BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043422
(344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 289 bits (739), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 150/310 (48%), Positives = 203/310 (65%), Gaps = 3/310 (0%)
Query: 31 IGVNYGLNGDNLPPPEQVIDLYGRCQINFVRLFEPRHEVLEALRGRPQLLSLGTKNEEXX 90
IGV YG+ G+NLPPP +V+ LY I +RL++P L+ALR + L +
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 91 XXXXXXXXXDEWVKTHVVPFVDNVNIGYITVGNEVIPGTN-AQYVGQAINNILNSLNNYG 149
+W++ +VV + +V+ YI VGNE+IPG++ AQY+ A+ NI N+L++ G
Sbjct: 61 SLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPGSDLAQYILPAMRNIYNALSSAG 120
Query: 150 ITKQIKVTTVLPGTSLASSYPPSAGAFTNEAAAVLKDIAQNLWHRGFPIMINVYPYFAYA 209
+ QIKV+T + L +SYPPSAGAF++ A A L I Q L G P+++NVYPYF+Y
Sbjct: 121 LQNQIKVSTAVDTGVLGTSYPPSAGAFSSAAQAYLSPIVQFLASNGAPLLVNVYPYFSYT 180
Query: 210 SDPSHISLDYALFQSKDPVVRDGPYLYYNLFDAMVDAFHSALEKIDVPNVTLAISESGWP 269
+P ISL YALF + VV+DG + Y NLFDA+VDA +ALE++ NV + +SESGWP
Sbjct: 181 GNPGQISLPYALFTASGVVVQDGRFSYQNLFDAIVDAVFAALERVGGANVAVVVSESGWP 240
Query: 270 SAGNEPYTSIENAQKYNKNLMDHVLGGKGTPRRPGQTFDTFLFEMFNENQKPAGVEQNFG 329
SAG S NAQ YN+NL+ HV G GTPRRPG+ + ++FEMFNENQK G+EQNFG
Sbjct: 241 SAGGGAEASTSNAQTYNQNLIRHV--GGGTPRRPGKEIEAYIFEMFNENQKAGGIEQNFG 298
Query: 330 FFYPNMQPIY 339
FYPN QP+Y
Sbjct: 299 LFYPNKQPVY 308
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 237 bits (604), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 135/309 (43%), Positives = 188/309 (60%), Gaps = 9/309 (2%)
Query: 31 IGVNYGLNGDNLPPPEQVIDLYGRCQINFVRLFEPRHEVLEALRGRPQLLSLGTKNEEXX 90
+GV YG+ G+NLPP +VI LY + I +R+++P VLEALRG L LG N +
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQ 61
Query: 91 XXXXXXXXXDEWVKTHVVPFVDNVNIGYITVGNEVIP---GTN--AQYVGQAINNILNSL 145
WV+ +V F +V YI VGNE+ P GT AQ+V A+ NI +++
Sbjct: 62 SLTNPSNA-KSWVQKNVRGFWSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAI 120
Query: 146 NNYGITKQIKVTTVLPGTSLASSYPPSAGAFTNEAAAVLKDIAQNLWHRGFPIMINVYPY 205
+ G+ QIKV+T + T + +SYPPSAGAF ++ + L I + L P++ N+YPY
Sbjct: 121 RSAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDVRSYLNPIIRFLSSIRSPLLANIYPY 180
Query: 206 FAYASDPSHISLDYALFQSKDPVVRDGPYLYYNLFDAMVDAFHSALEKIDVPNVTLAISE 265
F YA +P ISL YALF S VV DG Y NLFDA +DA +SALE+ ++ + +SE
Sbjct: 181 FTYAGNPRDISLPYALFTSPSVVVWDGQRGYKNLFDATLDALYSALERASGGSLEVVVSE 240
Query: 266 SGWPSAGNEPYTSIENAQKYNKNLMDHVLGGKGTPRRPGQTFDTFLFEMFNENQKPAGVE 325
SGWPSAG T +N + Y NL+ HV +GTP+RP + +T+LF MF+EN+K VE
Sbjct: 241 SGWPSAGAFAAT-FDNGRTYLSNLIQHV--KRGTPKRPKRAIETYLFAMFDENKKQPEVE 297
Query: 326 QNFGFFYPN 334
++FG F+PN
Sbjct: 298 KHFGLFFPN 306
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 234 bits (597), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 132/310 (42%), Positives = 183/310 (59%), Gaps = 7/310 (2%)
Query: 31 IGVNYGLNGDNLPPPEQVIDLYGRCQINFVRLFEPRHEVLEALRGRPQLLSLGTKNEEXX 90
