BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043429
(646 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 589 bits (1519), Expect = e-168, Method: Compositional matrix adjust.
Identities = 304/596 (51%), Positives = 400/596 (67%), Gaps = 37/596 (6%)
Query: 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMR 143
N+RNF IIAH+DHGKSTLAD+LL+ TG + +RE +EQ LD +D+ERERGIT+K+QA RM
Sbjct: 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMF 64
Query: 144 Y-VFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN 202
Y + + L+LIDTPGHVDFSYEVSR+LAACEGALL++DASQG+EAQT+AN + A+E
Sbjct: 65 YKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQ 124
Query: 203 NLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRIPP 262
+L IIPV+NKIDLP A+ RV ++IEEV+GLD AIL SAKEGIGI EIL AIV RIPP
Sbjct: 125 DLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP 184
Query: 263 PSNTAGCPFRALIFD-------------RI----------IMLM---------KLECYPP 290
P P +ALIFD RI IMLM ++ P
Sbjct: 185 PKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTP 244
Query: 291 IKCKWKNFK--QVGYLSASIRSVADARVGDTITHFNRKADNLLPGYEEATPMVFCGLFPV 348
K+ VGY++ASI+ V D R+GDTITH +PG++ A PMV+ G++P
Sbjct: 245 KMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNPTKEPVPGFQPAKPMVYAGIYPA 304
Query: 349 DADQFPELRDALEKLQLNDAALKFEPETSSAMXXXXXXXXXXXXHMEIVQERLEREYNLS 408
+ + ELRDALEK +NDAA+ +EPE+S A+ HMEIVQERLEREY +
Sbjct: 305 EDTTYEELRDALEKYAINDAAIVYEPESSPALGMGFRVGFLGLLHMEIVQERLEREYGVK 364
Query: 409 LITTAPSVVYRVNC-VNGQTVECSNPSLLPE-PGQRRSIEEPFVKIELLTPKEYIGSLME 466
+ITTAP+V+YRV + +E NP P+ G +EEPFV + ++TPKEY+G +++
Sbjct: 365 IITTAPNVIYRVKKKFTDEVIEVRNPMDFPDNAGLIEYVEEPFVLVTIITPKEYVGPIIQ 424
Query: 467 LAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKESQ 526
L Q++RG K M Y + L YE+PL+E++ DF D++KS ++G+AS +Y F+GY+ S
Sbjct: 425 LCQEKRGIQKNMTYLDPNTVYLEYEMPLSEIIVDFHDKIKSISRGFASYDYEFIGYRPSD 484
Query: 527 LIKLDILINGDCVEPLATIVHKDKAYAVGRALTQKLKELIPRQMFKVPIQACIGSKVIAS 586
LIKL +LIN V+ L+ IVH D+A R + +KL+E IPRQ+F+V IQ G KVIAS
Sbjct: 485 LIKLTVLINKKPVDALSFIVHADRAQKFARRVAEKLRETIPRQLFEVHIQVAKGGKVIAS 544
Query: 587 EALSAIRKDVLAKCYGGDISRXXXXXXXQAEGKKRMKAIGKVDVPQEAFMAVLKLE 642
E + +R +V AKCYGGD++R Q EGKKRMK GKV +PQEAF++VLK+E
Sbjct: 545 ERIKPLRANVTAKCYGGDVTRKKKLLENQKEGKKRMKQFGKVQLPQEAFLSVLKVE 600
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 572 bits (1474), Expect = e-163, Method: Compositional matrix adjust.
Identities = 296/596 (49%), Positives = 390/596 (65%), Gaps = 37/596 (6%)
Query: 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMR 143
N+RNF IIAH+DHGKSTLAD+LL+ TG + +RE +EQ LD +D+ERERGIT+K QA R
Sbjct: 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKXQAVRXF 64
Query: 144 Y-VFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN 202
Y + + L+LIDTPGHVDFSYEVSR+LAACEGALL++DASQG+EAQT+AN + A+E
Sbjct: 65 YKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQ 124
Query: 203 NLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRIPP 262
+L IIPV+NKIDLP A+ RV ++IEEV+GLD AIL SAKEGIGI EIL AIV RIPP
Sbjct: 125 DLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP 184
Query: 263 PSNTAGCPFRALIFDR----------IIMLMKLECYP----------------------P 290
P P +ALIFD + + E P P
Sbjct: 185 PKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIXLXSTGKEYEVTEVGAQTP 244
Query: 291 IKCKWKNFK--QVGYLSASIRSVADARVGDTITHFNRKADNLLPGYEEATPMVFCGLFPV 348
K+ VGY++ASI+ V D R+GDTITH +PG++ A P V+ G++P
Sbjct: 245 KXTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNPTKEPVPGFQPAKPXVYAGIYPA 304
Query: 349 DADQFPELRDALEKLQLNDAALKFEPETSSAMXXXXXXXXXXXXHMEIVQERLEREYNLS 408
+ + ELRDALEK +NDAA+ +EPE+S A+ H EIVQERLEREY +
Sbjct: 305 EDTTYEELRDALEKYAINDAAIVYEPESSPALGXGFRVGFLGLLHXEIVQERLEREYGVK 364
Query: 409 LITTAPSVVYRVNC-VNGQTVECSNPSLLPE-PGQRRSIEEPFVKIELLTPKEYIGSLME 466
+ITTAP+V+YRV + +E NP P+ G +EEPFV + ++TPKEY+G +++
Sbjct: 365 IITTAPNVIYRVKKKFTDEVIEVRNPXDFPDNAGLIEYVEEPFVLVTIITPKEYVGPIIQ 424
Query: 467 LAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKESQ 526
L Q++RG K Y + L YE PL+E++ DF D++KS ++G+AS +Y F+GY+ S
Sbjct: 425 LCQEKRGIQKNXTYLDPNTVYLEYEXPLSEIIVDFHDKIKSISRGFASYDYEFIGYRPSD 484
Query: 527 LIKLDILINGDCVEPLATIVHKDKAYAVGRALTQKLKELIPRQMFKVPIQACIGSKVIAS 586
LIKL +LIN V+ L+ IVH D+A R + +KL+E IPRQ+F+V IQ G KVIAS
Sbjct: 485 LIKLTVLINKKPVDALSFIVHADRAQKFARRVAEKLRETIPRQLFEVHIQVAKGGKVIAS 544
Query: 587 EALSAIRKDVLAKCYGGDISRXXXXXXXQAEGKKRMKAIGKVDVPQEAFMAVLKLE 642
E + +R +V AKCYGGD++R Q EGKKR K GKV +PQEAF++VLK+E
Sbjct: 545 ERIKPLRANVTAKCYGGDVTRKKKLLENQKEGKKRXKQFGKVQLPQEAFLSVLKVE 600
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 561 bits (1447), Expect = e-160, Method: Compositional matrix adjust.
Identities = 290/596 (48%), Positives = 397/596 (66%), Gaps = 36/596 (6%)
Query: 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMR 143
NIRNFSIIAHIDHGKSTL+D+++Q+ G + REM+ Q LD+MDLERERGITIK Q+ +
Sbjct: 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLD 62
Query: 144 Y-VFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN 202
Y + E + LN IDTPGHVDFSYEVSRSLAACEGALLVVDA QGVEAQTLAN Y A+E
Sbjct: 63 YKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM 122
Query: 203 NLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRIPP 262
+LE++PVLNKIDLP A+P RVA EIE+++G+D T+A+ CSAK G+G+ ++L +V+ IPP
Sbjct: 123 DLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPP 182
Query: 263 PSNTAGCPFRALIFDR-------IIMLMK-------------------------LECYPP 290
P P +ALI D ++ L++ L + P
Sbjct: 183 PEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTP 242
Query: 291 IKCKWKNFK--QVGYLSASIRSVADARVGDTITHFNRKADNLLPGYEEATPMVFCGLFPV 348
+ K +VG+L +I+ + A VGDT+T A+ LPG+++ P V+ GLFPV
Sbjct: 243 KQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVYAGLFPV 302
Query: 349 DADQFPELRDALEKLQLNDAALKFEPETSSAMXXXXXXXXXXXXHMEIVQERLEREYNLS 408
+D + RDAL KL LNDA+L +EPE+SSA+ HMEI+QERLEREY+L
Sbjct: 303 SSDDYEAFRDALGKLSLNDASLFYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLD 362
Query: 409 LITTAPSVVYRVNCVNGQTVECSNPSLLPEPGQRRSIEEPFVKIELLTPKEYIGSLMELA 468
LITTAP+VVY V + + + +PS LP + EP + +L P+ Y+G+++ L
Sbjct: 363 LITTAPTVVYEVETTSREVIYVDSPSKLPAVNNIYELREPIAECHMLLPQAYLGNVITLC 422
Query: 469 QDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKESQLI 528
++RG M Y ++ +L YE+P+AE+V DFFD+LKS ++GYAS++Y F ++ S ++
Sbjct: 423 VEKRGVQTNMVYHG-NQVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQASDMV 481
Query: 529 KLDILINGDCVEPLATIVHKDKAYAVGRALTQKLKELIPRQMFKVPIQACIGSKVIASEA 588
++D+LING+ V+ LA I H+D + GR L +K+K+LIPRQ F + IQA IG+ +IA
Sbjct: 482 RVDVLINGERVDALALITHRDNSQNRGRELVEKMKDLIPRQQFDIAIQAAIGTHIIARST 541
Query: 589 LSAIRKDVLAKCYGGDISRXXXXXXXQAEGKKRMKAIGKVDVPQEAFMAVLKLEKE 644
+ +RK+VLAKCYGGDISR Q EGKKRMK IG V++PQEAF+A+L + K+
Sbjct: 542 VKQLRKNVLAKCYGGDISRKKKLLQKQKEGKKRMKQIGNVELPQEAFLAILHVGKD 597
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 496 bits (1278), Expect = e-140, Method: Compositional matrix adjust.
