221111 23468889999987
Q ss_pred CCCCCcc---CHHHHHHHHHH-----hCCCEEEEccCCCCCCCC
Q 043420 239 SAVNYFE---DTIAIGSFHAM-----KKGILTSNSAGNSGPDAA 274 (702)
Q Consensus 239 ~~~~~~~---~~~~~a~~~a~-----~~Gi~vV~AAGN~G~~~~ 274 (702)
....... .....+...+. .+|-+.+++.||.|....
T Consensus 146 dd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 146 DDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred cCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcccccc
Confidence 4222221 22233333322 578899999999876543
No 49
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.30 E-value=2.2e-06 Score=78.10 Aligned_cols=80 Identities=21% Similarity=0.241 Sum_probs=66.1
Q ss_pred CCccCCCCCCccCcCCeEEEEee-----cchhhhhhhcCceEEEEeeCCCCCCC--------cccCcceEEecchhHHHH
Q 043420 342 SRFCSLGSLDEKLVQGKIVLCDE-----LNDGFGAATARAVGSVMQGNDDRDVA--------YSFPLPNSYLDLYDGSKI 408 (702)
Q Consensus 342 ~~~c~~~~~~~~~~~gkivl~~~-----~~~~~~~~~aGa~g~i~~~~~~~~~~--------~~~~~p~~~i~~~~~~~l 408 (702)
...|.+..+...+++|||+||+| .+|..+++++||.++|++|+...... ....+|.++|+..+|+.|
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l 108 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHH
Confidence 47899888888899999999998 56889999999999999998763211 234689999999999999
Q ss_pred HHHHhcCCCcEEE
Q 043420 409 ASYLNSTSIPTAT 421 (702)
Q Consensus 409 ~~~~~~~~~~~~~ 421 (702)
+.++..+...+++
T Consensus 109 ~~~l~~g~~v~~~ 121 (122)
T cd04816 109 RRRLGAGETLELD 121 (122)
T ss_pred HHHHcCCCEEEEe
Confidence 9999887665554
No 50
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.26 E-value=1.9e-06 Score=72.40 Aligned_cols=47 Identities=43% Similarity=0.646 Sum_probs=41.4
Q ss_pred CCCCcEEEEecceeeEEEEEeCHHHHHHHhcCCCeEEEEeCceeccc
Q 043420 26 SASDHLLHSYHRSFNGFVAKLTHDEAQRLKGMQGVMSVFPNGKKQLH 72 (702)
Q Consensus 26 ~~~~~~~~~y~~~~ng~s~~l~~~~~~~l~~~p~V~~v~~~~~~~~~ 72 (702)
....++++.|+..||||+++++++++++|+++|+|++|+||..+++|
T Consensus 36 ~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~l~ 82 (82)
T PF05922_consen 36 SINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVSLH 82 (82)
T ss_dssp TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEEE-
T ss_pred ccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEecC
Confidence 45789999998899999999999999999999999999999988764
No 51
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.19 E-value=1.5e-05 Score=72.66 Aligned_cols=78 Identities=18% Similarity=0.180 Sum_probs=62.6
Q ss_pred CccCCCCCCccCcCCeEEEEee-----cchhhhhhhcCceEEEEeeCCC-CCCC------cccCcceEEecchhHHHHHH
Q 043420 343 RFCSLGSLDEKLVQGKIVLCDE-----LNDGFGAATARAVGSVMQGNDD-RDVA------YSFPLPNSYLDLYDGSKIAS 410 (702)
Q Consensus 343 ~~c~~~~~~~~~~~gkivl~~~-----~~~~~~~~~aGa~g~i~~~~~~-~~~~------~~~~~p~~~i~~~~~~~l~~ 410 (702)
..|.+..+ +.+++|||+|++| .+|..+++++||.++|+||+.. .... ....+|.++|+.++|+.|+.
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 35876554 3579999999988 5789999999999999999873 2111 24569999999999999999
Q ss_pred HHhcCCCcEEE
Q 043420 411 YLNSTSIPTAT 421 (702)
Q Consensus 411 ~~~~~~~~~~~ 421 (702)
.+.++...+++
T Consensus 111 ~l~~g~~v~~~ 121 (122)
T cd02130 111 ALANGGEVSAN 121 (122)
T ss_pred HHhcCCcEEEe
Confidence 99988776654
No 52
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.16 E-value=6.2e-06 Score=74.63 Aligned_cols=81 Identities=22% Similarity=0.263 Sum_probs=65.1
Q ss_pred CCCCccCCCCCCccCcCCeEEEEee-----cchhhhhhhcCceEEEEeeCCCCCCC-------cccCcceEEecchhHHH
Q 043420 340 SNSRFCSLGSLDEKLVQGKIVLCDE-----LNDGFGAATARAVGSVMQGNDDRDVA-------YSFPLPNSYLDLYDGSK 407 (702)
Q Consensus 340 ~~~~~c~~~~~~~~~~~gkivl~~~-----~~~~~~~~~aGa~g~i~~~~~~~~~~-------~~~~~p~~~i~~~~~~~ 407 (702)
.....|.+...+ .+++|||+||+| .+|..+++++||.|+|++++...... ....+|+++|+.+++..
T Consensus 25 ~~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~ 103 (118)
T cd04818 25 SNTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDA 103 (118)
T ss_pred CcccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHH
Confidence 345689888874 459999999987 46888999999999999998764211 23469999999999999
Q ss_pred HHHHHhcCCCcEEE
Q 043420 408 IASYLNSTSIPTAT 421 (702)
Q Consensus 408 l~~~~~~~~~~~~~ 421 (702)
|+.|++.+...+++
T Consensus 104 l~~~l~~g~~v~v~ 117 (118)
T cd04818 104 LKAALAAGGTVTVT 117 (118)
T ss_pred HHHHHhcCCcEEEe
Confidence 99999987766554
No 53
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.12 E-value=1.1e-05 Score=74.89 Aligned_cols=82 Identities=16% Similarity=-0.002 Sum_probs=67.9
Q ss_pred CCCccCCCCC--CccCcCCeEEEEee-----cchhhhhhhcCceEEEEeeCCCC-CCC------cccCcceEEecchhHH
Q 043420 341 NSRFCSLGSL--DEKLVQGKIVLCDE-----LNDGFGAATARAVGSVMQGNDDR-DVA------YSFPLPNSYLDLYDGS 406 (702)
Q Consensus 341 ~~~~c~~~~~--~~~~~~gkivl~~~-----~~~~~~~~~aGa~g~i~~~~~~~-~~~------~~~~~p~~~i~~~~~~ 406 (702)
....|.+... +..++.|+|+|++| .+|..+++++||.++|+||+.+. ... ....+|.++|+..+|+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 4578998877 56789999999988 68999999999999999999862 111 2346899999999999
Q ss_pred HHHHHHhcCCCcEEEE
Q 043420 407 KIASYLNSTSIPTATI 422 (702)
Q Consensus 407 ~l~~~~~~~~~~~~~i 422 (702)
.|+.++..+...+++|
T Consensus 123 ~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 123 EILELLERGISVTMVI 138 (138)
T ss_pred HHHHHHHcCCcEEEeC
Confidence 9999999887777654
No 54
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.10 E-value=2.7e-06 Score=74.52 Aligned_cols=71 Identities=21% Similarity=0.338 Sum_probs=56.9
Q ss_pred CCccCCCCCCccCcCCeEEEEee-----cchhhhhhhcCceEEEEeeCCCC-------CCCcccCcceEEecchhHHHHH
Q 043420 342 SRFCSLGSLDEKLVQGKIVLCDE-----LNDGFGAATARAVGSVMQGNDDR-------DVAYSFPLPNSYLDLYDGSKIA 409 (702)
Q Consensus 342 ~~~c~~~~~~~~~~~gkivl~~~-----~~~~~~~~~aGa~g~i~~~~~~~-------~~~~~~~~p~~~i~~~~~~~l~ 409 (702)
...|.+......+++||||||+| .+|..+++++||.|+|++|.... .......+|+++|+.++|+.|+
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~ 98 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALL 98 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHH
T ss_pred cccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhh
Confidence 45677788888999999999987 67899999999999999992211 1125678999999999999999
Q ss_pred HHH
Q 043420 410 SYL 412 (702)
Q Consensus 410 ~~~ 412 (702)
+|+
T Consensus 99 ~~i 101 (101)
T PF02225_consen 99 AYI 101 (101)
T ss_dssp HHH
T ss_pred ccC
Confidence 885
No 55
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.08 E-value=3.1e-05 Score=70.97 Aligned_cols=81 Identities=19% Similarity=0.076 Sum_probs=63.3
Q ss_pred CCCCccCCCCCCccCcCCeEEEEee-----cchhhhhhhcCceEEEEeeCCCCCCC----cccCcceEEecchhHHHHHH
Q 043420 340 SNSRFCSLGSLDEKLVQGKIVLCDE-----LNDGFGAATARAVGSVMQGNDDRDVA----YSFPLPNSYLDLYDGSKIAS 410 (702)
Q Consensus 340 ~~~~~c~~~~~~~~~~~gkivl~~~-----~~~~~~~~~aGa~g~i~~~~~~~~~~----~~~~~p~~~i~~~~~~~l~~ 410 (702)
.....|.+...+..+++|||+|++| .+|..+++++||.++|+||+.+.... +...+|.+.+ ..+|+.|+.
