BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043421
(326 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LEA8|EID1_ARATH Phytochrome A-associated F-box protein OS=Arabidopsis thaliana
GN=EID1 PE=1 SV=2
Length = 336
Score = 425 bits (1092), Expect = e-118, Method: Compositional matrix adjust.
Identities = 214/346 (61%), Positives = 254/346 (73%), Gaps = 30/346 (8%)
Query: 1 MAETLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPAVVA 60
MAE++FS + +DVV NIFFKL+DDPRNWARLACVC KFSS+VRN+C KT+C +IP V++
Sbjct: 1 MAESVFSCIPEDVVFNIFFKLQDDPRNWARLACVCTKFSSIVRNVCCKTQCYSAIPTVIS 60
Query: 61 DLISPNSG---------------VPPGGWSSLHKLSVCCPGLLHAGVLLENSDFGLEREL 105
DL+ PPGGW+SL+KL+VCCPGL HAG+LLENSDFGLEREL
Sbjct: 61 DLLPLPPSAAASASSSTAADSSLTPPGGWASLYKLAVCCPGLFHAGILLENSDFGLEREL 120
Query: 106 GPDSDYQSCSTSAIQPTSTTTTAEACSSNLNSVTDCSWSLFDDLYYDTVY--DKSESHDD 163
GPD + T+ + ++ S L + + WSL+DDLY DT+ +S DD
Sbjct: 121 GPDQNLDPKPTTTDLALNDEEVSKPVGSGLETTS--FWSLYDDLYTDTIPAPPPEDSIDD 178
Query: 164 DGGGDGSLVVEDVDKCEVKVGGESA--KKRKICRSFRSHLASGVWNLCREQGNKLLASRF 221
E+++ E++ G + K+RKICRS SHLASG WNL REQGNKLLASRF
Sbjct: 179 QE--------EEIETSEIRPGRDLPVRKRRKICRSLGSHLASGGWNLSREQGNKLLASRF 230
Query: 222 RGDCLYICDWPGCLHTEEKRNYMLFRGIFKNFKRSRVWRTINDGNRSKID-VNCAFCNCK 280
RGDCLYIC+WPGC+H EEKRNYMLFRG+FK+FKRSRVWRTINDGNRSK + CAFC C
Sbjct: 231 RGDCLYICNWPGCIHVEEKRNYMLFRGVFKDFKRSRVWRTINDGNRSKTSGLKCAFCLCD 290
Query: 281 ETWDLHSAFCLRRVFGYHDDGEPVVRAYVCENGHVSGAWTDLPLYT 326
ETWDLHS+FCLRRVFG+HDDGEPVVRAYVCENGHVSGAWT LPLYT
Sbjct: 291 ETWDLHSSFCLRRVFGFHDDGEPVVRAYVCENGHVSGAWTALPLYT 336
>sp|Q9LF38|EDL1_ARATH EID1-like F-box protein 1 OS=Arabidopsis thaliana GN=EDL1 PE=2 SV=1
Length = 293
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%)
Query: 9 LSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPAVVADLISPNSG 68
L++DV+L +F L +P+ A L+CVC F + + WK C P ++ DL S S
Sbjct: 22 LNEDVLLLVFQHLNWNPKLVATLSCVCRWFDDFAKRVLWKEFCKTRAPKMMLDLQSSGSH 81
Query: 69 VPPGGWSSLHKLSVCCPGLLHAGVL 93
G W +L KL + C G G+
Sbjct: 82 CIDGNWRALGKLLIYCSGCTQGGLF 106
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 210 REQGNKLLASRFRGDCLYICDWPGCLHTEEKRNYMLFRGIFKNFKRSRVWRT-INDGNRS 268
R G LL + R D LY+CD L E+ + LFRGIFK+F S+V + IN
Sbjct: 124 RTLGRSLLPPQCRTDVLYVCDPCEHLDQGEEGDVGLFRGIFKSFPTSKVRKVIINKAVPF 183
Query: 269 KIDVNCAFCNCKETWDLHSAFCLR-----RVFGYHDDGEPVVRAYVCENGHVSGAWTDLP 323
C +C K W + A + R+ Y D + +VC NGH+ G T P
Sbjct: 184 HPSEVCPYCKAK-LWSMLQAKIIPQSACIRLEAYED----CIEYFVCLNGHLLGICTLAP 238
Query: 324 L 324
L
Sbjct: 239 L 239
>sp|Q9FLZ8|EDL2_ARATH EID1-like F-box protein 2 OS=Arabidopsis thaliana GN=EDL2 PE=2 SV=1
Length = 249
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%)
Query: 9 LSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPAVVADLISPNSG 68
LS++V+ + L +P A L+CVC F L + + WK C P +++DL S S
Sbjct: 22 LSEEVLFLMVQHLNWNPNVIATLSCVCKWFDDLAKRLLWKEFCRARAPKMMSDLQSSGSH 81
Query: 69 VPPGGWSSLHKLSVCCPGLLHAGVL 93
G W +L KL + C G G+
Sbjct: 82 SVDGSWRALGKLLIYCSGSSKGGLF 106
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 53/124 (42%), Gaps = 16/124 (12%)
Query: 210 REQGNKLLASRFRGD-CLYICDWPGCLHTEEKRNYMLFRGIFKNFKRSRVWR-TINDGNR 267
R G L + R D LY+ D L E + FRGIFK+F S+V + I G
Sbjct: 123 RTSGRSFLPPQCRTDDILYVSDPCEHLDQGEDGDLGFFRGIFKSFSMSKVRKLLIKKGTP 182
