Query 043429
Match_columns 646
No_of_seqs 633 out of 4133
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 04:58:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043429.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043429hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0481 LepA Membrane GTPase L 100.0 3E-188 5E-193 1453.2 48.3 566 79-644 3-603 (603)
2 KOG0462 Elongation factor-type 100.0 1E-158 3E-163 1249.6 37.2 566 75-641 50-650 (650)
3 PRK05433 GTP-binding protein L 100.0 4E-153 9E-158 1294.1 59.3 562 81-643 3-599 (600)
4 TIGR01393 lepA GTP-binding pro 100.0 2E-152 4E-157 1287.7 59.1 558 84-641 2-594 (595)
5 TIGR01394 TypA_BipA GTP-bindin 100.0 3.3E-73 7.1E-78 640.7 45.7 417 85-537 1-482 (594)
6 PRK10218 GTP-binding protein; 100.0 1.3E-71 2.8E-76 626.7 47.5 420 83-537 3-487 (607)
7 COG0480 FusA Translation elong 100.0 1.1E-71 2.4E-76 630.0 45.4 430 82-526 7-680 (697)
8 KOG0465 Mitochondrial elongati 100.0 1.1E-70 2.4E-75 587.0 29.8 434 79-530 33-714 (721)
9 PRK00007 elongation factor G; 100.0 2.3E-68 4.9E-73 616.3 44.0 432 78-526 3-680 (693)
10 PRK12739 elongation factor G; 100.0 6E-68 1.3E-72 613.1 44.1 430 80-526 3-677 (691)
11 PRK13351 elongation factor G; 100.0 1.8E-67 4E-72 610.6 46.2 431 80-526 3-677 (687)
12 TIGR00484 EF-G translation elo 100.0 1.5E-67 3.3E-72 610.1 45.2 433 77-526 2-677 (689)
13 PRK07560 elongation factor EF- 100.0 1.4E-65 3.1E-70 596.1 38.8 432 82-526 17-702 (731)
14 PRK12740 elongation factor G; 100.0 1.2E-64 2.6E-69 586.1 44.0 419 91-526 1-659 (668)
15 TIGR00490 aEF-2 translation el 100.0 7.8E-63 1.7E-67 571.9 39.6 433 82-526 16-700 (720)
16 COG1217 TypA Predicted membran 100.0 1.6E-62 3.4E-67 510.5 34.6 468 83-600 3-536 (603)
17 PLN00116 translation elongatio 100.0 4.2E-61 9E-66 564.7 41.4 453 82-563 16-824 (843)
18 PTZ00416 elongation factor 2; 100.0 4.4E-59 9.6E-64 546.5 40.7 450 82-563 16-817 (836)
19 KOG0464 Elongation factor G [T 100.0 6.1E-58 1.3E-62 468.2 12.9 433 81-527 33-739 (753)
20 PF06421 LepA_C: GTP-binding p 100.0 1.9E-57 4.1E-62 388.1 6.2 108 534-641 1-108 (108)
21 PRK00741 prfC peptide chain re 100.0 9.1E-49 2E-53 437.0 35.2 323 83-422 8-471 (526)
22 TIGR00503 prfC peptide chain r 100.0 3.5E-48 7.5E-53 432.4 34.0 320 83-419 9-469 (527)
23 KOG0469 Elongation factor 2 [T 100.0 1.2E-45 2.7E-50 385.2 29.6 463 82-568 16-834 (842)
24 COG4108 PrfC Peptide chain rel 100.0 1.7E-41 3.6E-46 352.3 23.2 320 84-418 11-469 (528)
25 KOG0467 Translation elongation 100.0 2E-36 4.3E-41 330.9 18.8 468 80-563 4-866 (887)
26 KOG0468 U5 snRNP-specific prot 100.0 9.2E-35 2E-39 312.4 26.9 460 82-559 125-933 (971)
27 COG5256 TEF1 Translation elong 100.0 5.4E-30 1.2E-34 267.4 22.1 238 85-328 7-320 (428)
28 PLN00043 elongation factor 1-a 100.0 1.2E-29 2.5E-34 279.2 20.8 234 84-323 6-317 (447)
29 PRK12317 elongation factor 1-a 100.0 2.5E-29 5.5E-34 276.8 23.0 237 83-325 4-311 (425)
30 PTZ00141 elongation factor 1- 100.0 3.7E-29 8E-34 275.4 21.9 234 85-324 7-318 (446)
31 TIGR00483 EF-1_alpha translati 100.0 1.1E-28 2.4E-33 271.6 22.3 237 83-325 5-313 (426)
32 PRK12736 elongation factor Tu; 100.0 1.4E-28 3E-33 267.8 22.5 237 83-324 10-297 (394)
33 PRK05306 infB translation init 100.0 4.1E-28 9E-33 279.7 26.2 390 83-523 288-768 (787)
34 PLN03126 Elongation factor Tu; 100.0 3.1E-28 6.8E-33 269.0 23.1 237 83-324 79-376 (478)
35 cd01890 LepA LepA subfamily. 100.0 2.4E-28 5.3E-33 236.4 19.3 178 86-263 1-179 (179)
36 CHL00071 tufA elongation facto 100.0 4E-28 8.7E-33 265.4 23.1 237 83-324 10-307 (409)
37 TIGR02034 CysN sulfate adenyly 100.0 3E-28 6.5E-33 266.1 21.9 232 87-325 2-301 (406)
38 TIGR00485 EF-Tu translation el 100.0 5.7E-28 1.2E-32 263.3 22.4 236 83-323 10-296 (394)
39 PRK05124 cysN sulfate adenylyl 100.0 9.7E-28 2.1E-32 266.1 22.9 236 83-325 25-329 (474)
40 PRK12735 elongation factor Tu; 100.0 1.2E-27 2.6E-32 260.6 23.1 237 83-324 10-299 (396)
41 PF00009 GTP_EFTU: Elongation 100.0 3.3E-28 7.2E-33 238.6 14.1 176 83-262 1-188 (188)
42 PRK00049 elongation factor Tu; 100.0 2.6E-27 5.6E-32 257.9 22.1 237 83-324 10-299 (396)
43 TIGR00487 IF-2 translation ini 100.0 8.9E-27 1.9E-31 263.1 26.6 389 84-522 86-565 (587)
44 PLN03127 Elongation factor Tu; 99.9 1.4E-26 3.1E-31 254.6 23.4 239 80-323 56-349 (447)
45 cd04169 RF3 RF3 subfamily. Pe 99.9 8E-27 1.7E-31 240.7 18.8 176 84-263 1-267 (267)
46 cd04168 TetM_like Tet(M)-like 99.9 8.9E-27 1.9E-31 236.5 18.8 173 87-263 1-237 (237)
47 cd01886 EF-G Elongation factor 99.9 1.2E-26 2.6E-31 239.7 18.7 142 87-232 1-145 (270)
48 PTZ00327 eukaryotic translatio 99.9 4.8E-26 1E-30 250.0 20.0 227 85-324 34-351 (460)
49 PRK04000 translation initiatio 99.9 1.3E-25 2.8E-30 245.4 21.7 229 85-326 9-320 (411)
50 cd01885 EF2 EF2 (for archaea a 99.9 5.8E-26 1.3E-30 227.7 17.1 178 86-263 1-222 (222)
51 PRK05506 bifunctional sulfate 99.9 1.6E-25 3.5E-30 257.7 22.5 237 82-326 21-326 (632)
52 CHL00189 infB translation init 99.9 1.5E-25 3.2E-30 256.4 21.6 185 83-283 242-434 (742)
53 PRK10512 selenocysteinyl-tRNA- 99.9 3.4E-25 7.3E-30 252.0 22.9 220 87-323 2-259 (614)
54 TIGR03680 eif2g_arch translati 99.9 3.6E-25 7.9E-30 242.0 21.6 227 85-324 4-313 (406)
55 TIGR00475 selB selenocysteine- 99.9 2.2E-24 4.8E-29 244.7 22.0 218 87-321 2-258 (581)
56 cd01884 EF_Tu EF-Tu subfamily. 99.9 1.3E-24 2.8E-29 214.2 16.1 174 86-263 3-195 (195)
57 cd01891 TypA_BipA TypA (tyrosi 99.9 3.8E-24 8.3E-29 210.7 18.2 176 84-263 1-194 (194)
58 COG0050 TufB GTPases - transla 99.9 4.1E-24 8.8E-29 212.7 18.3 235 85-324 12-297 (394)
59 cd04166 CysN_ATPS CysN_ATPS su 99.9 3.3E-24 7.2E-29 213.7 15.3 161 87-251 1-184 (208)
60 COG2895 CysN GTPases - Sulfate 99.9 7.8E-24 1.7E-28 215.8 17.7 236 84-327 5-309 (431)
61 cd01889 SelB_euk SelB subfamil 99.9 1.4E-23 3E-28 206.4 15.9 170 87-264 2-189 (192)
62 cd01883 EF1_alpha Eukaryotic e 99.9 5.6E-24 1.2E-28 213.8 13.4 160 87-250 1-194 (219)
63 cd04170 EF-G_bact Elongation f 99.9 1.7E-23 3.7E-28 216.7 17.3 142 87-232 1-145 (268)
64 KOG0458 Elongation factor 1 al 99.9 7.3E-23 1.6E-27 220.9 20.2 235 82-322 174-488 (603)
65 KOG0084 GTPase Rab1/YPT1, smal 99.9 2.4E-23 5.2E-28 197.3 14.2 160 82-260 6-171 (205)
66 COG0532 InfB Translation initi 99.9 9.5E-23 2.1E-27 220.1 19.6 205 85-323 5-217 (509)
67 cd01888 eIF2_gamma eIF2-gamma 99.9 6.5E-23 1.4E-27 203.6 14.8 167 86-264 1-202 (203)
68 KOG0092 GTPase Rab5/YPT51 and 99.9 7.3E-23 1.6E-27 193.4 13.6 161 85-265 5-171 (200)
69 cd04167 Snu114p Snu114p subfam 99.9 2E-22 4.3E-27 201.6 17.0 178 86-263 1-213 (213)
70 cd00881 GTP_translation_factor 99.9 7E-22 1.5E-26 192.0 17.8 173 87-263 1-189 (189)
71 COG3276 SelB Selenocysteine-sp 99.9 4.8E-22 1E-26 209.5 17.0 220 87-324 2-256 (447)
72 KOG0460 Mitochondrial translat 99.9 3E-22 6.6E-27 202.8 14.5 235 85-324 54-341 (449)
73 KOG1145 Mitochondrial translat 99.9 8.3E-22 1.8E-26 210.3 17.9 181 84-283 152-340 (683)
74 KOG0078 GTP-binding protein SE 99.9 2.1E-21 4.5E-26 186.9 16.5 163 81-263 8-176 (207)
75 cd01864 Rab19 Rab19 subfamily. 99.9 2.1E-21 4.5E-26 185.5 15.7 157 84-259 2-164 (165)
76 cd04171 SelB SelB subfamily. 99.9 2.6E-21 5.5E-26 183.6 15.3 157 87-258 2-163 (164)
77 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.9 3.5E-21 7.5E-26 181.9 15.4 162 84-265 21-189 (221)
78 COG1160 Predicted GTPases [Gen 99.9 2.8E-21 6E-26 205.7 16.5 222 5-259 108-349 (444)
79 cd04120 Rab12 Rab12 subfamily. 99.9 3.7E-21 8.1E-26 190.7 15.8 155 87-260 2-162 (202)
80 TIGR00491 aIF-2 translation in 99.9 6.7E-21 1.5E-25 215.1 19.5 205 85-322 4-265 (590)
81 cd00877 Ran Ran (Ras-related n 99.9 4.5E-21 9.7E-26 184.1 15.3 155 87-261 2-159 (166)
82 cd04165 GTPBP1_like GTPBP1-lik 99.9 3.9E-21 8.5E-26 193.4 14.0 175 87-263 1-224 (224)
83 cd04124 RabL2 RabL2 subfamily. 99.9 7.8E-21 1.7E-25 181.2 15.3 154 87-261 2-158 (161)
84 cd04160 Arfrp1 Arfrp1 subfamil 99.9 6E-21 1.3E-25 182.3 14.4 158 87-259 1-167 (167)
85 KOG0098 GTPase Rab2, small G p 99.9 7.4E-21 1.6E-25 178.2 14.2 158 84-261 5-168 (216)
86 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 1.2E-20 2.7E-25 186.8 16.7 156 87-261 2-168 (201)
87 cd04121 Rab40 Rab40 subfamily. 99.9 1.1E-20 2.4E-25 185.4 16.2 158 84-261 5-167 (189)
88 cd04122 Rab14 Rab14 subfamily. 99.9 1E-20 2.3E-25 181.0 15.5 156 85-260 2-163 (166)
89 cd04133 Rop_like Rop subfamily 99.8 1.3E-20 2.8E-25 182.9 15.8 158 86-263 2-175 (176)
90 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.7E-20 3.8E-25 179.0 16.5 158 87-260 2-165 (168)
91 PRK04004 translation initiatio 99.8 1.7E-20 3.8E-25 212.6 19.1 184 85-283 6-245 (586)
92 cd01867 Rab8_Rab10_Rab13_like 99.8 1.5E-20 3.2E-25 180.2 15.8 157 84-260 2-164 (167)
93 cd04106 Rab23_lke Rab23-like s 99.8 2E-20 4.3E-25 177.7 16.0 153 87-259 2-161 (162)
94 cd04136 Rap_like Rap-like subf 99.8 1.7E-20 3.8E-25 178.0 15.6 154 86-260 2-162 (163)
95 KOG0394 Ras-related GTPase [Ge 99.8 6.1E-21 1.3E-25 178.5 12.0 162 83-263 7-180 (210)
96 KOG0080 GTPase Rab18, small G 99.8 1.1E-20 2.4E-25 172.5 12.8 158 84-261 10-174 (209)
97 cd01865 Rab3 Rab3 subfamily. 99.8 2E-20 4.4E-25 178.9 15.4 156 86-261 2-163 (165)
98 PLN03071 GTP-binding nuclear p 99.8 1.8E-20 4E-25 188.3 15.6 157 84-261 12-172 (219)
99 cd01875 RhoG RhoG subfamily. 99.8 3.2E-20 7E-25 182.4 16.4 159 86-264 4-180 (191)
100 cd04145 M_R_Ras_like M-Ras/R-R 99.8 4.9E-20 1.1E-24 175.2 17.0 154 86-260 3-163 (164)
101 cd04119 RJL RJL (RabJ-Like) su 99.8 3.2E-20 6.9E-25 176.6 15.7 154 87-260 2-166 (168)
102 cd04127 Rab27A Rab27a subfamil 99.8 3E-20 6.4E-25 180.0 15.6 157 84-260 3-176 (180)
103 smart00173 RAS Ras subfamily o 99.8 3.6E-20 7.9E-25 176.4 15.9 154 87-261 2-162 (164)
104 cd04113 Rab4 Rab4 subfamily. 99.8 3E-20 6.4E-25 176.6 15.0 154 87-260 2-161 (161)
105 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 3.3E-20 7E-25 177.3 15.4 156 85-260 2-163 (166)
106 cd04175 Rap1 Rap1 subgroup. T 99.8 4.4E-20 9.5E-25 176.1 16.2 154 86-260 2-162 (164)
107 cd04138 H_N_K_Ras_like H-Ras/N 99.8 5.6E-20 1.2E-24 173.8 16.5 154 86-260 2-161 (162)
108 PTZ00369 Ras-like protein; Pro 99.8 3.6E-20 7.8E-25 181.7 15.6 156 86-262 6-168 (189)
109 cd03709 lepA_C lepA_C: This fa 99.8 7.8E-21 1.7E-25 159.9 9.2 80 447-526 1-80 (80)
110 cd01868 Rab11_like Rab11-like. 99.8 4.7E-20 1E-24 175.9 15.6 156 85-260 3-164 (165)
111 TIGR03594 GTPase_EngA ribosome 99.8 4.6E-20 1E-24 203.7 17.9 223 5-260 103-343 (429)
112 cd04114 Rab30 Rab30 subfamily. 99.8 7.2E-20 1.6E-24 175.2 16.5 158 83-260 5-168 (169)
113 smart00176 RAN Ran (Ras-relate 99.8 3.3E-20 7.2E-25 183.6 14.1 151 91-261 1-154 (200)
114 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 6.5E-20 1.4E-24 177.2 15.7 156 86-262 3-165 (172)
115 PRK03003 GTP-binding protein D 99.8 7.5E-20 1.6E-24 204.0 18.2 223 6-261 143-382 (472)
116 KOG0087 GTPase Rab11/YPT3, sma 99.8 2.4E-20 5.2E-25 178.7 12.0 159 82-260 11-175 (222)
117 cd04157 Arl6 Arl6 subfamily. 99.8 4.5E-20 9.7E-25 175.1 14.0 149 87-258 1-161 (162)
118 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 6.3E-20 1.4E-24 177.0 15.0 155 87-261 2-165 (170)
119 smart00175 RAB Rab subfamily o 99.8 7.2E-20 1.6E-24 173.8 15.2 155 87-261 2-162 (164)
120 cd04144 Ras2 Ras2 subfamily. 99.8 5.6E-20 1.2E-24 180.5 14.8 155 87-262 1-164 (190)
121 cd04158 ARD1 ARD1 subfamily. 99.8 5.4E-20 1.2E-24 177.0 14.4 154 87-262 1-162 (169)
122 cd04110 Rab35 Rab35 subfamily. 99.8 7.6E-20 1.6E-24 181.0 15.9 158 84-261 5-167 (199)
123 cd04116 Rab9 Rab9 subfamily. 99.8 1.1E-19 2.3E-24 174.4 16.3 157 85-260 5-170 (170)
124 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 9.3E-20 2E-24 177.9 16.0 155 85-259 5-178 (182)
125 PLN00223 ADP-ribosylation fact 99.8 9.3E-20 2E-24 177.7 15.9 152 85-261 17-178 (181)
126 cd01860 Rab5_related Rab5-rela 99.8 9.7E-20 2.1E-24 173.1 15.7 156 86-261 2-163 (163)
127 cd01866 Rab2 Rab2 subfamily. 99.8 1E-19 2.2E-24 174.7 15.8 156 85-260 4-165 (168)
128 cd03710 BipA_TypA_C BipA_TypA_ 99.8 2.1E-20 4.6E-25 156.9 9.6 78 447-525 1-78 (79)
129 cd04115 Rab33B_Rab33A Rab33B/R 99.8 1.1E-19 2.4E-24 174.8 15.9 156 85-260 2-168 (170)
130 cd04117 Rab15 Rab15 subfamily. 99.8 1.3E-19 2.8E-24 173.0 16.0 153 87-259 2-160 (161)
131 cd04128 Spg1 Spg1p. Spg1p (se 99.8 6.7E-20 1.5E-24 178.9 14.2 154 87-261 2-166 (182)
132 cd04176 Rap2 Rap2 subgroup. T 99.8 1.6E-19 3.5E-24 171.9 16.3 154 86-260 2-162 (163)
133 cd04154 Arl2 Arl2 subfamily. 99.8 9.4E-20 2E-24 175.8 14.8 149 85-258 14-172 (173)
134 cd01861 Rab6 Rab6 subfamily. 99.8 8.6E-20 1.9E-24 173.1 14.2 154 86-259 1-160 (161)
135 cd04150 Arf1_5_like Arf1-Arf5- 99.8 1.3E-19 2.7E-24 172.8 15.2 147 87-258 2-158 (159)
136 cd04112 Rab26 Rab26 subfamily. 99.8 9.9E-20 2.2E-24 178.8 14.8 158 87-263 2-165 (191)
137 PLN03110 Rab GTPase; Provision 99.8 1.6E-19 3.4E-24 181.1 16.2 160 83-262 10-175 (216)
138 cd04109 Rab28 Rab28 subfamily. 99.8 1.5E-19 3.2E-24 181.1 15.9 156 87-262 2-167 (215)
139 cd04134 Rho3 Rho3 subfamily. 99.8 1.3E-19 2.8E-24 177.8 15.1 160 86-265 1-178 (189)
140 cd04140 ARHI_like ARHI subfami 99.8 2.5E-19 5.5E-24 171.3 16.2 153 86-259 2-163 (165)
141 cd01862 Rab7 Rab7 subfamily. 99.8 2.1E-19 4.6E-24 172.2 15.5 155 87-260 2-166 (172)
142 cd04101 RabL4 RabL4 (Rab-like4 99.8 2.7E-19 5.8E-24 170.3 15.9 156 87-260 2-163 (164)
143 cd04151 Arl1 Arl1 subfamily. 99.8 1.6E-19 3.5E-24 171.4 14.3 147 87-258 1-157 (158)
144 cd04149 Arf6 Arf6 subfamily. 99.8 1.6E-19 3.4E-24 173.9 14.4 148 86-258 10-167 (168)
145 cd01871 Rac1_like Rac1-like su 99.8 2.2E-19 4.8E-24 173.9 15.5 154 86-259 2-173 (174)
146 cd01874 Cdc42 Cdc42 subfamily. 99.8 2.2E-19 4.8E-24 174.0 15.4 154 86-259 2-173 (175)
147 cd04131 Rnd Rnd subfamily. Th 99.8 2.4E-19 5.1E-24 174.4 15.4 154 86-259 2-174 (178)
148 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 2.5E-19 5.4E-24 181.0 16.0 156 85-260 13-187 (232)
149 cd01894 EngA1 EngA1 subfamily. 99.8 1.8E-19 3.9E-24 169.5 14.0 149 89-260 1-157 (157)
150 cd04126 Rab20 Rab20 subfamily. 99.8 3.1E-19 6.7E-24 179.2 16.1 152 87-260 2-189 (220)
151 cd04123 Rab21 Rab21 subfamily. 99.8 3.4E-19 7.3E-24 168.5 15.5 154 87-260 2-161 (162)
152 cd01892 Miro2 Miro2 subfamily. 99.8 2.6E-19 5.6E-24 172.5 14.9 161 84-262 3-167 (169)
153 cd04132 Rho4_like Rho4-like su 99.8 3.5E-19 7.7E-24 173.8 15.9 155 87-261 2-167 (187)
154 cd04177 RSR1 RSR1 subgroup. R 99.8 3.5E-19 7.5E-24 170.9 15.5 155 87-261 3-164 (168)
155 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 2.7E-19 5.8E-24 174.6 14.9 158 86-261 4-170 (183)
156 cd04146 RERG_RasL11_like RERG/ 99.8 2.1E-19 4.6E-24 171.6 13.8 153 87-260 1-163 (165)
157 cd01897 NOG NOG1 is a nucleola 99.8 2.6E-19 5.6E-24 171.2 14.3 153 86-260 1-167 (168)
158 KOG0079 GTP-binding protein H- 99.8 1.3E-19 2.9E-24 163.2 11.2 158 84-261 7-169 (198)
159 smart00177 ARF ARF-like small 99.8 4.4E-19 9.5E-24 171.9 15.8 151 85-260 13-173 (175)
160 PLN03108 Rab family protein; P 99.8 4.6E-19 9.9E-24 177.0 16.3 159 83-261 4-168 (210)
161 cd04125 RabA_like RabA-like su 99.8 4.2E-19 9.1E-24 173.7 15.7 155 87-261 2-162 (188)
162 KOG0093 GTPase Rab3, small G p 99.8 3.9E-19 8.5E-24 160.1 14.0 159 83-261 19-183 (193)
163 cd04147 Ras_dva Ras-dva subfam 99.8 2.5E-19 5.5E-24 177.0 14.2 158 87-262 1-164 (198)
164 KOG0086 GTPase Rab4, small G p 99.8 2.3E-19 5E-24 162.4 12.4 159 83-259 7-169 (214)
165 cd01863 Rab18 Rab18 subfamily. 99.8 5.7E-19 1.2E-23 167.6 15.9 154 87-260 2-161 (161)
166 KOG0461 Selenocysteine-specifi 99.8 6.5E-19 1.4E-23 178.8 17.0 182 86-275 8-207 (522)
167 PF00679 EFG_C: Elongation fac 99.8 7.5E-20 1.6E-24 157.3 8.4 88 444-532 1-88 (89)
168 smart00838 EFG_C Elongation fa 99.8 8.9E-20 1.9E-24 155.5 8.7 80 445-526 1-80 (85)
169 cd04142 RRP22 RRP22 subfamily. 99.8 4.4E-19 9.6E-24 175.5 14.9 156 87-262 2-175 (198)
170 KOG0095 GTPase Rab30, small G 99.8 3.7E-19 7.9E-24 160.5 12.9 158 83-260 5-168 (213)
171 cd00154 Rab Rab family. Rab G 99.8 6.6E-19 1.4E-23 165.0 15.3 151 87-257 2-158 (159)
172 cd04143 Rhes_like Rhes_like su 99.8 4.9E-19 1.1E-23 180.9 15.6 159 87-264 2-174 (247)
173 cd00878 Arf_Arl Arf (ADP-ribos 99.8 5.5E-19 1.2E-23 167.3 14.5 150 87-258 1-157 (158)
174 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 8.1E-19 1.7E-23 169.7 15.5 149 85-258 15-173 (174)
175 COG5257 GCD11 Translation init 99.8 3.5E-19 7.6E-24 179.8 13.2 182 85-278 10-219 (415)
176 cd04111 Rab39 Rab39 subfamily. 99.8 8.9E-19 1.9E-23 175.0 16.1 156 86-261 3-166 (211)
177 PRK00093 GTP-binding protein D 99.8 1.2E-18 2.5E-23 192.9 18.7 191 51-259 136-342 (435)
178 cd04118 Rab24 Rab24 subfamily. 99.8 1E-18 2.2E-23 171.5 16.1 155 87-260 2-165 (193)
179 cd04139 RalA_RalB RalA/RalB su 99.8 9.6E-19 2.1E-23 165.9 15.3 153 87-260 2-161 (164)
180 PLN03118 Rab family protein; P 99.8 1.2E-18 2.6E-23 173.9 16.8 157 85-262 14-178 (211)
181 cd00879 Sar1 Sar1 subfamily. 99.8 6.7E-19 1.5E-23 172.3 14.6 151 85-260 19-190 (190)
182 cd01898 Obg Obg subfamily. Th 99.8 9.6E-19 2.1E-23 167.4 15.2 153 87-259 2-169 (170)
183 PTZ00133 ADP-ribosylation fact 99.8 1E-18 2.2E-23 170.6 15.5 151 85-260 17-177 (182)
184 cd01893 Miro1 Miro1 subfamily. 99.8 1.1E-18 2.5E-23 167.1 15.6 155 87-261 2-164 (166)
185 PRK09518 bifunctional cytidyla 99.8 9.1E-19 2E-23 204.2 17.2 226 4-262 378-622 (712)
186 PRK15494 era GTPase Era; Provi 99.8 1.2E-18 2.6E-23 186.0 16.4 160 83-262 50-217 (339)
187 cd04161 Arl2l1_Arl13_like Arl2 99.8 8.4E-19 1.8E-23 168.5 13.7 150 87-258 1-166 (167)
188 cd04097 mtEFG1_C mtEFG1_C: C-t 99.8 3.1E-19 6.6E-24 149.6 9.3 77 447-525 1-77 (78)
189 smart00178 SAR Sar1p-like memb 99.8 1E-18 2.2E-23 170.7 14.5 150 85-259 17-183 (184)
190 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 9.5E-19 2.1E-23 167.7 13.6 150 88-258 2-163 (164)
191 smart00174 RHO Rho (Ras homolo 99.8 1.4E-18 3E-23 167.2 14.8 154 88-261 1-172 (174)
192 cd04156 ARLTS1 ARLTS1 subfamil 99.8 1.3E-18 2.9E-23 164.8 13.9 148 87-258 1-159 (160)
193 cd04135 Tc10 TC10 subfamily. 99.8 1.8E-18 3.8E-23 166.5 14.9 154 87-260 2-173 (174)
194 TIGR00436 era GTP-binding prot 99.8 2.2E-18 4.7E-23 178.8 16.6 155 87-262 2-165 (270)
195 PRK04213 GTP-binding protein; 99.8 2.5E-18 5.4E-23 170.0 16.1 155 84-263 8-194 (201)
196 cd04137 RheB Rheb (Ras Homolog 99.8 1.9E-18 4.1E-23 167.5 14.9 154 86-260 2-162 (180)
197 COG1160 Predicted GTPases [Gen 99.8 1.7E-18 3.8E-23 184.4 15.7 153 86-261 4-165 (444)
198 cd01895 EngA2 EngA2 subfamily. 99.8 3.6E-18 7.7E-23 162.9 16.4 156 85-258 2-172 (174)
199 cd03711 Tet_C Tet_C: C-terminu 99.8 5.7E-19 1.2E-23 148.0 9.5 77 447-525 1-77 (78)
200 PF00071 Ras: Ras family; Int 99.8 2.3E-18 4.9E-23 163.6 14.8 154 87-260 1-160 (162)
201 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 2.3E-18 4.9E-23 173.1 15.5 155 86-260 2-175 (222)
202 PRK03003 GTP-binding protein D 99.8 2.9E-18 6.3E-23 191.3 18.0 156 84-262 37-200 (472)
203 cd04096 eEF2_snRNP_like_C eEF2 99.8 3.9E-19 8.5E-24 149.7 8.2 78 447-525 1-79 (80)
204 cd01870 RhoA_like RhoA-like su 99.8 2.2E-18 4.8E-23 166.0 14.5 155 86-260 2-174 (175)
205 cd01873 RhoBTB RhoBTB subfamil 99.8 2.9E-18 6.3E-23 169.2 15.7 157 86-259 3-194 (195)
206 cd04130 Wrch_1 Wrch-1 subfamil 99.8 2.5E-18 5.4E-23 165.9 14.7 151 87-257 2-170 (173)
207 cd00876 Ras Ras family. The R 99.8 4E-18 8.7E-23 160.8 15.2 153 87-260 1-160 (160)
208 PF02421 FeoB_N: Ferrous iron 99.8 1.6E-18 3.4E-23 163.5 12.2 146 87-256 2-156 (156)
209 cd01879 FeoB Ferrous iron tran 99.8 2.7E-18 5.8E-23 162.0 13.6 146 90-259 1-155 (158)
210 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.8 1.2E-18 2.5E-23 146.1 8.6 77 447-525 1-77 (78)
211 cd04103 Centaurin_gamma Centau 99.8 4.6E-18 1E-22 162.1 13.9 147 87-259 2-157 (158)
212 cd04159 Arl10_like Arl10-like 99.8 5.5E-18 1.2E-22 158.9 14.2 147 88-258 2-158 (159)
213 PTZ00132 GTP-binding nuclear p 99.8 9.9E-18 2.1E-22 167.8 16.7 158 84-261 8-168 (215)
214 cd04098 eEF2_C_snRNP eEF2_C_sn 99.8 1.4E-18 2.9E-23 146.2 8.5 78 447-525 1-79 (80)
215 cd04148 RGK RGK subfamily. Th 99.8 7.6E-18 1.6E-22 169.6 15.2 154 87-261 2-163 (221)
216 cd01878 HflX HflX subfamily. 99.8 7.5E-18 1.6E-22 167.0 14.9 154 83-260 39-204 (204)
217 TIGR03594 GTPase_EngA ribosome 99.8 9.4E-18 2E-22 185.3 17.3 154 87-263 1-162 (429)
218 KOG0088 GTPase Rab21, small G 99.8 6.9E-19 1.5E-23 160.3 6.7 156 85-260 13-174 (218)
219 PRK00093 GTP-binding protein D 99.8 1.6E-17 3.5E-22 183.8 17.9 154 86-262 2-163 (435)
220 cd04164 trmE TrmE (MnmE, ThdF, 99.8 1.1E-17 2.5E-22 157.0 14.3 146 87-260 3-156 (157)
221 COG1159 Era GTPase [General fu 99.8 8.8E-18 1.9E-22 170.3 14.2 157 86-262 7-173 (298)
222 PRK12299 obgE GTPase CgtA; Rev 99.8 9E-18 1.9E-22 178.4 15.0 169 75-262 148-329 (335)
223 cd01514 Elongation_Factor_C El 99.8 3.2E-18 6.9E-23 143.8 9.2 78 447-525 1-78 (79)
224 cd04155 Arl3 Arl3 subfamily. 99.8 1.2E-17 2.6E-22 160.5 14.4 149 85-258 14-172 (173)
225 cd00157 Rho Rho (Ras homology) 99.8 1.1E-17 2.5E-22 160.0 14.0 152 87-258 2-170 (171)
226 PRK00454 engB GTP-binding prot 99.7 2.3E-17 4.9E-22 162.0 16.1 168 75-262 14-195 (196)
227 TIGR03598 GTPase_YsxC ribosome 99.7 1.2E-17 2.7E-22 162.3 13.1 155 76-250 9-179 (179)
228 PF00025 Arf: ADP-ribosylation 99.7 2.7E-17 5.8E-22 159.5 15.4 153 83-260 12-175 (175)
229 PRK15467 ethanolamine utilizat 99.7 8E-18 1.7E-22 160.5 11.4 143 86-262 2-148 (158)
230 KOG0459 Polypeptide release fa 99.7 5.6E-18 1.2E-22 175.6 10.8 242 81-328 75-394 (501)
231 PRK09518 bifunctional cytidyla 99.7 5E-17 1.1E-21 189.7 19.7 160 80-262 270-437 (712)
232 PRK14845 translation initiatio 99.7 3.6E-17 7.8E-22 193.1 18.3 194 98-323 474-723 (1049)
233 TIGR02729 Obg_CgtA Obg family 99.7 2.9E-17 6.3E-22 174.3 15.7 165 75-260 147-328 (329)
234 TIGR02528 EutP ethanolamine ut 99.7 1.4E-17 3E-22 155.1 11.0 135 87-257 2-141 (142)
235 TIGR00231 small_GTP small GTP- 99.7 9.8E-17 2.1E-21 149.4 15.5 153 86-257 2-160 (161)
236 PRK05291 trmE tRNA modificatio 99.7 3E-17 6.6E-22 181.5 13.8 148 86-262 216-371 (449)
237 cd04129 Rho2 Rho2 subfamily. 99.7 7.7E-17 1.7E-21 157.8 15.1 155 86-260 2-172 (187)
238 KOG0097 GTPase Rab14, small G 99.7 5.6E-17 1.2E-21 145.1 12.3 161 80-260 6-172 (215)
239 cd01881 Obg_like The Obg-like 99.7 6.6E-17 1.4E-21 155.3 13.5 151 90-259 1-175 (176)
240 PRK00089 era GTPase Era; Revie 99.7 8.8E-17 1.9E-21 168.6 15.5 157 86-262 6-172 (292)
241 TIGR03156 GTP_HflX GTP-binding 99.7 9.6E-17 2.1E-21 171.9 15.0 150 84-259 188-350 (351)
242 PRK12297 obgE GTPase CgtA; Rev 99.7 1.7E-16 3.6E-21 172.9 16.6 160 79-261 152-327 (424)
243 cd04163 Era Era subfamily. Er 99.7 2.1E-16 4.5E-21 149.2 15.1 155 86-260 4-168 (168)
244 cd00882 Ras_like_GTPase Ras-li 99.7 1.1E-16 2.3E-21 147.3 12.2 151 90-257 1-156 (157)
245 TIGR00450 mnmE_trmE_thdF tRNA 99.7 1.9E-16 4.2E-21 174.3 15.6 149 85-260 203-359 (442)
246 KOG0083 GTPase Rab26/Rab37, sm 99.7 1E-17 2.3E-22 148.5 4.2 152 90-260 2-159 (192)
247 KOG0091 GTPase Rab39, small G 99.7 9.7E-17 2.1E-21 147.2 9.6 155 86-260 9-172 (213)
248 cd00880 Era_like Era (E. coli 99.7 4.6E-16 1E-20 144.9 14.4 153 90-259 1-162 (163)
249 PRK12296 obgE GTPase CgtA; Rev 99.7 3.1E-16 6.8E-21 172.9 14.9 166 75-261 149-340 (500)
250 PRK09554 feoB ferrous iron tra 99.7 4E-16 8.6E-21 181.7 16.5 152 86-261 4-168 (772)
251 COG0218 Predicted GTPase [Gene 99.7 8.3E-16 1.8E-20 148.3 15.8 166 76-261 15-197 (200)
252 PRK12298 obgE GTPase CgtA; Rev 99.7 3.8E-16 8.2E-21 169.2 15.1 165 79-262 153-334 (390)
253 cd04102 RabL3 RabL3 (Rab-like3 99.7 7.8E-16 1.7E-20 152.5 15.9 152 87-258 2-197 (202)
254 KOG0081 GTPase Rab27, small G 99.7 3.4E-17 7.3E-22 149.4 5.5 156 83-258 7-178 (219)
255 COG5258 GTPBP1 GTPase [General 99.7 3.8E-16 8.2E-21 161.0 13.4 220 85-324 117-385 (527)
256 COG2229 Predicted GTPase [Gene 99.7 1.5E-15 3.3E-20 143.3 16.1 165 86-259 11-176 (187)
257 KOG0395 Ras-related GTPase [Ge 99.7 4.7E-16 1E-20 153.2 12.3 156 86-262 4-166 (196)
258 PRK11058 GTPase HflX; Provisio 99.7 8.2E-16 1.8E-20 168.4 15.1 155 85-262 197-363 (426)
259 COG0486 ThdF Predicted GTPase 99.7 8E-16 1.7E-20 164.6 14.3 152 86-262 218-377 (454)
260 KOG0073 GTP-binding ADP-ribosy 99.6 2.8E-15 6.1E-20 138.2 14.0 154 86-261 17-178 (185)
261 KOG1144 Translation initiation 99.6 1.8E-15 3.9E-20 166.0 14.6 160 86-260 476-686 (1064)
262 TIGR00437 feoB ferrous iron tr 99.6 1.7E-15 3.6E-20 172.6 14.3 145 92-260 1-154 (591)
263 cd04105 SR_beta Signal recogni 99.6 3.8E-15 8.3E-20 147.9 13.5 155 86-258 1-202 (203)
264 PTZ00099 rab6; Provisional 99.6 3.4E-15 7.4E-20 144.9 11.9 129 133-264 11-145 (176)
265 PF14492 EFG_II: Elongation Fa 99.6 7.3E-16 1.6E-20 127.9 5.6 72 336-412 1-74 (75)
266 cd01876 YihA_EngB The YihA (En 99.6 1.3E-14 2.9E-19 137.2 14.8 153 88-260 2-170 (170)
267 PLN00023 GTP-binding protein; 99.6 1.2E-14 2.5E-19 151.7 15.1 138 79-233 15-189 (334)
268 COG1100 GTPase SAR1 and relate 99.6 2.2E-14 4.7E-19 143.5 14.9 158 86-261 6-185 (219)
269 KOG0075 GTP-binding ADP-ribosy 99.6 9.5E-15 2.1E-19 132.1 9.0 151 86-260 21-181 (186)
270 PF10662 PduV-EutP: Ethanolami 99.6 1.3E-14 2.8E-19 134.2 9.1 135 86-257 2-142 (143)
271 KOG4252 GTP-binding protein [S 99.5 2.4E-15 5.1E-20 140.0 3.2 160 81-260 16-180 (246)
272 KOG1489 Predicted GTP-binding 99.5 5.5E-14 1.2E-18 142.7 13.2 165 74-259 185-365 (366)
273 cd01896 DRG The developmentall 99.5 6E-14 1.3E-18 142.3 13.3 147 87-260 2-225 (233)
274 KOG1423 Ras-like GTPase ERA [C 99.5 2.6E-13 5.7E-18 137.0 15.1 163 82-262 69-272 (379)
275 KOG0070 GTP-binding ADP-ribosy 99.5 8.1E-14 1.7E-18 131.9 10.7 153 84-261 16-178 (181)
276 KOG0071 GTP-binding ADP-ribosy 99.5 4.8E-13 1.1E-17 120.2 13.8 152 86-262 18-179 (180)
277 PF08477 Miro: Miro-like prote 99.5 8.9E-14 1.9E-18 125.3 9.1 113 87-214 1-119 (119)
278 COG0370 FeoB Fe2+ transport sy 99.5 3.8E-13 8.2E-18 149.9 14.6 154 86-263 4-166 (653)
279 KOG0076 GTP-binding ADP-ribosy 99.5 1.5E-13 3.3E-18 128.0 9.2 163 86-263 18-189 (197)
280 cd04104 p47_IIGP_like p47 (47- 99.5 5.4E-13 1.2E-17 131.9 13.3 161 86-263 2-186 (197)
281 KOG0393 Ras-related small GTPa 99.5 1.2E-13 2.6E-18 133.9 8.4 158 85-262 4-180 (198)
282 KOG0466 Translation initiation 99.4 3.1E-13 6.7E-18 135.8 8.5 183 84-278 37-258 (466)
283 KOG0463 GTP-binding protein GP 99.4 1.1E-12 2.3E-17 135.1 11.2 220 86-325 134-405 (641)
284 PF01926 MMR_HSR1: 50S ribosom 99.4 1.9E-12 4E-17 116.6 11.6 107 87-212 1-116 (116)
285 cd01882 BMS1 Bms1. Bms1 is an 99.4 8.1E-12 1.8E-16 126.1 16.7 138 85-247 39-182 (225)
286 COG1084 Predicted GTPase [Gene 99.4 1E-11 2.3E-16 127.4 15.1 162 77-260 158-335 (346)
287 COG2262 HflX GTPases [General 99.4 7.4E-12 1.6E-16 132.2 13.8 156 83-262 190-357 (411)
288 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 8.3E-12 1.8E-16 123.2 13.5 158 86-262 1-185 (196)
289 KOG1191 Mitochondrial GTPase [ 99.3 2.8E-12 6E-17 137.2 10.4 156 86-260 269-449 (531)
290 cd01899 Ygr210 Ygr210 subfamil 99.3 1.4E-11 3.1E-16 130.1 15.4 56 203-262 214-270 (318)
291 PRK09866 hypothetical protein; 99.3 1.2E-11 2.6E-16 137.4 14.6 110 150-259 229-351 (741)
292 KOG0072 GTP-binding ADP-ribosy 99.3 3.4E-12 7.5E-17 115.2 5.8 151 86-261 19-179 (182)
293 PF09439 SRPRB: Signal recogni 99.3 1.2E-11 2.5E-16 119.5 9.6 125 86-231 4-141 (181)
294 KOG0096 GTPase Ran/TC4/GSP1 (n 99.3 5.5E-12 1.2E-16 119.2 6.7 156 85-260 10-168 (216)