IGV YG++ +NLP V+ ++ I +RL+ P L+A+ G + +G N+
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLS 60
Query: 91 XXXXXXXXXDEWVKTHVVPFVDNVNIGYITVGNEVIPGTNAQYVGQAINNILNSLNNYGI 150
WVK+++ + V+ Y+ VGNEV G V A+ N+ +L G+
Sbjct: 61 NLAASPAAAASWVKSNIQAY-PKVSFRYVCVGNEVAGGATRNLV-PAMKNVHGALVAAGL 118
Query: 151 TKQIKVTTVLPGTSLASSYPPSAGAFTNEAAAVLKDIAQNLWHRGFPIMINVYPYFAYAS 210
IKVTT + L PPSAG+FT EAAA + + Q L P+M N+YPY A+A
Sbjct: 119 -GHIKVTTSVSQAILGVFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIYPYLAWAY 177
Query: 211 DPSHISLDYALFQSKDPVVRDGPYLYYNLFDAMVDAFHSALEKIDVPNVTLAISESGWPS 270
+PS + + YALF + VVRDG Y Y NLFD VDAF++A+ K +V L +SESGWPS
Sbjct: 178 NPSAMDMGYALFNASGTVVRDGAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVVSESGWPS 237
Query: 271 AGNEPYTSIENAQKYNKNLMDHVLGGKGTPRRPGQTFDTFLFEMFNENQKPAGVEQNFGF 330
G T NA+ YN++L++HV G+GTPR PG +T++F MFNENQK +GVEQN+G
Sbjct: 238 GGGTAATP-ANARFYNQHLINHV--GRGTPRHPG-AIETYIFAMFNENQKDSGVEQNWGL 293
Query: 331 FYPNMQPIYP 340
FYPNMQ +YP
Sbjct: 294 FYPNMQHVYP 303
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 208 bits (529), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 131/312 (41%), Positives = 177/312 (56%), Gaps = 13/312 (4%)
Query: 31 IGVNYGLNGDNLPPPEQVIDLYGRCQINFVRLFEPRHEVLEALRGRPQLLSLGTKNEEXX 90
IGV YG+ G+NLP V+ LY IN +R++ + L ALR L L N++
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLA 60
Query: 91 XXXXXXXXXDEWVKTHVVPFVDNVNIGYITVGNEVIPGTNAQYVGQAINNILNSLNNYGI 150
WV+ +V P+ VNI YI GNEV G Q + A+ N LN+ +
Sbjct: 61 NIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQGGA-TQSILPAMRN-LNAALSAAG 118
Query: 151 TKQIKVTTVLPGTSLASSYPPSAGAFTNEAAAVLKDIAQNLWHRGFPIMINVYPYFAYAS 210
IKV+T + +A+S+PPSAG F N A + D+A+ L G P++ NVYPYFAY
Sbjct: 119 LGAIKVSTSIRFDEVANSFPPSAGVFKN---AYMTDVARLLASTGAPLLANVYPYFAYRD 175
Query: 211 DPSHISLDYALFQSKDPVVRD--GPYLYYNLFDAMVDAFHSALEKIDVPNVTLAISESGW 268
+P ISL+YA FQ VRD Y +LFDAMVDA ++ALEK P V + +SESGW
Sbjct: 176 NPGSISLNYATFQ-PGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVSESGW 234
Query: 269 PSAGNEPYTSIENAQKYNKNLMDHVLGGKGTPRRPGQTFDTFLFEMFNENQKPA-GVEQN 327
PSAG S NA+ YN+ L++HV G GTP++ + +T++F MFNENQK E++
Sbjct: 235 PSAGGFA-ASAGNARTYNQGLINHV--GGGTPKKR-EALETYIFAMFNENQKTGDATERS 290
Query: 328 FGFFYPNMQPIY 339
FG F P+ P Y
Sbjct: 291 FGLFNPDKSPAY 302
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 202 bits (513), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 117/314 (37%), Positives = 175/314 (55%), Gaps = 11/314 (3%)
Query: 31 IGVNYGLNGDNLPPPEQVIDLYGRCQINFVRLFEPRHEVLEALRGRPQLLSLGTKNEEXX 90
IGV YG +NLP + VI LY I +R++ P V AL+G + L N++
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 91 XXXXXXXXXDEWVKTHVVPFVDNVNIGYITVGNEVIPGTN----AQYVGQAINNILNSLN 146
+ WV+ ++ +V YI VGNEV PG A++VG A+ NI N+L+
Sbjct: 63 ALANPSNA-NGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALS 121