Identities = 257/537 (47%), Positives = 355/537 (66%), Gaps = 36/537 (6%)
Query: 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMR 143
NIRNFSIIAHIDHGKSTL+D+++Q+ G + REM+ Q LD+MDLERERGITIK Q+ +
Sbjct: 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLD 62
Query: 144 Y-VFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN 202
Y + E + LN IDTPGHVDFSYEVSRSLAACEGALLVVDA QGVEAQTLAN Y A+E
Sbjct: 63 YKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM 122
Query: 203 NLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRIPP 262
+LE++PVLNKIDLP A+P RVA EIE+++G+D T+A+ CSAK G+G+ ++L +V+ IPP
Sbjct: 123 DLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPP 182
Query: 263 PSNTAGCPFRALIFDR-------IIMLM-------------------------KLECYPP 290
P P +ALI D ++ L+ +L + P
Sbjct: 183 PEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTP 242
Query: 291 IKCKWKNFK--QVGYLSASIRSVADARVGDTITHFNRKADNLLPGYEEATPMVFCGLFPV 348
+ K +VG+L +I+ + A VGDT+T A+ LPG+++ P V+ GLFPV
Sbjct: 243 KQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVYAGLFPV 302
Query: 349 DADQFPELRDALEKLQLNDAALKFEPETSSAMXXXXXXXXXXXXHMEIVQERLEREYNLS 408
+D + RDAL KL LNDA+L +EPE+SSA+ HMEI+QERLEREY+L
Sbjct: 303 SSDDYEAFRDALGKLSLNDASLFYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLD 362
Query: 409 LITTAPSVVYRVNCVNGQTVECSNPSLLPEPGQRRSIEEPFVKIELLTPKEYIGSLMELA 468
LITTAP+VVY V + + + +PS LP + EP + +L P+ Y+G+++ L
Sbjct: 363 LITTAPTVVYEVETTSREVIYVDSPSKLPAVNNIYELREPIAECHMLLPQAYLGNVITLC 422
Query: 469 QDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKESQLI 528
++RG M Y ++ +L YE+P+AE+V DFFD+LKS ++GYAS++Y F ++ S ++
Sbjct: 423 VEKRGVQTNMVYHG-NQVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQASDMV 481
Query: 529 KLDILINGDCVEPLATIVHKDKAYAVGRALTQKLKELIPRQMFKVPIQACIGSKVIA 585
++D+LING+ V+ LA I H+D + GR L +K+K+LIPRQ F + IQA IG+ +IA
Sbjct: 482 RVDVLINGERVDALALITHRDNSQNRGRELVEKMKDLIPRQQFDIAIQAAIGTHIIA 538
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 92/160 (57%), Gaps = 13/160 (8%)
Query: 68 LATRVGQDRLLKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKE-QFLDNMD 126
+A V Q R L +N+RN S+IAH+DHGKSTL D L+Q G + + E +F D
Sbjct: 2 VAFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRK 61
Query: 127 LERERGITIKLQAARMRYVFENE------------PFCLNLIDTPGHVDFSYEVSRSLAA 174
E+ERGITIK A + +E F +NLID+PGHVDFS EV+ +L
Sbjct: 62 DEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRV 121
Query: 175 CEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKID 214
+GAL+VVD +GV QT + AL ++ + V+NK+D
Sbjct: 122 TDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVD 161
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 92/160 (57%), Gaps = 13/160 (8%)
Query: 68 LATRVGQDRLLKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKE-QFLDNMD 126
+A V Q R L +N+RN S+IAH+DHGKSTL D L+Q G + + E +F D
Sbjct: 2 VAFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRK 61
Query: 127 LERERGITIKLQAARMRYVFENE------------PFCLNLIDTPGHVDFSYEVSRSLAA 174
E+ERGITIK A + +E F +NLID+PGHVDFS EV+ +L
Sbjct: 62 DEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRV 121
Query: 175 CEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKID 214
+GAL+VVD +GV QT + AL ++ + V+NK+D
Sbjct: 122 TDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVD 161
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 90/151 (59%), Gaps = 7/151 (4%)
Query: 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQK-REMKE--QFLDNMDLERERGITIKLQAAR 141
+RN I AHID GK+T +++L TG + K E+ E +D M+ ERERGITI A
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITI---TAA 68
Query: 142 MRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE 201
+ F + +N+IDTPGHVDF+ EV RS+ +GA++V D+SQGVE Q+ A +
Sbjct: 69 VTTCFWKD-HRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK 127
Query: 202 NNLEIIPVLNKIDLPGAEPSRVAREIEEVIG 232
+ I NK+D GA+ V R ++E +G
Sbjct: 128 YKVPRIAFANKMDKTGADLWLVIRTMQERLG 158
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 445 IEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYE-LPLAEMVGDFFD 503
I EP +++E+ TP+EY+G ++ RRG+ M+ A +I +PLAEM G +
Sbjct: 601 ILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGME--PRGNAQVIRAFVPLAEMFG-YAT 657
Query: 504 QLKSRTKGYASMEYTFLGYKE 524
L+S+T+G S F Y+E
Sbjct: 658 DLRSKTQGRGSFVMFFDHYQE 678
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 56/151 (37%), Gaps = 28/151 (18%)
Query: 330 LLPGYEEATPMVFCGLFP-VDADQFPELRDALEKLQLNDAALKF--EPETSSAMXXXXXX 386
+L E P++ + P ADQ +L AL +L D + PET +
Sbjct: 398 ILESIEVPEPVIDVAIEPKTKADQ-EKLSQALARLAEEDPTFRVSTHPETGQTIISGMGE 456
Query: 387 XXXXXXHMEIVQERLEREYNLSLITTAPSVVYRVNCVNGQTVECSNPSLLPEPGQRRSIE 446
H+EI+ +RL+RE+ + P V YR VE + + G R
Sbjct: 457 L-----HLEIIVDRLKREFKVDANVGKPQVAYRETITKPVDVEG---KFIRQTGGRGQYG 508
Query: 447 EPFVKIELL----------------TPKEYI 461
+K+E L PKEYI
Sbjct: 509 HVKIKVEPLPRGSGFEFVNAIVGGVIPKEYI 539
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 90/151 (59%), Gaps = 7/151 (4%)
Query: 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQK-REMKE--QFLDNMDLERERGITIKLQAAR 141
+RN I AHID GK+T +++L TG + K E+ E +D M+ ERERGITI A
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITI---TAA 68
Query: 142 MRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE 201
+ F + +N+IDTPGHVDF+ EV RS+ +GA++V D+SQGVE Q+ A +
Sbjct: 69 VTTCFWKD-HRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK 127
Query: 202 NNLEIIPVLNKIDLPGAEPSRVAREIEEVIG 232
+ I NK+D GA+ V R ++E +G
Sbjct: 128 YKVPRIAFANKMDKTGADLWLVIRTMQERLG 158
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 445 IEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYE-LPLAEMVGDFFD 503
I EP +++E+ TP+EY+G ++ RRG+ M+ A +I +PLAEM G +
Sbjct: 601 ILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGME--PRGNAQVIRAFVPLAEMFG-YAT 657
Query: 504 QLKSRTKGYASMEYTFLGYKE 524
L+S+T+G S F Y+E
Sbjct: 658 DLRSKTQGRGSFVMFFDHYQE 678
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 56/151 (37%), Gaps = 28/151 (18%)
Query: 330 LLPGYEEATPMVFCGLFP-VDADQFPELRDALEKLQLNDAALKF--EPETSSAMXXXXXX 386
+L E P++ + P ADQ +L AL +L D + PET +
Sbjct: 398 ILESIEVPEPVIDVAIEPKTKADQ-EKLSQALARLAEEDPTFRVSTHPETGQTIISGMGE 456
Query: 387 XXXXXXHMEIVQERLEREYNLSLITTAPSVVYRVNCVNGQTVECSNPSLLPEPGQRRSIE 446
H+EI+ +RL+RE+ + P V YR VE + + G R
Sbjct: 457 L-----HLEIIVDRLKREFKVDANVGKPQVAYRETITKPVDVEG---KFIRQTGGRGQYG 508
Query: 447 EPFVKIELL----------------TPKEYI 461
+K+E L PKEYI
Sbjct: 509 HVKIKVEPLPRGSGFEFVNAIVGGVIPKEYI 539
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 90/151 (59%), Gaps = 7/151 (4%)
Query: 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQK-REMKE--QFLDNMDLERERGITIKLQAAR 141
+RN I AHID GK+T +++L TG + K E+ E +D M+ ERERGITI A
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITI---TAA 68
Query: 142 MRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE 201
+ F + +N+IDTPGHVDF+ EV RS+ +GA++V D+SQGVE Q+ A +
Sbjct: 69 VTTCFWKD-HRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK 127
Query: 202 NNLEIIPVLNKIDLPGAEPSRVAREIEEVIG 232
+ I NK+D GA+ V R ++E +G
Sbjct: 128 YKVPRIAFANKMDKTGADLWLVIRTMQERLG 158
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 445 IEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQ 504
I EP +++E+ TP+EY+G ++ RRG+ M+ ++ + +PLAEM G +
Sbjct: 601 ILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAF-VPLAEMFG-YATD 658
Query: 505 LKSRTKGYASMEYTFLGYKE 524
L+S+T+G S F Y+E
Sbjct: 659 LRSKTQGRGSFVMFFDHYQE 678
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 56/151 (37%), Gaps = 28/151 (18%)
Query: 330 LLPGYEEATPMVFCGLFP-VDADQFPELRDALEKLQLNDAALKF--EPETSSAMXXXXXX 386
+L E P++ + P ADQ +L AL +L D + PET +
Sbjct: 398 ILESIEVPEPVIDVAIEPKTKADQ-EKLSQALARLAEEDPTFRVSTHPETGQTIISGMGE 456
Query: 387 XXXXXXHMEIVQERLEREYNLSLITTAPSVVYRVNCVNGQTVECSNPSLLPEPGQRRSIE 446
H+EI+ +RL+RE+ + P V YR VE + + G R
Sbjct: 457 L-----HLEIIVDRLKREFKVDANVGKPQVAYRETITKPVDVEG---KFIRQTGGRGQYG 508
Query: 447 EPFVKIELL----------------TPKEYI 461
+K+E L PKEYI
Sbjct: 509 HVKIKVEPLPRGSGFEFVNAIVGGVIPKEYI 539
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 90/151 (59%), Gaps = 7/151 (4%)
Query: 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQK-REMKE--QFLDNMDLERERGITIKLQAAR 141
+RN I AHID GK+T +++L TG + K E+ E +D M+ ERERGITI A
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITI---TAA 68
Query: 142 MRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE 201
+ F + +N+IDTPGHVDF+ EV RS+ +GA++V D+SQGVE Q+ A +
Sbjct: 69 VTTCFWKD-HRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK 127
Query: 202 NNLEIIPVLNKIDLPGAEPSRVAREIEEVIG 232
+ I NK+D GA+ V R ++E +G
Sbjct: 128 YKVPRIAFANKMDKTGADLWLVIRTMQERLG 158
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 445 IEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQ 504
I EP +++E+ TP+EY+G ++ RRG+ M+ ++ + +PLAEM G +
Sbjct: 601 ILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAF-VPLAEMFG-YATD 658
Query: 505 LKSRTKGYASMEYTFLGYKE 524
L+S+T+G S F Y+E
Sbjct: 659 LRSKTQGRGSFVMFFDHYQE 678
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 330 LLPGYEEATPMVFCGLFP-VDADQFPELRDALEKLQLNDAALKF--EPETSSAMXXXXXX 386
+L E P++ + P ADQ +L AL +L D + PET +
Sbjct: 398 ILESIEVPEPVIDVAIEPKTKADQ-EKLSQALARLAEEDPTFRVSTHPETGQTIISGMGE 456
Query: 387 XXXXXXHMEIVQERLEREYNLSLITTAPSVVYR 419
H+EI+ +RL+RE+ + P V YR
Sbjct: 457 L-----HLEIIVDRLKREFKVDANVGKPQVAYR 484
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 90/151 (59%), Gaps = 7/151 (4%)
Query: 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQK-REMKE--QFLDNMDLERERGITIKLQAAR 141
+RN I AHID GK+T +++L TG + K E+ E +D M+ ERERGITI A
Sbjct: 12 LRNIVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITI---TAA 68