T Consensus 39 ~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~ 117 (129)
T cd02124 39 VADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWID 117 (129)
T ss_pred CCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHH
Confidence 4557899876666689999999998 57999999999999999998764322 3334566666 999999999
Q ss_pred HHhcCCCcEEE
Q 043420 411 YLNSTSIPTAT 421 (702)
Q Consensus 411 ~~~~~~~~~~~ 421 (702)
.+..+...+++
T Consensus 118 ~l~~G~~vtv~ 128 (129)
T cd02124 118 ALAAGSNVTVD 128 (129)
T ss_pred HHhcCCeEEEe
Confidence 99877665554
No 56
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.05 E-value=1.3e-05 Score=73.17 Aligned_cols=82 Identities=23% Similarity=0.229 Sum_probs=65.6
Q ss_pred CCCCccCCCC--CCccCcCCeEEEEee-----cchhhhhhhcCceEEEEeeCCCCCCC---------cccCcceEEecch
Q 043420 340 SNSRFCSLGS--LDEKLVQGKIVLCDE-----LNDGFGAATARAVGSVMQGNDDRDVA---------YSFPLPNSYLDLY 403 (702)
Q Consensus 340 ~~~~~c~~~~--~~~~~~~gkivl~~~-----~~~~~~~~~aGa~g~i~~~~~~~~~~---------~~~~~p~~~i~~~ 403 (702)
.....|.+.. +...+++|||+||++ .+|..+++++||.|+|++++...... ....+|++.|+.+
T Consensus 28 ~~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~ 107 (126)
T cd00538 28 GPLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYA 107 (126)
T ss_pred cceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHH
Confidence 3456788777 677889999999987 46889999999999999998763211 2357999999999
Q ss_pred hHHHHHHHHhcCCCcEEE
Q 043420 404 DGSKIASYLNSTSIPTAT 421 (702)
Q Consensus 404 ~~~~l~~~~~~~~~~~~~ 421 (702)
+++.|+.++.++...+++
T Consensus 108 ~g~~l~~~~~~~~~v~~~ 125 (126)
T cd00538 108 DGEALLSLLEAGKTVTVD 125 (126)
T ss_pred HHHHHHHHHhcCCceEEe
Confidence 999999999986655443
No 57
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.04 E-value=2.1e-05 Score=70.96 Aligned_cols=80 Identities=20% Similarity=0.269 Sum_probs=65.1
Q ss_pred CCccCCCCCCccCcCCeEEEEee-----cchhhhhhhcCceEEEEeeCCCCC-C----------CcccCcceEEecchhH
Q 043420 342 SRFCSLGSLDEKLVQGKIVLCDE-----LNDGFGAATARAVGSVMQGNDDRD-V----------AYSFPLPNSYLDLYDG 405 (702)
Q Consensus 342 ~~~c~~~~~~~~~~~gkivl~~~-----~~~~~~~~~aGa~g~i~~~~~~~~-~----------~~~~~~p~~~i~~~~~ 405 (702)
...|.+... ..+++|||+|++| .+|..+++++||.++|++|+.... . .....+|+++|+..+|
T Consensus 21 ~~gC~~~~~-~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELRN-IHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCCC-ccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 467987443 5679999999888 789999999999999999986531 1 1234689999999999
Q ss_pred HHHHHHHhcCCCcEEEE
Q 043420 406 SKIASYLNSTSIPTATI 422 (702)
Q Consensus 406 ~~l~~~~~~~~~~~~~i 422 (702)
+.|+..+..+..+++.|
T Consensus 100 ~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 100 YMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHcCCceEEee
Confidence 99999999988777665
No 58
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.99 E-value=2.2e-05 Score=70.53 Aligned_cols=74 Identities=18% Similarity=0.174 Sum_probs=62.1
Q ss_pred CCCccCCCCCCccCcCCeEEEEee-----cchhhhhhhcCceEEEEeeCCCCCC-------CcccCcceEEecchhHHHH
Q 043420 341 NSRFCSLGSLDEKLVQGKIVLCDE-----LNDGFGAATARAVGSVMQGNDDRDV-------AYSFPLPNSYLDLYDGSKI 408 (702)
Q Consensus 341 ~~~~c~~~~~~~~~~~gkivl~~~-----~~~~~~~~~aGa~g~i~~~~~~~~~-------~~~~~~p~~~i~~~~~~~l 408 (702)
....|.+..+...+++|||+|++| .+|..+++.+||.++|++|+..... .....+|+++|+.++|+.|
T Consensus 29 ~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i 108 (120)
T cd02129 29 SSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDI 108 (120)
T ss_pred CcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHH
Confidence 446899988888889999999988 7899999999999999999976311 1345689999999999999
Q ss_pred HHHHhc
Q 043420 409 ASYLNS 414 (702)
Q Consensus 409 ~~~~~~ 414 (702)
...+..
T Consensus 109 ~~~l~~ 114 (120)
T cd02129 109 QQTFGD 114 (120)
T ss_pred HHHhcc
Confidence 888764
No 59
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=97.94 E-value=2.8e-05 Score=71.07 Aligned_cols=78 Identities=21% Similarity=0.318 Sum_probs=62.3
Q ss_pred CCccCCCCCCccCcCCeEEEEee-----cchhhhhhhcCceEEEEeeCCCCC------C------C---cccCcceEEec
Q 043420 342 SRFCSLGSLDEKLVQGKIVLCDE-----LNDGFGAATARAVGSVMQGNDDRD------V------A---YSFPLPNSYLD 401 (702)
Q Consensus 342 ~~~c~~~~~~~~~~~gkivl~~~-----~~~~~~~~~aGa~g~i~~~~~~~~------~------~---~~~~~p~~~i~ 401 (702)
...|.+... +.+++|||+|++| .+|..+++++||.++|++|+.+.. . . +...+|+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467986654 5578999999998 679999999999999999876531 1 0 23578999999
Q ss_pred chhHHHHHHHHhcCCCcEE
Q 043420 402 LYDGSKIASYLNSTSIPTA 420 (702)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~ 420 (702)
..+|+.|+..+......++
T Consensus 106 ~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHHHhCCceEE
Confidence 9999999999987765554
No 60
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.80 E-value=7.1e-05 Score=69.71 Aligned_cols=76 Identities=13% Similarity=0.191 Sum_probs=61.9
Q ss_pred CCccCCCCCCccCcCCeEEEEee-----cchhhhhhhcCceEEEEeeCCCCCCC---------cccCcceEEecchhHHH
Q 043420 342 SRFCSLGSLDEKLVQGKIVLCDE-----LNDGFGAATARAVGSVMQGNDDRDVA---------YSFPLPNSYLDLYDGSK 407 (702)
Q Consensus 342 ~~~c~~~~~~~~~~~gkivl~~~-----~~~~~~~~~aGa~g~i~~~~~~~~~~---------~~~~~p~~~i~~~~~~~ 407 (702)
.+.|.+.. .+++|||+|++| .+|..+++++||.++|+||+.+.... ....+|+++|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46798764 368999999998 68999999999999999997753211 13578999999999999
Q ss_pred HHHHHhcCCCcEE
Q 043420 408 IASYLNSTSIPTA 420 (702)
Q Consensus 408 l~~~~~~~~~~~~ 420 (702)
|+..+..+...++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999988766554
No 61
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=97.79 E-value=6.7e-05 Score=67.51 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=60.4
Q ss_pred CCCCCccCCCCCCccCcCCeEEEEee-----cchhhhhhhcCceEEEEeeCCCCC-C--------CcccCcceEEecchh
Q 043420 339 GSNSRFCSLGSLDEKLVQGKIVLCDE-----LNDGFGAATARAVGSVMQGNDDRD-V--------AYSFPLPNSYLDLYD 404 (702)
Q Consensus 339 ~~~~~~c~~~~~~~~~~~gkivl~~~-----~~~~~~~~~aGa~g~i~~~~~~~~-~--------~~~~~~p~~~i~~~~ 404 (702)
......|.+. +..+++|||+|++| .+|..+++++||.++|++|+.... . .....+|+++|+.++
T Consensus 24 ~~p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~ 101 (117)
T cd04813 24 VSPTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTS 101 (117)
T ss_pred CCCCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHH
Confidence 3456789766 56889999999888 689999999999999999877632 1 133478999999999
Q ss_pred HHHHHHHHhcC
Q 043420 405 GSKIASYLNST 415 (702)
Q Consensus 405 ~~~l~~~~~~~ 415 (702)
+++|+.++...
T Consensus 102 g~~L~~l~~~~ 112 (117)
T cd04813 102 YHLLSSLLPKS 112 (117)
T ss_pred HHHHHHhcccc
Confidence 99998886643
No 62
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=97.76 E-value=9.3e-05 Score=67.63 Aligned_cols=81 Identities=17% Similarity=0.176 Sum_probs=63.3
Q ss_pred CCCccCCCCCC--cc----CcCCeEEEEee-----cchhhhhhhcCceEEEEeeCCCCCC--------------CcccCc
Q 043420 341 NSRFCSLGSLD--EK----LVQGKIVLCDE-----LNDGFGAATARAVGSVMQGNDDRDV--------------AYSFPL 395 (702)
Q Consensus 341 ~~~~c~~~~~~--~~----~~~gkivl~~~-----~~~~~~~~~aGa~g~i~~~~~~~~~--------------~~~~~~ 395 (702)
+...|.+.... +. ...+||+|++| .+|..+++++||.++|++|+.+... .....+
T Consensus 21 ~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~I 100 (127)
T cd02125 21 NRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITI 100 (127)
T ss_pred ccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceE
Confidence 34678876543 22 37889999998 6899999999999999999865421 123368
Q ss_pred ceEEecchhHHHHHHHHhcCCCcEEE
Q 043420 396 PNSYLDLYDGSKIASYLNSTSIPTAT 421 (702)
Q Consensus 396 p~~~i~~~~~~~l~~~~~~~~~~~~~ 421 (702)
|+++|+..+|+.|+..+..+...+++
T Consensus 101 P~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 101 PSALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred eEEEECHHHHHHHHHHHhcCCeEEEe
Confidence 99999999999999999988766654
No 63
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.65 E-value=0.00013 Score=67.32 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=52.8
Q ss_pred CCccCcCCeEEEEee----------cchhhhhhhcCceEEEEeeCC--CCCCC-------cccCcceEEecchhHHHHHH
Q 043420 350 LDEKLVQGKIVLCDE----------LNDGFGAATARAVGSVMQGND--DRDVA-------YSFPLPNSYLDLYDGSKIAS 410 (702)
Q Consensus 350 ~~~~~~~gkivl~~~----------~~~~~~~~~aGa~g~i~~~~~--~~~~~-------~~~~~p~~~i~~~~~~~l~~ 410 (702)
+...+++|||+|++| .+|..+++++||+++|+||+. +.... ....+|+++|++++|+.|+.
