Query 043421
Match_columns 326
No_of_seqs 60 out of 62
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 07:59:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043421.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043421hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fs1_A SKP2 F-BOX, cyclin A/CD 98.7 5.5E-09 1.9E-13 72.6 3.0 45 4-50 7-52 (53)
2 2e31_A FBS1, F-box only protei 98.5 9.4E-08 3.2E-12 89.5 5.2 81 4-97 49-131 (297)
3 3l2o_B F-box only protein 4; s 98.4 1.7E-07 5.7E-12 89.2 3.8 51 4-56 3-54 (312)
4 1p22_A F-BOX/WD-repeat protein 98.3 3.8E-07 1.3E-11 81.3 4.3 51 4-56 9-64 (435)
5 3v7d_B Cell division control p 98.2 7.9E-07 2.7E-11 78.6 4.0 49 4-54 13-63 (464)
6 2ovr_B FBW7, F-BOX/WD repeat p 98.1 1.4E-06 4.9E-11 77.3 4.2 50 4-55 17-67 (445)
7 2ast_B S-phase kinase-associat 97.0 0.00021 7.2E-09 61.8 2.2 47 4-52 7-54 (336)
8 2p1m_B Transport inhibitor res 96.9 0.00065 2.2E-08 63.0 4.3 47 1-49 1-47 (594)
9 3ogk_B Coronatine-insensitive 94.9 0.012 4E-07 54.8 2.7 35 7-42 14-48 (592)
10 1twf_I B12.6, DNA-directed RNA 85.9 0.71 2.4E-05 37.8 4.1 99 206-315 4-109 (122)
11 3qt1_I DNA-directed RNA polyme 74.4 2.1 7E-05 36.0 3.1 99 204-312 22-125 (133)
12 2fiy_A Protein FDHE homolog; F 65.1 3.2 0.00011 39.0 2.6 33 270-314 221-260 (309)
13 4i1l_A Scurfin, forkhead box p 54.7 3.1 0.0001 33.9 0.4 10 228-237 14-23 (93)
14 3h0g_I DNA-directed RNA polyme 41.2 19 0.00064 28.9 3.1 94 207-312 5-105 (113)
15 4hfx_A Transcription elongatio 40.5 8.3 0.00028 31.2 0.9 58 9-79 13-72 (97)
16 4ayb_P DNA-directed RNA polyme 24.4 24 0.00084 25.6 1.0 14 267-280 19-32 (48)
17 1vq8_Z 50S ribosomal protein L 21.7 23 0.00078 27.6 0.4 29 254-285 13-41 (83)
No 1
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.72 E-value=5.5e-09 Score=72.61 Aligned_cols=45 Identities=24% Similarity=0.475 Sum_probs=38.4
Q ss_pred cccccccHHHHHHHHHhcCCChHHHHHHhhchHhHHHHHHH-HhhhHH
Q 043421 4 TLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRN-ICWKTK 50 (326)
Q Consensus 4 ~~~~~LsEDVLllIF~rLn~dPr~LaraACVCRkfr~lar~-vLWRe~ 50 (326)
..+..||+|||..||++|. |++++++++|||+|+.++.. .+||.+
T Consensus 7 ~~~~~LP~eil~~I~~~L~--~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 7 VSWDSLPDELLLGIFSCLC--LPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp --CCSSCHHHHHHHHTTSC--GGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CCHHHCCHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 4578999999999999996 99999999999999999998 899863
No 2
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.48 E-value=9.4e-08 Score=89.47 Aligned_cols=81 Identities=21% Similarity=0.424 Sum_probs=60.6
Q ss_pred cccccccHHHHHHHHHhcCCChHHHH-HHhhchHhHHHHHHH-HhhhHHHhhhhhHHHHhhcCCCCCCCCCchhhhhhhh
Q 043421 4 TLFSKLSDDVVLNIFFKLEDDPRNWA-RLACVCVKFSSLVRN-ICWKTKCSKSIPAVVADLISPNSGVPPGGWSSLHKLS 81 (326)
Q Consensus 4 ~~~~~LsEDVLllIF~rLn~dPr~La-raACVCRkfr~lar~-vLWRe~C~~raP~Mv~dL~~~~s~~~~GsW~AL~KL~ 81 (326)
.....||||||.+||.+|. |++|+ +++||||+|++|+.. .+||..|... +..... .......+|+.+....
