Query 043422
Match_columns 344
No_of_seqs 176 out of 1203
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 04:53:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043422.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043422hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 1.6E-88 3.5E-93 652.5 25.0 309 31-343 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 4E-47 8.7E-52 348.8 23.8 247 28-335 43-305 (305)
3 PF07745 Glyco_hydro_53: Glyco 99.1 8.2E-09 1.8E-13 100.6 18.2 243 45-342 26-330 (332)
4 PF03198 Glyco_hydro_72: Gluca 98.9 3.1E-08 6.7E-13 95.0 14.0 153 31-206 30-217 (314)
5 COG3867 Arabinogalactan endo-1 98.6 1.2E-06 2.7E-11 83.1 14.0 246 45-342 65-389 (403)
6 PRK10150 beta-D-glucuronidase; 98.2 0.00054 1.2E-08 72.2 24.7 235 49-340 319-584 (604)
7 PF00150 Cellulase: Cellulase 98.1 0.00055 1.2E-08 63.8 19.8 120 30-152 10-166 (281)
8 smart00633 Glyco_10 Glycosyl h 97.4 0.015 3.2E-07 54.7 18.2 77 250-341 174-251 (254)
9 PF11790 Glyco_hydro_cc: Glyco 97.2 0.02 4.4E-07 53.4 15.6 163 114-337 64-232 (239)
10 TIGR03356 BGL beta-galactosida 95.7 1.7 3.8E-05 44.1 20.3 43 46-88 57-118 (427)
11 PF02836 Glyco_hydro_2_C: Glyc 95.7 0.39 8.5E-06 45.9 14.9 96 30-125 17-132 (298)
12 PF00232 Glyco_hydro_1: Glycos 95.1 0.21 4.6E-06 51.0 11.3 277 46-339 61-441 (455)
13 PRK09936 hypothetical protein; 82.7 8.9 0.00019 37.1 9.1 59 30-88 21-96 (296)
14 PF02449 Glyco_hydro_42: Beta- 81.0 4.9 0.00011 39.8 7.1 83 45-127 12-140 (374)
15 cd02874 GH18_CFLE_spore_hydrol 79.6 19 0.00041 34.5 10.5 83 67-150 48-138 (313)
16 cd02875 GH18_chitobiase Chitob 78.9 17 0.00037 36.0 10.1 92 56-150 55-150 (358)
17 PF03662 Glyco_hydro_79n: Glyc 74.3 22 0.00048 34.9 9.2 174 69-274 114-301 (319)
18 smart00481 POLIIIAc DNA polyme 69.5 15 0.00031 26.8 5.4 44 43-86 15-63 (67)
19 PRK09525 lacZ beta-D-galactosi 69.0 43 0.00092 38.1 11.2 99 30-128 352-466 (1027)
20 PRK13511 6-phospho-beta-galact 63.3 12 0.00026 38.5 5.1 47 45-91 56-121 (469)
21 PRK10340 ebgA cryptic beta-D-g 62.9 53 0.0011 37.3 10.5 99 30-128 336-453 (1021)
22 COG4782 Uncharacterized protei 60.6 32 0.00069 34.4 7.2 57 236-295 125-186 (377)
23 PLN02814 beta-glucosidase 60.1 17 0.00036 37.9 5.5 73 256-336 385-461 (504)
24 PLN02998 beta-glucosidase 57.2 14 0.0003 38.5 4.3 73 256-336 390-466 (497)
25 PF02055 Glyco_hydro_30: O-Gly 56.0 1.5E+02 0.0033 30.8 11.7 58 101-158 208-278 (496)
26 PF00925 GTP_cyclohydro2: GTP 55.8 13 0.00028 32.8 3.4 38 48-85 131-168 (169)
27 PF01229 Glyco_hydro_39: Glyco 55.7 2.5E+02 0.0054 28.9 18.3 246 48-338 45-350 (486)
28 cd02872 GH18_chitolectin_chito 54.0 81 0.0017 30.8 9.0 78 71-149 62-151 (362)
29 cd00598 GH18_chitinase-like Th 53.6 45 0.00098 29.4 6.6 82 68-150 53-142 (210)
30 PLN02849 beta-glucosidase 52.3 18 0.00039 37.6 4.3 73 256-336 383-461 (503)
31 TIGR00505 ribA GTP cyclohydrol 52.1 22 0.00047 32.1 4.3 33 49-81 131-163 (191)
32 PRK00393 ribA GTP cyclohydrola 51.8 22 0.00047 32.3 4.2 33 49-81 134-166 (197)
33 PF04909 Amidohydro_2: Amidohy 50.9 38 0.00082 30.8 5.8 91 135-269 84-175 (273)
34 PF05990 DUF900: Alpha/beta hy 49.4 83 0.0018 29.1 7.9 40 252-294 43-87 (233)
35 PF02449 Glyco_hydro_42: Beta- 48.6 2.5E+02 0.0054 27.6 11.6 55 131-205 208-262 (374)
36 PF14488 DUF4434: Domain of un 47.0 1.1E+02 0.0024 26.9 7.9 20 68-87 69-88 (166)
37 PRK12485 bifunctional 3,4-dihy 43.6 28 0.0006 34.9 3.9 32 49-81 331-362 (369)
38 TIGR03632 bact_S11 30S ribosom 43.4 50 0.0011 27.0 4.8 37 46-82 50-91 (108)
39 cd02876 GH18_SI-CLP Stabilin-1 43.0 2.9E+02 0.0064 26.4 10.9 82 68-150 55-148 (318)
40 PRK09593 arb 6-phospho-beta-gl 42.3 48 0.001 34.3 5.5 47 45-91 75-141 (478)
41 cd04743 NPD_PKS 2-Nitropropane 41.9 1.8E+02 0.0039 28.6 9.2 57 29-86 56-112 (320)
42 cd00641 GTP_cyclohydro2 GTP cy 41.2 39 0.00084 30.4 4.2 33 49-81 133-165 (193)
43 PRK14019 bifunctional 3,4-dihy 40.9 32 0.0007 34.4 3.9 35 49-84 328-362 (367)
44 COG2159 Predicted metal-depend 39.5 1.9E+02 0.0041 27.8 8.9 95 136-273 113-209 (293)
45 TIGR03628 arch_S11P archaeal r 37.6 66 0.0014 26.8 4.6 36 46-81 53-101 (114)
46 KOG0626 Beta-glucosidase, lact 36.2 87 0.0019 32.8 6.2 73 254-333 403-485 (524)
47 PRK09318 bifunctional 3,4-dihy 35.4 50 0.0011 33.3 4.3 37 49-85 320-356 (387)
48 PRK08815 GTP cyclohydrolase; P 35.2 50 0.0011 33.1 4.2 37 49-85 305-341 (375)
49 PRK09314 bifunctional 3,4-dihy 35.2 48 0.001 32.8 4.0 34 48-81 300-334 (339)
50 PRK14052 effector protein; Pro 35.0 81 0.0018 31.0 5.4 30 77-106 216-252 (387)
51 TIGR01579 MiaB-like-C MiaB-lik 34.4 4.8E+02 0.01 26.0 12.5 137 42-208 166-330 (414)
52 cd06418 GH25_BacA-like BacA is 34.2 3.7E+02 0.008 24.6 11.5 107 43-151 21-143 (212)
53 PRK09311 bifunctional 3,4-dihy 34.2 54 0.0012 33.2 4.3 34 48-81 338-371 (402)
54 PRK09319 bifunctional 3,4-dihy 34.0 53 0.0012 34.6 4.3 37 49-85 343-379 (555)
55 PF13721 SecD-TM1: SecD export 33.8 1.7E+02 0.0037 23.6 6.4 35 29-63 32-66 (101)
56 COG4213 XylF ABC-type xylose t 33.6 86 0.0019 30.8 5.3 76 67-159 175-250 (341)
57 CHL00041 rps11 ribosomal prote 33.4 89 0.0019 25.9 4.8 35 47-81 64-103 (116)
58 PF00411 Ribosomal_S11: Riboso 33.3 72 0.0016 26.1 4.2 36 47-82 51-91 (110)
59 PF01055 Glyco_hydro_31: Glyco 33.1 1.8E+02 0.004 29.1 8.1 133 131-316 42-180 (441)
60 PLN02831 Bifunctional GTP cycl 33.1 56 0.0012 33.6 4.2 37 49-85 373-409 (450)
61 PRK15014 6-phospho-beta-glucos 33.0 58 0.0013 33.7 4.4 46 45-90 71-136 (477)
62 PLN00196 alpha-amylase; Provis 33.0 1E+02 0.0022 31.4 6.1 55 31-85 29-113 (428)
63 PRK09607 rps11p 30S ribosomal 32.9 85 0.0018 26.9 4.7 36 46-81 60-108 (132)
64 cd06545 GH18_3CO4_chitinase Th 32.9 1E+02 0.0022 28.6 5.7 81 68-150 50-133 (253)
65 PRK13347 coproporphyrinogen II 32.8 1.3E+02 0.0028 30.7 6.9 103 46-150 152-281 (453)
66 PF12249 AftA_C: Arabinofurano 32.5 77 0.0017 28.4 4.4 44 167-210 25-73 (178)
67 PRK09589 celA 6-phospho-beta-g 32.2 79 0.0017 32.7 5.3 46 45-90 69-134 (476)
68 COG1433 Uncharacterized conser 31.2 96 0.0021 26.1 4.7 40 46-85 55-94 (121)
69 PF14871 GHL6: Hypothetical gl 30.9 1E+02 0.0022 26.1 4.9 43 45-87 2-67 (132)
70 PRK09852 cryptic 6-phospho-bet 30.4 90 0.0019 32.3 5.3 46 46-91 74-139 (474)
71 KOG0078 GTP-binding protein SE 30.3 1.1E+02 0.0023 28.3 5.1 82 28-126 42-128 (207)
72 PRK15321 putative type III sec 29.8 1.4E+02 0.0029 24.4 5.0 46 244-303 39-84 (120)
73 COG0621 MiaB 2-methylthioadeni 29.3 6.4E+02 0.014 25.9 13.2 132 30-208 195-337 (437)
74 PRK05309 30S ribosomal protein 29.0 1.2E+02 0.0025 25.7 4.9 36 46-81 67-107 (128)
75 cd01543 PBP1_XylR Ligand-bindi 28.1 4.4E+02 0.0096 23.6 10.6 101 45-163 97-210 (265)
76 TIGR00640 acid_CoA_mut_C methy 27.6 1.8E+02 0.0039 24.5 5.9 45 43-87 40-96 (132)
77 COG1058 CinA Predicted nucleot 27.6 2E+02 0.0044 27.3 6.7 63 116-201 4-67 (255)
78 PF02811 PHP: PHP domain; Int 27.5 98 0.0021 26.0 4.3 44 43-86 16-64 (175)
79 TIGR01233 lacG 6-phospho-beta- 26.4 1.2E+02 0.0026 31.2 5.4 47 45-91 55-120 (467)
80 cd06156 eu_AANH_C_2 A group of 26.0 1.2E+02 0.0026 24.9 4.4 29 128-157 29-58 (118)
81 smart00636 Glyco_18 Glycosyl h 25.6 2.4E+02 0.0053 26.9 7.2 78 70-148 57-142 (334)
82 PF00704 Glyco_hydro_18: Glyco 25.3 2.5E+02 0.0054 26.6 7.1 117 74-207 70-196 (343)
83 PRK13586 1-(5-phosphoribosyl)- 24.4 2.9E+02 0.0062 25.6 7.1 69 43-127 30-107 (232)
84 PRK07198 hypothetical protein; 24.2 62 0.0013 32.8 2.7 37 49-85 338-375 (418)
85 PF00135 COesterase: Carboxyle 24.2 41 0.0009 34.0 1.5 19 95-113 188-206 (535)
86 TIGR01162 purE phosphoribosyla 23.7 1.1E+02 0.0023 27.0 3.8 47 40-86 9-62 (156)
87 cd02873 GH18_IDGF The IDGF's ( 23.2 7.4E+02 0.016 24.9 10.3 20 131-150 168-187 (413)
88 cd06598 GH31_transferase_CtsZ 22.7 6.9E+02 0.015 24.0 11.5 26 182-207 70-95 (317)
89 COG0807 RibA GTP cyclohydrolas 22.7 1.5E+02 0.0033 27.0 4.7 39 49-87 133-171 (193)
90 PF13377 Peripla_BP_3: Peripla 22.2 4.4E+02 0.0095 21.5 8.9 111 50-181 2-124 (160)
91 PF13547 GTA_TIM: GTA TIM-barr 22.0 1.4E+02 0.003 28.9 4.5 80 114-207 18-111 (299)
92 PF00977 His_biosynth: Histidi 21.7 1.5E+02 0.0032 27.3 4.6 69 43-127 29-107 (229)
93 TIGR03581 EF_0839 conserved hy 21.6 1.7E+02 0.0038 27.3 4.8 52 28-79 116-179 (236)
94 PF06117 DUF957: Enterobacteri 21.6 1.8E+02 0.0039 21.7 4.0 40 97-148 11-55 (65)
95 COG5016 Pyruvate/oxaloacetate 21.3 1.4E+02 0.003 30.5 4.4 40 45-84 96-145 (472)
96 PF07172 GRP: Glycine rich pro 21.2 86 0.0019 25.2 2.5 20 8-27 5-24 (95)
97 PRK13587 1-(5-phosphoribosyl)- 20.9 3.2E+02 0.007 25.2 6.7 69 43-127 31-110 (234)
98 PF12876 Cellulase-like: Sugar 20.9 2.2E+02 0.0048 21.8 4.8 45 113-159 8-63 (88)
99 PF13670 PepSY_2: Peptidase pr 20.7 1.5E+02 0.0034 22.4 3.8 23 42-65 28-50 (83)
100 PF00331 Glyco_hydro_10: Glyco 20.3 1.2E+02 0.0026 29.4 3.9 218 68-340 63-312 (320)
101 PRK09989 hypothetical protein; 20.3 2.1E+02 0.0047 26.3 5.4 51 31-82 4-58 (258)
102 PRK08944 motB flagellar motor 20.0 4.3E+02 0.0094 25.6 7.6 72 132-203 142-217 (302)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=1.6e-88 Score=652.52 Aligned_cols=309 Identities=49% Similarity=0.833 Sum_probs=254.8
Q ss_pred eeEeecCCCCCCCCHHHHHHHHhcCCCCEEEEccCChHHHHHHhcCCCeEEEeeCcchhhhhhhhHHHHHHHHHhccccc
Q 043422 31 IGVNYGLNGDNLPPPEQVIDLYGRCQINFVRLFEPRHEVLEALRGRPQLLSLGTKNEEIQSIASSQQASDEWVKTHVVPF 110 (344)
Q Consensus 31 ~GvnYg~~~~n~ps~~~v~~llk~~~~~~VRiY~~d~~vL~A~~~~gi~v~lGv~~~~~~~la~~~~~a~~wv~~~v~~~ 110 (344)
+|||||+.++|+|+|+++++++|+++|++||||++|+++|+|++++||+|++||+|++++++++++..|..|+++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEecccccCCCChHHHHHHHHHHHHHHHhcCCCCceEEeeeeccceecccCCCCCcccchhHHHHHHHHHHH
Q 043422 111 VDNVNIGYITVGNEVIPGTNAQYVGQAINNILNSLNNYGITKQIKVTTVLPGTSLASSYPPSAGAFTNEAAAVLKDIAQN 190 (344)
Q Consensus 111 ~~~~~I~~I~VGNEvl~~~~~~~Lv~am~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~PPs~g~F~~~~~~~~~~~l~f 190 (344)
+|.++|++|+||||++.+.....|+|+|+++|++|++.||+++|||+|+++++++..|||||+|.|++++.++|+++++|
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~l~f 160 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDNAYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPLLKF 160 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGGGGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHHHHH
T ss_pred CcccceeeeecccccccCccceeeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhHHHHH
Confidence 99999999999999997544348999999999999999999899999999999999999999999999999999999999
Q ss_pred HhhcCCceeeccCCcccccCCCCCcCcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHcCCCCccEEEeeccCCC
Q 043422 191 LWHRGFPIMINVYPYFAYASDPSHISLDYALFQSKDPVVRDGPYLYYNLFDAMVDAFHSALEKIDVPNVTLAISESGWPS 270 (344)
Q Consensus 191 L~~~~d~~~vNiyPyf~~~~~~~~i~l~~A~f~~~~~~~~~~~~~y~n~fda~~da~~~al~~~g~~~~~vvVtETGWPS 270 (344)
|.++++|||+|+||||.+.++|.+++|+||+|++.+... |++++|+|+||+|+|++++||+++|+++++|+||||||||
T Consensus 161 L~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~-D~~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ETGWPs 239 (310)
T PF00332_consen 161 LDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVV-DGGLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGETGWPS 239 (310)
T ss_dssp HHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SE-ETTEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE---S
T ss_pred hhccCCCceeccchhhhccCCcccCCccccccccccccc-ccchhhhHHHHHHHHHHHHHHHHhCCCCceeEEecccccc
Confidence 999999999999999999999999999999999866555 7789999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEEeecCCCCC-CCCcCceeeecCCCCeeecCCC
Q 043422 271 AGNEPYTSIENAQKYNKNLMDHVLGGKGTPRRPGQTFDTFLFEMFNENQKP-AGVEQNFGFFYPNMQPIYPFWP 343 (344)
Q Consensus 271 ~G~~~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F~~fDe~wK~-~~~E~~wGlf~~d~~~ky~l~~ 343 (344)
+|+ .+|+.+||+.|++|+++++. .|||+||+..+++||||||||+||+ +.+|||||||++||++||+|+|
T Consensus 240 ~G~-~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~f 310 (310)
T PF00332_consen 240 AGD-PGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLDF 310 (310)
T ss_dssp SSS-TTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS----
T ss_pred CCC-CCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCCC
Confidence 999 48999999999999999984 8999999989999999999999999 4599999999999999999987
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4e-47 Score=348.77 Aligned_cols=247 Identities=20% Similarity=0.285 Sum_probs=197.0
Q ss_pred CceeeEeecCCCCC--CCCHHHHHHHHhc-CCCC-EEEEccCC----hHHHHHHhcCCCeEEEeeCcchhhhhhhhHHHH
Q 043422 28 ANVIGVNYGLNGDN--LPPPEQVIDLYGR-CQIN-FVRLFEPR----HEVLEALRGRPQLLSLGTKNEEIQSIASSQQAS 99 (344)
Q Consensus 28 ~~~~GvnYg~~~~n--~ps~~~v~~llk~-~~~~-~VRiY~~d----~~vL~A~~~~gi~v~lGv~~~~~~~la~~~~~a 99 (344)
.+..||||+++.+| ||+.+|+..+|.. ..++ .||+|++| ++|++|++..|+||+||||..+..+-+.+.
T Consensus 43 ~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~~~~--- 119 (305)
T COG5309 43 SGFLAFTLGPYNDDGTCKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHDAVEK--- 119 (305)
T ss_pred ccccceeccccCCCCCCcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhhhHHH---
Confidence 45689999999887 8999999765533 2333 99999877 479999999999999999986544433221
Q ss_pred HHHHHhcccccCCCccEEEEEecccccC-CCC-hHHHHHHHHHHHHHHHhcCCCCceEEeeeeccceecccCCCCCcccc
Q 043422 100 DEWVKTHVVPFVDNVNIGYITVGNEVIP-GTN-AQYVGQAINNILNSLNNYGITKQIKVTTVLPGTSLASSYPPSAGAFT 177 (344)
Q Consensus 100 ~~wv~~~v~~~~~~~~I~~I~VGNEvl~-~~~-~~~Lv~am~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~PPs~g~F~ 177 (344)
-+...+.+++.++.|++|+||||+|+ ++. +++|+.+|..+|++|+.+|+++ ||+|+++|.++.+ .
T Consensus 120 --til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~g--pV~T~dsw~~~~~-n-------- 186 (305)
T COG5309 120 --TILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDG--PVTTVDSWNVVIN-N-------- 186 (305)
T ss_pred --HHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCC--ceeecccceeeeC-C--------
Confidence 23455778888899999999999999 555 8999999999999999999965 5999999999976 1
Q ss_pred hhHHHHHHHHHHHHhhcCCceeeccCCcccccCCCCCcCcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHcCCC
Q 043422 178 NEAAAVLKDIAQNLWHRGFPIMINVYPYFAYASDPSHISLDYALFQSKDPVVRDGPYLYYNLFDAMVDAFHSALEKIDVP 257 (344)
Q Consensus 178 ~~~~~~~~~~l~fL~~~~d~~~vNiyPyf~~~~~~~~i~l~~A~f~~~~~~~~~~~~~y~n~fda~~da~~~al~~~g~~ 257 (344)
|. |+++.|++|+|.||||+.+... ++.+ .++-.|++-++.++ | .