T Consensus 50 ~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~ 129 (139)
T cd04817 50 YICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLA 129 (139)
T ss_pred ccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHH
Confidence 345578999999887 257899999999999999998 33111 14589999999999999999
Q ss_pred HHhcC
Q 043420 411 YLNST 415 (702)
Q Consensus 411 ~~~~~ 415 (702)
.+...
T Consensus 130 ~l~~~ 134 (139)
T cd04817 130 ALGQS 134 (139)
T ss_pred HhcCC
Confidence 87543
No 64
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=97.52 E-value=0.00033 Score=66.31 Aligned_cols=76 Identities=14% Similarity=0.143 Sum_probs=62.6
Q ss_pred CCccCCCCCCc---cCcCCeEEEEee-----cchhhhhhhcCceEEEEeeCCCCCCC---------cccCcceEEecchh
Q 043420 342 SRFCSLGSLDE---KLVQGKIVLCDE-----LNDGFGAATARAVGSVMQGNDDRDVA---------YSFPLPNSYLDLYD 404 (702)
Q Consensus 342 ~~~c~~~~~~~---~~~~gkivl~~~-----~~~~~~~~~aGa~g~i~~~~~~~~~~---------~~~~~p~~~i~~~~ 404 (702)
.+.|.+....+ ..+.|||+|++| .+|..+++++||.++|++|+...... ....+|+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 46798776644 789999999988 68999999999999999998754221 14579999999999
Q ss_pred HHHHHHHHhcCCC
Q 043420 405 GSKIASYLNSTSI 417 (702)
Q Consensus 405 ~~~l~~~~~~~~~ 417 (702)
|+.|+.++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999887654
No 65
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.49 E-value=0.001 Score=60.91 Aligned_cols=83 Identities=17% Similarity=0.113 Sum_probs=61.9
Q ss_pred CceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEee--c-----chhhhhhhcCceEEEEeeCCCCCCC-
Q 043420 319 GKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDE--L-----NDGFGAATARAVGSVMQGNDDRDVA- 390 (702)
Q Consensus 319 ~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~--~-----~~~~~~~~aGa~g~i~~~~~~~~~~- 390 (702)
....++|+.+... +..+...+++|||+|+++ . +|..+++++||.|+|++|+......
T Consensus 22 ~~~~~lV~~g~G~---------------~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~ 86 (127)
T cd04819 22 EAKGEPVDAGYGL---------------PKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPA 86 (127)
T ss_pred CeeEEEEEeCCCC---------------HHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcc
Confidence 3567888875431 122335569999999987 2 4788999999999999987654221
Q ss_pred ---------cccCcceEEecchhHHHHHHHHhcCC
Q 043420 391 ---------YSFPLPNSYLDLYDGSKIASYLNSTS 416 (702)
Q Consensus 391 ---------~~~~~p~~~i~~~~~~~l~~~~~~~~ 416 (702)
....+|++.|+.++++.|...++.+.
T Consensus 87 ~~~~~~~~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 87 TGDEGTEDGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred cccccccCCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 13569999999999999999988643
No 66
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.19 E-value=0.09 Score=45.90 Aligned_cols=82 Identities=21% Similarity=0.148 Sum_probs=62.4
Q ss_pred ccEEEEEEEEecCCCCeeEEEEEEcCCCeEEEEEcCeEEEeeCCeEEEEEEEEEEeeCCCCCeEEEEEEEECCCceEEeE
Q 043420 612 TTQVFHRTVTNVGSAVSTYRAVVYTRPGLMIKVQPSVLYFKSLYQKQSFVVTVTANVGKSVNMISASLVWDDGVHHVRSP 691 (702)
Q Consensus 612 ~~~t~~rtvtnvg~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~~~~~~~~~~v~~P 691 (702)
...+.+.+|+|.|..+..|++.......-.++++|..-.+ ++|++.++.|+|.... ..+.+.+.|...-.+..+.+|
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~--~~g~~~~~l~i~~e~~~~~i~ 96 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTK--PLGDYEGSLVITTEGGSFEIP 96 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC--CCceEEEEEEEEECCeEEEEE
Confidence 3566777899999999999987654334567778887667 8899999999998432 234578999887667789998
Q ss_pred EEEEe
Q 043420 692 VVAFV 696 (702)
Q Consensus 692 ~~~~~ 696 (702)
+-+..
T Consensus 97 v~a~~ 101 (102)
T PF14874_consen 97 VKAEV 101 (102)
T ss_pred EEEEE
Confidence 87654
No 67
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=96.06 E-value=0.023 Score=52.57 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=53.1
Q ss_pred CccCcCCeEEEEee-----------cch-------hhhhhhcCceEEEEeeCCCC-------CC----CcccCcceEEec
Q 043420 351 DEKLVQGKIVLCDE-----------LND-------GFGAATARAVGSVMQGNDDR-------DV----AYSFPLPNSYLD 401 (702)
Q Consensus 351 ~~~~~~gkivl~~~-----------~~~-------~~~~~~aGa~g~i~~~~~~~-------~~----~~~~~~p~~~i~ 401 (702)
+..+++|||+|+.+ ..| ...++++||.++|++|..+. +. .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 35679999999866 223 58899999999999986422 11 123469999999
Q ss_pred chhHHHHHHHHhcCCCcEE
Q 043420 402 LYDGSKIASYLNSTSIPTA 420 (702)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~ 420 (702)
.+++..|...++.+..+++
T Consensus 114 ~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 114 VEDADMLERLAARGKPIRV 132 (134)
T ss_pred hhcHHHHHHHHhCCCCeEE
Confidence 9999999999887765544
No 68
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.84 E-value=0.11 Score=43.06 Aligned_cols=58 Identities=21% Similarity=0.170 Sum_probs=38.3
Q ss_pred ccEEEEEEEEecCCCC-eeEEEEEEcCCCeEEEEEcCeEEEeeCCeEEEEEEEEEEeeC
Q 043420 612 TTQVFHRTVTNVGSAV-STYRAVVYTRPGLMIKVQPSVLYFKSLYQKQSFVVTVTANVG 669 (702)
Q Consensus 612 ~~~t~~rtvtnvg~~~-~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~ 669 (702)
...+++.+|+|.|..+ ...++++..|.|-++.+.|.++.--++|++++++++|++...
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~ 63 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPAD 63 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCC
Confidence 5788999999999755 458899999999998888888765599999999999998653
No 69
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=94.65 E-value=0.091 Score=49.38 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=44.9
Q ss_pred ceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeec-----------------------chhhhhhhcCc
Q 043420 320 KMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDEL-----------------------NDGFGAATARA 376 (702)
Q Consensus 320 ~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~-----------------------~~~~~~~~aGa 376 (702)
.+-++||.+... ....|....+...+++|||||+.+. .|..++...||
T Consensus 20 vtg~lVfvGyGi---------~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA 90 (151)
T cd04822 20 VTAPVVFAGYGI---------TAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGA 90 (151)
T ss_pred ceEeEEEecCCc---------CccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCC
Confidence 356778776431 2345766666778899999999652 37789999999
Q ss_pred eEEEEeeCCCCC
Q 043420 377 VGSVMQGNDDRD 388 (702)
Q Consensus 377 ~g~i~~~~~~~~ 388 (702)
.|+|++++....
T Consensus 91 ~aVIv~~d~~~~ 102 (151)
T cd04822 91 AAVIVVNGPNSH 102 (151)
T ss_pred eEEEEEeCCccc
Confidence 999999987654
No 70
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=94.64 E-value=0.13 Score=47.56 Aligned_cols=58 Identities=22% Similarity=0.138 Sum_probs=45.1
Q ss_pred ceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEeec-----------------chhhhhhhcCceEEEEe
Q 043420 320 KMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDEL-----------------NDGFGAATARAVGSVMQ 382 (702)
Q Consensus 320 ~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~-----------------~~~~~~~~aGa~g~i~~ 382 (702)
..-++||.+... ....|....+...+++|||||+.+. +|..++.++||.|+|++
T Consensus 22 v~gelVfvGyG~---------~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~ 92 (137)
T cd04820 22 VEAPLVFVGYGL---------VAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITL 92 (137)
T ss_pred ceEeEEEecCCc---------CccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEE
Confidence 467788876432 2356777777788999999999862 47899999999999999
Q ss_pred eCCC
Q 043420 383 GNDD 386 (702)
Q Consensus 383 ~~~~ 386 (702)
++..
T Consensus 93 ~d~~ 96 (137)
T cd04820 93 TTPR 96 (137)
T ss_pred eCCc
Confidence 9865
No 71
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=94.29 E-value=0.061 Score=52.05 Aligned_cols=63 Identities=17% Similarity=0.176 Sum_probs=48.3
Q ss_pred ccCcCCeEEEEee-----cchhhhhhhcCceEEEEeeCCCC------------------C------CC------------
Q 043420 352 EKLVQGKIVLCDE-----LNDGFGAATARAVGSVMQGNDDR------------------D------VA------------ 390 (702)
Q Consensus 352 ~~~~~gkivl~~~-----~~~~~~~~~aGa~g~i~~~~~~~------------------~------~~------------ 390 (702)
..+++|||+|+++ .+|..+++++||+|+|+|++... + ++
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 4578999999986 67899999999999999988411 0 00
Q ss_pred -cccCcceEEecchhHHHHHHHHhc
Q 043420 391 -YSFPLPNSYLDLYDGSKIASYLNS 414 (702)
Q Consensus 391 -~~~~~p~~~i~~~~~~~l~~~~~~ 414 (702)
....||+.-|+.+++..|+..+.-
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCC
Confidence 013478888999999999887753
No 72
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=94.05 E-value=0.1 Score=48.46 Aligned_cols=59 Identities=22% Similarity=0.112 Sum_probs=45.5
Q ss_pred CceeeEEEcCCCCCCCCCCCCCCCCccCCCCCCccCcCCeEEEEee-----------------------cchhhhhhhcC
Q 043420 319 GKMFPLIYGGDAPNRTGGYQGSNSRFCSLGSLDEKLVQGKIVLCDE-----------------------LNDGFGAATAR 375 (702)
Q Consensus 319 ~~~~~lv~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~-----------------------~~~~~~~~~aG 375 (702)
....++|+.+..- ....|....+...+++||||++.+ ..|..++.++|
T Consensus 19 ~~~aelVfvGyGi---------~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~G 89 (142)
T cd04814 19 IKDAPLVFVGYGI---------KAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHG 89 (142)
T ss_pred ccceeeEEecCCc---------CCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCC
Confidence 3467888876431 234577778888899999999854 14788999999
Q ss_pred ceEEEEeeCCC
Q 043420 376 AVGSVMQGNDD 386 (702)
Q Consensus 376 a~g~i~~~~~~ 386 (702)
|.|+|++++..