Query: 142 MRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE 201
+ F + +N+IDTPGHVDF+ EV RS+ +GA++V D+SQGVE Q+ A +
Sbjct: 69 VTTCFWKD-HRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK 127
Query: 202 NNLEIIPVLNKIDLPGAEPSRVAREIEEVIG 232
+ I NK+D GA+ V R ++E +G
Sbjct: 128 YKVPRIAFANKMDKTGADLWLVIRTMQERLG 158
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 445 IEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQ 504
I EP +++E+ TP+EY+G ++ RRG+ M+ ++ + +PLAEM G +
Sbjct: 601 ILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAF-VPLAEMFG-YATD 658
Query: 505 LKSRTKGYASMEYTFLGYKE 524
L+S+T+G S F Y+E
Sbjct: 659 LRSKTQGRGSFVMFFDHYQE 678
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 56/151 (37%), Gaps = 28/151 (18%)
Query: 330 LLPGYEEATPMVFCGLFP-VDADQFPELRDALEKLQLNDAALKF--EPETSSAMXXXXXX 386
+L E P++ + P ADQ +L AL +L D + PET +
Sbjct: 398 ILESIEVPEPVIDVAIEPKTKADQ-EKLSQALARLAEEDPTFRVSTHPETGQTIISGMGE 456
Query: 387 XXXXXXHMEIVQERLEREYNLSLITTAPSVVYRVNCVNGQTVECSNPSLLPEPGQRRSIE 446
H+EI+ +RL+RE+ + P V YR VE + + G R
Sbjct: 457 L-----HLEIIVDRLKREFKVDANVGKPQVAYRETITKPVDVEG---KFIRQTGGRGQYG 508
Query: 447 EPFVKIELL----------------TPKEYI 461
+K+E L PKEYI
Sbjct: 509 HVKIKVEPLPRGSGFEFVNAIVGGVIPKEYI 539
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 89/151 (58%), Gaps = 7/151 (4%)
Query: 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQK-REMKE--QFLDNMDLERERGITIKLQAAR 141
+RN I AHID GK+T +++L TG + K E+ E +D M+ ERERGITI A
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITI---TAA 68
Query: 142 MRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE 201
+ F + +N+ID PGHVDF+ EV RS+ +GA++V D+SQGVE Q+ A +
Sbjct: 69 VTTCFWKD-HRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK 127
Query: 202 NNLEIIPVLNKIDLPGAEPSRVAREIEEVIG 232
+ I NK+D GA+ V R ++E +G
Sbjct: 128 YKVPRIAFANKMDKTGADLWLVIRTMQERLG 158
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 445 IEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYE-LPLAEMVGDFFD 503
I EP +++E+ TP+EY+G ++ RRG+ M+ A +I +PLAEM G +
Sbjct: 601 ILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGME--PRGNAQVIRAFVPLAEMFG-YAT 657
Query: 504 QLKSRTKGYASMEYTFLGYKE 524
L+S+T+G S F Y+E
Sbjct: 658 DLRSKTQGRGSFVMFFDHYQE 678
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 89/151 (58%), Gaps = 7/151 (4%)
Query: 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQK-REMKE--QFLDNMDLERERGITIKLQAAR 141
+RN I AHID GK+T +++L TG + K E+ E +D M+ ERERGITI A
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIAEVHEGAATMDFMEQERERGITI---TAA 68
Query: 142 MRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE 201
+ F + +N+ID PGHVDF+ EV RS+ +GA++V D+SQGVE Q+ A +
Sbjct: 69 VTTCFWKD-HRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK 127
Query: 202 NNLEIIPVLNKIDLPGAEPSRVAREIEEVIG 232
+ I NK+D GA+ V R ++E +G
Sbjct: 128 YKVPRIAFANKMDKTGADLWLVIRTMQERLG 158
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 445 IEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYE-LPLAEMVGDFFD 503
I EP +++E+ TP+EY+G ++ RRG+ M+ A +I +PLAEM G +
Sbjct: 601 ILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGME--PRGNAQVIRAFVPLAEMFG-YAT 657
Query: 504 QLKSRTKGYASMEYTFLGYKE 524
L+S+T+G S F Y+E
Sbjct: 658 DLRSKTQGRGSFVMFFDHYQE 678
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 56/151 (37%), Gaps = 28/151 (18%)
Query: 330 LLPGYEEATPMVFCGLFP-VDADQFPELRDALEKLQLNDAALKF--EPETSSAMXXXXXX 386
+L E P++ + P ADQ +L AL +L D + PET +
Sbjct: 398 ILESIEVPEPVIDVAIEPKTKADQ-EKLSQALARLAEEDPTFRVSTHPETGQTIISGMGE 456
Query: 387 XXXXXXHMEIVQERLEREYNLSLITTAPSVVYRVNCVNGQTVECSNPSLLPEPGQRRSIE 446
H+EI+ +RL+RE+ + P V YR VE + + G R
Sbjct: 457 L-----HLEIIVDRLKREFKVDANVGKPQVAYRETITKPVDVEG---KFIRQTGGRGQYG 508
Query: 447 EPFVKIELL----------------TPKEYI 461
+K+E L PKEYI
Sbjct: 509 HVKIKVEPLPRGSGFEFVNAIVGGVIPKEYI 539
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 89/151 (58%), Gaps = 7/151 (4%)
Query: 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQK-REMKE--QFLDNMDLERERGITIKLQAAR 141
+RN I AHID GK+T +++L TG + K E+ E +D M+ ERERGITI A
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITI---TAA 68
Query: 142 MRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE 201
+ F + +N+ID PGHVDF+ EV RS+ +GA++V D+SQGVE Q+ A +
Sbjct: 69 VTTCFWKD-HRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK 127
Query: 202 NNLEIIPVLNKIDLPGAEPSRVAREIEEVIG 232
+ I NK+D GA+ V R ++E +G
Sbjct: 128 YKVPRIAFANKMDKTGADLWLVIRTMQERLG 158
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 445 IEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYE-LPLAEMVGDFFD 503
I EP +++E+ TP+EY+G ++ RRG+ M+ A +I +PLAEM G +
Sbjct: 601 ILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGME--PRGNAQVIRAFVPLAEMFG-YAT 657
Query: 504 QLKSRTKGYASMEYTFLGYKE 524
L+S+T+G S F Y+E
Sbjct: 658 DLRSKTQGRGSFVMFFDHYQE 678
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 56/151 (37%), Gaps = 28/151 (18%)
Query: 330 LLPGYEEATPMVFCGLFP-VDADQFPELRDALEKLQLNDAALKF--EPETSSAMXXXXXX 386
+L E P++ + P ADQ +L AL +L D + PET +
Sbjct: 398 ILESIEVPEPVIDVAIEPKTKADQ-EKLSQALARLAEEDPTFRVSTHPETGQTIISGMGE 456
Query: 387 XXXXXXHMEIVQERLEREYNLSLITTAPSVVYRVNCVNGQTVECSNPSLLPEPGQRRSIE 446
H+EI+ +RL+RE+ + P V YR VE + + G R
Sbjct: 457 L-----HLEIIVDRLKREFKVDANVGKPQVAYRETITKPVDVEG---KFIRQTGGRGQYG 508
Query: 447 EPFVKIELL----------------TPKEYI 461
+K+E L PKEYI
Sbjct: 509 HVKIKVEPLPRGSGFEFVNAIVGGVIPKEYI 539
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 92/156 (58%), Gaps = 11/156 (7%)
Query: 87 NFSIIAHIDHGKSTLADKLL------QMTGTVQKREM-KEQFLDNMDLERERGITIKLQA 139
F+II+H D GK+TL +KLL QM G+V+ R+ + D M +ERERGI++
Sbjct: 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSV 92
Query: 140 ARMRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLA 199
M++ + + +NL+DTPGH DFS + R L A + AL+V+DA++GVEAQT + +
Sbjct: 93 --MQFPYRDR--VVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVC 148
Query: 200 LENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDC 235
++ +NK+D P V +IE+ + ++C
Sbjct: 149 RMRATPVMTFVNKMDREALHPLDVMADIEQHLQIEC 184
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 87/148 (58%), Gaps = 7/148 (4%)
Query: 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKR---EMKEQFLDNMDLERERGITIKLQAAR 141
I N ++AH+D GK+TL + LL +G + + + DN LER+RGITI Q
Sbjct: 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITI--QTGI 59
Query: 142 MRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE 201
+ +EN +N+IDTPGH+DF EV RSL+ +GA+L++ A GV+AQT + +
Sbjct: 60 TSFQWENTK--VNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK 117
Query: 202 NNLEIIPVLNKIDLPGAEPSRVAREIEE 229
+ I +NKID G + S V ++I+E
Sbjct: 118 MGIPTIFFINKIDQNGIDLSTVYQDIKE 145
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 88/157 (56%), Gaps = 11/157 (7%)
Query: 86 RNFSIIAHIDHGKSTLADKLL------QMTGTVQKREM-KEQFLDNMDLERERGITIKLQ 138
R F+II+H D GK+TL +KLL Q+ GT++ R+ + D +LE++RGI++
Sbjct: 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWXELEKQRGISVTTS 73
Query: 139 AARMRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL 198
+ Y + + +NL+DTPGH DF+ + R+L A + AL V+DA++GVE +T+ +
Sbjct: 74 VXQFPY----KDYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAKGVEPRTIKLXEV 129
Query: 199 ALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDC 235
+ I +NK D + EIE ++ + C
Sbjct: 130 CRLRHTPIXTFINKXDRDTRPSIELLDEIESILRIHC 166
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 89/160 (55%), Gaps = 6/160 (3%)
Query: 81 PASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQK-REMKE--QFLDNMDLERERGITIKL 137
P + RN I AHID GK+T +++L TG K E+ + +D M+ E+ERGITI
Sbjct: 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITS 65
Query: 138 QAARMRY---VFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLA 194
A + + EP +N+IDTPGHVDF+ EV RS+ +GA++V A GV+ Q+
Sbjct: 66 AATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET 125
Query: 195 NVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLD 234
A + + I +NK+D GA +V +I+ +G +
Sbjct: 126 VWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGAN 165
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 447 EPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIY-ELPLAEMVGDFFDQL 505
EP +K+E+ TP+E G ++ RRG K + +E I+ E+PL+EM G + QL
Sbjct: 614 EPIMKVEVETPEENTGDVIGDLSRRRGMLKGQE--SEVTGVKIHAEVPLSEMFG-YATQL 670
Query: 506 KSRTKGYASMEYTFLGYKES 525
+S TKG AS FL Y E+
Sbjct: 671 RSLTKGRASYTMEFLKYDEA 690
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 393 HMEIVQERLEREYNLSLITTAPSVVYR 419
H++I+ +R++RE+N+ P V YR
Sbjct: 465 HLDIIVDRMKREFNVEANVGKPQVAYR 491
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 88/158 (55%), Gaps = 6/158 (3%)
Query: 81 PASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQK-REMKE--QFLDNMDLERERGITIKL 137
P + RN I AHID GK+T +++L TG K E+ + +D M+ E+ERGITI
Sbjct: 5 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITS 64
Query: 138 QAARMRY---VFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLA 194
A + + EP +N+IDTPGHVDF+ EV RS+ +GA++V A GV+ Q+
Sbjct: 65 AATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET 124
Query: 195 NVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIG 232
A + + I +NK+D GA +V +I+ +G
Sbjct: 125 VWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLG 162
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 447 EPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIY-ELPLAEMVGDFFDQL 505
EP +K+E+ TP+E G ++ RRG K + +E I+ E+PL+EM G + QL
Sbjct: 613 EPIMKVEVETPEENTGDVIGDLSRRRGMLKGQE--SEVTGVKIHAEVPLSEMFG-YATQL 669
Query: 506 KSRTKGYASMEYTFLGYKES 525
+S TKG AS FL Y E+
Sbjct: 670 RSLTKGRASYTMEFLKYDEA 689