T Consensus 187 ----p~-------l~~~SDfia~N~~aYwd~~~~a-----------------~~~~----~f~~~q~e~vqsa~---g-~ 230 (305)
T COG5309 187 ----PE-------LCQASDFIAANAHAYWDGQTVA-----------------NAAG----TFLLEQLERVQSAC---G-T 230 (305)
T ss_pred ----hH-------Hhhhhhhhhcccchhccccchh-----------------hhhh----HHHHHHHHHHHHhc---C-C
Confidence 22 4567788999999999975322 1111 34545677666552 3 4
Q ss_pred CccEEEeeccCCCCCC---CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEEeecCCCCC-C--CCcCceeee
Q 043422 258 NVTLAISESGWPSAGN---EPYTSIENAQKYNKNLMDHVLGGKGTPRRPGQTFDTFLFEMFNENQKP-A--GVEQNFGFF 331 (344)
Q Consensus 258 ~~~vvVtETGWPS~G~---~~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F~~fDe~wK~-~--~~E~~wGlf 331 (344)
+|+++|+||||||+|. ++.||++||+.|+++++|.++ +. ++++|+||+|||+||. + ++|+|||++
T Consensus 231 ~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~-------~~--G~d~fvfeAFdd~WK~~~~y~VEkywGv~ 301 (305)
T COG5309 231 KKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALR-------SC--GYDVFVFEAFDDDWKADGSYGVEKYWGVL 301 (305)
T ss_pred CccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhh-------cc--CccEEEeeeccccccCccccchhhceeee
Confidence 5999999999999998 478999999999999999884 22 5899999999999998 2 699999999
Q ss_pred cCCC
Q 043422 332 YPNM 335 (344)
Q Consensus 332 ~~d~ 335 (344)
+.++
T Consensus 302 ~s~~ 305 (305)
T COG5309 302 SSDR 305 (305)
T ss_pred ccCC
Confidence 9875
No 3
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.07 E-value=8.2e-09 Score=100.59 Aligned_cols=243 Identities=15% Similarity=0.211 Sum_probs=121.9
Q ss_pred HHHHHHHHhcCCCCEEE--Ec-cC------C-h---HHHHHHhcCCCeEEEeeCcch---------hh------hhhhhH
Q 043422 45 PEQVIDLYGRCQINFVR--LF-EP------R-H---EVLEALRGRPQLLSLGTKNEE---------IQ------SIASSQ 96 (344)
Q Consensus 45 ~~~v~~llk~~~~~~VR--iY-~~------d-~---~vL~A~~~~gi~v~lGv~~~~---------~~------~la~~~ 96 (344)
..++.++||.+|++.|| ++ ++ | . ...+.+++.||+|+|..--+| ++ ++++-.
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 46789999999997655 55 21 2 2 344566679999999986432 00 111111
Q ss_pred HHHHHHHHhcccccC-CCccEEEEEecccccCC------C--ChHHHHHHHHHHHHHHHhcCCCCceEEeeeeccceecc
Q 043422 97 QASDEWVKTHVVPFV-DNVNIGYITVGNEVIPG------T--NAQYVGQAINNILNSLNNYGITKQIKVTTVLPGTSLAS 167 (344)
Q Consensus 97 ~~a~~wv~~~v~~~~-~~~~I~~I~VGNEvl~~------~--~~~~Lv~am~~v~~aL~~~gl~~~I~VsT~~~~~~l~~ 167 (344)
++..++.+.-+...- -+...+.|-||||.-.| . -.+.+...++...+++|+.+- ++||-.-.. +
T Consensus 106 ~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p--~~kV~lH~~-----~ 178 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP--NIKVMLHLA-----N 178 (332)
T ss_dssp HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS--TSEEEEEES------
T ss_pred HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEC-----C
Confidence 222233222222211 23568899999998752 1 256777788888888887554 344432111 1
Q ss_pred cCCCCCcccchhHHHHHHHHHHHHhh---cCCceeeccCCcccccCCCCCcCcccccccCCCccccCCCccchhHHHHHH
Q 043422 168 SYPPSAGAFTNEAAAVLKDIAQNLWH---RGFPIMINVYPYFAYASDPSHISLDYALFQSKDPVVRDGPYLYYNLFDAMV 244 (344)
Q Consensus 168 s~PPs~g~F~~~~~~~~~~~l~fL~~---~~d~~~vNiyPyf~~~~~~~~i~l~~A~f~~~~~~~~~~~~~y~n~fda~~ 244 (344)
|-.... .+-..+.|.. .-|+++++.||||... -+-+...+
T Consensus 179 --~~~~~~--------~~~~f~~l~~~g~d~DviGlSyYP~w~~~---------------------------l~~l~~~l 221 (332)
T PF07745_consen 179 --GGDNDL--------YRWFFDNLKAAGVDFDVIGLSYYPFWHGT---------------------------LEDLKNNL 221 (332)
T ss_dssp --TTSHHH--------HHHHHHHHHHTTGG-SEEEEEE-STTST----------------------------HHHHHHHH
T ss_pred --CCchHH--------HHHHHHHHHhcCCCcceEEEecCCCCcch---------------------------HHHHHHHH
Confidence 100001 1112222222 3499999999999841 01222333
Q ss_pred HHHHHHHHHcCCCCccEEEeeccCCCCCC-----C-----------CCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCccc
Q 043422 245 DAFHSALEKIDVPNVTLAISESGWPSAGN-----E-----------PYTSIENAQKYNKNLMDHVLGGKGTPRRPGQTFD 308 (344)
Q Consensus 245 da~~~al~~~g~~~~~vvVtETGWPS~G~-----~-----------~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~ 308 (344)
+.+ .++ | +|+|+|.|||||..-. . ..+|++.|+.|++++++.+.+. |. ++..-
T Consensus 222 ~~l---~~r--y-~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~---p~--~~g~G 290 (332)
T PF07745_consen 222 NDL---ASR--Y-GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNV---PN--GGGLG 290 (332)
T ss_dssp HHH---HHH--H-T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------TTEEE
T ss_pred HHH---HHH--h-CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHh---cc--CCeEE
Confidence 333 223 3 6899999999999821 1 1368999999999999998642 21 12456
Q ss_pred EEEEEee-cCCCCC--CCCcCce---eeecCCCCeeecCC
Q 043422 309 TFLFEMF-NENQKP--AGVEQNF---GFFYPNMQPIYPFW 342 (344)
Q Consensus 309 ~y~F~~f-De~wK~--~~~E~~w---Glf~~d~~~ky~l~ 342 (344)
+|+-|.- -..+.. .+....| +||+.+|++--.|+
T Consensus 291 vfYWeP~w~~~~~~~~~~~g~~w~n~~lFD~~g~~l~sl~ 330 (332)
T PF07745_consen 291 VFYWEPAWIPVENGWDWGGGSSWDNQALFDFNGNALPSLD 330 (332)
T ss_dssp EEEE-TT-GGGTTHHHHTTTSSSSBGSSB-TTSBB-GGGG
T ss_pred EEeeccccccCCcccccCCCCCccccccCCCCCCCchHhh
Confidence 7665532 111110 0122333 89999998765554
No 4
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.89 E-value=3.1e-08 Score=94.98 Aligned_cols=153 Identities=25% Similarity=0.307 Sum_probs=81.7
Q ss_pred eeEeecCCCC-------CC-CCHHH---HHHHHhcCCCCEEEEccCCh-----HHHHHHhcCCCeEEEeeCcchhhhhhh
Q 043422 31 IGVNYGLNGD-------NL-PPPEQ---VIDLYGRCQINFVRLFEPRH-----EVLEALRGRPQLLSLGTKNEEIQSIAS 94 (344)
Q Consensus 31 ~GvnYg~~~~-------n~-ps~~~---v~~llk~~~~~~VRiY~~d~-----~vL~A~~~~gi~v~lGv~~~~~~~la~ 94 (344)
.||.|-|-++ |. -.++. -+.+||..|+..||+|..|+ .-+.+|++.||-|++.+... ..++.+
T Consensus 30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p-~~sI~r 108 (314)
T PF03198_consen 30 KGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTP-NGSINR 108 (314)
T ss_dssp EEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BT-TBS--T
T ss_pred eeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCC-CccccC
Confidence 6999999776 21 12222 25688999999999998873 56899999999999999753 112221
Q ss_pred hHHHHHHH----------HHhcccccCCCccEEEEEecccccCC--C--ChHHHHHHHHHHHHHHHhcCCCCceEEeeee
Q 043422 95 SQQASDEW----------VKTHVVPFVDNVNIGYITVGNEVIPG--T--NAQYVGQAINNILNSLNNYGITKQIKVTTVL 160 (344)
Q Consensus 95 ~~~~a~~w----------v~~~v~~~~~~~~I~~I~VGNEvl~~--~--~~~~Lv~am~~v~~aL~~~gl~~~I~VsT~~ 160 (344)
... +..| +.++...| .++-+..+||||+.. + .++.+-.+++++|+-+++.++. +|||+-+-
T Consensus 109 ~~P-~~sw~~~l~~~~~~vid~fa~Y---~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R-~IPVGYsa 183 (314)
T PF03198_consen 109 SDP-APSWNTDLLDRYFAVIDAFAKY---DNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYR-SIPVGYSA 183 (314)
T ss_dssp TS-------HHHHHHHHHHHHHHTT----TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE
T ss_pred CCC-cCCCCHHHHHHHHHHHHHhccC---CceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCC-CCceeEEc
Confidence 111 1122 22334444 789999999999983 2 3788889999999999999985 58988553
Q ss_pred ccceecccCCCCCcccchhHHHHHHHHHHHHh-----hcCCceeeccCCcc
Q 043422 161 PGTSLASSYPPSAGAFTNEAAAVLKDIAQNLW-----HRGFPIMINVYPYF 206 (344)
Q Consensus 161 ~~~~l~~s~PPs~g~F~~~~~~~~~~~l~fL~-----~~~d~~~vNiyPyf 206 (344)
+ |+ ..+ ..++.++|. +..|++++|.|-+=
T Consensus 184 a-D~---------~~~-------r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WC 217 (314)
T PF03198_consen 184 A-DD---------AEI-------RQDLANYLNCGDDDERIDFFGLNSYEWC 217 (314)
T ss_dssp -------------TTT-------HHHHHHHTTBTT-----S-EEEEE----
T ss_pred c-CC---------hhH-------HHHHHHHhcCCCcccccceeeeccceec
Confidence 2 11 011 234455554 46699999998654
No 5
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.58 E-value=1.2e-06 Score=83.05 Aligned_cols=246 Identities=17% Similarity=0.264 Sum_probs=131.0
Q ss_pred HHHHHHHHhcCCCCEEE--Ec----cCC--------------hHHHHHHhcCCCeEEEeeCcchhhhhhhhHHHHHHHH-
Q 043422 45 PEQVIDLYGRCQINFVR--LF----EPR--------------HEVLEALRGRPQLLSLGTKNEEIQSIASSQQASDEWV- 103 (344)
Q Consensus 45 ~~~v~~llk~~~~~~VR--iY----~~d--------------~~vL~A~~~~gi~v~lGv~~~~~~~la~~~~~a~~wv- 103 (344)
.+++.+.||.+|+..|| +| +.| -++-+.+++.||||++-..-+|.=.=..-+..-.+|.
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~ 144 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWEN 144 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhhh
Confidence 46678899999997655 44 332 1344566679999999886543100000000111221
Q ss_pred ------Hhcc--------cccC-CCccEEEEEecccccC------CCC--hHHHHHHHHHHHHHHHhcCCCCceEEeeee
Q 043422 104 ------KTHV--------VPFV-DNVNIGYITVGNEVIP------GTN--AQYVGQAINNILNSLNNYGITKQIKVTTVL 160 (344)
Q Consensus 104 ------~~~v--------~~~~-~~~~I~~I~VGNEvl~------~~~--~~~Lv~am~~v~~aL~~~gl~~~I~VsT~~ 160 (344)
++.| .... -...+.-|-||||.-. |+. -..+..-++.--++++... ..|||---
T Consensus 145 l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~--p~ikv~lH- 221 (403)
T COG3867 145 LNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS--PTIKVALH- 221 (403)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC--CCceEEEE-
Confidence 1111 1110 1245778999999874 222 3444444555555555432 34665432
Q ss_pred ccceecccCCCCCcccchhHHHHHHHHHHHHhhcCCceeeccCCcccccCCCCCcCcccccccCCCccccCCCccchhHH
Q 043422 161 PGTSLASSYPPSAGAFTNEAAAVLKDIAQNLWHRGFPIMINVYPYFAYASDPSHISLDYALFQSKDPVVRDGPYLYYNLF 240 (344)
Q Consensus 161 ~~~~l~~s~PPs~g~F~~~~~~~~~~~l~fL~~~~d~~~vNiyPyf~~~~~~~~i~l~~A~f~~~~~~~~~~~~~y~n~f 240 (344)
+.+ |-..+.|+--...+-+.-++| |.|+.--||||.+.-+ |+
T Consensus 222 ----la~--g~~n~~y~~~fd~ltk~nvdf-----DVig~SyYpyWhgtl~--------------------------nL- 263 (403)
T COG3867 222 ----LAE--GENNSLYRWIFDELTKRNVDF-----DVIGSSYYPYWHGTLN--------------------------NL- 263 (403)
T ss_pred ----ecC--CCCCchhhHHHHHHHHcCCCc-----eEEeeeccccccCcHH--------------------------HH-
Confidence 222 222344432111222333333 7899999999985310 11
Q ss_pred HHHHHHHHHHHHHcCCCCccEEEeeccC--------------CCCCCC--CCCCHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 043422 241 DAMVDAFHSALEKIDVPNVTLAISESGW--------------PSAGNE--PYTSIENAQKYNKNLMDHVLGGKGTPRRPG 304 (344)
Q Consensus 241 da~~da~~~al~~~g~~~~~vvVtETGW--------------PS~G~~--~~as~~na~~y~~~li~~~~~~~Gtp~rpg 304 (344)
...++.+-. --+|.|+|.||+. |+.+.. .-.+++-|++|.+++|+.+.+ +|+..|
T Consensus 264 ~~nl~dia~------rY~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~n---vp~~~G 334 (403)
T COG3867 264 TTNLNDIAS------RYHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKN---VPKSNG 334 (403)
T ss_pred HhHHHHHHH------HhcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHh---CCCCCc
Confidence 111222211 1378999999998 555531 347788999999999999864 333332
Q ss_pred CcccEEEEE-------------------eecCCCCCCCCcCceeeecCCCCeeecCC
Q 043422 305 QTFDTFLFE-------------------MFNENQKPAGVEQNFGFFYPNMQPIYPFW 342 (344)
Q Consensus 305 ~~~~~y~F~-------------------~fDe~wK~~~~E~~wGlf~~d~~~ky~l~ 342 (344)
.-+|+.| .-.|+|+.+..--+=-||+-+|.|-.+|+
T Consensus 335 --lGvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdNqaLfdf~G~~LPSl~ 389 (403)
T COG3867 335 --LGVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDNQALFDFNGHPLPSLN 389 (403)
T ss_pred --eEEEEecccceeccCCCccccchhhccCcccccCCCccchhhhhhccCCcCcchh
Confidence 3444443 22355655222222257888887766654
No 6
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.20 E-value=0.00054 Score=72.18 Aligned_cols=235 Identities=13% Similarity=0.061 Sum_probs=128.6
Q ss_pred HHHHhcCCCCEEEEcc--CChHHHHHHhcCCCeEEEeeCcc---------------hhhhhh------hhHHHHHHHHHh
Q 043422 49 IDLYGRCQINFVRLFE--PRHEVLEALRGRPQLLSLGTKNE---------------EIQSIA------SSQQASDEWVKT 105 (344)
Q Consensus 49 ~~llk~~~~~~VRiY~--~d~~vL~A~~~~gi~v~lGv~~~---------------~~~~la------~~~~~a~~wv~~ 105 (344)
++++|..|++.||+-. .++..+.+|-..||-|+.=++.- +..... +..+...+-++.
T Consensus 319 ~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (604)
T PRK10150 319 HNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRE 398 (604)
T ss_pred HHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHHHHHHHHHHH
Confidence 5678999999999943 35789999999999887544321 000000 011112222344
Q ss_pred cccccCCCccEEEEEecccccCCCChHHHHHHHHHHHHHHHhcCCCCceEEeeeeccceecccCCCCCcccchhHHHHHH
Q 043422 106 HVVPFVDNVNIGYITVGNEVIPGTNAQYVGQAINNILNSLNNYGITKQIKVTTVLPGTSLASSYPPSAGAFTNEAAAVLK 185 (344)
Q Consensus 106 ~v~~~~~~~~I~~I~VGNEvl~~~~~~~Lv~am~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~PPs~g~F~~~~~~~~~ 185 (344)
.|..+...-.|..=++|||.-.+. ...-..++.+.+.+++..- .=+|+.+..+. . +|....
T Consensus 399 mv~r~~NHPSIi~Ws~gNE~~~~~--~~~~~~~~~l~~~~k~~Dp--tR~vt~~~~~~---~--~~~~~~---------- 459 (604)
T PRK10150 399 LIARDKNHPSVVMWSIANEPASRE--QGAREYFAPLAELTRKLDP--TRPVTCVNVMF---A--TPDTDT---------- 459 (604)
T ss_pred HHHhccCCceEEEEeeccCCCccc--hhHHHHHHHHHHHHHhhCC--CCceEEEeccc---C--Cccccc----------
Confidence 455543334588999999975321 1222333444444444332 22355543110 0 111000
Q ss_pred HHHHHHhhcCCceeeccCCcccccCCCCCcCcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHcCCCCccEEEee
Q 043422 186 DIAQNLWHRGFPIMINVYPYFAYASDPSHISLDYALFQSKDPVVRDGPYLYYNLFDAMVDAFHSALEKIDVPNVTLAISE 265 (344)
Q Consensus 186 ~~l~fL~~~~d~~~vNiyPyf~~~~~~~~i~l~~A~f~~~~~~~~~~~~~y~n~fda~~da~~~al~~~g~~~~~vvVtE 265 (344)
+....|+++.|.|+=|-.. .... + .....++..++.. .+. + +||++++|
T Consensus 460 -----~~~~~Dv~~~N~Y~~wy~~--~~~~----~--------------~~~~~~~~~~~~~----~~~-~-~kP~~isE 508 (604)
T PRK10150 460 -----VSDLVDVLCLNRYYGWYVD--SGDL----E--------------TAEKVLEKELLAW----QEK-L-HKPIIITE 508 (604)
T ss_pred -----ccCcccEEEEcccceecCC--CCCH----H--------------HHHHHHHHHHHHH----HHh-c-CCCEEEEc
Confidence 1234578899987633211 0000 0 0012222222221 111 2 89999999
Q ss_pred ccCCCCCC-----CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEEeecCCCCCC---CCcCceeeecCCCCe
Q 043422 266 SGWPSAGN-----EPYTSIENAQKYNKNLMDHVLGGKGTPRRPGQTFDTFLFEMFNENQKPA---GVEQNFGFFYPNMQP 337 (344)
Q Consensus 266 TGWPS~G~-----~~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F~~fDe~wK~~---~~E~~wGlf~~d~~~ 337 (344)
.|+.+.-+ ...-|.+.|..|++...+.+. ++|. -.-.|+..+||-....+ --..+.||++.||+|
T Consensus 509 yg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~------~~p~-~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~~~dr~~ 581 (604)
T PRK10150 509 YGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFD------RVPA-VVGEQVWNFADFATSQGILRVGGNKKGIFTRDRQP 581 (604)
T ss_pred cCCccccccccCCCCCCCHHHHHHHHHHHHHHHh------cCCc-eEEEEEEeeeccCCCCCCcccCCCcceeEcCCCCC
Confidence 99766321 113478889999888777764 2343 45689999999554421 123478999999999
Q ss_pred eec
Q 043422 338 IYP 340 (344)
Q Consensus 338 ky~ 340 (344)
|-.
T Consensus 582 k~~ 584 (604)
T PRK10150 582 KSA 584 (604)
T ss_pred hHH
Confidence 853
No 7
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.09 E-value=0.00055 Score=63.82 Aligned_cols=120 Identities=14% Similarity=0.088 Sum_probs=76.4
Q ss_pred eeeEeecCCCCCCCCHHHHHHHHhcCCCCEEEEccC-------------C-------hHHHHHHhcCCCeEEEeeCcc--
Q 043422 30 VIGVNYGLNGDNLPPPEQVIDLYGRCQINFVRLFEP-------------R-------HEVLEALRGRPQLLSLGTKNE-- 87 (344)
Q Consensus 30 ~~GvnYg~~~~n~ps~~~v~~llk~~~~~~VRiY~~-------------d-------~~vL~A~~~~gi~v~lGv~~~-- 87 (344)
..|+|-. ..++. ..++.++.+++.|++.|||.-. + ..+|+++++.||+|+|.+...
T Consensus 10 ~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~ 87 (281)
T PF00150_consen 10 WRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPG 87 (281)
T ss_dssp EEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTT
T ss_pred eeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 4566665 22112 6788899999999999999711 1 257889999999999988763
Q ss_pred ---hhhhhhhhHHHHHHHHHh---cccccC-CCccEEEEEecccccCCCC--------hHHHHHHHHHHHHHHHhcCCCC
Q 043422 88 ---EIQSIASSQQASDEWVKT---HVVPFV-DNVNIGYITVGNEVIPGTN--------AQYVGQAINNILNSLNNYGITK 152 (344)
Q Consensus 88 ---~~~~la~~~~~a~~wv~~---~v~~~~-~~~~I~~I~VGNEvl~~~~--------~~~Lv~am~~v~~aL~~~gl~~ 152 (344)
...... ......+|+++ .+...+ ....|.++=+.||+..... ...+.+.++.+.+++++.+-..
T Consensus 88 w~~~~~~~~-~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~ 166 (281)
T PF00150_consen 88 WANGGDGYG-NNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNH 166 (281)
T ss_dssp CSSSTSTTT-THHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSS
T ss_pred ccccccccc-cchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcc
Confidence 010111 11112222211 222222 3345789999999997321 2678899999999999998753
No 8
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.44 E-value=0.015 Score=54.68 Aligned_cols=77 Identities=13% Similarity=0.158 Sum_probs=53.1
Q ss_pred HHHHcCCCCccEEEeeccCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEEeecC-CCCCCCCcCce
Q 043422 250 ALEKIDVPNVTLAISESGWPSAGNEPYTSIENAQKYNKNLMDHVLGGKGTPRRPGQTFDTFLFEMFNE-NQKPAGVEQNF 328 (344)
Q Consensus 250 al~~~g~~~~~vvVtETGWPS~G~~~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F~~fDe-~wK~~~~E~~w 328 (344)
.|++++-.+++|+|||.+-|..+ +.+.|+.++++++..+.+. | + -..+++..+.|. .|.+ +.+-
T Consensus 174 ~l~~~~~~g~pi~iTE~dv~~~~-----~~~~qA~~~~~~l~~~~~~---p---~-v~gi~~Wg~~d~~~W~~---~~~~ 238 (254)
T smart00633 174 ALDRFASLGLEIQITELDISGYP-----NPQAQAADYEEVFKACLAH---P---A-VTGVTVWGVTDKYSWLD---GGAP 238 (254)
T ss_pred HHHHHHHcCCceEEEEeecCCCC-----cHHHHHHHHHHHHHHHHcC---C---C-eeEEEEeCCccCCcccC---CCCc
Confidence 34444434899999999998742 4488899999999988643 2 1 134555566653 3543 2577
Q ss_pred eeecCCCCeeecC
Q 043422 329 GFFYPNMQPIYPF 341 (344)
Q Consensus 329 Glf~~d~~~ky~l 341 (344)
|||+.|++||-..