295 cd01850 CDC_Septin CDC/Septin. 99.3 3.9E-11 8.5E-16 124.7 13.7 150 86-243 5-184 (276)
296 COG0536 Obg Predicted GTPase [ 99.3 3E-11 6.4E-16 124.6 12.1 172 71-262 145-334 (369)
297 COG1163 DRG Predicted GTPase [ 99.3 3.3E-11 7.2E-16 123.2 11.9 151 83-260 61-288 (365)
298 KOG3883 Ras family small GTPas 99.2 1.7E-10 3.7E-15 105.4 14.1 170 85-272 9-186 (198)
299 KOG0074 GTP-binding ADP-ribosy 99.2 7.7E-11 1.7E-15 106.3 10.1 154 83-260 15-178 (185)
300 PRK09602 translation-associate 99.2 1.9E-10 4E-15 125.2 15.3 55 203-262 217-272 (396)
301 KOG1143 Predicted translation 99.2 2.4E-11 5.1E-16 125.3 7.5 175 86-263 168-389 (591)
302 COG3596 Predicted GTPase [Gene 99.2 1.1E-10 2.4E-15 117.3 12.0 162 82-262 36-223 (296)
303 PRK13768 GTPase; Provisional 99.2 1.2E-10 2.6E-15 119.7 11.1 112 151-263 97-249 (253)
304 PRK09435 membrane ATPase/prote 99.1 1.2E-10 2.5E-15 123.4 9.7 106 149-261 147-260 (332)
305 PF04670 Gtr1_RagA: Gtr1/RagA 99.1 8.5E-10 1.8E-14 111.2 14.9 158 87-262 1-177 (232)
306 KOG0090 Signal recognition par 99.1 3.6E-10 7.9E-15 109.2 9.7 151 86-259 39-237 (238)
307 KOG0077 Vesicle coat complex C 99.1 2.7E-10 5.8E-15 105.7 7.8 151 86-258 21-190 (193)
308 TIGR00073 hypB hydrogenase acc 99.1 5.9E-10 1.3E-14 111.1 11.0 170 80-259 17-205 (207)
309 KOG1532 GTPase XAB1, interacts 99.0 3.6E-10 7.9E-15 112.8 7.6 176 85-260 19-263 (366)
310 TIGR00101 ureG urease accessor 99.0 1.8E-09 3.8E-14 107.0 12.2 100 150-260 91-195 (199)
311 KOG1673 Ras GTPases [General f 99.0 5.4E-10 1.2E-14 102.4 7.7 158 86-260 21-185 (205)
312 PF03029 ATP_bind_1: Conserved 99.0 1.2E-10 2.6E-15 118.4 2.0 108 152-259 92-235 (238)
313 COG4917 EutP Ethanolamine util 99.0 1.1E-09 2.3E-14 97.2 7.3 138 86-259 2-144 (148)
314 TIGR02836 spore_IV_A stage IV 98.9 1.2E-08 2.6E-13 108.5 14.8 173 86-262 18-238 (492)
315 KOG4423 GTP-binding protein-li 98.9 7.3E-11 1.6E-15 111.2 -1.6 158 83-260 23-193 (229)
316 KOG1707 Predicted Ras related/ 98.9 4E-09 8.6E-14 115.2 11.3 160 86-265 10-179 (625)
317 TIGR00750 lao LAO/AO transport 98.9 4.5E-09 9.7E-14 110.8 11.1 105 149-260 125-237 (300)
318 PF03308 ArgK: ArgK protein; 98.9 1.1E-09 2.5E-14 110.1 5.8 167 84-259 28-228 (266)
319 PTZ00258 GTP-binding protein; 98.9 1.7E-08 3.7E-13 109.0 14.4 86 85-185 21-126 (390)
320 cd01853 Toc34_like Toc34-like 98.9 1.8E-08 3.8E-13 103.2 13.5 115 84-216 30-162 (249)
321 KOG1490 GTP-binding protein CR 98.9 6.6E-09 1.4E-13 111.5 9.1 165 77-260 158-340 (620)
322 smart00053 DYNc Dynamin, GTPas 98.8 4.4E-08 9.5E-13 99.4 12.6 135 84-219 25-208 (240)
323 PRK09601 GTP-binding protein Y 98.8 6.7E-08 1.4E-12 103.2 13.7 85 86-185 3-107 (364)
324 PF05049 IIGP: Interferon-indu 98.8 3.8E-08 8.1E-13 105.2 11.4 159 86-264 36-221 (376)
325 PF00735 Septin: Septin; Inte 98.8 7.4E-08 1.6E-12 100.3 12.9 138 86-231 5-171 (281)
326 PF00350 Dynamin_N: Dynamin fa 98.7 3.2E-08 7E-13 94.6 9.2 64 150-213 100-168 (168)
327 COG5019 CDC3 Septin family pro 98.7 1.7E-07 3.6E-12 98.3 14.5 139 86-232 24-192 (373)
328 COG1703 ArgK Putative periplas 98.7 7.5E-08 1.6E-12 98.3 11.6 104 149-261 142-254 (323)
329 PF04548 AIG1: AIG1 family; I 98.7 1.6E-07 3.5E-12 94.0 13.3 157 86-260 1-185 (212)
330 TIGR00991 3a0901s02IAP34 GTP-b 98.7 2.4E-07 5.3E-12 96.6 14.4 115 84-216 37-166 (313)
331 cd01900 YchF YchF subfamily. 98.7 9E-08 2E-12 99.0 11.1 83 88-185 1-103 (274)
332 PRK10463 hydrogenase nickel in 98.7 5.2E-08 1.1E-12 100.9 9.2 171 79-259 98-287 (290)
333 COG0378 HypB Ni2+-binding GTPa 98.7 3.6E-08 7.8E-13 95.0 7.3 163 85-259 13-199 (202)
334 KOG2486 Predicted GTPase [Gene 98.7 6.4E-08 1.4E-12 97.4 8.9 161 79-258 130-313 (320)
335 cd01859 MJ1464 MJ1464. This f 98.7 5.5E-08 1.2E-12 92.2 7.7 95 165-262 3-97 (156)
336 KOG0052 Translation elongation 98.5 4E-08 8.6E-13 103.6 3.0 126 85-217 7-156 (391)
337 cd01855 YqeH YqeH. YqeH is an 98.5 2E-07 4.2E-12 91.5 7.7 101 159-261 19-125 (190)
338 TIGR03597 GTPase_YqeH ribosome 98.5 2.9E-07 6.4E-12 99.4 8.4 195 9-232 90-296 (360)
339 KOG1547 Septin CDC10 and relat 98.5 2.4E-06 5.3E-11 84.2 13.7 138 85-231 46-213 (336)
340 TIGR00157 ribosome small subun 98.5 2.8E-07 6.1E-12 94.3 7.2 93 162-258 24-120 (245)
341 KOG3886 GTP-binding protein [S 98.5 4.8E-07 1E-11 88.7 8.3 119 85-220 4-133 (295)
342 KOG2655 Septin family protein 98.4 1.5E-06 3.3E-11 91.9 12.0 138 86-232 22-188 (366)
343 cd00066 G-alpha G protein alph 98.4 3.2E-06 7E-11 89.8 14.1 122 134-259 148-309 (317)
344 KOG0410 Predicted GTP binding 98.4 1E-06 2.3E-11 90.4 9.0 147 85-261 178-341 (410)
345 cd01855 YqeH YqeH. YqeH is an 98.4 1.5E-06 3.1E-11 85.3 9.3 131 8-161 60-190 (190)
346 smart00275 G_alpha G protein a 98.3 4.8E-06 1E-10 89.3 13.3 79 134-216 171-264 (342)
347 COG0012 Predicted GTPase, prob 98.3 5.1E-06 1.1E-10 87.8 12.6 86 86-186 3-109 (372)
348 cd01858 NGP_1 NGP-1. Autoanti 98.3 2.1E-06 4.6E-11 81.5 8.7 119 9-161 39-157 (157)
349 TIGR00993 3a0901s04IAP86 chlor 98.3 9.5E-06 2E-10 91.5 14.1 117 82-216 115-249 (763)
350 KOG1486 GTP-binding protein DR 98.3 5.8E-06 1.3E-10 82.1 10.5 84 86-188 63-153 (364)
351 cd01856 YlqF YlqF. Proteins o 98.2 2.1E-06 4.5E-11 82.9 6.8 99 158-261 2-101 (171)
352 cd01858 NGP_1 NGP-1. Autoanti 98.2 4.7E-06 1E-10 79.2 8.7 90 168-260 2-94 (157)
353 cd01849 YlqF_related_GTPase Yl 98.2 5.2E-06 1.1E-10 78.7 8.8 124 5-161 25-155 (155)
354 PRK13796 GTPase YqeH; Provisio 98.2 4.6E-06 9.9E-11 90.4 9.4 127 9-163 96-222 (365)
355 cd01849 YlqF_related_GTPase Yl 98.2 4.9E-06 1.1E-10 78.9 7.6 82 176-260 1-84 (155)
356 KOG3905 Dynein light intermedi 98.1 1.6E-05 3.4E-10 81.8 10.9 158 86-261 53-290 (473)
357 TIGR03596 GTPase_YlqF ribosome 98.1 5.2E-06 1.1E-10 86.5 6.8 100 158-262 4-104 (276)
358 COG5192 BMS1 GTP-binding prote 98.1 1.3E-05 2.8E-10 87.2 9.7 108 86-218 70-178 (1077)
359 PF03193 DUF258: Protein of un 98.1 5.8E-06 1.3E-10 78.6 5.6 44 54-108 15-58 (161)
360 PRK10416 signal recognition pa 98.0 2E-05 4.3E-10 83.6 10.3 157 84-252 113-301 (318)
361 PF05783 DLIC: Dynein light in 98.0 4.5E-05 9.8E-10 84.7 13.0 156 86-261 26-264 (472)
362 cd01857 HSR1_MMR1 HSR1/MMR1. 98.0 1.4E-05 3.1E-10 74.5 7.3 79 167-248 4-84 (141)
363 cd01854 YjeQ_engC YjeQ/EngC. 98.0 9.6E-06 2.1E-10 85.0 6.8 84 171-257 75-160 (287)
364 PRK12289 GTPase RsgA; Reviewed 98.0 1.2E-05 2.6E-10 86.3 7.4 85 170-258 85-172 (352)
365 TIGR00064 ftsY signal recognit 98.0 2.1E-05 4.7E-10 81.6 8.7 95 149-252 153-259 (272)
366 cd04178 Nucleostemin_like Nucl 98.0 1.2E-05 2.7E-10 77.7 6.4 56 85-161 117-172 (172)
367 PRK09563 rbgA GTPase YlqF; Rev 98.0 1.3E-05 2.8E-10 84.1 6.7 100 158-262 7-107 (287)
368 PRK12288 GTPase RsgA; Reviewed 97.9 2.5E-05 5.4E-10 83.9 8.6 88 172-259 118-206 (347)
369 smart00010 small_GTPase Small 97.9 1.6E-05 3.5E-10 71.3 6.1 109 87-250 2-115 (124)
370 KOG0448 Mitofusin 1 GTPase, in 97.9 7.5E-05 1.6E-09 83.7 12.3 159 85-246 109-311 (749)
371 KOG1487 GTP-binding protein DR 97.9 1.2E-05 2.6E-10 80.3 5.2 149 85-260 59-280 (358)
372 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 1.8E-05 3.9E-10 73.8 5.9 55 87-162 85-139 (141)
373 cd01856 YlqF YlqF. Proteins o 97.9 5.7E-05 1.2E-09 72.9 8.9 88 53-161 77-170 (171)
374 TIGR03597 GTPase_YqeH ribosome 97.9 3.2E-05 7E-10 83.6 8.0 97 161-259 50-151 (360)
375 TIGR03596 GTPase_YlqF ribosome 97.9 4.4E-05 9.6E-10 79.6 8.7 89 53-162 79-174 (276)
376 PRK00098 GTPase RsgA; Reviewed 97.9 2.8E-05 6.1E-10 81.9 7.2 81 171-256 77-162 (298)
377 cd01859 MJ1464 MJ1464. This f 97.8 5.7E-05 1.2E-09 71.5 8.2 85 7-107 39-123 (156)
378 PRK09563 rbgA GTPase YlqF; Rev 97.8 4.6E-05 1E-09 79.9 8.0 89 54-163 83-178 (287)
379 COG1161 Predicted GTPases [Gen 97.8 3.9E-05 8.6E-10 81.6 7.5 57 86-163 133-189 (322)
380 PRK12288 GTPase RsgA; Reviewed 97.8 5.6E-05 1.2E-09 81.1 8.4 88 53-165 184-271 (347)
381 cd03112 CobW_like The function 97.8 0.00011 2.3E-09 70.1 8.7 64 150-215 86-158 (158)
382 PRK14974 cell division protein 97.7 0.0002 4.3E-09 76.4 11.1 95 150-253 222-322 (336)
383 KOG1954 Endocytosis/signaling 97.7 0.0002 4.4E-09 74.9 10.6 134 83-217 56-225 (532)
384 KOG1707 Predicted Ras related/ 97.7 0.00032 6.9E-09 77.6 12.7 162 81-264 421-586 (625)
385 cd03110 Fer4_NifH_child This p 97.7 0.00028 6E-09 68.4 11.1 82 149-233 91-172 (179)
386 cd03114 ArgK-like The function 97.7 0.00014 2.9E-09 68.7 8.3 59 149-214 90-148 (148)
387 PRK14722 flhF flagellar biosyn 97.7 8.7E-05 1.9E-09 80.0 7.7 133 85-217 137-295 (374)
388 TIGR00157 ribosome small subun 97.7 0.00011 2.3E-09 75.3 7.8 120 8-165 66-185 (245)
389 COG1162 Predicted GTPases [Gen 97.6 0.00011 2.4E-09 76.2 7.3 62 87-166 166-231 (301)
390 cd03699 lepA_II lepA_II: This 97.6 0.00011 2.5E-09 62.5 6.0 52 271-322 1-86 (86)
391 KOG0082 G-protein alpha subuni 97.6 0.00063 1.4E-08 72.3 12.7 124 133-260 181-343 (354)
392 TIGR01425 SRP54_euk signal rec 97.6 0.00034 7.4E-09 76.7 11.0 64 150-216 182-252 (429)
393 PRK12289 GTPase RsgA; Reviewed 97.6 0.00015 3.2E-09 78.0 8.0 120 8-165 119-238 (352)
394 cd03115 SRP The signal recogni 97.6 0.00066 1.4E-08 65.4 11.4 81 149-234 81-168 (173)
395 cd01854 YjeQ_engC YjeQ/EngC. 97.6 0.00023 4.9E-09 74.7 8.4 88 53-165 140-227 (287)
396 PRK01889 GTPase RsgA; Reviewed 97.5 0.00028 6.1E-09 76.2 8.5 83 172-257 110-193 (356)
397 cd02036 MinD Bacterial cell di 97.5 0.00063 1.4E-08 65.4 10.1 81 152-234 64-145 (179)
398 TIGR00092 GTP-binding protein 97.5 0.00037 8E-09 74.9 8.7 86 86-186 3-109 (368)
399 PRK13796 GTPase YqeH; Provisio 97.5 0.00035 7.5E-09 75.8 8.5 95 163-260 58-158 (365)
400 cd01851 GBP Guanylate-binding 97.4 0.00031 6.7E-09 71.0 7.4 90 84-186 6-103 (224)
401 PF00448 SRP54: SRP54-type pro 97.4 0.00021 4.6E-09 70.6 6.1 67 149-217 82-154 (196)
402 PRK00098 GTPase RsgA; Reviewed 97.4 0.00052 1.1E-08 72.4 8.2 45 53-108 143-187 (298)
403 PRK12727 flagellar biosynthesi 97.3 0.0013 2.7E-08 73.6 10.5 65 150-216 428-497 (559)
404 KOG3859 Septins (P-loop GTPase 97.2 0.00054 1.2E-08 69.3 6.2 118 85-216 42-189 (406)
405 KOG1491 Predicted GTP-binding 97.2 0.00064 1.4E-08 70.8 6.9 87 86-187 21-127 (391)
406 KOG0447 Dynamin-like GTP bindi 97.2 0.0029 6.3E-08 69.3 12.1 142 82-226 305-505 (980)
407 PRK10867 signal recognition pa 97.2 0.002 4.4E-08 71.0 11.2 93 149-251 182-281 (433)
408 TIGR00959 ffh signal recogniti 97.2 0.0018 3.9E-08 71.4 10.7 81 149-234 181-268 (428)
409 KOG1424 Predicted GTP-binding 97.1 0.0005 1.1E-08 75.1 4.5 74 85-179 314-387 (562)
410 COG0523 Putative GTPases (G3E 97.1 0.0064 1.4E-07 64.6 12.5 165 86-254 2-194 (323)
411 PRK11537 putative GTP-binding 97.1 0.004 8.6E-08 66.3 11.0 143 84-229 3-175 (318)
412 cd04092 mtEFG2_II_like mtEFG2_ 97.0 0.0013 2.7E-08 55.6 5.8 47 271-321 1-82 (83)
413 PRK11889 flhF flagellar biosyn 97.0 0.00056 1.2E-08 73.8 4.2 66 150-217 320-391 (436)
414 cd04088 EFG_mtEFG_II EFG_mtEFG 97.0 0.0014 3E-08 55.2 5.7 47 271-321 1-82 (83)
415 PF09547 Spore_IV_A: Stage IV 97.0 0.0094 2E-07 64.4 13.0 171 87-262 19-238 (492)
416 PRK00771 signal recognition pa 97.0 0.0026 5.6E-08 70.4 9.1 64 150-216 175-245 (437)
417 cd03690 Tet_II Tet_II: This su 96.9 0.0017 3.6E-08 55.2 5.7 50 268-321 1-84 (85)
418 PRK13695 putative NTPase; Prov 96.9 0.0055 1.2E-07 59.1 9.9 72 178-260 98-172 (174)
419 COG3640 CooC CO dehydrogenase 96.9 0.0051 1.1E-07 61.4 9.3 63 151-216 134-198 (255)
420 PRK14721 flhF flagellar biosyn 96.9 0.0023 5E-08 70.2 7.6 130 85-216 191-339 (420)
421 KOG3887 Predicted small GTPase 96.9 0.0038 8.2E-08 62.2 8.1 155 86-260 28-201 (347)
422 cd02038 FleN-like FleN is a me 96.8 0.0047 1E-07 57.4 8.4 63 151-215 45-109 (139)
423 KOG0705 GTPase-activating prot 96.8 0.0017 3.6E-08 71.3 5.8 151 86-260 31-188 (749)
424 PRK12726 flagellar biosynthesi 96.8 0.004 8.6E-08 67.1 8.4 25 84-108 205-229 (407)
425 COG1618 Predicted nucleotide k 96.8 0.04 8.6E-07 52.1 13.8 141 86-260 6-175 (179)
426 KOG2485 Conserved ATP/GTP bind 96.7 0.002 4.3E-08 66.7 5.0 64 86-162 144-207 (335)
427 KOG2484 GTPase [General functi 96.7 0.0023 4.9E-08 68.1 5.4 58 84-162 251-308 (435)
428 cd02042 ParA ParA and ParB of 96.7 0.0089 1.9E-07 52.2 8.3 72 88-187 2-74 (104)
429 cd03691 BipA_TypA_II BipA_TypA 96.7 0.0042 9E-08 52.7 5.9 47 271-321 1-85 (86)
430 PRK12723 flagellar biosynthesi 96.7 0.0072 1.6E-07 65.8 9.2 66 149-216 253-325 (388)
431 TIGR02475 CobW cobalamin biosy 96.6 0.0088 1.9E-07 64.3 9.7 24 85-108 4-27 (341)
432 PRK12724 flagellar biosynthesi 96.6 0.0045 9.9E-08 67.6 7.4 66 149-216 298-372 (432)
433 cd04091 mtEFG1_II_like mtEFG1_ 96.6 0.0047 1E-07 51.8 6.0 46 271-321 1-80 (81)
434 cd03111 CpaE_like This protein 96.6 0.01 2.2E-07 52.5 8.3 59 152-212 44-106 (106)
435 cd04178 Nucleostemin_like Nucl 96.6 0.0094 2E-07 57.7 8.6 42 176-217 1-44 (172)
436 TIGR03348 VI_IcmF type VI secr 96.5 0.0048 1E-07 76.7 7.9 115 86-216 112-256 (1169)
437 COG1419 FlhF Flagellar GTP-bin 96.5 0.0061 1.3E-07 65.7 7.6 130 84-216 202-351 (407)
438 PRK05703 flhF flagellar biosyn 96.5 0.007 1.5E-07 67.0 8.1 64 150-216 299-370 (424)
439 PF02492 cobW: CobW/HypB/UreG, 96.5 0.0025 5.5E-08 61.9 4.0 69 150-219 84-157 (178)
440 PRK06731 flhF flagellar biosyn 96.5 0.01 2.2E-07 61.5 8.6 66 150-217 154-225 (270)
441 PRK06995 flhF flagellar biosyn 96.4 0.0071 1.5E-07 67.5 7.2 129 86-216 257-404 (484)
442 KOG1534 Putative transcription 96.2 0.0087 1.9E-07 58.7 6.0 143 87-232 5-190 (273)
443 COG1162 Predicted GTPases [Gen 96.2 0.013 2.7E-07 61.1 7.6 85 172-259 77-165 (301)
444 PRK14723 flhF flagellar biosyn 96.2 0.0091 2E-07 69.8 6.9 66 149-216 262-336 (767)
445 PRK13849 putative crown gall t 96.1 0.026 5.7E-07 57.3 9.1 64 149-214 82-151 (231)
446 cd02037 MRP-like MRP (Multiple 96.1 0.0084 1.8E-07 57.5 5.1 65 149-215 66-133 (169)
447 PRK01889 GTPase RsgA; Reviewed 95.9 0.015 3.2E-07 62.9 6.8 46 53-108 173-218 (356)
448 cd01983 Fer4_NifH The Fer4_Nif 95.9 0.047 1E-06 46.0 8.5 74 88-192 2-76 (99)
449 PF03266 NTPase_1: NTPase; In 95.8 0.049 1.1E-06 52.5 8.9 23 87-109 1-23 (168)
450 TIGR03574 selen_PSTK L-seryl-t 95.7 0.064 1.4E-06 54.9 10.2 20 88-107 2-21 (249)
451 COG0541 Ffh Signal recognition 95.6 0.07 1.5E-06 58.0 9.9 65 149-216 181-252 (451)
452 cd02117 NifH_like This family 95.5 0.087 1.9E-06 52.5 9.9 82 149-234 115-204 (212)
453 cd03689 RF3_II RF3_II: this su 95.4 0.025 5.4E-07 48.0 4.9 34 285-322 47-84 (85)
454 KOG1533 Predicted GTPase [Gene 95.4 0.021 4.5E-07 57.0 4.9 67 150-216 96-176 (290)
455 PRK10751 molybdopterin-guanine 95.4 0.039 8.5E-07 53.3 6.8 23 85-107 6-28 (173)
456 PF00503 G-alpha: G-protein al 95.4 0.029 6.3E-07 61.5 6.5 81 132-215 220-315 (389)
457 KOG0780 Signal recognition par 95.3 0.017 3.6E-07 61.5 4.0 123 86-215 102-252 (483)
458 COG0563 Adk Adenylate kinase a 95.3 0.034 7.4E-07 54.1 5.9 23 87-109 2-24 (178)
459 COG0552 FtsY Signal recognitio 95.1 0.013 2.7E-07 61.7 2.6 159 84-252 138-326 (340)
460 COG3523 IcmF Type VI protein s 95.1 0.026 5.7E-07 68.7 5.6 113 87-216 127-269 (1188)
461 PF08433 KTI12: Chromatin asso 94.9 0.2 4.4E-06 52.0 10.9 93 166-260 62-173 (270)
462 PF05621 TniB: Bacterial TniB 94.9 0.14 3.1E-06 53.5 9.6 32 77-108 53-84 (302)
463 PF06858 NOG1: Nucleolar GTP-b 94.9 0.057 1.2E-06 42.0 4.9 40 175-214 14-58 (58)
464 PRK08118 topology modulation p 94.8 0.026 5.5E-07 54.3 3.5 25 86-110 2-26 (167)
465 PF13207 AAA_17: AAA domain; P 94.8 0.027 5.9E-07 50.4 3.5 23 87-109 1-23 (121)
466 PF07015 VirC1: VirC1 protein; 94.7 0.31 6.7E-06 49.2 11.0 100 149-254 82-187 (231)
467 PF13555 AAA_29: P-loop contai 94.7 0.033 7.2E-07 44.3 3.3 21 87-107 25-45 (62)
468 KOG2743 Cobalamin synthesis pr 94.4 0.47 1E-05 49.2 11.5 136 81-218 53-226 (391)
469 KOG2423 Nucleolar GTPase [Gene 94.3 0.033 7.1E-07 59.3 3.1 115 47-186 270-386 (572)
470 PRK07261 topology modulation p 94.3 0.039 8.5E-07 53.2 3.5 22 87-108 2-23 (171)
471 cd02040 NifH NifH gene encodes 94.1 0.25 5.4E-06 50.9 9.4 82 149-233 115-203 (270)
472 PF09186 DUF1949: Domain of un 94.0 0.2 4.4E-06 38.4 6.4 56 454-512 1-56 (56)
473 PF13671 AAA_33: AAA domain; P 93.9 0.054 1.2E-06 49.9 3.4 23 88-110 2-24 (143)
474 PRK13760 putative RNA-associat 93.8 0.13 2.8E-06 51.8 6.1 65 450-516 164-228 (231)
475 COG1116 TauB ABC-type nitrate/ 93.7 0.045 9.8E-07 55.4 2.8 21 87-107 31-51 (248)
476 cd02019 NK Nucleoside/nucleoti 93.7 0.065 1.4E-06 43.4 3.2 20 88-107 2-21 (69)
477 PRK08099 bifunctional DNA-bind 93.6 0.062 1.3E-06 59.0 3.9 31 82-112 216-246 (399)
478 PF03205 MobB: Molybdopterin g 93.5 0.067 1.5E-06 49.9 3.4 21 87-107 2-22 (140)
479 COG1161 Predicted GTPases [Gen 93.5 0.14 3E-06 54.7 6.2 95 155-254 14-110 (322)
480 CHL00072 chlL photochlorophyll 93.5 0.36 7.7E-06 50.8 9.2 63 150-214 115-183 (290)
481 TIGR00235 udk uridine kinase. 93.3 0.084 1.8E-06 52.4 4.0 25 84-108 5-29 (207)
482 KOG2484 GTPase [General functi 93.3 0.17 3.7E-06 54.3 6.3 68 163-230 135-205 (435)
483 PRK13230 nitrogenase reductase 93.2 0.28 6E-06 51.1 7.9 82 150-233 116-203 (279)
484 cd03693 EF1_alpha_II EF1_alpha 93.2 0.29 6.3E-06 42.0 6.6 56 268-324 2-89 (91)
485 PRK13232 nifH nitrogenase redu 93.2 0.51 1.1E-05 48.9 9.8 82 149-233 115-202 (273)
486 COG1136 SalX ABC-type antimicr 93.1 0.066 1.4E-06 53.9 2.9 21 87-107 33-53 (226)
487 PRK06217 hypothetical protein; 93.1 0.087 1.9E-06 51.3 3.6 25 86-110 2-26 (183)
488 COG1763 MobB Molybdopterin-gua 93.1 0.24 5.2E-06 47.3 6.5 22 86-107 3-24 (161)
489 COG1126 GlnQ ABC-type polar am 93.0 0.072 1.6E-06 52.9 2.8 35 226-260 146-183 (240)
490 KOG3347 Predicted nucleotide k 93.0 0.08 1.7E-06 49.4 2.9 26 85-110 7-32 (176)
491 PF13521 AAA_28: AAA domain; P 92.8 0.069 1.5E-06 50.8 2.5 22 87-108 1-22 (163)
492 cd03109 DTBS Dethiobiotin synt 92.8 1.8 3.9E-05 39.8 11.8 119 89-234 4-128 (134)
493 PF13238 AAA_18: AAA domain; P 92.7 0.1 2.2E-06 46.8 3.2 21 88-108 1-21 (129)
494 TIGR01360 aden_kin_iso1 adenyl 92.6 0.11 2.4E-06 50.3 3.6 26 85-110 3-28 (188)
495 cd03238 ABC_UvrA The excision 92.5 0.11 2.4E-06 50.4 3.4 22 86-107 22-43 (176)
496 smart00382 AAA ATPases associa 92.5 0.11 2.4E-06 46.4 3.2 23 86-108 3-25 (148)
497 PF00005 ABC_tran: ABC transpo 92.4 0.093 2E-06 48.0 2.7 21 87-107 13-33 (137)
498 PRK13949 shikimate kinase; Pro 92.4 0.12 2.6E-06 49.7 3.6 25 86-110 2-26 (169)
499 cd02023 UMPK Uridine monophosp 92.4 0.1 2.3E-06 51.2 3.2 21 88-108 2-22 (198)
500 PRK05480 uridine/cytidine kina 92.3 0.13 2.9E-06 51.0 3.9 24 85-108 6-29 (209)
No 1
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.5e-188 Score=1453.20 Aligned_cols=566 Identities=64% Similarity=1.044 Sum_probs=557.6
Q ss_pred cCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEe-cCCCeEEEEEe
Q 043429 79 KVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVF-ENEPFCLNLID 157 (646)
Q Consensus 79 ~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~-~~~~~~l~liD 157 (646)
.++.++||||+||+|.+||||||++||++.|+.+..+.+.+|++|+++.||||||||+++.+++.|+. +++.|.+||||
T Consensus 3 ~~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlID 82 (603)
T COG0481 3 FTPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLID 82 (603)
T ss_pred ccchhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcC
Confidence 45678899999999999999999999999999999999999999999999999999999999999997 45889999999
Q ss_pred CCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCccc
Q 043429 158 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTN 237 (646)
Q Consensus 158 TPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~ 237 (646)
||||+||+++++|+|++|+|+||||||++|+++||+.+.+.++++++.+++|+||+||+.++++++.+++++.+|++...
T Consensus 83 TPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~d 162 (603)
T COG0481 83 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASD 162 (603)
T ss_pred CCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccchhHHHHHHHHhCCCCCCCCCCCceEEEEEEEeecc-----------------ceEEecCCCceEEc---
Q 043429 238 AILCSAKEGIGINEILNAIVKRIPPPSNTAGCPFRALIFDRIIMLM-----------------KLECYPPIKCKWKN--- 297 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~~d~~-----------------~~i~~~~~~~~~~v--- 297 (646)
.+.+|||+|.||++++++|++.+|+|.++++.||+|++||||||+| ++|++|++|+.|+|
T Consensus 163 av~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~V~ev 242 (603)
T COG0481 163 AVLVSAKTGIGIEDVLEAIVEKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYEVDEV 242 (603)
T ss_pred heeEecccCCCHHHHHHHHHhhCCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCCCEEEEEecCCEEEEEEE
Confidence 9999999999999999999999999999999999999999999999 89999999999998
Q ss_pred --------------cceeeEEEeecccccccccCCeeeecCccccCCCCCcccCCceEEeeeeeCCCCCHHHHHHHHHHH
Q 043429 298 --------------FKQVGYLSASIRSVADARVGDTITHFNRKADNLLPGYEEATPMVFCGLFPVDADQFPELRDALEKL 363 (646)
Q Consensus 298 --------------aG~Vg~i~~~i~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL 363 (646)
+|||||+++++|++.++++|||+++.++|+.+|||||++++||||||+||.+.+||+.|++||+||
T Consensus 243 GvftP~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~p~~e~LpGfk~~~P~Vf~GlyPid~~dye~LrdAleKL 322 (603)
T COG0481 243 GIFTPKMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASNPATEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKL 322 (603)
T ss_pred eeccCCccccccccCCceeEEEEeeeecccCcccceEeccCCCccccCCCCCcCCceEEEeecccChhHHHHHHHHHHhc
Confidence 999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred hhcCCceEEEeCCCccccceeEeccchhhHHHHHHHHHHHHcCceEEEecceeEEEEEeeCCeEEEEeCCCCCCCCcccc
Q 043429 364 QLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVNCVNGQTVECSNPSLLPEPGQRR 443 (646)
Q Consensus 364 ~~~Dpsl~~~~e~~~~lg~g~r~gflG~lHlei~~erL~~e~~~~v~~t~P~V~Y~e~~~~g~~~~~~~p~~~p~~~~i~ 443 (646)
.+||+||+||+|+|+|||+||||||||+|||||++|||+||||+++++|+|+|.|+...++|+.+.++||++||+.+.|+
T Consensus 323 ~LNDasl~~E~EtS~ALGfGfRcGFLGlLHmeiiqERLeREf~ldlI~TaPsV~Y~v~~~~g~~~~i~NPs~~P~~~~I~ 402 (603)
T COG0481 323 QLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITTAPSVVYKVELTDGEEIEVDNPSDLPDPNKIE 402 (603)
T ss_pred ccccceeeeccccchhccCceeehhhhHHHHHHHHHHHHHhhCcceEecCCceEEEEEEcCCcEEEecChHhCCChhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEccee
Q 043429 444 SIEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYK 523 (646)
Q Consensus 444 ~llEP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~ 523 (646)
.+.|||++++|++|+||+|+||++|+++||.+.+|+|++.+|+.|+|++||+|+|+||||+|||.|+|||||||+|.+|+
T Consensus 403 ~i~EP~v~~~ii~P~eylG~vm~Lcq~kRG~~~~m~yl~~~rv~l~Y~lPl~Eiv~DFfDkLKS~skGYAS~DYe~~~y~ 482 (603)
T COG0481 403 EIEEPYVKATIITPQEYLGNVMELCQEKRGIQIDMEYLDQNRVMLTYELPLAEIVFDFFDKLKSISKGYASFDYEFIGYR 482 (603)
T ss_pred eeeCceeEEEEeCcHHHHHHHHHHHHHhcCceecceEecCceEEEEEecchHHHHHHHhHhhhccccceeeecccccccc
Confidence 99999999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred eccceeeeeeccCCccCcceEEEehhhHHHHHHHHHHHHhccCCCCCceeeeEEeeCCeEEEeecccccchhhhhcccCC
Q 043429 524 ESQLIKLDILINGDCVEPLATIVHKDKAYAVGRALTQKLKELIPRQMFKVPIQACIGSKVIASEALSAIRKDVLAKCYGG 603 (646)
Q Consensus 524 ~~~~~k~~il~n~~~~~~l~~~~~~~~~~~~~~~~~~~lk~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~k~v~~~~~gg 603 (646)
+++|||+|||+||++|||||+||||++|+++||+||+||||+||||||+|||||+||+||||||||||+|||||||||||
T Consensus 483 ~~~lVK~dIlvNge~VDALs~ivHrd~A~~rgr~~~~KlKelIPrq~FeipIQAaIg~kiIARetIkalRKdVlAKCYGG 562 (603)
T COG0481 483 ESDLVKVDILVNGEKVDALSFIVHRDNAYERGRELVEKLKELIPRQQFEIPIQAAIGSKIIARETIKALRKDVLAKCYGG 562 (603)
T ss_pred ccceEEEEEEecCccccceeeeechhHHHHHHHHHHHHHHhhccHhheeeeeehhhCCeEEEhhhhHHhhcchhhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHhHHhHHHHhhchhhhhccCceecCHHHHHHHHhcccc
Q 043429 604 DISRKKKLLKKQAEGKKRMKAIGKVDVPQEAFMAVLKLEKE 644 (646)
Q Consensus 604 d~~rk~kll~~q~~gk~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (646)
||||||||||||||||||||++|||+||||||+++||.+++
T Consensus 563 DisRKrKLLeKQKeGKKRMK~iG~VeiPQeAFlavLk~~~~ 603 (603)
T COG0481 563 DISRKRKLLEKQKEGKKRMKQIGNVEIPQEAFLAVLKMDDD 603 (603)
T ss_pred cchHHHHHHHHhhhhhHHHHhcCCCcCCHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999998763
No 2
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-158 Score=1249.63 Aligned_cols=566 Identities=55% Similarity=0.882 Sum_probs=552.7
Q ss_pred cccccCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEE
Q 043429 75 DRLLKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLN 154 (646)
Q Consensus 75 ~~~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~ 154 (646)
..+..+|.+++|||+||+|+|||||||+++|++.||++.+...+.|++|.+++|||||||++++++++.|.. +..|.+|
T Consensus 50 ~~~~~~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~-~~~ylLN 128 (650)
T KOG0462|consen 50 PEFSLDPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKD-GQSYLLN 128 (650)
T ss_pred cccccCchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEc-CCceEEE
Confidence 346667789999999999999999999999999999999988999999999999999999999999999996 7779999
Q ss_pred EEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCC
Q 043429 155 LIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLD 234 (646)
Q Consensus 155 liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~ 234 (646)
|||||||.||++|++|++..|||+||||||++|+++||+.++++|++.++.+|+|+||+|++.++++++..++.+.|+++
T Consensus 129 LIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~ 208 (650)
T KOG0462|consen 129 LIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIP 208 (650)
T ss_pred eecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccchhHHHHHHHHhCCCCCCCCCCCceEEEEEEEeecc-----------------ceEEecCCCceEEc
Q 043429 235 CTNAILCSAKEGIGINEILNAIVKRIPPPSNTAGCPFRALIFDRIIMLM-----------------KLECYPPIKCKWKN 297 (646)
Q Consensus 235 ~~~i~~vSAk~g~GV~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~~d~~-----------------~~i~~~~~~~~~~v 297 (646)
.++++.+|||+|.|++++|++|++++|+|.+..++||||++||+|||.| |+|..+.+++.|+|
T Consensus 209 ~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev 288 (650)
T KOG0462|consen 209 PAEVIYVSAKTGLNVEELLEAIIRRVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEV 288 (650)
T ss_pred ccceEEEEeccCccHHHHHHHHHhhCCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEe
Confidence 9999999999999999999999999999999999999999999999999 89999999999988
Q ss_pred -----------------cceeeEEEeecccccccccCCeeeecCc-cccCCCCCcccCCceEEeeeeeCCCCCHHHHHHH
Q 043429 298 -----------------FKQVGYLSASIRSVADARVGDTITHFNR-KADNLLPGYEEATPMVFCGLFPVDADQFPELRDA 359 (646)
Q Consensus 298 -----------------aG~Vg~i~~~i~~~~~~~~GDtl~~~~~-~~~~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~a 359 (646)
||||||++|+|+++.++++||||++... .+.+++|+|++++||||+|.||.++.||+.|+++
T Consensus 289 ~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~~~~~v~tl~~~~~~~pMvFvg~fP~dgsd~~~l~~a 368 (650)
T KOG0462|consen 289 KVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTIAHKSVTKAVETLPGFEPTKPMVFVGLFPLDGSDYETLRDA 368 (650)
T ss_pred EEeEEeccCceeeeeecccccceeEecccccccccccceeeecccCcccCcCCCCCCCcceEEeccccCccchhhhHHHH
Confidence 9999999999999999999999998773 3345799999999999999999999999999999
Q ss_pred HHHHhhcCCceEEEeCCCccccceeEeccchhhHHHHHHHHHHHHcCceEEEecceeEEEEEeeCCeEEEEeCCCCCCCC
Q 043429 360 LEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVNCVNGQTVECSNPSLLPEP 439 (646)
Q Consensus 360 L~kL~~~Dpsl~~~~e~~~~lg~g~r~gflG~lHlei~~erL~~e~~~~v~~t~P~V~Y~e~~~~g~~~~~~~p~~~p~~ 439 (646)
++||++||+++.+.+|+|.|||+||||||+|+|||+||.|||+||||.++++|+|+|+||....+|+.+.|.||+.||+.