Query: 147 NYGITKQIKVTTVLPGTSLASSYPPSAGAFTNEAAAVLKDIAQNLWHRGFPIMINVYPYF 206
+ G+ QIKV+T L ++YPP F E + + I L P++ N+YPYF
Sbjct: 122 SAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYF 181
Query: 207 AYASDPSHISLDYALFQSKDPVVRDGPYLYYNLFDAMVDAFHSALEKIDVPNVTLAISES 266
+ + + + L YALF + R Y NLFDA+VD+ + A EK+ N+ + +SES
Sbjct: 182 GHIDNTNAVPLSYALFNQQ----RRNDTGYQNLFDALVDSMYFATEKLGGQNIEIIVSES 237
Query: 267 GWPSAGNEPYTSIENAQKYNKNLMDHVLGGKGTPRRPGQTFDTFLFEMFNENQKPA-GVE 325
GWPS G P +++NA+ Y NL++HV G GTP++PG+T +T+LF MF+EN+K E
Sbjct: 238 GWPSEG-HPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEASE 296
Query: 326 QNFGFFYPNMQPIY 339
++FG F P+ +P Y
Sbjct: 297 KHFGLFNPDQRPKY 310
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/314 (36%), Positives = 174/314 (55%), Gaps = 11/314 (3%)
Query: 31 IGVNYGLNGDNLPPPEQVIDLYGRCQINFVRLFEPRHEVLEALRGRPQLLSLGTKNEEXX 90
IGV YG +NLP + VI LY I +R++ P V AL+G + L N++
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 91 XXXXXXXXXDEWVKTHVVPFVDNVNIGYITVGNEVIPGTN----AQYVGQAINNILNSLN 146
+ WV+ ++ +V YI VGNEV PG A++VG A+ NI N+L+
Sbjct: 63 ALANPSNA-NGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALS 121
Query: 147 NYGITKQIKVTTVLPGTSLASSYPPSAGAFTNEAAAVLKDIAQNLWHRGFPIMINVYPYF 206
+ G+ QIKV+T L ++YPP F E + + I L P++ N+YPYF
Sbjct: 122 SAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYF 181
Query: 207 AYASDPSHISLDYALFQSKDPVVRDGPYLYYNLFDAMVDAFHSALEKIDVPNVTLAISES 266
+ + + + L YALF + R Y NLFDA+VD+ + A EK+ N+ + +S S
Sbjct: 182 GHIDNTNAVPLSYALFNQQ----RRNDTGYQNLFDALVDSMYFATEKLGGQNIEIIVSAS 237
Query: 267 GWPSAGNEPYTSIENAQKYNKNLMDHVLGGKGTPRRPGQTFDTFLFEMFNENQKPA-GVE 325
GWPS G P +++NA+ Y NL++HV G GTP++PG+T +T+LF MF+EN+K E
Sbjct: 238 GWPSEG-HPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEASE 296
Query: 326 QNFGFFYPNMQPIY 339
++FG F P+ +P Y
Sbjct: 297 KHFGLFNPDQRPKY 310
>pdb|1V7Y|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli At Room Temperature
pdb|1V7Y|B Chain B, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli At Room Temperature
pdb|1WQ5|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli
pdb|1WQ5|B Chain B, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli
Length = 268
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 206 FAYASDPSHISLDYALFQSKDPVVRDGPYLYYNL-FDAMVDAFHSALEKIDVPNVTLA 262
FA P+ AL + K P + G +Y NL F+ +D F++ EK+ V +V +A
Sbjct: 72 FAAGVTPAQCFEMLALIRQKHPTIPIGLLMYANLVFNKGIDEFYAQCEKVGVDSVLVA 129
>pdb|1XC4|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Alpha-Subunits From Escherichia Coli
pdb|1XC4|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Alpha-Subunits From Escherichia Coli
Length = 268
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 206 FAYASDPSHISLDYALFQSKDPVVRDGPYLYYNL-FDAMVDAFHSALEKIDVPNVTLA 262
FA P+ AL + K P + G +Y NL F+ +D F++ EK+ V +V +A