T Consensus 90 A~gvIii~~~~ 100 (142)
T cd04814 90 AAGVLIVHELA 100 (142)
T ss_pred CcEEEEEeCCC
Confidence 99999999876
No 73
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=92.93 E-value=0.95 Score=40.67 Aligned_cols=57 Identities=19% Similarity=0.160 Sum_probs=40.8
Q ss_pred cEEEEEEEEecCCCCeeEEEEEEcCCCeEEEEEcCeEEEeeCCeEEEEEEEEEEeeCC
Q 043420 613 TQVFHRTVTNVGSAVSTYRAVVYTRPGLMIKVQPSVLYFKSLYQKQSFVVTVTANVGK 670 (702)
Q Consensus 613 ~~t~~rtvtnvg~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~ 670 (702)
.-.++..|+|....+.+|+++++.++|+++......+.+ ++|++.++.|.|.++...
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHHH
Confidence 445788899999999999999999999999664588889 899999999999997643
No 74
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=90.27 E-value=0.64 Score=50.71 Aligned_cols=71 Identities=15% Similarity=0.194 Sum_probs=57.6
Q ss_pred ccCcCCeEEEEee-----cchhhhhhhcCceEEEEeeCCCCCC---------CcccCcceEEecchhHHHHHHHHhcCCC
Q 043420 352 EKLVQGKIVLCDE-----LNDGFGAATARAVGSVMQGNDDRDV---------AYSFPLPNSYLDLYDGSKIASYLNSTSI 417 (702)
Q Consensus 352 ~~~~~gkivl~~~-----~~~~~~~~~aGa~g~i~~~~~~~~~---------~~~~~~p~~~i~~~~~~~l~~~~~~~~~ 417 (702)
..+++||+++..| .+|...++++||.+++++|+..... ..+..+|+++|++++++.+.....+..+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 3468899999877 7899999999999999999953211 1466899999999999999987777776
Q ss_pred cEEEE
Q 043420 418 PTATI 422 (702)
Q Consensus 418 ~~~~i 422 (702)
.++.+
T Consensus 171 V~~~l 175 (541)
T KOG2442|consen 171 VELAL 175 (541)
T ss_pred EEEEE
Confidence 66666
No 75
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=88.77 E-value=0.48 Score=55.46 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=22.4
Q ss_pred CCCCCCcEEEEeccCCCCCCCCCC
Q 043420 89 ATTESDIIVGMLDTGIWPESQSFS 112 (702)
Q Consensus 89 ~~~G~gV~VgVIDtGid~~Hp~f~ 112 (702)
.|.|+||+|||+|||||+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 789999999999999999988876
No 76
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=88.52 E-value=9.4 Score=34.52 Aligned_cols=69 Identities=14% Similarity=0.228 Sum_probs=51.5
Q ss_pred ccEEEEEEEEecCCCCeeEEEEEEc----CCCe--------------------EEEEEcCeEEEeeCCeEEEEEEEEEEe
Q 043420 612 TTQVFHRTVTNVGSAVSTYRAVVYT----RPGL--------------------MIKVQPSVLYFKSLYQKQSFVVTVTAN 667 (702)
Q Consensus 612 ~~~t~~rtvtnvg~~~~ty~~~~~~----~~g~--------------------~v~v~p~~l~~~~~g~~~~~~vt~~~~ 667 (702)
...+++.+|+|.++...+|.+.+.. ..|+ -+++ |..+++ +++|+++++++++.+
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKMP 104 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEcC
Confidence 5788999999999999999887533 1111 1122 556888 899999999999987
Q ss_pred eCCCCCeEEEEEEEE
Q 043420 668 VGKSVNMISASLVWD 682 (702)
Q Consensus 668 ~~~~~~~~~G~~~~~ 682 (702)
...-.+.+-|.|.+.
T Consensus 105 ~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 105 KKAFDGIILGGIYFS 119 (121)
T ss_pred CCCcCCEEEeeEEEE
Confidence 755567777888775
No 77
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=88.08 E-value=0.49 Score=44.09 Aligned_cols=34 Identities=18% Similarity=-0.049 Sum_probs=30.1
Q ss_pred cCcCCeEEEEee-----cchhhhhhhcCceEEEEeeCCC
Q 043420 353 KLVQGKIVLCDE-----LNDGFGAATARAVGSVMQGNDD 386 (702)
Q Consensus 353 ~~~~gkivl~~~-----~~~~~~~~~aGa~g~i~~~~~~ 386 (702)
-+++|||+|++. ..|..+++..||.|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 469999999984 7899999999999999999754
No 78
>COG1470 Predicted membrane protein [Function unknown]
Probab=87.16 E-value=4.5 Score=44.33 Aligned_cols=71 Identities=15% Similarity=0.138 Sum_probs=57.1
Q ss_pred ccEEEEEEEEecCCCCee-EEEEEEcCCCeEEEEEcCeEEEeeCCeEEEEEEEEEEeeCCCCCeEEEEEEEE
Q 043420 612 TTQVFHRTVTNVGSAVST-YRAVVYTRPGLMIKVQPSVLYFKSLYQKQSFVVTVTANVGKSVNMISASLVWD 682 (702)
Q Consensus 612 ~~~t~~rtvtnvg~~~~t-y~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~~~~~ 682 (702)
...++...+.|.|+.+.| -.+++..|.|-++.|+|.++---++||++++.+|++++.....+-++=.|+-+
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~k 468 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAK 468 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEe
Confidence 467888899999998877 78999999999999999988666999999999999997644333344455443
No 79
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=86.58 E-value=0.56 Score=46.99 Aligned_cols=35 Identities=29% Similarity=0.208 Sum_probs=30.4
Q ss_pred ccCcCCeEEEEee-----cchhhhhhhcCceEEEEeeCCC
Q 043420 352 EKLVQGKIVLCDE-----LNDGFGAATARAVGSVMQGNDD 386 (702)
Q Consensus 352 ~~~~~gkivl~~~-----~~~~~~~~~aGa~g~i~~~~~~ 386 (702)
.-+++|||+|+++ .+|..+++.+||+|+|+|++..
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 5579999999975 4689999999999999999764
No 80
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=82.66 E-value=14 Score=33.09 Aligned_cols=68 Identities=16% Similarity=0.036 Sum_probs=46.5
Q ss_pred cEEEEEEEEecCCCCeeEEEEEEc---CC----CeEEEEEcCeEEEeeCCeEEEEEEEEEEeeCCCCCeEEEEEEEE
Q 043420 613 TQVFHRTVTNVGSAVSTYRAVVYT---RP----GLMIKVQPSVLYFKSLYQKQSFVVTVTANVGKSVNMISASLVWD 682 (702)
Q Consensus 613 ~~t~~rtvtnvg~~~~ty~~~~~~---~~----g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~~~~~ 682 (702)
..+.+.+|+|.++.+..+.+.+.. .. .-.+-|+|..+.+ ++|+++++.| +.....+.+....=+|.++
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 356788999999988888888775 11 1256789999999 8999999999 6633323333222356654
No 81
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.06 E-value=5.4 Score=42.57 Aligned_cols=76 Identities=12% Similarity=0.132 Sum_probs=57.0
Q ss_pred CCCCccCCCCCC---ccCcCCeEEEEee-----cchhhhhhhcCceEEEEeeCCCCCC-------CcccCcceEEecchh
Q 043420 340 SNSRFCSLGSLD---EKLVQGKIVLCDE-----LNDGFGAATARAVGSVMQGNDDRDV-------AYSFPLPNSYLDLYD 404 (702)
Q Consensus 340 ~~~~~c~~~~~~---~~~~~gkivl~~~-----~~~~~~~~~aGa~g~i~~~~~~~~~-------~~~~~~p~~~i~~~~ 404 (702)
+..++|.+...- .......++|+.| .+|..+++++|..++|+||+..... .....++.++++..-
T Consensus 60 ep~~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ 139 (348)
T KOG4628|consen 60 EPLNACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFS 139 (348)
T ss_pred CCccccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeeh
Confidence 344667765442 3445677888877 7899999999999999999876542 255678999999999
Q ss_pred HHHHHHHHhcC
Q 043420 405 GSKIASYLNST 415 (702)
Q Consensus 405 ~~~l~~~~~~~ 415 (702)
|+.|+.|...+
T Consensus 140 ge~l~~~~~~~ 150 (348)
T KOG4628|consen 140 GELLSSYAGRT 150 (348)
T ss_pred HHHHHHhhccc
Confidence 99998875544
No 82
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=74.95 E-value=11 Score=41.96 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=47.7
Q ss_pred cEEEEEEEEecCCCCeeEEEEEEcCCCeEEEEEcCeEEEeeCCeEEEEEEEEEEee
Q 043420 613 TQVFHRTVTNVGSAVSTYRAVVYTRPGLMIKVQPSVLYFKSLYQKQSFVVTVTANV 668 (702)
Q Consensus 613 ~~t~~rtvtnvg~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~ 668 (702)
.-..+..+.|..+.+.+|+++++.+++.++...++.+++ ++||+.++.|+|.++.
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 455778899999999999999999999998875458888 8899999999998865
No 83
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=70.70 E-value=6.4 Score=37.33 Aligned_cols=38 Identities=21% Similarity=0.111 Sum_probs=30.5
Q ss_pred CCCccCcCCeEEEEeec------------------------chhhhhhhcCceEEEEeeCCC
Q 043420 349 SLDEKLVQGKIVLCDEL------------------------NDGFGAATARAVGSVMQGNDD 386 (702)
Q Consensus 349 ~~~~~~~~gkivl~~~~------------------------~~~~~~~~aGa~g~i~~~~~~ 386 (702)
.+..-|++||||++... .|...+.+.||.|+|++....