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 393 HMEIVQERLEREYNLSLITTAPSVVYR 419
H++I+ +R++RE+N+ P V YR
Sbjct: 464 HLDIIVDRMKREFNVEANVGKPQVAYR 490
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 93/158 (58%), Gaps = 13/158 (8%)
Query: 86 RNFSIIAHIDHGKSTLADKLL------QMTGTVQKREMKEQF-LDNMDLERERGITIKLQ 138
R F+II+H D GK+T+ +K+L Q GTV+ R + D M++E++RGI+I
Sbjct: 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISIT-- 71
Query: 139 AARMRYVFENEPFCL-NLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 197
+ M++ + + CL NL+DTPGH DFS + R+L A + L+V+DA++GVE +T +
Sbjct: 72 TSVMQFPYHD---CLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLME 128
Query: 198 LALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDC 235
+ + I+ +NK+D +P + E+E + + C
Sbjct: 129 VTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGC 166
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 93/158 (58%), Gaps = 13/158 (8%)
Query: 86 RNFSIIAHIDHGKSTLADKLL------QMTGTVQKREMKEQF-LDNMDLERERGITIKLQ 138
R F+II+H D GK+T+ +K+L Q GTV+ R + D M++E++RGI+I
Sbjct: 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISIT-- 71
Query: 139 AARMRYVFENEPFCL-NLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 197
+ M++ + + CL NL+DTPGH DFS + R+L A + L+V+DA++GVE +T +
Sbjct: 72 TSVMQFPYHD---CLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLME 128
Query: 198 LALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDC 235
+ + I+ +NK+D +P + E+E + + C
Sbjct: 129 VTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGC 166
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 78/137 (56%), Gaps = 9/137 (6%)
Query: 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQK----REMKEQFLDNMDLERERGITIKLQAAR 141
RN IIAHID GK+T +++L TG + K E Q +D M+ E++RGITI A
Sbjct: 11 RNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQ-MDWMEQEQDRGITITSAATT 69
Query: 142 MRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE 201
+ E +N+IDTPGHVDF+ EV RSL +GA+ V+DA GVE QT A
Sbjct: 70 AAW----EGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATT 125
Query: 202 NNLEIIPVLNKIDLPGA 218
+ I +NK+D GA
Sbjct: 126 YGVPRIVFVNKMDKLGA 142
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 445 IEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQ 504
I EP +K+ + P+EY+G +M RRG M+ ++ Y +PL+EM G +
Sbjct: 600 ILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAY-VPLSEMFG-YATS 657
Query: 505 LKSRTKGYASMEYTFLGYKE 524
L+S T+G + F Y E
Sbjct: 658 LRSNTQGRGTYTMYFDHYAE 677
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 302 GYLSASIRSVADARVGDTITHFNRKADNLLPGYEEATPMVFCGLFPVDADQFPELRDALE 361
G ++A++ + D GDT+ K D +L E P++ + P ++ AL
Sbjct: 372 GDIAAAV-GLKDTGTGDTLC--GEKNDIILESMEFPEPVIHLSVEPKSKADQDKMTQALV 428
Query: 362 KLQLNDAALKFEPETSSAMXXXXXXXXXXXXHMEIVQERLEREYNLSLITTAPSVVYR 419
KLQ D + + H++I+ +R+++E+N+ AP V YR
Sbjct: 429 KLQEEDPTFHAHTDEETGQVIIGGMGEL---HLDILVDRMKKEFNVECNVGAPMVSYR 483
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 89/162 (54%), Gaps = 14/162 (8%)
Query: 81 PASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQK-REMKE--QFLDNMDLERERGITIK- 136
P + RN I AH+D GK+T +++L TG K E+ + D M E+ERGITI
Sbjct: 9 PINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITS 68
Query: 137 ------LQAARMRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEA 190
+ +R +Y + + +N+IDTPGHVDF+ EV RSL +GA++V + GVE
Sbjct: 69 AAVTTFWKGSRGQY----DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEP 124
Query: 191 QTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIG 232
Q+ A + + I +NK+D GA RV +I++ +G
Sbjct: 125 QSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLG 166
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 447 EPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLK 506
EP +K+E++TP++Y+G +M RRG + M+ T S + E+PL EM G + ++
Sbjct: 620 EPIMKVEVVTPEDYMGDVMGDLNRRRGLIQGMED-TVSGKVIRAEVPLGEMFG-YATDVR 677
Query: 507 SRTKGYASMEYTFLGYKES 525
S ++G AS F Y E+
Sbjct: 678 SMSQGRASYSMEFSKYAEA 696
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 306 ASIRSVADARVGDTITHFNRKADNLLPGYEEATPMVFCGLFP-VDADQFPELRDALEKLQ 364
A++ + D GDT+ + +L + P++ + P ADQ ++ AL KL
Sbjct: 386 AALIGMKDVTTGDTLCSIEKPI--ILERMDFPEPVISVAVEPKTKADQ-EKMGIALGKLA 442
Query: 365 LNDAALKFEPETSSAMXXXXXXXXXXXXHMEIVQERLEREYNLSLITTAPSVVYR 419
D + + + + S H++I+ +R++RE+ + P V YR
Sbjct: 443 QEDPSFRVKTDEESGQTIISGMGEL---HLDIIVDRMKREFGVEANIGKPQVAYR 494
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 78/137 (56%), Gaps = 9/137 (6%)
Query: 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQK----REMKEQFLDNMDLERERGITIKLQAAR 141
RN I+AHID GK+T +++L TG + K E Q +D M+ E++RGITI A
Sbjct: 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQ-MDWMEQEQDRGITITSAATT 69
Query: 142 MRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE 201
+ E +N+IDTPGHVDF+ EV RSL +GA+ V+DA GVE QT A
Sbjct: 70 AAW----EGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATT 125
Query: 202 NNLEIIPVLNKIDLPGA 218
+ I +NK+D GA
Sbjct: 126 YGVPRIVFVNKMDKLGA 142
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 445 IEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQ 504
I EP +K+ + P+EY+G +M RRG M+ ++ Y +PL+EM G +
Sbjct: 600 ILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAY-VPLSEMFG-YATS 657
Query: 505 LKSRTKGYASMEYTFLGYKE 524
L+S T+G + F Y E
Sbjct: 658 LRSNTQGRGTYTMYFDHYAE 677
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 302 GYLSASIRSVADARVGDTITHFNRKADNLLPGYEEATPMVFCGLFPVDADQFPELRDALE 361
G ++A++ + D GDT+ K D +L E P++ + P ++ AL
Sbjct: 372 GDIAAAV-GLKDTGTGDTLC--GEKNDIILESMEFPEPVIHLSVEPKSKADQDKMTQALV 428
Query: 362 KLQLNDAALKFEPETSSAMXXXXXXXXXXXXHMEIVQERLEREYNLSLITTAPSVVYR 419
KLQ D + + H++I+ +R+++E+N+ AP V YR
Sbjct: 429 KLQEEDPTFHAHTDEETGQVIIGGMGEL---HLDILVDRMKKEFNVECNVGAPMVSYR 483
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 77/137 (56%), Gaps = 9/137 (6%)
Query: 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQK----REMKEQFLDNMDLERERGITIKLQAAR 141
RN IIAHID GK+T +++L TG + K E Q +D M+ E++RGITI A
Sbjct: 11 RNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQ-MDWMEQEQDRGITITSAATT 69
Query: 142 MRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE 201
+ E +N+IDTPGHVD + EV RSL +GA+ V+DA GVE QT A
Sbjct: 70 AAW----EGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATT 125
Query: 202 NNLEIIPVLNKIDLPGA 218
+ I +NK+D GA
Sbjct: 126 YGVPRIVFVNKMDKLGA 142
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 445 IEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQ 504
I EP +K+ + P+EY+G +M RRG M+ ++ Y +PL+EM G +
Sbjct: 600 ILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAY-VPLSEMFG-YATS 657
Query: 505 LKSRTKGYASMEYTFLGYKE 524
L+S T+G + F Y E
Sbjct: 658 LRSNTQGRGTYTMYFDHYAE 677
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 302 GYLSASIRSVADARVGDTITHFNRKADNLLPGYEEATPMVFCGLFPVDADQFPELRDALE 361
G ++A++ + D GDT+ K D +L E P++ + P ++ AL
Sbjct: 372 GDIAAAV-GLKDTGTGDTLC--GEKNDIILESMEFPEPVIHLSVEPKSKADQDKMTQALV 428
Query: 362 KLQLNDAALKFEPETSSAMXXXXXXXXXXXXHMEIVQERLEREYNLSLITTAPSVVYR 419
KLQ D + + H++I+ +R+++E+N+ AP V YR
Sbjct: 429 KLQEEDPTFHAHTDEETGQVIIGGMGEL---HLDILVDRMKKEFNVECNVGAPMVSYR 483
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 77/137 (56%), Gaps = 9/137 (6%)
Query: 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQK----REMKEQFLDNMDLERERGITIKLQAAR 141
RN I+AHID GK+T +++L TG + K E Q +D M+ E++RGITI A
Sbjct: 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQ-MDWMEQEQDRGITITSAATT 69
Query: 142 MRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE 201
+ E +N+IDTPGHVD + EV RSL +GA+ V+DA GVE QT A
Sbjct: 70 AAW----EGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATT 125
Query: 202 NNLEIIPVLNKIDLPGA 218
+ I +NK+D GA
Sbjct: 126 YGVPRIVFVNKMDKLGA 142
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 445 IEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQ 504
I EP +K+ + P+EY+G +M RRG M+ ++ Y +PL+EM G +
Sbjct: 600 ILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAY-VPLSEMFG-YATS 657
Query: 505 LKSRTKGYASMEYTFLGYKE 524
L+S T+G + F Y E
Sbjct: 658 LRSNTQGRGTYTMYFDHYAE 677
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 302 GYLSASIRSVADARVGDTITHFNRKADNLLPGYEEATPMVFCGLFPVDADQFPELRDALE 361
G ++A++ + D GDT+ K D +L E P++ + P ++ AL
Sbjct: 372 GDIAAAV-GLKDTGTGDTLC--GEKNDIILESMEFPEPVIHLSVEPKSKADQDKMTQALV 428
Query: 362 KLQLNDAALKFEPETSSAMXXXXXXXXXXXXHMEIVQERLEREYNLSLITTAPSVVYR 419
KLQ D + + H++I+ +R+++E+N+ AP V YR
Sbjct: 429 KLQEEDPTFHAHTDEETGQVIIGGMGEL---HLDILVDRMKKEFNVECNVGAPMVSYR 483
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 30/169 (17%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQ----------------FLDNMDLERE 130
N +I H+DHGKSTL +LL G + ++ +KE LD + ERE
Sbjct: 8 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 67
Query: 131 RGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG--- 187
RG+TI L R FE + + +ID PGH DF + + + A+LVV A +G
Sbjct: 68 RGVTINLTFMR----FETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYE 123
Query: 188 ----VEAQTLANVYLALENNL-EIIPVLNKIDLPGAEPSRVAREIEEVI 231
VE QT ++ LA L ++I +NK+DL EP + +E++
Sbjct: 124 AGMSVEGQTREHIILAKTMGLDQLIVAVNKMDL--TEPPYDEKRYKEIV 170
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 74/154 (48%), Gaps = 28/154 (18%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQ-----------KREMKEQF-----LDNMDLERE 130
N +I H+DHGKSTL LL G ++ K KE F LD M ERE
Sbjct: 11 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 70
Query: 131 RGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG--- 187
RGITI L + FE + + +ID PGH DF + + + A+LVV A +G
Sbjct: 71 RGITIDLTFMK----FETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFE 126
Query: 188 ----VEAQTLANVYLALENNLE-IIPVLNKIDLP 216