T Consensus 239 ~L~d~~~~~kpa~ 251 (254)
T smart00633 239 LLFDANYQPKPAY 251 (254)
T ss_pred eeECCCCCCChhh
Confidence 9999999998654
No 9
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.16 E-value=0.02 Score=53.39 Aligned_cols=163 Identities=17% Similarity=0.137 Sum_probs=93.6
Q ss_pred ccEEEEEecccccC-C--CC-hHHHHHHHHHHHHHHHhcCCCCceEEeeeeccceecccCCCCCcccchhHHHHHHHHHH
Q 043422 114 VNIGYITVGNEVIP-G--TN-AQYVGQAINNILNSLNNYGITKQIKVTTVLPGTSLASSYPPSAGAFTNEAAAVLKDIAQ 189 (344)
Q Consensus 114 ~~I~~I~VGNEvl~-~--~~-~~~Lv~am~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~PPs~g~F~~~~~~~~~~~l~ 189 (344)
..+++|..=||.=. + ++ +++.+....+..+.|+. ..+|+..|..... ..-+|+.. +-|...++
T Consensus 64 ~~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~----~~~~l~sPa~~~~--~~~~~~g~-------~Wl~~F~~ 130 (239)
T PF11790_consen 64 PGSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS----PGVKLGSPAVAFT--NGGTPGGL-------DWLSQFLS 130 (239)
T ss_pred cCccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc----CCcEEECCeeccc--CCCCCCcc-------HHHHHHHH
Confidence 45888999999987 2 23 66667666666666663 2467766532100 00011111 23444444
Q ss_pred HHh--hcCCceeeccCCcccccCCCCCcCcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHcCCCCccEEEeecc
Q 043422 190 NLW--HRGFPIMINVYPYFAYASDPSHISLDYALFQSKDPVVRDGPYLYYNLFDAMVDAFHSALEKIDVPNVTLAISESG 267 (344)
Q Consensus 190 fL~--~~~d~~~vNiyPyf~~~~~~~~i~l~~A~f~~~~~~~~~~~~~y~n~fda~~da~~~al~~~g~~~~~vvVtETG 267 (344)
-+. -..|++.+|.| .. +. .-|...++.++ ++. +|||+|||.|
T Consensus 131 ~~~~~~~~D~iavH~Y---~~--~~-------------------------~~~~~~i~~~~---~~~---~kPIWITEf~ 174 (239)
T PF11790_consen 131 ACARGCRVDFIAVHWY---GG--DA-------------------------DDFKDYIDDLH---NRY---GKPIWITEFG 174 (239)
T ss_pred hcccCCCccEEEEecC---Cc--CH-------------------------HHHHHHHHHHH---HHh---CCCEEEEeec
Confidence 332 25566666655 10 00 11233344433 333 3999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEEeecCCCCCCCCcCceeeecCCCCe
Q 043422 268 WPSAGNEPYTSIENAQKYNKNLMDHVLGGKGTPRRPGQTFDTFLFEMFNENQKPAGVEQNFGFFYPNMQP 337 (344)
Q Consensus 268 WPS~G~~~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F~~fDe~wK~~~~E~~wGlf~~d~~~ 337 (344)
+...+. ..+.++++.|++..+..+.+. +. --.++||...+ .+. ++...-.|++.+|++
T Consensus 175 ~~~~~~--~~~~~~~~~fl~~~~~~ld~~------~~-VeryawF~~~~-~~~--~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 175 CWNGGS--QGSDEQQASFLRQALPWLDSQ------PY-VERYAWFGFMN-DGS--GVNPNSALLDADGSL 232 (239)
T ss_pred ccCCCC--CCCHHHHHHHHHHHHHHHhcC------CC-eeEEEeccccc-ccC--CCccccccccCCCCc
Confidence 876332 589999999999999998532 22 23577888333 222 356666777777754
No 10
>TIGR03356 BGL beta-galactosidase.
Probab=95.74 E-value=1.7 Score=44.07 Aligned_cols=43 Identities=12% Similarity=0.054 Sum_probs=33.0
Q ss_pred HHHHHHHhcCCCCEEEEc--------c----CC-------hHHHHHHhcCCCeEEEeeCcch
Q 043422 46 EQVIDLYGRCQINFVRLF--------E----PR-------HEVLEALRGRPQLLSLGTKNEE 88 (344)
Q Consensus 46 ~~v~~llk~~~~~~VRiY--------~----~d-------~~vL~A~~~~gi~v~lGv~~~~ 88 (344)
+|-+++|+..|++++|+= + .| .+++..+.+.||++++.+..-+
T Consensus 57 ~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd 118 (427)
T TIGR03356 57 EEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWD 118 (427)
T ss_pred HHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCC
Confidence 466889999999988862 1 12 2688999999999999995533
No 11
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=95.72 E-value=0.39 Score=45.90 Aligned_cols=96 Identities=18% Similarity=0.163 Sum_probs=52.8
Q ss_pred eeeEeecCCCCC---CCCHHHH---HHHHhcCCCCEEEEcc--CChHHHHHHhcCCCeEEEeeCcchh---hhh------
Q 043422 30 VIGVNYGLNGDN---LPPPEQV---IDLYGRCQINFVRLFE--PRHEVLEALRGRPQLLSLGTKNEEI---QSI------ 92 (344)
Q Consensus 30 ~~GvnYg~~~~n---~ps~~~v---~~llk~~~~~~VRiY~--~d~~vL~A~~~~gi~v~lGv~~~~~---~~l------ 92 (344)
..|||+...... .++.+++ ++++|..|++.||+.. .++..+.+|...||-|+..++.... +..
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 359998864322 2455554 4577899999999964 3579999999999999987765100 000
Q ss_pred ---hhhHHHHHHHHHhcccccCCCccEEEEEecccc
Q 043422 93 ---ASSQQASDEWVKTHVVPFVDNVNIGYITVGNEV 125 (344)
Q Consensus 93 ---a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEv 125 (344)
....+.+.+.++..|..+...-.|..=++|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 011122222334444444323358888999999
No 12
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=95.08 E-value=0.21 Score=50.97 Aligned_cols=277 Identities=16% Similarity=0.162 Sum_probs=128.2
Q ss_pred HHHHHHHhcCCCCEEEEc--------c-----CC-------hHHHHHHhcCCCeEEEeeCcchhhhhhh------hHHHH
Q 043422 46 EQVIDLYGRCQINFVRLF--------E-----PR-------HEVLEALRGRPQLLSLGTKNEEIQSIAS------SQQAS 99 (344)
Q Consensus 46 ~~v~~llk~~~~~~VRiY--------~-----~d-------~~vL~A~~~~gi~v~lGv~~~~~~~la~------~~~~a 99 (344)
+|.+++||+.|++..|.= + .| .+++..|...||+.+|.+..-+++..-. +.+.
T Consensus 61 ~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~- 139 (455)
T PF00232_consen 61 KEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRET- 139 (455)
T ss_dssp HHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHH-
T ss_pred hHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHH-
Confidence 567889999999888864 1 12 2688999999999999998655443111 1111
Q ss_pred HHHHH----hcccccCCCccEEEEEecccccC--------CCC-------------hHHHHHHHHHHHHHHHhcCCCCce
Q 043422 100 DEWVK----THVVPFVDNVNIGYITVGNEVIP--------GTN-------------AQYVGQAINNILNSLNNYGITKQI 154 (344)
Q Consensus 100 ~~wv~----~~v~~~~~~~~I~~I~VGNEvl~--------~~~-------------~~~Lv~am~~v~~aL~~~gl~~~I 154 (344)
..+.. .-+..| + +.|+.-+.=||... +.. ...++-+-..+.+++++..-+ .
T Consensus 140 ~~~F~~Ya~~~~~~~-g-d~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~--~ 215 (455)
T PF00232_consen 140 VDWFARYAEFVFERF-G-DRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPD--G 215 (455)
T ss_dssp HHHHHHHHHHHHHHH-T-TTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCT--S
T ss_pred HHHHHHHHHHHHHHh-C-CCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccc--e
Confidence 11211 112222 3 46888888899863 110 223555555556666766643 4
Q ss_pred EEeeeeccceec--ccCCCC---------------------CcccchhHHHHHH----------HHHHHHhhcCCceeec
Q 043422 155 KVTTVLPGTSLA--SSYPPS---------------------AGAFTNEAAAVLK----------DIAQNLWHRGFPIMIN 201 (344)
Q Consensus 155 ~VsT~~~~~~l~--~s~PPs---------------------~g~F~~~~~~~~~----------~~l~fL~~~~d~~~vN 201 (344)
+|+.++...... +..|+. .|.|..++...+. .-++.|..+.|++++|
T Consensus 216 ~IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiN 295 (455)
T PF00232_consen 216 KIGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGIN 295 (455)
T ss_dssp EEEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEE
T ss_pred EEeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhc
Confidence 566665543221 000111 1111111100000 1123345679999999
Q ss_pred cCCcccccCCC-CCcCccccc---ccC---CCccccCCCccchhHHHHHHHHHHHHHHHcCCCCccEEEeeccCCCCCCC
Q 043422 202 VYPYFAYASDP-SHISLDYAL---FQS---KDPVVRDGPYLYYNLFDAMVDAFHSALEKIDVPNVTLAISESGWPSAGNE 274 (344)
Q Consensus 202 iyPyf~~~~~~-~~i~l~~A~---f~~---~~~~~~~~~~~y~n~fda~~da~~~al~~~g~~~~~vvVtETGWPS~G~~ 274 (344)
-|.=---...+ ......+.. +.. +.....+.++.+. -..+.+.+.. +. .-++++||+|||.|++.....
T Consensus 296 YYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~--P~Gl~~~L~~-l~-~~Y~~~pI~ITENG~~~~~~~ 371 (455)
T PF00232_consen 296 YYTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIY--PEGLRDVLRY-LK-DRYGNPPIYITENGIGDPDEV 371 (455)
T ss_dssp ESEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBE--THHHHHHHHH-HH-HHHTSSEEEEEEE---EETTC
T ss_pred cccceeeccCccccccccccCCccccccccccccccccCcccc--cchHhhhhhh-hc-cccCCCcEEEecccccccccc
Confidence 88533222222 111111110 000 0000111221111 1112222221 11 126789999999999876541
Q ss_pred -CC-----CCHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEEeecCCCCC-CCCcCceeeecCC------CCeee
Q 043422 275 -PY-----TSIENAQKYNKNLMDHVLGGKGTPRRPGQTFDTFLFEMFNENQKP-AGVEQNFGFFYPN------MQPIY 339 (344)
Q Consensus 275 -~~-----as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F~~fDe~wK~-~~~E~~wGlf~~d------~~~ky 339 (344)
.+ --+.--+.+++.+.+.+. .|-+ -.-+|..++.|- +-- .+..+.|||++-| |+||-
T Consensus 372 ~~~~v~D~~Ri~yl~~hl~~v~~Ai~--dGv~-----V~GY~~WSl~Dn-~Ew~~Gy~~rfGl~~VD~~~~~~R~pK~ 441 (455)
T PF00232_consen 372 DDGKVDDDYRIDYLQDHLNQVLKAIE--DGVN-----VRGYFAWSLLDN-FEWAEGYKKRFGLVYVDFFDTLKRTPKK 441 (455)
T ss_dssp TTSHBSHHHHHHHHHHHHHHHHHHHH--TT-E-----EEEEEEETSB----BGGGGGGSE--SEEEETTTTTEEEEBH
T ss_pred cccCcCcHHHHHHHHHHHHHHHhhhc--cCCC-----eeeEeeeccccc-cccccCccCccCceEEcCCCCcCeeecc
Confidence 11 111223445555555552 3321 134777788873 322 3688999999999 77764
No 13
>PRK09936 hypothetical protein; Provisional
Probab=82.75 E-value=8.9 Score=37.05 Aligned_cols=59 Identities=12% Similarity=0.063 Sum_probs=42.5
Q ss_pred eeeEeecCCCCC-CCCHHHHH---HHHhcCCCCEEEEc-----cCC--------hHHHHHHhcCCCeEEEeeCcch
Q 043422 30 VIGVNYGLNGDN-LPPPEQVI---DLYGRCQINFVRLF-----EPR--------HEVLEALRGRPQLLSLGTKNEE 88 (344)
Q Consensus 30 ~~GvnYg~~~~n-~ps~~~v~---~llk~~~~~~VRiY-----~~d--------~~vL~A~~~~gi~v~lGv~~~~ 88 (344)
.-|+=|-|...| --++++-- +.++..|++.+=+= +.| .+.|.++...||+|.||++-|.
T Consensus 21 ~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp 96 (296)
T PRK09936 21 MKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADP 96 (296)
T ss_pred cccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCCh
Confidence 457779999877 45666654 45567888765432 222 3688888999999999999763
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=81.00 E-value=4.9 Score=39.76 Aligned_cols=83 Identities=17% Similarity=0.121 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCCCEEEEccC------------C----hHHHHHHhcCCCeEEEeeCcchhhh-----------------
Q 043422 45 PEQVIDLYGRCQINFVRLFEP------------R----HEVLEALRGRPQLLSLGTKNEEIQS----------------- 91 (344)
Q Consensus 45 ~~~v~~llk~~~~~~VRiY~~------------d----~~vL~A~~~~gi~v~lGv~~~~~~~----------------- 91 (344)
.++.++++|..|++.|||-.. | -.+|..+++.||+|+|+++....+.
T Consensus 12 ~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~ 91 (374)
T PF02449_consen 12 WEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGR 91 (374)
T ss_dssp HHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTS
T ss_pred HHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCC
Confidence 355677888899999997422 1 2678888999999999996321100
Q ss_pred ---------hh----hhHHHHHHHHHhcccccCCCccEEEEEecccccC
Q 043422 92 ---------IA----SSQQASDEWVKTHVVPFVDNVNIGYITVGNEVIP 127 (344)
Q Consensus 92 ---------la----~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~ 127 (344)
.. .-.+.+.+.+++-+..|.....|.++.|+||.-.
T Consensus 92 ~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 92 RRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp BEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred cCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 00 0122344444444445544457999999999865
No 15
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=79.61 E-value=19 Score=34.51 Aligned_cols=83 Identities=14% Similarity=0.202 Sum_probs=49.7
Q ss_pred hHHHHHHhcCCCeEEEeeCcch--------hhhhhhhHHHHHHHHHhcccccCCCccEEEEEecccccCCCChHHHHHHH
Q 043422 67 HEVLEALRGRPQLLSLGTKNEE--------IQSIASSQQASDEWVKTHVVPFVDNVNIGYITVGNEVIPGTNAQYVGQAI 138 (344)
Q Consensus 67 ~~vL~A~~~~gi~v~lGv~~~~--------~~~la~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~Lv~am 138 (344)
++++.++++.|+||++.|.+.. ...+.++++.-... .+++..+.-.-.+.+|-+-=|.+..+.....+.-|
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~f-i~~iv~~l~~~~~DGidiDwE~~~~~d~~~~~~fl 126 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRL-INNILALAKKYGYDGVNIDFENVPPEDREAYTQFL 126 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHH-HHHHHHHHHHhCCCcEEEecccCCHHHHHHHHHHH
Confidence 6788888888999998886532 22344443322222 22233222112355666655655433356788999
Q ss_pred HHHHHHHHhcCC
Q 043422 139 NNILNSLNNYGI 150 (344)
Q Consensus 139 ~~v~~aL~~~gl 150 (344)
+++|.+|++.|+
T Consensus 127 ~~lr~~l~~~~~ 138 (313)
T cd02874 127 RELSDRLHPAGY 138 (313)
T ss_pred HHHHHHhhhcCc
Confidence 999999987764
No 16
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=78.87 E-value=17 Score=35.95 Aligned_cols=92 Identities=11% Similarity=0.175 Sum_probs=55.2
Q ss_pred CCCEEEEccC-ChHHHHHHhcCCCeEEEeeCcchhhhhhhhHHHHHHHHHhcccccCCCccEEEEEecccccCC---CCh
Q 043422 56 QINFVRLFEP-RHEVLEALRGRPQLLSLGTKNEEIQSIASSQQASDEWVKTHVVPFVDNVNIGYITVGNEVIPG---TNA 131 (344)
Q Consensus 56 ~~~~VRiY~~-d~~vL~A~~~~gi~v~lGv~~~~~~~la~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~---~~~ 131 (344)
.+++|-+|+. |++++..++..|++|++..-.. ...+. +++.-..+++.. ..+.......+|-+==|-... ...
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l~-~~~~R~~fi~si-v~~~~~~gfDGIdIDwE~p~~~~~~d~ 131 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQIS-NPTYRTQWIQQK-VELAKSQFMDGINIDIEQPITKGSPEY 131 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHcC-CHHHHHHHHHHH-HHHHHHhCCCeEEEcccCCCCCCcchH
Confidence 5788888854 7899999999999998864321 22222 333233333322 222111234555554454321 125
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 043422 132 QYVGQAINNILNSLNNYGI 150 (344)
Q Consensus 132 ~~Lv~am~~v~~aL~~~gl 150 (344)
..+..-|+++|++|++.+.
T Consensus 132 ~~~t~llkelr~~l~~~~~ 150 (358)
T cd02875 132 YALTELVKETTKAFKKENP 150 (358)
T ss_pred HHHHHHHHHHHHHHhhcCC
Confidence 6788999999999998764
No 17
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=74.25 E-value=22 Score=34.86 Aligned_cols=174 Identities=14% Similarity=0.193 Sum_probs=67.8
Q ss_pred HHHHHhcCCCeEEEeeCcchhhhhhhhHHHHHHHHHhcccccC-----CCccEEEEEecccccC-C---CC-hHHHHHHH
Q 043422 69 VLEALRGRPQLLSLGTKNEEIQSIASSQQASDEWVKTHVVPFV-----DNVNIGYITVGNEVIP-G---TN-AQYVGQAI 138 (344)
Q Consensus 69 vL~A~~~~gi~v~lGv~~~~~~~la~~~~~a~~wv~~~v~~~~-----~~~~I~~I~VGNEvl~-~---~~-~~~Lv~am 138 (344)
+-.-+..+|.+|+.|+.--.-.........-..|=-+|.+.+. ..-+|.+-=.|||.-. + .+ +.++..-.
T Consensus 114 l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD~ 193 (319)
T PF03662_consen 114 LNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKDF 193 (319)
T ss_dssp HHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHHH
T ss_pred HHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHHH
Confidence 3444456999999999642111101111223456555533321 1235777889999654 2 23 78888888
Q ss_pred HHHHHHHHhc---CCCCceEEeeeeccceecccCCCCCcccchhHHHHHHHHHHHHhh-cCCceeeccCCcccccCCCCC
Q 043422 139 NNILNSLNNY---GITKQIKVTTVLPGTSLASSYPPSAGAFTNEAAAVLKDIAQNLWH-RGFPIMINVYPYFAYASDPSH 214 (344)
Q Consensus 139 ~~v~~aL~~~---gl~~~I~VsT~~~~~~l~~s~PPs~g~F~~~~~~~~~~~l~fL~~-~~d~~~vNiyPyf~~~~~~~~ 214 (344)
..+|+.|+.. .+.+ -+|.-|.. .|..+ .+++.|+-..+ ..|.+.-|.|+. ....++.
T Consensus 194 ~~Lr~il~~iy~~~~~~-P~v~gP~~-------------~~d~~---w~~~FL~~~g~~~vD~vT~H~Y~l-g~g~d~~- 254 (319)
T PF03662_consen 194 IQLRKILNEIYKNALPG-PLVVGPGG-------------FFDAD---WLKEFLKASGPGVVDAVTWHHYNL-GSGRDPA- 254 (319)
T ss_dssp ---HHHHHHHHHH-TT----EEEEEE-------------SS-GG---GHHHHHHHTTTT--SEEEEEEEEE---TT-TT-
T ss_pred HHHHHHHHHHHhcCCCC-CeEECCCC-------------CCCHH---HHHHHHHhcCCCccCEEEEEecCC-CCCchHH-
Confidence 8888888763 1111 12444432 12222 24444444444 367888888853 2211110
Q ss_pred cCcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHcCCCCccEEEeeccCCCCCCC
Q 043422 215 ISLDYALFQSKDPVVRDGPYLYYNLFDAMVDAFHSALEKIDVPNVTLAISESGWPSAGNE 274 (344)
Q Consensus 215 i~l~~A~f~~~~~~~~~~~~~y~n~fda~~da~~~al~~~g~~~~~vvVtETGWPS~G~~ 274 (344)
. ++ .+. +. .|-+-+..++..+...+++.+ |+++++++|||=...|+.