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 44567899999998741 278899999999999997654
No 84
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=69.65 E-value=33 Score=29.77 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=40.0
Q ss_pred ccEEEEEEEEecCCCCeeEEEEEEcCCCeEEEEEcCeEEEeeCCeEEEEEEEEEEe
Q 043420 612 TTQVFHRTVTNVGSAVSTYRAVVYTRPGLMIKVQPSVLYFKSLYQKQSFVVTVTAN 667 (702)
Q Consensus 612 ~~~t~~rtvtnvg~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~ 667 (702)
...+...+|+|.++..--|.+....|..+ .|.|..-.+ .+|++.++.|++...
T Consensus 18 ~~~~~~l~l~N~s~~~i~fKiktt~~~~y--~v~P~~G~i-~p~~~~~i~I~~~~~ 70 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPIAFKIKTTNPNRY--RVKPSYGII-EPGESVEITITFQPF 70 (109)
T ss_dssp S-EEEEEEEEE-SSSEEEEEEEES-TTTE--EEESSEEEE--TTEEEEEEEEE-SS
T ss_pred ceEEEEEEEECCCCCcEEEEEEcCCCceE--EecCCCEEE-CCCCEEEEEEEEEec
Confidence 34667779999999988999998888776 457998878 889999999988763
No 85
>COG1470 Predicted membrane protein [Function unknown]
Probab=63.95 E-value=78 Score=35.14 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=44.5
Q ss_pred ccEEEEEEEEecCCCCeeEEEEEE-cCCCeEEEEEcC-----eEEEeeCCeEEEEEEEEEEee
Q 043420 612 TTQVFHRTVTNVGSAVSTYRAVVY-TRPGLMIKVQPS-----VLYFKSLYQKQSFVVTVTANV 668 (702)
Q Consensus 612 ~~~t~~rtvtnvg~~~~ty~~~~~-~~~g~~v~v~p~-----~l~~~~~g~~~~~~vt~~~~~ 668 (702)
.+..++.++.|.|..+.+|.++.. .|+|......=. +|.+ .+||+++++|.|....
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~ 345 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSL 345 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCC
Confidence 356788889999999999999999 688776655433 4555 7899999999988754
No 86
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=60.43 E-value=80 Score=26.53 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=32.5
Q ss_pred ccEEEEEEEEecCCCC-eeEEEEEEcCCCeEEEEEcCeE-EEeeCCeEEEEEEEEEEe
Q 043420 612 TTQVFHRTVTNVGSAV-STYRAVVYTRPGLMIKVQPSVL-YFKSLYQKQSFVVTVTAN 667 (702)
Q Consensus 612 ~~~t~~rtvtnvg~~~-~ty~~~~~~~~g~~v~v~p~~l-~~~~~g~~~~~~vt~~~~ 667 (702)
...+++.+|+|.|... ..+.+.+... |..+ .-..+ .+ ++|+++++++++...
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB--TTEEEEEEEEEE-S
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCc-CCCcEEEEEEEEEeC
Confidence 5788999999999864 4577776554 3222 12222 45 789999888888775
No 87
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=58.98 E-value=44 Score=30.95 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=47.1
Q ss_pred EEEEEEEEecCCCCe-eEEEEEEcCCCeEEEEEcCeEEEeeCCeEEEEEEEEEEeeCCCCCeEEEEEEEE
Q 043420 614 QVFHRTVTNVGSAVS-TYRAVVYTRPGLMIKVQPSVLYFKSLYQKQSFVVTVTANVGKSVNMISASLVWD 682 (702)
Q Consensus 614 ~t~~rtvtnvg~~~~-ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~~~~~ 682 (702)
..+...+-|--+... .-++.......+++--.|+.+++ .+++.+++..++.+.+. ..+..||.|++.
T Consensus 71 IvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsSt-etGvIfG~I~Yd 138 (140)
T PF07718_consen 71 IVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVSST-ETGVIFGNIVYD 138 (140)
T ss_pred EEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEec-cCCEEEEEEEEe
Confidence 444444555433211 23445555667888888999999 88999999999999764 447899999985
No 88
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=56.25 E-value=34 Score=28.28 Aligned_cols=40 Identities=15% Similarity=0.259 Sum_probs=29.0
Q ss_pred EEEEEcCeEEEeeCCeEEEEEEEEEEeeCCCCCeEEEEEEEECCC
Q 043420 641 MIKVQPSVLYFKSLYQKQSFVVTVTANVGKSVNMISASLVWDDGV 685 (702)
Q Consensus 641 ~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~~~~~~~~ 685 (702)
.+++.|..+++ ..|+++.|+++++... .. - ...++|+...
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~--~~-~-~~~v~w~Ssn 43 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSS--AK-V-TGKVTWTSSN 43 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCC--CC-c-cceEEEEECC
Confidence 56789999999 7899999999965332 11 2 5678887544
No 89
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=55.34 E-value=18 Score=33.74 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=56.1
Q ss_pred CCCCccCCCCCCccCcCCeEEEEee-----cchhhhhhhcCceEEEEeeCCCCCCC-------------cccCcceEEec
Q 043420 340 SNSRFCSLGSLDEKLVQGKIVLCDE-----LNDGFGAATARAVGSVMQGNDDRDVA-------------YSFPLPNSYLD 401 (702)
Q Consensus 340 ~~~~~c~~~~~~~~~~~gkivl~~~-----~~~~~~~~~aGa~g~i~~~~~~~~~~-------------~~~~~p~~~i~ 401 (702)
++...|.... +.-...|.+.|++| ..|..+++++||..+|+.++...... +...+|+..+-
T Consensus 72 dPp~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fll 150 (193)
T KOG3920|consen 72 DPPHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLL 150 (193)
T ss_pred CChhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEe
Confidence 4556787543 23356788999887 67889999999999999887654322 45678999888
Q ss_pred chhHHHHHHHHhcCCCcEE
Q 043420 402 LYDGSKIASYLNSTSIPTA 420 (702)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~ 420 (702)
..+|..++.-++.-...-+
T Consensus 151 g~~Gy~ir~sL~r~~r~ha 169 (193)
T KOG3920|consen 151 GVTGYYIRVSLKRYFRDHA 169 (193)
T ss_pred ccceEEEehhHHHhCCccE
Confidence 8888766665554443333
No 90
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=44.84 E-value=68 Score=26.77 Aligned_cols=54 Identities=20% Similarity=0.102 Sum_probs=24.1
Q ss_pred EEEEEEEEecCCCCe--------eEEEEEEcCCC---------eEEEEEcCeEEEeeCCeEEEEEEEEEEee
Q 043420 614 QVFHRTVTNVGSAVS--------TYRAVVYTRPG---------LMIKVQPSVLYFKSLYQKQSFVVTVTANV 668 (702)
Q Consensus 614 ~t~~rtvtnvg~~~~--------ty~~~~~~~~g---------~~v~v~p~~l~~~~~g~~~~~~vt~~~~~ 668 (702)
..++.+|+|.++.+. .|-+.+.-+.| ...+-.-...++ ++||+++|+.++....
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l-~pGe~~~~~~~~~~~~ 72 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETL-EPGESLTYEETWDLKD 72 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE--TT-EEEEEEEESS--
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEE-CCCCEEEEEEEECCCC
Confidence 345666777766433 33344443333 222222345567 8899999988887654
No 91
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=44.26 E-value=42 Score=29.08 Aligned_cols=49 Identities=14% Similarity=0.250 Sum_probs=30.5
Q ss_pred ccEEEEEEEEecCCCCee----EEEEEEcC---------CCeEEEEEcC--eEEEeeCCeEEEEEE
Q 043420 612 TTQVFHRTVTNVGSAVST----YRAVVYTR---------PGLMIKVQPS--VLYFKSLYQKQSFVV 662 (702)
Q Consensus 612 ~~~t~~rtvtnvg~~~~t----y~~~~~~~---------~g~~v~v~p~--~l~~~~~g~~~~~~v 662 (702)
+..+++.+|+|.|+.+-. |.+--..+ -|..+.+ |+ .+.| ++|+++++++
T Consensus 18 gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~L 81 (101)
T cd00407 18 GREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDI-PAGTAVRF-EPGEEKEVEL 81 (101)
T ss_pred CCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecc-cCCCeEEE-CCCCeEEEEE
Confidence 456788899999996532 33221111 2555555 43 5678 7899988655
No 92
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=43.87 E-value=90 Score=22.64 Aligned_cols=43 Identities=16% Similarity=-0.024 Sum_probs=24.4
Q ss_pred EEEecCCCCeeEEEEEEcCCCeEEEEEcCeEEEeeCCeEEEEEEEE
Q 043420 619 TVTNVGSAVSTYRAVVYTRPGLMIKVQPSVLYFKSLYQKQSFVVTV 664 (702)
Q Consensus 619 tvtnvg~~~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~vt~ 664 (702)
+++|.|+.+..-+-....=.=..++ .+.=.+ ++||+..++|++
T Consensus 3 ~~~N~g~~~L~I~~v~tsCgCt~~~--~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 3 EFTNTGDSPLVITDVQTSCGCTTAE--YSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEECCCCcEEEEEeeEccCCEEee--CCcceE-CCCCEEEEEEEC
Confidence 5788888665433222221223333 333335 789999988874
No 93
>PRK13203 ureB urease subunit beta; Reviewed
Probab=43.62 E-value=38 Score=29.37 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=30.3
Q ss_pred ccEEEEEEEEecCCCCee----EEEEEEcC---------CCeEEEEEcC--eEEEeeCCeEEEEEE
Q 043420 612 TTQVFHRTVTNVGSAVST----YRAVVYTR---------PGLMIKVQPS--VLYFKSLYQKQSFVV 662 (702)
Q Consensus 612 ~~~t~~rtvtnvg~~~~t----y~~~~~~~---------~g~~v~v~p~--~l~~~~~g~~~~~~v 662 (702)
+..+++.+|+|.|+.+-. |.+--..+ -|..+.+ |+ .+.| ++|+++++++
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~L 81 (102)
T PRK13203 18 GRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNI-PAGTAVRF-EPGQTREVEL 81 (102)