T Consensus 49 ~~~~~LP~ell~~Il~~Lp--~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~--g~~~~~---~~~~~~~~Wk~~y~~~ 121 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELP--ATELVQACRLVCLRWKELVDGAPLWLLKCQQE--GLVPEG---SADEERDHWQQFYFLS 121 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSC--HHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT--TCCCC--------CCSCHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCC--HHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc--Cccccc---ccCCCCCChhhhhehe
Confidence 4578999999999999995 99999 999999999999998 9999999887 111111 1122567799998664
Q ss_pred cccCCccccCcccccc
Q 043421 82 VCCPGLLHAGVLLENS 97 (326)
Q Consensus 82 vcCpG~~~agvl~e~~ 97 (326)
.++..||.|.
T Consensus 122 ------~~gRNLL~NP 131 (297)
T 2e31_A 122 ------KRRRNLLRNP 131 (297)
T ss_dssp ------HHCCCCSSCS
T ss_pred ------ecccceeecC
Confidence 3444555554
No 3
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.37 E-value=1.7e-07 Score=89.21 Aligned_cols=51 Identities=25% Similarity=0.449 Sum_probs=47.1
Q ss_pred cccccccHHHHHHHHHhcCCChHHHHHHhhchHhHHHHHHH-HhhhHHHhhhhh
Q 043421 4 TLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRN-ICWKTKCSKSIP 56 (326)
Q Consensus 4 ~~~~~LsEDVLllIF~rLn~dPr~LaraACVCRkfr~lar~-vLWRe~C~~raP 56 (326)
..+..||+||++.||+.|+ |++||++++|||+|+.++.. .|||.+|.+-+|
T Consensus 3 ~~l~~LP~ei~l~IlsfL~--p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~ 54 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLS--PHDLCQLGSTNHYWNETVRDPILWRYFLLRDLP 54 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSC--HHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGG
T ss_pred chhHhCCHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhccchHHHHHHhccCC
Confidence 3477899999999999997 99999999999999999999 999999997644
No 4
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.30 E-value=3.8e-07 Score=81.29 Aligned_cols=51 Identities=16% Similarity=0.387 Sum_probs=47.0
Q ss_pred cccccccHH----HHHHHHHhcCCChHHHHHHhhchHhHHHHHHH-HhhhHHHhhhhh
Q 043421 4 TLFSKLSDD----VVLNIFFKLEDDPRNWARLACVCVKFSSLVRN-ICWKTKCSKSIP 56 (326)
Q Consensus 4 ~~~~~LsED----VLllIF~rLn~dPr~LaraACVCRkfr~lar~-vLWRe~C~~raP 56 (326)
.+++.||+| |++.||+.|. |++|+++++|||+|+.++.. .+||.+|.+.++
T Consensus 9 d~~~~lp~e~~~~~~~~i~~~l~--~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~ 64 (435)
T 1p22_A 9 DFITALPARGLDHIAENILSYLD--AKSLCAAELVCKEWYRVTSDGMLWKKLIERMVR 64 (435)
T ss_dssp CHHHHTGGGTCHHHHHHHHTTCC--HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred ChHHHCCcchHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcC
Confidence 457889999 9999999995 99999999999999999999 999999998764
No 5
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.19 E-value=7.9e-07 Score=78.63 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=44.3
Q ss_pred cccccccHHHHHHHHHhcCCChHHHHHHhhchHhHHHHHHH--HhhhHHHhhh
Q 043421 4 TLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRN--ICWKTKCSKS 54 (326)
Q Consensus 4 ~~~~~LsEDVLllIF~rLn~dPr~LaraACVCRkfr~lar~--vLWRe~C~~r 54 (326)
.++..||+|||+.||+.| ||++|+++++|||+|+.++.. .+||.+|.+.
T Consensus 13 d~~~~lp~~~~~~i~~~l--~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~ 63 (464)
T 3v7d_B 13 DLITSLPFEISLKIFNYL--QFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE 63 (464)
T ss_dssp CHHHHSCHHHHHHHHTTS--CHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHT
T ss_pred CChHHCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcc
Confidence 457889999999999999 599999999999999999985 9999999643
No 6
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.13 E-value=1.4e-06 Score=77.30 Aligned_cols=50 Identities=24% Similarity=0.522 Sum_probs=45.7
Q ss_pred cccccccHHHHHHHHHhcCCChHHHHHHhhchHhHHHHHHH-HhhhHHHhhhh
Q 043421 4 TLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRN-ICWKTKCSKSI 55 (326)
Q Consensus 4 ~~~~~LsEDVLllIF~rLn~dPr~LaraACVCRkfr~lar~-vLWRe~C~~ra 55 (326)
.++..||+|++..||+.|. |++|+++++|||+|+.++.. .+||.+|.+..