E QT ++ LA +E II +NK+D P
Sbjct: 127 AGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAP 160
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 74/154 (48%), Gaps = 28/154 (18%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQ-----------KREMKEQF-----LDNMDLERE 130
N +I H+DHGKSTL LL G ++ K KE F LD M ERE
Sbjct: 8 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 67
Query: 131 RGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG--- 187
RGITI L + FE + + +ID PGH DF + + + A+LVV A +G
Sbjct: 68 RGITIDLTFMK----FETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFE 123
Query: 188 ----VEAQTLANVYLALENNLE-IIPVLNKIDLP 216
E QT ++ LA +E II +NK+D P
Sbjct: 124 AGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAP 157
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 17/176 (9%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVF 146
N I HIDHGK+TL+ L ++ T ++ E ++RGITI + + F
Sbjct: 21 NLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPES--------QKRGITIDIGFS----AF 68
Query: 147 ENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEI 206
+ E + + L+D PGH D V + + AL+VVDA +G + QT ++ + N+ I
Sbjct: 69 KLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI 128
Query: 207 IPVLNKIDLPGAEPSRVAREIEEVI-----GLDCTNAILCSAKEGIGINEILNAIV 257
I V+ K D G E + I + I L ++ I SAK G G++E+ N I+
Sbjct: 129 IVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLII 184
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 29/148 (19%)
Query: 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRY 144
+RN I AHID GK+T +++L TG + + F +
Sbjct: 7 LRNIGIAAHIDAGKTTTTERILYYTGRIA---VTTCFWKD-------------------- 43
Query: 145 VFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNL 204
+N+IDTPGHVDF+ EV RS+ +GA++V D+SQGVE Q+ A + +
Sbjct: 44 ------HRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKV 97
Query: 205 EIIPVLNKIDLPGAEPSRVAREIEEVIG 232
I NK+D GA+ V R ++E +G
Sbjct: 98 PRIAFANKMDKTGADLWLVIRTMQERLG 125
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 445 IEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYE-LPLAEMVGDFFD 503
I EP +++E+ TP+EY+G ++ RRG+ M+ A +I +PLAEM G +
Sbjct: 568 ILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGME--PRGNAQVIRAFVPLAEMFG-YAT 624
Query: 504 QLKSRTKGYASMEYTFLGYKE 524
L+S+T+G S F Y+E
Sbjct: 625 DLRSKTQGRGSFVMFFDHYQE 645
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 330 LLPGYEEATPMVFCGLFP-VDADQFPELRDALEKLQLNDAALKF--EPETSSAMXXXXXX 386
+L E P++ + P ADQ +L AL +L D + PET +
Sbjct: 365 ILESIEVPEPVIDVAIEPKTKADQ-EKLSQALARLAEEDPTFRVSTHPETGQTIISGMGE 423
Query: 387 XXXXXXHMEIVQERLEREYNLSLITTAPSVVYR 419
H+EI+ +RL+RE+ + P V YR
Sbjct: 424 L-----HLEIIVDRLKREFKVDANVGKPQVAYR 451
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 84/183 (45%), Gaps = 30/183 (16%)
Query: 63 ATDAELATRVGQDRLLKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREM----- 117
ATD L V Q+ L + N I H+D GKSTL +L +TG V KR M
Sbjct: 23 ATD--LQNEVDQELLKDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIER 80
Query: 118 ------KEQF-----LDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166
KE + LD+ ERE+G T+++ R FE E +L+D PGH +
Sbjct: 81 EAKEAGKESWYLSWALDSTSEEREKGKTVEVG----RAYFETEHRRFSLLDAPGHKGYVT 136
Query: 167 EVSRSLAACEGALLVVDASQG-VEA------QTLANVYLALENNL-EIIPVLNKIDLPGA 218
+ + + +LV+ A +G EA QT + LA + ++ V+NK+D P
Sbjct: 137 NMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSV 196
Query: 219 EPS 221
+ S
Sbjct: 197 QWS 199
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 85/176 (48%), Gaps = 28/176 (15%)
Query: 89 SIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFEN 148
+I+ H+DHGK++L + + + V E GIT + A Y E
Sbjct: 8 TIMGHVDHGKTSLLEYI--RSTKVASGEAG-------------GITQHIGA----YHVET 48
Query: 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIP 208
E + +DTPGH F+ +R A + +LVV A GV QT+ + A + ++
Sbjct: 49 ENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVV 108
Query: 209 VLNKIDLPGAEPSRVAREI-------EEVIGLDCTNAILCSAKEGIGINEILNAIV 257
+NKID P A+P RV E+ EE G + + SAK G GI+E+L+AI+
Sbjct: 109 AVNKIDKPEADPDRVKNELSQYGILPEEWGG--ESQFVHVSAKAGTGIDELLDAIL 162
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 7/132 (5%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKR-EMKEQF-LDNMDLERERGITIKLQAARMRY 144
N I H+DHGK+TL L +T E+K+ +D ER RGITI A + Y
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDKAPEERARGITI--NTAHVEY 70
Query: 145 VFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNL 204
E + +D PGH D+ + A +GA+LVV A+ G QT ++ LA + +
Sbjct: 71 --ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 205 EIIPV-LNKIDL 215
I V +NK+D+
Sbjct: 129 PYIVVFMNKVDM 140
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 7/132 (5%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKR-EMKEQF-LDNMDLERERGITIKLQAARMRY 144
N I H+DHGK+TL L +T E+K+ +D ER RGITI A + Y
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDKAPEERARGITI--NTAHVEY 70
Query: 145 VFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNL 204
E + +D PGH D+ + A +GA+LVV A+ G QT ++ LA + +
Sbjct: 71 --ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 205 EIIPV-LNKIDL 215
I V +NK+D+
Sbjct: 129 PYIVVFMNKVDM 140
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 10/132 (7%)
Query: 87 NFSIIAHIDHGKSTLA---DKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMR 143
N I H+DHGK+TL K+L G + ++ +E +DN ER RGITI AA +
Sbjct: 16 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEE--IDNAPEERARGITI--NAAHVE 71
Query: 144 YVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENN 203
Y + D PGH D+ A +G +LVV A+ G QT ++ LA +
Sbjct: 72 YSTAARHYAHT--DCPGHADYVKNXITGTAPLDGCILVVAANDGPXPQTREHLLLARQIG 129
Query: 204 LE-IIPVLNKID 214
+E ++ +NK D
Sbjct: 130 VEHVVVYVNKAD 141
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 87 NFSIIAHIDHGKSTLA---DKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMR 143
N I H+DHGK+TL K+L G + ++ +E +DN ER RGITI AA +
Sbjct: 5 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEE--IDNAPEERARGITI--NAAHVE 60
Query: 144 YVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENN 203
Y + D PGH D+ + A +G +LVV A+ G QT ++ LA +
Sbjct: 61 YSTAARHYAHT--DCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIG 118
Query: 204 LE-IIPVLNKID 214
+E ++ +NK D
Sbjct: 119 VEHVVVYVNKAD 130
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 7/132 (5%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKR-EMKEQF-LDNMDLERERGITIKLQAARMRY 144
N I H+DHGK+TL L +T E+K+ +D ER RGITI A + Y
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITI--NTAHVEY 70
Query: 145 VFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNL 204
E + +D PGH D+ + A +GA+LVV A+ G QT ++ LA + +
Sbjct: 71 --ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 205 EIIPV-LNKIDL 215
I V +NK+D+
Sbjct: 129 PYIVVFMNKVDM 140
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 82/178 (46%), Gaps = 32/178 (17%)
Query: 89 SIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFEN 148
+I+ H+DHGK+TL D ++ ++ EQ GIT + A Y
Sbjct: 12 TIMGHVDHGKTTLLD-------AIRHSKVTEQ--------EAGGITQHIGA----YQVTV 52
Query: 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIP 208
+ +DTPGH F+ +R + +LVV A GV QT+ + A N+ II
Sbjct: 53 NDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIV 112
Query: 209 VLNKIDLPGAEPSRVAREI-------EEVIGLDCTNAILC--SAKEGIGINEILNAIV 257
+NK+D P A P RV +E+ EE G + I C SAK G++ +L I+
Sbjct: 113 AINKMDKPEANPDRVMQELMEYNLVPEEWGG----DTIFCKLSAKTKEGLDHLLEMIL 166
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 7/132 (5%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKR-EMKEQF-LDNMDLERERGITIKLQAARMRY 144
N I H+DHGK+TL L +T E+K+ +D ER RGITI A + Y
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITI--NTAHVEY 70
Query: 145 VFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNL 204
E + +D PGH D+ + A +GA+LVV A+ G QT ++ LA + +
Sbjct: 71 --ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 205 EIIPV-LNKIDL 215
I V +NK+D+
Sbjct: 129 PYIVVFMNKVDM 140
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 30/168 (17%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQF-----------------LDNMDLER 129
N +I H+D GKST L+ G + KR + E+F LD + ER
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTI-EKFEKEAAELGKGSFKYAWVLDKLKAER 67
Query: 130 ERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG-- 187
ERGITI + + FE + + +ID PGH DF + + + A+L++ G
Sbjct: 68 ERGITIDIAL----WKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEF 123
Query: 188 -----VEAQTLANVYLALENNL-EIIPVLNKIDLPGAEPSRVAREIEE 229
+ QT + LA + ++I +NK+D + SR ++E
Sbjct: 124 EAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKE 171
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 7/132 (5%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKR-EMKEQF-LDNMDLERERGITIKLQAARMRY 144
N I H+DHGK+TL L + E+K+ +D ER RGITI A + Y
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITI--NTAHVEY 70
Query: 145 VFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNL 204
E + +D PGH D+ + A +GA+LVV A+ G QT ++ LA + +
Sbjct: 71 --ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 205 EIIPV-LNKIDL 215
I V +NK+D+
Sbjct: 129 PYIVVFMNKVDM 140
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 7/132 (5%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKR-EMKEQF-LDNMDLERERGITIKLQAARMRY 144
N I H+DHGK+TL L + E+K+ +D ER RGITI A + Y
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITI--NTAHVEY 70
Query: 145 VFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNL 204
E + +D PGH D+ + A +GA+LVV A+ G QT ++ LA + +
Sbjct: 71 --ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 205 EIIPV-LNKIDL 215
I V +NK+D+
Sbjct: 129 PYIVVFMNKVDM 140