T ss_pred CCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCccccc-CCCCeEeE-CCCCeEEEEE
Confidence 456788899999997532 33221111 2555554 43 5678 7899988655
No 94
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=41.19 E-value=28 Score=24.83 Aligned_cols=24 Identities=13% Similarity=0.358 Sum_probs=19.1
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhcC
Q 043420 500 AAYVKSFYPSWSPAAIKSALMTTA 523 (702)
Q Consensus 500 aALl~q~~P~lsp~~ik~~L~~TA 523 (702)
+--|++.+|+|++..|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 346889999999999999996653
No 95
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=39.88 E-value=51 Score=28.54 Aligned_cols=49 Identities=18% Similarity=0.286 Sum_probs=30.1
Q ss_pred ccEEEEEEEEecCCCCee----EEEEEEcC---------CCeEEEEEcC--eEEEeeCCeEEEEEE
Q 043420 612 TTQVFHRTVTNVGSAVST----YRAVVYTR---------PGLMIKVQPS--VLYFKSLYQKQSFVV 662 (702)
Q Consensus 612 ~~~t~~rtvtnvg~~~~t----y~~~~~~~---------~g~~v~v~p~--~l~~~~~g~~~~~~v 662 (702)
+..+++.+|+|.|+.+-. |.+--..+ -|..+.+ |+ .+.| ++|+++++++
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~L 81 (101)
T TIGR00192 18 GRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDI-PSGTAVRF-EPGEEKSVEL 81 (101)
T ss_pred CCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCccccc-CCCCeEeE-CCCCeEEEEE
Confidence 456788899999986532 33221111 2555554 43 5678 8899998655
No 96
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=38.83 E-value=56 Score=28.25 Aligned_cols=49 Identities=16% Similarity=0.244 Sum_probs=25.9
Q ss_pred ccEEEEEEEEecCCCCee----EEEEEEcC---------CCeEEEEEcC--eEEEeeCCeEEEEEE
Q 043420 612 TTQVFHRTVTNVGSAVST----YRAVVYTR---------PGLMIKVQPS--VLYFKSLYQKQSFVV 662 (702)
Q Consensus 612 ~~~t~~rtvtnvg~~~~t----y~~~~~~~---------~g~~v~v~p~--~l~~~~~g~~~~~~v 662 (702)
+..+++.+|+|.|+.+-. |.+--..+ -|+.+.+ |+ .+.| ++|+++++++
T Consensus 17 gr~~~~l~V~N~GDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-PaGTavRF-EPG~~k~V~L 80 (100)
T PF00699_consen 17 GRERITLEVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDI-PAGTAVRF-EPGDTKEVEL 80 (100)
T ss_dssp TSEEEEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-S-STT-EEEE--TT-EEEEEE
T ss_pred CCcEEEEEEEeCCCcceEEccccCHHHHhHHhhhhHHHhCCcccCc-CCCCeEEE-CCCCcEEEEE
Confidence 567889999999997532 21110001 2555555 43 4677 7899888654
No 97
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=37.51 E-value=76 Score=38.29 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=33.8
Q ss_pred ccEEEEEEEEecCCCCeeEEEEE--EcCCCeEEEEEc-------CeEEEeeCCeEEEEEEEEEEe
Q 043420 612 TTQVFHRTVTNVGSAVSTYRAVV--YTRPGLMIKVQP-------SVLYFKSLYQKQSFVVTVTAN 667 (702)
Q Consensus 612 ~~~t~~rtvtnvg~~~~ty~~~~--~~~~g~~v~v~p-------~~l~~~~~g~~~~~~vt~~~~ 667 (702)
...+++.+|||+|+.+..-.+.+ ..|.+ .+. .| +++.+ ++||++++++++...
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~-~~~-~P~k~L~gF~Kv~L-~pGes~~V~~~l~~~ 728 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTA-SMS-RPVKELKGFEKIML-KPGETQTVSFPIDIE 728 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCC-CCC-CHHHhccCceeEeE-CCCCeEEEEEeecHH
Confidence 46889999999998655444433 33322 111 23 23445 899999988888764
No 98
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=37.45 E-value=1.7e+02 Score=25.77 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=43.0
Q ss_pred cCCeEEEEEEecCCCCCHHHHHHHHHHHHHCCCCEEEEeecCCCCCC----CccCHHHHHHHHHHhCCCEEEE
Q 043420 196 PSARIAVYKICWFDGCADADILAAFDDAIADGVDIISISVGSFSAVN----YFEDTIAIGSFHAMKKGILTSN 264 (702)
Q Consensus 196 P~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~gvdVIn~SlG~~~~~~----~~~~~~~~a~~~a~~~Gi~vV~ 264 (702)
++++|+.+- .+.||....++.-++++.+.|+|+|-+|-......+ ..-+.+...+.++. |+-||-
T Consensus 36 ~~~elvgf~--~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~--gi~VV~ 104 (107)
T PF08821_consen 36 EDVELVGFF--TCGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKF--GIEVVE 104 (107)
T ss_pred CCeEEEEEe--eCCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHh--CCCEee
Confidence 467887753 445688999999999999999999999877653221 12333333333222 887774
No 99
>PRK13202 ureB urease subunit beta; Reviewed
Probab=36.52 E-value=64 Score=28.09 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=29.4
Q ss_pred EEEEEEEEecCCCCe----eEEEEEEcC---------CCeEEEEEcC--eEEEeeCCeEEEEEE
Q 043420 614 QVFHRTVTNVGSAVS----TYRAVVYTR---------PGLMIKVQPS--VLYFKSLYQKQSFVV 662 (702)
Q Consensus 614 ~t~~rtvtnvg~~~~----ty~~~~~~~---------~g~~v~v~p~--~l~~~~~g~~~~~~v 662 (702)
.+++.+|+|.|+.+- -|.+--..+ -|..+.+ |+ .+.| ++|+++++++
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~L 82 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDI-PAATAVRF-EPGIPQIVGL 82 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCccccc-CCCCeEEE-CCCCeEEEEE
Confidence 578889999999753 243321111 2555554 43 5678 7899988655
No 100
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.06 E-value=1.6e+02 Score=31.83 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=36.9
Q ss_pred cEEEEEEEEecCCCCeeEEEEEEc-CCCeEEEEEcCeEEEe-eCCeEEEEEEEEEEee
Q 043420 613 TQVFHRTVTNVGSAVSTYRAVVYT-RPGLMIKVQPSVLYFK-SLYQKQSFVVTVTANV 668 (702)
Q Consensus 613 ~~t~~rtvtnvg~~~~ty~~~~~~-~~g~~v~v~p~~l~~~-~~g~~~~~~vt~~~~~ 668 (702)
...+..-++|.+.....-.+.++. |.|++++|.|+..+++ ...+++.|.|++++..
T Consensus 91 dFkV~ADLt~a~~Gt~evkl~ve~l~~~ltvsV~P~~~~Vti~kk~tkk~~V~vei~~ 148 (403)
T COG4856 91 DFKVVADLTHAGVGTHEVKLQVEGLPDGLTVSVNPEKATVTIEKKVTKKFPVSVEIDQ 148 (403)
T ss_pred CeEEEEEhhhcCCCceEeeeEeecCCCCceEEEccceeEEEEeeeeEEEEeeeEEEcH
Confidence 355555677776644444444444 7899999999976653 4456677888877653
No 101
>PRK13205 ureB urease subunit beta; Reviewed
Probab=34.22 E-value=63 Score=30.05 Aligned_cols=49 Identities=10% Similarity=0.161 Sum_probs=30.9
Q ss_pred ccEEEEEEEEecCCCCe----eEEEEEEcC---------CCeEEEEEcC--eEEEeeCCeEEEEEE
Q 043420 612 TTQVFHRTVTNVGSAVS----TYRAVVYTR---------PGLMIKVQPS--VLYFKSLYQKQSFVV 662 (702)
Q Consensus 612 ~~~t~~rtvtnvg~~~~----ty~~~~~~~---------~g~~v~v~p~--~l~~~~~g~~~~~~v 662 (702)
+..+++.+|+|.|+.+- -|.+--..+ -|+.+.+ |+ .+.| ++|+++++++
T Consensus 18 GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdI-PAGTAVRF-EPGe~ktV~L 81 (162)
T PRK13205 18 GREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDI-PSGTAVRL-EPGDARTVNL 81 (162)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCccccc-CCCCeEeE-CCCCeEEEEE
Confidence 45678899999999753 243321111 2555555 43 5678 7899888665
No 102
>PRK15019 CsdA-binding activator; Provisional
Probab=33.99 E-value=40 Score=31.63 Aligned_cols=33 Identities=12% Similarity=0.011 Sum_probs=28.1
Q ss_pred eEeccccchhHHHHHHHHHHHHhCCCCCHHHHHH
Q 043420 484 NIISGTSMSCPHATAAAAYVKSFYPSWSPAAIKS 517 (702)
Q Consensus 484 ~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~ik~ 517 (702)
..+.|.| =|+.|-|.+|||.+.+-+.+|++|.+
T Consensus 77 ~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 77 MHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 4455665 58999999999999999999999876
No 103
>PRK13201 ureB urease subunit beta; Reviewed
Probab=33.54 E-value=68 Score=29.19 Aligned_cols=49 Identities=14% Similarity=0.145 Sum_probs=30.4
Q ss_pred ccEEEEEEEEecCCCCee----EEEEEEcC---------CCeEEEEEcC--eEEEeeCCeEEEEEE
Q 043420 612 TTQVFHRTVTNVGSAVST----YRAVVYTR---------PGLMIKVQPS--VLYFKSLYQKQSFVV 662 (702)
Q Consensus 612 ~~~t~~rtvtnvg~~~~t----y~~~~~~~---------~g~~v~v~p~--~l~~~~~g~~~~~~v 662 (702)
+..+++.+|+|.|+.+-. |.+--..+ -|+.+.+ |+ .+.| ++|+++++++
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdI-PAGTAVRF-EPG~~k~V~L 81 (136)
T PRK13201 18 HHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDI-PAGAAVRF-EPGDKKEVQL 81 (136)
T ss_pred CCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCccccc-CCCCeEeE-CCCCeEEEEE
Confidence 456788899999987532 33221111 2555555 43 5678 7899988655
No 104
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=32.55 E-value=44 Score=30.99 Aligned_cols=35 Identities=11% Similarity=-0.001 Sum_probs=29.1
Q ss_pred ceEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHH
Q 043420 483 FNIISGTSMSCPHATAAAAYVKSFYPSWSPAAIKSA 518 (702)
Q Consensus 483 y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~ik~~ 518 (702)
-..+.|.| =|+.|-|.+|||++.+-+.+|++|.+.