T Consensus 369 ~erL~lnd~sv~v~~~~s~aLg~gwr~gflG~LHm~Vf~erle~Eyg~elivt~PtV~Yr~~~~~~~~~~i~np~~fp~~ 448 (650)
T KOG0462|consen 369 IERLVLNDESVTVIKESSGALGQGWRLGFLGLLHMEVFIERLEREYGAELIVTPPTVPYRVVYSNGDEILISNPALFPDP 448 (650)
T ss_pred HHHHhcccccceeeecCCcccccceEeeccceeeHHHHHHHHHHhcCceeeecCCcceEEEEecCCceeeecChhhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEE
Q 043429 440 GQRRSIEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTF 519 (646)
Q Consensus 440 ~~i~~llEP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~ 519 (646)
+.++.++|||+.++|++|+||+|.||++|++|||++.+|.+++++|+.|+|.+|++|++.||+++|||.|+|||||+|++
T Consensus 449 ~~v~~~lEP~v~~tii~P~Ey~G~Vi~Lc~~rRgeq~dm~~i~~nr~~lky~lPl~elv~df~~~lks~tsGyAs~dye~ 528 (650)
T KOG0462|consen 449 SDVKEFLEPYVEATIITPDEYVGAVIELCSERRGEQKDMTYIDGNRVMLKYQLPLRELVGDFFDRLKSLTSGYASFDYED 528 (650)
T ss_pred ccchhhcCceEEEEEECcHHHHHHHHHHHHHhhhheecceeccCCeEEEEEecChHHHHHHHHHHHhccccceeEEeecc
Confidence 99999999999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred cceeeccceeeeeeccCCccCcceEEEehhhHHHHHHHHHHHHhccCCCCCceeeeEEeeCCeEEEeecccccchhhhhc
Q 043429 520 LGYKESQLIKLDILINGDCVEPLATIVHKDKAYAVGRALTQKLKELIPRQMFKVPIQACIGSKVIASEALSAIRKDVLAK 599 (646)
Q Consensus 520 ~~y~~~~~~k~~il~n~~~~~~l~~~~~~~~~~~~~~~~~~~lk~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~k~v~~~ 599 (646)
++|+++||||+||++||+.||+||.|+|+++|+++||+||+|||+.||||||+|.|||++|+|+||||||+|+||||+||
T Consensus 529 ~gY~~sdLvkldil~n~~~vd~l~tivh~~~a~~rGr~~v~klk~~ip~Q~~ev~iqa~igsk~iare~i~a~rKdv~ak 608 (650)
T KOG0462|consen 529 AGYQASDLVKLDILLNGKMVDGLSTIVHLSKAESRGREFVQKLKDLIPRQIFEVHIQACIGSKNIARETISAYRKDVLAK 608 (650)
T ss_pred cccccccceEEEeeccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhhhhhhhcccchhhHHHHHHhccceeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhHhHHhHHHHhhchhhhhccCceecCHHHHHHHHhc
Q 043429 600 CYGGDISRKKKLLKKQAEGKKRMKAIGKVDVPQEAFMAVLKL 641 (646)
Q Consensus 600 ~~ggd~~rk~kll~~q~~gk~~~~~~~~~~~~~~~~~~~~~~ 641 (646)
|||||+|||+|||+||||||||||++|||+||||+|+++||+
T Consensus 609 l~ggdv~r~~klL~~q~egkk~mk~vgnI~ipkeaf~~vlKr 650 (650)
T KOG0462|consen 609 LYGGDVTRLKKLLKKQAEGKKRMKTVGNIRIPKEAFINVLKR 650 (650)
T ss_pred ecCCchhhHHHHHHhhhcCceeeeccccEecCHHHHHHHhcC
Confidence 999999999999999999999999999999999999999984
No 3
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=4e-153 Score=1294.05 Aligned_cols=562 Identities=66% Similarity=1.057 Sum_probs=538.2
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEe-cCCCeEEEEEeCC
Q 043429 81 PASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVF-ENEPFCLNLIDTP 159 (646)
Q Consensus 81 ~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~-~~~~~~l~liDTP 159 (646)
+.+++|||+|+||.|||||||+++|++.+|.+.+++.+++++|+++.|+++|+|+..+.+.+.|.. +++.+.++|||||
T Consensus 3 ~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTP 82 (600)
T PRK05433 3 DMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTP 82 (600)
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECC
Confidence 456799999999999999999999999999998888889999999999999999999999998874 4567999999999
Q ss_pred CCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCccccc
Q 043429 160 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAI 239 (646)
Q Consensus 160 G~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~ 239 (646)
||.+|..++.++++.||++|+|||++++++.+|...|..+...++|+++|+||+|+.+++.+...+++.+.++++..+++
T Consensus 83 Gh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi 162 (600)
T PRK05433 83 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAV 162 (600)
T ss_pred CcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEE
Confidence 99999999999999999999999999999999999999998899999999999999887777777888888887766799
Q ss_pred ccccccccchhHHHHHHHHhCCCCCCCCCCCceEEEEEEEeecc-----------------ceEEecCCCceEEc-----
Q 043429 240 LCSAKEGIGINEILNAIVKRIPPPSNTAGCPFRALIFDRIIMLM-----------------KLECYPPIKCKWKN----- 297 (646)
Q Consensus 240 ~vSAk~g~GV~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~~d~~-----------------~~i~~~~~~~~~~v----- 297 (646)
++||++|.|+++|+++|.+.+|+|..+++.||+|+|||++||+| ++|+++++++.++|
T Consensus 163 ~iSAktG~GI~~Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~i~~ 242 (600)
T PRK05433 163 LVSAKTGIGIEEVLEAIVERIPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGV 242 (600)
T ss_pred EEecCCCCCHHHHHHHHHHhCccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCCceEEEEEeec
Confidence 99999999999999999999999999999999999999999998 78888888877665
Q ss_pred ------------cceeeEEEeecccccccccCCeeeecCccccCCCCCcccCCceEEeeeeeCCCCCHHHHHHHHHHHhh
Q 043429 298 ------------FKQVGYLSASIRSVADARVGDTITHFNRKADNLLPGYEEATPMVFCGLFPVDADQFPELRDALEKLQL 365 (646)
Q Consensus 298 ------------aG~Vg~i~~~i~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~ 365 (646)
|||||+++++++++.++++||||++..++...++|++++++||+|++++|.+.+|+++|++||+||++
T Consensus 243 ~~~~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~~~~~~~~~~l~~~~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~ 322 (600)
T PRK05433 243 FTPKMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNPAEEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQL 322 (600)
T ss_pred cCCCceECcEEcCCCEEEEecccccccccCCCCEEECCCCccccCCCCCCCCCcEEEEEEEECCccCHHHHHHHHHHHHH
Confidence 99999999999889999999999998877656899999999999999999999999999999999999
Q ss_pred cCCceEEEeCCCccccceeEeccchhhHHHHHHHHHHHHcCceEEEecceeEEEEEeeCCeEEEEeCCCCCCCCcccccc
Q 043429 366 NDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVNCVNGQTVECSNPSLLPEPGQRRSI 445 (646)
Q Consensus 366 ~Dpsl~~~~e~~~~lg~g~r~gflG~lHlei~~erL~~e~~~~v~~t~P~V~Y~e~~~~g~~~~~~~p~~~p~~~~i~~l 445 (646)
|||||+|++|++++||+||||||||+|||||++|||+||||+++++|+|+|+||||+++|+.+.++||++||+.++++.+
T Consensus 323 eD~sl~~~~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~~~~v~~~~P~V~Yreti~~g~~~~~~~p~~~pds~~~~~l 402 (600)
T PRK05433 323 NDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITTAPSVVYEVTLTDGEVIEVDNPSKLPDPGKIEEI 402 (600)
T ss_pred hCCeEEEEecCCcceecceEeecHHHHHHHHHHHHHHHhhCceEEEecCEEEEEEEEeCCcEEEEECcccCCCccccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeec
Q 043429 446 EEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKES 525 (646)
Q Consensus 446 lEP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~ 525 (646)
||||++++|++|+||+|+||++|++|||++.++++.+ ++++|+|++|++||++||+++|||+|+|||||+|+|+||+++
T Consensus 403 lEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~-~~~~i~~~~Pl~e~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~ 481 (600)
T PRK05433 403 EEPIVKATIIVPQEYVGAVMELCQEKRGVQKDMEYLG-NRVELTYELPLAEIVFDFFDRLKSVSRGYASLDYEFIGYRES 481 (600)
T ss_pred ECCEEEEEEEecHHHHHHHHHHHHHcCCEEeCcEecC-CeEEEEEEechHHhhhhHHHHhHhhcCCEEEEEEEECCcccc
Confidence 9999999999999999999999999999999999976 689999999999998999999999999999999999999999
Q ss_pred cceeeeeeccCCccCcceEEEehhhHHHHHHHHHHHHhccCCCCCceeeeEEeeCCeEEEeecccccchhhhhcccCCch
Q 043429 526 QLIKLDILINGDCVEPLATIVHKDKAYAVGRALTQKLKELIPRQMFKVPIQACIGSKVIASEALSAIRKDVLAKCYGGDI 605 (646)
Q Consensus 526 ~~~k~~il~n~~~~~~l~~~~~~~~~~~~~~~~~~~lk~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~k~v~~~~~ggd~ 605 (646)
||||+||+|||++|||||+||||++|+.+||+||+|||++||||||+|+|||+||+||||||||+|+|||||||||||||
T Consensus 482 ~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~qa~~~~~~~~~~~i~~~rk~v~~k~~~gd~ 561 (600)
T PRK05433 482 DLVKLDILINGEPVDALSFIVHRDKAYERGRALVEKLKELIPRQQFEIPIQAAIGSKIIARETIKALRKDVLAKCYGGDI 561 (600)
T ss_pred cEEEEEEEECCcccceeEEeeeHHHHHHHHHHHHHHHHhhCChhhccchhhhhhCCEEEEEecchhhhcchhhhhcCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHhHHHHhhchhhhhccCceecCHHHHHHHHhccc
Q 043429 606 SRKKKLLKKQAEGKKRMKAIGKVDVPQEAFMAVLKLEK 643 (646)
Q Consensus 606 ~rk~kll~~q~~gk~~~~~~~~~~~~~~~~~~~~~~~~ 643 (646)
|||||||+||||||||||+||+|+|||+||+++||.++
T Consensus 562 ~rk~kll~~q~~gk~~~~~~g~v~~~~~~f~~~~~~~~ 599 (600)
T PRK05433 562 SRKRKLLEKQKEGKKRMKQIGNVEIPQEAFLAVLKVDD 599 (600)
T ss_pred HHHHHHHHHhhhhhHHHHhcCCEecCHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999764
No 4
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=1.7e-152 Score=1287.70 Aligned_cols=558 Identities=65% Similarity=1.061 Sum_probs=533.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEe-cCCCeEEEEEeCCCCc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVF-ENEPFCLNLIDTPGHV 162 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~-~~~~~~l~liDTPG~~ 162 (646)
+||||+|+||+|||||||+++|++.++.+.++...++++|+++.|+++|+|+....+.+.|.. ++..+.++|||||||.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 589999999999999999999999999998877788999999999999999999999888864 3456899999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcccccccc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCS 242 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~~vS 242 (646)
+|..++.++++.||++|+|+|++++.+.++...|..+...++|+++|+||+|+.+++.++..+++.+.++....+++++|
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~vS 161 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILAS 161 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEee
Confidence 99999999999999999999999999999999999988899999999999999877777777788888887666789999
Q ss_pred cccccchhHHHHHHHHhCCCCCCCCCCCceEEEEEEEeecc-----------------ceEEecCCCceEEc--------
Q 043429 243 AKEGIGINEILNAIVKRIPPPSNTAGCPFRALIFDRIIMLM-----------------KLECYPPIKCKWKN-------- 297 (646)
Q Consensus 243 Ak~g~GV~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~~d~~-----------------~~i~~~~~~~~~~v-------- 297 (646)
|++|.|+++|+++|.+.+|+|..+++.||+|+|||+++|+| ++|+++++++.++|
T Consensus 162 AktG~GI~~Lle~I~~~lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i~~~~~ 241 (595)
T TIGR01393 162 AKTGIGIEEILEAIVKRVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTP 241 (595)
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCCCeeEEeEEEEecC
Confidence 99999999999999999999999999999999999999998 78888888776655
Q ss_pred ---------cceeeEEEeecccccccccCCeeeecCccccCCCCCcccCCceEEeeeeeCCCCCHHHHHHHHHHHhhcCC
Q 043429 298 ---------FKQVGYLSASIRSVADARVGDTITHFNRKADNLLPGYEEATPMVFCGLFPVDADQFPELRDALEKLQLNDA 368 (646)
Q Consensus 298 ---------aG~Vg~i~~~i~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dp 368 (646)
|||||++++|++++.++++||||++.+++..+++|++++++||+|++++|.+.+|+++|++||+||++|||
T Consensus 242 ~~~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~~~~~~~~~~l~~~~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~ 321 (595)
T TIGR01393 242 KLTKTDELSAGEVGYIIAGIKDVSDVRVGDTITHVKNPAKEPLPGFKEVKPMVFAGLYPIDTEDYEDLRDALEKLKLNDA 321 (595)
T ss_pred CceECCEEcCCCEEEEeccccccCccCCCCEEECCCCccccCCCCCcCCCcEEEEEEEECCcccHHHHHHHHHHHhccCC
Confidence 99999999999999999999999998877656899999999999999999999999999999999999999
Q ss_pred ceEEEeCCCccccceeEeccchhhHHHHHHHHHHHHcCceEEEecceeEEEEEeeCCeEEEEeCCCCCCCCccccccccc
Q 043429 369 ALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVNCVNGQTVECSNPSLLPEPGQRRSIEEP 448 (646)
Q Consensus 369 sl~~~~e~~~~lg~g~r~gflG~lHlei~~erL~~e~~~~v~~t~P~V~Y~e~~~~g~~~~~~~p~~~p~~~~i~~llEP 448 (646)
||+|++|++++||+||||||||+|||||++|||+||||+++++|+|+|+||||+++|+.++|+||++||..+.+..+|||
T Consensus 322 sl~~~~e~~~~l~~g~r~g~lG~lHlei~~erL~re~~~~v~~~~P~V~Yreti~~g~~~~~~~p~~~p~~~~~~~llEP 401 (595)
T TIGR01393 322 SLTYEPESSPALGFGFRCGFLGLLHMEIIQERLEREFNLDLITTAPSVIYRVYLTNGEVIEVDNPSDLPDPGKIEHVEEP 401 (595)
T ss_pred eEEEEecCCcccccccEEeeeeHHHHHHHHHHHHHHhCCeeEEecCEEEEEEEecCCcEEEEECcccCCCcccccceeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEEEEEEcccccHHHHHHHHhhcCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeeccce
Q 043429 449 FVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKESQLI 528 (646)
Q Consensus 449 ~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~~~~ 528 (646)
|++++|++|+||+|+||++|++|||++.+|++.+++++.|+|++|++||++||+++|||+|+|||||+|+|+||+++|||
T Consensus 402 ~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~~~~~i~~~~Plae~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~~~~ 481 (595)
T TIGR01393 402 YVKATIITPTEYLGPIMTLCQEKRGVQTNMEYLDPNRVELIYEMPLAEIVYDFFDKLKSISRGYASFDYELIGYRPSDLV 481 (595)
T ss_pred eEEEEEEccHHHHHHHHHHHHHcCCEEeCcEEcCCCeEEEEEEeccchhhhchhHHhhhhcCCEEEEEEEECCccccceE
Confidence 99999999999999999999999999999999876799999999999987999999999999999999999999999999
Q ss_pred eeeeeccCCccCcceEEEehhhHHHHHHHHHHHHhccCCCCCceeeeEEeeCCeEEEeecccccchhhhhcccCCchhHh
Q 043429 529 KLDILINGDCVEPLATIVHKDKAYAVGRALTQKLKELIPRQMFKVPIQACIGSKVIASEALSAIRKDVLAKCYGGDISRK 608 (646)
Q Consensus 529 k~~il~n~~~~~~l~~~~~~~~~~~~~~~~~~~lk~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~k~v~~~~~ggd~~rk 608 (646)
|+||+|||++|||||+||||++|+.+||+||+|||++||||||+|+|||+||+||||||||+|+||||||||||||||||
T Consensus 482 ~~~~~~n~~~~d~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~qa~~~~~~~a~~~~~~~~k~v~~k~~ggd~~rk 561 (595)
T TIGR01393 482 KLDILINGEPVDALSFIVHRDKAYSRGREICEKLKELIPRQQFEIPIQAAIGGKIIARETIKALRKDVTAKCYGGDITRK 561 (595)
T ss_pred EEEEEECCcccceeEEeeeHHHHHHHHHHHHHHHHhhCChhhccchhhhhhCCEEEEeeccchhccceeeeccCCCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHhhchhhhhccCceecCHHHHHHHHhc
Q 043429 609 KKLLKKQAEGKKRMKAIGKVDVPQEAFMAVLKL 641 (646)
Q Consensus 609 ~kll~~q~~gk~~~~~~~~~~~~~~~~~~~~~~ 641 (646)
|||||||||||||||++|+|+||||||+++||.
T Consensus 562 ~kll~~q~~gk~~~~~~g~v~~~~~~f~~~~~~ 594 (595)
T TIGR01393 562 RKLLEKQKEGKKRMKQIGKVEVPQEAFLAVLKV 594 (595)
T ss_pred HHHHHHhhhchHHHhccCCEecCHHHHHHHHcc
Confidence 999999999999999999999999999999985
No 5
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=3.3e-73 Score=640.73 Aligned_cols=417 Identities=31% Similarity=0.459 Sum_probs=366.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccc-cccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE-MKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~-~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
||||+|+||+|||||||+++|++.++.+.+.+ ...+++|+.+.|+++|+|+.+....+.|. ++.++|||||||.|
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~----~~kinlIDTPGh~D 76 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYN----GTKINIVDTPGHAD 76 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEEC----CEEEEEEECCCHHH
Confidence 68999999999999999999999988887654 35679999999999999999999999887 89999999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhC---CC----cc
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIG---LD----CT 236 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~---~~----~~ 236 (646)
|..++.++++.+|+++||||+++|...||...|..+...++|+++|+||+|+++++..++.+++.+.+. .. ..
T Consensus 77 F~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 77 FGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 999999999999999999999999999999999999999999999999999988887777777776652 21 23
Q ss_pred ccccccccccc----------chhHHHHHHHHhCCCCCCCCCCCceEEEEEEEeecc-----------------ceEEec
Q 043429 237 NAILCSAKEGI----------GINEILNAIVKRIPPPSNTAGCPFRALIFDRIIMLM-----------------KLECYP 289 (646)
Q Consensus 237 ~i~~vSAk~g~----------GV~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~~d~~-----------------~~i~~~ 289 (646)
|++++||++|. |++.||+.|++.+|+|..+.+.||+++||++++|+| +.|+++
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~ 236 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALM 236 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEe
Confidence 68999999996 799999999999999988889999999999999998 666666
Q ss_pred CCCc---eEEc------------------cceeeEEEeecccccccccCCeeeecCccccCCCCCcccCCceEEeeeeeC
Q 043429 290 PIKC---KWKN------------------FKQVGYLSASIRSVADARVGDTITHFNRKADNLLPGYEEATPMVFCGLFPV 348 (646)
Q Consensus 290 ~~~~---~~~v------------------aG~Vg~i~~~i~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~p~v~~~i~p~ 348 (646)
+.+. ...| |||++.+. +++++.+||||++.+++. ++|+++.++|+++..+.|.
T Consensus 237 ~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~----gl~~i~~Gdtl~~~~~~~--~l~~~~~~~P~~~~~~~~~ 310 (594)
T TIGR01394 237 KRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVA----GLEDINIGETIADPEVPE--ALPTITVDEPTLSMTFSVN 310 (594)
T ss_pred cCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEe----CCcccCCCCEEeCCCccc--cCCCCCCCCCeEEEEEEec
Confidence 6422 1122 99998664 457899999999877653 6899999999999999997
Q ss_pred CC---CCHH------HHHHHHHHHhhcCCceEEEeCCCccccceeEeccchhhHHHHHHHHHHHHcCceEEEecceeEEE
Q 043429 349 DA---DQFP------ELRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYR 419 (646)
Q Consensus 349 ~~---~d~~------~L~~aL~kL~~~Dpsl~~~~e~~~~lg~g~r~gflG~lHlei~~erL~~e~~~~v~~t~P~V~Y~ 419 (646)
+. .+.. +|+++|.||.++||||+++++.+. .+|.|+++|+|||+|++|||+|| |+++.+++|+|+||
T Consensus 311 ~~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~---~~~~v~g~GelHL~il~e~lrre-g~e~~~~~P~V~yr 386 (594)
T TIGR01394 311 DSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESA---DKFEVSGRGELHLSILIETMRRE-GFELQVGRPQVIYK 386 (594)
T ss_pred CCCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecCC---CeEEEEEECHHHHHHHHHHHhcc-CceEEEeCCEEEEE
Confidence 55 3333 399999999999999999865443 26899999999999999999999 99999999999999
Q ss_pred EEeeCCeEEEEeCCCCCCCCcccccccccEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeCCCEEEEEEEechhhhHh
Q 043429 420 VNCVNGQTVECSNPSLLPEPGQRRSIEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVG 499 (646)
Q Consensus 420 e~~~~g~~~~~~~p~~~p~~~~i~~llEP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~ 499 (646)
| + +| .+||||++++|.+|+||+|+||++|++|||++.+|+..+++++.|+|++|++|| .
T Consensus 387 e-i-~g------------------~llEPi~~~~i~vp~e~~G~v~~~l~~RrG~~~~~~~~~~~~~~i~~~vP~~~l-~ 445 (594)
T TIGR01394 387 E-I-DG------------------KKLEPIEELTIDVPEEHVGAVIEKLGKRKGEMVDMEPSGNGRTRLEFKIPSRGL-I 445 (594)
T ss_pred e-C-CC------------------eEECCEEEEEEEechHHHHHHHHHHHHhCCEEeccEECCCCEEEEEEEeChHHh-h
Confidence 9 4 34 479999999999999999999999999999999999877689999999999998 7
Q ss_pred hHHHHhcccCcceEEEEEEEcceeeccceeeeeeccCC
Q 043429 500 DFFDQLKSRTKGYASMEYTFLGYKESQLIKLDILINGD 537 (646)
Q Consensus 500 ~f~~~Lks~T~G~as~~~~~~~y~~~~~~k~~il~n~~ 537 (646)
||+++|+|+|+|+|+|+++|+||++.. -.+.=..||.
T Consensus 446 ~y~~~l~s~T~G~g~~~~~f~~Y~~~~-~~i~~~~~g~ 482 (594)
T TIGR01394 446 GFRTEFLTDTRGTGIMNHVFDEYEPWK-GEIETRRNGS 482 (594)
T ss_pred hHHHHHHhhcCCeEEEEEEeccceeCC-CcCCCCCcee
Confidence 999999999999999999999999966 3444455553
No 6
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=1.3e-71 Score=626.66 Aligned_cols=420 Identities=29% Similarity=0.431 Sum_probs=367.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccc-cccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE-MKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH 161 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~-~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~ 161 (646)
+++|||+|+||+|||||||+++|++.++.+.+.. ..++++|+.+.|+++|+|+......+.|. ++.+++||||||
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~----~~~inliDTPG~ 78 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWN----DYRINIVDTPGH 78 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecC----CEEEEEEECCCc
Confidence 4689999999999999999999999888876543 35689999999999999999998888886 899999999999
Q ss_pred ccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhC---CC----
Q 043429 162 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIG---LD---- 234 (646)
Q Consensus 162 ~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~---~~---- 234 (646)
.+|..++.++++.+|++|+|||+++|...++...|..+...++|.++|+||+|+++++++++.+++.+.+. ..
T Consensus 79 ~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~ 158 (607)
T PRK10218 79 ADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL 158 (607)
T ss_pred chhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999998888888888762 11
Q ss_pred ccccccccccccc----------chhHHHHHHHHhCCCCCCCCCCCceEEEEEEEeecc-----------------ceEE
Q 043429 235 CTNAILCSAKEGI----------GINEILNAIVKRIPPPSNTAGCPFRALIFDRIIMLM-----------------KLEC 287 (646)
Q Consensus 235 ~~~i~~vSAk~g~----------GV~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~~d~~-----------------~~i~ 287 (646)
..|++++||++|. |+..|++.|++.+|+|..+++.||+++||+++||+| +.|+
T Consensus 159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~ 238 (607)
T PRK10218 159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVT 238 (607)
T ss_pred CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEE
Confidence 2469999999998 689999999999999988889999999999999998 5666
Q ss_pred ecCC-Cc--eEEc------------------cceeeEEEeecccccccccCCeeeecCccccCCCCCcccCCceEEeeee
Q 043429 288 YPPI-KC--KWKN------------------FKQVGYLSASIRSVADARVGDTITHFNRKADNLLPGYEEATPMVFCGLF 346 (646)
Q Consensus 288 ~~~~-~~--~~~v------------------aG~Vg~i~~~i~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~p~v~~~i~ 346 (646)
+++. ++ ...| ||||+++. +++++.+||||++..++ .++|.++.++|++...+.
T Consensus 239 ~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~----gl~~~~~GdTl~~~~~~--~~l~~~~~~~P~~~~~~~ 312 (607)
T PRK10218 239 IIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAIT----GLGELNISDTVCDTQNV--EALPALSVDEPTVSMFFC 312 (607)
T ss_pred EecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEE----CccccccCcEEecCCCc--ccCCCCCCCCCeEEEEEE
Confidence 6654 32 1111 99998765 36789999999987655 368999999999999999
Q ss_pred eCC---CCCHHHHH------HHHHHHhhcCCceEEEeCCCccccceeEeccchhhHHHHHHHHHHHHcCceEEEecceeE
Q 043429 347 PVD---ADQFPELR------DALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVV 417 (646)
Q Consensus 347 p~~---~~d~~~L~------~aL~kL~~~Dpsl~~~~e~~~~lg~g~r~gflG~lHlei~~erL~~e~~~~v~~t~P~V~ 417 (646)
|.+ ..|..++. ++|.++.+|||||+|+++... .+|.|+++|+|||+|++|||+|| |+++.+++|+|+
T Consensus 313 ~~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~---~~~~v~g~GelHL~il~e~lrre-g~e~~~~~P~V~ 388 (607)
T PRK10218 313 VNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDA---DAFRVSGRGELHLSVLIENMRRE-GFELAVSRPKVI 388 (607)
T ss_pred eCCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCC---CeEEEEEEcHHHHHHHHHHHHhC-CceEEEeCCEEE
Confidence 998 66877763 456666669999999864332 46889999999999999999999 999999999999
Q ss_pred EEEEeeCCeEEEEeCCCCCCCCcccccccccEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeCCCEEEEEEEechhhh
Q 043429 418 YRVNCVNGQTVECSNPSLLPEPGQRRSIEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEM 497 (646)
Q Consensus 418 Y~e~~~~g~~~~~~~p~~~p~~~~i~~llEP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~ 497 (646)
|||+ +|. .+|||+.++|.+|+||+|+||++|++|||++++|+..+++++.|+|.+|++||
T Consensus 389 yret--~g~------------------klEPi~~v~i~vP~e~~G~V~~~l~~RrG~~~~m~~~~~~~~~l~~~vP~~~l 448 (607)
T PRK10218 389 FREI--DGR------------------KQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGL 448 (607)
T ss_pred EEEE--CCE------------------EeCCeEEEEEEechhhHHHHHHHHHhcCCEEeccEECCCCEEEEEEEcCHHHH
Confidence 9998 554 38999999999999999999999999999999999866689999999999999
Q ss_pred HhhHHHHhcccCcceEEEEEEEcceeeccceeeeeeccCC
Q 043429 498 VGDFFDQLKSRTKGYASMEYTFLGYKESQLIKLDILINGD 537 (646)
Q Consensus 498 ~~~f~~~Lks~T~G~as~~~~~~~y~~~~~~k~~il~n~~ 537 (646)
.+|+.+|+|+|+|+|+|+++|+||++..--.+.-..||.
T Consensus 449 -~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~g~~~~~~~g~ 487 (607)
T PRK10218 449 -IGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEVGQRQNGV 487 (607)
T ss_pred -hhHHHHhhhhCCCeEEEEEEecCccCCCCCCCCCccceE
Confidence 799999999999999999999999997644444445553
No 7
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-71 Score=630.05 Aligned_cols=430 Identities=33% Similarity=0.467 Sum_probs=377.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccc---cccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeC
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE---MKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDT 158 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~---~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDT 158 (646)
.+++|||+|+||.+||||||+++|+..+|.+++.+ .++.++|+++.|++|||||.+...++.|.. .+.+|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~---~~~iNlIDT 83 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG---DYRINLIDT 83 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC---ceEEEEeCC
Confidence 67899999999999999999999999999998754 356899999999999999999999999982 399999999
Q ss_pred CCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCc---
Q 043429 159 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDC--- 235 (646)
Q Consensus 159 PG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~--- 235 (646)
|||.||..++.++++.+|++++|+|+..|++.||...|+++.+.++|.++++||||...++...+.+++.+.++...
T Consensus 84 PGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v 163 (697)
T COG0480 84 PGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPV 163 (697)
T ss_pred CCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999998888877777776654310
Q ss_pred --------------------------------------------------------------------------------
Q 043429 236 -------------------------------------------------------------------------------- 235 (646)
Q Consensus 236 -------------------------------------------------------------------------------- 235 (646)
T Consensus 164 ~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i 243 (697)
T COG0480 164 QLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKAL 243 (697)
T ss_pred eccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHH
Confidence
Q ss_pred ---------ccccccccccccchhHHHHHHHHhCCCCCC--------------------CCCCCceEEEEEEEeecc---
Q 043429 236 ---------TNAILCSAKEGIGINEILNAIVKRIPPPSN--------------------TAGCPFRALIFDRIIMLM--- 283 (646)
Q Consensus 236 ---------~~i~~vSAk~g~GV~eLl~~I~~~ip~P~~--------------------~~~~pl~~~vf~~~~d~~--- 283 (646)
.|+++.||..+.|++.|++++++++|.|.. +.++|+.|++||+.+|||
T Consensus 244 ~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~ 323 (697)
T COG0480 244 RKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGK 323 (697)
T ss_pred HHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeEecCCCCe
Confidence 046788999999999999999999999831 347899999999999998
Q ss_pred ----------------------------ceEEecCCCceEEc----cceeeEEEeecccccccccCCeeeecCccccCCC
Q 043429 284 ----------------------------KLECYPPIKCKWKN----FKQVGYLSASIRSVADARVGDTITHFNRKADNLL 331 (646)
Q Consensus 284 ----------------------------~~i~~~~~~~~~~v----aG~Vg~i~~~i~~~~~~~~GDtl~~~~~~~~~~l 331 (646)
++|+.|++++..++ ||||+.++ +++++.+|||+++.+.+ ..+
T Consensus 324 l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~----Gl~~~~tGdTl~~~~~~--v~~ 397 (697)
T COG0480 324 LTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVALV----GLKDATTGDTLCDENKP--VIL 397 (697)
T ss_pred EEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccccCccEEEEE----cccccccCCeeecCCCc--ccc
Confidence 45556666666666 99998776 45678999999987732 247
Q ss_pred CCcccCCceEEeeeeeCCCCCHHHHHHHHHHHhhcCCceEEE--eCCCccccceeEeccchhhHHHHHHHHHHHHcCceE
Q 043429 332 PGYEEATPMVFCGLFPVDADQFPELRDALEKLQLNDAALKFE--PETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSL 409 (646)
Q Consensus 332 ~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~~~--~e~~~~lg~g~r~gflG~lHlei~~erL~~e~~~~v 409 (646)
..+..|.|++..++.|.++.|.+||.+||.+|+.+||+++++ .||++.+.+| ||+|||||+.+||+|+||+++
T Consensus 398 ~~~~~pePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsG-----mGELHLei~~drl~~~~~Vev 472 (697)
T COG0480 398 ESMEFPEPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETGETIISG-----MGELHLEIIVDRLKREFGVEV 472 (697)
T ss_pred ccccCCCceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCCcccEEEEe-----cchhhHHHHHHHHHhhcCceE
Confidence 888889999999999999999999999999999999999987 6899999999 999999999999999999999
Q ss_pred EEecceeEEEEEeeCC------------------e-EEEEeC------------------C-------------------
Q 043429 410 ITTAPSVVYRVNCVNG------------------Q-TVECSN------------------P------------------- 433 (646)
Q Consensus 410 ~~t~P~V~Y~e~~~~g------------------~-~~~~~~------------------p------------------- 433 (646)
.+++|+|+||||+++. . .+.+++ |
T Consensus 473 ~~~~PqV~YrETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~~~~~~f~~~i~~g~~P~~yi~~ve~G~~~a~~~Gp 552 (697)
T COG0480 473 EVGKPQVAYRETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLEDGSGFEFVDKIVGGVVPKEYIPAVEKGFREALKSGP 552 (697)
T ss_pred EecCCeeEEEEeecccccceeeeeeccCCCCcccEEEEEEEeCCCCcceEEEeecccCcCchhhhHHHHHHHHHHHhcCC
Confidence 9999999999999741 0 122211 1
Q ss_pred -CCCCCC----------------cc------------------cccccccEEEEEEEcccccHHHHHHHHhhcCceEeee
Q 043429 434 -SLLPEP----------------GQ------------------RRSIEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEM 478 (646)
Q Consensus 434 -~~~p~~----------------~~------------------i~~llEP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~ 478 (646)
.++|.. ++ ...||||||+++|.+|+||+|+||+++++|||+++++
T Consensus 553 Lag~pv~dvkv~L~dgs~h~vdss~~af~~a~~~a~~~a~~~a~P~lLEPi~~veI~~P~d~~G~V~~~l~~rRG~I~~~ 632 (697)
T COG0480 553 LAGYPVVDVKVTLLDGSYHEVDSSEMAFKIAASLAFKEAMLKAKPVLLEPIMKVEITTPEEYMGDVIGDLNSRRGQILGM 632 (697)
T ss_pred CCCCceEeeEEEEEcCccccCCCCHHHHHHHHHHHHHHHHhhCCceEecceEEEEEEcchhhhchhHHhhhhcceEEece
Confidence 123321 00 1289999999999999999999999999999999999
Q ss_pred eeeC-CCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeecc
Q 043429 479 KYFT-ESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKESQ 526 (646)
Q Consensus 479 ~~~~-~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~~ 526 (646)
+... +++..|++++|++|| +||..+|||.|+|+|+|+++|+||++.+
T Consensus 633 ~~~~~~~~~~i~A~vPl~Em-fgya~dLRs~T~Gra~~~m~f~~y~~vp 680 (697)
T COG0480 633 EQRPGGGLDVIKAEVPLAEM-FGYATDLRSATQGRASFSMEFDHYEEVP 680 (697)
T ss_pred eeccCCceEEEEEEechHHh-ccchhhhHhhcCCceeEEEEecccEeCC
Confidence 9873 567999999999999 9999999999999999999999999966
No 8
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-70 Score=587.00 Aligned_cols=434 Identities=30% Similarity=0.454 Sum_probs=379.1
Q ss_pred cCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccc---cccccccccccccccceeeeeeEEEEEEEecCCCeEEEE
Q 043429 79 KVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE---MKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNL 155 (646)
Q Consensus 79 ~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~---~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~l 155 (646)
..+.+++|||+|++|.++||||+.+++++.+|.+..-+ .+...+|+++.||+||||+........|. ++.+|+
T Consensus 33 ~~~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~----~~~iNi 108 (721)
T KOG0465|consen 33 RIPLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR----DYRINI 108 (721)
T ss_pred cCchhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeec----cceeEE
Confidence 34556889999999999999999999999988776543 34788999999999999999999999998 899999
Q ss_pred EeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCc
Q 043429 156 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDC 235 (646)
Q Consensus 156 iDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~ 235 (646)
||||||.||..++.|+++..||+++|+|+..|++.||...|.++.+.++|.+.++||+|..++++..+.+++...++.++
T Consensus 109 IDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~ 188 (721)
T KOG0465|consen 109 IDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKP 188 (721)
T ss_pred ecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887765321
Q ss_pred c-------------------------------------------------------------------------------
Q 043429 236 T------------------------------------------------------------------------------- 236 (646)
Q Consensus 236 ~------------------------------------------------------------------------------- 236 (646)
.
T Consensus 189 a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~ 268 (721)
T KOG0465|consen 189 AVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQ 268 (721)
T ss_pred heeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHH
Confidence 0
Q ss_pred ---------------cccccccccccchhHHHHHHHHhCCCCCC--------------------CCC-CCceEEEEEEEe
Q 043429 237 ---------------NAILCSAKEGIGINEILNAIVKRIPPPSN--------------------TAG-CPFRALIFDRII 280 (646)
Q Consensus 237 ---------------~i~~vSAk~g~GV~eLl~~I~~~ip~P~~--------------------~~~-~pl~~~vf~~~~ 280 (646)
|+++.||..+.||..|++++++++|.|.. ..+ .||.|+.||...