T Consensus 17 d~~~~lp~e~~~~i~~~l~--~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~ 67 (445)
T 2ovr_B 17 DFISLLPKELALYVLSFLE--PKDLLQAAQTCRYWRILAEDNLLWREKCKEEG 67 (445)
T ss_dssp STTTSSCHHHHHHHHTTSC--HHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTT
T ss_pred ChhHHCCHHHHHHHHHhCC--HHHHHHHHHHhHHHHhhcCchhHhhhheeecc
Confidence 4578999999999999995 99999999999999999988 89999997653
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.03 E-value=0.00021 Score=61.78 Aligned_cols=47 Identities=23% Similarity=0.417 Sum_probs=40.5
Q ss_pred cccccccHHHHHHHHHhcCCChHHHHHHhhchHhHHHHHHH-HhhhHHHh
Q 043421 4 TLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRN-ICWKTKCS 52 (326)
Q Consensus 4 ~~~~~LsEDVLllIF~rLn~dPr~LaraACVCRkfr~lar~-vLWRe~C~ 52 (326)
..+..||+|||..||++|. ++++.+++.|||+|+.++.. .+|+..-+
T Consensus 7 ~~~~~LP~eil~~If~~L~--~~d~~~~~~vc~~W~~~~~~~~~~~~l~l 54 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLC--LPELLKVSGVCKRWYRLASDESLWQTLDL 54 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSC--HHHHHHTTSSCHHHHHHHTCSTTSSEEEC
T ss_pred CChhhCCHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHhcCchhheeecc
Confidence 3478999999999999996 89999999999999999875 67876433
No 8
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.90 E-value=0.00065 Score=63.04 Aligned_cols=47 Identities=13% Similarity=0.374 Sum_probs=32.8
Q ss_pred CcccccccccHHHHHHHHHhcCCChHHHHHHhhchHhHHHHHHHHhhhH
Q 043421 1 MAETLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKT 49 (326)
Q Consensus 1 ~~~~~~~~LsEDVLllIF~rLn~dPr~LaraACVCRkfr~lar~vLWRe 49 (326)
|.+..++.||||||..||++|. +++++.+++.|||+|+.+ ....|+.
T Consensus 1 ~~~d~~~~LPdevL~~If~~L~-~~~d~~~~s~vck~W~~~-~~~~~~~ 47 (594)
T 2p1m_B 1 MQKRIALSFPEEVLEHVFSFIQ-LDKDRNSVSLVCKSWYEI-ERWCRRK 47 (594)
T ss_dssp ---------CHHHHHHHHHTCC-CHHHHHHHHTSCHHHHHH-HHHHCCE
T ss_pred CcccchhhCCHHHHHHHHhhcC-CchhHHHHHHHHHHHHHh-hhhhceE
Confidence 5667789999999999999995 589999999999999998 3455553
No 9
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=94.90 E-value=0.012 Score=54.81 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=31.8
Q ss_pred ccccHHHHHHHHHhcCCChHHHHHHhhchHhHHHHH
Q 043421 7 SKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLV 42 (326)
Q Consensus 7 ~~LsEDVLllIF~rLn~dPr~LaraACVCRkfr~la 42 (326)
..||||||..||++|. +++++.+++.|||+|+.+.