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 7/132 (5%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKR-EMKEQF-LDNMDLERERGITIKLQAARMRY 144
N I H+DHGK+TL L + E+K+ +D ER RGITI A + Y
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITI--NTAHVEY 70
Query: 145 VFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNL 204
E + +D PGH D+ + A +GA+LVV A+ G QT ++ LA + +
Sbjct: 71 --ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 205 EIIPV-LNKIDL 215
I V +NK+D+
Sbjct: 129 PYIVVFMNKVDM 140
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 7/132 (5%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKR-EMKEQF-LDNMDLERERGITIKLQAARMRY 144
N I H+DHGK+TL L + E+K+ +D ER RGITI A + Y
Sbjct: 14 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITI--NTAHVEY 71
Query: 145 VFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNL 204
E + +D PGH D+ + A +GA+LVV A+ G QT ++ LA + +
Sbjct: 72 --ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 129
Query: 205 EIIPV-LNKIDL 215
I V +NK+D+
Sbjct: 130 PYIVVFMNKVDM 141
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 7/132 (5%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKR-EMKEQF-LDNMDLERERGITIKLQAARMRY 144
N I H+DHGK+TL L + E+K+ +D ER RGITI A + Y
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITI--NTAHVEY 70
Query: 145 VFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNL 204
E + +D PGH D+ + A +GA+LVV A+ G QT ++ LA + +
Sbjct: 71 --ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 205 EIIPV-LNKIDL 215
I V +NK+D+
Sbjct: 129 PYIVVFMNKVDM 140
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 7/132 (5%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKR-EMKEQF-LDNMDLERERGITIKLQAARMRY 144
N I H+DHGK+TL L + E+K+ +D ER RGITI A + Y
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITI--NTAHVEY 70
Query: 145 VFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNL 204
E + +D PGH D+ + A +GA+LVV A+ G QT ++ LA + +
Sbjct: 71 --ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 205 EIIPV-LNKIDL 215
I V +NK+D+
Sbjct: 129 PYIVVFMNKVDM 140
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 23/149 (15%)
Query: 88 FSIIAHIDHGKSTLADKLLQMTGTVQK-------REMKEQ-----------FLDNMDLER 129
F ++D GKSTL +LL + + + R+ K+ +D + ER
Sbjct: 27 FLTCGNVDDGKSTLIGRLLHDSKXIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAER 86
Query: 130 ERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVE 189
E+GITI + RY F + DTPGH ++ + + C+ A+++VDA GV+
Sbjct: 87 EQGITIDVA---YRY-FSTAKRKFIIADTPGHEQYTRNXATGASTCDLAIILVDARYGVQ 142
Query: 190 AQTLANVYLA-LENNLEIIPVLNKIDLPG 217
QT + Y+A L I+ +NK DL G
Sbjct: 143 TQTRRHSYIASLLGIKHIVVAINKXDLNG 171
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 7/132 (5%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKR-EMKEQF-LDNMDLERERGITIKLQAARMRY 144
N I H+DHGK+TL L + + E+K+ +D ER RGITI A + Y
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENRNVEVKDYGDIDKAREERARGITI--NTAHVEY 70
Query: 145 VFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNL 204
E + +D GH D+ + A +GA+LVV A+ G QT ++ LA + +
Sbjct: 71 --ETAKRHYSHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTREHILLARQVGV 128
Query: 205 EIIPV-LNKIDL 215
I V +NK+D+
Sbjct: 129 RYIVVFMNKVDM 140
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 90 IIAHIDHGKSTLADKLLQMTGTVQKREMKE----------------QFLDNMDLERERGI 133
+ H+D GKST+ +++ G + R M++ LD + ER RG+
Sbjct: 182 VTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGV 241
Query: 134 TIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV----- 188
T+ + + FE++ + D PGH DF + ++ + A+LVVD+SQ
Sbjct: 242 TMDVAST----TFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGF 297
Query: 189 --EAQTLANVYLALENNL-EIIPVLNKIDLPGAEPSRVAREIEEVI 231
QT + YL + EI+ +NK+DL R +EI+ ++
Sbjct: 298 LENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRF-QEIKNIV 342
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 91/219 (41%), Gaps = 27/219 (12%)
Query: 4 ELSSSPAPVLSIKHQTFATLKKPHISSLSHFLSKSHRRCNYSLSISKHSCIFRVSCQSQA 63
E+S + P + +T L K H + ++ F+ R I K F
Sbjct: 226 EVSLTGQPFVMEPSKTVGQLLKEHNAEVTGFI-----RFEVGEGIEKVETDFA------- 273
Query: 64 TDAELATRVGQDRLLKVPASNIR---NFSIIAHIDHGKSTLA---DKLLQMTGTVQKREM 117
AE+A Q + K + N I H+DHGK+TL +L T R
Sbjct: 274 --AEVAAMSKQSHMSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAF 331
Query: 118 KEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEG 177
+ +DN E+ RGITI + + Y + +D PGH D+ + A +G
Sbjct: 332 DQ--IDNAPEEKARGITI--NTSHVEYDTPTRHYAH--VDCPGHADYVKNMITGAAQMDG 385
Query: 178 ALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDL 215
A+LVV A+ G QT ++ L + + II LNK D+
Sbjct: 386 AILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDM 424
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 87 NFSIIAHIDHGKSTLA---DKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMR 143
N I H+DHGK+TL +L T R + +DN E+ RGITI + +
Sbjct: 5 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQ--IDNAPEEKARGITI--NTSHVE 60
Query: 144 YVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENN 203
Y + +D PGH D+ + A +GA+LVV A+ G QT ++ L +
Sbjct: 61 YDTPTRHYAH--VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVG 118
Query: 204 LE-IIPVLNKIDL 215
+ II LNK D+
Sbjct: 119 VPYIIVFLNKCDM 131
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 18/139 (12%)
Query: 89 SIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFEN 148
+I+ H+DHGK+TL DKL R+ + ++ + + G + + + F
Sbjct: 8 TIMGHVDHGKTTLLDKL---------RKTQVAAMEAGGITQHIGAFLVSLPSGEKITF-- 56
Query: 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIP 208
+DTPGH FS +R + +LVV A GV QT+ ++ A + ++ I+
Sbjct: 57 -------LDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVL 109
Query: 209 VLNKIDLPGAEPSRVAREI 227
+NK D A+P +V +E+
Sbjct: 110 AINKCDKAEADPEKVKKEL 128
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 87 NFSIIAHIDHGKSTLA---DKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMR 143
N I H+DHGK+TL +L T R + +DN E+ RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQ--IDNAPEEKARGITI--NTSHVE 68
Query: 144 YVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENN 203
Y + +D PGH D+ + A +GA+LVV A+ G QT ++ L +
Sbjct: 69 YDTPTRHYAH--VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVG 126
Query: 204 LE-IIPVLNKIDL 215
+ II LNK D+
Sbjct: 127 VPYIIVFLNKCDM 139
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 87 NFSIIAHIDHGKSTLA---DKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMR 143
N I H+DHGK+TL +L T R + +DN E+ RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQ--IDNAPEEKARGITI--NTSHVE 68
Query: 144 YVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENN 203
Y + +D PGH D+ + A +GA+LVV A+ G QT ++ L +
Sbjct: 69 YDTPTRHYAH--VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVG 126
Query: 204 LE-IIPVLNKIDL 215
+ II LNK D+
Sbjct: 127 VPYIIVFLNKCDM 139
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 87 NFSIIAHIDHGKSTLA---DKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMR 143
N I H+DHGK+TL +L T R + +DN E+ RGITI + +
Sbjct: 14 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQ--IDNAPEEKARGITI--NTSHVE 69
Query: 144 YVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENN 203
Y + +D PGH D+ + A +GA+LVV A+ G QT ++ L +
Sbjct: 70 YDTPTRHYAH--VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVG 127
Query: 204 LE-IIPVLNKIDL 215
+ II LNK D+
Sbjct: 128 VPYIIVFLNKCDM 140
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 87 NFSIIAHIDHGKSTLA---DKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMR 143
N I H+DHGK+TL +L T R + +DN E+ RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQ--IDNAPEEKARGITI--NTSHVE 68
Query: 144 YVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENN 203
Y + +D PGH D+ + A +GA+LVV A+ G QT ++ L +
Sbjct: 69 YDTPTRHYAH--VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVG 126
Query: 204 LE-IIPVLNKIDL 215
+ II LNK D+
Sbjct: 127 VPYIIVFLNKCDM 139
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 87 NFSIIAHIDHGKSTLA---DKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMR 143
N I H+DHGK+TL +L T R + +DN E+ RGITI + +
Sbjct: 14 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQ--IDNAPEEKARGITI--NTSHVE 69
Query: 144 YVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENN 203
Y + +D PGH D+ + A +GA+LVV A+ G QT ++ L +
Sbjct: 70 YDTPTRHYAH--VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVG 127
Query: 204 LE-IIPVLNKIDL 215
+ II LNK D+
Sbjct: 128 VPYIIVFLNKCDM 140
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 87 NFSIIAHIDHGKSTLA---DKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMR 143
N I H+DHGK+TL +L T R + +DN E+ RGITI + +
Sbjct: 298 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQ--IDNAPEEKARGITI--NTSHVE 353
Query: 144 YVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENN 203
Y + +D PGH D+ + A +GA+LVV A+ G QT ++ L +
Sbjct: 354 YDTPTRHYAH--VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVG 411
Query: 204 LE-IIPVLNKIDL 215
+ II LNK D+
Sbjct: 412 VPYIIVFLNKCDM 424
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 28/160 (17%)
Query: 81 PASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQK-------REMKEQ---------FLDN 124
P N I H+D GKST+ +++ +TG V K RE KE+ LD
Sbjct: 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDT 72
Query: 125 MDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDA 184
ER++G T+++ R FE E ++D PGH F + + + A+LV+ A
Sbjct: 73 NQEERDKGKTVEVG----RAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISA 128
Query: 185 SQG-------VEAQTLANVYLALENNLE-IIPVLNKIDLP 216
+G QT + LA ++ +I ++NK+D P
Sbjct: 129 RKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDP 168