T Consensus 269 l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKle~ 348 (721)
T KOG0465|consen 269 LKAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKLEE 348 (721)
T ss_pred HHHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEeee
Confidence 68999999999999999999999999831 122 399999999999
Q ss_pred ecc----------------ceEEecCCCceEEc------------------cceeeEEEeecccccccccCCeeeecCc-
Q 043429 281 MLM----------------KLECYPPIKCKWKN------------------FKQVGYLSASIRSVADARVGDTITHFNR- 325 (646)
Q Consensus 281 d~~----------------~~i~~~~~~~~~~v------------------aG~Vg~i~~~i~~~~~~~~GDtl~~~~~- 325 (646)
++| +.|+-..+|++..+ |||||++. |+ ++..|||+++..+
T Consensus 349 g~fGqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~I~alf-Gi----dcasGDTftd~~~~ 423 (721)
T KOG0465|consen 349 GRFGQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGDICALF-GI----DCASGDTFTDKQNL 423 (721)
T ss_pred cCccceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhhccceeeee-cc----ccccCceeccCccc
Confidence 987 56666667777666 99999876 54 8999999998743
Q ss_pred cccCCCCCcccCCceEEeeeeeCCCCCHHHHHHHHHHHhhcCCceEEE--eCCCccccceeEeccchhhHHHHHHHHHHH
Q 043429 326 KADNLLPGYEEATPMVFCGLFPVDADQFPELRDALEKLQLNDAALKFE--PETSSAMGFGFRCGFLGLLHMEIVQERLER 403 (646)
Q Consensus 326 ~~~~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~~~--~e~~~~lg~g~r~gflG~lHlei~~erL~~ 403 (646)
+. .+..+..|.|++..+|.|.+.+|.+++.+||.++..|||+|++. .|+.+++.+| ||+|||||..|||+|
T Consensus 424 ~~--~m~si~vPePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~d~E~kqTvIsG-----MGELHLEIy~eRl~r 496 (721)
T KOG0465|consen 424 AL--SMESIHIPEPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLDPEMKQTVISG-----MGELHLEIYVERLVR 496 (721)
T ss_pred cc--eeeeeecCCCeeEEEecccccccHHHHHHHHHhhcccCCceEEEeccccccchhhc-----cchhhHHHHHHHHHH
Confidence 33 36778899999999999999999999999999999999999987 8999999999 999999999999999
Q ss_pred HcCceEEEecceeEEEEEeeCC--------------------------------eEEEEeC-------CC----------
Q 043429 404 EYNLSLITTAPSVVYRVNCVNG--------------------------------QTVECSN-------PS---------- 434 (646)
Q Consensus 404 e~~~~v~~t~P~V~Y~e~~~~g--------------------------------~~~~~~~-------p~---------- 434 (646)
|||++++++.|+|.||||+... +.++|.+ |.
T Consensus 497 Ey~~~~~~Gkp~VayRETi~~~~~f~~~hKkqSgG~gqy~kv~g~~epl~~~~~~~~eF~~~~~g~~~P~~f~pa~ekg~ 576 (721)
T KOG0465|consen 497 EYKVDAELGKPQVAYRETITSPVEFDYTHKKQSGGAGQYGKVEGVIEPLPPGSNEKFEFSDEIVGGNVPKQFIPAVEKGF 576 (721)
T ss_pred HhCCccccCCceeeehhhcCCcccceeeeccccCCCccccceeeEEeecCCCCCceEEEEecccCCCCchhHHHHHHHHH
Confidence 9999999999999999999641 1122322 11
Q ss_pred ----------CCCCC----------------ccc------------------ccccccEEEEEEEcccccHHHHHHHHhh
Q 043429 435 ----------LLPEP----------------GQR------------------RSIEEPFVKIELLTPKEYIGSLMELAQD 470 (646)
Q Consensus 435 ----------~~p~~----------------~~i------------------~~llEP~~~~~I~~P~e~~g~v~~~~~~ 470 (646)
+||.. +++ ..+|||||.++|++|+||.|.|+++|++
T Consensus 577 ~e~~~~G~L~ghpl~~~r~~l~Dga~h~vds~elaf~~at~~a~r~a~~~a~p~iLEPIM~Vevt~P~EfqG~Vi~~L~k 656 (721)
T KOG0465|consen 577 EEIVAKGPLIGHPLSNLRIVLQDGAHHPVDSSELAFMKATRNAFREAFKRAPPRILEPIMNVEVTTPEEFQGTVIGDLNK 656 (721)
T ss_pred HHHHhcCCccCCcccceEEEEecCCcCcccccHHHHHHHHHHHHHHHHHhCCcceeecceeeEEecchhhhhhhhhhhhh
Confidence 22211 111 2899999999999999999999999999
Q ss_pred cCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeeccceee
Q 043429 471 RRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKESQLIKL 530 (646)
Q Consensus 471 rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~~~~k~ 530 (646)
|+|++.+.+.. ++...|++++||++| ++|.++|||+|+|.|.|+|||++|+++...-.
T Consensus 657 R~a~I~~~d~~-~~~~ti~A~VPL~~m-fgYss~LRslTqGkgeftMEys~y~p~~~~vq 714 (721)
T KOG0465|consen 657 RKAQITGIDSS-EDYKTIKAEVPLNEM-FGYSSELRSLTQGKGEFTMEYSRYSPVPPDVQ 714 (721)
T ss_pred cccEEecccCC-CceEEEEecccHHHH-hhhhhhhhhhhcCcceEEEeecccCCCchHHH
Confidence 99999999764 588999999999999 99999999999999999999999999765433
No 9
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=2.3e-68 Score=616.26 Aligned_cols=432 Identities=30% Similarity=0.450 Sum_probs=365.7
Q ss_pred ccCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccc---cccccccccccccccceeeeeeEEEEEEEecCCCeEEE
Q 043429 78 LKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE---MKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLN 154 (646)
Q Consensus 78 ~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~---~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~ 154 (646)
..++.++||||+|+||+|||||||+++|++.++.+...+ .+++++|+.+.|++||+|++....++.|. ++.++
T Consensus 3 ~~~~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~----~~~~~ 78 (693)
T PRK00007 3 RETPLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK----DHRIN 78 (693)
T ss_pred CcCcccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC----CeEEE
Confidence 445678899999999999999999999999888765432 35789999999999999999999999887 89999
Q ss_pred EEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCC-
Q 043429 155 LIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL- 233 (646)
Q Consensus 155 liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~- 233 (646)
|+|||||.+|..++.++++.+|++++|+|+..|++.||...|..+.+.++|+++|+||+|+.+++.....+++++.++.
T Consensus 79 liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~ 158 (693)
T PRK00007 79 IIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGAN 158 (693)
T ss_pred EEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999877766666666554332
Q ss_pred --------------------------------------------------------------------------------
Q 043429 234 -------------------------------------------------------------------------------- 233 (646)
Q Consensus 234 -------------------------------------------------------------------------------- 233 (646)
T Consensus 159 ~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~ 238 (693)
T PRK00007 159 PVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTE 238 (693)
T ss_pred eeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCH
Confidence
Q ss_pred --------------CcccccccccccccchhHHHHHHHHhCCCCCC--------------------CCCCCceEEEEEEE
Q 043429 234 --------------DCTNAILCSAKEGIGINEILNAIVKRIPPPSN--------------------TAGCPFRALIFDRI 279 (646)
Q Consensus 234 --------------~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P~~--------------------~~~~pl~~~vf~~~ 279 (646)
...|+++.||+++.|++.|++.|++++|+|.. +++.|+.|+|||++
T Consensus 239 ~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~ 318 (693)
T PRK00007 239 EEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKIM 318 (693)
T ss_pred HHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEee
Confidence 01157788999999999999999999999852 24679999999999
Q ss_pred eecc-----------------ceEEecCCCc--------------eEEc----cceeeEEEeecccccccccCCeeeecC
Q 043429 280 IMLM-----------------KLECYPPIKC--------------KWKN----FKQVGYLSASIRSVADARVGDTITHFN 324 (646)
Q Consensus 280 ~d~~-----------------~~i~~~~~~~--------------~~~v----aG~Vg~i~~~i~~~~~~~~GDtl~~~~ 324 (646)
+|+| ++++....++ ..+| |||||.+. | ++++++||||++..
T Consensus 319 ~d~~~G~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~-g---l~~~~~GdtL~~~~ 394 (693)
T PRK00007 319 TDPFVGKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAAV-G---LKDTTTGDTLCDEK 394 (693)
T ss_pred ecCCCCcEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcEEEEe-C---CccCCcCCEeeCCC
Confidence 9997 3443333332 2222 99999875 4 45678999998765
Q ss_pred ccccCCCCCcccCCceEEeeeeeCCCCCHHHHHHHHHHHhhcCCceEEE--eCCCccccceeEeccchhhHHHHHHHHHH
Q 043429 325 RKADNLLPGYEEATPMVFCGLFPVDADQFPELRDALEKLQLNDAALKFE--PETSSAMGFGFRCGFLGLLHMEIVQERLE 402 (646)
Q Consensus 325 ~~~~~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~~~--~e~~~~lg~g~r~gflG~lHlei~~erL~ 402 (646)
.+. .++++..+.|+++++|+|.++.|.++|.+||++|.++||+|.|. .|+++.++.| +|+|||||+++||+
T Consensus 395 ~~~--~l~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~~l~g-----~GelHLei~~~rL~ 467 (693)
T PRK00007 395 NPI--ILESMEFPEPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVSTDEETGQTIIAG-----MGELHLDIIVDRMK 467 (693)
T ss_pred Ccc--ccCCCCCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEE-----ecHHhHHHHHHHHH
Confidence 432 36677788999999999999999999999999999999999997 4788988888 99999999999999
Q ss_pred HHcCceEEEecceeEEEEEeeCC---------------e----EEEEeC------------------C------------
Q 043429 403 REYNLSLITTAPSVVYRVNCVNG---------------Q----TVECSN------------------P------------ 433 (646)
Q Consensus 403 ~e~~~~v~~t~P~V~Y~e~~~~g---------------~----~~~~~~------------------p------------ 433 (646)
++||+++.+++|.|+||||+++. + .+.++. |
T Consensus 468 ~~~~vev~~s~p~V~yrETi~~~~~~~~~~~~~~gg~~~~~~v~l~~eP~~~~~~~~f~~~i~~g~~~~~~~~av~~G~~ 547 (693)
T PRK00007 468 REFKVEANVGKPQVAYRETIRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNEPGKGYEFVNKIVGGVIPKEYIPAVDKGIQ 547 (693)
T ss_pred HHhCCeeEecCCEEEEeecccCccccCcccccccCCCCceEEEEEEEEeCCCCCCcEEeecccCCcCcHHHHHHHHHHHH
Confidence 99999999999999999998542 1 122221 0
Q ss_pred --------CCCCCC----------------cc------------------cccccccEEEEEEEcccccHHHHHHHHhhc
Q 043429 434 --------SLLPEP----------------GQ------------------RRSIEEPFVKIELLTPKEYIGSLMELAQDR 471 (646)
Q Consensus 434 --------~~~p~~----------------~~------------------i~~llEP~~~~~I~~P~e~~g~v~~~~~~r 471 (646)
.++|.. +. -..||||||+++|.+|++|+|+||++|++|
T Consensus 548 ~a~~~GpL~g~pv~~v~v~l~d~~~~~~ds~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~R 627 (693)
T PRK00007 548 EAMESGVLAGYPVVDVKVTLFDGSYHDVDSSEMAFKIAGSMAFKEAAKKANPVLLEPIMKVEVVTPEEYMGDVIGDLNSR 627 (693)
T ss_pred HHHhcCCcCCCceeeEEEEEEecccCCCCCcHHHHHHHHHHHHHHHHHHCCCEEecCcEEEEEEechhhhhhHHHHHHhC
Confidence 123321 10 028999999999999999999999999999
Q ss_pred CceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeecc
Q 043429 472 RGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKESQ 526 (646)
Q Consensus 472 rG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~~ 526 (646)
||++.+++..+ ++..|++.+|++|+ ++|.++|||+|+|+|+|+++|+||++.+
T Consensus 628 Rg~i~~~~~~~-~~~~i~a~vP~~e~-~g~~~~Lrs~T~G~a~~~~~f~~y~~v~ 680 (693)
T PRK00007 628 RGQIEGMEDRG-GAKVIRAEVPLSEM-FGYATDLRSMTQGRATYSMEFDHYEEVP 680 (693)
T ss_pred CCeEecccccC-CcEEEEEEcCHHHh-hccHHHHHhhcCCceEEEEEeceeeECC
Confidence 99999998754 57899999999999 8999999999999999999999999843
No 10
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=6e-68 Score=613.10 Aligned_cols=430 Identities=30% Similarity=0.442 Sum_probs=366.7
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccc---cccccccccccccccceeeeeeEEEEEEEecCCCeEEEEE
Q 043429 80 VPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE---MKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLI 156 (646)
Q Consensus 80 ~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~---~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~li 156 (646)
++.+++|||+|+||+|||||||+++|++.++.+.+.+ .+.+++|+.+.|++||+|++....++.|. ++.+++|
T Consensus 3 ~~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~----~~~i~li 78 (691)
T PRK12739 3 FPLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK----GHRINII 78 (691)
T ss_pred CCccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC----CEEEEEE
Confidence 4567899999999999999999999999888765432 35689999999999999999999999986 8999999
Q ss_pred eCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCC--
Q 043429 157 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLD-- 234 (646)
Q Consensus 157 DTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~-- 234 (646)
|||||.+|..++.++++.+|++|+|+|+.+|.+.++...|..+...++|+|+++||+|+.+++.....+++.+.++..
T Consensus 79 DTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~~~ 158 (691)
T PRK12739 79 DTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAV 158 (691)
T ss_pred cCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCce
Confidence 999999999999999999999999999999999999999999999999999999999998877666666666554330
Q ss_pred --------------------------------------------------------------------------------
Q 043429 235 -------------------------------------------------------------------------------- 234 (646)
Q Consensus 235 -------------------------------------------------------------------------------- 234 (646)
T Consensus 159 ~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~ 238 (691)
T PRK12739 159 PIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEE 238 (691)
T ss_pred eEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHH
Confidence
Q ss_pred -------------cccccccccccccchhHHHHHHHHhCCCCCC-------------------CCCCCceEEEEEEEeec
Q 043429 235 -------------CTNAILCSAKEGIGINEILNAIVKRIPPPSN-------------------TAGCPFRALIFDRIIML 282 (646)
Q Consensus 235 -------------~~~i~~vSAk~g~GV~eLl~~I~~~ip~P~~-------------------~~~~pl~~~vf~~~~d~ 282 (646)
..|+++.||.++.|++.|++.|++++|+|.. +++.||.|+|||+++|+
T Consensus 239 l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~ 318 (691)
T PRK12739 239 IKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFKIMTDP 318 (691)
T ss_pred HHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEEeeeCC
Confidence 0157888999999999999999999999842 45779999999999999
Q ss_pred c-----------------ceEEecCCCc--------------eEEc----cceeeEEEeecccccccccCCeeeecCccc
Q 043429 283 M-----------------KLECYPPIKC--------------KWKN----FKQVGYLSASIRSVADARVGDTITHFNRKA 327 (646)
Q Consensus 283 ~-----------------~~i~~~~~~~--------------~~~v----aG~Vg~i~~~i~~~~~~~~GDtl~~~~~~~ 327 (646)
| ++|+....++ ..+| |||||++. | ++++++||||++.....
T Consensus 319 ~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~-g---l~~~~~gdtl~~~~~~~ 394 (691)
T PRK12739 319 FVGRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIAAAV-G---LKDTTTGDTLCDEKAPI 394 (691)
T ss_pred CCCeEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccccccCCCCEEEEe-C---CCcccCCCEEeCCCCcc
Confidence 7 3343333332 2233 99999876 4 45689999998765432
Q ss_pred cCCCCCcccCCceEEeeeeeCCCCCHHHHHHHHHHHhhcCCceEEE--eCCCccccceeEeccchhhHHHHHHHHHHHHc
Q 043429 328 DNLLPGYEEATPMVFCGLFPVDADQFPELRDALEKLQLNDAALKFE--PETSSAMGFGFRCGFLGLLHMEIVQERLEREY 405 (646)
Q Consensus 328 ~~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~~~--~e~~~~lg~g~r~gflG~lHlei~~erL~~e~ 405 (646)
.++++..++|+++++|+|.++.|.++|.+||++|.++||+|.+. .|+++.++.| +|+|||||+++||+++|
T Consensus 395 --~l~~~~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g-----~GelHLei~~~rL~~~f 467 (691)
T PRK12739 395 --ILESMEFPEPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRVETDEETGQTIISG-----MGELHLDIIVDRMKREF 467 (691)
T ss_pred --ccCCCCCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEE-----ecHHHHHHHHHHHHHHh
Confidence 46778889999999999999999999999999999999999997 5799988888 99999999999999999
Q ss_pred CceEEEecceeEEEEEeeCC---------------e----EEEEeC------------------C---------------
Q 043429 406 NLSLITTAPSVVYRVNCVNG---------------Q----TVECSN------------------P--------------- 433 (646)
Q Consensus 406 ~~~v~~t~P~V~Y~e~~~~g---------------~----~~~~~~------------------p--------------- 433 (646)
|+++.+++|.|+||||+++. . .+.++. |
T Consensus 468 ~vev~~s~p~V~yrEti~~~~~~~~~~~~~s~g~~~~~~v~l~~~P~~~~~~~~~~~~i~~g~~~~~~~~av~~G~~~a~ 547 (691)
T PRK12739 468 KVEANVGAPQVAYRETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNEEGKGFEFVNKIVGGVIPKEYIPAVEKGLEEAM 547 (691)
T ss_pred CCeeEecCCEEEEeeccCCcccccceeccccCCCCceeEEEEEEEECCCCCCcEEEEeccCCcCcHHHHHHHHHHHHHHH
Confidence 99999999999999998652 1 122221 1
Q ss_pred -----CCCCCC----------------cc------------------cccccccEEEEEEEcccccHHHHHHHHhhcCce
Q 043429 434 -----SLLPEP----------------GQ------------------RRSIEEPFVKIELLTPKEYIGSLMELAQDRRGE 474 (646)
Q Consensus 434 -----~~~p~~----------------~~------------------i~~llEP~~~~~I~~P~e~~g~v~~~~~~rrG~ 474 (646)
.++|.. ++ -..||||||+++|.+|++|+|+||++|++|||+
T Consensus 548 ~~GpL~g~pv~~v~v~l~d~~~h~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~ 627 (691)
T PRK12739 548 KNGVLAGYPMVDVKATLYDGSYHDVDSSELAFKIAASMALKEAAKKAGPVILEPIMKVEVVTPEEYMGDVIGDLNRRRGQ 627 (691)
T ss_pred hcCCcCCCceeeEEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEEchHhhhhHHHHHHhcCCe
Confidence 233421 10 138999999999999999999999999999999
Q ss_pred EeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeecc
Q 043429 475 FKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKESQ 526 (646)
Q Consensus 475 ~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~~ 526 (646)
+.+++..+ ++..|++.+|++|+ +||.++||++|+|+|+|.++|+||++.+
T Consensus 628 i~~~~~~~-~~~~i~a~vP~~e~-~g~~~~Lr~~T~G~a~~~~~f~~y~~v~ 677 (691)
T PRK12739 628 IQGMEARG-GAQIVKAFVPLSEM-FGYATDLRSATQGRATFSMEFDHYEEVP 677 (691)
T ss_pred EECccccC-CcEEEEEEeCHHHh-hccHHHHHhhccCceEEEEEeccceECC
Confidence 99998755 66899999999999 8999999999999999999999999843
No 11
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=1.8e-67 Score=610.56 Aligned_cols=431 Identities=32% Similarity=0.438 Sum_probs=368.4
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccc---cccccccccccccccceeeeeeEEEEEEEecCCCeEEEEE
Q 043429 80 VPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE---MKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLI 156 (646)
Q Consensus 80 ~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~---~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~li 156 (646)
++.+++|||+|+||.|||||||+++|+..++.+.+.+ .+++.+|+.+.|+++|+|+......+.|. ++.+++|
T Consensus 3 ~~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~----~~~i~li 78 (687)
T PRK13351 3 MPLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD----NHRINLI 78 (687)
T ss_pred CccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC----CEEEEEE
Confidence 4667899999999999999999999999888776543 24678899999999999999999998886 8999999
Q ss_pred eCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCC--
Q 043429 157 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLD-- 234 (646)
Q Consensus 157 DTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~-- 234 (646)
|||||.+|..++.++++.+|++++|+|++++.+.++...|..+...++|+++|+||+|+.+++.....+++++.++..
T Consensus 79 DtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~ 158 (687)
T PRK13351 79 DTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPL 158 (687)
T ss_pred ECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCeE
Confidence 999999999999999999999999999999999999999998888999999999999999988877777777665431
Q ss_pred --------------------------------------------------------------------------------
Q 043429 235 -------------------------------------------------------------------------------- 234 (646)
Q Consensus 235 -------------------------------------------------------------------------------- 234 (646)
T Consensus 159 ~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~ 238 (687)
T PRK13351 159 PLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQ 238 (687)
T ss_pred EEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHH
Confidence
Q ss_pred -------------cccccccccccccchhHHHHHHHHhCCCCCC------------------CCCCCceEEEEEEEeecc
Q 043429 235 -------------CTNAILCSAKEGIGINEILNAIVKRIPPPSN------------------TAGCPFRALIFDRIIMLM 283 (646)
Q Consensus 235 -------------~~~i~~vSAk~g~GV~eLl~~I~~~ip~P~~------------------~~~~pl~~~vf~~~~d~~ 283 (646)
..|+++.||++|.|++.|++.|+.++|+|.. +++.|+.|+|||+++|++
T Consensus 239 l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~ 318 (687)
T PRK13351 239 LRAPLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKVQYDPY 318 (687)
T ss_pred HHHHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEeeecCC
Confidence 1157888999999999999999999999952 456899999999999997
Q ss_pred -----------------ceEEecCCCceEE--------------c----cceeeEEEeecccccccccCCeeeecCcccc
Q 043429 284 -----------------KLECYPPIKCKWK--------------N----FKQVGYLSASIRSVADARVGDTITHFNRKAD 328 (646)
Q Consensus 284 -----------------~~i~~~~~~~~~~--------------v----aG~Vg~i~~~i~~~~~~~~GDtl~~~~~~~~ 328 (646)
++++.+..++.++ + ||||+.+. +++++.+||||++.....
T Consensus 319 ~G~i~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~----gl~~~~~gdtl~~~~~~~- 393 (687)
T PRK13351 319 AGKLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRAKAGDIVAVA----GLKELETGDTLHDSADPV- 393 (687)
T ss_pred CceEEEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCccCCCCEEEEE----CcccCccCCEEeCCCCcc-
Confidence 4554444443332 2 99998654 456788999998765432
Q ss_pred CCCCCcccCCceEEeeeeeCCCCCHHHHHHHHHHHhhcCCceEEE--eCCCccccceeEeccchhhHHHHHHHHHHHHcC
Q 043429 329 NLLPGYEEATPMVFCGLFPVDADQFPELRDALEKLQLNDAALKFE--PETSSAMGFGFRCGFLGLLHMEIVQERLEREYN 406 (646)
Q Consensus 329 ~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~~~--~e~~~~lg~g~r~gflG~lHlei~~erL~~e~~ 406 (646)
+++++..++|+++++|+|.+++|.++|.+||++|+++||+|.|+ .|+++.++.| +|+|||||+++||+++||
T Consensus 394 -~~~~~~~~~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~ii~g-----~GelHLei~~~rL~~~~~ 467 (687)
T PRK13351 394 -LLELLTFPEPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEEDEETGQTILSG-----MGELHLEVALERLRREFK 467 (687)
T ss_pred -ccCCCCCCCccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEE-----ecHHHHHHHHHHHHHHhC
Confidence 36677789999999999999999999999999999999999997 4789998888 999999999999999999
Q ss_pred ceEEEecceeEEEEEeeCC---------------e----EEEEe------------------------------------
Q 043429 407 LSLITTAPSVVYRVNCVNG---------------Q----TVECS------------------------------------ 431 (646)
Q Consensus 407 ~~v~~t~P~V~Y~e~~~~g---------------~----~~~~~------------------------------------ 431 (646)
+++.+++|.|+||||+++. + .+.++
T Consensus 468 vev~~~~p~V~y~Eti~~~~~~~~~~~~~~~~~~~~~~v~~~~ep~~~~~g~~~~~~~~~~~~~~~~~~ai~~g~~~a~~ 547 (687)
T PRK13351 468 LEVNTGKPQVAYRETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLERGAGFIFVSKVVGGAIPEELIPAVEKGIREALA 547 (687)
T ss_pred CceEecCCeEEEEeeccccccccceeeeccCCCceEEEEEEEEEECCCCCCcEEeecccCCcCCHHHHHHHHHHHHHHHh
Confidence 9999999999999998752 1 12222
Q ss_pred -CC-CCCCCC----------------cc------------------cccccccEEEEEEEcccccHHHHHHHHhhcCceE
Q 043429 432 -NP-SLLPEP----------------GQ------------------RRSIEEPFVKIELLTPKEYIGSLMELAQDRRGEF 475 (646)
Q Consensus 432 -~p-~~~p~~----------------~~------------------i~~llEP~~~~~I~~P~e~~g~v~~~~~~rrG~~ 475 (646)
.| .++|.. +. -..|+||||+++|.+|++|+|+||++|++|||++
T Consensus 548 ~GpL~~~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i 627 (687)
T PRK13351 548 SGPLAGYPVTDLRVTVLDGKYHPVDSSESAFKAAARKAFLEAFRKANPVLLEPIMELEITVPTEHVGDVLGDLSQRRGRI 627 (687)
T ss_pred cCCCCCCceeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEechHhhhhHHHHHHhCCcEE
Confidence 12 345521 00 0389999999999999999999999999999999
Q ss_pred eeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeecc
Q 043429 476 KEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKESQ 526 (646)
Q Consensus 476 ~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~~ 526 (646)
.+++..+++...|+|.+|++|+ +||.++|||+|+|+|+|+++|+||++..
T Consensus 628 ~~~~~~~~~~~~i~a~vP~~e~-~~~~~~Lrs~T~G~a~~~~~f~~y~~v~ 677 (687)
T PRK13351 628 EGTEPRGDGEVLVKAEAPLAEL-FGYATRLRSMTKGRGSFTMEFSHFDPVP 677 (687)
T ss_pred eceecCCCcEEEEEEEECHHHh-hChHHHHHhhcCCceEEEEEeccceeCC
Confidence 9998766555559999999999 8999999999999999999999999854
No 12
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=1.5e-67 Score=610.07 Aligned_cols=433 Identities=30% Similarity=0.426 Sum_probs=367.4
Q ss_pred cccCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccc---cccccccccccccccceeeeeeEEEEEEEecCCCeEE
Q 043429 77 LLKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE---MKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCL 153 (646)
Q Consensus 77 ~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~---~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l 153 (646)
|..++.++||||+|+||+|+|||||+++|++.++.+.+.+ .+++++|+.+.|+++|+|+......+.|. ++.+
T Consensus 2 ~~~~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~----~~~i 77 (689)
T TIGR00484 2 ARTTDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK----GHRI 77 (689)
T ss_pred CCcCccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC----CeEE
Confidence 3456778899999999999999999999999888775432 24689999999999999999999999987 8999
Q ss_pred EEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCC
Q 043429 154 NLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL 233 (646)
Q Consensus 154 ~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~ 233 (646)
++||||||.+|..++.++++.+|++++|+|+++|.+.++...|..+...++|+++|+||+|+.+++.....+++.+.++.
T Consensus 78 ~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~ 157 (689)
T TIGR00484 78 NIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGA 157 (689)
T ss_pred EEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999988899999999999999987776677777665442
Q ss_pred Cc------------------------------------------------------------------------------
Q 043429 234 DC------------------------------------------------------------------------------ 235 (646)
Q Consensus 234 ~~------------------------------------------------------------------------------ 235 (646)
..
T Consensus 158 ~~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~ 237 (689)
T TIGR00484 158 NAVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTI 237 (689)
T ss_pred CceeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCH
Confidence 11
Q ss_pred ----------------ccccccccccccchhHHHHHHHHhCCCCCC-------------------CCCCCceEEEEEEEe
Q 043429 236 ----------------TNAILCSAKEGIGINEILNAIVKRIPPPSN-------------------TAGCPFRALIFDRII 280 (646)
Q Consensus 236 ----------------~~i~~vSAk~g~GV~eLl~~I~~~ip~P~~-------------------~~~~pl~~~vf~~~~ 280 (646)
.|+++.||++|.|++.|++.|+.++|+|.. +++.||.|+|||+++
T Consensus 238 ~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~ 317 (689)
T TIGR00484 238 EEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKVAT 317 (689)
T ss_pred HHHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEeee
Confidence 156788999999999999999999999852 336789999999999
Q ss_pred ecc-----------------ceEEecCCCceE--------------Ec----cceeeEEEeecccccccccCCeeeecCc
Q 043429 281 MLM-----------------KLECYPPIKCKW--------------KN----FKQVGYLSASIRSVADARVGDTITHFNR 325 (646)
Q Consensus 281 d~~-----------------~~i~~~~~~~~~--------------~v----aG~Vg~i~~~i~~~~~~~~GDtl~~~~~ 325 (646)
|+| ++|+....++.. +| |||||++. | +.++++||||++...
T Consensus 318 d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~-g---l~~~~~gdtl~~~~~ 393 (689)
T TIGR00484 318 DPFVGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICAAI-G---LKDTTTGDTLCDPKI 393 (689)
T ss_pred cCCCCeEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEEEc-C---CCCCCCCCEEeCCCC
Confidence 997 444433333222 22 99999875 4 457789999987654
Q ss_pred cccCCCCCcccCCceEEeeeeeCCCCCHHHHHHHHHHHhhcCCceEEE--eCCCccccceeEeccchhhHHHHHHHHHHH
Q 043429 326 KADNLLPGYEEATPMVFCGLFPVDADQFPELRDALEKLQLNDAALKFE--PETSSAMGFGFRCGFLGLLHMEIVQERLER 403 (646)
Q Consensus 326 ~~~~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~~~--~e~~~~lg~g~r~gflG~lHlei~~erL~~ 403 (646)
.. .++++..++|+++++|+|.++.|.++|.+||++|.++||+|.|. .|+++.++.| +|+|||||+++||++
T Consensus 394 ~~--~~~~~~~~~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g-----~GelHLei~~~~L~~ 466 (689)
T TIGR00484 394 DV--ILERMEFPEPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTDPETGQTIIAG-----MGELHLDIIVDRMKR 466 (689)
T ss_pred cc--ccCCCCCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEECCCCCCEEEEE-----eeHHHHHHHHHHHHH
Confidence 33 36777889999999999999999999999999999999999986 5799988888 999999999999999
Q ss_pred HcCceEEEecceeEEEEEeeCCe-------------------EEEEeC-----------------C--------------
Q 043429 404 EYNLSLITTAPSVVYRVNCVNGQ-------------------TVECSN-----------------P-------------- 433 (646)
Q Consensus 404 e~~~~v~~t~P~V~Y~e~~~~g~-------------------~~~~~~-----------------p-------------- 433 (646)
+||+++.+++|.|+||||+++.. .+.+++ |
T Consensus 467 ~~~vev~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~eP~~~~g~~~~~~i~~g~~~~~~~~av~~g~~~a 546 (689)
T TIGR00484 467 EFKVEANVGAPQVAYRETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLEPKGYEFVNEIKGGVIPREYIPAVDKGLQEA 546 (689)
T ss_pred HhCCeeEecCCEEEEeecccCccccccccccccCCCCceEEEEEEEEECCCCCcEEEEeccCCcCCHHHHHHHHHHHHHH
Confidence 99999999999999999985421 122211 1
Q ss_pred ------CCCCCC----------------cc------------------cccccccEEEEEEEcccccHHHHHHHHhhcCc
Q 043429 434 ------SLLPEP----------------GQ------------------RRSIEEPFVKIELLTPKEYIGSLMELAQDRRG 473 (646)
Q Consensus 434 ------~~~p~~----------------~~------------------i~~llEP~~~~~I~~P~e~~g~v~~~~~~rrG 473 (646)
.++|.. +. -..|+||||+++|.+|++|+|+|+++|++|||
T Consensus 547 ~~~GpL~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg 626 (689)
T TIGR00484 547 MESGPLAGYPVVDIKATLFDGSYHDVDSSEMAFKLAASLAFKEAGKKANPVLLEPIMKVEVEVPEEYMGDVMGDLSSRRG 626 (689)
T ss_pred HhcCCcCCCceeeEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecCcEEEEEEecHHHhHhHHHHHHhcCC
Confidence 223321 10 02799999999999999999999999999999
Q ss_pred eEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeecc
Q 043429 474 EFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKESQ 526 (646)
Q Consensus 474 ~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~~ 526 (646)
++.+++..+ ++..|++.+|++|+ +||.++|||+|+|+|+|+++|+||++..
T Consensus 627 ~i~~~~~~~-~~~~I~a~vP~~e~-~g~~~~Lrs~T~G~~~~~~~f~~y~~v~ 677 (689)
T TIGR00484 627 IIEGMEARG-NVQKIKAEVPLSEM-FGYATDLRSFTQGRGTYSMEFLHYGEVP 677 (689)
T ss_pred eEecccccC-CcEEEEEEeCHHHH-hChHHHHHHhcCCceEEEEEeccceeCC
Confidence 999998754 68999999999999 8999999999999999999999999853
No 13
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=1.4e-65 Score=596.14 Aligned_cols=432 Identities=29% Similarity=0.461 Sum_probs=358.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCcccccc-ccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCC
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREM-KEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPG 160 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~-~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG 160 (646)
++++|||+|+||+|||||||+++|+..+|.+.+... .++++|+.+.|++||+|+.+...++.|..+++++.++|+||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 467999999999999999999999999998876543 3578999999999999999999999887666789999999999
Q ss_pred CccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHH-----------HHHHH
Q 043429 161 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVA-----------REIEE 229 (646)
Q Consensus 161 ~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~-----------~el~~ 229 (646)
|.+|..++.++++.+|++|+|+|+..|++.+|...|..+.+.++|.|+|+||+|+..++..... +++..
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~~ 176 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVNK 176 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998755421111 11111
Q ss_pred HhC------------C--Ccccccccccccccchh----------------------------------HHHHHHHHhCC
Q 043429 230 VIG------------L--DCTNAILCSAKEGIGIN----------------------------------EILNAIVKRIP 261 (646)
Q Consensus 230 ~l~------------~--~~~~i~~vSAk~g~GV~----------------------------------eLl~~I~~~ip 261 (646)
.+. . ....+++.||+.+.|+. .|++.|++++|
T Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~Lld~I~~~lP 256 (731)
T PRK07560 177 LIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLDMVVKHLP 256 (731)
T ss_pred HHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHHHHHHHHhCC
Confidence 110 0 11246678999988876 79999999999
Q ss_pred CCCC-------------------------CCCCCceEEEEEEEeecc-----------------ceEEecCCCceEEc--
Q 043429 262 PPSN-------------------------TAGCPFRALIFDRIIMLM-----------------KLECYPPIKCKWKN-- 297 (646)
Q Consensus 262 ~P~~-------------------------~~~~pl~~~vf~~~~d~~-----------------~~i~~~~~~~~~~v-- 297 (646)
+|.. +++.|+.|+|||+.+|++ +.|+....+....|
T Consensus 257 sP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~~~~v~~ 336 (731)
T PRK07560 257 NPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKKKNRVQQ 336 (731)
T ss_pred ChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCCceEehe
Confidence 9952 345699999999999997 55555554433332
Q ss_pred ----------------cceeeEEEeecccccccccCCeeeecCccccCCCCCc-ccCCceEEeeeeeCCCCCHHHHHHHH
Q 043429 298 ----------------FKQVGYLSASIRSVADARVGDTITHFNRKADNLLPGY-EEATPMVFCGLFPVDADQFPELRDAL 360 (646)
Q Consensus 298 ----------------aG~Vg~i~~~i~~~~~~~~GDtl~~~~~~~~~~l~~~-~~~~p~v~~~i~p~~~~d~~~L~~aL 360 (646)
|||||++. | ++++.+||||+..... .+++++ ..|+|+++++|+|.++.|.++|.+||
T Consensus 337 i~~~~g~~~~~v~~a~AGdIv~i~-g---l~~~~~GdtL~~~~~~--~~~~~~~~~p~Pv~~~aI~p~~~~d~~kL~~aL 410 (731)
T PRK07560 337 VGIYMGPEREEVEEIPAGNIAAVT-G---LKDARAGETVVSVEDM--TPFESLKHISEPVVTVAIEAKNPKDLPKLIEVL 410 (731)
T ss_pred ehhhhcCCCceeeeECCCCEEEEE-c---ccccccCCEEeCCCcc--ccccccccCCCCeEEEEEEECCHHHHHHHHHHH
Confidence 99999875 4 4678899999876433 246665 47899999999999999999999999
Q ss_pred HHHhhcCCceEEE--eCCCccccceeEeccchhhHHHHHHHHHHHHcCceEEEecceeEEEEEeeCCe------------
Q 043429 361 EKLQLNDAALKFE--PETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVNCVNGQ------------ 426 (646)
Q Consensus 361 ~kL~~~Dpsl~~~--~e~~~~lg~g~r~gflG~lHlei~~erL~~e~~~~v~~t~P~V~Y~e~~~~g~------------ 426 (646)
++|++|||+|+|+ +|+++.++.| +|+|||||+++||+++||+++.+++|.|+||||+.+..
T Consensus 411 ~~L~~eDPsl~v~~~~etge~~l~g-----~GElHLei~~~rL~~~~~vev~~~~p~V~yrETI~~~~~~~~~~~~~~~~ 485 (731)
T PRK07560 411 RQLAKEDPTLVVKINEETGEHLLSG-----MGELHLEVITYRIKRDYGIEVVTSEPIVVYRETVRGKSQVVEGKSPNKHN 485 (731)
T ss_pred HHHHhhCCcEEEEEcCCCCCeEEEc-----CCHHHHHHHHHHHHHHhCCceEecCCEEEEEEecccCccceEEECCCCce
Confidence 9999999999996 5789988888 99999999999999999999999999999999986531
Q ss_pred --EEEEeC-C----------------------------------------------------------------------
Q 043429 427 --TVECSN-P---------------------------------------------------------------------- 433 (646)
Q Consensus 427 --~~~~~~-p---------------------------------------------------------------------- 433 (646)
.+.+++ |
T Consensus 486 ~v~l~iePl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~i~~~~~~~~f~~~~~gg~~~~~~~~av~~G 565 (731)
T PRK07560 486 RFYISVEPLEEEVIEAIKEGEISEDMDKKEAKILREKLIEAGMDKDEAKRVWAIYNGNVFIDMTKGIQYLNEVMELIIEG 565 (731)
T ss_pred EEEEEEEECCHHHHHHHhcCCcccccchHHHHHHHHhhhhcCCchhhhhceeeccCCeEEEECCCCccCHHHHHHHHHHH
Confidence 112211 0
Q ss_pred ----------CCCCCC------------c------c------------------cccccccEEEEEEEcccccHHHHHHH
Q 043429 434 ----------SLLPEP------------G------Q------------------RRSIEEPFVKIELLTPKEYIGSLMEL 467 (646)
Q Consensus 434 ----------~~~p~~------------~------~------------------i~~llEP~~~~~I~~P~e~~g~v~~~ 467 (646)
.++|.. . . -.+||||||.++|.+|++|+|+||++
T Consensus 566 ~~~a~~~GpL~g~pv~~v~v~l~d~~~h~d~~~~~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~g~v~~~ 645 (731)
T PRK07560 566 FREAMKEGPLAAEPVRGVKVRLHDAKLHEDAIHRGPAQVIPAVRNAIFAAMLTAKPTLLEPIQKVDINVPQDYMGAVTRE 645 (731)
T ss_pred HHHHHhcCCccCCceeeEEEEEEEeeecccccccccchHHHHHHHHHHHHHHhCCCEEeecEEEEEEEecHHHhhHHHHH
Confidence 011210 0 0 02899999999999999999999999
Q ss_pred HhhcCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeecc
Q 043429 468 AQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKESQ 526 (646)
Q Consensus 468 ~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~~ 526 (646)
|++|||++.+++.. +++..|++.+|++|+ +||.++|||+|+|+|+|.++|+||++.+
T Consensus 646 L~~rrg~i~~~~~~-~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 702 (731)
T PRK07560 646 IQGRRGKILDMEQE-GDMAIIEAEAPVAEM-FGFAGEIRSATEGRALWSTEFAGFEPVP 702 (731)
T ss_pred HHhcCCeeeeeecC-CCcEEEEEEEehHHh-cCCchHHHhhCcCCceEEEEeccceeCC
Confidence 99999999999863 467999999999999 8999999999999999999999999965
No 14
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=1.2e-64 Score=586.10 Aligned_cols=419 Identities=31% Similarity=0.433 Sum_probs=360.0
Q ss_pred EcCCCCCHHHHHHHHHHhcCCccccc---cccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchhh
Q 043429 91 IAHIDHGKSTLADKLLQMTGTVQKRE---MKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYE 167 (646)
Q Consensus 91 iG~~~~GKSTLi~~Ll~~~~~i~~~~---~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~~ 167 (646)
+||+|||||||+++|+..+|.+.+.+ .+.+++|+++.|+++|+|+......+.|. ++.+++||||||.+|..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~----~~~i~liDtPG~~~~~~~ 76 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK----GHKINLIDTPGHVDFTGE 76 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC----CEEEEEEECCCcHHHHHH
Confidence 69999999999999999999876643 34589999999999999999999998887 899999999999999999
Q ss_pred HhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCC-------------
Q 043429 168 VSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLD------------- 234 (646)
Q Consensus 168 ~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~------------- 234 (646)
+.++++.+|++++|+|++++.+.++...|..+...++|+++|+||+|+..++..+..+++.+.++.+
T Consensus 77 ~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~ 156 (668)
T PRK12740 77 VERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDD 156 (668)
T ss_pred HHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCC
Confidence 9999999999999999999999999999998888999999999999998877766777776654421
Q ss_pred -------------------------------------------------------------------------------c
Q 043429 235 -------------------------------------------------------------------------------C 235 (646)
Q Consensus 235 -------------------------------------------------------------------------------~ 235 (646)
.