T Consensus 14 ~~LPdeil~~I~~~L~-~~~d~~~~s~vck~W~~~~ 48 (592)
T 3ogk_B 14 VATVDDVIEQVMTYIT-DPKDRDSASLVCRRWFKID 48 (592)
T ss_dssp CCCGGGTHHHHHTTCC-CHHHHHHHTTSCHHHHHHH
T ss_pred CCCCHHHHHHHHHhcC-CHHHHHHHHHHhHHHHHhh
Confidence 3699999999999994 4999999999999999884
No 10
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=85.90 E-value=0.71 Score=37.76 Aligned_cols=99 Identities=23% Similarity=0.454 Sum_probs=62.8
Q ss_pred ceeehhcccccccccc--CCceEEeeCCCCcccccccccceeeeeccccchhhhhHHHH----hcCCCCCCccccCCCCc
Q 043421 206 WNLCREQGNKLLASRF--RGDCLYICDWPGCLHTEEKRNYMLFRGIFKNFKRSRVWRTI----NDGNRSKIDVNCAFCNC 279 (326)
Q Consensus 206 w~~SReqG~klLa~rf--R~D~LYvcDwPgC~H~ee~r~y~lFRGVFk~F~rSrvrr~l----~d~~r~~~~~~C~fC~~ 279 (326)
..|.-+-||-|..+.= .....|.|. -|-|.++..+-.+||=.+.. +...+...+ .|.+..+++..||-|+-
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~--~C~y~~~~~~~~v~~~~~~~-~~~e~~~v~~~~~~~~t~p~t~~~Cp~C~~ 80 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECR--TCSYVEEAGSPLVYRHELIT-NIGETAGVVQDIGSDPTLPRSDRECPKCHS 80 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECS--SSSCEEECSCSEEEEEESSC-CTTSSTTCCTTGGGCTTSCCCCCCCTTTCC
T ss_pred CCcccccCccCcccccCcCCCCEEECC--cCCCeeecCccEEEEEeecc-cccccccccccccccccccccCCCCCCCCC
Confidence 4899999999998764 346899998 99998765555566654332 111111111 23344556799999999
Q ss_pred cccchhhhhhhhhhhhcccCCCCceEEEEEeec-Cce
Q 043421 280 KETWDLHSAFCLRRVFGYHDDGEPVVRAYVCEN-GHV 315 (326)
Q Consensus 280 ~~~Wdl~sAfclrr~~gyhddGEpvvrayVCeN-GHv 315 (326)
+++.=+..- +|+ .| ||...+|+|.| ||.
T Consensus 81 ~~a~~~q~q--~rs-----ad-e~~t~fy~C~~C~~~ 109 (122)
T 1twf_I 81 RENVFFQSQ--QRR-----KD-TSMVLFFVCLSCSHI 109 (122)
T ss_dssp CCEEEEECS--SCC-----TT-CCCCEEEEETTTCCE
T ss_pred CEEEEEEec--Ccc-----CC-CCceEEEEeCCCCCE
Confidence 865432211 111 23 78999999998 664
No 11
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=74.42 E-value=2.1 Score=35.99 Aligned_cols=99 Identities=22% Similarity=0.410 Sum_probs=34.8
Q ss_pred ccceeehhccccccccccC--CceEEeeCCCCcccccccccceeeeeccccchhhhh--HHH-HhcCCCCCCccccCCCC
Q 043421 204 GVWNLCREQGNKLLASRFR--GDCLYICDWPGCLHTEEKRNYMLFRGIFKNFKRSRV--WRT-INDGNRSKIDVNCAFCN 278 (326)
Q Consensus 204 gsw~~SReqG~klLa~rfR--~D~LYvcDwPgC~H~ee~r~y~lFRGVFk~F~rSrv--rr~-l~d~~r~~~~~~C~fC~ 278 (326)
..-+|.-+-||-|+++.=+ +-.+|+|- -|-+.++-.+-.++|-.++.=...+. -.- +.|-.-..+++.||-|+
T Consensus 22 ~~~~FCPeCgNmL~pked~~~~~l~~~Cr--tCgY~~~~~~~~v~r~~~~~~~~e~~~vv~dv~~dptlp~t~~~CpkCg 99 (133)
T 3qt1_I 22 TTFRFCRDCNNMLYPREDKENNRLLFECR--TCSYVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDRECPKCH 99 (133)
T ss_dssp CCCCBCTTTCCBCBCCBCTTTCCBCCBCS--SSCCBCCCSCSEEEECCC-------------------------------