T Consensus 255 l-~~-~~l--------~p--~~Ld~~~~~~~~~~~~v~~~~-p~~~~WlGEtg~Ay~gG~ 301 (319)
T PF03662_consen 255 L-IE-DFL--------NP--SYLDTLADTFQKLQQVVQEYG-PGKPVWLGETGSAYNGGA 301 (319)
T ss_dssp --HH-HHT--------S----HHHHHHHHHHHHH-----HH-H---EEEEEEEEESTT--
T ss_pred H-HH-Hhc--------Ch--hhhhHHHHHHHHHhhhhcccC-CCCCeEEeCcccccCCCC
Confidence 0 01 010 11 122223334444444444444 789999999996665653
No 18
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=69.48 E-value=15 Score=26.79 Aligned_cols=44 Identities=11% Similarity=0.140 Sum_probs=36.0
Q ss_pred CCHHHHHHHHhcCCCCEEEEccCC-----hHHHHHHhcCCCeEEEeeCc
Q 043422 43 PPPEQVIDLYGRCQINFVRLFEPR-----HEVLEALRGRPQLLSLGTKN 86 (344)
Q Consensus 43 ps~~~v~~llk~~~~~~VRiY~~d-----~~vL~A~~~~gi~v~lGv~~ 86 (344)
-+++++++..+.+|++.|=+=|.+ ......++..|++++.|+..
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 468899999999999999887776 35566677899999999864
No 19
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=68.98 E-value=43 Score=38.07 Aligned_cols=99 Identities=20% Similarity=0.088 Sum_probs=57.5
Q ss_pred eeeEeecCCCCC---CCCHHHH---HHHHhcCCCCEEEEccC--ChHHHHHHhcCCCeEEEeeCcchh-----hhhhhhH
Q 043422 30 VIGVNYGLNGDN---LPPPEQV---IDLYGRCQINFVRLFEP--RHEVLEALRGRPQLLSLGTKNEEI-----QSIASSQ 96 (344)
Q Consensus 30 ~~GvnYg~~~~n---~ps~~~v---~~llk~~~~~~VRiY~~--d~~vL~A~~~~gi~v~lGv~~~~~-----~~la~~~ 96 (344)
..|+|+-..... -.+++++ ++++|..|++.||+-.. ++..+..|-..||-|+--++.... ..+..++
T Consensus 352 lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp 431 (1027)
T PRK09525 352 IRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDP 431 (1027)
T ss_pred EEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCH
Confidence 358887543221 2455554 56779999999999532 578999999999988866543110 0011111
Q ss_pred ---HHHHHHHHhcccccCCCccEEEEEecccccCC
Q 043422 97 ---QASDEWVKTHVVPFVDNVNIGYITVGNEVIPG 128 (344)
Q Consensus 97 ---~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~ 128 (344)
++..+-++..|......-.|..=++|||.-.+
T Consensus 432 ~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~~g 466 (1027)
T PRK09525 432 RWLPAMSERVTRMVQRDRNHPSIIIWSLGNESGHG 466 (1027)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCCcC
Confidence 11122233334443323458889999997543
No 20
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=63.30 E-value=12 Score=38.53 Aligned_cols=47 Identities=13% Similarity=0.122 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCCCEEEE-------c--c---CC-------hHHHHHHhcCCCeEEEeeCcchhhh
Q 043422 45 PEQVIDLYGRCQINFVRL-------F--E---PR-------HEVLEALRGRPQLLSLGTKNEEIQS 91 (344)
Q Consensus 45 ~~~v~~llk~~~~~~VRi-------Y--~---~d-------~~vL~A~~~~gi~v~lGv~~~~~~~ 91 (344)
-+|.++|+|+.|++.-|. + + .| .+++.+|.+.||+-+|.+..-+++.
T Consensus 56 y~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 121 (469)
T PRK13511 56 YPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPE 121 (469)
T ss_pred hHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcH
Confidence 357788999988877664 3 1 13 3789999999999999998755543
No 21
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=62.85 E-value=53 Score=37.28 Aligned_cols=99 Identities=22% Similarity=0.165 Sum_probs=56.9
Q ss_pred eeeEeecCCCCC---CCCHHHH---HHHHhcCCCCEEEEccC--ChHHHHHHhcCCCeEEEeeCcch--------hhhhh
Q 043422 30 VIGVNYGLNGDN---LPPPEQV---IDLYGRCQINFVRLFEP--RHEVLEALRGRPQLLSLGTKNEE--------IQSIA 93 (344)
Q Consensus 30 ~~GvnYg~~~~n---~ps~~~v---~~llk~~~~~~VRiY~~--d~~vL~A~~~~gi~v~lGv~~~~--------~~~la 93 (344)
..|+|+-..... ..+++++ ++++|+.|++.||+-.. ++..+.+|-..||-|+--++... ...+.
T Consensus 336 lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~ 415 (1021)
T PRK10340 336 LHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRIT 415 (1021)
T ss_pred EEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCccccccccccc
Confidence 358886533211 2345444 56789999999999643 46789999999998887542110 00011
Q ss_pred hhH---HHHHHHHHhcccccCCCccEEEEEecccccCC
Q 043422 94 SSQ---QASDEWVKTHVVPFVDNVNIGYITVGNEVIPG 128 (344)
Q Consensus 94 ~~~---~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~ 128 (344)
.++ ++..+-++..|......-.|..=++|||.-.+
T Consensus 416 ~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~g 453 (1021)
T PRK10340 416 DDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGYG 453 (1021)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcccc
Confidence 111 11122233444444333458888999998654
No 22
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.61 E-value=32 Score=34.38 Aligned_cols=57 Identities=19% Similarity=0.277 Sum_probs=35.1
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCccEEEeeccCCCCCCC-----CCCCHHHHHHHHHHHHHHHhc
Q 043422 236 YYNLFDAMVDAFHSALEKIDVPNVTLAISESGWPSAGNE-----PYTSIENAQKYNKNLMDHVLG 295 (344)
Q Consensus 236 y~n~fda~~da~~~al~~~g~~~~~vvVtETGWPS~G~~-----~~as~~na~~y~~~li~~~~~ 295 (344)
|.|-|++-+--.-..+.-.|.+..+|+.| |||.|.- -..|-..++..+.++++.+..
T Consensus 125 fNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~ 186 (377)
T COG4782 125 FNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLAT 186 (377)
T ss_pred cCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHh
Confidence 33444433322222233457788899988 9999971 135666667777778877753
No 23
>PLN02814 beta-glucosidase
Probab=60.14 E-value=17 Score=37.93 Aligned_cols=73 Identities=22% Similarity=0.418 Sum_probs=42.8
Q ss_pred CCCccEEEeeccCCCCCCCCC---CCHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEEeecC-CCCCCCCcCceeee
Q 043422 256 VPNVTLAISESGWPSAGNEPY---TSIENAQKYNKNLMDHVLGGKGTPRRPGQTFDTFLFEMFNE-NQKPAGVEQNFGFF 331 (344)
Q Consensus 256 ~~~~~vvVtETGWPS~G~~~~---as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F~~fDe-~wK~~~~E~~wGlf 331 (344)
+++.||+|||-|++...+... -=++--+.+++.+.+.+. .|-|- .-+|.-++.|- .|. .+.++.|||+
T Consensus 385 Y~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~--dGv~V-----~GY~~WSllDnfEW~-~Gy~~RfGLv 456 (504)
T PLN02814 385 YNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIK--NGSDT-----RGYFVWSMIDLYELL-GGYTTSFGMY 456 (504)
T ss_pred cCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCE-----EEEeeccchhhhchh-ccccCccceE
Confidence 556689999999975432101 112233444455545542 44332 24777778772 243 3689999999
Q ss_pred cCCCC
Q 043422 332 YPNMQ 336 (344)
Q Consensus 332 ~~d~~ 336 (344)
+-|..
T Consensus 457 yVD~~ 461 (504)
T PLN02814 457 YVNFS 461 (504)
T ss_pred EECCC
Confidence 98754
No 24
>PLN02998 beta-glucosidase
Probab=57.25 E-value=14 Score=38.47 Aligned_cols=73 Identities=21% Similarity=0.365 Sum_probs=43.1
Q ss_pred CCCccEEEeeccCCCCCCCCC---CCHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEEeecCCCCC-CCCcCceeee
Q 043422 256 VPNVTLAISESGWPSAGNEPY---TSIENAQKYNKNLMDHVLGGKGTPRRPGQTFDTFLFEMFNENQKP-AGVEQNFGFF 331 (344)
Q Consensus 256 ~~~~~vvVtETGWPS~G~~~~---as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F~~fDe~wK~-~~~E~~wGlf 331 (344)
+++.+|+|||-|+....+... -=++--+.+++.+.+.+. .|-+- .-+|.-++.| ++-- .+.++.|||+
T Consensus 390 Y~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~--dGv~V-----~GY~~WSl~D-nfEW~~Gy~~RfGLv 461 (497)
T PLN02998 390 YGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLR--KGSDV-----KGYFQWSLMD-VFELFGGYERSFGLL 461 (497)
T ss_pred cCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCE-----EEEeeccchh-hhchhccccCccceE
Confidence 555589999999987532101 112233445555555552 44322 2467777777 3322 3689999999
Q ss_pred cCCCC
Q 043422 332 YPNMQ 336 (344)
Q Consensus 332 ~~d~~ 336 (344)
+-|..
T Consensus 462 ~VD~~ 466 (497)
T PLN02998 462 YVDFK 466 (497)
T ss_pred EECCC
Confidence 98754
No 25
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=55.96 E-value=1.5e+02 Score=30.84 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=39.2
Q ss_pred HHHHhcccccC-CCccEEEEEecccccCC--------C--C-hHHHHHHHHH-HHHHHHhcCCCCceEEee
Q 043422 101 EWVKTHVVPFV-DNVNIGYITVGNEVIPG--------T--N-AQYVGQAINN-ILNSLNNYGITKQIKVTT 158 (344)
Q Consensus 101 ~wv~~~v~~~~-~~~~I~~I~VGNEvl~~--------~--~-~~~Lv~am~~-v~~aL~~~gl~~~I~VsT 158 (344)
+.+.+-|+.|- -+..|.+|++.||...+ . . +++....|++ +.-+|+++|++.++|+-.
T Consensus 208 ~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~ 278 (496)
T PF02055_consen 208 DYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILI 278 (496)
T ss_dssp HHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 34555666653 24679999999999851 1 1 6677788876 999999999866677643
No 26
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=55.78 E-value=13 Score=32.80 Aligned_cols=38 Identities=13% Similarity=0.040 Sum_probs=26.9
Q ss_pred HHHHHhcCCCCEEEEccCChHHHHHHhcCCCeEEEeeC
Q 043422 48 VIDLYGRCQINFVRLFEPRHEVLEALRGRPQLLSLGTK 85 (344)
Q Consensus 48 v~~llk~~~~~~VRiY~~d~~vL~A~~~~gi~v~lGv~ 85 (344)
-+++|+..|+++||+.+.+|.-+.++.+.||+|.=-||
T Consensus 131 gaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 131 GAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 36788999999999999999999999999999865443
No 27
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=55.69 E-value=2.5e+02 Score=28.89 Aligned_cols=246 Identities=15% Similarity=0.127 Sum_probs=110.5
Q ss_pred HHHHHhcCCCCEEEEccC---C--------------------hHHHHHHhcCCCeEEEeeC--cchhh------------
Q 043422 48 VIDLYGRCQINFVRLFEP---R--------------------HEVLEALRGRPQLLSLGTK--NEEIQ------------ 90 (344)
Q Consensus 48 v~~llk~~~~~~VRiY~~---d--------------------~~vL~A~~~~gi~v~lGv~--~~~~~------------ 90 (344)
+..+.+..||+.||+.+. | -.++..+...|++-+|-+- ...+.
T Consensus 45 l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~~~~~~~~~ 124 (486)
T PF01229_consen 45 LRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMPMALASGYQTVFWYKGN 124 (486)
T ss_dssp HHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--EETTTTEE
T ss_pred HHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCCccccccCC
Confidence 334445679999998742 1 1578888899998755442 11110
Q ss_pred -----hhhhhHHHHHHHHHhcccccCCCccEE--EEEecccccCCC-----ChHHHHHHHHHHHHHHHhcCCCCceEEee
Q 043422 91 -----SIASSQQASDEWVKTHVVPFVDNVNIG--YITVGNEVIPGT-----NAQYVGQAINNILNSLNNYGITKQIKVTT 158 (344)
Q Consensus 91 -----~la~~~~~a~~wv~~~v~~~~~~~~I~--~I~VGNEvl~~~-----~~~~Lv~am~~v~~aL~~~gl~~~I~VsT 158 (344)
+...=.+-..++++..+..| +...|. ..=|=||.=..+ ...+-....+.+.++||+.. ..++|+-
T Consensus 125 ~~pp~~~~~W~~lv~~~~~h~~~RY-G~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~--p~~~vGG 201 (486)
T PF01229_consen 125 ISPPKDYEKWRDLVRAFARHYIDRY-GIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVD--PELKVGG 201 (486)
T ss_dssp -S-BS-HHHHHHHHHHHHHHHHHHH-HHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH---TTSEEEE
T ss_pred cCCcccHHHHHHHHHHHHHHHHhhc-CCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhC--CCCcccC
Confidence 00000111223333334443 111111 455688864421 23456677777788888875 3588887
Q ss_pred eeccceecccCCCCCcccchhHHHHHHHHHHHHhh---cCCceeeccCCcccccCCCCCcCcccccccCCCccccCCCcc
Q 043422 159 VLPGTSLASSYPPSAGAFTNEAAAVLKDIAQNLWH---RGFPIMINVYPYFAYASDPSHISLDYALFQSKDPVVRDGPYL 235 (344)
Q Consensus 159 ~~~~~~l~~s~PPs~g~F~~~~~~~~~~~l~fL~~---~~d~~~vNiyPyf~~~~~~~~i~l~~A~f~~~~~~~~~~~~~ 235 (344)
+-.. + .+ ...+...++|+.+ .-|++..|.||+=....... ... ..-..
T Consensus 202 p~~~--~---------~~----~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~~------------~~~--~~~~~ 252 (486)
T PF01229_consen 202 PAFA--W---------AY----DEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDINE------------NMY--ERIED 252 (486)
T ss_dssp EEEE--T---------T-----THHHHHHHHHHHHCT---SEEEEEEE-BESESE-SS-------------EE--EEB--
T ss_pred cccc--c---------cH----HHHHHHHHHHHhcCCCCCCEEEEEecccccccccch------------hHH--hhhhh
Confidence 7110 0 00 1235666777765 35778888888532111000 000 00000
Q ss_pred chhHHHHHHHHHHHHHHHcCCCCccEEEeeccCCCCCCC---CCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEE-
Q 043422 236 YYNLFDAMVDAFHSALEKIDVPNVTLAISESGWPSAGNE---PYTSIENAQKYNKNLMDHVLGGKGTPRRPGQTFDTFL- 311 (344)
Q Consensus 236 y~n~fda~~da~~~al~~~g~~~~~vvVtETGWPS~G~~---~~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~- 311 (344)
...+++ ++..+...+...+.+++++.+|| |.+.-.. -.-|.-+|+-..+++++.... ..+.|-
T Consensus 253 ~~~~~~-~~~~~~~~~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~----------~l~~~sy 319 (486)
T PF01229_consen 253 SRRLFP-ELKETRPIINDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDGA----------FLDSFSY 319 (486)
T ss_dssp HHHHHH-HHHHHHHHHHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGGG----------T-SEEEE
T ss_pred HHHHHH-HHHHHHHHHhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhhh----------hhhhhhc
Confidence 112222 22223334555678999999999 7765432 124556666556666666521 122221
Q ss_pred --E-EeecCCCCC-CCCcCceeeecCCCCee
Q 043422 312 --F-EMFNENQKP-AGVEQNFGFFYPNMQPI 338 (344)
Q Consensus 312 --F-~~fDe~wK~-~~~E~~wGlf~~d~~~k 338 (344)
| +.|.|+--+ ..+-.-|||++.+|-+|
T Consensus 320 wt~sD~Fee~~~~~~pf~ggfGLlt~~gI~K 350 (486)
T PF01229_consen 320 WTFSDRFEENGTPRKPFHGGFGLLTKLGIPK 350 (486)
T ss_dssp S-SBS---TTSS-SSSSSS-S-SEECCCEE-
T ss_pred cchhhhhhccCCCCCceecchhhhhccCCCc
Confidence 1 123333222 23555699999998666
No 28
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=53.96 E-value=81 Score=30.80 Aligned_cols=78 Identities=13% Similarity=0.186 Sum_probs=39.7
Q ss_pred HHHhc--CCCeEEEee--Ccc---hhhhhhhhHHHHHHHHHhcccccCCCccEEEEEecccccC--C---CChHHHHHHH
Q 043422 71 EALRG--RPQLLSLGT--KNE---EIQSIASSQQASDEWVKTHVVPFVDNVNIGYITVGNEVIP--G---TNAQYVGQAI 138 (344)
Q Consensus 71 ~A~~~--~gi~v~lGv--~~~---~~~~la~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~--~---~~~~~Lv~am 138 (344)
.++++ .++||++.| |.. ....++++++.....++ ++..+.....+.+|-+==|-.. + +....++..|
T Consensus 62 ~~lk~~~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~-~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll 140 (362)
T cd02872 62 NALKEKNPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIK-SAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLL 140 (362)
T ss_pred HHHHhhCCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHH-HHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHH
Confidence 34444 589998877 332 23444444432222222 2222211113444444333322 1 1246788999
Q ss_pred HHHHHHHHhcC
Q 043422 139 NNILNSLNNYG 149 (344)
Q Consensus 139 ~~v~~aL~~~g 149 (344)
+++|++|++.+
T Consensus 141 ~~lr~~l~~~~ 151 (362)
T cd02872 141 KELREAFEPEA 151 (362)
T ss_pred HHHHHHHHhhC
Confidence 99999998873
No 29
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=53.58 E-value=45 Score=29.40 Aligned_cols=82 Identities=11% Similarity=0.139 Sum_probs=43.4
Q ss_pred HHHHHHhcC--CCeEEEeeCcchhh---hhhhhHHHHHHHHHhcccccCCCccEEEEEecccccCCC---ChHHHHHHHH
Q 043422 68 EVLEALRGR--PQLLSLGTKNEEIQ---SIASSQQASDEWVKTHVVPFVDNVNIGYITVGNEVIPGT---NAQYVGQAIN 139 (344)
Q Consensus 68 ~vL~A~~~~--gi~v~lGv~~~~~~---~la~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~---~~~~Lv~am~ 139 (344)
.-++.+++. |+||++.+...... .++++.+...+.+ +++..+.....+++|-+==|-.... ....++..|+
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~-~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~ 131 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFA-NSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLR 131 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHH-HHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHH
Confidence 345566654 99998888653211 1233333222221 2222222112345555543443321 2578999999
Q ss_pred HHHHHHHhcCC
Q 043422 140 NILNSLNNYGI 150 (344)
Q Consensus 140 ~v~~aL~~~gl 150 (344)
++|++|.+.++
T Consensus 132 ~lr~~l~~~~~ 142 (210)
T cd00598 132 ELRSALGAANY 142 (210)
T ss_pred HHHHHhcccCc
Confidence 99999977654
No 30
>PLN02849 beta-glucosidase
Probab=52.30 E-value=18 Score=37.62 Aligned_cols=73 Identities=22% Similarity=0.331 Sum_probs=43.0
Q ss_pred CCCccEEEeeccCCCCCCCCC-----CCHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEEeecCCCCC-CCCcCcee
Q 043422 256 VPNVTLAISESGWPSAGNEPY-----TSIENAQKYNKNLMDHVLGGKGTPRRPGQTFDTFLFEMFNENQKP-AGVEQNFG 329 (344)
Q Consensus 256 ~~~~~vvVtETGWPS~G~~~~-----as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F~~fDe~wK~-~~~E~~wG 329 (344)
+++.||+|||-|++......+ -=++.-+.+++.+.+.+. .|-+- .-+|.-++.| ++-- .+.++.||
T Consensus 383 Y~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~--dGv~V-----~GY~~WSl~D-nfEW~~Gy~~RfG 454 (503)
T PLN02849 383 YGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVR--NGSDT-----RGYFVWSFMD-LYELLKGYEFSFG 454 (503)
T ss_pred cCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCE-----EEEeeccchh-hhchhccccCccc
Confidence 555589999999986532101 112233344454544442 44322 2467777877 3332 46899999
Q ss_pred eecCCCC
Q 043422 330 FFYPNMQ 336 (344)
Q Consensus 330 lf~~d~~ 336 (344)
|++-|..
T Consensus 455 Li~VD~~ 461 (503)
T PLN02849 455 LYSVNFS 461 (503)
T ss_pred eEEECCC
Confidence 9998754
No 31
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=52.14 E-value=22 Score=32.09 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=29.8
Q ss_pred HHHHhcCCCCEEEEccCChHHHHHHhcCCCeEE
Q 043422 49 IDLYGRCQINFVRLFEPRHEVLEALRGRPQLLS 81 (344)
Q Consensus 49 ~~llk~~~~~~VRiY~~d~~vL~A~~~~gi~v~ 81 (344)
+++|+..|+++||+.+..+.-+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 678899999999999998878889999999986
No 32
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=51.75 E-value=22 Score=32.27 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=30.1
Q ss_pred HHHHhcCCCCEEEEccCChHHHHHHhcCCCeEE
Q 043422 49 IDLYGRCQINFVRLFEPRHEVLEALRGRPQLLS 81 (344)
Q Consensus 49 ~~llk~~~~~~VRiY~~d~~vL~A~~~~gi~v~ 81 (344)
+++|+..|+++||+.+..+.-..++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 688999999999999998878889999999996
No 33
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=50.85 E-value=38 Score=30.76 Aligned_cols=91 Identities=21% Similarity=0.353 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhcCCCCceEEeeeeccceecccCCCCCcccchhHHHHHHHHHHHHhhcCCceeeccC-CcccccCCCC
Q 043422 135 GQAINNILNSLNNYGITKQIKVTTVLPGTSLASSYPPSAGAFTNEAAAVLKDIAQNLWHRGFPIMINVY-PYFAYASDPS 213 (344)
Q Consensus 135 v~am~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~PPs~g~F~~~~~~~~~~~l~fL~~~~d~~~vNiy-Pyf~~~~~~~ 213 (344)
-.+++.+.+.+...|+.| |++.+.... ++|.. .....++++.+.+.+=|+.+|+- +.+...