T Consensus 157 ~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~ 236 (668)
T PRK12740 157 FTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEI 236 (668)
T ss_pred ceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCE
Confidence 1
Q ss_pred ccccccccccccchhHHHHHHHHhCCCCCC-----------------CCCCCceEEEEEEEeecc---------------
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRIPPPSN-----------------TAGCPFRALIFDRIIMLM--------------- 283 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~ip~P~~-----------------~~~~pl~~~vf~~~~d~~--------------- 283 (646)
.|++++||++|.|++.|++.|+..+|+|.. +++.|+.|+|||+++|++
T Consensus 237 ~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG~L~ 316 (668)
T PRK12740 237 VPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRVYSGTLK 316 (668)
T ss_pred EEEEeccccCCccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEc
Confidence 147899999999999999999999999952 557899999999999997
Q ss_pred --ceEEecCCCceEEc------------------cceeeEEEeecccccccccCCeeeecCccccCCCCCcccCCceEEe
Q 043429 284 --KLECYPPIKCKWKN------------------FKQVGYLSASIRSVADARVGDTITHFNRKADNLLPGYEEATPMVFC 343 (646)
Q Consensus 284 --~~i~~~~~~~~~~v------------------aG~Vg~i~~~i~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~p~v~~ 343 (646)
++++..+.++.+.+ |||||++. | +.++++||||++..... +++++..++|++++
T Consensus 317 ~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~-g---l~~~~~Gdtl~~~~~~~--~~~~~~~~~P~~~~ 390 (668)
T PRK12740 317 KGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVA-K---LKDAATGDTLCDKGDPI--LLEPMEFPEPVISL 390 (668)
T ss_pred CCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEe-c---cCccCCCCEEeCCCCcc--ccCCCCCCCcceEE
Confidence 55555554433332 99999876 4 45789999998765433 47788888999999
Q ss_pred eeeeCCCCCHHHHHHHHHHHhhcCCceEEEe--CCCccccceeEeccchhhHHHHHHHHHHHHcCceEEEecceeEEEEE
Q 043429 344 GLFPVDADQFPELRDALEKLQLNDAALKFEP--ETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVN 421 (646)
Q Consensus 344 ~i~p~~~~d~~~L~~aL~kL~~~Dpsl~~~~--e~~~~lg~g~r~gflG~lHlei~~erL~~e~~~~v~~t~P~V~Y~e~ 421 (646)
+|+|.+++|+++|.+||++|+++||+|.+.. ++++.++.| +|+|||||+++||++|||+++.+++|+|+||||
T Consensus 391 ~i~p~~~~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g-----~GelhLei~~~~L~~~~~~~v~~~~p~V~yrEt 465 (668)
T PRK12740 391 AIEPKDKGDEEKLSEALGKLAEEDPTLRVERDEETGQTILSG-----MGELHLDVALERLKREYGVEVETGPPQVPYRET 465 (668)
T ss_pred EEEECCcchHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEE-----ecHHHHHHHHHHHHHHhCceeEecCCeeEEeec
Confidence 9999999999999999999999999999974 788988888 999999999999999999999999999999999
Q ss_pred eeCC---------------e----EEEEe-------------------------------------CC-CCCCCC-----
Q 043429 422 CVNG---------------Q----TVECS-------------------------------------NP-SLLPEP----- 439 (646)
Q Consensus 422 ~~~g---------------~----~~~~~-------------------------------------~p-~~~p~~----- 439 (646)
+.+. . .+.++ .| .++|..
T Consensus 466 i~~~~~~~~~~~~~~~~~~~~~~v~l~~ep~~~~~~~~f~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~p~~~v~v~ 545 (668)
T PRK12740 466 IRKKAEGHGRHKKQSGGHGQFGDVWLEVEPLPRGEGFEFVDKVVGGAVPRQYIPAVEKGVREALEKGVLAGYPVVDVKVT 545 (668)
T ss_pred cCCCccccceeccccCCCCceEEEEEEEEECCCCCceEEeecccCCCccHHHHHHHHHHHHHHHhcCCcCCCceeeEEEE
Confidence 8751 1 12222 12 334431
Q ss_pred -----------cc------------------cccccccEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeCCCEEEEEE
Q 043429 440 -----------GQ------------------RRSIEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIY 490 (646)
Q Consensus 440 -----------~~------------------i~~llEP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~ 490 (646)
++ -..|+||||.++|.+|++|+|+||++|++|||++.+++..+++ +.|++
T Consensus 546 l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~-~~i~a 624 (668)
T PRK12740 546 LTDGSYHSVDSSEMAFKIAARLAFREALPKAKPVLLEPIMKVEVSVPEEFVGDVIGDLSSRRGRILGMESRGGG-DVVRA 624 (668)
T ss_pred EEecccccCCCCHHHHHHHHHHHHHHHHHhcCCeeecceEEEEEEechhhhhhHHHHHHhCCCeEeccccCCCC-EEEEE
Confidence 10 0279999999999999999999999999999999999876644 99999
Q ss_pred EechhhhHhhHHHHhcccCcceEEEEEEEcceeecc
Q 043429 491 ELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKESQ 526 (646)
Q Consensus 491 ~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~~ 526 (646)
.+|++|+ +||.++|||+|+|+|+|+++|+||++.+
T Consensus 625 ~~P~~e~-~g~~~~Lr~~T~G~a~~~~~f~~y~~~~ 659 (668)
T PRK12740 625 EVPLAEM-FGYATDLRSLTQGRGSFSMEFSHYEEVP 659 (668)
T ss_pred EcCHHHh-hchHHHHHHhcCCeEEEEEEecccccCC
Confidence 9999999 8999999999999999999999999853
No 15
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=7.8e-63 Score=571.85 Aligned_cols=433 Identities=28% Similarity=0.400 Sum_probs=352.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCcccccc-ccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCC
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREM-KEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPG 160 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~-~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG 160 (646)
.+++|||+|+||.|||||||+++|++.+|.+.+... ...++|+.+.|+++|+|+.....++.+..++.++.++||||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG 95 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG 95 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence 457899999999999999999999999888876533 3456899999999999999988877666667789999999999
Q ss_pred CccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCC-------
Q 043429 161 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL------- 233 (646)
Q Consensus 161 ~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~------- 233 (646)
|.+|..++.++++.+|++|+|+|+..|+..++...|..+...++|+++|+||+|+..++.....+++++.++-
T Consensus 96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~ 175 (720)
T TIGR00490 96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKIITEVNK 175 (720)
T ss_pred ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhhhHHHHh
Confidence 9999999999999999999999999999999999999988899999999999999876554444444433211
Q ss_pred ------C------------cccccccccccccc----------------------------------hhHHHHHHHHhCC
Q 043429 234 ------D------------CTNAILCSAKEGIG----------------------------------INEILNAIVKRIP 261 (646)
Q Consensus 234 ------~------------~~~i~~vSAk~g~G----------------------------------V~eLl~~I~~~ip 261 (646)
+ ..++.+.|++.+.+ ++.|++.|++++|
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv~~~Lld~i~~~lP 255 (720)
T TIGR00490 176 LIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKSPLHQVVLDMVIRHLP 255 (720)
T ss_pred hhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccHHHHhhhhhHHHHHHHHHHHhCC
Confidence 0 01233445554411 3567999999999
Q ss_pred CCCC-------------------------CCCCCceEEEEEEEeecc-----------------ceEEecCCCceEEc--
Q 043429 262 PPSN-------------------------TAGCPFRALIFDRIIMLM-----------------KLECYPPIKCKWKN-- 297 (646)
Q Consensus 262 ~P~~-------------------------~~~~pl~~~vf~~~~d~~-----------------~~i~~~~~~~~~~v-- 297 (646)
+|.. +++.|+.|.|||+++|++ +.|+.++.++...|
T Consensus 256 sP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~~~kv~~ 335 (720)
T TIGR00490 256 SPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQ 335 (720)
T ss_pred ChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCCeeEeeE
Confidence 9841 235689999999999987 56666655544333
Q ss_pred ----------------cceeeEEEeecccccccccCCeeeecCccccCCCCCc-ccCCceEEeeeeeCCCCCHHHHHHHH
Q 043429 298 ----------------FKQVGYLSASIRSVADARVGDTITHFNRKADNLLPGY-EEATPMVFCGLFPVDADQFPELRDAL 360 (646)
Q Consensus 298 ----------------aG~Vg~i~~~i~~~~~~~~GDtl~~~~~~~~~~l~~~-~~~~p~v~~~i~p~~~~d~~~L~~aL 360 (646)
||||+.+. | ++++.+||||+..+.+.. +++++ ..++|+++++|+|.++.|.++|.+||
T Consensus 336 l~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~~GdtL~~~~~~~~-~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~aL 410 (720)
T TIGR00490 336 VGVYMGPERVEVDEIPAGNIVAVI-G---LKDAVAGETICTTVENIT-PFESIKHISEPVVTVAIEAKNTKDLPKLIEVL 410 (720)
T ss_pred EEEeccCCccCccEECCCCEEEEE-C---ccccccCceeecCCcccc-cCcccccCCCceEEEEEEECCHHHHHHHHHHH
Confidence 99998774 4 457789999987654322 34554 46899999999999999999999999
Q ss_pred HHHhhcCCceEEE--eCCCccccceeEeccchhhHHHHHHHHHHHHcCceEEEecceeEEEEEeeCCe------------
Q 043429 361 EKLQLNDAALKFE--PETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVNCVNGQ------------ 426 (646)
Q Consensus 361 ~kL~~~Dpsl~~~--~e~~~~lg~g~r~gflG~lHlei~~erL~~e~~~~v~~t~P~V~Y~e~~~~g~------------ 426 (646)
++|+++||+|.++ +|+++.++.| +|+|||||+++||+++||+++.+++|+|+||||+.+..
T Consensus 411 ~~L~~eDPsl~v~~d~etge~il~g-----~GElHLei~~~rL~~~~~vev~~~~P~V~YrETi~~~~~~~~~~~~~~~~ 485 (720)
T TIGR00490 411 RQVAKEDPTVHVEINEETGEHLISG-----MGELHLEIIVEKIREDYGLDVETSPPIVVYRETVTGTSPVVEGKSPNKHN 485 (720)
T ss_pred HHHHhhCCeEEEEECCCCCCeEEEE-----ccceeHHHHHHHHHHHhCCceeecCCEEEEEEeccccccceEEEcCCCcE
Confidence 9999999999997 5799998888 99999999999999999999999999999999986520
Q ss_pred --EEEEeC-CC---------------------------------------------------------------------
Q 043429 427 --TVECSN-PS--------------------------------------------------------------------- 434 (646)
Q Consensus 427 --~~~~~~-p~--------------------------------------------------------------------- 434 (646)
++++++ |.
T Consensus 486 ~v~l~iePl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~~gg~i~~~~~~av~~G~~ 565 (720)
T TIGR00490 486 RFYIVVEPLEESVIQAFKEGKIVDMKMKKKERRRLLIEAGMDSEEAARVEEYYEGNLFINMTRGIQYLDETKELILEGFR 565 (720)
T ss_pred EEEEEEEECCcchhhhhhcccccccccchHHHHHHHHhcCCchhhhcCEEEecCCeEEEECCCCCCCHHHHHHHHHHHHH
Confidence 122211 10
Q ss_pred ---------CCCCC------------------ccc------------------ccccccEEEEEEEcccccHHHHHHHHh
Q 043429 435 ---------LLPEP------------------GQR------------------RSIEEPFVKIELLTPKEYIGSLMELAQ 469 (646)
Q Consensus 435 ---------~~p~~------------------~~i------------------~~llEP~~~~~I~~P~e~~g~v~~~~~ 469 (646)
++|.. ++. .+||||||.++|.+|++|+|+|+++|+
T Consensus 566 ~a~~~GpL~g~pv~~v~v~l~d~~~h~~~vds~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~~ei~~p~~~~g~v~~~L~ 645 (720)
T TIGR00490 566 EAMRNGPIAREKCMGVKVKLMDAKLHEDAVHRGPAQVIPAVRSGIFAAMMQAKPVLLEPYQKVFINVPQDMMGAATREIQ 645 (720)
T ss_pred HHHHcCCcCCCcccceEEEEEeeccccccccCccchHHHHHHHHHHHHHHhCCCeEecceEEEEEEccHHHHhHHHHHHh
Confidence 12210 000 289999999999999999999999999
Q ss_pred hcCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeecc
Q 043429 470 DRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKESQ 526 (646)
Q Consensus 470 ~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~~ 526 (646)
+|||++.+++.. ++...|++++|++|+ +||.++|||+|+|.|+|+++|+||++.+
T Consensus 646 ~RRg~i~~~~~~-~~~~~I~A~vP~~e~-fgy~~~Lrs~T~G~a~~~~~f~~y~~vp 700 (720)
T TIGR00490 646 NRRGQILEMKQE-GDMVTIIAKAPVAEM-FGFAGAIRGATSGRCLWSTEHAGFELVP 700 (720)
T ss_pred hCCceeeeeccC-CCcEEEEEEEehHHh-cCCcHHHHhhCCCCceEEEEecccccCC
Confidence 999999998753 467899999999999 9999999999999999999999999864
No 16
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-62 Score=510.53 Aligned_cols=468 Identities=29% Similarity=0.442 Sum_probs=387.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccc-cccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE-MKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH 161 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~-~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~ 161 (646)
..+|||+||+|++||||||++.||.++|+...++ ....++|+.+.|+||||||-+..+.+.|+ ++++|++|||||
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~----~~~INIvDTPGH 78 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYN----GTRINIVDTPGH 78 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecC----CeEEEEecCCCc
Confidence 4579999999999999999999999999998765 46789999999999999999999999998 899999999999
Q ss_pred ccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHh---CCCc---
Q 043429 162 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVI---GLDC--- 235 (646)
Q Consensus 162 ~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l---~~~~--- 235 (646)
.||..++.|.++..|+++|+|||.+|..+||.-.+..|++.+++.|+|+||+|.++++++++.++..++| +.+.
T Consensus 79 ADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQL 158 (603)
T COG1217 79 ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQL 158 (603)
T ss_pred CCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999887775 2221
Q ss_pred -cccccccccccc----------chhHHHHHHHHhCCCCCCCCCCCceEEEEEEEeecc-----------------ceEE
Q 043429 236 -TNAILCSAKEGI----------GINEILNAIVKRIPPPSNTAGCPFRALIFDRIIMLM-----------------KLEC 287 (646)
Q Consensus 236 -~~i~~vSAk~g~----------GV~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~~d~~-----------------~~i~ 287 (646)
-|+++.||+.|. ++..||+.|++++|+|.++.++||+++|....|++| +.+.
T Consensus 159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~ 238 (603)
T COG1217 159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVA 238 (603)
T ss_pred CCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcccCCCeEE
Confidence 268999999885 678899999999999999999999999999999999 3333
Q ss_pred ecCCCce------E-----------Ec----cceeeEEEeecccccccccCCeeeecCccccCCCCCcccCCceEEeeee
Q 043429 288 YPPIKCK------W-----------KN----FKQVGYLSASIRSVADARVGDTITHFNRKADNLLPGYEEATPMVFCGLF 346 (646)
Q Consensus 288 ~~~~~~~------~-----------~v----aG~Vg~i~~~i~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~p~v~~~i~ 346 (646)
++..+.. . ++ ||||.++. ++.++.+|||+++.+++. |||....-+|++...+-
T Consensus 239 ~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaia----G~~~~~igdTi~d~~~~~--aLp~l~iDePTlsMtf~ 312 (603)
T COG1217 239 LIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIA----GLEDINIGDTICDPDNPE--ALPALSVDEPTLSMTFS 312 (603)
T ss_pred EEcCCCcEEeeEEEeeeeccceeeeecccccccCEEEEc----CcccccccccccCCCCcc--CCCCcccCCCceEEEEE
Confidence 4432211 1 11 99987654 468899999999987764 69999888998887765
Q ss_pred eCCCC------C---HHHHHHHHHHHhhcCCceEEEeCCCccccceeEeccchhhHHHHHHHHHHHHcCceEEEecceeE
Q 043429 347 PVDAD------Q---FPELRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVV 417 (646)
Q Consensus 347 p~~~~------d---~~~L~~aL~kL~~~Dpsl~~~~e~~~~lg~g~r~gflG~lHlei~~erL~~e~~~~v~~t~P~V~ 417 (646)
..++. + -.++++.|.+-.+.|.||++++..+.. -|+++..|+|||.|+.|.|+|| |.++.++.|.|.
T Consensus 313 vN~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd---~f~VsGRGELhLsILiE~MRRE-GfEl~VsrP~Vi 388 (603)
T COG1217 313 VNDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPD---AFEVSGRGELHLSILIENMRRE-GFELQVSRPEVI 388 (603)
T ss_pred ecCCCCCCcCCceeeHHHHHHHHHHHhhhceeEEEeecCCCC---eEEEeccceeehHHHHHHhhhc-ceEEEecCceEE
Confidence 54431 2 378999999999999999999655542 4899999999999999999999 999999999999
Q ss_pred EEEEeeCCeEEEEeCCCCCCCCcccccccccEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeCCCEEEEEEEechhhh
Q 043429 418 YRVNCVNGQTVECSNPSLLPEPGQRRSIEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEM 497 (646)
Q Consensus 418 Y~e~~~~g~~~~~~~p~~~p~~~~i~~llEP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~ 497 (646)
||| .+|. .+|||..++|.+|+||.|.||+.+..|+|+..+|...+++|+++.|.+|.+-+
T Consensus 389 ~ke--idG~------------------~~EP~E~v~iDv~ee~~G~Vie~lg~RKgem~~M~~~g~G~~Rlef~iPaRGL 448 (603)
T COG1217 389 IKE--IDGV------------------KCEPFEEVTIDVPEEHQGAVIEKLGERKGEMKDMAPDGKGRVRLEFVIPARGL 448 (603)
T ss_pred EEe--cCCc------------------CcCcceeEEecCchhhhhHHHHHHhhhhHhHhhcccCCCCeEEEEEEccCcce
Confidence 998 3564 58999999999999999999999999999999999888899999999999999
Q ss_pred HhhHHHHhcccCcceEEEEEEEcceeeccceeeeeeccCCccCcceEEEehhhHHHHHHHHHHHHhccCCC-CCceeeeE
Q 043429 498 VGDFFDQLKSRTKGYASMEYTFLGYKESQLIKLDILINGDCVEPLATIVHKDKAYAVGRALTQKLKELIPR-QMFKVPIQ 576 (646)
Q Consensus 498 ~~~f~~~Lks~T~G~as~~~~~~~y~~~~~~k~~il~n~~~~~~l~~~~~~~~~~~~~~~~~~~lk~~i~~-~~~~~~~q 576 (646)
.+|..++-+.|+|+|-++..|++|+|..- .+.=.-||.-|. . + .|.+..=-|..+=.| ++|-=|=+
T Consensus 449 -IGfrteFlt~TrG~Gi~n~~F~~Y~p~~g-~i~~R~nGvLiS------~-~----~G~a~~yal~~lqdRG~~Fi~pG~ 515 (603)
T COG1217 449 -IGFRTEFLTMTRGTGIMNHSFDHYRPVKG-EIGGRHNGVLIS------N-E----TGKAVAYALFNLQDRGKLFIEPGT 515 (603)
T ss_pred -eccchheeeccccceeeeecccccccccc-cccccccceEEE------c-C----CCcchHhhhhhHHhcCceeecCCC
Confidence 69999999999999999999999999664 444445553221 1 1 122222222222233 23333444
Q ss_pred EeeCCeEEEeecccccchhhhhcc
Q 043429 577 ACIGSKVIASEALSAIRKDVLAKC 600 (646)
Q Consensus 577 ~~~~~~~~~~~~~~~~~k~v~~~~ 600 (646)
-.+.|-||. +...-.|.+.+|
T Consensus 516 ~vYeGmiiG---~hsR~nDL~VN~ 536 (603)
T COG1217 516 KVYEGMIIG---EHSRDNDLTVNV 536 (603)
T ss_pred ceeeeeEEe---eecCccCceecc
Confidence 455677776 444445555554
No 17
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=4.2e-61 Score=564.74 Aligned_cols=453 Identities=25% Similarity=0.344 Sum_probs=356.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCcccccc-ccccccccccccccceeeeeeEEEEEEEe------------cC
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREM-KEQFLDNMDLERERGITIKLQAARMRYVF------------EN 148 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~-~~~~~d~~~~e~e~giTi~~~~~~~~~~~------------~~ 148 (646)
+++||||+|+||+|||||||+++|+..++.+.+... ...++|..+.|++||+|+.+...++.|.. ++
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 578999999999999999999999999998876543 45669999999999999999998888852 23
Q ss_pred CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCC-------C----
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP-------G---- 217 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~-------~---- 217 (646)
.++.+||+|||||.||..++.++++.+|++|+|||+.+|++.||...|..+...++|+++++||+|+. .
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~~~~~ 175 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAY 175 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999987 3
Q ss_pred CCchHHHHHHH--------HHhCC----Cc-ccccccccc----------------------------------------
Q 043429 218 AEPSRVAREIE--------EVIGL----DC-TNAILCSAK---------------------------------------- 244 (646)
Q Consensus 218 ~~~~~~~~el~--------~~l~~----~~-~~i~~vSAk---------------------------------------- 244 (646)
++..++++++. +.++- +. ..+++.|+.
T Consensus 176 ~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~~~~ 255 (843)
T PLN00116 176 QTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATK 255 (843)
T ss_pred HHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcCCCc
Confidence 45566666665 21110 00 000000000
Q ss_pred -------------------------------------------ccc--------------------------chhHHHHH
Q 043429 245 -------------------------------------------EGI--------------------------GINEILNA 255 (646)
Q Consensus 245 -------------------------------------------~g~--------------------------GV~eLl~~ 255 (646)
.+. |.+.|++.
T Consensus 256 ~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~~~~pv~~~s~~Lld~ 335 (843)
T PLN00116 256 KWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKRVMQTWLPASDALLEM 335 (843)
T ss_pred eEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHHHHHhhcCChHHHHHH
Confidence 000 22567888
Q ss_pred HHHhCCCCCC-------------------------CCCCCceEEEEEEEeecc------------------ceEEec---
Q 043429 256 IVKRIPPPSN-------------------------TAGCPFRALIFDRIIMLM------------------KLECYP--- 289 (646)
Q Consensus 256 I~~~ip~P~~-------------------------~~~~pl~~~vf~~~~d~~------------------~~i~~~--- 289 (646)
|++++|+|.. +++.|+.|+|||...+++ ++|+.+
T Consensus 336 i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~~v~v~~~n 415 (843)
T PLN00116 336 IIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATGMKVRIMGPN 415 (843)
T ss_pred HHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCCCEEEEeCCC
Confidence 8889998841 235689999999988775 455422
Q ss_pred --------------------CCCceEEc----cceeeEEEeeccccccccc-CCeeeecCccccCCCCCcccC-CceEEe
Q 043429 290 --------------------PIKCKWKN----FKQVGYLSASIRSVADARV-GDTITHFNRKADNLLPGYEEA-TPMVFC 343 (646)
Q Consensus 290 --------------------~~~~~~~v----aG~Vg~i~~~i~~~~~~~~-GDtl~~~~~~~~~~l~~~~~~-~p~v~~ 343 (646)
.+++..+| |||||.+. | +.+..+ ||||++..+....+++++..+ +|++++
T Consensus 416 ~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~-g---l~~~~~~gdTL~~~~~~~~~~l~~~~~~~~Pv~~~ 491 (843)
T PLN00116 416 YVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMV-G---LDQFITKNATLTNEKEVDAHPIKAMKFSVSPVVRV 491 (843)
T ss_pred CCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEE-e---ecccccCCceecCCcccCCccccccccCCCceEEE
Confidence 22222223 99999876 4 445444 999986641111246677777 999999
Q ss_pred eeeeCCCCCHHHHHHHHHHHhhcCCceEEE-eCCCccccceeEeccchhhHHHHHHHHHHHHc--CceEEEecceeEEEE
Q 043429 344 GLFPVDADQFPELRDALEKLQLNDAALKFE-PETSSAMGFGFRCGFLGLLHMEIVQERLEREY--NLSLITTAPSVVYRV 420 (646)
Q Consensus 344 ~i~p~~~~d~~~L~~aL~kL~~~Dpsl~~~-~e~~~~lg~g~r~gflG~lHlei~~erL~~e~--~~~v~~t~P~V~Y~e 420 (646)
+|+|.++.|.++|.+||++|..+||+|.+. .|+++.+..| ||+|||||+++||+++| |+++.+++|.|+|||
T Consensus 492 aIeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g-----~GElHLEi~~~rL~~~f~~~vev~~s~p~V~yrE 566 (843)
T PLN00116 492 AVQCKNASDLPKLVEGLKRLAKSDPMVQCTIEESGEHIIAG-----AGELHLEICLKDLQDDFMGGAEIKVSDPVVSFRE 566 (843)
T ss_pred EEEECChhhHHHHHHHHHHHHHhCCCeEEEEcCCCCEEEEE-----ccHHHHHHHHHHHHHHhhCCCcEEEcCCeEEEEe
Confidence 999999999999999999999999999986 6888988888 99999999999999999 999999999999999
Q ss_pred EeeCC-----------e----EEEEeC-C---------------------------------------------------
Q 043429 421 NCVNG-----------Q----TVECSN-P--------------------------------------------------- 433 (646)
Q Consensus 421 ~~~~g-----------~----~~~~~~-p--------------------------------------------------- 433 (646)
|+.+. . .+++++ |
T Consensus 567 TI~~~~~~~~~~~~~~~~~~v~l~iePl~~~~~~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~gp~~~~~~~ 646 (843)
T PLN00116 567 TVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCFGPETTGPNM 646 (843)
T ss_pred cccccccCcEEEecCCceEEEEEEEEECCHHHHHHHHcCCcccCcchHHHHHHhhhhcCcchhhhcCeeeecCCCCCceE
Confidence 98542 1 122211 0
Q ss_pred -------------------------------CCCCCC---------------c-----cc----------------cccc
Q 043429 434 -------------------------------SLLPEP---------------G-----QR----------------RSIE 446 (646)
Q Consensus 434 -------------------------------~~~p~~---------------~-----~i----------------~~ll 446 (646)
.++|.. . .+ .+||
T Consensus 647 ~~~~~~g~~~~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~~~Al~~a~p~Ll 726 (843)
T PLN00116 647 VVDMCKGVQYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVIYASQLTAKPRLL 726 (843)
T ss_pred EEECCcchhhHHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCcccccchhhHHHHHHHHHHHHHHhCCCEEe
Confidence 011110 0 00 2899
Q ss_pred ccEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeCC-CEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeec
Q 043429 447 EPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTE-SRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKES 525 (646)
Q Consensus 447 EP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~-~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~ 525 (646)
||||.++|.+|++|+|+||++|++|||.+.+++..++ +...|++++|++|+ +||.++|||+|+|+|+|.++|+||++
T Consensus 727 EPi~~veI~~p~~~~G~V~~dL~~RRG~i~~~~~~~~t~~~~I~A~vPl~e~-~gy~~~LRs~T~G~g~~~~~f~~y~~- 804 (843)
T PLN00116 727 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES-FGFSGTLRAATSGQAFPQCVFDHWDM- 804 (843)
T ss_pred eceeEEEEEccHHHHhHHHHHHHhcCCccceeeecCCCceEEEEEEeeHHHH-cCCCHHHHhhCCCCCeEEEEeceeEE-
Confidence 9999999999999999999999999999999886544 34789999999999 89999999999999999999999998
Q ss_pred cceeeeeeccCCccCcceEEEehhhHHHHHHHHHHHHh
Q 043429 526 QLIKLDILINGDCVEPLATIVHKDKAYAVGRALTQKLK 563 (646)
Q Consensus 526 ~~~k~~il~n~~~~~~l~~~~~~~~~~~~~~~~~~~lk 563 (646)
+.++|.|. .+.+|.++.+.+
T Consensus 805 --------v~~dp~~~----------~~~a~~~~~~~R 824 (843)
T PLN00116 805 --------MSSDPLEA----------GSQAAQLVADIR 824 (843)
T ss_pred --------CCCCCCCc----------hhHHHHHHHHHH
Confidence 56777663 466788877654
No 18
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=4.4e-59 Score=546.55 Aligned_cols=450 Identities=26% Similarity=0.395 Sum_probs=354.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccc-cccccccccccccceeeeeeEEEEEEEec------CCCeEEE
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMK-EQFLDNMDLERERGITIKLQAARMRYVFE------NEPFCLN 154 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~-~~~~d~~~~e~e~giTi~~~~~~~~~~~~------~~~~~l~ 154 (646)
++++|||+|+||+|||||||+++|+..++.+.+...+ ..++|+.+.|++||+|+.+....+.|... +.++.++
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 4679999999999999999999999999888765543 35689999999999999998888888632 3468899
Q ss_pred EEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCC----C-------CCchHH
Q 043429 155 LIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP----G-------AEPSRV 223 (646)
Q Consensus 155 liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~----~-------~~~~~~ 223 (646)
|+|||||.+|..++.++++.+|++|+|+|+.+|++.||...|..+...++|+++|+||+|+. + ++..++
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~~~~~~i 175 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIYQNFVKT 175 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997 3 555666
Q ss_pred HHHHHHHhC--------C---Ccc--cccccccc----------------------------------------------
Q 043429 224 AREIEEVIG--------L---DCT--NAILCSAK---------------------------------------------- 244 (646)
Q Consensus 224 ~~el~~~l~--------~---~~~--~i~~vSAk---------------------------------------------- 244 (646)
++++...++ - .+. .+...|+.
T Consensus 176 i~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~~~~~~~~~~ 255 (836)
T PTZ00416 176 IENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAKTKKWIKDE 255 (836)
T ss_pred HHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccCCCCEEEecc
Confidence 666664332 0 000 00000000
Q ss_pred ---------------------------------------c--c---------c---c------------hhHHHHHHHHh
Q 043429 245 ---------------------------------------E--G---------I---G------------INEILNAIVKR 259 (646)
Q Consensus 245 ---------------------------------------~--g---------~---G------------V~eLl~~I~~~ 259 (646)
. | . + ++.|++.|+++
T Consensus 256 ~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~~~~~Pv~~~Lld~i~~~ 335 (836)
T PTZ00416 256 TNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVMQKWLPAADTLLEMIVDH 335 (836)
T ss_pred CCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHHHHHhchHHHHHHHHHHh
Confidence 0 0 0 0 14578888889
Q ss_pred CCCCCC-------------------------CCCCCceEEEEEEEeecc------------------ceEEec-------
Q 043429 260 IPPPSN-------------------------TAGCPFRALIFDRIIMLM------------------KLECYP------- 289 (646)
Q Consensus 260 ip~P~~-------------------------~~~~pl~~~vf~~~~d~~------------------~~i~~~------- 289 (646)
+|+|.. +++.|+.|+|||...|++ ++|+.+
T Consensus 336 lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~g~~v~v~~~~~~~~ 415 (836)
T PTZ00416 336 LPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKVRIQGPNYVPG 415 (836)
T ss_pred CCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeeecCCCEEEEeCCCCCCC
Confidence 999841 234689999999998886 444421
Q ss_pred ----------------CCCceEEc----cceeeEEEeecccccc--cccCCeeeecCccccCCCCCcccC-CceEEeeee
Q 043429 290 ----------------PIKCKWKN----FKQVGYLSASIRSVAD--ARVGDTITHFNRKADNLLPGYEEA-TPMVFCGLF 346 (646)
Q Consensus 290 ----------------~~~~~~~v----aG~Vg~i~~~i~~~~~--~~~GDtl~~~~~~~~~~l~~~~~~-~p~v~~~i~ 346 (646)
.+.+..+| |||||.+. | +++ .++| ||+...... +++++..+ +|+++++|+
T Consensus 416 ~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~-g---l~~~~~~tg-TL~~~~~~~--~l~~i~~~~~Pv~~vaIe 488 (836)
T PTZ00416 416 KKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLV-G---VDQYLVKSG-TITTSETAH--NIRDMKYSVSPVVRVAVE 488 (836)
T ss_pred CcccchheecceeEEecCCCceECcEECCCCEEEEE-e---cccceecce-eecCCCCcc--cccccccCCCCeEEEEEE
Confidence 11122222 99998775 4 445 7899 997654332 35666665 999999999
Q ss_pred eCCCCCHHHHHHHHHHHhhcCCceEEE-eCCCccccceeEeccchhhHHHHHHHHHHHHc-CceEEEecceeEEEEEeeC
Q 043429 347 PVDADQFPELRDALEKLQLNDAALKFE-PETSSAMGFGFRCGFLGLLHMEIVQERLEREY-NLSLITTAPSVVYRVNCVN 424 (646)
Q Consensus 347 p~~~~d~~~L~~aL~kL~~~Dpsl~~~-~e~~~~lg~g~r~gflG~lHlei~~erL~~e~-~~~v~~t~P~V~Y~e~~~~ 424 (646)
|.++.|.++|.+||++|.++||+|.+. .||++.+..| ||+||||++++||+++| |+++.++.|.|+||||+.+
T Consensus 489 p~~~~d~~kL~~aL~~L~~eDPsl~~~~~etgE~il~g-----~GElHLei~l~~L~~~f~~vev~~s~P~V~yrETI~~ 563 (836)
T PTZ00416 489 PKNPKDLPKLVEGLKRLAKSDPLVVCTTEESGEHIVAG-----CGELHVEICLKDLEDDYANIDIIVSDPVVSYRETVTE 563 (836)
T ss_pred ECCHHHHHHHHHHHHHHHhhCCceEEEEcCCCCeEEEe-----CcHhHHHHHHHHHHHHhcCcceEecCCEEEEEEEecc
Confidence 999999999999999999999999986 7888988888 99999999999999999 9999999999999999954
Q ss_pred C-------------e--EEEEeC---------------------------------------------------------
Q 043429 425 G-------------Q--TVECSN--------------------------------------------------------- 432 (646)
Q Consensus 425 g-------------~--~~~~~~--------------------------------------------------------- 432 (646)
. . .+.+++
T Consensus 564 ~s~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~g~nil~~~ 643 (836)
T PTZ00416 564 ESSQTCLSKSPNKHNRLYMKAEPLTEELAEAIEEGKVGPEDDPKERANFLADKYEWDKNDARKIWCFGPENKGPNVLVDV 643 (836)
T ss_pred cccceEEEECCCCCeeEEEEEEECCHHHHhHhhcCccccccchhHHHhhhhcccCcchhhhhCeeeccCCCCCCcEEEec
Confidence 2 0 122210
Q ss_pred --CC------------------------CCCCC------------cc-c-----------------------ccccccEE
Q 043429 433 --PS------------------------LLPEP------------GQ-R-----------------------RSIEEPFV 450 (646)
Q Consensus 433 --p~------------------------~~p~~------------~~-i-----------------------~~llEP~~ 450 (646)
|. ++|.. ++ + .+||||||
T Consensus 644 ~~~~~~~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~~~a~~~a~~~a~p~LlEPi~ 723 (836)
T PTZ00416 644 TKGVQYMNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFYACELTASPRLLEPMF 723 (836)
T ss_pred CCcccchHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccccccccchHHHHHHHHHHHHHHHhhCCCEEEeeeE
Confidence 10 11210 00 0 28999999
Q ss_pred EEEEEcccccHHHHHHHHhhcCceEeeeeeeCCC-EEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeecccee
Q 043429 451 KIELLTPKEYIGSLMELAQDRRGEFKEMKYFTES-RASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKESQLIK 529 (646)
Q Consensus 451 ~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~-~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~~~~k 529 (646)
.++|.+|++|+|+|+++|++|||.+.+++..+++ ..+|++.+|++|+ +||.++|||+|+|.|+|.++|+||++
T Consensus 724 ~veI~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a~vP~~e~-~gy~~~LRs~T~G~g~~~~~F~~y~~----- 797 (836)
T PTZ00416 724 LVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAES-FGFTAALRAATSGQAFPQCVFDHWQV----- 797 (836)
T ss_pred EEEEEEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEEEEehHHh-cCCCHHHHhhCcCCceEEEEeccEEE-----
Confidence 9999999999999999999999999998875543 4899999999999 89999999999999999999999998
Q ss_pred eeeeccCCccCcceEEEehhhHHHHHHHHHHHHh
Q 043429 530 LDILINGDCVEPLATIVHKDKAYAVGRALTQKLK 563 (646)
Q Consensus 530 ~~il~n~~~~~~l~~~~~~~~~~~~~~~~~~~lk 563 (646)
++++|.|. ...+|.++.+.+
T Consensus 798 ----vp~dp~~~----------~~~a~~~~~~~R 817 (836)
T PTZ00416 798 ----VPGDPLEP----------GSKANEIVLSIR 817 (836)
T ss_pred ----CCCCCCCc----------hhHHHHHHHHHH
Confidence 45556555 456777776654
No 19
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.1e-58 Score=468.25 Aligned_cols=433 Identities=30% Similarity=0.454 Sum_probs=359.5
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccc---cccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEe
Q 043429 81 PASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE---MKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLID 157 (646)
Q Consensus 81 ~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~---~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liD 157 (646)
++.++|||+|++|.++||||..+|+++..|.+...+ .++++.|.+..||+||||+.+..+.+.|+ ++++|+||
T Consensus 33 ~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwk----g~rinlid 108 (753)
T KOG0464|consen 33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWK----GHRINLID 108 (753)
T ss_pred chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccc----cceEeeec
Confidence 446789999999999999999999999998887654 47899999999999999999999999998 99999999
Q ss_pred CCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCc--
Q 043429 158 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDC-- 235 (646)
Q Consensus 158 TPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~-- 235 (646)
||||+||.-++.+.++..||++.|+|++.|+++||+..|.++-+.++|.++++||||...++++...+.+++.++..+
T Consensus 109 tpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~ 188 (753)
T KOG0464|consen 109 TPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALK 188 (753)
T ss_pred CCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEE
Confidence 999999999999999999999999999999999999999999999999999999999999888888888877765321
Q ss_pred --------------------------------------------------------------------------------
Q 043429 236 -------------------------------------------------------------------------------- 235 (646)
Q Consensus 236 -------------------------------------------------------------------------------- 235 (646)
T Consensus 189 l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~ 268 (753)
T KOG0464|consen 189 LQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFD 268 (753)
T ss_pred EEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhh
Confidence
Q ss_pred ------------------------ccccccccccccchhHHHHHHHHhCCCCCCCC-------CCCceEEEEEEEeecc-
Q 043429 236 ------------------------TNAILCSAKEGIGINEILNAIVKRIPPPSNTA-------GCPFRALIFDRIIMLM- 283 (646)
Q Consensus 236 ------------------------~~i~~vSAk~g~GV~eLl~~I~~~ip~P~~~~-------~~pl~~~vf~~~~d~~- 283 (646)
.++.+.||.++.||..|++++.-++|+|+... ...+.|+.|++.+|..