T Consensus 71 ~~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 71 TLHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 34556666 489999999999999999999998743
No 105
>PLN03080 Probable beta-xylosidase; Provisional
Probab=30.93 E-value=69 Score=38.67 Aligned_cols=76 Identities=14% Similarity=0.108 Sum_probs=43.5
Q ss_pred cEEEEEEEEecCCCCeeEEEEEE--cCCCeEEEEEc-------CeEEEeeCCeEEEEEEEEEE-eeC----CCCCeE--E
Q 043420 613 TQVFHRTVTNVGSAVSTYRAVVY--TRPGLMIKVQP-------SVLYFKSLYQKQSFVVTVTA-NVG----KSVNMI--S 676 (702)
Q Consensus 613 ~~t~~rtvtnvg~~~~ty~~~~~--~~~g~~v~v~p-------~~l~~~~~g~~~~~~vt~~~-~~~----~~~~~~--~ 676 (702)
..+++.+|||+|+......+.+- .|.+ .+. .| +++.+ ++||++++++++.. ... ..+.|. .
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~-~~~-~P~k~L~gF~kv~L-~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~ 761 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPV-VPG-VPEKQLVGFDRVHT-ASGRSTETEIVVDPCKHLSVANEEGKRVLPL 761 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCcc-CCC-CcchhccCcEeEee-CCCCEEEEEEEeCchHHceEEcCCCcEEEeC
Confidence 47899999999987666555443 2321 111 12 23345 78999998888875 321 122332 3
Q ss_pred EEEEE--ECCCceEEeE
Q 043420 677 ASLVW--DDGVHHVRSP 691 (702)
Q Consensus 677 G~~~~--~~~~~~v~~P 691 (702)
|...+ -+..|.|+++
T Consensus 762 G~y~l~vG~~~~~~~~~ 778 (779)
T PLN03080 762 GDHVLMLGDLEHSLSIE 778 (779)
T ss_pred ccEEEEEeCCccceEEe
Confidence 55433 2456766654
No 106
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=30.88 E-value=1.7e+02 Score=29.71 Aligned_cols=66 Identities=8% Similarity=-0.005 Sum_probs=43.5
Q ss_pred cEEEEEEEEecCCCCeeEEEEEEc---C---CC----------eEEEEEcCeEEEeeCCeEEEEEEEEEEeeCCCCCeEE
Q 043420 613 TQVFHRTVTNVGSAVSTYRAVVYT---R---PG----------LMIKVQPSVLYFKSLYQKQSFVVTVTANVGKSVNMIS 676 (702)
Q Consensus 613 ~~t~~rtvtnvg~~~~ty~~~~~~---~---~g----------~~v~v~p~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~ 676 (702)
......+|.|.|+.+..+++++.. | .+ -++-++|..|++ ++|+++.+.|.-.-. +..+.++
T Consensus 32 ~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L-~pg~~q~IRli~lg~--~~kE~~Y 108 (234)
T PRK15308 32 EEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFAL-PAGTTRTVRVISLQA--PEREEAW 108 (234)
T ss_pred cceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEE-CCCCeEEEEEEEcCC--CCcEEEE
Confidence 344567788999888877776533 2 11 156789999999 899999987754432 2223333
Q ss_pred EEEEEE
Q 043420 677 ASLVWD 682 (702)
Q Consensus 677 G~~~~~ 682 (702)
+|.|.
T Consensus 109 -Rl~~~ 113 (234)
T PRK15308 109 -RVYFE 113 (234)
T ss_pred -EEEEE
Confidence 66664
No 107
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=29.69 E-value=44 Score=22.63 Aligned_cols=13 Identities=15% Similarity=0.278 Sum_probs=10.7
Q ss_pred chhHHHHHHHHHH
Q 043420 491 MSCPHATAAAAYV 503 (702)
Q Consensus 491 mAaP~VAG~aALl 503 (702)
.|||.+||++|-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998743
No 108
>PRK13204 ureB urease subunit beta; Reviewed
Probab=29.68 E-value=81 Score=29.45 Aligned_cols=49 Identities=18% Similarity=0.252 Sum_probs=30.6
Q ss_pred ccEEEEEEEEecCCCCee----EEEEEEcC---------CCeEEEEEcC--eEEEeeCCeEEEEEE
Q 043420 612 TTQVFHRTVTNVGSAVST----YRAVVYTR---------PGLMIKVQPS--VLYFKSLYQKQSFVV 662 (702)
Q Consensus 612 ~~~t~~rtvtnvg~~~~t----y~~~~~~~---------~g~~v~v~p~--~l~~~~~g~~~~~~v 662 (702)
+..+++.+|+|.|+.+-. |.+--..+ -|..+.+ |+ .+.| ++|+++++++
T Consensus 41 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdI-PAGTAVRF-EPG~~k~V~L 104 (159)
T PRK13204 41 GRPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDI-PANTAVRF-EPGDEKEVTL 104 (159)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCccccc-CCCCeEeE-CCCCeeEEEE
Confidence 456788999999997532 33221111 2555555 43 5678 7899888655
No 109
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=29.66 E-value=46 Score=30.85 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=28.0
Q ss_pred eEeccccchhHHHHHHHHHHHHhCCCCCHHHHHH
Q 043420 484 NIISGTSMSCPHATAAAAYVKSFYPSWSPAAIKS 517 (702)
Q Consensus 484 ~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~ik~ 517 (702)
..+.|.| =|+.|-|.+|||.+.+-+.+|++|.+
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 4455666 58999999999999999999999864
No 110
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=29.42 E-value=4.3e+02 Score=23.85 Aligned_cols=78 Identities=13% Similarity=0.001 Sum_probs=44.3
Q ss_pred ccEEEEEEEEecCCCCeeEEEE------EEcCCCe----EEEE---EcCeEEEeeCCeEEEEEEEEEEeeCCCC--CeEE
Q 043420 612 TTQVFHRTVTNVGSAVSTYRAV------VYTRPGL----MIKV---QPSVLYFKSLYQKQSFVVTVTANVGKSV--NMIS 676 (702)
Q Consensus 612 ~~~t~~rtvtnvg~~~~ty~~~------~~~~~g~----~v~v---~p~~l~~~~~g~~~~~~vt~~~~~~~~~--~~~~ 676 (702)
+...+..++||.|.. +.++. .....|. ...- .|..+++ ++|++..+.|+......... ....
T Consensus 18 g~~~~~l~~tN~s~~--~C~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL-~PG~sA~a~l~~~~~~~~~~~~~~~~ 94 (131)
T PF14016_consen 18 GQRHATLTFTNTSDT--PCTLYGYPGVALVDADGAPLGVPAVREGPPPRPVTL-APGGSAYAGLRWSNVGSGGGCKPVTP 94 (131)
T ss_pred CccEEEEEEEECCCC--cEEeccCCcEEEECCCCCcCCccccccCCCCCcEEE-CCCCEEEEEEEEecCCCCCCcCcccc
Confidence 566888899999874 33332 1111222 1111 3567888 88999999999987543222 1222
Q ss_pred EEEEE--ECCCceEEeEE
Q 043420 677 ASLVW--DDGVHHVRSPV 692 (702)
Q Consensus 677 G~~~~--~~~~~~v~~P~ 692 (702)
..|.. -++...+++|+
T Consensus 95 ~~l~V~~p~~~~~~~v~~ 112 (131)
T PF14016_consen 95 AGLTVTPPGGTAPVTVPW 112 (131)
T ss_pred CEEEEECCCCCccEEEeC
Confidence 23333 35556666654
No 111
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=29.00 E-value=48 Score=25.38 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=22.5
Q ss_pred ceEeccccchhHHHHHHH------HHHHHhCCCCCHHHHHHHHH
Q 043420 483 FNIISGTSMSCPHATAAA------AYVKSFYPSWSPAAIKSALM 520 (702)
Q Consensus 483 y~~~sGTSmAaP~VAG~a------ALl~q~~P~lsp~~ik~~L~ 520 (702)
--.+.||=+..=.|.... .-|.+.||+|++++|+++|.
T Consensus 11 ~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 11 QPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp --EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred cceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 345567766655555442 23566799999999999984
No 112
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=28.87 E-value=2.2e+02 Score=21.49 Aligned_cols=38 Identities=21% Similarity=0.164 Sum_probs=26.1
Q ss_pred ccEEEEEEEEecCCCCee-EEEEEEcCCCeEEEEEcCeEEE
Q 043420 612 TTQVFHRTVTNVGSAVST-YRAVVYTRPGLMIKVQPSVLYF 651 (702)
Q Consensus 612 ~~~t~~rtvtnvg~~~~t-y~~~~~~~~g~~v~v~p~~l~~ 651 (702)
...+++.+++|.|..+.+ ..++-..|+|+.. .|.++++
T Consensus 12 d~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~--v~~S~~~ 50 (53)
T TIGR01451 12 DTITYTITVTNNGNVPATNVVVTDILPSGTTF--VSNSVTV 50 (53)
T ss_pred CEEEEEEEEEECCCCceEeEEEEEcCCCCCEE--EeCcEEE
Confidence 468899999999986654 4444455777754 4666555
No 113
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=27.92 E-value=86 Score=22.34 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.3
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhcC
Q 043420 499 AAAYVKSFYPSWSPAAIKSALMTTA 523 (702)
Q Consensus 499 ~aALl~q~~P~lsp~~ik~~L~~TA 523 (702)
.+..|++.+|+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4567899999999999999998543
No 114
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=27.54 E-value=56 Score=30.38 Aligned_cols=34 Identities=18% Similarity=0.047 Sum_probs=27.2
Q ss_pred ceEeccccchhHHHHHHHHHHHHhCCCCCHHHHHH
Q 043420 483 FNIISGTSMSCPHATAAAAYVKSFYPSWSPAAIKS 517 (702)
Q Consensus 483 y~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~ik~ 517 (702)
-..+.|=|= |++|.|.+|++++.+-..||++|..