Sbjct: 72 FAAGVTPAQCFEMLALIREKHPTIPIGLLMYANLVFNKGIDEFYARCEKVGVDSVLVA 129
>pdb|1XCF|A Chain A, Crystal Structure Of P28lY173F TRYPTOPHAN SYNTHASE ALPHA-
Subunits From Escherichia Coli
pdb|1XCF|B Chain B, Crystal Structure Of P28lY173F TRYPTOPHAN SYNTHASE ALPHA-
Subunits From Escherichia Coli
Length = 268
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 206 FAYASDPSHISLDYALFQSKDPVVRDGPYLYYNL-FDAMVDAFHSALEKIDVPNVTLA 262
FA P+ A+ + K P + G +Y NL F+ +D F++ EK+ V +V +A
Sbjct: 72 FAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNKGIDEFYARCEKVGVDSVLVA 129
>pdb|2IUB|A Chain A, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|B Chain B, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|C Chain C, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|D Chain D, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|E Chain E, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|F Chain F, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|G Chain G, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|H Chain H, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|I Chain I, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|J Chain J, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution
Length = 363
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 230 RDGPYLYYNLFDAMVDAFHSALEKID 255
+ YL Y+L DA+VD + LEKID
Sbjct: 176 KRADYLLYSLIDALVDDYFVLLEKID 201
>pdb|2BBJ|A Chain A, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|B Chain B, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|D Chain D, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|E Chain E, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|F Chain F, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2HN2|A Chain A, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|B Chain B, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|C Chain C, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|D Chain D, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|E Chain E, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
Length = 354
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 230 RDGPYLYYNLFDAMVDAFHSALEKID 255
+ YL Y+L DA+VD + LEKID
Sbjct: 167 KRADYLLYSLIDALVDDYFVLLEKID 192
>pdb|4EEB|A Chain A, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EEB|B Chain B, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EEB|C Chain C, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EEB|D Chain D, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EEB|E Chain E, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EED|A Chain A, Cora Coiled-Coil Mutant Under Mg2+ Presence
pdb|4EED|B Chain B, Cora Coiled-Coil Mutant Under Mg2+ Presence
pdb|4EED|C Chain C, Cora Coiled-Coil Mutant Under Mg2+ Presence
pdb|4EED|D Chain D, Cora Coiled-Coil Mutant Under Mg2+ Presence