T Consensus 269 ~n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeernyeflqwykddlcalafkvlhdkqr 348 (753)
T KOG0464|consen 269 ENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERNYEFLQWYKDDLCALAFKVLHDKQR 348 (753)
T ss_pred ccccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhcchHHHhhhhhhHHHHhhhhhccccc
Confidence 05788999999999999999999999997432 2346677788777764
Q ss_pred -----ceEEe-----------cCCC--------------ceEEc----cceeeEEEeecccccccccCCeeeecCcccc-
Q 043429 284 -----KLECY-----------PPIK--------------CKWKN----FKQVGYLSASIRSVADARVGDTITHFNRKAD- 328 (646)
Q Consensus 284 -----~~i~~-----------~~~~--------------~~~~v----aG~Vg~i~~~i~~~~~~~~GDtl~~~~~~~~- 328 (646)
++||. .++. ...+| ||+|...+ | ++...+|||+......+.
T Consensus 349 g~l~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsagnialt~-g---lk~tatgdtivaskasa~a 424 (753)
T KOG0464|consen 349 GPLSFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAGNIALTA-G---LKHTATGDTIVASKASAEA 424 (753)
T ss_pred CceeEEEEecccccCceeeeecccccccchHhhhccchhhhhhhhhcccccEEEEe-c---ceeeccCCeEEecchhHHH
Confidence 22221 1111 11111 99986554 4 567889999976443221
Q ss_pred ---------------------CCCCCcccCCceEEeeeeeCCCCCHHHHHHHHHHHhhcCCceEEE--eCCCccccceeE
Q 043429 329 ---------------------NLLPGYEEATPMVFCGLFPVDADQFPELRDALEKLQLNDAALKFE--PETSSAMGFGFR 385 (646)
Q Consensus 329 ---------------------~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~~~--~e~~~~lg~g~r 385 (646)
--+.|++.|.|+.||.|+|..-....++..||+-|+.||||+++. +++++++..|
T Consensus 425 a~qk~~~egekk~~q~~daerll~agie~pd~vffc~iepps~~k~~d~ehale~lqredpslkir~d~dsgqtil~~-- 502 (753)
T KOG0464|consen 425 AAQKAAGEGEKKHLQNKDAERLLFAGIEIPDAVFFCCIEPPSLRKLNDFEHALECLQREDPSLKIRFDPDSGQTILCG-- 502 (753)
T ss_pred HHHHhhccchhhccCCccccceeeecccCCCceEEEeccCcccccchhHHHHHHHHhccCCceeEEecCCCCceEEec--
Confidence 015788999999999999999999999999999999999999875 8899888777
Q ss_pred eccchhhHHHHHHHHHHHHcCceEEEecceeEEEEEeeC------------C-----eEE------------------EE
Q 043429 386 CGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVNCVN------------G-----QTV------------------EC 430 (646)
Q Consensus 386 ~gflG~lHlei~~erL~~e~~~~v~~t~P~V~Y~e~~~~------------g-----~~~------------------~~ 430 (646)
||+||+|++.+|++||||+++.+++-+|.|||++.+ | +.+ ++
T Consensus 503 ---~gelhie~ihdrikrey~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~~~velear~~~tqa~ip~kkief 579 (753)
T KOG0464|consen 503 ---MGELHIEAIHDRIKREYGLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHLEFVELEARLEETQAHIPFKKIEF 579 (753)
T ss_pred ---cchhhHHHHHHHHHhhcCchheehhHHHHHHHHHHHHhhhhhhhhccccccccceEEEEEeeeccccccccceeEEe
Confidence 999999999999999999999999999999998853 1 111 11
Q ss_pred e-----C----------------------C-CCCCCC-------------ccc---------------------cccccc
Q 043429 431 S-----N----------------------P-SLLPEP-------------GQR---------------------RSIEEP 448 (646)
Q Consensus 431 ~-----~----------------------p-~~~p~~-------------~~i---------------------~~llEP 448 (646)
+ | | .+.|.- ..+ .+++||
T Consensus 580 e~~es~n~~~l~~sqeaie~g~~na~~~gpl~g~pi~~v~itl~~~~i~~gk~n~alisac~qkcvqealkkad~~l~ep 659 (753)
T KOG0464|consen 580 ELAESANEGLLDVSQEAIEEGCHNACLNGPLAGSPIHAVAITLHECIIHGGKINPALISACAQKCVQEALKKADKQLLEP 659 (753)
T ss_pred eccccccchhhhhHHHHHHhhHHHHHhcCCccCCchhheeEeeEEEEecCCcCCHHHHHHHHHHHHHHHHhhhhHHHhhh
Confidence 1 0 0 012210 000 289999
Q ss_pred EEEEEEEccc-ccHHHHHHHHhhcCceEeeeeeeCCCEE-EEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeecc
Q 043429 449 FVKIELLTPK-EYIGSLMELAQDRRGEFKEMKYFTESRA-SLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKESQ 526 (646)
Q Consensus 449 ~~~~~I~~P~-e~~g~v~~~~~~rrG~~~~~~~~~~~~~-~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~~ 526 (646)
.|+++|.+-. +|+..|+.++..|||.+.+++...++.+ +|.+.+||+|+ .+|...||++|+|+|.|..+|.+||...
T Consensus 660 lm~lei~i~~dd~~qpiladl~qrr~~~e~~~aredneirri~~~lplaei-~~~s~~lrtltsg~a~~ale~~~yqamn 738 (753)
T KOG0464|consen 660 LMELEIEIANDDPLQPILADLAQRRAHFEEIDAREDNEIRRICAFLPLAEI-EGLSKTLRTLTSGFADFALEFRGYQAMN 738 (753)
T ss_pred hhheEEEEecCCCccHHHHHHHHhhccchhcccccccchheeeEeeeHHHh-hcHHHHHHHHhcccceEEEEecchhhcC
Confidence 9999999977 9999999999999999999877654544 68899999998 8999999999999999999999999865
Q ss_pred c
Q 043429 527 L 527 (646)
Q Consensus 527 ~ 527 (646)
.
T Consensus 739 ~ 739 (753)
T KOG0464|consen 739 E 739 (753)
T ss_pred h
Confidence 4
No 20
>PF06421 LepA_C: GTP-binding protein LepA C-terminus; InterPro: IPR013842 LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function of the proteins in this family is unknown. This entry represents the C-terminal region of these proteins [].; PDB: 2YWF_A 2YWE_A 2YWG_A 2YWH_A 3CB4_F 3DEG_C.
Probab=100.00 E-value=1.9e-57 Score=388.11 Aligned_cols=108 Identities=69% Similarity=1.053 Sum_probs=54.6
Q ss_pred ccCCccCcceEEEehhhHHHHHHHHHHHHhccCCCCCceeeeEEeeCCeEEEeecccccchhhhhcccCCchhHhHHhHH
Q 043429 534 INGDCVEPLATIVHKDKAYAVGRALTQKLKELIPRQMFKVPIQACIGSKVIASEALSAIRKDVLAKCYGGDISRKKKLLK 613 (646)
Q Consensus 534 ~n~~~~~~l~~~~~~~~~~~~~~~~~~~lk~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~k~v~~~~~ggd~~rk~kll~ 613 (646)
|||++|||||+||||++|+++||.||+|||++||||||+|+|||+||+||||||||+||||||||||||||||||+|||+
T Consensus 1 iN~~~VdaLs~ivhr~~a~~~gr~~v~kLK~~IPRq~fev~IQA~ig~kiIARetI~a~RKdV~akcyGGDisRK~KLL~ 80 (108)
T PF06421_consen 1 INGEPVDALSFIVHRSKAQRRGREIVEKLKELIPRQQFEVPIQAAIGGKIIARETIKALRKDVTAKCYGGDISRKKKLLE 80 (108)
T ss_dssp ETTCEEGGGEEEEECCCHHHHHHHHHHHHHHHS-S-SS-EEEEEEETTEEEEEEEE----TT------------------
T ss_pred CCCCCcchhhhhhhHHHHHHHHHHHHHHHHHhcCHHHhhhhhhHHhCCeeEEecccHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhchhhhhccCceecCHHHHHHHHhc
Q 043429 614 KQAEGKKRMKAIGKVDVPQEAFMAVLKL 641 (646)
Q Consensus 614 ~q~~gk~~~~~~~~~~~~~~~~~~~~~~ 641 (646)
||||||||||++|+|+||||||+++|++
T Consensus 81 kQK~GKKrmk~iG~V~ipqeaF~~vL~~ 108 (108)
T PF06421_consen 81 KQKEGKKRMKQIGNVEIPQEAFLAVLKI 108 (108)
T ss_dssp ----------------------------
T ss_pred HHHHhHHHHhccCCEeeCHHHHHHHHcC
Confidence 9999999999999999999999999974
No 21
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=9.1e-49 Score=437.02 Aligned_cols=323 Identities=29% Similarity=0.418 Sum_probs=273.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCcccccc-------ccccccccccccccceeeeeeEEEEEEEecCCCeEEEE
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREM-------KEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNL 155 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~-------~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~l 155 (646)
+++|||+|+||+|+|||||+++|+..++.+...+. ....+|+++.|++||+|+......+.|. ++.+++
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~----~~~inl 83 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYR----DCLINL 83 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEEC----CEEEEE
Confidence 56899999999999999999999998888765432 2345899999999999999999888887 899999
Q ss_pred EeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCC-
Q 043429 156 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLD- 234 (646)
Q Consensus 156 iDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~- 234 (646)
||||||.+|..++.++++.+|++|+|+|++++++.++...|..+...++|+++|+||+|+.+++..++.+++++.++.+
T Consensus 84 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~~ 163 (526)
T PRK00741 84 LDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGIAC 163 (526)
T ss_pred EECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999988888999999999999999888777777766654421
Q ss_pred --------------------------------------------------------------------------------
Q 043429 235 -------------------------------------------------------------------------------- 234 (646)
Q Consensus 235 -------------------------------------------------------------------------------- 234 (646)
T Consensus 164 ~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~~ 243 (526)
T PRK00741 164 APITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNEFDLEAF 243 (526)
T ss_pred eeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHHH
Confidence
Q ss_pred ----cccccccccccccchhHHHHHHHHhCCCCCCC---------CCCCceEEEEEEEe---ecc---------------
Q 043429 235 ----CTNAILCSAKEGIGINEILNAIVKRIPPPSNT---------AGCPFRALIFDRII---MLM--------------- 283 (646)
Q Consensus 235 ----~~~i~~vSAk~g~GV~eLl~~I~~~ip~P~~~---------~~~pl~~~vf~~~~---d~~--------------- 283 (646)
..|+++.||.+|.||.+|++.|++++|+|... .+.+|.|+|||+.. ++|
T Consensus 244 ~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafvRV~sG~l~ 323 (526)
T PRK00741 244 LAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFVRVCSGKFE 323 (526)
T ss_pred hcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEEEEeccEEC
Confidence 01588999999999999999999999999632 24579999999984 344
Q ss_pred --ceEEecCCCceEEc------------------cceeeEEEeecccccccccCCeeeecCccccCCCCCcccCCceEEe
Q 043429 284 --KLECYPPIKCKWKN------------------FKQVGYLSASIRSVADARVGDTITHFNRKADNLLPGYEEATPMVFC 343 (646)
Q Consensus 284 --~~i~~~~~~~~~~v------------------aG~Vg~i~~~i~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~p~v~~ 343 (646)
+.++....|+...+ ||||+.+. +++++++||||+... +. .+++++.+.|++++
T Consensus 324 ~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~----~l~~~~~GDTL~~~~-~~--~~~~i~~~~P~~~~ 396 (526)
T PRK00741 324 KGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLH----NHGTIQIGDTFTQGE-KL--KFTGIPNFAPELFR 396 (526)
T ss_pred CCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEEE----CCCCCccCCCccCCC-cc--ccCCCCCCCccEEE
Confidence 44544444444333 99997654 678999999998755 32 36788888999999
Q ss_pred eeeeCCCCCHHHHHHHHHHHhhcCCceEEE--eCCCccccceeEeccchhhHHHHHHHHHHHHcCceEEEecceeEEEEE
Q 043429 344 GLFPVDADQFPELRDALEKLQLNDAALKFE--PETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVN 421 (646)
Q Consensus 344 ~i~p~~~~d~~~L~~aL~kL~~~Dpsl~~~--~e~~~~lg~g~r~gflG~lHlei~~erL~~e~~~~v~~t~P~V~Y~e~ 421 (646)
+++|.++.|+++|.+||++|++||+ +++. +++++ +.+|++|+|||||+++||++|||+++.+++|+|++---
T Consensus 397 ~v~p~~~~d~~kl~~aL~~L~eED~-l~~~~~~~t~e-----~il~g~G~lhleV~~~RL~~ey~v~v~~~~~~v~~~rw 470 (526)
T PRK00741 397 RVRLKNPLKQKQLQKGLVQLSEEGA-VQVFRPLDNND-----LILGAVGQLQFEVVAHRLKNEYNVEAIYEPVGVATARW 470 (526)
T ss_pred EEEECCchhHHHHHHHHHHHhhcCC-eEEEECCCCCC-----EEEEEEeHHHHHHHHHHHHHHhCCEEEEecCCccEEEE
Confidence 9999999999999999999999995 8876 45544 66777999999999999999999999999999998654
Q ss_pred e
Q 043429 422 C 422 (646)
Q Consensus 422 ~ 422 (646)
+
T Consensus 471 ~ 471 (526)
T PRK00741 471 V 471 (526)
T ss_pred E
Confidence 4
No 22
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=3.5e-48 Score=432.44 Aligned_cols=320 Identities=26% Similarity=0.385 Sum_probs=271.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCcccccc-------ccccccccccccccceeeeeeEEEEEEEecCCCeEEEE
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREM-------KEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNL 155 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~-------~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~l 155 (646)
.++|||+|+||+|+|||||+++|+..++.+...+. ..+.+|+++.|++||+|+......+.|. ++.+++
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~----~~~inl 84 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYR----DCLVNL 84 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeC----CeEEEE
Confidence 56899999999999999999999998887765432 2478999999999999999998888887 899999
Q ss_pred EeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCc
Q 043429 156 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDC 235 (646)
Q Consensus 156 iDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~ 235 (646)
||||||.+|..++.++++.+|++|+|+|+++++..++...|..+...++|+++|+||+|+..++..++.+++++.++...
T Consensus 85 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~~~ 164 (527)
T TIGR00503 85 LDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKINC 164 (527)
T ss_pred EECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999888888888999999999999987777777666666554310
Q ss_pred --------------------------------------------------------------------------------
Q 043429 236 -------------------------------------------------------------------------------- 235 (646)
Q Consensus 236 -------------------------------------------------------------------------------- 235 (646)
T Consensus 165 ~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~~~~~~ 244 (527)
T TIGR00503 165 APITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAAF 244 (527)
T ss_pred ccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccccCHHHH
Confidence
Q ss_pred -----ccccccccccccchhHHHHHHHHhCCCCCCC---------CCCCceEEEEEEEe--ec-c---------------
Q 043429 236 -----TNAILCSAKEGIGINEILNAIVKRIPPPSNT---------AGCPFRALIFDRII--ML-M--------------- 283 (646)
Q Consensus 236 -----~~i~~vSAk~g~GV~eLl~~I~~~ip~P~~~---------~~~pl~~~vf~~~~--d~-~--------------- 283 (646)
.|+++.||.++.||++|++.|++++|+|... .+.+|.|+|||+.. || |
T Consensus 245 ~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf~RV~sG~l~ 324 (527)
T TIGR00503 245 HGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAFMRVVSGKYE 324 (527)
T ss_pred hcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEEEEEeeeEEc
Confidence 1458899999999999999999999999642 24689999999977 85 5
Q ss_pred --ceEEecCCCceEEc------------------cceeeEEEeecccccccccCCeeeecCccccCCCCCcccCCceEEe
Q 043429 284 --KLECYPPIKCKWKN------------------FKQVGYLSASIRSVADARVGDTITHFNRKADNLLPGYEEATPMVFC 343 (646)
Q Consensus 284 --~~i~~~~~~~~~~v------------------aG~Vg~i~~~i~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~p~v~~ 343 (646)
++++....|+...+ ||||+.+. +++++++||||+... +. .+++++.+.|++++
T Consensus 325 ~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~----~~~~~~~GDtl~~~~-~~--~~~~i~~~~P~~~~ 397 (527)
T TIGR00503 325 KGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGLH----NHGTIQIGDTFTQGE-KI--KFTGIPNFAPELFR 397 (527)
T ss_pred CCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEEE----CCCCcccCCEecCCC-ce--eecCCCCCCcceEE
Confidence 45555555554443 99997654 678999999998843 32 36777888999999
Q ss_pred eeeeCCCCCHHHHHHHHHHHhhcCCceEEE--eCCCccccceeEeccchhhHHHHHHHHHHHHcCceEEEecceeEEE
Q 043429 344 GLFPVDADQFPELRDALEKLQLNDAALKFE--PETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYR 419 (646)
Q Consensus 344 ~i~p~~~~d~~~L~~aL~kL~~~Dpsl~~~--~e~~~~lg~g~r~gflG~lHlei~~erL~~e~~~~v~~t~P~V~Y~ 419 (646)
++.|.++.|+++|.+||++|++||| +++. +++++ +.+|++|+|||||+++||++|||+++.+++|+|+.-
T Consensus 398 ~v~~~~~~d~~kl~~aL~~L~eED~-l~v~~~~~t~e-----~il~g~GelhleV~~~RL~~ey~v~v~~~~~~v~~~ 469 (527)
T TIGR00503 398 RIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPLDNND-----LIVGAVGVLQFDVVVYRLKEEYNVEARYEPVNVATA 469 (527)
T ss_pred EEEECChhhHHHHHHHHHHHHhhCC-eEEEEcCCCCC-----EEEEEEeHHHHHHHHHHHHHHhCCeEEEeCCCceEE
Confidence 9999999999999999999999998 8876 45655 556669999999999999999999999999999753
No 23
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-45 Score=385.19 Aligned_cols=463 Identities=27% Similarity=0.353 Sum_probs=338.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCcccc-ccccccccccccccccceeeeeeEEEEEEEe------------cC
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKR-EMKEQFLDNMDLERERGITIKLQAARMRYVF------------EN 148 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~-~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~------------~~ 148 (646)
..+|||+++|+|++||||||.+.|....|.+... .....++|...-|++|||||++...++.+.. ++
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 4679999999999999999999999999888744 3457899999999999999999999987753 33
Q ss_pred CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCC----CCchHHH
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPG----AEPSRVA 224 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~----~~~~~~~ 224 (646)
.++.+||||.|||.||++++..+|+..||+++|||.-+|+..||...+.+++...+.-++|+||+|..- ...++..
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~~EeLy 175 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQLSQEELY 175 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHHhhcCCHHHHH
Confidence 678999999999999999999999999999999999999999999999999999988899999999531 2223333
Q ss_pred HHHHHHhC-CCc-----------------c--------------------------------------------------
Q 043429 225 REIEEVIG-LDC-----------------T-------------------------------------------------- 236 (646)
Q Consensus 225 ~el~~~l~-~~~-----------------~-------------------------------------------------- 236 (646)
+-+++... ++. +
T Consensus 176 qtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~f~~ktk 255 (842)
T KOG0469|consen 176 QTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNFFNPKTK 255 (842)
T ss_pred HHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhcccccCccCC
Confidence 32322210 000 0
Q ss_pred ------------------------cc-------------------------cccccccccc--------------hhHHH
Q 043429 237 ------------------------NA-------------------------ILCSAKEGIG--------------INEIL 253 (646)
Q Consensus 237 ------------------------~i-------------------------~~vSAk~g~G--------------V~eLl 253 (646)
|+ +..--++++| -+.++
T Consensus 256 k~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~wLPAadall 335 (842)
T KOG0469|consen 256 KWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRKWLPAADALL 335 (842)
T ss_pred cccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHHHHHHHhcchHHHHH
Confidence 00 0011122222 13467
Q ss_pred HHHHHhCCCCC-------------------------CCCCCCceEEEEEEEe--ec-----c-----------ceEEecC
Q 043429 254 NAIVKRIPPPS-------------------------NTAGCPFRALIFDRII--ML-----M-----------KLECYPP 290 (646)
Q Consensus 254 ~~I~~~ip~P~-------------------------~~~~~pl~~~vf~~~~--d~-----~-----------~~i~~~~ 290 (646)
+.|.-++|+|. .++++|+.+.|.+..- |. | .+++++.
T Consensus 336 emIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRVFsG~v~~G~KvRiqg 415 (842)
T KOG0469|consen 336 EMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVFTGLKVRIQG 415 (842)
T ss_pred HHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeeeecceeccCcEEEEeC
Confidence 77777788872 3677888877766321 21 1 2333221
Q ss_pred C----CceEE-------------------c----cceeeEEEeecccccccccCCeeeecCccccCCCCCccc-CCceEE
Q 043429 291 I----KCKWK-------------------N----FKQVGYLSASIRSVADARVGDTITHFNRKADNLLPGYEE-ATPMVF 342 (646)
Q Consensus 291 ~----~~~~~-------------------v----aG~Vg~i~~~i~~~~~~~~GDtl~~~~~~~~~~l~~~~~-~~p~v~ 342 (646)
. |++.. | +|+|.-++ |+. .-+.-+-||+.....- -+.-+++ ..|+|.
T Consensus 416 PnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlv-GvD--qfLvKtGTiTt~e~AH--NmrvMKFSVSPVV~ 490 (842)
T KOG0469|consen 416 PNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLV-GVD--QFLVKTGTITTSEAAH--NMRVMKFSVSPVVR 490 (842)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEe-ehh--HhhhccCceeehhhhc--cceEEEeeccceEE
Confidence 1 11100 0 67643232 221 1122233555432211 1222333 479999
Q ss_pred eeeeeCCCCCHHHHHHHHHHHhhcCCceEEE-eCCCccccceeEeccchhhHHHHHHHHHHHHc-CceEEEecceeEEEE
Q 043429 343 CGLFPVDADQFPELRDALEKLQLNDAALKFE-PETSSAMGFGFRCGFLGLLHMEIVQERLEREY-NLSLITTAPSVVYRV 420 (646)
Q Consensus 343 ~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~~~-~e~~~~lg~g~r~gflG~lHlei~~erL~~e~-~~~v~~t~P~V~Y~e 420 (646)
.++.+.++.|..+|.+.|.||+..||-+.+. .|+++.+..| -|+|||||++..|++.| ++.+..+.|-|.|||
T Consensus 491 VAVe~Knp~DLpKLvEGLkrLakSDP~v~~~~~esGehiiAg-----aGeLHLEICLkDLeedhA~iPlk~sdPvVsYrE 565 (842)
T KOG0469|consen 491 VAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAG-----AGELHLEICLKDLEEDHACIPLKKSDPVVSYRE 565 (842)
T ss_pred EEEecCChhhhHHHHHHHHHHhccCCeEEEEeccCCceEEec-----cchhhHHHHHhhHhhcccCCceecCCCeeeeec
Confidence 9999999999999999999999999999987 6788888888 99999999999999998 999999999999999
Q ss_pred EeeCCe------------------------------------------------------------EEEEeCCCCCCC--
Q 043429 421 NCVNGQ------------------------------------------------------------TVECSNPSLLPE-- 438 (646)
Q Consensus 421 ~~~~g~------------------------------------------------------------~~~~~~p~~~p~-- 438 (646)
++.... .|++..|..-+.
T Consensus 566 tvs~~ss~~~lsKSpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKIWCfgPd~tg~Nl 645 (842)
T KOG0469|consen 566 TVSEESSQTCLSKSPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARKIWCFGPDGTGPNL 645 (842)
T ss_pred ccccccchhhhccCCcccceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCchhhhheeeEeCCCCCCCcE
Confidence 985310 111111111000
Q ss_pred -------------------------------C-------------------------ccc----------------cccc
Q 043429 439 -------------------------------P-------------------------GQR----------------RSIE 446 (646)
Q Consensus 439 -------------------------------~-------------------------~~i----------------~~ll 446 (646)
. +.| ..|+
T Consensus 646 l~D~TK~vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~~ya~~l~A~P~l~ 725 (842)
T KOG0469|consen 646 LVDQTKGVQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRVLYASVLTAGPILQ 725 (842)
T ss_pred EEecchhhHHHHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhhcCCCeechHHHHHHHHHHHhcCceec
Confidence 0 000 1899
Q ss_pred ccEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeC-CCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeec
Q 043429 447 EPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFT-ESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKES 525 (646)
Q Consensus 447 EP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~-~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~ 525 (646)
||++.++|.+|+.++|.|.+.|+++||.+.+.+... .....+++.+|++|. ++|..+|||.|.|.|.-++.|+||+.
T Consensus 726 EPvylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnES-FgFt~dLrs~t~GqAfpq~vFdHws~- 803 (842)
T KOG0469|consen 726 EPVYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNES-FGFTADLRSNTGGQAFPQMVFDHWSI- 803 (842)
T ss_pred CceEEEEEeCchhhhchhhheeeccccceecccccCCCcceEEEEEeecccc-cccchhhhcccCCccccceeeecccc-
Confidence 999999999999999999999999999999887764 456899999999999 99999999999999999999999996
Q ss_pred cceeeeeeccCCccCcceEEEehhhHHHHHHHHHHHHhccCCC
Q 043429 526 QLIKLDILINGDCVEPLATIVHKDKAYAVGRALTQKLKELIPR 568 (646)
Q Consensus 526 ~~~k~~il~n~~~~~~l~~~~~~~~~~~~~~~~~~~lk~~i~~ 568 (646)
+-|+|.|+-|..-.--.+.+. -+.||+-+|-
T Consensus 804 --------lpgdp~dp~sk~~~iV~~~RK----rkglke~~P~ 834 (842)
T KOG0469|consen 804 --------LPGDPLDPTSKPGQIVLATRK----RKGLKEGVPD 834 (842)
T ss_pred --------CCCCCCCCCccchHHHHHHHH----hcCCCCCCCC
Confidence 789999998865432222222 2457777763
No 24
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-41 Score=352.30 Aligned_cols=320 Identities=29% Similarity=0.461 Sum_probs=274.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccc-------cccccccccccccccceeeeeeEEEEEEEecCCCeEEEEE
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE-------MKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLI 156 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~-------~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~li 156 (646)
+-|+++||.||++|||||.+.|+...|++...+ ......|+|+.|++|||++.++..++.|. ++.+||+
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~----~~~iNLL 86 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYA----DCLVNLL 86 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccC----CeEEecc
Confidence 458999999999999999999998777776433 23567899999999999999999999888 8999999
Q ss_pred eCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcc
Q 043429 157 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCT 236 (646)
Q Consensus 157 DTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~ 236 (646)
|||||+||+..+.|.|.++|.|++|+|+..|+++||++.+..+..+++||+-++||+|....++-+.++++++.+++.+.
T Consensus 87 DTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~ 166 (528)
T COG4108 87 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCA 166 (528)
T ss_pred CCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998875421
Q ss_pred --------------------------------------------------------------------------------
Q 043429 237 -------------------------------------------------------------------------------- 236 (646)
Q Consensus 237 -------------------------------------------------------------------------------- 236 (646)
T Consensus 167 PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl 246 (528)
T COG4108 167 PITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFL 246 (528)
T ss_pred cccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHh
Confidence
Q ss_pred -----cccccccccccchhHHHHHHHHhCCCCCC---------CCCCCceEEEEEEE--eecc-----------------
Q 043429 237 -----NAILCSAKEGIGINEILNAIVKRIPPPSN---------TAGCPFRALIFDRI--IMLM----------------- 283 (646)
Q Consensus 237 -----~i~~vSAk~g~GV~eLl~~I~~~ip~P~~---------~~~~pl~~~vf~~~--~d~~----------------- 283 (646)
|+|+.||.++.||+.+++.++++.|+|.. ..+..|.++|||.. .||.
T Consensus 247 ~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv~SGkfer 326 (528)
T COG4108 247 AGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVCSGKFER 326 (528)
T ss_pred cCCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEeccccccC
Confidence 78999999999999999999999999963 22445999999974 4554
Q ss_pred -ceEEecCCCceEEc------------------cceeeEEEeecccccccccCCeeeecCccccCCCCCcccCCceEEee
Q 043429 284 -KLECYPPIKCKWKN------------------FKQVGYLSASIRSVADARVGDTITHFNRKADNLLPGYEEATPMVFCG 344 (646)
Q Consensus 284 -~~i~~~~~~~~~~v------------------aG~Vg~i~~~i~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~p~v~~~ 344 (646)
+++....+|+...+ ||||. |+-+.+.+++|||++....-. ++|++.-.|-+|..
T Consensus 327 GMkv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDII----Gl~nhG~~~IGDT~t~Ge~l~---f~giP~FaPE~frr 399 (528)
T COG4108 327 GMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDII----GLHNHGTIQIGDTFTEGEKLK---FTGIPNFAPELFRR 399 (528)
T ss_pred CceeeeeecCCceEecchHhhhhhhhhhhhhccCCCeE----eccCCCceeecceeecCceee---ecCCCCCCHHHHHH
Confidence 45555566666555 99963 666889999999999875433 34444446889999
Q ss_pred eeeCCCCCHHHHHHHHHHHhhcCCceEEEeCCCccccceeEeccchhhHHHHHHHHHHHHcCceEEEecceeEE
Q 043429 345 LFPVDADQFPELRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVY 418 (646)
Q Consensus 345 i~p~~~~d~~~L~~aL~kL~~~Dpsl~~~~e~~~~lg~g~r~gflG~lHlei~~erL~~e~~~~v~~t~P~V~Y 418 (646)
++..|+-...+|.++|++|++|-..-.|.+..+. -+-+|-.|.||.||+++||+.|||+++++.+-.+.+
T Consensus 400 vr~kd~~K~Kql~Kgl~QL~eEGavQ~f~p~~~~----d~IlGAVG~LQFeV~~~RL~~EY~ve~~~e~~~~~~ 469 (528)
T COG4108 400 VRLKDPLKQKQLKKGLEQLAEEGAVQVFKPLDGN----DLILGAVGQLQFEVVQARLKNEYNVEAVFEPVNFST 469 (528)
T ss_pred HhcCChHHHHHHHHHHHHHhhcCeeEEEecCCCC----CceEEeeeeeehHHHHHHHHhhhCCeEEEeeccceE
Confidence 9999999999999999999999987777776553 356677999999999999999999999998765443
No 25
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-36 Score=330.95 Aligned_cols=468 Identities=24% Similarity=0.327 Sum_probs=330.9
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCcccccc-ccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeC
Q 043429 80 VPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREM-KEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDT 158 (646)
Q Consensus 80 ~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~-~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDT 158 (646)
.+.+.+|||++++|+|||||||++.|+...|.++.+-. .-.|+|..+.|+.||||.+....+.... ++.+||||+
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~----~~~~nlids 79 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHK----DYLINLIDS 79 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccC----ceEEEEecC
Confidence 45678999999999999999999999998888877654 4578999999999999999998885555 899999999
Q ss_pred CCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCC----CCCchHH-------HHHH
Q 043429 159 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP----GAEPSRV-------AREI 227 (646)
Q Consensus 159 PG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~----~~~~~~~-------~~el 227 (646)
|||.||..++..+.+-||+++++||+.+|+..||...++++...++..++|+||+|.. ...+.+. .+++
T Consensus 80 pghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~v 159 (887)
T KOG0467|consen 80 PGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLRVIEQV 159 (887)
T ss_pred CCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999942 2222222 2222
Q ss_pred HHHhC------------------------CCcccccccccccccchh--H------------------------------
Q 043429 228 EEVIG------------------------LDCTNAILCSAKEGIGIN--E------------------------------ 251 (646)
Q Consensus 228 ~~~l~------------------------~~~~~i~~vSAk~g~GV~--e------------------------------ 251 (646)
...+| -....++++||..|.|+- +
T Consensus 160 n~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k~lwgd~y~~~kt 239 (887)
T KOG0467|consen 160 NGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLKFLWGDRYIDPKT 239 (887)
T ss_pred hhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhhhhhccceeecchh
Confidence 22222 011247788887776431 0
Q ss_pred ----------------------------------------------------------HHHHHH---------------H
Q 043429 252 ----------------------------------------------------------ILNAIV---------------K 258 (646)
Q Consensus 252 ----------------------------------------------------------Ll~~I~---------------~ 258 (646)
+++.+. .
T Consensus 240 k~I~~~~~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~~ll~~im~~wLPls~avll~a~~ 319 (887)
T KOG0467|consen 240 KRICEGKKLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLRNLLDAIMSTWLPLSDAVLLTVVY 319 (887)
T ss_pred hhhhcccCcccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHHHHHHHHHHhhcccccchHHHHHH
Confidence 111111 1
Q ss_pred hCCCCC----------------------------CCCCCCceEEEEEEEeecc----------------------ceEEe
Q 043429 259 RIPPPS----------------------------NTAGCPFRALIFDRIIMLM----------------------KLECY 288 (646)
Q Consensus 259 ~ip~P~----------------------------~~~~~pl~~~vf~~~~d~~----------------------~~i~~ 288 (646)
++|.|- .+.+.|...+|.+...-+- +.++.
T Consensus 320 ~lp~pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~~~ari~sgTlr~g~~v~v 399 (887)
T KOG0467|consen 320 KLPDPIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLLAFARIFSGTLRVGQVVYV 399 (887)
T ss_pred hcCCHHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchhhheeeeeeccCceeeccEeee
Confidence 222220 0122333333322211110 22222
Q ss_pred cCC---------------------CceEEc----cceeeEEEeecccccccccCCeeeecCccccCCCCCcccCCceEEe
Q 043429 289 PPI---------------------KCKWKN----FKQVGYLSASIRSVADARVGDTITHFNRKADNLLPGYEEATPMVFC 343 (646)
Q Consensus 289 ~~~---------------------~~~~~v----aG~Vg~i~~~i~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~p~v~~ 343 (646)
... ....+. +|+|..+. | .+.+-.--|+++.. +...-++.-....|.+..
T Consensus 400 ~~pd~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~-g---~~~vlks~TL~s~~-~~~p~~~~~f~~tp~vrv 474 (887)
T KOG0467|consen 400 LGPDPLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIG-G---AGIVLKSATLCSKV-PCGPNLVVNFQITPIVRV 474 (887)
T ss_pred cCCCCCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEec-c---cceEeccceecccC-CCcceeeeeeeeeeEEEE
Confidence 211 111000 44443332 1 01111122333321 111002222345789999
Q ss_pred eeeeCCCCCHHHHHHHHHHHhhcCCceEEE-eCCCccccceeEeccchhhHHHHHHHHHHHHc-CceEEEecceeEEEEE
Q 043429 344 GLFPVDADQFPELRDALEKLQLNDAALKFE-PETSSAMGFGFRCGFLGLLHMEIVQERLEREY-NLSLITTAPSVVYRVN 421 (646)
Q Consensus 344 ~i~p~~~~d~~~L~~aL~kL~~~Dpsl~~~-~e~~~~lg~g~r~gflG~lHlei~~erL~~e~-~~~v~~t~P~V~Y~e~ 421 (646)
+++|.++++.++|.+.|.-|..-||++++. .++++..+.- .|++|+|-+...|.. | ++++.++.|.|+|+||
T Consensus 475 aiep~~p~em~~L~~glkll~~adp~v~i~v~~~gEhvl~~-----aGevhlerc~kDL~e-fa~i~i~vSeP~vpfrET 548 (887)
T KOG0467|consen 475 AIEPDDPDEMDKLVEGLKLLNQADPFVKIRVEENGEHVLVT-----AGEVHLERCLKDLKE-FAKIEISVSEPLVPFRET 548 (887)
T ss_pred EeecCChHHhHHHHHHHHhhcccchhhHHHHhhccceeeee-----ccHHHHHHHHHHHhh-hhceEEEecCCccchhhh
Confidence 999999999999999999999999999986 6777765555 899999999999998 6 9999999999999999
Q ss_pred eeCCe--------------------EEE---------------------------------E------------------
Q 043429 422 CVNGQ--------------------TVE---------------------------------C------------------ 430 (646)
Q Consensus 422 ~~~g~--------------------~~~---------------------------------~------------------ 430 (646)
+.++. .+. +
T Consensus 549 ~~e~s~l~~~~~I~~~~~~~~~~~~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~~k~~~~e~ls~~~s~ 628 (887)
T KOG0467|consen 549 IIEDSDLLANLSIGQETKCLPRGQLKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPIDESQKGSFEENLSLLISL 628 (887)
T ss_pred ccccchhhhhhhcCcccccccccceeEEeeecccccceeccccccchhccchhccccccccccccccccccccccHHHHH
Confidence 82200 000 0
Q ss_pred ------eC----------------C-----------CCCCC---------------------------------------
Q 043429 431 ------SN----------------P-----------SLLPE--------------------------------------- 438 (646)
Q Consensus 431 ------~~----------------p-----------~~~p~--------------------------------------- 438 (646)
+. | ...+.
T Consensus 629 ~~~~~~ek~~e~~~~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~l~~~ivsgfql~~~sGPlc~Ep~~g~~ 708 (887)
T KOG0467|consen 629 ERLYEFEKPREKLGSFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVARLSESIVSGFQLATSSGPLCNEPMQGIC 708 (887)
T ss_pred HHHhhccccHHHHHHHHhhhhcccccccCCceeeccccchhhhhhhcchHHHHHHHHHhhhHhhhhccCcccccCcccEE
Confidence 00 0 00000
Q ss_pred -------Ccc-----------c---------------ccccccEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeC-CC
Q 043429 439 -------PGQ-----------R---------------RSIEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFT-ES 484 (646)
Q Consensus 439 -------~~~-----------i---------------~~llEP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~-~~ 484 (646)
... + .+|..|||.|+|.+-.|++|+|+..+++|+|++++-+..+ .+
T Consensus 709 ~~~es~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR~gkVLsEem~EgT~ 788 (887)
T KOG0467|consen 709 FVLESGSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKRHGKVLSEEMKEGTG 788 (887)
T ss_pred EEeeccCcccccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhhhhhcchhhhhhhhCCCC
Confidence 000 0 1889999999999999999999999999999999877653 46
Q ss_pred EEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeeccceeeeeeccCCccCcceEEEehhhHHHHHHHHHHHHh
Q 043429 485 RASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKESQLIKLDILINGDCVEPLATIVHKDKAYAVGRALTQKLK 563 (646)
Q Consensus 485 ~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~~~~k~~il~n~~~~~~l~~~~~~~~~~~~~~~~~~~lk 563 (646)
...+++.+|+.|. ++|.+++|..|+|-|+..+.|+||+-.|.-..++-=-.+.+..|.--+.+.+-.++-..-+.|-|
T Consensus 789 ~F~V~aliPVvES-FgFadeiRK~TSG~A~pQLvFShwEvId~DPFWvPtTEEEleefGekADs~N~ArkYMdaVRRRK 866 (887)
T KOG0467|consen 789 FFIVTALIPVVES-FGFADEIRKGTSGAASPQLVFSHWEVIDEDPFWVPTTEEELEEFGEKADSENIARKYMDAVRRRK 866 (887)
T ss_pred cEEEEEEeeeecc-ccHHHHHhhccccccchhhhccccEEecCCCccCCCcHHHHHHhhhcccchhHHHHHHHHHHhhc
Confidence 7899999999999 99999999999999999999999999998888888888888888877766644444444444444
No 26
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.2e-35 Score=312.36 Aligned_cols=460 Identities=23% Similarity=0.348 Sum_probs=317.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccc--cccccccccccccccceeeeeeEEEEEEEe-cCCCeEEEEEeC
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE--MKEQFLDNMDLERERGITIKLQAARMRYVF-ENEPFCLNLIDT 158 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~--~~~~~~d~~~~e~e~giTi~~~~~~~~~~~-~~~~~~l~liDT 158 (646)
+..+|||+++||-.||||+|++.|.+++..-.... ..-.++|....|++||.+|+++..++.... +++.+.+|++||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 46789999999999999999999998776332221 233688999999999999999988876653 457899999999
Q ss_pred CCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCC-------CCCc----hHHHHHH
Q 043429 159 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP-------GAEP----SRVAREI 227 (646)
Q Consensus 159 PG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~-------~~~~----~~~~~el 227 (646)
|||.+|..++.++++.+|++++|||+.+|+..+|.+.+..+.++++|+.+|+||+|+. ..+. ..+.+++
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY~KLrHii~~i 284 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDAYYKLRHIIDEI 284 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999952 1111 1111222
Q ss_pred HHHh---CCC------c--------------------------------------------------ccccccccccccc
Q 043429 228 EEVI---GLD------C--------------------------------------------------TNAILCSAKEGIG 248 (646)
Q Consensus 228 ~~~l---~~~------~--------------------------------------------------~~i~~vSAk~g~G 248 (646)
...+ .-+ + ...|..++..|.+
T Consensus 285 N~~is~~s~~~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~~ktrkF~kk~~~~~~ 364 (971)
T KOG0468|consen 285 NNLISTFSKDDNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHSKTRKFVKKPPDGSG 364 (971)
T ss_pred cchhhhcccccccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhccccccccccccccCCCCCcc
Confidence 1110 000 0 0001122222211
Q ss_pred h-------------------------------------------------------------hHHHHHHHHhCCCCCC--
Q 043429 249 I-------------------------------------------------------------NEILNAIVKRIPPPSN-- 265 (646)
Q Consensus 249 V-------------------------------------------------------------~eLl~~I~~~ip~P~~-- 265 (646)
- .-+.+.+++++|+|..