T Consensus 84 ~~~~~~l~~~~~~~g~~G-v~l~~~~~~------~~~~~-------~~~~~~~~~~~~~~~~pv~~H~g~~~~~~~---- 145 (273)
T PF04909_consen 84 EDAVEELERALQELGFRG-VKLHPDLGG------FDPDD-------PRLDDPIFEAAEELGLPVLIHTGMTGFPDA---- 145 (273)
T ss_dssp HHHHHHHHHHHHTTTESE-EEEESSETT------CCTTS-------GHCHHHHHHHHHHHT-EEEEEESHTHHHHH----
T ss_pred hhHHHHHHHhccccceee-eEecCCCCc------ccccc-------HHHHHHHHHHHHhhccceeeeccccchhhh----
Confidence 467888888888888865 776553211 11111 11224888888888877776643 111100
Q ss_pred CcCcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHcCCCCccEEEeeccCC
Q 043422 214 HISLDYALFQSKDPVVRDGPYLYYNLFDAMVDAFHSALEKIDVPNVTLAISESGWP 269 (344)
Q Consensus 214 ~i~l~~A~f~~~~~~~~~~~~~y~n~fda~~da~~~al~~~g~~~~~vvVtETGWP 269 (344)
..-..+...+...+++ +|+++|++.+.|+|
T Consensus 146 ------------------------~~~~~~~~~~~~~~~~--~P~l~ii~~H~G~~ 175 (273)
T PF04909_consen 146 ------------------------PSDPADPEELEELLER--FPDLRIILAHLGGP 175 (273)
T ss_dssp ------------------------HHHHHHHHHHTTHHHH--STTSEEEESGGGTT
T ss_pred ------------------------hHHHHHHHHHHHHHHH--hcCCeEEEecCccc
Confidence 0111122222233444 79999999999999
No 34
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=49.36 E-value=83 Score=29.05 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=25.2
Q ss_pred HHcCCCCccEEEeeccCCCCCCC-----CCCCHHHHHHHHHHHHHHHh
Q 043422 252 EKIDVPNVTLAISESGWPSAGNE-----PYTSIENAQKYNKNLMDHVL 294 (344)
Q Consensus 252 ~~~g~~~~~vvVtETGWPS~G~~-----~~as~~na~~y~~~li~~~~ 294 (344)
..+++++.+|+.+ |||.|.. ...+...+...+..+++.+.
T Consensus 43 ~~~~~~~~~i~Fs---WPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~ 87 (233)
T PF05990_consen 43 HDLGFPGVVILFS---WPSDGSLLGYFYDRESARFSGPALARFLRDLA 87 (233)
T ss_pred HHhCCCceEEEEE---cCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 3456777666654 9999972 12445555666667777664
No 35
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=48.63 E-value=2.5e+02 Score=27.63 Aligned_cols=55 Identities=15% Similarity=0.078 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEeeeeccceecccCCCCCcccchhHHHHHHHHHHHHhhcCCceeeccCCc
Q 043422 131 AQYVGQAINNILNSLNNYGITKQIKVTTVLPGTSLASSYPPSAGAFTNEAAAVLKDIAQNLWHRGFPIMINVYPY 205 (344)
Q Consensus 131 ~~~Lv~am~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~PPs~g~F~~~~~~~~~~~l~fL~~~~d~~~vNiyPy 205 (344)
...+...++..++.|++..- +.+|+|-.... +.. ..| ... +++..|++..|.||.
T Consensus 208 ~~~~~~~~~~~~~~ir~~~p--~~~vt~n~~~~-~~~---------~~d-------~~~-~a~~~D~~~~d~Y~~ 262 (374)
T PF02449_consen 208 SDRVAEFFRWQADIIREYDP--DHPVTTNFMGS-WFN---------GID-------YFK-WAKYLDVVSWDSYPD 262 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHST--T-EEE-EE-TT-------------SS--------HHH-HGGGSSSEEEEE-HH
T ss_pred HHHHHHHHHHHHHHHHHhCC--CceEEeCcccc-ccC---------cCC-------HHH-HHhhCCcceeccccC
Confidence 56788899999999998863 46777753221 000 001 111 356789999999997
No 36
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=47.05 E-value=1.1e+02 Score=26.88 Aligned_cols=20 Identities=15% Similarity=0.081 Sum_probs=17.9
Q ss_pred HHHHHHhcCCCeEEEeeCcc
Q 043422 68 EVLEALRGRPQLLSLGTKNE 87 (344)
Q Consensus 68 ~vL~A~~~~gi~v~lGv~~~ 87 (344)
.+|+++.+.||||++|++-+
T Consensus 69 ~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 69 MILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHHHcCCEEEEeCCCC
Confidence 67899999999999999864
No 37
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=43.64 E-value=28 Score=34.88 Aligned_cols=32 Identities=9% Similarity=0.030 Sum_probs=29.2
Q ss_pred HHHHhcCCCCEEEEccCChHHHHHHhcCCCeEE
Q 043422 49 IDLYGRCQINFVRLFEPRHEVLEALRGRPQLLS 81 (344)
Q Consensus 49 ~~llk~~~~~~VRiY~~d~~vL~A~~~~gi~v~ 81 (344)
+++|+..|+++||+. .+|.-..++.+.||+|.
T Consensus 331 AqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~ 362 (369)
T PRK12485 331 AQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVV 362 (369)
T ss_pred HHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEE
Confidence 689999999999999 67888899999999986
No 38
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=43.42 E-value=50 Score=27.04 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCCCEEEEc--cCC---hHHHHHHhcCCCeEEE
Q 043422 46 EQVIDLYGRCQINFVRLF--EPR---HEVLEALRGRPQLLSL 82 (344)
Q Consensus 46 ~~v~~llk~~~~~~VRiY--~~d---~~vL~A~~~~gi~v~l 82 (344)
+++.+.++..|++.|+++ +.. +.+|++++..|+++.-
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 345567778899998888 443 5799999999998643
No 39
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=43.00 E-value=2.9e+02 Score=26.41 Aligned_cols=82 Identities=12% Similarity=0.149 Sum_probs=43.1
Q ss_pred HHHHHHhc--CCCeEE--E--eeCcc-hhhhhhhhHHHHHHHHHhcccccCCCccEEEEEec-ccccC----CCChHHHH
Q 043422 68 EVLEALRG--RPQLLS--L--GTKNE-EIQSIASSQQASDEWVKTHVVPFVDNVNIGYITVG-NEVIP----GTNAQYVG 135 (344)
Q Consensus 68 ~vL~A~~~--~gi~v~--l--Gv~~~-~~~~la~~~~~a~~wv~~~v~~~~~~~~I~~I~VG-NEvl~----~~~~~~Lv 135 (344)
..+.+++. .++||+ + |=|.. ....++++++.-..+++ ++..+...-.+.+|-+= =|... .+....++
T Consensus 55 ~~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi~-s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~ 133 (318)
T cd02876 55 GWIEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKLIK-LLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELI 133 (318)
T ss_pred HHHHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHHH-HHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHH
Confidence 34455554 578988 4 33543 24456556544344332 23333222234455442 12111 11245688
Q ss_pred HHHHHHHHHHHhcCC
Q 043422 136 QAINNILNSLNNYGI 150 (344)
Q Consensus 136 ~am~~v~~aL~~~gl 150 (344)
.-|+++|++|.+.|+
T Consensus 134 ~~l~el~~~l~~~~~ 148 (318)
T cd02876 134 QLVIHLGETLHSANL 148 (318)
T ss_pred HHHHHHHHHHhhcCC
Confidence 899999999988765
No 40
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=42.25 E-value=48 Score=34.26 Aligned_cols=47 Identities=11% Similarity=0.154 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCCCEEEE-------cc------CC-------hHHHHHHhcCCCeEEEeeCcchhhh
Q 043422 45 PEQVIDLYGRCQINFVRL-------FE------PR-------HEVLEALRGRPQLLSLGTKNEEIQS 91 (344)
Q Consensus 45 ~~~v~~llk~~~~~~VRi-------Y~------~d-------~~vL~A~~~~gi~v~lGv~~~~~~~ 91 (344)
-+|-++|||+.|++.-|. +- .+ .+++.+|.+.||+-+|.++.-+++.
T Consensus 75 y~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~ 141 (478)
T PRK09593 75 YKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPM 141 (478)
T ss_pred hHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCH
Confidence 356788999988876664 31 13 2688999999999999998755543
No 41
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=41.86 E-value=1.8e+02 Score=28.55 Aligned_cols=57 Identities=14% Similarity=-0.013 Sum_probs=38.6
Q ss_pred ceeeEeecCCCCCCCCHHHHHHHHhcCCCCEEEEccCChHHHHHHhcCCCeEEEeeCc
Q 043422 29 NVIGVNYGLNGDNLPPPEQVIDLYGRCQINFVRLFEPRHEVLEALRGRPQLLSLGTKN 86 (344)
Q Consensus 29 ~~~GvnYg~~~~n~ps~~~v~~llk~~~~~~VRiY~~d~~vL~A~~~~gi~v~lGv~~ 86 (344)
..+|||.-....+ |..++.++.+...+.+.|=+..-++...+.++..|++|+.-|+.
T Consensus 56 kPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s 112 (320)
T cd04743 56 KPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS 112 (320)
T ss_pred CCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC
Confidence 4578887544322 33455666666667777766555565578889999999988875
No 42
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=41.20 E-value=39 Score=30.42 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=29.7
Q ss_pred HHHHhcCCCCEEEEccCChHHHHHHhcCCCeEE
Q 043422 49 IDLYGRCQINFVRLFEPRHEVLEALRGRPQLLS 81 (344)
Q Consensus 49 ~~llk~~~~~~VRiY~~d~~vL~A~~~~gi~v~ 81 (344)
+++|+..|++++|+.+..+.-..++.+.|++|.
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv 165 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVV 165 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEE
Confidence 678899999999999988878889999999987
No 43
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=40.94 E-value=32 Score=34.37 Aligned_cols=35 Identities=9% Similarity=0.066 Sum_probs=30.6
Q ss_pred HHHHhcCCCCEEEEccCChHHHHHHhcCCCeEEEee
Q 043422 49 IDLYGRCQINFVRLFEPRHEVLEALRGRPQLLSLGT 84 (344)
Q Consensus 49 ~~llk~~~~~~VRiY~~d~~vL~A~~~~gi~v~lGv 84 (344)
+++|+..|+++||+.. +|.-..++.+.||+|.==+
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEe
Confidence 6899999999999999 8888899999999987333
No 44
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=39.54 E-value=1.9e+02 Score=27.77 Aligned_cols=95 Identities=18% Similarity=0.268 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcCCCCceEEeeeeccceecccCCCCCcccchhHHHHHHHHHHHHhhcCCceeeccCCcccccCCCCCc
Q 043422 136 QAINNILNSLNNYGITKQIKVTTVLPGTSLASSYPPSAGAFTNEAAAVLKDIAQNLWHRGFPIMINVYPYFAYASDPSHI 215 (344)
Q Consensus 136 ~am~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~PPs~g~F~~~~~~~~~~~l~fL~~~~d~~~vNiyPyf~~~~~~~~i 215 (344)
.+..++++..+..|+.| +++..... .+.|+ .+.+.|+.+++.+.+-|+.++.=+.....
T Consensus 113 ~a~~E~er~v~~~gf~g-~~l~p~~~------~~~~~--------~~~~~pi~~~a~~~gvpv~ihtG~~~~~~------ 171 (293)
T COG2159 113 AAAEELERRVRELGFVG-VKLHPVAQ------GFYPD--------DPRLYPIYEAAEELGVPVVIHTGAGPGGA------ 171 (293)
T ss_pred HHHHHHHHHHHhcCceE-EEeccccc------CCCCC--------ChHHHHHHHHHHHcCCCEEEEeCCCCCCc------
Confidence 35667777777777743 55432211 11111 13468999999999999999654433321
Q ss_pred CcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHcCCCCccEEEeecc--CCCCCC
Q 043422 216 SLDYALFQSKDPVVRDGPYLYYNLFDAMVDAFHSALEKIDVPNVTLAISESG--WPSAGN 273 (344)
Q Consensus 216 ~l~~A~f~~~~~~~~~~~~~y~n~fda~~da~~~al~~~g~~~~~vvVtETG--WPS~G~ 273 (344)
.++... .+- ..+|-+ +.+ +|+++||+++.| +|..-.
T Consensus 172 ~~~~~~---------------~~p--~~~~~v---a~~--fP~l~IVl~H~G~~~p~~~~ 209 (293)
T COG2159 172 GLEKGH---------------SDP--LYLDDV---ARK--FPELKIVLGHMGEDYPWELE 209 (293)
T ss_pred ccccCC---------------CCc--hHHHHH---HHH--CCCCcEEEEecCCCCchhHH
Confidence 111000 000 123332 222 799999999999 886643
No 45
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=37.63 E-value=66 Score=26.79 Aligned_cols=36 Identities=11% Similarity=0.084 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCCCEEEEc--c--------CC---hHHHHHHhcCCCeEE
Q 043422 46 EQVIDLYGRCQINFVRLF--E--------PR---HEVLEALRGRPQLLS 81 (344)
Q Consensus 46 ~~v~~llk~~~~~~VRiY--~--------~d---~~vL~A~~~~gi~v~ 81 (344)
+++.+.++.+|++.|+++ + +. +..|++++..||+|.
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~ 101 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 101 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEE
Confidence 445667778899988777 4 33 479999999999975
No 46
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=36.18 E-value=87 Score=32.81 Aligned_cols=73 Identities=18% Similarity=0.314 Sum_probs=47.8
Q ss_pred cCCCCccEEEeeccCCCCCCC----C-----CCCHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEEeecCC-CCCCC
Q 043422 254 IDVPNVTLAISESGWPSAGNE----P-----YTSIENAQKYNKNLMDHVLGGKGTPRRPGQTFDTFLFEMFNEN-QKPAG 323 (344)
Q Consensus 254 ~g~~~~~vvVtETGWPS~G~~----~-----~as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F~~fDe~-wK~~~ 323 (344)
-.|+|.+|.|+|-|-+...+. . ..=++..+.|++.+.+.+.. .|. . -.-+|..++-|-. |. .+
T Consensus 403 ~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgv-n----v~GYf~WSLmDnfEw~-~G 475 (524)
T KOG0626|consen 403 DKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGV-N----VKGYFVWSLLDNFEWL-DG 475 (524)
T ss_pred hhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCC-c----eeeEEEeEcccchhhh-cC
Confidence 347899999999999876542 1 12334556667777666631 221 1 2348889988843 44 46
Q ss_pred CcCceeeecC
Q 043422 324 VEQNFGFFYP 333 (344)
Q Consensus 324 ~E~~wGlf~~ 333 (344)
..-.||||+-
T Consensus 476 y~~RFGlyyV 485 (524)
T KOG0626|consen 476 YKVRFGLYYV 485 (524)
T ss_pred cccccccEEE
Confidence 7889999994
No 47
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=35.42 E-value=50 Score=33.30 Aligned_cols=37 Identities=16% Similarity=0.064 Sum_probs=32.5
Q ss_pred HHHHhcCCCCEEEEccCChHHHHHHhcCCCeEEEeeC
Q 043422 49 IDLYGRCQINFVRLFEPRHEVLEALRGRPQLLSLGTK 85 (344)
Q Consensus 49 ~~llk~~~~~~VRiY~~d~~vL~A~~~~gi~v~lGv~ 85 (344)
+++|+..|+++||+.+.++.-..++.+.||+|.=-++
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6788999999999999999889999999999974444
No 48
>PRK08815 GTP cyclohydrolase; Provisional
Probab=35.21 E-value=50 Score=33.13 Aligned_cols=37 Identities=19% Similarity=0.147 Sum_probs=31.9
Q ss_pred HHHHhcCCCCEEEEccCChHHHHHHhcCCCeEEEeeC
Q 043422 49 IDLYGRCQINFVRLFEPRHEVLEALRGRPQLLSLGTK 85 (344)
Q Consensus 49 ~~llk~~~~~~VRiY~~d~~vL~A~~~~gi~v~lGv~ 85 (344)
+++|+..|+++||+.+.++.-+.++.+.||+|.==++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6788999999999999999888899999999863343
No 49
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=35.17 E-value=48 Score=32.80 Aligned_cols=34 Identities=12% Similarity=0.079 Sum_probs=30.3
Q ss_pred HHHHHhcCCCCEEEEccCC-hHHHHHHhcCCCeEE
Q 043422 48 VIDLYGRCQINFVRLFEPR-HEVLEALRGRPQLLS 81 (344)
Q Consensus 48 v~~llk~~~~~~VRiY~~d-~~vL~A~~~~gi~v~ 81 (344)
.+++|+..|+++||+...+ +.-..++.+.||+|.
T Consensus 300 gaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 3678999999999999998 888889999999985
No 50
>PRK14052 effector protein; Provisional
Probab=35.05 E-value=81 Score=31.04 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=20.8
Q ss_pred CCeEEEeeCcchhhh-------hhhhHHHHHHHHHhc
Q 043422 77 PQLLSLGTKNEEIQS-------IASSQQASDEWVKTH 106 (344)
Q Consensus 77 gi~v~lGv~~~~~~~-------la~~~~~a~~wv~~~ 106 (344)
+-.+.-||+-+.+.. +..+.++|.+|+...
T Consensus 216 ~~dl~~gvyae~l~ed~~n~~~~t~nve~AA~WI~~a 252 (387)
T PRK14052 216 STDLSQGVYAEGLAEDAFNKNGVTDNVERAAAWIINA 252 (387)
T ss_pred cCccccchhhccccHhhcCcccccccHHHHHHHHHhc
Confidence 346788888765432 456778999998654
No 51
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=34.45 E-value=4.8e+02 Score=26.02 Aligned_cols=137 Identities=11% Similarity=0.084 Sum_probs=66.9
Q ss_pred CCCHHHHHHHH---hcCCCCEEEEcc-------CC-------hHHHHHHhcC-CCe-EEEeeCcchhhhhhhhHHHHHHH
Q 043422 42 LPPPEQVIDLY---GRCQINFVRLFE-------PR-------HEVLEALRGR-PQL-LSLGTKNEEIQSIASSQQASDEW 102 (344)
Q Consensus 42 ~ps~~~v~~ll---k~~~~~~VRiY~-------~d-------~~vL~A~~~~-gi~-v~lGv~~~~~~~la~~~~~a~~w 102 (344)
.-++++|++.+ ..+|++.|.+.+ .| .++++++... |++ +-++--. ...+. .+ ....
T Consensus 166 ~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~--p~~~~--~e-ll~~ 240 (414)
T TIGR01579 166 SVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSID--PEDID--EE-LLEA 240 (414)
T ss_pred cCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCC--hhhCC--HH-HHHH
Confidence 34778887644 346899998753 22 2566666643 442 4443211 11121 11 2222
Q ss_pred HHhcccccCCCccEEEEEecccccC--------CC-ChHHHHHHHHHHHHHHHhcCCCCceEEeeeeccceecccCCCCC
Q 043422 103 VKTHVVPFVDNVNIGYITVGNEVIP--------GT-NAQYVGQAINNILNSLNNYGITKQIKVTTVLPGTSLASSYPPSA 173 (344)
Q Consensus 103 v~~~v~~~~~~~~I~~I~VGNEvl~--------~~-~~~~Lv~am~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~PPs~ 173 (344)
++++ + ....+|.+|=|-.. .. ..++...+++.+|+.. .| +.+++.. +. .+|
T Consensus 241 m~~~-----~-~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~--~g----i~i~~~~----Iv-G~P--- 300 (414)
T TIGR01579 241 IASE-----K-RLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVR--PD----YAFGTDI----IV-GFP--- 300 (414)
T ss_pred HHhc-----C-ccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhC--CC----CeeeeeE----EE-ECC---
Confidence 3321 0 01234555544432 12 2566677777776632 22 4455432 21 244
Q ss_pred cccchhHHHHHHHHHHHHhhcCCceeeccCCcccc
Q 043422 174 GAFTNEAAAVLKDIAQNLWHRGFPIMINVYPYFAY 208 (344)
Q Consensus 174 g~F~~~~~~~~~~~l~fL~~~~d~~~vNiyPyf~~ 208 (344)
|. -...+...++|+.+. .+-.+++|||-.+
T Consensus 301 gE----T~ed~~~tl~~i~~~-~~~~~~~~~~sp~ 330 (414)
T TIGR01579 301 GE----SEEDFQETLRMVKEI-EFSHLHIFPYSAR 330 (414)
T ss_pred CC----CHHHHHHHHHHHHhC-CCCEEEeeecCCC
Confidence 11 123466778888764 3556778877554
No 52
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=34.24 E-value=3.7e+02 Score=24.59 Aligned_cols=107 Identities=9% Similarity=0.015 Sum_probs=65.6
Q ss_pred CCHHHHHHHHhcCCCCEEEEccCC-----------hHHHHHHhcCCCeEEEeeCcch---h--hhhhhhHHHHHHHHHhc
Q 043422 43 PPPEQVIDLYGRCQINFVRLFEPR-----------HEVLEALRGRPQLLSLGTKNEE---I--QSIASSQQASDEWVKTH 106 (344)
Q Consensus 43 ps~~~v~~llk~~~~~~VRiY~~d-----------~~vL~A~~~~gi~v~lGv~~~~---~--~~la~~~~~a~~wv~~~ 106 (344)
|+. ...+.+|+.|.+.|=.|=++ +.=++.+...|++++.= ++.. . ...+.-...|.+-++.+
T Consensus 21 ~t~-~~a~~l~~~gy~~vgrYls~~~~~~~~k~lt~~e~~~i~~~Gl~~~pI-yq~~~~~~~~~~~~~G~~dA~~A~~~A 98 (212)
T cd06418 21 PTD-ARAQTLKAAGYGIVGRYLTGSPGGCLSKNLTATELETITAAGLKVFPI-YQGGGYSLDYFGYEQGVKDARDAVAAA 98 (212)
T ss_pred CCH-HHHHHHHHCCCeEEEEEcCCCCCCCCCCCCCHHHHHHHHHCCCEEEEE-EECCCccccccCHHHHHHHHHHHHHHH
Confidence 444 55677788888776666322 23467778899987542 3211 1 11112222333333333
Q ss_pred ccccCCCccEEEEEecccccCCCChHHHHHHHHHHHHHHHhcCCC
Q 043422 107 VVPFVDNVNIGYITVGNEVIPGTNAQYVGQAINNILNSLNNYGIT 151 (344)
Q Consensus 107 v~~~~~~~~I~~I~VGNEvl~~~~~~~Lv~am~~v~~aL~~~gl~ 151 (344)
..--.|...+.++.|-......+....++|+++-+.++|...||.