T ss_pred cCCeeCCCCCCEeeECccCCCceeEEECC--CCCCcEEcCCceEEEEEeeccccccceeEeeccccccCCcccCCCCCCC
Confidence 3459999999999998643 45689998 99999876666777765543111111 111 12223344578999999
Q ss_pred ccccchhhhhhhhhhhhcccCCCCceEEEEEeec
Q 043421 279 CKETWDLHSAFCLRRVFGYHDDGEPVVRAYVCEN 312 (326)
Q Consensus 279 ~~~~Wdl~sAfclrr~~gyhddGEpvvrayVCeN 312 (326)
-+++.=+..- . |. .| ||...+|+|.|
T Consensus 100 ~~~a~f~q~Q--~-Rs----aD-E~mT~fy~C~~ 125 (133)
T 3qt1_I 100 SRENVFFQLQ--I-RS----AD-EPMTTFYKCVN 125 (133)
T ss_dssp ----------------------------------
T ss_pred CceEEEEEEe--e-ec----CC-CCCcEEEEcCC
Confidence 8765322110 1 11 24 78999999976
No 12
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=65.10 E-value=3.2 Score=38.99 Aligned_cols=33 Identities=21% Similarity=0.630 Sum_probs=22.0
Q ss_pred CccccCCCCccccchhhhhhhhhhhhccc--CC-----CCceEEEEEeecCc
Q 043421 270 IDVNCAFCNCKETWDLHSAFCLRRVFGYH--DD-----GEPVVRAYVCENGH 314 (326)
Q Consensus 270 ~~~~C~fC~~~~~Wdl~sAfclrr~~gyh--dd-----GEpvvrayVCeNGH 314 (326)
+.+.|+||+.. +...|+ |+ +++-+|++||++=|
T Consensus 221 ~R~~C~~Cg~~------------~~l~y~~~e~~~~~~~~~~~r~e~C~~C~ 260 (309)
T 2fiy_A 221 VRIKCSHCEES------------KHLAYLSLEHDGQPAEKAVLRAETCPSCQ 260 (309)
T ss_dssp CTTSCSSSCCC------------SCCEEECCCC-CCCSTTCSEEEEEETTTT
T ss_pred cCcCCcCCCCC------------CCeeEEEecCccccCCCcceEEEEccccc
Confidence 34567777774 234555 44 56889999998744
No 13
>4i1l_A Scurfin, forkhead box protein P3; FOXP3, dimerization, complex ensemble, stability, regulatory activity, acetyation, DNA-binding, metal-binding; 2.10A {Mus musculus}
Probab=54.68 E-value=3.1 Score=33.89 Aligned_cols=10 Identities=50% Similarity=1.757 Sum_probs=5.0
Q ss_pred eeCCCCcccc
Q 043421 228 ICDWPGCLHT 237 (326)
Q Consensus 228 vcDwPgC~H~ 237 (326)
+|.||||+=.
T Consensus 14 ~CkWPGCe~~ 23 (93)
T 4i1l_A 14 VCKWPGCEKV 23 (93)
T ss_dssp ----CCSTTT
T ss_pred cccCCCCCCc
Confidence 7999999864
No 14
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=41.18 E-value=19 Score=28.92 Aligned_cols=94 Identities=19% Similarity=0.264 Sum_probs=56.3
Q ss_pred eeehhccccccccccCC--ceEEeeCCCCcccccccccceeeeeccccchh-hhhHHHHh----cCCCCCCccccCCCCc
Q 043421 207 NLCREQGNKLLASRFRG--DCLYICDWPGCLHTEEKRNYMLFRGIFKNFKR-SRVWRTIN----DGNRSKIDVNCAFCNC 279 (326)
Q Consensus 207 ~~SReqG~klLa~rfR~--D~LYvcDwPgC~H~ee~r~y~lFRGVFk~F~r-Srvrr~l~----d~~r~~~~~~C~fC~~ 279 (326)
+|.-+-||-|..+.=++ -..|+|- -|-+.++-.+-.+||=+.+ .+ ..+-..+. |-+-.+++..||-|+-
T Consensus 5 ~FCp~Cgn~L~~~~~~~~~~~~~~C~--~C~y~~~~~~~~v~~~~~~--~~~~e~~~v~~~~~~~~tlp~~~~~Cp~C~~ 80 (113)
T 3h0g_I 5 QYCIECNNMLYPREDKVDRVLRLACR--NCDYSEIAATSKVYRHELQ--SSNVENTTVSHDASTDPTLPRSDKECPRCHQ 80 (113)