T Consensus 365 ~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~lvc~~ffg~~sgfvd~~v~hi~sP~e~a 444 (971)
T KOG0468|consen 365 SRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLRLVCKSFFGIESGFVDMPVEHIPSPRENA 444 (971)
T ss_pred cchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHHHHHHHhccchhhhhHhhHhhcCChhhhh
Confidence 1 1134566677777742
Q ss_pred -----------------------CCCCCceEEEEEEEe-------ecc--------------------------------
Q 043429 266 -----------------------TAGCPFRALIFDRII-------MLM-------------------------------- 283 (646)
Q Consensus 266 -----------------------~~~~pl~~~vf~~~~-------d~~-------------------------------- 283 (646)
+++.||-..+-+.+- ..+
T Consensus 445 ~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~~~~q~V~vlgeny~leDEeD~~~~ 524 (971)
T KOG0468|consen 445 ARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTGQDVRVLGENYSLEDEEDMVIC 524 (971)
T ss_pred ccccceeecCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeeeecceeecceeeEeeccccCCCcccceee
Confidence 223444333322110 001
Q ss_pred --ceEEecCCCceEEc----cceeeEEEeecccccccccCCeeeecCcccc-CCCCCcc-cCCceEEeeeeeCCCCCHHH
Q 043429 284 --KLECYPPIKCKWKN----FKQVGYLSASIRSVADARVGDTITHFNRKAD-NLLPGYE-EATPMVFCGLFPVDADQFPE 355 (646)
Q Consensus 284 --~~i~~~~~~~~~~v----aG~Vg~i~~~i~~~~~~~~GDtl~~~~~~~~-~~l~~~~-~~~p~v~~~i~p~~~~d~~~ 355 (646)
++++...+...++| +|....| .|+. ..+----|++..+.... --+++++ .+.|++-.++.|.++++.+|
T Consensus 525 ~v~el~v~~arY~i~V~~~~~G~~VLI-~Gid--q~i~KtaTi~~~~~ked~yiFrpl~~~t~~VvKiaveP~nPsELPK 601 (971)
T KOG0468|consen 525 EVGELWVVRARYRIPVSRAPAGLWVLI-EGVD--QSIVKTATIKSLEYKEDVYIFRPLKFNTEPVVKVAVEPLNPSELPK 601 (971)
T ss_pred eeeeeeeeeeeEEEEecccCCCcEEEE-eccc--hHHhhhhheeccccccceeeccchhcCCcceEEEEeccCChhhhhH
Confidence 12222222222222 4543222 2321 11111223333322211 0123333 35899999999999999999
Q ss_pred HHHHHHHHhhcCCceEEE-eCCCccccceeEeccchhhHHHHHHHHHHHHc-CceEEEecceeEEEEEeeC---------
Q 043429 356 LRDALEKLQLNDAALKFE-PETSSAMGFGFRCGFLGLLHMEIVQERLEREY-NLSLITTAPSVVYRVNCVN--------- 424 (646)
Q Consensus 356 L~~aL~kL~~~Dpsl~~~-~e~~~~lg~g~r~gflG~lHlei~~erL~~e~-~~~v~~t~P~V~Y~e~~~~--------- 424 (646)
|.++|.|....-|.+... .|+++....| -|+|-|+.+...|+.-| .+++.+..|-|.|.||.-+
T Consensus 602 mldgLrKinKsYPl~~tkVEESGEHvilG-----tGElYmDcvlyDLR~~yseieikvaDPvv~F~Et~vetssikcfae 676 (971)
T KOG0468|consen 602 MLDGLRKINKSYPLVITKVEESGEHVILG-----TGELYMDCVLYDLRKSYSEIEIKVADPVVRFCETVVETSSIKCFAE 676 (971)
T ss_pred HHHHHHhhcccCCcEEEehhhcCceEEec-----CchhhHHHHHHHHHHHHhhhceeecCceeEEEEeeecccchhhhcc
Confidence 999999999999999887 6777787788 99999999999999999 8999999999999998744
Q ss_pred ----Ce--------------------EEEEe-C--------------------------CC----------CCCCC----
Q 043429 425 ----GQ--------------------TVECS-N--------------------------PS----------LLPEP---- 439 (646)
Q Consensus 425 ----g~--------------------~~~~~-~--------------------------p~----------~~p~~---- 439 (646)
+. .+.|+ | |. -+|.-
T Consensus 677 tpnkknkItmiaEPlek~l~eDiEng~v~I~wn~krl~effqt~YdWDlLAaRsiWaFgpd~~GpNiL~dDTLp~evdk~ 756 (971)
T KOG0468|consen 677 TPNKKNKITMIAEPLEKGLAEDIENGVVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFGPDYTGPNILLDDTLPTEVDKN 756 (971)
T ss_pred CCCccCceeeeechhhhhhhHHhhcCeEEeccchhhhhhhhhcccchhhhhhcceeccCCCCCCCceeecCcCcchhhHH
Confidence 10 11121 0 00 01100
Q ss_pred ----------------------------------------------------------------cccccccccEEEEEEE
Q 043429 440 ----------------------------------------------------------------GQRRSIEEPFVKIELL 455 (646)
Q Consensus 440 ----------------------------------------------------------------~~i~~llEP~~~~~I~ 455 (646)
.....|+||++.++|.
T Consensus 757 ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~YsafL~AtPrLmEP~Y~VEi~ 836 (971)
T KOG0468|consen 757 LLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPVYLVEIT 836 (971)
T ss_pred HHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCccccccCCCccchHHHHHHHHHHHhhchhhcCceEEEEEe
Confidence 0012899999999999
Q ss_pred cccccHHHHHHHHhhcCceEeeeeeeCCC-EEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeeccceeeeeec
Q 043429 456 TPKEYIGSLMELAQDRRGEFKEMKYFTES-RASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKESQLIKLDILI 534 (646)
Q Consensus 456 ~P~e~~g~v~~~~~~rrG~~~~~~~~~~~-~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~~~~k~~il~ 534 (646)
+|.+.+..|.+++++|||.+..-....+. ...+++.+|+-|. +||-++||-.|+|.|.+...|+||+. +
T Consensus 837 apad~v~~Vy~vl~rRRGhV~~d~p~pGSPly~v~a~iPvieS-fGFETDLR~hTqGqa~C~~vF~HW~~---------V 906 (971)
T KOG0468|consen 837 APADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIES-FGFETDLRVHTQGQAFCLSVFDHWRI---------V 906 (971)
T ss_pred cccchHHHHHHHHHhhcCceeecCCCCCCchhheeeecccccc-cCcccceeeeccchhHHHHhhhhccc---------C
Confidence 99999999999999999998876665433 4689999999999 99999999999999999999999997 8
Q ss_pred cCCccCcceEEEehh--hHHHHHHHHH
Q 043429 535 NGDCVEPLATIVHKD--KAYAVGRALT 559 (646)
Q Consensus 535 n~~~~~~l~~~~~~~--~~~~~~~~~~ 559 (646)
+|+|.|-=.+|-..+ .+...+|.+.
T Consensus 907 PGDpLDKsi~i~~Lep~p~~~LaReFm 933 (971)
T KOG0468|consen 907 PGDPLDKSIAIRPLEPAPIRHLAREFM 933 (971)
T ss_pred CCCccccccccccCCCCCcchhHHHHH
Confidence 898888655544332 2333444443
No 27
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5.4e-30 Score=267.39 Aligned_cols=238 Identities=29% Similarity=0.441 Sum_probs=202.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccc----------------cccccccccccccceeeeeeEEEEEEEecC
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMK----------------EQFLDNMDLERERGITIKLQAARMRYVFEN 148 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~----------------~~~~d~~~~e~e~giTi~~~~~~~~~~~~~ 148 (646)
..|++++||+|||||||+.+|++.+|.++++.+. .+++|....||+||+|++.....++-.
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~--- 83 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD--- 83 (428)
T ss_pred ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC---
Confidence 4699999999999999999999999999875421 588999999999999999988777665
Q ss_pred CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCC-------ccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCCc
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG-------VEAQTLANVYLALENNLE-IIPVLNKIDLPGAEP 220 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g-------~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~~ 220 (646)
.+.++|+|+|||.||..++....+.||++|||||+..+ ...||.++..++...++. +|+++||||+.+.+.
T Consensus 84 -k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 84 -KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred -CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence 78999999999999999999999999999999999998 889999999999999988 999999999988653
Q ss_pred ---hHHHHHHH---HHhCCCc--ccccccccccccchh------------HHHHHHHHhCCCCCCCCCCCceEEEEEEEe
Q 043429 221 ---SRVAREIE---EVIGLDC--TNAILCSAKEGIGIN------------EILNAIVKRIPPPSNTAGCPFRALIFDRII 280 (646)
Q Consensus 221 ---~~~~~el~---~~l~~~~--~~i~~vSAk~g~GV~------------eLl~~I~~~ip~P~~~~~~pl~~~vf~~~~ 280 (646)
+++..++. +.+|+.. .+++++||.+|.|+. .|+++|- .+.+|....+.||+..|-|++.
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd-~~~~p~~~~d~Plr~pI~~v~~ 241 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD-QLEPPERPLDKPLRLPIQDVYS 241 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCcCCcCccCChHHHHHh-ccCCCCCCCCCCeEeEeeeEEE
Confidence 33444443 3456664 468999999999985 4788875 8888999899999999998875
Q ss_pred ecc-----------------ceEEecCCCceEEc--------------cce-eeEEEeecccccccccCCeeeecCcccc
Q 043429 281 MLM-----------------KLECYPPIKCKWKN--------------FKQ-VGYLSASIRSVADARVGDTITHFNRKAD 328 (646)
Q Consensus 281 d~~-----------------~~i~~~~~~~~~~v--------------aG~-Vg~i~~~i~~~~~~~~GDtl~~~~~~~~ 328 (646)
-.. ++|++++++...+| +|| ||+-+.++ ...|++.||.+++.+++..
T Consensus 242 i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~~~~~~~a~~GD~i~~~vrgv-~~~dI~~Gdv~~~~~n~~t 320 (428)
T COG5256 242 ISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMHHEEISQAEPGDNVGFNVRGV-EKNDIRRGDVIGHSDNPPT 320 (428)
T ss_pred ecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeeecccccccCCCCCeEEEEecCC-chhccCCccEeccCCCCcc
Confidence 111 89999999887777 998 88888776 4678999999999887654
No 28
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.97 E-value=1.2e-29 Score=279.19 Aligned_cols=234 Identities=26% Similarity=0.389 Sum_probs=192.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCcccccc---------c-------cccccccccccccceeeeeeEEEEEEEec
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREM---------K-------EQFLDNMDLERERGITIKLQAARMRYVFE 147 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~---------~-------~~~~d~~~~e~e~giTi~~~~~~~~~~~~ 147 (646)
..+||+++||.|+|||||+++|++.++.+.++.+ . .+++|..+.|+++|+|++.....+.+.
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~-- 83 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT-- 83 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC--
Confidence 3479999999999999999999999988776431 0 468999999999999999987766654
Q ss_pred CCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCc-------cHhhHHHHHHHHHcCCC-eEEEEeccCCCC--
Q 043429 148 NEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV-------EAQTLANVYLALENNLE-IIPVLNKIDLPG-- 217 (646)
Q Consensus 148 ~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~-------~~qt~~~~~~~~~~~~p-iIvViNKiDl~~-- 217 (646)
++.++|+|||||.+|..++..+++.+|++|+|||+++|. ..||.++|..+...++| +|+|+||+|+..
T Consensus 84 --~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~ 161 (447)
T PLN00043 84 --KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 161 (447)
T ss_pred --CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchh
Confidence 899999999999999999999999999999999999873 26999999999999996 688999999862
Q ss_pred ---CCchHHHHHHHHHh---CCC--cccccccccccccchhH------------HHHHHHHhCCCCCCCCCCCceEEEEE
Q 043429 218 ---AEPSRVAREIEEVI---GLD--CTNAILCSAKEGIGINE------------ILNAIVKRIPPPSNTAGCPFRALIFD 277 (646)
Q Consensus 218 ---~~~~~~~~el~~~l---~~~--~~~i~~vSAk~g~GV~e------------Ll~~I~~~ip~P~~~~~~pl~~~vf~ 277 (646)
.+++++.+++.+.+ |+. ..+++++||++|.|+.+ |++.| +.+++|....+.||++.|.+
T Consensus 162 ~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l-~~i~~p~~~~~~plr~~I~~ 240 (447)
T PLN00043 162 YSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEAL-DQINEPKRPSDKPLRLPLQD 240 (447)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccccCCcccchHHHHHHH-hhcCCCccccCCCcEEEEEE
Confidence 23455566666554 443 24799999999999853 67776 45778888889999999999
Q ss_pred EEeecc-----------------ceEEecCCCceEEc--------------cce-eeEEEeecccccccccCCeeeec
Q 043429 278 RIIMLM-----------------KLECYPPIKCKWKN--------------FKQ-VGYLSASIRSVADARVGDTITHF 323 (646)
Q Consensus 278 ~~~d~~-----------------~~i~~~~~~~~~~v--------------aG~-Vg~i~~~i~~~~~~~~GDtl~~~ 323 (646)
++..+. +++.+++++...+| ||| ||+.+.++ +..+++.||.|++.
T Consensus 241 v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~~-~~~~i~rG~vl~~~ 317 (447)
T PLN00043 241 VYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLQEALPGDNVGFNVKNV-AVKDLKRGYVASNS 317 (447)
T ss_pred EEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEECCeEeCEecCCCeEEEEECCC-CHhhCCCccEEccC
Confidence 987665 78999998887766 998 77766655 34789999999875
No 29
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.97 E-value=2.5e-29 Score=276.75 Aligned_cols=237 Identities=28% Similarity=0.438 Sum_probs=192.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccc----------------cccccccccccccccceeeeeeEEEEEEEe
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE----------------MKEQFLDNMDLERERGITIKLQAARMRYVF 146 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~----------------~~~~~~d~~~~e~e~giTi~~~~~~~~~~~ 146 (646)
+...||+++||+|||||||+++|++.++.+.... ...+++|..+.|+++|+|++.....+.+.
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~- 82 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD- 82 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC-
Confidence 4457999999999999999999999988876541 12568999999999999999988877665
Q ss_pred cCCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCC--CccHhhHHHHHHHHHcCC-CeEEEEeccCCCCCCc---
Q 043429 147 ENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQ--GVEAQTLANVYLALENNL-EIIPVLNKIDLPGAEP--- 220 (646)
Q Consensus 147 ~~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~--g~~~qt~~~~~~~~~~~~-piIvViNKiDl~~~~~--- 220 (646)
++.++|||||||.+|...+...++.+|++++|+|+++ +...++...+..+...++ |+++|+||+|+.+.+.
T Consensus 83 ---~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~ 159 (425)
T PRK12317 83 ---KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRY 159 (425)
T ss_pred ---CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHH
Confidence 7899999999999999888888999999999999999 888899888888877786 5899999999976432
Q ss_pred hHHHHHHHHH---hCCC--cccccccccccccchhH------------HHHHHHHhCCCCCCCCCCCceEEEEEEEeecc
Q 043429 221 SRVAREIEEV---IGLD--CTNAILCSAKEGIGINE------------ILNAIVKRIPPPSNTAGCPFRALIFDRIIMLM 283 (646)
Q Consensus 221 ~~~~~el~~~---l~~~--~~~i~~vSAk~g~GV~e------------Ll~~I~~~ip~P~~~~~~pl~~~vf~~~~d~~ 283 (646)
....+++.+. +++. ..+++++||++|.|+++ |+++| +.+|+|..+.+.||++.|.+++..+.
T Consensus 160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l-~~~~~~~~~~~~p~r~~i~~~~~~~g 238 (425)
T PRK12317 160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEAL-DNLKPPEKPTDKPLRIPIQDVYSISG 238 (425)
T ss_pred HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHH-hcCCCCccccCCCcEEEEEEEEeeCC
Confidence 2333444443 3443 24699999999999986 67775 56788877888999999999988765
Q ss_pred -----------------ceEEecCCCceEEc--------------cce-eeEEEeecccccccccCCeeeecCc
Q 043429 284 -----------------KLECYPPIKCKWKN--------------FKQ-VGYLSASIRSVADARVGDTITHFNR 325 (646)
Q Consensus 284 -----------------~~i~~~~~~~~~~v--------------aG~-Vg~i~~~i~~~~~~~~GDtl~~~~~ 325 (646)
+++.+++++....| ||| |++.+.++ +..+++.||++++.++
T Consensus 239 ~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~~-~~~~i~rG~vl~~~~~ 311 (425)
T PRK12317 239 VGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMHHEELPQAEPGDNIGFNVRGV-GKKDIKRGDVCGHPDN 311 (425)
T ss_pred CeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEECCcccCEECCCCeEEEEECCC-CHHHccCccEecCCCC
Confidence 78889998887766 898 66666555 3468899999987643
No 30
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.96 E-value=3.7e-29 Score=275.39 Aligned_cols=234 Identities=26% Similarity=0.406 Sum_probs=193.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCcccccc------------c----cccccccccccccceeeeeeEEEEEEEecC
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREM------------K----EQFLDNMDLERERGITIKLQAARMRYVFEN 148 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~------------~----~~~~d~~~~e~e~giTi~~~~~~~~~~~~~ 148 (646)
..||+++||.|+|||||+++|++.++.+.+++. + .+++|..+.|+++|+|++.....+.+.
T Consensus 7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~--- 83 (446)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP--- 83 (446)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC---
Confidence 469999999999999999999999888775431 1 257999999999999999987776665
Q ss_pred CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCc-------cHhhHHHHHHHHHcCCC-eEEEEeccCCCC---
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV-------EAQTLANVYLALENNLE-IIPVLNKIDLPG--- 217 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~-------~~qt~~~~~~~~~~~~p-iIvViNKiDl~~--- 217 (646)
++.++|+|||||.+|..++...+..+|++++|||++.|+ ..||.++|..+...++| +|+|+||+|.+.
T Consensus 84 -~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~ 162 (446)
T PTZ00141 84 -KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNY 162 (446)
T ss_pred -CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchh
Confidence 899999999999999999999999999999999999997 47999999999999998 679999999543
Q ss_pred --CCchHHHHHHHHHh---CCC--cccccccccccccchhH------------HHHHHHHhCCCCCCCCCCCceEEEEEE
Q 043429 218 --AEPSRVAREIEEVI---GLD--CTNAILCSAKEGIGINE------------ILNAIVKRIPPPSNTAGCPFRALIFDR 278 (646)
Q Consensus 218 --~~~~~~~~el~~~l---~~~--~~~i~~vSAk~g~GV~e------------Ll~~I~~~ip~P~~~~~~pl~~~vf~~ 278 (646)
++++++.+++.+.+ ++. ..+++++||.+|.|+.+ |++.| +.+++|..+.+.||++.|.++
T Consensus 163 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l-~~~~~~~~~~~~p~r~~I~~v 241 (446)
T PTZ00141 163 SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEAL-DTLEPPKRPVDKPLRLPLQDV 241 (446)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHH-hCCCCCCcCCCCCeEEEEEEE
Confidence 33556666776655 343 35789999999999964 88886 456777777889999999998
Q ss_pred Eeecc-----------------ceEEecCCCceEEc--------------cce-eeEEEeecccccccccCCeeeecC
Q 043429 279 IIMLM-----------------KLECYPPIKCKWKN--------------FKQ-VGYLSASIRSVADARVGDTITHFN 324 (646)
Q Consensus 279 ~~d~~-----------------~~i~~~~~~~~~~v--------------aG~-Vg~i~~~i~~~~~~~~GDtl~~~~ 324 (646)
+..++ +++.+++++....| ||| |++.+.++ +..+++.||+|++..
T Consensus 242 ~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~L~~i-~~~~v~rG~vl~~~~ 318 (446)
T PTZ00141 242 YKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMHHEQLAEAVPGDNVGFNVKNV-SVKDIKRGYVASDSK 318 (446)
T ss_pred EecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEecCcccCEECCCCEEEEEECCC-CHHHcCCceEEecCC
Confidence 87665 78889998876666 998 66655554 346799999998753
No 31
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.96 E-value=1.1e-28 Score=271.62 Aligned_cols=237 Identities=26% Similarity=0.427 Sum_probs=188.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCcccccc----------------ccccccccccccccceeeeeeEEEEEEEe
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREM----------------KEQFLDNMDLERERGITIKLQAARMRYVF 146 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~----------------~~~~~d~~~~e~e~giTi~~~~~~~~~~~ 146 (646)
+..+||+++||+|||||||+++|+..++.+....+ -.+++|..+.|+++|+|++.....+.+.
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~- 83 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD- 83 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC-
Confidence 34689999999999999999999998888764321 1367999999999999999988776655
Q ss_pred cCCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCC---ccHhhHHHHHHHHHcCC-CeEEEEeccCCCCCCch-
Q 043429 147 ENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG---VEAQTLANVYLALENNL-EIIPVLNKIDLPGAEPS- 221 (646)
Q Consensus 147 ~~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g---~~~qt~~~~~~~~~~~~-piIvViNKiDl~~~~~~- 221 (646)
++.++|||||||.+|...+..+++.+|++++|||++++ ...++..++..+...+. |+++|+||+|+.+.+.+
T Consensus 84 ---~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 84 ---KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred ---CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHH
Confidence 78999999999999998888889999999999999999 66677776666655564 58899999999754332
Q ss_pred --HHHHHHHHH---hCCC--cccccccccccccchhH------------HHHHHHHhCCCCCCCCCCCceEEEEEEEeec
Q 043429 222 --RVAREIEEV---IGLD--CTNAILCSAKEGIGINE------------ILNAIVKRIPPPSNTAGCPFRALIFDRIIML 282 (646)
Q Consensus 222 --~~~~el~~~---l~~~--~~~i~~vSAk~g~GV~e------------Ll~~I~~~ip~P~~~~~~pl~~~vf~~~~d~ 282 (646)
...+++.+. +++. ..+++++||++|.|+++ |+++| +.+++|..+.+.||++.|.++++.+
T Consensus 161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l-~~~~~~~~~~~~p~r~~i~~v~~~~ 239 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEAL-DALEPPEKPTDKPLRIPIQDVYSIT 239 (426)
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHH-hcCCCCCCccCCCcEEEEEEEEecC
Confidence 233444433 3442 25799999999999985 88887 4577777778899999999998877
Q ss_pred c-----------------ceEEecCCCceEEc--------------cce-eeEEEeecccccccccCCeeeecCc
Q 043429 283 M-----------------KLECYPPIKCKWKN--------------FKQ-VGYLSASIRSVADARVGDTITHFNR 325 (646)
Q Consensus 283 ~-----------------~~i~~~~~~~~~~v--------------aG~-Vg~i~~~i~~~~~~~~GDtl~~~~~ 325 (646)
+ +++.+++.+....| ||| |++.+.++ +..+++.||+|++.++
T Consensus 240 g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~i-~~~~i~rG~vl~~~~~ 313 (426)
T TIGR00483 240 GVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHHEQIEQAEPGDNIGFNVRGV-SKKDIRRGDVCGHPDN 313 (426)
T ss_pred CCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEECCcccCEEcCCCEEEEEECCC-ChhhcccceEEecCCC
Confidence 6 78889998877666 998 66655554 3478999999987543
No 32
>PRK12736 elongation factor Tu; Reviewed
Probab=99.96 E-value=1.4e-28 Score=267.82 Aligned_cols=237 Identities=26% Similarity=0.330 Sum_probs=187.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCcccc-ccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKR-EMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH 161 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~-~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~ 161 (646)
+..+||+++||+|||||||+++|+.......+. ....+.+|..+.|+++|+|++.....+.+ ++..++|||||||
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~----~~~~i~~iDtPGh 85 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET----EKRHYAHVDCPGH 85 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC----CCcEEEEEECCCH
Confidence 345899999999999999999998643321111 11234689999999999999886554333 3678899999999
Q ss_pred ccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCC-c-hHHHHHHHHH---hCCC-
Q 043429 162 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPGAE-P-SRVAREIEEV---IGLD- 234 (646)
Q Consensus 162 ~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~-~-~~~~~el~~~---l~~~- 234 (646)
.+|...+.+.+..+|++++|+|+++|...+|.+++..+...++| +|+|+||+|+.+.. . +...+++.+. +++.
T Consensus 86 ~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 165 (394)
T PRK12736 86 ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPG 165 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999 67899999986432 1 2233345444 3432
Q ss_pred -ccccccccccccc--------chhHHHHHHHHhCCCCCCCCCCCceEEEEEEEeecc-----------------ceEEe
Q 043429 235 -CTNAILCSAKEGI--------GINEILNAIVKRIPPPSNTAGCPFRALIFDRIIMLM-----------------KLECY 288 (646)
Q Consensus 235 -~~~i~~vSAk~g~--------GV~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~~d~~-----------------~~i~~ 288 (646)
..+++++||++|. ++++|++.+.+.+|+|..+.+.||++.|.+++++++ +++++
T Consensus 166 ~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i 245 (394)
T PRK12736 166 DDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDEVEI 245 (394)
T ss_pred CCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecCCEEEE
Confidence 3479999999983 689999999999999988889999999999999886 78888
Q ss_pred cCC--CceEEc--------------cce-eeEEEeecccccccccCCeeeecC
Q 043429 289 PPI--KCKWKN--------------FKQ-VGYLSASIRSVADARVGDTITHFN 324 (646)
Q Consensus 289 ~~~--~~~~~v--------------aG~-Vg~i~~~i~~~~~~~~GDtl~~~~ 324 (646)
++. +....| ||| +++.+.++ +..+++.||+|++.+
T Consensus 246 ~p~~~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i-~~~~i~~G~vl~~~~ 297 (394)
T PRK12736 246 VGIKETQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGV-DRDEVERGQVLAKPG 297 (394)
T ss_pred ecCCCCeEEEEEEEEECCEEccEECCCCEEEEEECCC-cHHhCCcceEEecCC
Confidence 876 334444 999 66666665 346899999998754
No 33
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.96 E-value=4.1e-28 Score=279.69 Aligned_cols=390 Identities=23% Similarity=0.277 Sum_probs=258.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
.+.++|+|+||+|||||||+++|.... + .....+|+|.......+.|. ++.++|||||||.
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~--v-------------~~~e~~GIT~~iga~~v~~~----~~~ItfiDTPGhe 348 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTN--V-------------AAGEAGGITQHIGAYQVETN----GGKITFLDTPGHE 348 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC--c-------------cccccCceeeeccEEEEEEC----CEEEEEEECCCCc
Confidence 356899999999999999999996511 1 11235788888877777665 6889999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCC------Ccc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL------DCT 236 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~------~~~ 236 (646)
+|..++.++++.+|++|||||+++|...+|...|..+...++|+|+|+||+|+++++.+.+..++.+. ++ ...
T Consensus 349 ~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~-~~~~e~~g~~v 427 (787)
T PRK05306 349 AFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEY-GLVPEEWGGDT 427 (787)
T ss_pred cchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHh-cccHHHhCCCc
Confidence 99999999999999999999999999999999999998899999999999999887776666665432 21 124
Q ss_pred cccccccccccchhHHHHHHHHhC--CCCCCCCCCCceEEEEEEEeecc--------------------------ceEEe
Q 043429 237 NAILCSAKEGIGINEILNAIVKRI--PPPSNTAGCPFRALIFDRIIMLM--------------------------KLECY 288 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~i--p~P~~~~~~pl~~~vf~~~~d~~--------------------------~~i~~ 288 (646)
+++++||++|.|+++|+++|.... ..+..+++.|+++.||+++.|++ ++|+.
T Consensus 428 p~vpvSAktG~GI~eLle~I~~~~e~~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv~g~~~gkVr~ 507 (787)
T PRK05306 428 IFVPVSAKTGEGIDELLEAILLQAEVLELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGDIVVAGTTYGRVRA 507 (787)
T ss_pred eEEEEeCCCCCCchHHHHhhhhhhhhhhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecCCEEEECCcEEEEEE
Confidence 699999999999999999997532 23456678899999999999987 23333
Q ss_pred cCCCceEEc----cceeeEEEeeccccccc-ccCCeeeecCccc----------------------cCCCCCcc--c--C
Q 043429 289 PPIKCKWKN----FKQVGYLSASIRSVADA-RVGDTITHFNRKA----------------------DNLLPGYE--E--A 337 (646)
Q Consensus 289 ~~~~~~~~v----aG~Vg~i~~~i~~~~~~-~~GDtl~~~~~~~----------------------~~~l~~~~--~--~ 337 (646)
|......++ +||++.++ | +.++ .+||||+...+.. ...|..+. . .
T Consensus 508 m~~~~~~~v~~A~pGd~V~I~-g---l~~~p~~Gd~l~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~ 583 (787)
T PRK05306 508 MVDDNGKRVKEAGPSTPVEIL-G---LSGVPQAGDEFVVVEDEKKAREIAEYRQEKAREKKLARQQRVSLENLFEQMKEG 583 (787)
T ss_pred EECCCCCCCCEEcCCCeEEEe-C---CCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHHhhhccccCHHHhhhhhhcC
Confidence 332211122 89987765 4 4566 8999998532221 00111111 0 0
Q ss_pred -CceEEeeeeeCCCCCHHHHHHHHHHHhhcCCceEEEe--------------CCCccccceeEeccchhhHHHHHHHHHH
Q 043429 338 -TPMVFCGLFPVDADQFPELRDALEKLQLNDAALKFEP--------------ETSSAMGFGFRCGFLGLLHMEIVQERLE 402 (646)
Q Consensus 338 -~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~~~~--------------e~~~~lg~g~r~gflG~lHlei~~erL~ 402 (646)
.+.+...|.+...+..+.|.++|.+|..+|+.+.+-. ..+.++.-||-+... -+ + ..+-
T Consensus 584 ~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i~~~~vG~it~~Dv~la~~~~a~ii~Fnv~~~----~~-~-~~~a 657 (787)
T PRK05306 584 EVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNIIHSGVGAITESDVTLAAASNAIIIGFNVRPD----AK-A-RKLA 657 (787)
T ss_pred CceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEEEeeccCCCCHHHHHHHHhcCCEEEEEcCCCC----HH-H-HHHH
Confidence 1257888999999999999999999999999998731 123333334333322 12 2 3334
Q ss_pred HHcCceEEEecceeEEEEEeeCCeEEEEeCCCCCCCCcccccccccEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeC
Q 043429 403 REYNLSLITTAPSVVYRVNCVNGQTVECSNPSLLPEPGQRRSIEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFT 482 (646)
Q Consensus 403 ~e~~~~v~~t~P~V~Y~e~~~~g~~~~~~~p~~~p~~~~i~~llEP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~ 482 (646)
++-|+++... .|+|+-.- += -..+..+|+|.+.-+++-+.+.. .|.. .++-|.+.+....+
T Consensus 658 ~~~~v~i~~~--~iIY~l~d-~~-------------~~~~~~~l~~~~~e~~~g~a~v~-~vF~--~~k~~~iaGc~V~~ 718 (787)
T PRK05306 658 EQEGVDIRYY--SIIYDLID-DV-------------KAAMSGMLEPEYEEEIIGQAEVR-EVFK--VSKVGTIAGCMVTE 718 (787)
T ss_pred HHcCCEEEEe--ChHHHHHH-HH-------------HHHHhhccCchhheeeeeeEEEE-EEEe--cCCCCeEEEEEEee
Confidence 4457766544 45564210 00 00112234444333332222111 0000 01234444443322
Q ss_pred C-----CEE------EEEEEechhhhHhhHHHHhcccCcceEEEEEEEccee
Q 043429 483 E-----SRA------SLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYK 523 (646)
Q Consensus 483 ~-----~~~------~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~ 523 (646)
+ ..+ .+.|+-.+..| ..|-++.+.+..|+ .+-..+.+|.
T Consensus 719 G~i~~~~~~rv~R~~~~i~~g~i~sl-k~~k~~v~ev~~g~-ecgi~~~~~~ 768 (787)
T PRK05306 719 GKIKRNAKVRVLRDGVVIYEGELESL-KRFKDDVKEVRAGY-ECGIGLENYN 768 (787)
T ss_pred CEEecCCeEEEEeCCEEEEEeEEehh-cccCcCccEeCCCC-EEEEEeeccc
Confidence 1 111 22366678887 89999999999999 5666666663
No 34
>PLN03126 Elongation factor Tu; Provisional
Probab=99.96 E-value=3.1e-28 Score=268.97 Aligned_cols=237 Identities=26% Similarity=0.305 Sum_probs=191.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCcccccc-ccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREM-KEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH 161 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~-~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~ 161 (646)
+..+||+++||+|||||||+++|++..+.+..+.. +..++|..+.|+++|+|++.....+.+. +..++|||||||
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~----~~~i~liDtPGh 154 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE----NRHYAHVDCPGH 154 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC----CcEEEEEECCCH
Confidence 45689999999999999999999998777654432 3457899999999999998877666554 678999999999
Q ss_pred ccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCC--chHHHHHHHHHh---CCC-
Q 043429 162 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPGAE--PSRVAREIEEVI---GLD- 234 (646)
Q Consensus 162 ~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~--~~~~~~el~~~l---~~~- 234 (646)
.+|..++...+..+|++++|+|+.+|...||.++|..+...++| +++++||+|+.+.. .+...+++.+.+ +++
T Consensus 155 ~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~ 234 (478)
T PLN03126 155 ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPG 234 (478)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999 78899999986522 223333555443 443
Q ss_pred -cccccccccccccc------------------hhHHHHHHHHhCCCCCCCCCCCceEEEEEEEeecc------------
Q 043429 235 -CTNAILCSAKEGIG------------------INEILNAIVKRIPPPSNTAGCPFRALIFDRIIMLM------------ 283 (646)
Q Consensus 235 -~~~i~~vSAk~g~G------------------V~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~~d~~------------ 283 (646)
..+++++||.+|.+ +.+|++.|.+.+|.|..+.+.||++.|.++++.++
T Consensus 235 ~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG 314 (478)
T PLN03126 235 DDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERG 314 (478)
T ss_pred CcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccceeeEEEEEEEeCCceEEEEEEEEcC
Confidence 45789999988842 45788888887777877888999999999998876
Q ss_pred -----ceEEecCCCc--eEEc--------------cce-eeEEEeecccccccccCCeeeecC
Q 043429 284 -----KLECYPPIKC--KWKN--------------FKQ-VGYLSASIRSVADARVGDTITHFN 324 (646)
Q Consensus 284 -----~~i~~~~~~~--~~~v--------------aG~-Vg~i~~~i~~~~~~~~GDtl~~~~ 324 (646)
+++++++.+. ...| +|| |++.+.++ +..+++.||+|++.+
T Consensus 315 ~i~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i-~~~di~rG~VL~~~~ 376 (478)
T PLN03126 315 TVKVGETVDIVGLRETRSTTVTGVEMFQKILDEALAGDNVGLLLRGI-QKADIQRGMVLAKPG 376 (478)
T ss_pred eEecCCEEEEecCCCceEEEEEEEEECCeECCEEeCCceeeeeccCC-cHHHcCCccEEecCC
Confidence 7888888753 3333 998 77766665 346899999998764
No 35
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.96 E-value=2.4e-28 Score=236.37 Aligned_cols=178 Identities=76% Similarity=1.154 Sum_probs=156.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEe-cCCCeEEEEEeCCCCccc
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVF-ENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~-~~~~~~l~liDTPG~~df 164 (646)
|||+++|++|||||||+++|++..+.+.+.....++++....++++|+|.......+.|.. ++..+.++||||||+.+|
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 6999999999999999999999887776655667788888899999999988877776643 456789999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcccccccccc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAK 244 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~~vSAk 244 (646)
...+.++++.+|++|+|+|++++.+.++...|......++|+++|+||+|+.+.......+++.+.++.+..+++++||+
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAK 160 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeecc
Confidence 99999999999999999999999999998888888788999999999999976655555677777788765568999999
Q ss_pred cccchhHHHHHHHHhCCCC
Q 043429 245 EGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 245 ~g~GV~eLl~~I~~~ip~P 263 (646)
+|.|+++++++|.+.+|+|
T Consensus 161 ~g~gi~~l~~~l~~~~~~~ 179 (179)
T cd01890 161 TGLGVEDLLEAIVERIPPP 179 (179)
T ss_pred CCCCHHHHHHHHHhhCCCC
Confidence 9999999999999999887
No 36
>CHL00071 tufA elongation factor Tu
Probab=99.96 E-value=4e-28 Score=265.42 Aligned_cols=237 Identities=26% Similarity=0.302 Sum_probs=189.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccc-cccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE-MKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH 161 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~-~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~ 161 (646)
+..+||+++||+|||||||+++|++..+.+.... .....+|..+.|+++|+|+++....+.+ ++..++|+|||||
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~----~~~~~~~iDtPGh 85 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET----ENRHYAHVDCPGH 85 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc----CCeEEEEEECCCh
Confidence 4468999999999999999999999877664332 2335789999999999999987665544 3678999999999
Q ss_pred ccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCC--chHHHHHHHHHh---CCCc
Q 043429 162 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPGAE--PSRVAREIEEVI---GLDC 235 (646)
Q Consensus 162 ~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~--~~~~~~el~~~l---~~~~ 235 (646)
.+|...+.+++..+|++++|+|+..|.+.|+.+.+..+...++| +|+|+||+|+.+.. .+...+++.+.+ +++.
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~ 165 (409)
T CHL00071 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPG 165 (409)
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999 77899999997532 122333444443 3332
Q ss_pred --cccccccccccc------------------chhHHHHHHHHhCCCCCCCCCCCceEEEEEEEeecc------------
Q 043429 236 --TNAILCSAKEGI------------------GINEILNAIVKRIPPPSNTAGCPFRALIFDRIIMLM------------ 283 (646)
Q Consensus 236 --~~i~~vSAk~g~------------------GV~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~~d~~------------ 283 (646)
.+++++||.+|. ++..|+++|.+.+|+|..+.+.||++.|.+++++++
T Consensus 166 ~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG 245 (409)
T CHL00071 166 DDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITGRGTVATGRIERG 245 (409)
T ss_pred CcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEEEEEEEEEEeCCCeEEEEEEEecC
Confidence 579999999986 357899999988888888889999999999999886
Q ss_pred -----ceEEecCC--CceEEc--------------cce-eeEEEeecccccccccCCeeeecC
Q 043429 284 -----KLECYPPI--KCKWKN--------------FKQ-VGYLSASIRSVADARVGDTITHFN 324 (646)
Q Consensus 284 -----~~i~~~~~--~~~~~v--------------aG~-Vg~i~~~i~~~~~~~~GDtl~~~~ 324 (646)
+++.+++. +....| ||| |++.+.++. ..+++.||+|++.+
T Consensus 246 ~l~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~i~-~~~i~~G~vl~~~~ 307 (409)
T CHL00071 246 TVKVGDTVEIVGLRETKTTTVTGLEMFQKTLDEGLAGDNVGILLRGIQ-KEDIERGMVLAKPG 307 (409)
T ss_pred EEeeCCEEEEeeCCCCcEEEEEEEEEcCcCCCEECCCceeEEEEcCCC-HHHcCCeEEEecCC
Confidence 67777653 333444 998 555555553 36899999998764
No 37
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.96 E-value=3e-28 Score=266.06 Aligned_cols=232 Identities=23% Similarity=0.289 Sum_probs=185.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccc----------cc--------cccccccccccccceeeeeeEEEEEEEecC
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKRE----------MK--------EQFLDNMDLERERGITIKLQAARMRYVFEN 148 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~----------~~--------~~~~d~~~~e~e~giTi~~~~~~~~~~~~~ 148 (646)
||+++||+|+|||||+++|++.++.+.++. .+ .+++|..+.|++||+|++.....+.+.