T Consensus 99 ~~lG~p~gs~IYfavD~d~~~~~~~~~v~~Y~~a~~~~l~~~gY~ 143 (212)
T cd06418 99 RALGFPPGTIIYFAVDFDALDDEVTEVILPYFRGWNDALHEAGYR 143 (212)
T ss_pred HHcCCCCCCEEEEEeecCCCcchhHHHHHHHHHHHHHHHHhcCCc
Confidence 333346666778888766654455789999999999999999873
No 53
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=34.19 E-value=54 Score=33.21 Aligned_cols=34 Identities=12% Similarity=0.150 Sum_probs=30.9
Q ss_pred HHHHHhcCCCCEEEEccCChHHHHHHhcCCCeEE
Q 043422 48 VIDLYGRCQINFVRLFEPRHEVLEALRGRPQLLS 81 (344)
Q Consensus 48 v~~llk~~~~~~VRiY~~d~~vL~A~~~~gi~v~ 81 (344)
.+++|+..|+++||+.+.++.-..++.+.||+|.
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~ 371 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVT 371 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEE
Confidence 3678899999999999999988889999999997
No 54
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=33.96 E-value=53 Score=34.64 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=32.6
Q ss_pred HHHHhcCCCCEEEEccCChHHHHHHhcCCCeEEEeeC
Q 043422 49 IDLYGRCQINFVRLFEPRHEVLEALRGRPQLLSLGTK 85 (344)
Q Consensus 49 ~~llk~~~~~~VRiY~~d~~vL~A~~~~gi~v~lGv~ 85 (344)
+++|+..|+++||+...+|.-+.++++.||+|.==++
T Consensus 343 AQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 343 AQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6789999999999999999999999999999874443
No 55
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=33.81 E-value=1.7e+02 Score=23.57 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=25.2
Q ss_pred ceeeEeecCCCCCCCCHHHHHHHHhcCCCCEEEEc
Q 043422 29 NVIGVNYGLNGDNLPPPEQVIDLYGRCQINFVRLF 63 (344)
Q Consensus 29 ~~~GvnYg~~~~n~ps~~~v~~llk~~~~~~VRiY 63 (344)
..+-|.-...+.+.++.+++.+.|+..||..-++-
T Consensus 32 pAvqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i~ 66 (101)
T PF13721_consen 32 PAVQISASSAGVQLPDAFQVEQALKAAGIAVKSIE 66 (101)
T ss_pred CcEEEecCCCCccCChHHHHHHHHHHCCCCcceEE
Confidence 34566666666678888899999999988654443
No 56
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=33.63 E-value=86 Score=30.84 Aligned_cols=76 Identities=13% Similarity=0.199 Sum_probs=51.5
Q ss_pred hHHHHHHhcCCCeEEEeeCcchhhhhhhhHHHHHHHHHhcccccCCCccEEEEEecccccCCCChHHHHHHHHHHHHHHH
Q 043422 67 HEVLEALRGRPQLLSLGTKNEEIQSIASSQQASDEWVKTHVVPFVDNVNIGYITVGNEVIPGTNAQYVGQAINNILNSLN 146 (344)
Q Consensus 67 ~~vL~A~~~~gi~v~lGv~~~~~~~la~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~Lv~am~~v~~aL~ 146 (344)
..||+++..+|-.+.+|=.- .+. -.++.|..|+...+..++ +.|.+|+--|.-..+. +-++|+
T Consensus 175 m~VLkp~idsGkik~~Ge~~--~d~--W~ps~Aq~~men~lta~~--~~vdaVvA~nDgtagG-----------aI~aL~ 237 (341)
T COG4213 175 MKVLKPLIDSGKIKVVGEQW--TDG--WLPSNAQQIMENLLTANY--NDIDAVVAPNDGTAGG-----------AIAALK 237 (341)
T ss_pred HHHHHHHhhCCceEEeeecc--ccc--cCHHHHHHHHHHHHhccc--CceeEEEcCCCchhHH-----------HHHHHH
Confidence 47999998887655566432 122 345677888877777765 4599988887744322 235788
Q ss_pred hcCCCCceEEeee
Q 043422 147 NYGITKQIKVTTV 159 (344)
Q Consensus 147 ~~gl~~~I~VsT~ 159 (344)
+.||+++++||--
T Consensus 238 a~Gl~g~vpVsGQ 250 (341)
T COG4213 238 AQGLAGKVPVSGQ 250 (341)
T ss_pred hcccCCCCcccCc
Confidence 8999999987643
No 57
>CHL00041 rps11 ribosomal protein S11
Probab=33.43 E-value=89 Score=25.94 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=26.7
Q ss_pred HHHHHHhcCCCCEEEEc--cCC---hHHHHHHhcCCCeEE
Q 043422 47 QVIDLYGRCQINFVRLF--EPR---HEVLEALRGRPQLLS 81 (344)
Q Consensus 47 ~v~~llk~~~~~~VRiY--~~d---~~vL~A~~~~gi~v~ 81 (344)
++.+.++..|++.|+++ +.. +.++++++..|++|.
T Consensus 64 ~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 64 NAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 44566677899988887 333 578999999999874
No 58
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=33.26 E-value=72 Score=26.12 Aligned_cols=36 Identities=17% Similarity=0.079 Sum_probs=27.4
Q ss_pred HHHHHHhcCCCCEEEEc--cCC---hHHHHHHhcCCCeEEE
Q 043422 47 QVIDLYGRCQINFVRLF--EPR---HEVLEALRGRPQLLSL 82 (344)
Q Consensus 47 ~v~~llk~~~~~~VRiY--~~d---~~vL~A~~~~gi~v~l 82 (344)
.+.+.++..|++.|+++ +.. ..++++++.+|++|..
T Consensus 51 ~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 51 KIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 34566778899998888 443 4789999999998654
No 59
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=33.11 E-value=1.8e+02 Score=29.12 Aligned_cols=133 Identities=19% Similarity=0.330 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEeeeeccceecccCCCCCccc--chhHHHHHHHHHHHHhhcCCceeeccCCcccc
Q 043422 131 AQYVGQAINNILNSLNNYGITKQIKVTTVLPGTSLASSYPPSAGAF--TNEAAAVLKDIAQNLWHRGFPIMINVYPYFAY 208 (344)
Q Consensus 131 ~~~Lv~am~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~PPs~g~F--~~~~~~~~~~~l~fL~~~~d~~~vNiyPyf~~ 208 (344)
.+++...+++.|+. .||+.+-..-.-+...+ +.| .++.-|-++.+++.|.+.+=-++++++|+...
T Consensus 42 ~~~v~~~i~~~~~~--------~iP~d~~~iD~~~~~~~----~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~ 109 (441)
T PF01055_consen 42 QDEVREVIDRYRSN--------GIPLDVIWIDDDYQDGY----GDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSN 109 (441)
T ss_dssp HHHHHHHHHHHHHT--------T--EEEEEE-GGGSBTT----BTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEET
T ss_pred HHHHHHHHHHHHHc--------CCCccceeccccccccc----cccccccccccchHHHHHhHhhCCcEEEEEeecccCC
Confidence 45566666666663 47776654322232211 222 22222456888999999999999999998774
Q ss_pred cCCCCCcCcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHcCC----CCccEEEeeccCCCCCCCCCCCHHHHHH
Q 043422 209 ASDPSHISLDYALFQSKDPVVRDGPYLYYNLFDAMVDAFHSALEKIDV----PNVTLAISESGWPSAGNEPYTSIENAQK 284 (344)
Q Consensus 209 ~~~~~~i~l~~A~f~~~~~~~~~~~~~y~n~fda~~da~~~al~~~g~----~~~~vvVtETGWPS~G~~~~as~~na~~ 284 (344)
... +|. .++. +.+.|+ ++-...+++. ||-.+.-..-+-.+++.
T Consensus 110 ~~~------~~~------------------~~~~--------~~~~~~~v~~~~g~~~~~~~-w~g~~~~~Dftnp~a~~ 156 (441)
T PF01055_consen 110 DSP------DYE------------------NYDE--------AKEKGYLVKNPDGSPYIGRV-WPGKGGFIDFTNPEARD 156 (441)
T ss_dssp TTT------B-H------------------HHHH--------HHHTT-BEBCTTSSB-EEEE-TTEEEEEB-TTSHHHHH
T ss_pred CCC------cch------------------hhhh--------HhhcCceeecccCCcccccc-cCCcccccCCCChhHHH
Confidence 311 111 1221 111221 2235677777 98544423455566888
Q ss_pred HHHHHHHHHhcCCCCCCCCCCcccEEEEEeec
Q 043422 285 YNKNLMDHVLGGKGTPRRPGQTFDTFLFEMFN 316 (344)
Q Consensus 285 y~~~li~~~~~~~Gtp~rpg~~~~~y~F~~fD 316 (344)
++++.++.+.+.. +++.++..+=+
T Consensus 157 w~~~~~~~~~~~~--------Gvdg~w~D~~E 180 (441)
T PF01055_consen 157 WWKEQLKELLDDY--------GVDGWWLDFGE 180 (441)
T ss_dssp HHHHHHHHHHTTS--------T-SEEEEESTT
T ss_pred HHHHHHHHHHhcc--------CCceEEeecCC
Confidence 8877777775321 47888887633
No 60
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=33.09 E-value=56 Score=33.63 Aligned_cols=37 Identities=11% Similarity=0.101 Sum_probs=32.0
Q ss_pred HHHHhcCCCCEEEEccCChHHHHHHhcCCCeEEEeeC
Q 043422 49 IDLYGRCQINFVRLFEPRHEVLEALRGRPQLLSLGTK 85 (344)
Q Consensus 49 ~~llk~~~~~~VRiY~~d~~vL~A~~~~gi~v~lGv~ 85 (344)
+++|+..|+++||+.+.++.-+.++.+.||+|.==++
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 6789999999999999999888999999999973333
No 61
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=33.01 E-value=58 Score=33.65 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCCCEEE-------Ecc------CC-------hHHHHHHhcCCCeEEEeeCcchhh
Q 043422 45 PEQVIDLYGRCQINFVR-------LFE------PR-------HEVLEALRGRPQLLSLGTKNEEIQ 90 (344)
Q Consensus 45 ~~~v~~llk~~~~~~VR-------iY~------~d-------~~vL~A~~~~gi~v~lGv~~~~~~ 90 (344)
-+|-++|+|+.|++..| |+- .+ .+++.++.+.||+.+|.++.-+++
T Consensus 71 y~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP 136 (477)
T PRK15014 71 YKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMP 136 (477)
T ss_pred cHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCC
Confidence 45778899988776665 441 13 268999999999999999654443
No 62
>PLN00196 alpha-amylase; Provisional
Probab=32.99 E-value=1e+02 Score=31.42 Aligned_cols=55 Identities=20% Similarity=0.229 Sum_probs=33.2
Q ss_pred eeEeecCCCCC---CCCHHHHHHHHhcCCCCEE-----------------EEccCC----------hHHHHHHhcCCCeE
Q 043422 31 IGVNYGLNGDN---LPPPEQVIDLYGRCQINFV-----------------RLFEPR----------HEVLEALRGRPQLL 80 (344)
Q Consensus 31 ~GvnYg~~~~n---~ps~~~v~~llk~~~~~~V-----------------RiY~~d----------~~vL~A~~~~gi~v 80 (344)
-|+++.....+ +.--.+-+.-|+..||+.| +.|+.| .++++++.+.||+|
T Consensus 29 Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkV 108 (428)
T PLN00196 29 QGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQV 108 (428)
T ss_pred EeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEE
Confidence 48886542221 1112233456677787776 344443 25678888999999
Q ss_pred EEeeC
Q 043422 81 SLGTK 85 (344)
Q Consensus 81 ~lGv~ 85 (344)
++-+=
T Consensus 109 ilDvV 113 (428)
T PLN00196 109 IADIV 113 (428)
T ss_pred EEEEC
Confidence 99763
No 63
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=32.94 E-value=85 Score=26.85 Aligned_cols=36 Identities=17% Similarity=0.116 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCCEEEEc--c--------CC---hHHHHHHhcCCCeEE
Q 043422 46 EQVIDLYGRCQINFVRLF--E--------PR---HEVLEALRGRPQLLS 81 (344)
Q Consensus 46 ~~v~~llk~~~~~~VRiY--~--------~d---~~vL~A~~~~gi~v~ 81 (344)
+++.+.++..|++.|+++ + +. +.+|++++..|++|.
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~ 108 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 108 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEE
Confidence 445667778999988887 4 33 479999999999974
No 64
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=32.86 E-value=1e+02 Score=28.59 Aligned_cols=81 Identities=15% Similarity=0.091 Sum_probs=43.9
Q ss_pred HHHHHHhcCCCeEEEeeCcchh---hhhhhhHHHHHHHHHhcccccCCCccEEEEEecccccCCCChHHHHHHHHHHHHH
Q 043422 68 EVLEALRGRPQLLSLGTKNEEI---QSIASSQQASDEWVKTHVVPFVDNVNIGYITVGNEVIPGTNAQYVGQAINNILNS 144 (344)
Q Consensus 68 ~vL~A~~~~gi~v~lGv~~~~~---~~la~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~Lv~am~~v~~a 144 (344)
..+++++..|+||++.|..... ..+.+++.....+++ ++..+.....+.+|-+-=|-.... ......-++++|++
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~-~lv~~~~~~~~DGIdiDwE~~~~~-~~~~~~fv~~Lr~~ 127 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVD-KIINYVVSYNLDGIDVDLEGPDVT-FGDYLVFIRALYAA 127 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHH-HHHHHHHHhCCCceeEEeeccCcc-HhHHHHHHHHHHHH
Confidence 4566777789999988765321 223334333333322 222221111244454444443211 35677889999999
Q ss_pred HHhcCC
Q 043422 145 LNNYGI 150 (344)
Q Consensus 145 L~~~gl 150 (344)
|++.|+
T Consensus 128 l~~~~~ 133 (253)
T cd06545 128 LKKEGK 133 (253)
T ss_pred HhhcCc
Confidence 987664
No 65
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=32.84 E-value=1.3e+02 Score=30.72 Aligned_cols=103 Identities=13% Similarity=0.133 Sum_probs=52.4
Q ss_pred HHHHHHHhcCCCCEEEEc--cCC-------------h---HHHHHHhcCCC-----eEEEeeCcchhhhhhhhHHHHHHH
Q 043422 46 EQVIDLYGRCQINFVRLF--EPR-------------H---EVLEALRGRPQ-----LLSLGTKNEEIQSIASSQQASDEW 102 (344)
Q Consensus 46 ~~v~~llk~~~~~~VRiY--~~d-------------~---~vL~A~~~~gi-----~v~lGv~~~~~~~la~~~~~a~~w 102 (344)
++.++.|+..|+++|-+= +.+ . +.++.++..|+ .+|.|+|.+...++....+.+...
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l 231 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIAL 231 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHhc
Confidence 466778887788766432 122 1 23444455565 368899988777766554443321
Q ss_pred HHhccccc----CCCccEEEEEecccccCCCChHHHHHHHHHHHHHHHhcCC
Q 043422 103 VKTHVVPF----VDNVNIGYITVGNEVIPGTNAQYVGQAINNILNSLNNYGI 150 (344)
Q Consensus 103 v~~~v~~~----~~~~~I~~I~VGNEvl~~~~~~~Lv~am~~v~~aL~~~gl 150 (344)
--+.|.-| .|...-..-.+|.+.+. .....+.-++.+.+.|.++||
T Consensus 232 ~p~~i~~y~l~~~p~~~~~~~~~~~~~lp--~~~~~~~~~~~~~~~L~~~Gy 281 (453)
T PRK13347 232 SPDRIAVFGYAHVPSRRKNQRLIDEAALP--DAEERLRQARAVADRLLAAGY 281 (453)
T ss_pred CCCEEEEeccccccchhhHHhcCCccCCc--CHHHHHHHHHHHHHHHHHCCC
Confidence 00111111 00000000001222221 134566777888999999998
No 66
>PF12249 AftA_C: Arabinofuranosyltransferase A C terminal; InterPro: IPR020959 The arabinofuranosyltransferase enzyme AftA is involved in cell wall arabinan biosynthesis in bacteria []. It catalyses the addition of the first key arabinofuranosyl residue from the sugar donor beta-D-arabinofuranosyl-1-monophosphoryldecaprenol to the galactan domain of the cell wall, thus priming the galactan for further elaboration by the arabinofuranosyltransferases. As this enzyme is important for cell growth and is found in some important pathogens, such as Mycobacterium tuberculosis, it represents a potential target for the devlopment of new antibacterial drugs. This entry represents the C-terminal domain of AftA.; GO: 0016757 transferase activity, transferring glycosyl groups, 0044038 cell wall macromolecule biosynthetic process, 0005886 plasma membrane, 0016021 integral to membrane
Probab=32.48 E-value=77 Score=28.39 Aligned_cols=44 Identities=18% Similarity=0.426 Sum_probs=24.2
Q ss_pred ccCCCCCcccchhHHHHHHHHH-----HHHhhcCCceeeccCCcccccC
Q 043422 167 SSYPPSAGAFTNEAAAVLKDIA-----QNLWHRGFPIMINVYPYFAYAS 210 (344)
Q Consensus 167 ~s~PPs~g~F~~~~~~~~~~~l-----~fL~~~~d~~~vNiyPyf~~~~ 210 (344)
+.+||.++.+..++...|..+. +-+.-+.|+-.+-.||||..+.
T Consensus 25 Dr~P~~a~~yY~~id~~I~~~tG~~~~~tVvLT~d~~FlsyyPY~gFQa 73 (178)
T PF12249_consen 25 DRRPPDAERYYPEIDAAIREQTGRPPDDTVVLTDDYSFLSYYPYWGFQA 73 (178)
T ss_pred ccCCCchHHhHHHHHHHHHHhcCCCCCCeEEEeccccceEecccccccc
Confidence 3466666666555443333321 1111244566678899999863
No 67
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=32.22 E-value=79 Score=32.65 Aligned_cols=46 Identities=13% Similarity=0.227 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCCCEEE-------Ecc------CC-------hHHHHHHhcCCCeEEEeeCcchhh
Q 043422 45 PEQVIDLYGRCQINFVR-------LFE------PR-------HEVLEALRGRPQLLSLGTKNEEIQ 90 (344)
Q Consensus 45 ~~~v~~llk~~~~~~VR-------iY~------~d-------~~vL~A~~~~gi~v~lGv~~~~~~ 90 (344)
-+|-++|||..|++.-| |+= .+ .+++.+|.+.||+-+|.++.-+++
T Consensus 69 y~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP 134 (476)
T PRK09589 69 YKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMP 134 (476)
T ss_pred hHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCC
Confidence 35678899988877665 441 23 268999999999999999875554
No 68
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=31.23 E-value=96 Score=26.06 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCCCEEEEccCChHHHHHHhcCCCeEEEeeC
Q 043422 46 EQVIDLYGRCQINFVRLFEPRHEVLEALRGRPQLLSLGTK 85 (344)
Q Consensus 46 ~~v~~llk~~~~~~VRiY~~d~~vL~A~~~~gi~v~lGv~ 85 (344)
..+.++|+.+|++.|=+...-+..+..|++.||+|+.+-.
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 3578999999999998888889999999999999999977
No 69
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=30.88 E-value=1e+02 Score=26.08 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCCCEEEEccC---------------------C--hHHHHHHhcCCCeEEEeeCcc
Q 043422 45 PEQVIDLYGRCQINFVRLFEP---------------------R--HEVLEALRGRPQLLSLGTKNE 87 (344)
Q Consensus 45 ~~~v~~llk~~~~~~VRiY~~---------------------d--~~vL~A~~~~gi~v~lGv~~~ 87 (344)
++++++.||..+++.|-+|.- | .++++|+++.||+|++=+-..
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 566777777766666666532 2 367899999999998776554
No 70
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=30.41 E-value=90 Score=32.28 Aligned_cols=46 Identities=15% Similarity=0.160 Sum_probs=33.6
Q ss_pred HHHHHHHhcCCCCEEEE-------cc------CC-------hHHHHHHhcCCCeEEEeeCcchhhh
Q 043422 46 EQVIDLYGRCQINFVRL-------FE------PR-------HEVLEALRGRPQLLSLGTKNEEIQS 91 (344)
Q Consensus 46 ~~v~~llk~~~~~~VRi-------Y~------~d-------~~vL~A~~~~gi~v~lGv~~~~~~~ 91 (344)
+|-+++++..|++..|+ +- .+ .+++.++.+.||+.+|.+..-+++.