T Consensus 71 ~~~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 71 TLHFFGDSD-ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred eEEEeccch-hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 344455554 7999999999999999999999853
No 115
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=27.34 E-value=63 Score=29.37 Aligned_cols=34 Identities=12% Similarity=0.010 Sum_probs=27.2
Q ss_pred eEeccccchhHHHHHHHHHHHHhCCCCCHHHHHHH
Q 043420 484 NIISGTSMSCPHATAAAAYVKSFYPSWSPAAIKSA 518 (702)
Q Consensus 484 ~~~sGTSmAaP~VAG~aALl~q~~P~lsp~~ik~~ 518 (702)
..+.|.|= |+.|-|++|||++.+-+.+|++|.+.
T Consensus 58 ~~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 58 VHFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 45566665 67999999999999999999998653
No 116
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=25.23 E-value=4.4e+02 Score=22.63 Aligned_cols=31 Identities=26% Similarity=0.152 Sum_probs=24.3
Q ss_pred cEEEEEEEEecCCCC-eeEEEEEEcCCCeEEE
Q 043420 613 TQVFHRTVTNVGSAV-STYRAVVYTRPGLMIK 643 (702)
Q Consensus 613 ~~t~~rtvtnvg~~~-~ty~~~~~~~~g~~v~ 643 (702)
-.+...+|+|.++.+ ..|++++..|.+.++.
T Consensus 14 Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~ 45 (101)
T PF00553_consen 14 GFQGEVTVTNNGSSPINGWTVTFTFPSGQTIT 45 (101)
T ss_dssp EEEEEEEEEESSSSTEESEEEEEEESTTEEEE
T ss_pred CeEEEEEEEECCCCccCCEEEEEEeCCCCEEe
Confidence 456678999999876 4699999999776654
No 117
>PRK13198 ureB urease subunit beta; Reviewed
Probab=24.81 E-value=1.1e+02 Score=28.52 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=30.4
Q ss_pred ccEEEEEEEEecCCCCee----EEEEEEcC---------CCeEEEEEcC--eEEEeeCCeEEEEEE
Q 043420 612 TTQVFHRTVTNVGSAVST----YRAVVYTR---------PGLMIKVQPS--VLYFKSLYQKQSFVV 662 (702)
Q Consensus 612 ~~~t~~rtvtnvg~~~~t----y~~~~~~~---------~g~~v~v~p~--~l~~~~~g~~~~~~v 662 (702)
+..+++.+|+|.|+.+-. |.+--..+ -|..+.+ |+ .+.| ++|+++++++
T Consensus 46 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdI-PAGTAVRF-EPG~~k~V~L 109 (158)
T PRK13198 46 NKPVTKVKVRNTGDRPIQVGSHFHFFEVNRALEFDRAAAYGKRLNI-SSTTAIRF-EPGDETEVPL 109 (158)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCccccc-CCCCeEee-CCCCeeEEEE
Confidence 456788899999997532 33221111 2555554 43 5678 7899888655
No 118
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=24.36 E-value=1.1e+02 Score=32.37 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=49.2
Q ss_pred eeecccCCeEEEEEEecCCC-------CCHH----------HHHHHHHHHHHCCCCEEEEeecCCCC-----------CC
Q 043420 191 AIGGVPSARIAVYKICWFDG-------CADA----------DILAAFDDAIADGVDIISISVGSFSA-----------VN 242 (702)
Q Consensus 191 ~~GvAP~A~l~~~kv~~~~g-------~~~~----------~i~~ai~~A~~~gvdVIn~SlG~~~~-----------~~ 242 (702)
++-+||-++|-+-..+|... +..+ .-+.-+++|...|.+||+ |.|...- ..
T Consensus 137 ~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Vis-s~GaaaksDPTrv~v~Dis~ 215 (430)
T KOG2018|consen 137 FSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVIS-STGAAAKSDPTRVNVADISE 215 (430)
T ss_pred HHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEe-ccCccccCCCceeehhhccc
Confidence 47789999988776666531 1111 122345688899999996 5565421 23
Q ss_pred CccCHHHHHHHHHH-----hCCCEEEEcc
Q 043420 243 YFEDTIAIGSFHAM-----KKGILTSNSA 266 (702)
Q Consensus 243 ~~~~~~~~a~~~a~-----~~Gi~vV~AA 266 (702)
...||+++.+.+-. ..||.||+|+
T Consensus 216 t~~DPlsR~vRrrLrk~GI~~GIpVVFS~ 244 (430)
T KOG2018|consen 216 TEEDPLSRSVRRRLRKRGIEGGIPVVFSL 244 (430)
T ss_pred cccCcHHHHHHHHHHHhccccCCceEEec
Confidence 45689988877644 4688999985
No 119
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.34 E-value=5.1e+02 Score=25.17 Aligned_cols=64 Identities=16% Similarity=0.058 Sum_probs=40.0
Q ss_pred ccEEEEEEEEecCCCCeeEEEEEEc---C-CCeEEEEEc---CeEEEeeCCeEEEEEEEEEEeeCCCCCeEEEEE
Q 043420 612 TTQVFHRTVTNVGSAVSTYRAVVYT---R-PGLMIKVQP---SVLYFKSLYQKQSFVVTVTANVGKSVNMISASL 679 (702)
Q Consensus 612 ~~~t~~rtvtnvg~~~~ty~~~~~~---~-~g~~v~v~p---~~l~~~~~g~~~~~~vt~~~~~~~~~~~~~G~~ 679 (702)
...+++.+|.|+|+. .-|.+++.- | ..+++ |+- .++.--++|+..+.+++++... .+.+.++..
T Consensus 38 ~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~l-vsG~~s~~~~~i~pg~~vsh~~vv~p~~--~G~f~~~~a 108 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFEL-VSGSLSASWERIPPGENVSHSYVVRPKK--SGYFNFTPA 108 (181)
T ss_pred cEEEEEEEEEECCCC-eEEEEEEECCCCCccccEe-ccCceEEEEEEECCCCeEEEEEEEeeee--eEEEEccCE
Confidence 578999999999995 567777655 2 34443 211 1122228899888888887643 444555443
No 120
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=23.24 E-value=1e+02 Score=30.21 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=30.6
Q ss_pred ccEEEEEEEEecCCCCe----eEEEEEEcC---------CCeEEEEEcC--eEEEeeCCeEEEEEE
Q 043420 612 TTQVFHRTVTNVGSAVS----TYRAVVYTR---------PGLMIKVQPS--VLYFKSLYQKQSFVV 662 (702)
Q Consensus 612 ~~~t~~rtvtnvg~~~~----ty~~~~~~~---------~g~~v~v~p~--~l~~~~~g~~~~~~v 662 (702)
+..+++.+|+|.|+.+- -|.+--..| -|..+.+ |+ .+.| ++|+++++++
T Consensus 127 gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdI-pAGTavRF-EPG~~k~V~L 190 (208)
T PRK13192 127 GRPAVTLDVTNTGDRPIQVGSHFHFFEVNRALRFDRAAAYGMRLDI-PAGTAVRF-EPGETKEVRL 190 (208)
T ss_pred CCCEEEEEEEeCCCCceeeccccchhhcCchhhccHHHhcCccccc-CCCCeEeE-CCCCeeEEEE
Confidence 45778899999999753 343322221 2555554 43 5678 7899988655
No 121
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=22.88 E-value=2.5e+02 Score=29.72 Aligned_cols=74 Identities=23% Similarity=0.231 Sum_probs=51.2
Q ss_pred ccCCeEEEEEEecCCCCCHHHHHHHHHHHHHCC----CCEEEEeecCCCCC---CCccCHHHHHHHHHHhCCCEEEEccC
Q 043420 195 VPSARIAVYKICWFDGCADADILAAFDDAIADG----VDIISISVGSFSAV---NYFEDTIAIGSFHAMKKGILTSNSAG 267 (702)
Q Consensus 195 AP~A~l~~~kv~~~~g~~~~~i~~ai~~A~~~g----vdVIn~SlG~~~~~---~~~~~~~~~a~~~a~~~Gi~vV~AAG 267 (702)
.|.++|..|-+.-.+.....+|++||+.+-+.+ +|||-+-=|+.+-. .+.+..+++++. +.-+.|+.+-|
T Consensus 39 ~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~---~~~~PvisaIG 115 (319)
T PF02601_consen 39 NPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIA---ASPIPVISAIG 115 (319)
T ss_pred CCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHH---hCCCCEEEecC
Confidence 466777776664443377888999999998765 89999999988422 222333444333 56799999988
Q ss_pred CCCC
Q 043420 268 NSGP 271 (702)
Q Consensus 268 N~G~ 271 (702)
=+-+
T Consensus 116 He~D 119 (319)
T PF02601_consen 116 HETD 119 (319)
T ss_pred CCCC
Confidence 8744
No 122
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=22.42 E-value=1.2e+03 Score=28.72 Aligned_cols=25 Identities=8% Similarity=-0.057 Sum_probs=18.5
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhcC
Q 043420 499 AAAYVKSFYPSWSPAAIKSALMTTA 523 (702)
Q Consensus 499 ~aALl~q~~P~lsp~~ik~~L~~TA 523 (702)
+.-=++|+||+.+.+|+..+...-+
T Consensus 322 ~l~el~~~~p~~~~~~l~~~a~~~~ 346 (928)
T TIGR00845 322 ILKELKQKHPDKDLEQLEEMANYQV 346 (928)
T ss_pred HHHHHHhhCCCCCHHHHHHHHHHHH
Confidence 3444678899999999877765554
No 123
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=20.85 E-value=46 Score=15.13 Aligned_cols=6 Identities=50% Similarity=0.900 Sum_probs=3.9
Q ss_pred ccCCCC
Q 043420 438 SFSSRG 443 (702)
Q Consensus 438 ~fSS~G 443 (702)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 467766
Done!