pdb|4EED|E Chain E, Cora Coiled-Coil Mutant Under Mg2+ Presence
Length = 330
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 230 RDGPYLYYNLFDAMVDAFHSALEKID 255
+ YL Y+L DA+VD + LEKID
Sbjct: 143 KRADYLLYSLIDALVDDYFVLLEKID 168
>pdb|2BBH|A Chain A, X-Ray Structure Of T.Maritima Cora Soluble Domain
Length = 269
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 230 RDGPYLYYNLFDAMVDAFHSALEKID 255
+ YL Y+L DA+VD + LEKID
Sbjct: 167 KRADYLLYSLIDALVDDYFVLLEKID 192
>pdb|1RJD|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJD|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJD|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJG|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
Length = 334
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 192 WHRGFPIMINVYPYFAYASDPSHISLDYALFQSKDPVVRDGPYLYYNLFDAMVDAFHSAL 251
WHR + I + + A+ +D A+ +S PV+ G YL DA + F A
Sbjct: 44 WHRSYLITLKKFSRRAFGK------VDKAM-RSSFPVMNYGTYLRTVGIDAAILEFLVAN 96
Query: 252 EKIDVPNV 259
EK+ V N+
Sbjct: 97 EKVQVVNL 104
>pdb|2OB2|A Chain A, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
pdb|2OB2|B Chain B, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
pdb|2OB2|C Chain C, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
Length = 327
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 192 WHRGFPIMINVYPYFAYASDPSHISLDYALFQSKDPVVRDGPYLYYNLFDAMVDAFHSAL 251
WHR + I + + A+ +D A+ +S PV+ G YL DA + F A
Sbjct: 43 WHRSYLITLKKFSRRAFGK------VDKAM-RSSFPVMNYGTYLRTVGIDAAILEFLVAN 95
Query: 252 EKIDVPNV 259
EK+ V N+
Sbjct: 96 EKVQVVNL 103
>pdb|2OB1|A Chain A, Ppm1 With 1,8-Ans
pdb|2OB1|B Chain B, Ppm1 With 1,8-Ans
pdb|2OB1|C Chain C, Ppm1 With 1,8-Ans
Length = 319
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 192 WHRGFPIMINVYPYFAYASDPSHISLDYALFQSKDPVVRDGPYLYYNLFDAMVDAFHSAL 251
WHR + I + + A+ +D A+ +S PV+ G YL DA + F A
Sbjct: 35 WHRSYLITLKKFSRRAFGK------VDKAM-RSSFPVMNYGTYLRTVGIDAAILEFLVAN 87
Query: 252 EKIDVPNV 259
EK+ V N+
Sbjct: 88 EKVQVVNL 95
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Complexed With Substrate
Length = 493
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 20 IQLLAFT------GANVIGVNYGLNGDNLPPPEQVIDLYGRCQINFVRLFEPRHEVLEAL 73
+Q+LAFT G I + G++ D +P Q++ YGR + +++ L +
Sbjct: 419 LQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDL-LLQVAAQLEGALPWV 477
Query: 74 RGRPQLLSLGTK 85
RPQLL+ K
Sbjct: 478 ARRPQLLNPSRK 489
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Length = 493
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 20 IQLLAFT------GANVIGVNYGLNGDNLPPPEQVIDLYGRCQINFVRLFEPRHEVLEAL 73
+Q+LAFT G I + G++ D +P Q++ YGR + +++ L +
Sbjct: 419 LQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDL-LLQVAAQLEGALPWV 477
Query: 74 RGRPQLLSLGTK 85
RPQLL+ K
Sbjct: 478 ARRPQLLNPSRK 489
>pdb|2HN1|A Chain A, Crystal Structure Of A Cora Soluble Domain From A.