T Consensus 74 ~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~ 139 (474)
T PRK09852 74 KEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPM 139 (474)
T ss_pred HHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCH
Confidence 56678998887766654 31 13 2688999999999999998755543
No 71
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.28 E-value=1.1e+02 Score=28.27 Aligned_cols=82 Identities=13% Similarity=0.227 Sum_probs=50.3
Q ss_pred CceeeEeecCCCCCCCCHHHHHHHHhcCCCCEEEEccCC-----hHHHHHHhcCCCeEEEeeCcchhhhhhhhHHHHHHH
Q 043422 28 ANVIGVNYGLNGDNLPPPEQVIDLYGRCQINFVRLFEPR-----HEVLEALRGRPQLLSLGTKNEEIQSIASSQQASDEW 102 (344)
Q Consensus 28 ~~~~GvnYg~~~~n~ps~~~v~~llk~~~~~~VRiY~~d-----~~vL~A~~~~gi~v~lGv~~~~~~~la~~~~~a~~w 102 (344)
-..+||.|-...-.++. .--.+++||+- ..+.++....-+.++|..-.....++. ....|
T Consensus 42 ~sTiGIDFk~kti~l~g-----------~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfe----ni~~W 106 (207)
T KOG0078|consen 42 ISTIGIDFKIKTIELDG-----------KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFE----NIRNW 106 (207)
T ss_pred cceEEEEEEEEEEEeCC-----------eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHH----HHHHH
Confidence 34577777554333333 12367888874 367777766556667766554444543 34557
Q ss_pred HHhcccccCCCccEEEEEeccccc
Q 043422 103 VKTHVVPFVDNVNIGYITVGNEVI 126 (344)
Q Consensus 103 v~~~v~~~~~~~~I~~I~VGNEvl 126 (344)
+ ++|..+.++ .+.-+.|||-.=
T Consensus 107 ~-~~I~e~a~~-~v~~~LvGNK~D 128 (207)
T KOG0078|consen 107 I-KNIDEHASD-DVVKILVGNKCD 128 (207)
T ss_pred H-HHHHhhCCC-CCcEEEeecccc
Confidence 6 456666554 688899999774
No 72
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=29.81 E-value=1.4e+02 Score=24.39 Aligned_cols=46 Identities=20% Similarity=0.396 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcCCCCccEEEeeccCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Q 043422 244 VDAFHSALEKIDVPNVTLAISESGWPSAGNEPYTSIENAQKYNKNLMDHVLGGKGTPRRP 303 (344)
Q Consensus 244 ~da~~~al~~~g~~~~~vvVtETGWPS~G~~~~as~~na~~y~~~li~~~~~~~Gtp~rp 303 (344)
-|+++.-|.+.+ + |..|..+-+|.+.|-..+++.+..+ +.+||.|.
T Consensus 39 KD~I~q~m~~F~--d----------p~~G~pAF~s~~QQ~~mlq~~l~k~--~~~t~L~E 84 (120)
T PRK15321 39 KDSIYQEMNAFK--D----------PNSGDSAFVSFEQQTAMLQNMLAKV--EPGTHLYE 84 (120)
T ss_pred HHHHHHHHHHhC--C----------CCCCCcccccHHHHHHHHHHHHHhc--CCCchHHH
Confidence 477777776543 3 7777777899999999999988877 56677664
No 73
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.27 E-value=6.4e+02 Score=25.89 Aligned_cols=132 Identities=14% Similarity=0.155 Sum_probs=71.3
Q ss_pred eeeEeecCCCCCCCC----HHHHHHHH-hcCCCCEEEEccCC-----hHHHHHHhcC-CCeEEEeeCcchhhhhhhhHHH
Q 043422 30 VIGVNYGLNGDNLPP----PEQVIDLY-GRCQINFVRLFEPR-----HEVLEALRGR-PQLLSLGTKNEEIQSIASSQQA 98 (344)
Q Consensus 30 ~~GvnYg~~~~n~ps----~~~v~~ll-k~~~~~~VRiY~~d-----~~vL~A~~~~-gi~v~lGv~~~~~~~la~~~~~ 98 (344)
-+|.|-+.||.|++. -.+.++.+ +-.|+.+||+=..+ .+++.+++.+ .+-=.|-+|.+ +-...
T Consensus 195 L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQ---sGsd~--- 268 (437)
T COG0621 195 LTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQ---SGSDR--- 268 (437)
T ss_pred EEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCccc---cCCHH---
Confidence 368888888888753 34444433 33578899987665 3677887764 33224444431 11100
Q ss_pred HHHHHHhcccccCCCccEEEEEecccccCCCChHHHHHHHHHHHHHHHhcCCCCceEEeeeeccceecccCCCCCcccch
Q 043422 99 SDEWVKTHVVPFVDNVNIGYITVGNEVIPGTNAQYVGQAINNILNSLNNYGITKQIKVTTVLPGTSLASSYPPSAGAFTN 178 (344)
Q Consensus 99 a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~Lv~am~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~PPs~g~F~~ 178 (344)
+-+.+.. +-...+.+.-++.+|++.....++.+|-|+ || |.=.+
T Consensus 269 ----ILk~M~R------------------~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVG-----------FP---gETee 312 (437)
T COG0621 269 ----ILKRMKR------------------GYTVEEYLEIIEKLRAARPDIAISTDIIVG-----------FP---GETEE 312 (437)
T ss_pred ----HHHHhCC------------------CcCHHHHHHHHHHHHHhCCCceEeccEEEE-----------CC---CCCHH
Confidence 0011111 112567778888888876544443333232 55 22222
Q ss_pred hHHHHHHHHHHHHhhcCCceeeccCCcccc
Q 043422 179 EAAAVLKDIAQNLWHRGFPIMINVYPYFAY 208 (344)
Q Consensus 179 ~~~~~~~~~l~fL~~~~d~~~vNiyPyf~~ 208 (344)
| ....++|+.+ .-|=.+|+++|=..
T Consensus 313 d----Fe~tl~lv~e-~~fd~~~~F~YSpR 337 (437)
T COG0621 313 D----FEETLDLVEE-VRFDRLHVFKYSPR 337 (437)
T ss_pred H----HHHHHHHHHH-hCCCEEeeeecCCC
Confidence 2 3445665543 45778899987543
No 74
>PRK05309 30S ribosomal protein S11; Validated
Probab=28.95 E-value=1.2e+02 Score=25.73 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCCEEEEc--cCC---hHHHHHHhcCCCeEE
Q 043422 46 EQVIDLYGRCQINFVRLF--EPR---HEVLEALRGRPQLLS 81 (344)
Q Consensus 46 ~~v~~llk~~~~~~VRiY--~~d---~~vL~A~~~~gi~v~ 81 (344)
+.+.+.++..|++.|+++ +.. ..+|.++...|++|.
T Consensus 67 ~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~ 107 (128)
T PRK05309 67 EDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVT 107 (128)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 345566778899999998 343 578999999999864
No 75
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.06 E-value=4.4e+02 Score=23.60 Aligned_cols=101 Identities=12% Similarity=0.108 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCCCCEEEEccCC---------hHHHHHHhcCCCeEEE--eeCcchhhhhhhhHHHHHHHHHhcccccCCC
Q 043422 45 PEQVIDLYGRCQINFVRLFEPR---------HEVLEALRGRPQLLSL--GTKNEEIQSIASSQQASDEWVKTHVVPFVDN 113 (344)
Q Consensus 45 ~~~v~~llk~~~~~~VRiY~~d---------~~vL~A~~~~gi~v~l--Gv~~~~~~~la~~~~~a~~wv~~~v~~~~~~ 113 (344)
..++++.|..+|.++|=+.+.. .....+++..|+++.. ..+.....+.....+.+.+|++++ +
T Consensus 97 g~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~- 170 (265)
T cd01543 97 GRMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL-----P- 170 (265)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC-----C-
Confidence 3455666666777776655432 1234566677877621 111111112222234456666542 1
Q ss_pred ccEEEEEecccccCCCChHHHHHHHHHHHHHHHhcCC--CCceEEeeeeccc
Q 043422 114 VNIGYITVGNEVIPGTNAQYVGQAINNILNSLNNYGI--TKQIKVTTVLPGT 163 (344)
Q Consensus 114 ~~I~~I~VGNEvl~~~~~~~Lv~am~~v~~aL~~~gl--~~~I~VsT~~~~~ 163 (344)
.+++|...|+.+. .. +.++|++.|+ .++|.|.+-+...
T Consensus 171 -~~~ai~~~~d~~a-------~g----~~~~l~~~g~~vp~di~vigfd~~~ 210 (265)
T cd01543 171 -KPVGIFACTDARA-------RQ----LLEACRRAGIAVPEEVAVLGVDNDE 210 (265)
T ss_pred -CCcEEEecChHHH-------HH----HHHHHHHhCCCCCCceEEEeeCCch
Confidence 2567777776642 12 2344555565 3567766665443
No 76
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=27.64 E-value=1.8e+02 Score=24.48 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=31.8
Q ss_pred CCHHHHHHHHhcCCCCEEEEccCC-------hHHHHHHhcC---CCeEEEe--eCcc
Q 043422 43 PPPEQVIDLYGRCQINFVRLFEPR-------HEVLEALRGR---PQLLSLG--TKNE 87 (344)
Q Consensus 43 ps~~~v~~llk~~~~~~VRiY~~d-------~~vL~A~~~~---gi~v~lG--v~~~ 87 (344)
-|++++++-.++.+.+.|=+-+.+ +.++++++.. .++|++| ++.+
T Consensus 40 ~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~ 96 (132)
T TIGR00640 40 QTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQ 96 (132)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChH
Confidence 477888887777777777776654 3677777765 4688888 6543
No 77
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=27.62 E-value=2e+02 Score=27.29 Aligned_cols=63 Identities=17% Similarity=0.314 Sum_probs=34.2
Q ss_pred EEEEEecccccCCCChHHHHHHHHHHHHHHHhcCCCCceE-EeeeeccceecccCCCCCcccchhHHHHHHHHHHHHhhc
Q 043422 116 IGYITVGNEVIPGTNAQYVGQAINNILNSLNNYGITKQIK-VTTVLPGTSLASSYPPSAGAFTNEAAAVLKDIAQNLWHR 194 (344)
Q Consensus 116 I~~I~VGNEvl~~~~~~~Lv~am~~v~~aL~~~gl~~~I~-VsT~~~~~~l~~s~PPs~g~F~~~~~~~~~~~l~fL~~~ 194 (344)
..-|+||+|+|.|+....=.++ +-+.|...|++ ++ ++|. .+ + -.-+...++.+.+.
T Consensus 4 a~iI~vG~ElL~G~ivdtNa~~---la~~L~~~G~~--v~~~~~V------gD-----------~-~~~I~~~l~~a~~r 60 (255)
T COG1058 4 AEIIAVGDELLSGRIVDTNAAF---LADELTELGVD--LARITTV------GD-----------N-PDRIVEALREASER 60 (255)
T ss_pred EEEEEEccceecCceecchHHH---HHHHHHhcCce--EEEEEec------CC-----------C-HHHHHHHHHHHHhC
Confidence 5569999999997542222222 22456666763 32 3322 11 1 12355666666666
Q ss_pred CCceeec
Q 043422 195 GFPIMIN 201 (344)
Q Consensus 195 ~d~~~vN 201 (344)
.|++.++
T Consensus 61 ~D~vI~t 67 (255)
T COG1058 61 ADVVITT 67 (255)
T ss_pred CCEEEEC
Confidence 6766543
No 78
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=27.54 E-value=98 Score=26.05 Aligned_cols=44 Identities=7% Similarity=0.152 Sum_probs=36.1
Q ss_pred CCHHHHHHHHhcCCCCEEEEccCC-----hHHHHHHhcCCCeEEEeeCc
Q 043422 43 PPPEQVIDLYGRCQINFVRLFEPR-----HEVLEALRGRPQLLSLGTKN 86 (344)
Q Consensus 43 ps~~~v~~llk~~~~~~VRiY~~d-----~~vL~A~~~~gi~v~lGv~~ 86 (344)
.+++++++..+..|++.|=+=|-+ +.-...++..||++++|+-.
T Consensus 16 ~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 16 DSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp SSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 488999999999999988877664 35566667799999999986
No 79
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=26.38 E-value=1.2e+02 Score=31.21 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCCCCEEEE-------cc--C---C-------hHHHHHHhcCCCeEEEeeCcchhhh
Q 043422 45 PEQVIDLYGRCQINFVRL-------FE--P---R-------HEVLEALRGRPQLLSLGTKNEEIQS 91 (344)
Q Consensus 45 ~~~v~~llk~~~~~~VRi-------Y~--~---d-------~~vL~A~~~~gi~v~lGv~~~~~~~ 91 (344)
-+|-++|++..|++.-|+ +- . + .+++.+|.+.||+-+|.+..-+++.
T Consensus 55 y~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 120 (467)
T TIGR01233 55 YPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPE 120 (467)
T ss_pred HHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcH
Confidence 356788999888766654 41 1 2 3688999999999999998755543
No 80
>cd06156 eu_AANH_C_2 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the second of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=25.95 E-value=1.2e+02 Score=24.90 Aligned_cols=29 Identities=3% Similarity=0.054 Sum_probs=23.8
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCCCce-EEe
Q 043422 128 GTNAQYVGQAINNILNSLNNYGITKQI-KVT 157 (344)
Q Consensus 128 ~~~~~~Lv~am~~v~~aL~~~gl~~~I-~Vs 157 (344)
+++..+.-.+++|+++.|+++|. .+| |++
T Consensus 29 ~~~~~Q~~qal~Ni~~vL~~aG~-~dVvk~~ 58 (118)
T cd06156 29 GGITLQAVLSLQHLERVAKAMNV-QWVLAAV 58 (118)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCC-CCEEEEE
Confidence 45678999999999999999999 554 544
No 81
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=25.58 E-value=2.4e+02 Score=26.93 Aligned_cols=78 Identities=14% Similarity=0.237 Sum_probs=41.6
Q ss_pred HHHHhc--CCCeEEEeeCc----chhhhhhhhHHHHHHHHHhcccccCCCccEEEEEecccccCC--CChHHHHHHHHHH
Q 043422 70 LEALRG--RPQLLSLGTKN----EEIQSIASSQQASDEWVKTHVVPFVDNVNIGYITVGNEVIPG--TNAQYVGQAINNI 141 (344)
Q Consensus 70 L~A~~~--~gi~v~lGv~~----~~~~~la~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~--~~~~~Lv~am~~v 141 (344)
+.+++. .++||++.|-. +....+.++.+.....+ +++..+.......+|-+==|-... +....++.-|+++
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi-~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~l 135 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFI-DSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKEL 135 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHH-HHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHH
Confidence 455555 48999988754 22334444432222222 222222111235566664444332 2345788899999
Q ss_pred HHHHHhc
Q 043422 142 LNSLNNY 148 (344)
Q Consensus 142 ~~aL~~~ 148 (344)
|+.|.+.
T Consensus 136 r~~l~~~ 142 (334)
T smart00636 136 REALDKE 142 (334)
T ss_pred HHHHHHh
Confidence 9999764
No 82
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=25.29 E-value=2.5e+02 Score=26.62 Aligned_cols=117 Identities=11% Similarity=0.103 Sum_probs=56.9
Q ss_pred hcCCCeEEEeeCcc-----hhhhhhhhHHHHHHHHHhcccccCCCccEEEEEecccccCCC----ChHHHHHHHHHHHHH
Q 043422 74 RGRPQLLSLGTKNE-----EIQSIASSQQASDEWVKTHVVPFVDNVNIGYITVGNEVIPGT----NAQYVGQAINNILNS 144 (344)
Q Consensus 74 ~~~gi~v~lGv~~~-----~~~~la~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~----~~~~Lv~am~~v~~a 144 (344)
++.|+||++.|-.. ....+..+.+.... +.++|..+...-.+.+|-+==|-.... ....+..-|+.+|++
T Consensus 70 ~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~-f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~ 148 (343)
T PF00704_consen 70 KNPGVKVLLSIGGWGMSSDGFSQLLSNPAKRQN-FINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKA 148 (343)
T ss_dssp HHTT-EEEEEEEETTSSHHHHHHHHHSHHHHHH-HHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHH
T ss_pred hccCceEEEEeccccccccccccccccHHHHHH-HHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhh
Confidence 35699997776543 23334433321111 122222221112366666644554322 367888999999999
Q ss_pred HHhcCCC-CceEEeeeeccceecccCCCCCcccchhHHHHHHHHHHHHhhcCCceeeccCCccc
Q 043422 145 LNNYGIT-KQIKVTTVLPGTSLASSYPPSAGAFTNEAAAVLKDIAQNLWHRGFPIMINVYPYFA 207 (344)
Q Consensus 145 L~~~gl~-~~I~VsT~~~~~~l~~s~PPs~g~F~~~~~~~~~~~l~fL~~~~d~~~vNiyPyf~ 207 (344)
|++.+-. ....+|.+... +.- ....+ -+.-+.+..|++.+-.|-|..
T Consensus 149 l~~~~~~~~~~~ls~a~p~---------~~~-----~~~~~--~~~~l~~~vD~v~~m~yD~~~ 196 (343)
T PF00704_consen 149 LKRANRSGKGYILSVAVPP---------SPD-----YYDKY--DYKELAQYVDYVNLMTYDYHG 196 (343)
T ss_dssp HHHHHHHHSTSEEEEEEEC---------SHH-----HHTTH--HHHHHHTTSSEEEEETTSSSS
T ss_pred hcccccccceeEEeecccc---------ccc-----ccccc--ccccccccccccccccccCCC
Confidence 9885210 01334443211 100 00111 123456678999888887665
No 83
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=24.38 E-value=2.9e+02 Score=25.61 Aligned_cols=69 Identities=6% Similarity=0.115 Sum_probs=47.1
Q ss_pred CCHHHHHHHHhcCCCCEEEEccCC--------hHHHHHHhc-CCCeEEEeeCcchhhhhhhhHHHHHHHHHhcccccCCC
Q 043422 43 PPPEQVIDLYGRCQINFVRLFEPR--------HEVLEALRG-RPQLLSLGTKNEEIQSIASSQQASDEWVKTHVVPFVDN 113 (344)
Q Consensus 43 ps~~~v~~llk~~~~~~VRiY~~d--------~~vL~A~~~-~gi~v~lGv~~~~~~~la~~~~~a~~wv~~~v~~~~~~ 113 (344)
.+|-++++.++..|++.+-+.|.| .++++.+.. .-.+|.+|=-...+ +.+..++..
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~~v~vGGGIrs~-------e~~~~~l~~-------- 94 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFDWIQVGGGIRDI-------EKAKRLLSL-------- 94 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCCCEEEeCCcCCH-------HHHHHHHHC--------
Confidence 368899999988999999999876 257777665 43478886544322 234444432
Q ss_pred ccEEEEEecccccC
Q 043422 114 VNIGYITVGNEVIP 127 (344)
Q Consensus 114 ~~I~~I~VGNEvl~ 127 (344)
.+..|+||+|.+.
T Consensus 95 -Ga~kvvigt~a~~ 107 (232)
T PRK13586 95 -DVNALVFSTIVFT 107 (232)
T ss_pred -CCCEEEECchhhC
Confidence 2445789999985
No 84
>PRK07198 hypothetical protein; Validated
Probab=24.25 E-value=62 Score=32.76 Aligned_cols=37 Identities=16% Similarity=0.111 Sum_probs=31.8
Q ss_pred HHHHhcCCCCEE-EEccCChHHHHHHhcCCCeEEEeeC
Q 043422 49 IDLYGRCQINFV-RLFEPRHEVLEALRGRPQLLSLGTK 85 (344)
Q Consensus 49 ~~llk~~~~~~V-RiY~~d~~vL~A~~~~gi~v~lGv~ 85 (344)
.++|+..|+++| |+.+.++.-..++.+.||+|.==++
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 578888999999 9999998888999999999975454
No 85
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=24.22 E-value=41 Score=34.02 Aligned_cols=19 Identities=21% Similarity=0.555 Sum_probs=16.5
Q ss_pred hHHHHHHHHHhcccccCCC
Q 043422 95 SQQASDEWVKTHVVPFVDN 113 (344)
Q Consensus 95 ~~~~a~~wv~~~v~~~~~~ 113 (344)
++..|.+||++||..|.++
T Consensus 188 Dq~~AL~WV~~nI~~FGGD 206 (535)
T PF00135_consen 188 DQRLALKWVQDNIAAFGGD 206 (535)
T ss_dssp HHHHHHHHHHHHGGGGTEE
T ss_pred hhHHHHHHHHhhhhhcccC
Confidence 6778999999999999654
No 86
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=23.67 E-value=1.1e+02 Score=26.97 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHhcCCCC-EEEEccCC--h----HHHHHHhcCCCeEEEeeCc
Q 043422 40 DNLPPPEQVIDLYGRCQIN-FVRLFEPR--H----EVLEALRGRPQLLSLGTKN 86 (344)
Q Consensus 40 ~n~ps~~~v~~llk~~~~~-~VRiY~~d--~----~vL~A~~~~gi~v~lGv~~ 86 (344)
+|+|-.++..+.|+..|+. .+|+.++. + +.++.+++.|++|++.+-.
T Consensus 9 SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG 62 (156)
T TIGR01162 9 SDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAG 62 (156)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5788888999999999985 58998875 3 3444445679999999874
No 87
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=23.21 E-value=7.4e+02 Score=24.90 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHhcCC
Q 043422 131 AQYVGQAINNILNSLNNYGI 150 (344)
Q Consensus 131 ~~~Lv~am~~v~~aL~~~gl 150 (344)
.+.++.-|+++|++|+..++
T Consensus 168 ~~nf~~Ll~elr~~l~~~~~ 187 (413)
T cd02873 168 KEQFTALVRELKNALRPDGL 187 (413)
T ss_pred HHHHHHHHHHHHHHhcccCc
Confidence 45688899999999987765
No 88
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=22.73 E-value=6.9e+02 Score=24.01 Aligned_cols=26 Identities=12% Similarity=0.250 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhcCCceeeccCCccc
Q 043422 182 AVLKDIAQNLWHRGFPIMINVYPYFA 207 (344)
Q Consensus 182 ~~~~~~l~fL~~~~d~~~vNiyPyf~ 207 (344)
|-.+.+++-|.+.+=-++++++|+..