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 92/215 (42%), Gaps = 37/215 (17%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKL--QAARMRY 144
N ++ H+DHGK+TL L TG + D E RGITIK+ A +R
Sbjct: 13 NIGMVGHVDHGKTTLTKAL---TGV---------WTDTHSEELRRGITIKIGFADAEIRR 60
Query: 145 V-----FENEPFC------------LNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG 187
+ P C ++ ID+PGH + + +GA+LV+ A++
Sbjct: 61 CSNCGRYSTSPICPYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIAANEP 120
Query: 188 VEAQTLANVYLALE--NNLEIIPVLNKIDLPGAEPS-RVAREIEEVI-GLDCTNA--ILC 241
+AL+ II NKI+L E + R+I+E I G NA I
Sbjct: 121 CPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIKGTVAENAPIIPI 180
Query: 242 SAKEGIGINEILNAIVKRIPPPSNTAGCPFRALIF 276
SA G I+ ++ AI + IP P + P + L+
Sbjct: 181 SALHGANIDVLVKAIEEFIPTPKRDSNKPPKMLVL 215
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 15/143 (10%)
Query: 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGI---TIKLQ 138
+ IR +++ H GK+TL + LL TG ++R E+ D E + T++
Sbjct: 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTG 65
Query: 139 AA----RMRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLA 194
A R VF L+D PG+ DF E+ +L A + AL+ V A GV+ T
Sbjct: 66 VAPLLFRGHRVF--------LLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTER 117
Query: 195 NVYLALENNLEIIPVLNKIDLPG 217
+A L + V+ K+D G
Sbjct: 118 AWTVAERLGLPRMVVVTKLDKGG 140
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 15/173 (8%)
Query: 364 QLNDAALKFEPETSSAMXXXXXXXXXXXXHMEIVQERLEREYNLSLITTAPSVVYRVNCV 423
Q D L+ EP + + E ++E ++ ++ P + ++
Sbjct: 479 QYGDVWLRLEPASEYGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGFPVMGFKAIVY 538
Query: 424 NGQTVECSNPSLLPEPGQRRSIE-----------EPFVKIELLTPKEYIGSLMELAQDRR 472
NG E + L + + + EP ++++L P+E +G ++ Q RR
Sbjct: 539 NGSYHEVDSSDLAFQIAASLAFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARR 598
Query: 473 GEFKEMKYFTESRASLIY-ELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKE 524
G M+ E S+++ E+PLAE++ +++ L T G + F Y E
Sbjct: 599 GRILGME--QEGALSVVHAEVPLAEVL-EYYKALPGLTGGAGAYTLEFSHYAE 648
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 89/215 (41%), Gaps = 37/215 (17%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKL--QAARMRY 144
N ++ H+DHGK+TL L TG + D E RGITIK+ A +R
Sbjct: 12 NIGMVGHVDHGKTTLTKAL---TGV---------WTDTHSEELRRGITIKIGFADAEIRR 59
Query: 145 V-----FENEPFC------------LNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG 187
+ P C ++ ID PGH + + +GA+LV+ A++
Sbjct: 60 CPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEP 119
Query: 188 VEAQTLANVYLALE--NNLEIIPVLNKIDLPGAEPS-RVAREIEEVI-GLDCTNA--ILC 241
+AL+ II NKI+L E + R+I+E I G NA I
Sbjct: 120 CPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPI 179
Query: 242 SAKEGIGINEILNAIVKRIPPPSNTAGCPFRALIF 276
SA G I+ ++ AI IP P P + L+
Sbjct: 180 SALHGANIDVLVKAIEDFIPTPKRDPNKPPKMLVL 214
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 89/215 (41%), Gaps = 37/215 (17%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKL--QAARMRY 144
N ++ H+DHGK+TL L TG + D E RGITIK+ A +R
Sbjct: 12 NIGMVGHVDHGKTTLTKAL---TGV---------WTDTHSEELRRGITIKIGFADAEIRR 59
Query: 145 V-----FENEPFC------------LNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG 187
+ P C ++ ID PGH + + +GA+LV+ A++
Sbjct: 60 CPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEP 119
Query: 188 VEAQTLANVYLALE--NNLEIIPVLNKIDLPGAEPS-RVAREIEEVI-GLDCTNA--ILC 241
+AL+ II NKI+L E + R+I+E I G NA I
Sbjct: 120 CPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPI 179
Query: 242 SAKEGIGINEILNAIVKRIPPPSNTAGCPFRALIF 276
SA G I+ ++ AI IP P P + L+
Sbjct: 180 SALHGANIDVLVKAIEDFIPTPKRDPNKPPKMLVL 214
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 28/152 (18%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKE----------------QFLDNMDLERE 130
+F ++ H+D GKSTL +LL V + ++++ +D + ERE
Sbjct: 35 SFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERE 94
Query: 131 RGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG--- 187
RG+T+ + + F ++D PGH DF ++ + A+L VD S
Sbjct: 95 RGVTVSICTSH----FSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFE 150
Query: 188 ----VEAQTLANVYLALENNLE-IIPVLNKID 214
++ QT ++ LA + +I +NK+D
Sbjct: 151 SGFDLDGQTKEHMLLASSLGIHNLIIAMNKMD 182
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 28/152 (18%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKE----------------QFLDNMDLERE 130
+F ++ H+D GKSTL +LL V + ++++ +D + ERE
Sbjct: 169 SFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERE 228
Query: 131 RGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG--- 187
RG+T+ + + F ++D PGH DF ++ + A+L VD S
Sbjct: 229 RGVTVSICTSH----FSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFE 284
Query: 188 ----VEAQTLANVYLALENNLE-IIPVLNKID 214
++ QT ++ LA + +I +NK+D
Sbjct: 285 SGFDLDGQTKEHMLLASSLGIHNLIIAMNKMD 316
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 89/215 (41%), Gaps = 37/215 (17%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKL--QAARMRY 144
N + H+DHGK+TL L TG + D E RGITIK+ A +R
Sbjct: 12 NIGXVGHVDHGKTTLTKAL---TGV---------WTDTHSEELRRGITIKIGFADAEIRR 59
Query: 145 V-----FENEPFC------------LNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG 187
+ P C ++ ID PGH + +GA+LV+ A++
Sbjct: 60 CPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVIAANEP 119
Query: 188 V-EAQTLANVY-LALENNLEIIPVLNKIDLPGAEPS-RVAREIEEVI-GLDCTNA--ILC 241
QT ++ L + II NKI+L E + R+I+E I G NA I
Sbjct: 120 CPRPQTREHLXALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPI 179
Query: 242 SAKEGIGINEILNAIVKRIPPPSNTAGCPFRALIF 276
SA G I+ ++ AI IP P P + L+
Sbjct: 180 SALHGANIDVLVKAIEDFIPTPKRDPNKPPKXLVL 214
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 20/115 (17%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKE----------------QFLDNMDLERE 130
+F ++ H+D GKSTL +LL V + ++++ D + ERE
Sbjct: 35 SFVVLGHVDAGKSTLXGRLLYDLNIVNQSQLRKLQRESETXGKSSFKFAWIXDQTNEERE 94
Query: 131 RGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDAS 185
RG+T+ + + F ++D PGH DF ++ + A+L VD S
Sbjct: 95 RGVTVSICTSH----FSTHRANFTIVDAPGHRDFVPNAIXGISQADXAILCVDCS 145
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVF 146
N I H+DHGK+TL + + L RGITI + + Y
Sbjct: 13 NVGTIGHVDHGKTTLTAAITTV-------------LAKTYGGAARGITI--NTSHVEYDT 57
Query: 147 ENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE- 205
+ +D PGH D+ + A +GA+LVV A+ G QT ++ L + +
Sbjct: 58 PTRHYAH--VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPY 115
Query: 206 IIPVLNKIDL 215
II LNK D+
Sbjct: 116 IIVFLNKCDM 125
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 83/207 (40%), Gaps = 42/207 (20%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRY-- 144
N ++ H+DHGK+TL + + + E+K RG+TIKL A
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGIWTSKHSEELK------------RGMTIKLGYAETNIGV 57
Query: 145 --------VFENEPFC--------------LNLIDTPGHVDFSYEVSRSLAACEGALLVV 182
+ EP C ++ ID PGH + A +GA+LVV
Sbjct: 58 CESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVV 117
Query: 183 DASQGV-EAQTLAN-VYLALENNLEIIPVLNKIDLPGAEPS----RVAREIEEVIGLDCT 236
A++ + QT + V L + +I V NK+D+ E + R ++ + +
Sbjct: 118 AANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENV 177
Query: 237 NAILCSAKEGIGINEILNAIVKRIPPP 263
I SA I I+ ++ I + I P
Sbjct: 178 PIIPVSALHKINIDSLIEGIEEYIKTP 204
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 83/207 (40%), Gaps = 42/207 (20%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRY-- 144
N ++ H+DHGK+TL + + + E+K RG+TIKL A
Sbjct: 11 NIGVVGHVDHGKTTLVQAITGIWTSKHSEELK------------RGMTIKLGYAETNIGV 58
Query: 145 --------VFENEPFC--------------LNLIDTPGHVDFSYEVSRSLAACEGALLVV 182
+ EP C ++ ID PGH + A +GA+LVV
Sbjct: 59 CESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVV 118
Query: 183 DASQGV-EAQTLAN-VYLALENNLEIIPVLNKIDLPGAEPS----RVAREIEEVIGLDCT 236
A++ + QT + V L + +I V NK+D+ E + R ++ + +
Sbjct: 119 AANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENV 178
Query: 237 NAILCSAKEGIGINEILNAIVKRIPPP 263
I SA I I+ ++ I + I P
Sbjct: 179 PIIPVSALHKINIDSLIEGIEEYIKTP 205
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 84/202 (41%), Gaps = 37/202 (18%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRY-- 144
N ++ H+DHGK++L L TG + D E RGI+I+L A
Sbjct: 10 NIGMVGHVDHGKTSLTKAL---TGV---------WTDRHSEELRRGISIRLGYADCEIRK 57
Query: 145 -----VFENEPFCLN------------LIDTPGHVDFSYEVSRSLAACEGALLVVDASQG 187
+ +P C N +D+PGH + + +GA+LV+ A++
Sbjct: 58 CPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEP 117
Query: 188 VEAQTLANVYLALE--NNLEIIPVLNKIDLPGAEPSRVARE-IEEVI-GLDCTNA--ILC 241
+ALE +II V NKIDL + + E I+E + G NA I
Sbjct: 118 CPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPI 177
Query: 242 SAKEGIGINEILNAIVKRIPPP 263
SA I+ +L AI IP P
Sbjct: 178 SAHHEANIDVLLKAIQDFIPTP 199
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 29/140 (20%)
Query: 89 SIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARM------ 142
S++ H+DHGK+TL D + V RE GIT + A +
Sbjct: 9 SVLGHVDHGKTTLLDHI--RGSAVASREAG-------------GITQHIGATEIPXDVIE 53
Query: 143 --------RYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLA 194
++ L IDTPGH F+ R A + A+L+VD ++G + QT
Sbjct: 54 GICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQE 113
Query: 195 NVYLALENNLEIIPVLNKID 214
+ + + NKID
Sbjct: 114 ALNILRXYRTPFVVAANKID 133
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 29/140 (20%)
Query: 89 SIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARM------ 142
S++ H+DHGK+TL D + V RE GIT + A +
Sbjct: 9 SVLGHVDHGKTTLLDHI--RGSAVASREAG-------------GITQHIGATEIPMDVIE 53
Query: 143 --------RYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLA 194