T ss_dssp CCCSSSCCCCEECCCTTTCCCCEECS--SSCCEECCSCSEEEECCCC--SCSCTTCTTCTTSTTCSSSCBCCSCCSSSCC
T ss_pred eeCcCCCCEeeEcccCCCCeeEEECC--CCCCeEEcCCCeEEEEEEe--cccccccceeccccccccCCCcccCCCCCCC
Confidence 67788899988876532 4579999 9998875555455653221 11 11111222 2233455689999999
Q ss_pred cccchhhhhhhhhhhhcccCCCCceEEEEEeec
Q 043421 280 KETWDLHSAFCLRRVFGYHDDGEPVVRAYVCEN 312 (326)
Q Consensus 280 ~~~Wdl~sAfclrr~~gyhddGEpvvrayVCeN 312 (326)
+++.=+..- + | . .| ||...+|+|.|
T Consensus 81 ~~a~~~q~q--~-r---s-ad-e~mt~fy~C~~ 105 (113)
T 3h0g_I 81 HEAVFYQTH--S-R---R-GD-TMMTLIYVCVH 105 (113)
T ss_dssp SCEEEECCC--C-S---S-CC-CCCCCEEEESS
T ss_pred ceEEEEEEe--c-c---c-CC-CCCeeEEEcCC
Confidence 865322210 0 1 1 23 78999999976
No 15
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=40.47 E-value=8.3 Score=31.21 Aligned_cols=58 Identities=14% Similarity=0.258 Sum_probs=32.6
Q ss_pred ccHHHHHHHHHhcCCChHHHHHHhhchHhHHHHHHH--HhhhHHHhhhhhHHHHhhcCCCCCCCCCchhhhhh
Q 043421 9 LSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRN--ICWKTKCSKSIPAVVADLISPNSGVPPGGWSSLHK 79 (326)
Q Consensus 9 LsEDVLllIF~rLn~dPr~LaraACVCRkfr~lar~--vLWRe~C~~raP~Mv~dL~~~~s~~~~GsW~AL~K 79 (326)
.|=++|.-|+.+.+ |..|.++-=-|.. |+.. .||+.+|.+-||. .. -.-+-+|+.|.-
T Consensus 13 ~Py~lL~PVLek~t--p~QL~~IE~~nP~---L~~dTdeLWk~~c~rdF~~----~~----p~e~esWRelY~ 72 (97)
T 4hfx_A 13 VPYSVLEPVLERCT--PDQLYRIEEYNHV---LIEETDQLWKVHCHRDFKE----ER----PEEYESWREMYL 72 (97)
T ss_dssp -------CCGGGCC--HHHHHHHHTC---------CCHHHHHHHC----CC----SC----CCSSSCHHHHHH
T ss_pred CcHHHHHHHHccCC--HHHHHHHHHhCcc---cchhhHHHHHHHHHhHCcc----cC----CCCCCCHHHHHH
Confidence 46678888999975 9999999888874 4444 8999999999994 11 255679998863
No 16
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=24.38 E-value=24 Score=25.64 Aligned_cols=14 Identities=29% Similarity=0.769 Sum_probs=11.4
Q ss_pred CCCCccccCCCCcc
Q 043421 267 RSKIDVNCAFCNCK 280 (326)
Q Consensus 267 r~~~~~~C~fC~~~ 280 (326)
..-+.+.|||||-+
T Consensus 19 ~~lP~IrCpyCGyr 32 (48)
T 4ayb_P 19 KVLPGVRCPYCGYK 32 (48)
T ss_dssp CCCSSSCCTTTCCS
T ss_pred hhCCCcccCccCcE
Confidence 34588999999986
No 17
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=21.74 E-value=23 Score=27.64 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=18.5
Q ss_pred hhhhhHHHHhcCCCCCCccccCCCCccccchh
Q 043421 254 KRSRVWRTINDGNRSKIDVNCAFCNCKETWDL 285 (326)
Q Consensus 254 ~rSrvrr~l~d~~r~~~~~~C~fC~~~~~Wdl 285 (326)
-|.+|.++-+ ..+..-.||||+...+++.
T Consensus 13 lRk~vk~ie~---~q~~~y~Cp~CG~~~v~r~ 41 (83)
T 1vq8_Z 13 SRRRVAEIES---EMNEDHACPNCGEDRVDRQ 41 (83)
T ss_dssp HHHHHHHHHH---HHHSCEECSSSCCEEEEEE
T ss_pred HHHHHHHHHH---hccccCcCCCCCCcceecc
Confidence 3555555544 3445678999998766553
Done!