Query: 268 SKIDVNCAFCNCKETWDL-------HSAFCLRRVFGYHDDGEPVVRAYVCENGHVSGAWT 320
C +C K W + SA C R+ Y D + YVC NGH+ G T
Sbjct: 183 FHPTEVCPYCKAK-LWSMLQAKMIPQSASC--RLGAYEDS----IEYYVCLNGHMLGVCT 235
Query: 321 DLPL 324
LPL
Sbjct: 236 LLPL 239
>sp|Q93ZT5|EDL3_ARATH EID1-like F-box protein 3 OS=Arabidopsis thaliana GN=EDL3 PE=2 SV=1
Length = 272
Score = 39.7 bits (91), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 10 SDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPAVVADLISPN-SG 68
++ V++ +F + D +A + +F ++ R I W+ C P +VA L + SG
Sbjct: 36 NERVLVLVFESISWDIHTLCTIASLSRRFCAIARRILWRRLCVNRAPGMVAALSGEDPSG 95
Query: 69 VPPGGWSSLHKLSVCCPG 86
GGW +L KL C G
Sbjct: 96 RIDGGWHALAKLMFFCGG 113
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 14/148 (9%)
Query: 184 GGESAKKRKICRSFRSHLASGVWNLCREQGNKLLASRFRGDCLYICDWPGCLHTEEKRNY 243
GGES + + + H A + G L R D LY+ D C H +
Sbjct: 113 GGESTRYFNLSQPTSGHFACES-RFSKTSGRFFLPKNCRRDLLYMSD--PCEHQAVGGDE 169
Query: 244 ML--FRGIFKNFKRSRVWR-TINDGNRSKIDVNCAFCNCKETWDLHSAFCL----RRVFG 296
L FRG+F+ F RS+ + + V C +C + W + +A + R G
Sbjct: 170 HLGVFRGVFREFMRSKTRECLVRRQAALEEKVRCPYCGGR-VWSMTAARLVPKSAARRLG 228
Query: 297 YHDDGEPVVRAYVCENGHVSGAWTDLPL 324
+ G + +VC NGH+ G +PL
Sbjct: 229 SREGG---LEFFVCVNGHLHGTCWLIPL 253
>sp|Q7TPD1|FBX11_MOUSE F-box only protein 11 OS=Mus musculus GN=Fbxo11 PE=2 SV=2
Length = 843
Score = 35.8 bits (81), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 3 ETLFSKLSDDVVLNIF-FKLEDDPRNWARLACVCVKFSSLVRN-ICWK 48
+ L KL D+VVL IF + LE D R ACVC +FS L + I WK
Sbjct: 69 QYLQEKLPDEVVLKIFSYLLEQD---LCRAACVCKRFSELANDPILWK 113
>sp|Q86XK2|FBX11_HUMAN F-box only protein 11 OS=Homo sapiens GN=FBXO11 PE=1 SV=3
Length = 927
Score = 35.8 bits (81), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 3 ETLFSKLSDDVVLNIF-FKLEDDPRNWARLACVCVKFSSLVRN-ICWK 48
+ L KL D+VVL IF + LE D R ACVC +FS L + I WK
Sbjct: 153 QYLQEKLPDEVVLKIFSYLLEQD---LCRAACVCKRFSELANDPILWK 197
>sp|Q7TSL3|FBX11_RAT F-box only protein 11 OS=Rattus norvegicus GN=Fbxo11 PE=2 SV=1
Length = 843
Score = 35.8 bits (81), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 3 ETLFSKLSDDVVLNIF-FKLEDDPRNWARLACVCVKFSSLVRN-ICWK 48
+ L KL D+VVL IF + LE D R ACVC +FS L + I WK
Sbjct: 69 QYLQEKLPDEVVLKIFSYLLEQD---LCRAACVCKRFSELANDPILWK 113
>sp|Q6DFV6|FN3C1_MOUSE Fibronectin type III domain containing protein 3C1 OS=Mus musculus
GN=Fndc3c1 PE=2 SV=1
Length = 1356
Score = 35.4 bits (80), Expect = 0.64, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 107 PDSDYQSC--STSAIQPTSTTTTAEACSSNLNSVTDCSWSLFDDLYYDTVYDKSES 160
PD++ S+SA P+ +T+ A CS N N++TD S S ++ + YD + ++
Sbjct: 311 PDTNTTDTITSSSAHTPSISTSNATFCSDNNNNITDSSISNYNQVTYDETHKPPDA 366
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,817,421
Number of Sequences: 539616
Number of extensions: 5769039
Number of successful extensions: 14913
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 14897
Number of HSP's gapped (non-prelim): 16
length of query: 326
length of database: 191,569,459
effective HSP length: 118
effective length of query: 208
effective length of database: 127,894,771
effective search space: 26602112368
effective search space used: 26602112368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)