T Consensus 70 Pdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 70 PDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 44578888898888889999999876
No 89
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=22.69 E-value=1.5e+02 Score=26.99 Aligned_cols=39 Identities=13% Similarity=0.035 Sum_probs=34.2
Q ss_pred HHHHhcCCCCEEEEccCChHHHHHHhcCCCeEEEeeCcc
Q 043422 49 IDLYGRCQINFVRLFEPRHEVLEALRGRPQLLSLGTKNE 87 (344)
Q Consensus 49 ~~llk~~~~~~VRiY~~d~~vL~A~~~~gi~v~lGv~~~ 87 (344)
+++|+-.||++||+-+.+|.-..++.+.||+|.=-+++.
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~ 171 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLI 171 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecC
Confidence 578888999999999999988899999999998877763
No 90
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=22.17 E-value=4.4e+02 Score=21.49 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=55.8
Q ss_pred HHHhcCCCCEEEEccCC----------hHHHHHHhcCCCeEEEeeCcchhhhhhhhHHHHHHHHHhcccccCCCccEEEE
Q 043422 50 DLYGRCQINFVRLFEPR----------HEVLEALRGRPQLLSLGTKNEEIQSIASSQQASDEWVKTHVVPFVDNVNIGYI 119 (344)
Q Consensus 50 ~llk~~~~~~VRiY~~d----------~~vL~A~~~~gi~v~lGv~~~~~~~la~~~~~a~~wv~~~v~~~~~~~~I~~I 119 (344)
+-|.++|.++|-+-..+ .....+++..|++...-............ .....|+++. .| ++|
T Consensus 2 ~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~----~p----dai 72 (160)
T PF13377_consen 2 DYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSEDAR-EAQLLWLRRL----RP----DAI 72 (160)
T ss_dssp HHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHHHH-HHHHHHHHTC----SS----SEE
T ss_pred hHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchhHH-HHHHHHHhcC----CC----cEE
Confidence 44556678887777632 13456788899975433322111111111 1223366544 12 378
Q ss_pred EecccccCCCChHHHHHHHHHHHHHHHhcCC--CCceEEeeeeccceecccCCCCCcccchhHH
Q 043422 120 TVGNEVIPGTNAQYVGQAINNILNSLNNYGI--TKQIKVTTVLPGTSLASSYPPSAGAFTNEAA 181 (344)
Q Consensus 120 ~VGNEvl~~~~~~~Lv~am~~v~~aL~~~gl--~~~I~VsT~~~~~~l~~s~PPs~g~F~~~~~ 181 (344)
+++|+.+ +. .+..+|++.|+ .+++.|-+-+........+ |...++..+..
T Consensus 73 i~~~~~~----a~-------~~~~~l~~~g~~vP~di~vv~~~~~~~~~~~~-p~it~i~~~~~ 124 (160)
T PF13377_consen 73 ICSNDRL----AL-------GVLRALRELGIRVPQDISVVSFDDSPLLEFFS-PPITTIDQDPR 124 (160)
T ss_dssp EESSHHH----HH-------HHHHHHHHTTSCTTTTSEEEEESSSGHHHCSS-STSEEEEE-HH
T ss_pred EEcCHHH----HH-------HHHHHHHHcCCcccccccEEEecCcHHHHHHc-CCCceecCCHH
Confidence 8888775 22 23355666676 3567776665443332223 44455554443
No 91
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=22.04 E-value=1.4e+02 Score=28.93 Aligned_cols=80 Identities=15% Similarity=0.091 Sum_probs=52.5
Q ss_pred ccEEEEEecccccC-----C---CC--hHHHHHHHHHHHHHHHhcCCCCceEEeeeeccceecccCCCCCc----ccchh
Q 043422 114 VNIGYITVGNEVIP-----G---TN--AQYVGQAINNILNSLNNYGITKQIKVTTVLPGTSLASSYPPSAG----AFTNE 179 (344)
Q Consensus 114 ~~I~~I~VGNEvl~-----~---~~--~~~Lv~am~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~PPs~g----~F~~~ 179 (344)
..|...+||+|..- + .+ +..|..-+.+||..| +..+|||-+-.|+.+.. |-|.-| .|+-
T Consensus 18 ggVdaF~IGSEl~gLT~iR~~~~~fPaV~~l~~LAa~VR~il-----G~~~kitYAADWsEY~~-~~p~dg~gd~~f~L- 90 (299)
T PF13547_consen 18 GGVDAFCIGSELRGLTRIRDGAGSFPAVEALRALAADVRAIL-----GPGTKITYAADWSEYFG-YQPADGSGDVYFHL- 90 (299)
T ss_pred CCCcEEEEchhhhhheeecCCCCCCcHHHHHHHHHHHHHHHh-----CCCceEEEeccCHHhcC-cCCCCCCCcccccC-
Confidence 45889999999873 1 12 467888888888876 23578999888877754 555544 4432
Q ss_pred HHHHHHHHHHHHhhcCCceeeccCCccc
Q 043422 180 AAAVLKDIAQNLWHRGFPIMINVYPYFA 207 (344)
Q Consensus 180 ~~~~~~~~l~fL~~~~d~~~vNiyPyf~ 207 (344)
.|+. -....|+++|+-|.=.+
T Consensus 91 -----DpLW--a~~~IDfIGID~Y~PLS 111 (299)
T PF13547_consen 91 -----DPLW--ADPNIDFIGIDNYFPLS 111 (299)
T ss_pred -----cccc--cCCcCCEEEeecccccC
Confidence 2322 23467889998875443
No 92
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=21.65 E-value=1.5e+02 Score=27.27 Aligned_cols=69 Identities=10% Similarity=0.250 Sum_probs=47.1
Q ss_pred CCHHHHHHHHhcCCCCEEEEccCC---------hHHHHHHh-cCCCeEEEeeCcchhhhhhhhHHHHHHHHHhcccccCC
Q 043422 43 PPPEQVIDLYGRCQINFVRLFEPR---------HEVLEALR-GRPQLLSLGTKNEEIQSIASSQQASDEWVKTHVVPFVD 112 (344)
Q Consensus 43 ps~~~v~~llk~~~~~~VRiY~~d---------~~vL~A~~-~~gi~v~lGv~~~~~~~la~~~~~a~~wv~~~v~~~~~ 112 (344)
.+|-++++.+...|++.+-+-|.| .+++..+. ..++.|.+|--.... +.+..|+..
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~~~~~i~vgGGIrs~-------ed~~~ll~~------- 94 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAKETGIPIQVGGGIRSI-------EDAERLLDA------- 94 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHHSSSEEEEESSE-SH-------HHHHHHHHT-------
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHhcCCccEEEeCccCcH-------HHHHHHHHh-------
Confidence 478899999988999999888765 14555444 578999999775433 334555532
Q ss_pred CccEEEEEecccccC
Q 043422 113 NVNIGYITVGNEVIP 127 (344)
Q Consensus 113 ~~~I~~I~VGNEvl~ 127 (344)
-+..|++|.|.+.
T Consensus 95 --Ga~~Vvigt~~~~ 107 (229)
T PF00977_consen 95 --GADRVVIGTEALE 107 (229)
T ss_dssp --T-SEEEESHHHHH
T ss_pred --CCCEEEeChHHhh
Confidence 2447899999885
No 93
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=21.57 E-value=1.7e+02 Score=27.28 Aligned_cols=52 Identities=15% Similarity=0.136 Sum_probs=37.8
Q ss_pred CceeeEeecCCCCCCC----CHHHHHHHHhcCCCCEEEEccCC--------hHHHHHHhcCCCe
Q 043422 28 ANVIGVNYGLNGDNLP----PPEQVIDLYGRCQINFVRLFEPR--------HEVLEALRGRPQL 79 (344)
Q Consensus 28 ~~~~GvnYg~~~~n~p----s~~~v~~llk~~~~~~VRiY~~d--------~~vL~A~~~~gi~ 79 (344)
.+.+=|.-||..+..+ +-+..+.+||..|.+.|+.|-.. ..|.+|+++.|+.
T Consensus 116 ~G~VkISTGp~Ss~~~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~ 179 (236)
T TIGR03581 116 PGLVNISTGPLSSQGKEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFY 179 (236)
T ss_pred cceEEeccCcccccCCCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCc
Confidence 3455677777655543 34566889999999999999664 2577888888875
No 94
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=21.57 E-value=1.8e+02 Score=21.71 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=27.6
Q ss_pred HHHHHHHHhcccccCCCccEEEEEecccccCC----C-ChHHHHHHHHHHHHHHHhc
Q 043422 97 QASDEWVKTHVVPFVDNVNIGYITVGNEVIPG----T-NAQYVGQAINNILNSLNNY 148 (344)
Q Consensus 97 ~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~----~-~~~~Lv~am~~v~~aL~~~ 148 (344)
+....|+++||.- |+|.++. . ....|+|+++..++.++..
T Consensus 11 ~iLi~WLedNi~~------------es~iiFDNded~tdSa~llp~ie~a~~~~r~l 55 (65)
T PF06117_consen 11 EILIAWLEDNIDC------------ESDIIFDNDEDKTDSAALLPAIEQARADVRPL 55 (65)
T ss_pred HHHHHHHHcccCC------------CCCeeecCCCcccchHHHHHHHHHHHHHHHHH
Confidence 4457899998753 4455551 1 2678999999999887653
No 95
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=21.34 E-value=1.4e+02 Score=30.53 Aligned_cols=40 Identities=13% Similarity=0.258 Sum_probs=28.8
Q ss_pred HHHHHH----HHhcCCCCEEEEccC--C----hHHHHHHhcCCCeEEEee
Q 043422 45 PEQVID----LYGRCQINFVRLFEP--R----HEVLEALRGRPQLLSLGT 84 (344)
Q Consensus 45 ~~~v~~----llk~~~~~~VRiY~~--d----~~vL~A~~~~gi~v~lGv 84 (344)
+++|++ ..-.||++.+|+||+ | ...+++++++|..+-..+
T Consensus 96 aDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i 145 (472)
T COG5016 96 ADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTI 145 (472)
T ss_pred chHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEE
Confidence 355655 334589999999998 4 357788888888765555
No 96
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=21.23 E-value=86 Score=25.16 Aligned_cols=20 Identities=10% Similarity=0.160 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 043422 8 GMLVAAAILVIRIQLLAFTG 27 (344)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~ 27 (344)
..||++++|++++.+++.++
T Consensus 5 ~~llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 5 AFLLLGLLLAALLLISSEVA 24 (95)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 33444444444444444333
No 97
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.88 E-value=3.2e+02 Score=25.22 Aligned_cols=69 Identities=17% Similarity=0.285 Sum_probs=47.1
Q ss_pred CCHHHHHHHHhc-CCCCEEEEccCC---------hHHHHHHh-cCCCeEEEeeCcchhhhhhhhHHHHHHHHHhcccccC
Q 043422 43 PPPEQVIDLYGR-CQINFVRLFEPR---------HEVLEALR-GRPQLLSLGTKNEEIQSIASSQQASDEWVKTHVVPFV 111 (344)
Q Consensus 43 ps~~~v~~llk~-~~~~~VRiY~~d---------~~vL~A~~-~~gi~v~lGv~~~~~~~la~~~~~a~~wv~~~v~~~~ 111 (344)
.+|.++++.+.. .|++.+-+.|.| .++++.++ ..+++|.+|=-..... .+..++..
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e-------~v~~~l~~------ 97 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIRTKS-------QIMDYFAA------ 97 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEEEcCCcCCHH-------HHHHHHHC------
Confidence 477788888877 799999999876 25676665 4788999976554332 23334321
Q ss_pred CCccEEEEEecccccC
Q 043422 112 DNVNIGYITVGNEVIP 127 (344)
Q Consensus 112 ~~~~I~~I~VGNEvl~ 127 (344)
-+..|+||+|.+.
T Consensus 98 ---Ga~kvvigt~a~~ 110 (234)
T PRK13587 98 ---GINYCIVGTKGIQ 110 (234)
T ss_pred ---CCCEEEECchHhc
Confidence 2445789999985
No 98
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=20.86 E-value=2.2e+02 Score=21.80 Aligned_cols=45 Identities=16% Similarity=0.050 Sum_probs=30.3
Q ss_pred CccEEEEEeccc-ccC---------CC-ChHHHHHHHHHHHHHHHhcCCCCceEEeee
Q 043422 113 NVNIGYITVGNE-VIP---------GT-NAQYVGQAINNILNSLNNYGITKQIKVTTV 159 (344)
Q Consensus 113 ~~~I~~I~VGNE-vl~---------~~-~~~~Lv~am~~v~~aL~~~gl~~~I~VsT~ 159 (344)
+.+|.+-=|+|| ... ++ ..+.+.+.|+++-+.+++..- ..+||+.
T Consensus 8 ~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP--~~pvt~g 63 (88)
T PF12876_consen 8 DPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDP--SQPVTSG 63 (88)
T ss_dssp GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-T--TS-EE--
T ss_pred CCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCC--CCcEEee
Confidence 467999999999 541 11 257889999999999998874 4566654
No 99
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=20.68 E-value=1.5e+02 Score=22.44 Aligned_cols=23 Identities=22% Similarity=-0.012 Sum_probs=16.9
Q ss_pred CCCHHHHHHHHhcCCCCEEEEccC
Q 043422 42 LPPPEQVIDLYGRCQINFVRLFEP 65 (344)
Q Consensus 42 ~ps~~~v~~llk~~~~~~VRiY~~ 65 (344)
..+.+++.+.++..|. .||-...
T Consensus 28 ~~~~~~~~~~l~~~G~-~v~~ve~ 50 (83)
T PF13670_consen 28 WLSIEQAVAKLEAQGY-QVREVEF 50 (83)
T ss_pred cCCHHHHHHHHHhcCC-ceEEEEE
Confidence 3478889999988887 6665544
No 100
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=20.34 E-value=1.2e+02 Score=29.40 Aligned_cols=218 Identities=16% Similarity=0.137 Sum_probs=104.8
Q ss_pred HHHHHHhcCCCeEE--EeeCcchhhhhhh------------hHHHHHHHHHhcccccCCC-ccEEEEEecccccCCC---
Q 043422 68 EVLEALRGRPQLLS--LGTKNEEIQSIAS------------SQQASDEWVKTHVVPFVDN-VNIGYITVGNEVIPGT--- 129 (344)
Q Consensus 68 ~vL~A~~~~gi~v~--lGv~~~~~~~la~------------~~~~a~~wv~~~v~~~~~~-~~I~~I~VGNEvl~~~--- 129 (344)
.++.-++..||+|- .=||....+..-. -.+...+++.+-+..| .+ .+|...=|=||++..+
T Consensus 63 ~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y-~~~g~i~~WDVvNE~i~~~~~~ 141 (320)
T PF00331_consen 63 AILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTRY-KDKGRIYAWDVVNEAIDDDGNP 141 (320)
T ss_dssp HHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHT-TTTTTESEEEEEES-B-TTSSS
T ss_pred HHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhHh-ccccceEEEEEeeecccCCCcc
Confidence 56677777888773 3335432222100 1234456666655555 44 4799988889999721
Q ss_pred ------C------hHHHHHHHHHHHHHHHhcCCCCceEEeeeeccceecccCCCCCcccchhHHHHHHHHHHHHhhcCCc
Q 043422 130 ------N------AQYVGQAINNILNSLNNYGITKQIKVTTVLPGTSLASSYPPSAGAFTNEAAAVLKDIAQNLWHRGFP 197 (344)
Q Consensus 130 ------~------~~~Lv~am~~v~~aL~~~gl~~~I~VsT~~~~~~l~~s~PPs~g~F~~~~~~~~~~~l~fL~~~~d~ 197 (344)
. .+.+..+.+-.|++..++ +.---+ .+++ .+ +-...+..+++.|.+.+-|
T Consensus 142 ~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~a------~L~~ND-y~~~----~~-------~k~~~~~~lv~~l~~~gvp 203 (320)
T PF00331_consen 142 GGLRDSPWYDALGPDYIADAFRAAREADPNA------KLFYND-YNIE----SP-------AKRDAYLNLVKDLKARGVP 203 (320)
T ss_dssp SSBCTSHHHHHHTTCHHHHHHHHHHHHHTTS------EEEEEE-SSTT----ST-------HHHHHHHHHHHHHHHTTHC
T ss_pred ccccCChhhhcccHhHHHHHHHHHHHhCCCc------EEEecc-cccc----ch-------HHHHHHHHHHHHHHhCCCc
Confidence 1 234445666666665432 221111 1111 11 1123456667767665333
Q ss_pred eeeccCCcccccCCCCCcCcccccccCCCccccCCCccchhHHHHHHHHHHHHHHHcCCCCccEEEeeccCCCCCCC-CC
Q 043422 198 IMINVYPYFAYASDPSHISLDYALFQSKDPVVRDGPYLYYNLFDAMVDAFHSALEKIDVPNVTLAISESGWPSAGNE-PY 276 (344)
Q Consensus 198 ~~vNiyPyf~~~~~~~~i~l~~A~f~~~~~~~~~~~~~y~n~fda~~da~~~al~~~g~~~~~vvVtETGWPS~G~~-~~ 276 (344)
+ |=-=|| +|..... . .+.+..+|++..--+++|.|||--=...... ..
T Consensus 204 I-------------------dgIG~Q--~H~~~~~----~------~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~~~ 252 (320)
T PF00331_consen 204 I-------------------DGIGLQ--SHFDAGY----P------PEQIWNALDRFASLGLPIHITELDVRDDDNPPDA 252 (320)
T ss_dssp S--------------------EEEEE--EEEETTS----S------HHHHHHHHHHHHTTTSEEEEEEEEEESSSTTSCH
T ss_pred c-------------------ceechh--hccCCCC----C------HHHHHHHHHHHHHcCCceEEEeeeecCCCCCcch
Confidence 1 111111 1111110 0 2333444555555579999999643333221 02
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCCCCcccEEEEEeecCC-CCCCCCcCceeeecCCCCeeec
Q 043422 277 TSIENAQKYNKNLMDHVLGGKGTPRRPGQTFDTFLFEMFNEN-QKPAGVEQNFGFFYPNMQPIYP 340 (344)
Q Consensus 277 as~~na~~y~~~li~~~~~~~Gtp~rpg~~~~~y~F~~fDe~-wK~~~~E~~wGlf~~d~~~ky~ 340 (344)
...+.|+.+++++++.+.+.. +..-..+.+-...|.. |.+...-.+=+||+.|.+||..
T Consensus 253 ~~~~~qA~~~~~~~~~~~~~~-----~~~v~git~Wg~~D~~sW~~~~~~~~~~lfd~~~~~Kpa 312 (320)
T PF00331_consen 253 EEEEAQAEYYRDFLTACFSHP-----PAAVEGITWWGFTDGYSWRPDTPPDRPLLFDEDYQPKPA 312 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-----HCTEEEEEESSSBTTGSTTGGHSEG--SSB-TTSBB-HH
T ss_pred HHHHHHHHHHHHHHHHHHhCC-----ccCCCEEEEECCCCCCcccCCCCCCCCeeECCCcCCCHH
Confidence 346678889999999886431 0111234444555543 6541012344799999999853
No 101
>PRK09989 hypothetical protein; Provisional
Probab=20.28 E-value=2.1e+02 Score=26.26 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=38.3
Q ss_pred eeEeecCCCCCCCCHHHHHHHHhcCCCCEEEEcc---CC-hHHHHHHhcCCCeEEE
Q 043422 31 IGVNYGLNGDNLPPPEQVIDLYGRCQINFVRLFE---PR-HEVLEALRGRPQLLSL 82 (344)
Q Consensus 31 ~GvnYg~~~~n~ps~~~v~~llk~~~~~~VRiY~---~d-~~vL~A~~~~gi~v~l 82 (344)
..+|.+..-.++ |-.+.++.++..||+.|-+.. .+ .++.+.++++||++..
T Consensus 4 ~~~~~~~~~~~~-~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 4 FAANLSMMFTEV-PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred eeeehhhhhcCC-CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEE
Confidence 456777665555 567889999999999998843 33 4677788899999875
No 102
>PRK08944 motB flagellar motor protein MotB; Reviewed
Probab=20.05 E-value=4.3e+02 Score=25.58 Aligned_cols=72 Identities=11% Similarity=0.120 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEeeeeccceecc----cCCCCCcccchhHHHHHHHHHHHHhhcCCceeeccC
Q 043422 132 QYVGQAINNILNSLNNYGITKQIKVTTVLPGTSLAS----SYPPSAGAFTNEAAAVLKDIAQNLWHRGFPIMINVY 203 (344)
Q Consensus 132 ~~Lv~am~~v~~aL~~~gl~~~I~VsT~~~~~~l~~----s~PPs~g~F~~~~~~~~~~~l~fL~~~~d~~~vNiy 203 (344)
..+-...++++..|+..+..+.|.|......-++.- .|++.+...+++..+.|..+.+.|......+.|--|
T Consensus 142 ~~~~~~~~~l~~~l~~~~~~~~v~v~~~~~~v~I~l~~~~~F~~gsa~L~~~~~~~L~~ia~~L~~~~~~I~I~GH 217 (302)
T PRK08944 142 EQIEDLVKKLAQQLEKEIEDGAIEIESLGQQIIIRIREKGSFPSGSAFLQPKFKPVVRKIGELLKDVPGIITVSGH 217 (302)
T ss_pred HHHHHHHHHHHHHHHHHhhcCceEEEEeCCEEEEEeCCCCeeCCCCcccCHHHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 455566678888888888877888876655433321 377777777777777888888887665444444444
Done!