++ L IDTPGH F+ R A + A+L+VD ++G + QT
Sbjct: 54 GICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQE 113
Query: 195 NVYLALENNLEIIPVLNKID 214
+ + + NKID
Sbjct: 114 ALNILRMYRTPFVVAANKID 133
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 82/197 (41%), Gaps = 27/197 (13%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVF 146
N ++ H+DHGK+T L+Q + + E+ + E G+ ++ + +
Sbjct: 10 NIGVVGHVDHGKTT----LVQAITGIWTSKHSEETIKLGYAETNIGVC---ESCKKPEAY 62
Query: 147 ENEPFC--------------LNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV-EAQ 191
EP C ++ ID PGH + A +GA+LVV A++ + Q
Sbjct: 63 VTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQ 122
Query: 192 TLAN-VYLALENNLEIIPVLNKIDLPGAEPS----RVAREIEEVIGLDCTNAILCSAKEG 246
T + V L + +I V NK+D+ E + R ++ + + I SA
Sbjct: 123 TREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHK 182
Query: 247 IGINEILNAIVKRIPPP 263
I I+ ++ I + I P
Sbjct: 183 INIDSLIEGIEEYIKTP 199
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 156 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKID 214
+D PGH D+ + A +GA+LVV A+ G QT ++ L + + II LNK D
Sbjct: 21 VDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCD 80
Query: 215 L 215
+
Sbjct: 81 M 81
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 156 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKID 214
+D PGH D+ + A +GA+LVV A+ G QT ++ L + + II LNK D
Sbjct: 21 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCD 80
Query: 215 L 215
+
Sbjct: 81 M 81
>pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|B Chain B, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|C Chain C, Crystal Structure Of Yjeq From Thermotoga Maritima
Length = 301
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 198 LALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGINEILNAIV 257
LA +N LE + V+NK+DL + R RE+EE+ + SAK G+GI E+ +
Sbjct: 110 LAEKNELETVMVINKMDLYDEDDLRKVRELEEIYS-GLYPIVKTSAKTGMGIEELKEYLK 168
Query: 258 KRIPPPSNTAGCPFRALI 275
+I + +G +L+
Sbjct: 169 GKISTMAGLSGVGKSSLL 186
>pdb|1JQS|C Chain C, Fitting Of L11 Protein And Elongation Factor G (Domain G'
And V) In The Cryo-Em Map Of E. Coli 70s Ribosome Bound
With Ef-G And Gmppcp, A Nonhydrolysable Gtp Analog
Length = 68
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 450 VKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYE-LPLAEMVGDFFDQLKSR 508
+++E+ TP+EY+G ++ RRG+ M+ A +I +PLAEM G + L+S+
Sbjct: 1 MRVEVTTPEEYMGDVIGDLNARRGQILGME--PRGNAQVIRAFVPLAEMFG-YATDLRSK 57
Query: 509 TKGYASMEYTF 519
T+G S F
Sbjct: 58 TQGRGSFVMFF 68
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 33/197 (16%)
Query: 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVF 146
N ++ H+DHGK+TL + TG +++ E G+ ++ + +
Sbjct: 10 NIGVVGHVDHGKTTLVQAI---TGIWTSKKLGYA-------ETNIGVC---ESCKKPEAY 56
Query: 147 ENEPFC--------------LNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV-EAQ 191
EP C ++ ID PGH + A +GA+LVV A++ + Q
Sbjct: 57 VTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQ 116
Query: 192 TLAN-VYLALENNLEIIPVLNKIDLPGAEPS----RVAREIEEVIGLDCTNAILCSAKEG 246
T + V L + +I V NK+D+ E + R ++ + + I SA
Sbjct: 117 TREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHK 176
Query: 247 IGINEILNAIVKRIPPP 263
I I+ ++ I + I P
Sbjct: 177 INIDSLIEGIEEYIKTP 193
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
Query: 139 AARMRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLV--VDASQGVEAQTLANV 196
+ R + V + E L+++DT GH ++S + + EG L V ++ ++ E
Sbjct: 57 SYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYRE 116
Query: 197 YLALENNLEIIPVL---NKIDLPGAE-PSRVAREIEEVIGLDCTNAILCSAKEGIGINEI 252
+ + E +P++ NK DLP ++ A+++ G+ I SAK G+++
Sbjct: 117 QIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGI---PFIETSAKTRQGVDDA 173
Query: 253 LNAIVKRI 260
+V+ I
Sbjct: 174 FYTLVREI 181
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Query: 146 FENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY--LALENN 203
E+ F LN+ D G + +G + VVD++ Q L +E
Sbjct: 55 LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER 114
Query: 204 LEIIPVL---NKIDLPGAEPSRVAREIEEVIGLDCTNAIL--CSAKEG----IGINEILN 254
L +L NK DLPGA S RE+ E+ + + + CSA G GI+ +L+
Sbjct: 115 LAGATLLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLD 174
Query: 255 AIVKRI 260
I RI
Sbjct: 175 DISSRI 180
>pdb|2GED|A Chain A, Signal Recognition Particle Receptor Beta-subunit In
Nucleotide-free Dimerized Form
pdb|2GED|B Chain B, Signal Recognition Particle Receptor Beta-subunit In
Nucleotide-free Dimerized Form
Length = 193
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 14/93 (15%)
Query: 153 LNLIDTPGHVDFSYEVSRSLAA----CEGALLVVDASQGVEAQTLANVYL---------A 199
+ L+D PGHV Y++S L +G + +VD++ + T +L +
Sbjct: 93 VTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESS 152
Query: 200 LENNLEIIPVLNKIDLPGAE-PSRVAREIEEVI 231
EN ++I+ NK +L A PS++ +E I
Sbjct: 153 CENGIDILIACNKSELFTARPPSKIKDALESEI 185
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVA 224
+Y V S+ + ++V+DA+QG+ Q L + V NK DL R
Sbjct: 254 NYRVVDSIEKADVVVIVLDATQGITRQDQRXAGLXERRGRASVVVFNKWDLVVHREKRYD 313
Query: 225 REI----EEVIGLDCTNAILCSAKEGIGINEILNA 255
E++ +D + I SA +G I+ ++A
Sbjct: 314 EFTKLFREKLYFIDYSPLIFTSADKGWNIDRXIDA 348
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 203 NLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAIL---CSAKEGIGINEILNAIVKR 259
N+ I NK DL S+ A E +E N++L SAK + +NEI AI K+
Sbjct: 110 NIVIALAGNKADLA----SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKK 165
Query: 260 IP 261
+P
Sbjct: 166 LP 167
>pdb|1NRJ|B Chain B, Signal Recognition Particle Receptor Beta-Subunit In
Complex With The Srx Domain From The Alpha-Subunit
Length = 218
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 14/93 (15%)
Query: 153 LNLIDTPGHVDFSYEVSRSLAA----CEGALLVVDASQGVEAQTLANVYL---------A 199
+ L+D PGHV Y++S L +G + +VD++ + T +L +
Sbjct: 57 VTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESS 116
Query: 200 LENNLEIIPVLNKIDLPGAE-PSRVAREIEEVI 231
EN ++I+ NK +L A PS++ +E I
Sbjct: 117 CENGIDILIACNKSELFTARPPSKIKDALESEI 149
>pdb|3E3X|A Chain A, The C-Terminal Part Of Bipa Protein From Vibrio
Parahaemolyticus Rimd 2210633
Length = 332
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 64/176 (36%), Gaps = 33/176 (18%)
Query: 393 HMEIVQERLEREYNLSLITTAPSVVYRVNCVNGQTVECSNPSLLPEPGQRRSIEEPFVKI 452
H+ I+ E RE L + P V+ + E GQ + EPF +
Sbjct: 92 HLSILIENXRRE-GFELAVSRPEVI-----------------IXEEDGQ---LXEPFETV 130
Query: 453 ELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGY 512
+ +E+ G + E R GE + + R + P ++G F + + T G
Sbjct: 131 TIDVXEEHQGGIXENIGLRXGELXDXAPDGKGRVRXDFIXPSRGLIG-FQTEFXTLTSGS 189
Query: 513 ASMEYTFLGYKESQLIKLDILINGDCVEPLATIVHKDKAYAVGRALTQKLKELIPR 568
+ +TF Y + +NG + A A G+ALT L L R
Sbjct: 190 GLLYHTFDHYGPHXGGNIGQRVNGVLI-----------ANAAGKALTNALFNLQER 234
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 15/129 (11%)
Query: 141 RMRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL 200
R + V + E L+++DT GH ++S + + EG L V + ++ +++
Sbjct: 41 RKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINN---TKSFEDIHQYR 97
Query: 201 E--------NNLEIIPVLNKIDLPGAE-PSRVAREIEEVIGLDCTNAILCSAKEGIGINE 251
E +++ ++ V NK DL SR A+++ G+ I SAK G+ +
Sbjct: 98 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGI---PYIETSAKTRQGVED 154
Query: 252 ILNAIVKRI 260
+V+ I
Sbjct: 155 AFYTLVREI 163
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 76/169 (44%), Gaps = 29/169 (17%)
Query: 97 GKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLI 156
GK++L + L TGT +Q++ N G+T++ + VF + + +NLI
Sbjct: 17 GKTSLFNAL---TGT-------KQYVANWP-----GVTVEKKEG----VFTYKGYTINLI 57
Query: 157 DTPGHVDFSY-----EVSRSLAACEGALLVVDASQGVE-AQTLANVYLALENNLEIIPVL 210
D PG Y +++R A LV+ + V Q+L + LE ++I +
Sbjct: 58 DLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAM 117
Query: 211 NKIDLPGAEPSRVAR-EIEEVIGLDCTNAILCSAKEGIGINEILNAIVK 258
ID ++ R E+++ +G+ + S+ G G+ E+ IV+
Sbjct: 118 TAIDEAKKTGMKIDRYELQKHLGIPV---VFTSSVTGEGLEELKEKIVE 163
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 21/133 (15%)
Query: 146 FENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALL-----------VVDASQ--GVEAQT 192
FE+ F +IDTPG +D +S + A+L + D S+ G +
Sbjct: 209 FEDGYFRYQIIDTPGLLDRP--ISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEE 266
Query: 193 LANVYLALENNLEIIP---VLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGI 249
+++ + + +P V+NKID+ A+ + R +E+ + N I SA +G GI
Sbjct: 267 QIHLFEEVHGEFKDLPFLVVINKIDV--ADEENIKR-LEKFVKEKGLNPIKISALKGTGI 323
Query: 250 NEILNAIVKRIPP 262
+ + I+K + P
Sbjct: 324 DLVKEEIIKTLRP 336
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 47/121 (38%), Gaps = 9/121 (7%)
Query: 148 NEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----N 203
NE + DT G F A++V D ++ TL L+ N
Sbjct: 69 NELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPEN 128
Query: 204 LEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRIP 261
+ + NK DL P + A+E E IG + SAK I I E+ I ++IP
Sbjct: 129 IVMAIAGNKCDLSDIREVPLKDAKEYAESIG---AIVVETSAKNAINIEELFQGISRQIP 185
Query: 262 P 262
P
Sbjct: 186 P 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,977,796
Number of Sequences: 62578
Number of extensions: 647508
Number of successful extensions: 1779
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1537
Number of HSP's gapped (non-prelim): 164
length of query: 646
length of database: 14,973,337
effective HSP length: 105
effective length of query: 541
effective length of database: 8,402,647
effective search space: 4545832027
effective search space used: 4545832027
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)