Fulgidus In Complex With Co2+
Length = 266
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 232 GPYLYYNLFDAMVDAFHSALEKI 254
G YL Y + DA+VD++ AL KI
Sbjct: 170 GDYLAYTILDAVVDSYFEALLKI 192
>pdb|1OOP|C Chain C, The Crystal Structure Of Swine Vesicular Disease Virus
Length = 238
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 10/100 (10%)
Query: 103 VKTHVVPFVDNVNIGYITVGNEVIPGTNAQYVGQAINNILNSLNNYGITKQIKVTTVLPG 162
++ + +P N G G + PG N+ + ILN ++ + IK+T + G
Sbjct: 65 IEAYQIPVQSNPTNGSQVFGFPLTPGANSVLNRTLLGEILNYYAHW--SGSIKLTFMFCG 122
Query: 163 TSLASSY------PPSAGAFTNEAAAVLKDIAQNLWHRGF 196
+++A+ PP AGA T A+L +W G
Sbjct: 123 SAMATGKFLLAYSPPGAGAPTTRKEAMLG--THVIWDVGL 160
>pdb|1COV|3 Chain 3, Coxsackievirus B3 Coat Protein
pdb|1JEW|3 Chain 3, Cryo-Em Structure Of Coxsackievirus B3(M Strain) With Its
Cellular Receptor, Coxsackievirus And Adenovirus
Receptor (Car)
Length = 238
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 103 VKTHVVPFVDNVNIGYITVGNEVIPGTNAQYVGQAINNILNSLNNYGITKQIKVTTVLPG 162
++ + +P N G G + PG ++ + + ILN ++ + IK+T + G
Sbjct: 65 MEAYQIPVRSNEGSGTQVFGFPLQPGYSSVFSRTLLGEILNYYTHW--SGSIKLTFMFCG 122
Query: 163 TSLASSY------PPSAGAFTNEAAAVL 184
+++A+ PP AGA T A+L
Sbjct: 123 SAMATGKFLLAYSPPGAGAPTKRVDAML 150
>pdb|2WMH|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae Tigr4
In Complex With The H-Disaccharide Blood Group Antigen
Length = 581
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 268 WPSAGNEPYTSIENAQKYNKNLMDHVLGGKGTPRRPGQTFDTFL 311
W + N+P T E +QKY+KNL VL K TP R D+ +
Sbjct: 187 WETIMNDP-TFFEASQKYHKNL---VLATKNTPIRDDAGTDSIV 226
>pdb|2WMG|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae Tigr4
( Sp4gh98) In Complex With The Lewisy Pentasaccharide
Blood Group Antigen
Length = 581
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 268 WPSAGNEPYTSIENAQKYNKNLMDHVLGGKGTPRRPGQTFDTFL 311
W + N+P T E +QKY+KNL VL K TP R D+ +
Sbjct: 187 WETIMNDP-TFFEASQKYHKNL---VLATKNTPIRDDAGTDSIV 226
>pdb|2WMF|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae Tigr4
( Sp4gh98) In Its Native Form
Length = 581
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 268 WPSAGNEPYTSIENAQKYNKNLMDHVLGGKGTPRRPGQTFDTFL 311
W + N+P T E +QKY+KNL VL K TP R D+ +
Sbjct: 187 WETIMNDP-TFFEASQKYHKNL---VLATKNTPIRDDAGTDSIV 226
>pdb|4GB3|3 Chain 3, Human Coxsackievirus B3 Strain Rd Coat Protein
Length = 238
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 103 VKTHVVPFVDNVNIGYITVGNEVIPGTNAQYVGQAINNILNSLNNYGITKQIKVTTVLPG 162
++ + +P N G G + PG ++ + + ILN ++ + IK+T + G
Sbjct: 65 MEAYQIPVRSNEGSGTQVFGFPLQPGYSSVFSRTLLGEILNYYTHW--SGSIKLTFMFCG 122
Query: 163 TSLASSY------PPSAGAFTNEAAAVL 184
+++A+ PP AGA T A+L
Sbjct: 123 SAMATGKFLLAYSPPGAGAPTKRVDAML 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,725,822
Number of Sequences: 62578
Number of extensions: 456787
Number of successful extensions: 994
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 957
Number of HSP's gapped (non-prelim): 26
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)