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~--- 78 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD--- 78 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC---
Confidence 799999999999999999999999887632 11 468999999999999999988887775
Q ss_pred CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCCch---HHH
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPGAEPS---RVA 224 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~~~---~~~ 224 (646)
+..++|||||||.+|...+..++..+|++++|+|+..|...||.++|..+...++| +++|+||+|+...+.+ +..
T Consensus 79 -~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~ 157 (406)
T TIGR02034 79 -KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIK 157 (406)
T ss_pred -CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999988887776 8889999999764422 223
Q ss_pred HHHH---HHhCCCcccccccccccccchhH------------HHHHHHHhCCCCCCCCCCCceEEEEEEEe-----ecc-
Q 043429 225 REIE---EVIGLDCTNAILCSAKEGIGINE------------ILNAIVKRIPPPSNTAGCPFRALIFDRII-----MLM- 283 (646)
Q Consensus 225 ~el~---~~l~~~~~~i~~vSAk~g~GV~e------------Ll~~I~~~ip~P~~~~~~pl~~~vf~~~~-----d~~- 283 (646)
+++. +.+++...+++++||++|.|+++ |++.| +.+++|....+.||++.|.+++. ..+
T Consensus 158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L-~~~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~ 236 (406)
T TIGR02034 158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEIL-ETVEVERDAQDLPLRFPVQYVNRPNLDFRGYA 236 (406)
T ss_pred HHHHHHHHHcCCCCccEEEeecccCCCCcccccCCCccchhHHHHHH-HhcCCCCCcCCCCcccceEEEeecCCCcEEEE
Confidence 3333 33355555799999999999985 55555 45677777778999988766531 111
Q ss_pred -----------ceEEecCCCceEEc--------------cceeeEEEeecccccccccCCeeeecCc
Q 043429 284 -----------KLECYPPIKCKWKN--------------FKQVGYLSASIRSVADARVGDTITHFNR 325 (646)
Q Consensus 284 -----------~~i~~~~~~~~~~v--------------aG~Vg~i~~~i~~~~~~~~GDtl~~~~~ 325 (646)
++|.+++++....| +||...+ ++++..+++.||+|++.++
T Consensus 237 G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~~G~~v~l--~l~~~~~i~rG~vl~~~~~ 301 (406)
T TIGR02034 237 GTIASGSVHVGDEVVVLPSGRSSRVARIVTFDGDLEQARAGQAVTL--TLDDEIDISRGDLLAAADS 301 (406)
T ss_pred EEEecceeecCCEEEEeCCCcEEEEEEEEECCcccCEeCCCCEEEE--EECCccccCCccEEEcCCC
Confidence 88999998887766 8884333 2445677899999988654
No 38
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.96 E-value=5.7e-28 Score=263.26 Aligned_cols=236 Identities=27% Similarity=0.325 Sum_probs=183.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccc-cccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQK-REMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH 161 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~-~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~ 161 (646)
+..+||+++||+|||||||+++|++......+ +....+.+|..+.|+++|+|++.....+.+ ++..++|||||||
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~----~~~~~~liDtpGh 85 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET----ENRHYAHVDCPGH 85 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC----CCEEEEEEECCch
Confidence 34689999999999999999999864221111 111235789999999999999986554433 3678999999999
Q ss_pred ccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeE-EEEeccCCCCCC--chHHHHHHHHHh---CCCc
Q 043429 162 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEII-PVLNKIDLPGAE--PSRVAREIEEVI---GLDC 235 (646)
Q Consensus 162 ~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piI-vViNKiDl~~~~--~~~~~~el~~~l---~~~~ 235 (646)
++|...+.+.+..+|++++|+|+.+|...+|.+.+..+...++|.+ +|+||+|+.+.. .+.+.+++.+.+ ++..
T Consensus 86 ~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (394)
T TIGR00485 86 ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPG 165 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999965 689999986532 122233444443 4333
Q ss_pred --cccccccccccc--------chhHHHHHHHHhCCCCCCCCCCCceEEEEEEEeecc-----------------ceEEe
Q 043429 236 --TNAILCSAKEGI--------GINEILNAIVKRIPPPSNTAGCPFRALIFDRIIMLM-----------------KLECY 288 (646)
Q Consensus 236 --~~i~~vSAk~g~--------GV~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~~d~~-----------------~~i~~ 288 (646)
.+++++||++|. ++.+++++|.+.+|+|..+.+.||++.|.+++++++ +++.+
T Consensus 166 ~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i 245 (394)
T TIGR00485 166 DDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEVEI 245 (394)
T ss_pred cCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCEEEE
Confidence 579999999885 466888888888888888888999999999999887 77887
Q ss_pred cCC--CceEEc--------------cce-eeEEEeecccccccccCCeeeec
Q 043429 289 PPI--KCKWKN--------------FKQ-VGYLSASIRSVADARVGDTITHF 323 (646)
Q Consensus 289 ~~~--~~~~~v--------------aG~-Vg~i~~~i~~~~~~~~GDtl~~~ 323 (646)
++. ++...| ||| +++.+.++. ..+++.||+|++.
T Consensus 246 ~p~~~~~~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~-~~~i~rG~vl~~~ 296 (394)
T TIGR00485 246 VGLKDTRKTTVTGVEMFRKELDEGRAGDNVGLLLRGIK-REEIERGMVLAKP 296 (394)
T ss_pred ecCCCCcEEEEEEEEECCeEEEEECCCCEEEEEeCCcc-HHHCCccEEEecC
Confidence 764 344444 999 665555653 3689999999875
No 39
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.96 E-value=9.7e-28 Score=266.08 Aligned_cols=236 Identities=22% Similarity=0.267 Sum_probs=186.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccc----------cc--------cccccccccccccceeeeeeEEEEEE
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE----------MK--------EQFLDNMDLERERGITIKLQAARMRY 144 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~----------~~--------~~~~d~~~~e~e~giTi~~~~~~~~~ 144 (646)
+...||+|+||+|+|||||+++|++.++.+.++. .+ .+++|..+.|++||+|++.....+.+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 4457999999999999999999999999887532 11 35899999999999999988776665
Q ss_pred EecCCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCC-CeEEEEeccCCCCCCc---
Q 043429 145 VFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNL-EIIPVLNKIDLPGAEP--- 220 (646)
Q Consensus 145 ~~~~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~-piIvViNKiDl~~~~~--- 220 (646)
. +..++|||||||.+|...+...+..+|++++|+|+..|...||.+.+..+...++ |+++|+||+|+.+.+.
T Consensus 105 ~----~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~ 180 (474)
T PRK05124 105 E----KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVF 180 (474)
T ss_pred C----CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHH
Confidence 4 7889999999999999999999999999999999999999999999888877775 5889999999975442
Q ss_pred hHHHHHHHHH---hC-CCcccccccccccccchhH------------HHHHHHHhCCCCCCCCCCCceEEEEEEEee---
Q 043429 221 SRVAREIEEV---IG-LDCTNAILCSAKEGIGINE------------ILNAIVKRIPPPSNTAGCPFRALIFDRIIM--- 281 (646)
Q Consensus 221 ~~~~~el~~~---l~-~~~~~i~~vSAk~g~GV~e------------Ll~~I~~~ip~P~~~~~~pl~~~vf~~~~d--- 281 (646)
.+..+++... ++ ....+++++||++|.|+++ |++ +++.+++|....+.||++.|.+++..
T Consensus 181 ~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~-~L~~i~~~~~~~~~p~r~~I~~v~~~~~~ 259 (474)
T PRK05124 181 ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLE-VLETVDIQRVVDAQPFRFPVQYVNRPNLD 259 (474)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccccccccccchhhHHH-HHhhcCCCCCCCCCCceeeEEEEEecCCc
Confidence 2333344332 23 3346799999999999976 444 45677888777889999988765421
Q ss_pred --cc------------ceEEecCCCceEEc--------------cceeeEEEeecccccccccCCeeeecCc
Q 043429 282 --LM------------KLECYPPIKCKWKN--------------FKQVGYLSASIRSVADARVGDTITHFNR 325 (646)
Q Consensus 282 --~~------------~~i~~~~~~~~~~v--------------aG~Vg~i~~~i~~~~~~~~GDtl~~~~~ 325 (646)
.+ ++|.+++++....| +||...+ ++++..+++.||+|++.+.
T Consensus 260 ~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aG~~V~l--~L~~~~~i~rG~VL~~~~~ 329 (474)
T PRK05124 260 FRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTFDGDLEEAFAGEAITL--VLEDEIDISRGDLLVAADE 329 (474)
T ss_pred ccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEcCccccCcCCCCEEEE--EeCCccccCCccEEECCCC
Confidence 12 88999999887766 8885433 3445678999999998643
No 40
>PRK12735 elongation factor Tu; Reviewed
Probab=99.96 E-value=1.2e-27 Score=260.59 Aligned_cols=237 Identities=28% Similarity=0.317 Sum_probs=186.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccc-cccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE-MKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH 161 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~-~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~ 161 (646)
+...||+++||+|||||||+++|++......+.. ...+.+|..+.|+++|+|++.....+.+ ++..++|||||||
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~----~~~~i~~iDtPGh 85 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET----ANRHYAHVDCPGH 85 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC----CCcEEEEEECCCH
Confidence 3457999999999999999999997433221111 1234789999999999999986555433 3678999999999
Q ss_pred ccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeE-EEEeccCCCCCC--chHHHHHHHHH---hCCC-
Q 043429 162 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEII-PVLNKIDLPGAE--PSRVAREIEEV---IGLD- 234 (646)
Q Consensus 162 ~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piI-vViNKiDl~~~~--~~~~~~el~~~---l~~~- 234 (646)
.+|...+.+.+..+|++++|+|+.++...|+.+.+..+...++|.+ +|+||+|+.+.. .+...+++.+. +++.
T Consensus 86 ~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~ 165 (396)
T PRK12735 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG 165 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999999998888999965 679999996421 12222344443 3433
Q ss_pred -ccccccccccccc----------chhHHHHHHHHhCCCCCCCCCCCceEEEEEEEeecc-----------------ceE
Q 043429 235 -CTNAILCSAKEGI----------GINEILNAIVKRIPPPSNTAGCPFRALIFDRIIMLM-----------------KLE 286 (646)
Q Consensus 235 -~~~i~~vSAk~g~----------GV~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~~d~~-----------------~~i 286 (646)
..+++++||++|. |+.+|++.|.+.+|+|..+.+.||++.|.++++.++ +++
T Consensus 166 ~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v 245 (396)
T PRK12735 166 DDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEV 245 (396)
T ss_pred CceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCccCCCCeEEEEEEEEecCCceEEEEEEEEecEEeCCCEE
Confidence 2578999999984 788999999999998888889999999999998776 788
Q ss_pred EecCCC--ceEEc--------------cce-eeEEEeecccccccccCCeeeecC
Q 043429 287 CYPPIK--CKWKN--------------FKQ-VGYLSASIRSVADARVGDTITHFN 324 (646)
Q Consensus 287 ~~~~~~--~~~~v--------------aG~-Vg~i~~~i~~~~~~~~GDtl~~~~ 324 (646)
++++.+ +...| ||| |++.+.++ +..+++.||+|++.+
T Consensus 246 ~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i-~~~~i~rG~vl~~~~ 299 (396)
T PRK12735 246 EIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGT-KREDVERGQVLAKPG 299 (396)
T ss_pred EEecCCCCeEEEEEEEEECCeEeCEECCCCEEEEEeCCC-cHHHCCcceEEEcCC
Confidence 888763 34444 999 77766666 347899999998764
No 41
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.95 E-value=3.3e-28 Score=238.55 Aligned_cols=176 Identities=43% Similarity=0.608 Sum_probs=152.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCcccccc---ccccccccccccccceeeeeeEEEEE--EEecCCCeEEEEEe
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREM---KEQFLDNMDLERERGITIKLQAARMR--YVFENEPFCLNLID 157 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~---~~~~~d~~~~e~e~giTi~~~~~~~~--~~~~~~~~~l~liD 157 (646)
++++||+++||.|||||||+++|+...+.+...+. ...++|..+.|+++|+|+......+. +. .+.++++|
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~----~~~i~~iD 76 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNEN----NRKITLID 76 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTES----SEEEEEEE
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccccccc----ccceeecc
Confidence 35799999999999999999999998887766442 24568899999999999999888877 44 89999999
Q ss_pred CCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHh----CC
Q 043429 158 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVI----GL 233 (646)
Q Consensus 158 TPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l----~~ 233 (646)
||||.+|..++.+++..+|++|+|||+.+|.+.++.+.+..+...++|+++|+||+|+...+..+..+++.+.+ +.
T Consensus 77 tPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~ 156 (188)
T PF00009_consen 77 TPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGE 156 (188)
T ss_dssp ESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred cccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999998666666666666443 43
Q ss_pred C---cccccccccccccchhHHHHHHHHhCCC
Q 043429 234 D---CTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 234 ~---~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
. ..|++++||++|.|+++|+++|.+.+|.
T Consensus 157 ~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 157 NGEEIVPVIPISALTGDGIDELLEALVELLPS 188 (188)
T ss_dssp TTTSTEEEEEEBTTTTBTHHHHHHHHHHHS--
T ss_pred CccccceEEEEecCCCCCHHHHHHHHHHhCcC
Confidence 3 2479999999999999999999999984
No 42
>PRK00049 elongation factor Tu; Reviewed
Probab=99.95 E-value=2.6e-27 Score=257.90 Aligned_cols=237 Identities=28% Similarity=0.328 Sum_probs=187.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCcccc-ccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKR-EMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH 161 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~-~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~ 161 (646)
+..+||+++||+|||||||+++|++........ ....+.+|..+.|+++|+|++.....+.+ ++..++|+|||||
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~----~~~~i~~iDtPG~ 85 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET----EKRHYAHVDCPGH 85 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC----CCeEEEEEECCCH
Confidence 346899999999999999999999843221111 11234789999999999999987655433 3678999999999
Q ss_pred ccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeE-EEEeccCCCCCC--chHHHHHHHHHh---CC--
Q 043429 162 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEII-PVLNKIDLPGAE--PSRVAREIEEVI---GL-- 233 (646)
Q Consensus 162 ~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piI-vViNKiDl~~~~--~~~~~~el~~~l---~~-- 233 (646)
.+|...+.+.+..+|++++|+|+..|.+.++.+.|..+...++|.+ +++||+|+.+.. .+...+++.+.+ ++
T Consensus 86 ~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (396)
T PRK00049 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG 165 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999976 689999996421 122334555544 33
Q ss_pred Cccccccccccccc----------chhHHHHHHHHhCCCCCCCCCCCceEEEEEEEeecc-----------------ceE
Q 043429 234 DCTNAILCSAKEGI----------GINEILNAIVKRIPPPSNTAGCPFRALIFDRIIMLM-----------------KLE 286 (646)
Q Consensus 234 ~~~~i~~vSAk~g~----------GV~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~~d~~-----------------~~i 286 (646)
...+++++||++|. |+..|+++|.+.+|+|....+.||++.|.+++..++ +++
T Consensus 166 ~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v 245 (396)
T PRK00049 166 DDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEV 245 (396)
T ss_pred cCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecCCEE
Confidence 23578999999875 678999999999998888889999999999988765 788
Q ss_pred EecCC--CceEEc--------------cce-eeEEEeecccccccccCCeeeecC
Q 043429 287 CYPPI--KCKWKN--------------FKQ-VGYLSASIRSVADARVGDTITHFN 324 (646)
Q Consensus 287 ~~~~~--~~~~~v--------------aG~-Vg~i~~~i~~~~~~~~GDtl~~~~ 324 (646)
.+++. ++..+| +|| ||+.+.++ +..+++.||++++.+
T Consensus 246 ~i~p~~~~~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i-~~~~i~~G~vl~~~~ 299 (396)
T PRK00049 246 EIVGIRDTQKTTVTGVEMFRKLLDEGQAGDNVGALLRGI-KREDVERGQVLAKPG 299 (396)
T ss_pred EEeecCCCceEEEEEEEECCcEeCEEcCCCEEEEEeCCC-CHHHCCcceEEecCC
Confidence 88765 455554 998 77766666 347899999998754
No 43
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.95 E-value=8.9e-27 Score=263.07 Aligned_cols=389 Identities=22% Similarity=0.284 Sum_probs=254.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
+.++|+++||+|||||||+++|.... ......+|+|.......+.+. ....++|||||||++
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~---------------v~~~e~~GIT~~ig~~~v~~~---~~~~i~~iDTPGhe~ 147 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTK---------------VAQGEAGGITQHIGAYHVENE---DGKMITFLDTPGHEA 147 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCC---------------cccccCCceeecceEEEEEEC---CCcEEEEEECCCCcc
Confidence 45799999999999999999997621 112234678888777666663 123899999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCC------ccc
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLD------CTN 237 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~------~~~ 237 (646)
|..++.++++.+|++++|||++++...||...+..+...++|+++++||+|+++++.++..+++.+ +++. ..+
T Consensus 148 F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~-~g~~~~~~~~~~~ 226 (587)
T TIGR00487 148 FTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSE-YGLVPEDWGGDTI 226 (587)
T ss_pred hhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHH-hhhhHHhcCCCce
Confidence 999999999999999999999999999999999888889999999999999988777666655543 2221 136
Q ss_pred ccccccccccchhHHHHHHHHh--CCCCCCCCCCCceEEEEEEEeecc-----------------ceEEe---------c
Q 043429 238 AILCSAKEGIGINEILNAIVKR--IPPPSNTAGCPFRALIFDRIIMLM-----------------KLECY---------P 289 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~--ip~P~~~~~~pl~~~vf~~~~d~~-----------------~~i~~---------~ 289 (646)
++++||++|.|+++++++|... ++.+..+++.|+++.|+++.+|++ |.+.. +
T Consensus 227 ~v~iSAktGeGI~eLl~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~iv~~~~~~kVr~l 306 (587)
T TIGR00487 227 FVPVSALTGDGIDELLDMILLQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDIVVVGAAYGRVRAM 306 (587)
T ss_pred EEEEECCCCCChHHHHHhhhhhhhhccccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCEEEECCCccEEEEE
Confidence 8999999999999999999653 444555677999999999999986 33322 2
Q ss_pred CC--Cce-EEc-cceeeEEEeeccccccc-ccCCeeeecCccc--------------------cCC--CCCcc-----cC
Q 043429 290 PI--KCK-WKN-FKQVGYLSASIRSVADA-RVGDTITHFNRKA--------------------DNL--LPGYE-----EA 337 (646)
Q Consensus 290 ~~--~~~-~~v-aG~Vg~i~~~i~~~~~~-~~GDtl~~~~~~~--------------------~~~--l~~~~-----~~ 337 (646)
.. ++. -++ ||+++.+. |+ .++ ..||++.-..+.. ..+ +..+. ..
T Consensus 307 ~~~~g~~v~~a~~g~~v~i~-Gl---~~~p~aGd~~~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (587)
T TIGR00487 307 IDENGKSVKEAGPSKPVEIL-GL---SDVPAAGDEFIVFKDEKDARLVAEKRAGKLRQKALSRSVKVTLDNLFEQIKEGE 382 (587)
T ss_pred ECCCCCCCCEECCCCEEEEe-CC---CCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHhhhhccccchhHhhhhhhccC
Confidence 21 111 111 88876554 54 444 7899997432210 000 11111 12
Q ss_pred CceEEeeeeeCCCCCHHHHHHHHHHHhhcCCceEEEe--------------CCCccccceeEeccchhhHHHHHHHHHHH
Q 043429 338 TPMVFCGLFPVDADQFPELRDALEKLQLNDAALKFEP--------------ETSSAMGFGFRCGFLGLLHMEIVQERLER 403 (646)
Q Consensus 338 ~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~~~~--------------e~~~~lg~g~r~gflG~lHlei~~erL~~ 403 (646)
.|.+...+.+...+..+.|.++|.+|..+|+++.+-. .++.++.-||-+. +--+ + +.+-+
T Consensus 383 ~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~~~~vG~i~~~Dv~~a~~~~a~i~~Fnv~----~~~~-~-~~~a~ 456 (587)
T TIGR00487 383 LKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVIHSGVGGITETDISLASASNAIIIGFNVR----PDAT-A-KNVAE 456 (587)
T ss_pred CceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEEEeecCCCchhhHHHHHhcCCEEEEEecC----CCHH-H-HHHHH
Confidence 3778899999999999999999999999999998641 1222333333333 2222 2 33444
Q ss_pred HcCceEEEecceeEEEEEeeCCeEEEEeCCCCCCCCcccccccccEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeCC
Q 043429 404 EYNLSLITTAPSVVYRVNCVNGQTVECSNPSLLPEPGQRRSIEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTE 483 (646)
Q Consensus 404 e~~~~v~~t~P~V~Y~e~~~~g~~~~~~~p~~~p~~~~i~~llEP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~ 483 (646)
+.|+++... .|+|+-.- + + ...+..+++|...-.++-+.+.. .|.. .++-|.+.+....++
T Consensus 457 ~~~v~i~~~--~iIY~l~d-~-----------~--~~~~~~~~~~~~~~~~~g~a~v~-~vf~--~~~~~~iaG~~V~~G 517 (587)
T TIGR00487 457 AENVDIRYY--SVIYKLID-E-----------I--RAAMKGMLDPEYEEEIIGQAEVR-QVFN--VPKIGNIAGCYVTEG 517 (587)
T ss_pred HcCCeEEEe--ChHHHHHH-H-----------H--HHHHHhccCcceeeEeeeeEEEE-EEEe--cCCCCEEEEEEEecC
Confidence 457766554 56665210 0 0 00112334444333333232211 0000 012345555433321
Q ss_pred -----CEE------EEEEEechhhhHhhHHHHhcccCcceEEEEEEEcce
Q 043429 484 -----SRA------SLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGY 522 (646)
Q Consensus 484 -----~~~------~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y 522 (646)
..+ .+.|.-.++.| ..|-++++.+..|+ .+-..+.+|
T Consensus 518 ~i~~~~~~~v~r~~~~i~~g~i~sl-~~~k~~v~ev~~g~-ecgi~~~~~ 565 (587)
T TIGR00487 518 VIKRGNPLRVIRDGVVIFEGEIDSL-KRFKDDVKEVSNGY-ECGIGIKNY 565 (587)
T ss_pred EEecCCeEEEEeCCEEEEeccchHh-hccCccccEECCCC-EEEEEEecc
Confidence 111 23366788888 89999999999998 455555554
No 44
>PLN03127 Elongation factor Tu; Provisional
Probab=99.95 E-value=1.4e-26 Score=254.58 Aligned_cols=239 Identities=26% Similarity=0.318 Sum_probs=183.1
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCcccc-ccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeC
Q 043429 80 VPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKR-EMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDT 158 (646)
Q Consensus 80 ~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~-~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDT 158 (646)
...+..+||+++||+|||||||+++|+.......+. ......+|..+.|+++|+|++.....+++ ++..++|+||
T Consensus 56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~----~~~~i~~iDt 131 (447)
T PLN03127 56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET----AKRHYAHVDC 131 (447)
T ss_pred hcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC----CCeEEEEEEC
Confidence 334567899999999999999999997532111000 01112589999999999999987655444 3678999999
Q ss_pred CCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCC--chHHHHHHHHHh---C
Q 043429 159 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPGAE--PSRVAREIEEVI---G 232 (646)
Q Consensus 159 PG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~--~~~~~~el~~~l---~ 232 (646)
|||.+|...+...+..+|++++|+|+.+|...||.+++..+...++| +|+|+||+|+.+.. .+...+++.+.+ +
T Consensus 132 PGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~ 211 (447)
T PLN03127 132 PGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK 211 (447)
T ss_pred CCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999 57899999986422 122223444443 3
Q ss_pred CC--cccccccccc---cccc-------hhHHHHHHHHhCCCCCCCCCCCceEEEEEEEeecc-----------------
Q 043429 233 LD--CTNAILCSAK---EGIG-------INEILNAIVKRIPPPSNTAGCPFRALIFDRIIMLM----------------- 283 (646)
Q Consensus 233 ~~--~~~i~~vSAk---~g~G-------V~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~~d~~----------------- 283 (646)
++ ..|++++||. +|.| +.+|++++.+.+|+|..+.+.||++.|.+++..+.
T Consensus 212 ~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~G 291 (447)
T PLN03127 212 FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVG 291 (447)
T ss_pred CCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcccccceEeeEEEEEEcCCceEEEEEEEEccEEecC
Confidence 32 2468888876 4555 78999999999998988888999999999887765
Q ss_pred ceEEecCC----CceEEc--------------cce-eeEEEeecccccccccCCeeeec
Q 043429 284 KLECYPPI----KCKWKN--------------FKQ-VGYLSASIRSVADARVGDTITHF 323 (646)
Q Consensus 284 ~~i~~~~~----~~~~~v--------------aG~-Vg~i~~~i~~~~~~~~GDtl~~~ 323 (646)
++|++++. +....| ||| |++.+.++ +..+++.||+|++.
T Consensus 292 d~v~i~p~~~~g~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i-~~~~i~rG~Vl~~~ 349 (447)
T PLN03127 292 EEVEIVGLRPGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGL-KREDVQRGQVICKP 349 (447)
T ss_pred CEEEEcccCCCCcEEEEEEEEEEECcEeCEEcCCCEEEEEeCCC-CHHHCCCccEEecC
Confidence 78888854 233444 898 77777666 34789999999875
No 45
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.95 E-value=8e-27 Score=240.71 Aligned_cols=176 Identities=39% Similarity=0.653 Sum_probs=155.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccc-------cccccccccccccccceeeeeeEEEEEEEecCCCeEEEEE
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE-------MKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLI 156 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~-------~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~li 156 (646)
++|||+|+||+|+|||||+++|++.++.+.+.+ .+.+++|+.+.|++||+|+......+.|. ++.+++|
T Consensus 1 ~~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~----~~~i~li 76 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYR----DCVINLL 76 (267)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeC----CEEEEEE
Confidence 369999999999999999999999888877653 25678999999999999999999998887 8999999
Q ss_pred eCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCc-
Q 043429 157 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDC- 235 (646)
Q Consensus 157 DTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~- 235 (646)
|||||.+|..++..+++.+|++|+|+|++++.+.++...|..+...++|+++|+||+|+.+++..++.+++++.++.+.
T Consensus 77 DTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~~~~ 156 (267)
T cd04169 77 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEELGIDCT 156 (267)
T ss_pred ECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHHHHHHCCCce
Confidence 9999999999999999999999999999999999988888888788999999999999988887777777776654210
Q ss_pred --------------------------------------------------------------------------------
Q 043429 236 -------------------------------------------------------------------------------- 235 (646)
Q Consensus 236 -------------------------------------------------------------------------------- 235 (646)
T Consensus 157 ~~~~Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~e~~~e~~~~l~e~~~e~~~~~~~~~~~~~~~~~~~ 236 (267)
T cd04169 157 PLTWPIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDDPKLDELGGDLAEQLREELELLEGAGPEFDQEAFLA 236 (267)
T ss_pred eEEecccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccHHHHHhcCHHHHHHHhCCCccchhhhHHHhHHHHHc
Confidence
Q ss_pred ---ccccccccccccchhHHHHHHHHhCCCC
Q 043429 236 ---TNAILCSAKEGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 236 ---~~i~~vSAk~g~GV~eLl~~I~~~ip~P 263 (646)
.|+++.||.++.|+..|++.|.+.+|+|
T Consensus 237 ~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 237 GELTPVFFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred CCEEEEEecccccCcCHHHHHHHHHHHCCCC
Confidence 0689999999999999999999999987
No 46
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.95 E-value=8.9e-27 Score=236.46 Aligned_cols=173 Identities=43% Similarity=0.591 Sum_probs=157.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccc---cccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKRE---MKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~---~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
||+++||+|+|||||+++|++.++.+.+.+ .+.+++|+.+.|+++|+|+......+.|. ++++++||||||.+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~----~~~i~liDTPG~~~ 76 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWE----DTKVNLIDTPGHMD 76 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEEC----CEEEEEEeCCCccc
Confidence 689999999999999999999988876643 35688999999999999999999888887 89999999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCc--------
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDC-------- 235 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~-------- 235 (646)
|..++.++++.+|++++|+|++++.+.++...|..+.+.++|+++|+||+|+.+++..++.+++++.++...
T Consensus 77 f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~ 156 (237)
T cd04168 77 FIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGL 156 (237)
T ss_pred hHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcE
Confidence 999999999999999999999999999999999988889999999999999999998999999988876421
Q ss_pred -----------------------------------------------------ccccccccccccchhHHHHHHHHhCCC
Q 043429 236 -----------------------------------------------------TNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 236 -----------------------------------------------------~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
.|+++.||.++.|+..|++.|.+.+|+
T Consensus 157 ~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~ 236 (237)
T cd04168 157 APNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFPT 236 (237)
T ss_pred eeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcCC
Confidence 178999999999999999999999998
Q ss_pred C
Q 043429 263 P 263 (646)
Q Consensus 263 P 263 (646)
|
T Consensus 237 ~ 237 (237)
T cd04168 237 S 237 (237)
T ss_pred C
Confidence 7
No 47
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.95 E-value=1.2e-26 Score=239.68 Aligned_cols=142 Identities=44% Similarity=0.592 Sum_probs=130.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccc---cccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKRE---MKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~---~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
||+|+||+|+|||||+++|+..+|.+.+.+ .+++++|..+.|++||+|+......+.|. ++.+++||||||.+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~----~~~i~liDTPG~~d 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK----DHRINIIDTPGHVD 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC----CEEEEEEECCCcHH
Confidence 689999999999999999999888776543 35789999999999999999999999997 89999999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhC
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIG 232 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~ 232 (646)
|..++.++++.+|++|+|+|+.+|.+.++...|..+...++|+++|+||+|+.+++.+...+++++.++
T Consensus 77 f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~ 145 (270)
T cd01886 77 FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLG 145 (270)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999998887777777777664
No 48
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.94 E-value=4.8e-26 Score=249.99 Aligned_cols=227 Identities=25% Similarity=0.277 Sum_probs=174.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEE-------------EecCC--
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRY-------------VFENE-- 149 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~-------------~~~~~-- 149 (646)
..+|+++||+|||||||+.+|... -.|.++.|.+||+|++..+..+.+ .....
T Consensus 34 ~~~ig~~GHVDhGKTtLv~aLtg~------------~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~ 101 (460)
T PTZ00327 34 TINIGTIGHVAHGKSTVVKALSGV------------KTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKP 101 (460)
T ss_pred cEEEEEEccCCCCHHHHHHHHhCC------------CcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcc
Confidence 478999999999999999999742 235677899999999988776532 00000
Q ss_pred --------------CeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCC-ccHhhHHHHHHHHHcCCC-eEEEEecc
Q 043429 150 --------------PFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG-VEAQTLANVYLALENNLE-IIPVLNKI 213 (646)
Q Consensus 150 --------------~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g-~~~qt~~~~~~~~~~~~p-iIvViNKi 213 (646)
...++|+|||||.+|...+...+..+|++++|||+.++ .+.||.+++..+...+++ +|+|+||+
T Consensus 102 ~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKi 181 (460)
T PTZ00327 102 DNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKI 181 (460)
T ss_pred cccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecc
Confidence 24789999999999999999999999999999999996 799999999888778876 88999999
Q ss_pred CCCCCC-chHHHHHHHHHhC---CCcccccccccccccchhHHHHHHHHhCCCCCCCCCCCceEEEEEEEe--------e
Q 043429 214 DLPGAE-PSRVAREIEEVIG---LDCTNAILCSAKEGIGINEILNAIVKRIPPPSNTAGCPFRALIFDRII--------M 281 (646)
Q Consensus 214 Dl~~~~-~~~~~~el~~~l~---~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~~--------d 281 (646)
|+.+.. .++..+++.+.+. ....+++++||++|.|+++|++.|.+.+|+|..+.+.||++.|.+++. |
T Consensus 182 Dlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V~~~g~~~~ 261 (460)
T PTZ00327 182 DLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIPKRDLTSPPRMIVIRSFDVNKPGEDIE 261 (460)
T ss_pred cccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCCCCCCCCcEEEEEEEEeecccCCccc
Confidence 987532 3444556655442 234579999999999999999999999999988888999998876541 2
Q ss_pred cc-----------------ceEEecCCCc-------------eEEc--------------cce-eeEEEe---ecccccc
Q 043429 282 LM-----------------KLECYPPIKC-------------KWKN--------------FKQ-VGYLSA---SIRSVAD 313 (646)
Q Consensus 282 ~~-----------------~~i~~~~~~~-------------~~~v--------------aG~-Vg~i~~---~i~~~~~ 313 (646)
.| |+|.+.+++. ..+| ||| |+..+. ++ ...+
T Consensus 262 ~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~~~~v~~a~aG~~vai~l~ld~~v-~~~d 340 (460)
T PTZ00327 262 NLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAENNELQYAVPGGLIGVGTTIDPTL-TRAD 340 (460)
T ss_pred CCceEEEEEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEECCeECCEEcCCCEEEEEeccCCCc-chhh
Confidence 22 7888888641 2233 888 444332 22 2357
Q ss_pred cccCCeeeecC
Q 043429 314 ARVGDTITHFN 324 (646)
Q Consensus 314 ~~~GDtl~~~~ 324 (646)
+..||.++.++
T Consensus 341 v~rG~Vl~~~~ 351 (460)
T PTZ00327 341 RLVGQVLGYPG 351 (460)
T ss_pred cccccEEEcCC
Confidence 88999998754
No 49
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.94 E-value=1.3e-25 Score=245.41 Aligned_cols=229 Identities=27% Similarity=0.289 Sum_probs=174.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEe------------c-----
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVF------------E----- 147 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~------------~----- 147 (646)
-.||+++||.|||||||+++|.. .++|..+.|+++|+|+........+.. .
T Consensus 9 ~~ni~v~Gh~d~GKSTL~~~L~~------------~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (411)
T PRK04000 9 EVNIGMVGHVDHGKTTLVQALTG------------VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPN 76 (411)
T ss_pred cEEEEEEccCCCCHHHHHHHhhC------------eecccCHhHHhcCcEEEecccccccccccccCccccccccccccc
Confidence 47999999999999999999933 246788889999999998765544420 0
Q ss_pred -C----CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCc-cHhhHHHHHHHHHcCC-CeEEEEeccCCCCCCc
Q 043429 148 -N----EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV-EAQTLANVYLALENNL-EIIPVLNKIDLPGAEP 220 (646)
Q Consensus 148 -~----~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~-~~qt~~~~~~~~~~~~-piIvViNKiDl~~~~~ 220 (646)
+ ....++|||||||.+|...+...+..+|++++|+|++++. ..++...+..+...++ |+++|+||+|+.+.+.
T Consensus 77 ~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~ 156 (411)
T PRK04000 77 CGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKER 156 (411)
T ss_pred cccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchh
Confidence 0 1368999999999999999888889999999999999987 7888888877766776 5899999999975432
Q ss_pred -hHHHHHHHHHhC---CCcccccccccccccchhHHHHHHHHhCCCCCCCCCCCceEEEEEEEe--------ecc-----
Q 043429 221 -SRVAREIEEVIG---LDCTNAILCSAKEGIGINEILNAIVKRIPPPSNTAGCPFRALIFDRII--------MLM----- 283 (646)
Q Consensus 221 -~~~~~el~~~l~---~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~~--------d~~----- 283 (646)
....+++.+.+. ....+++++||++|.|+++|+++|.+.+|+|..+.+.||++.|.++++ |++
T Consensus 157 ~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv 236 (411)
T PRK04000 157 ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGVI 236 (411)
T ss_pred HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCCCCCCCCceEEEEeeeeecCCCccccCCcceEE
Confidence 223344554442 123578999999999999999999999998888889999999998762 333
Q ss_pred ------------ceEEecCCCc------------eEEc--------------cce-eeEEEe---ecccccccccCCeee
Q 043429 284 ------------KLECYPPIKC------------KWKN--------------FKQ-VGYLSA---SIRSVADARVGDTIT 321 (646)
Q Consensus 284 ------------~~i~~~~~~~------------~~~v--------------aG~-Vg~i~~---~i~~~~~~~~GDtl~ 321 (646)
+.|.++++++ ...| ||| ||..+. ++ +..+++.||.|+
T Consensus 237 ~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~~~~~~~a~~G~~v~i~l~~~~~i-~~~~i~~G~vl~ 315 (411)
T PRK04000 237 GGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAGGEKVEEARPGGLVGVGTKLDPSL-TKADALAGSVAG 315 (411)
T ss_pred EEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEECCEECCEEcCCCEEEEEeccCCCC-CHHHccCccEEE
Confidence 7888988753 2233 888 444332 22 236788999998
Q ss_pred ecCcc
Q 043429 322 HFNRK 326 (646)
Q Consensus 322 ~~~~~ 326 (646)
+.+++
T Consensus 316 ~~~~~ 320 (411)
T PRK04000 316 KPGTL 320 (411)
T ss_pred cCCCC
Confidence 86543
No 50
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.94 E-value=5.8e-26 Score=227.66 Aligned_cols=178 Identities=41% Similarity=0.675 Sum_probs=146.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCcccccc-ccccccccccccccceeeeeeEEEEEEEec------CCCeEEEEEeC
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREM-KEQFLDNMDLERERGITIKLQAARMRYVFE------NEPFCLNLIDT 158 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~-~~~~~d~~~~e~e~giTi~~~~~~~~~~~~------~~~~~l~liDT 158 (646)
|||+|+||++||||||+++|+..++.+.+... ...++|..+.|++||+|+++...++.|... +..+.+++|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 79999999999999999999999887765542 456899999999999999999888888643 45789999999
Q ss_pred CCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCC----CCchHH-------HHHH
Q 043429 159 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPG----AEPSRV-------AREI 227 (646)
Q Consensus 159 PG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~----~~~~~~-------~~el 227 (646)
|||.+|..++..+++.+|++++|||+++|...++...+..+...++|+++|+||+|+.. ..+++. .+++
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~~~~~~~~~ii~~~ 160 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQRLARIIEQV 160 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999889999999999999862 222222 2222
Q ss_pred HHHhC-C-------------Cccc----ccccccccccc--------hhHHHHHHHHhCCCC
Q 043429 228 EEVIG-L-------------DCTN----AILCSAKEGIG--------INEILNAIVKRIPPP 263 (646)
Q Consensus 228 ~~~l~-~-------------~~~~----i~~vSAk~g~G--------V~eLl~~I~~~ip~P 263 (646)
...+. + ...| +.+.||+.|.+ +..+|+.|++++|+|
T Consensus 161 n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~~~~f~~~~~~~~~~~~~~~~p 222 (222)
T cd01885 161 NAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTIIKFARIYAVLEMVVKHLPSP 222 (222)
T ss_pred hHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEeccccccchHHHHHHHHhhCCCC
Confidence 22110 0 1123 78899998874 457999999999987
No 51
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.94 E-value=1.6e-25 Score=257.66 Aligned_cols=237 Identities=22% Similarity=0.276 Sum_probs=185.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCcccc----------ccc--------cccccccccccccceeeeeeEEEEE
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKR----------EMK--------EQFLDNMDLERERGITIKLQAARMR 143 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~----------~~~--------~~~~d~~~~e~e~giTi~~~~~~~~ 143 (646)
.....||+|+||+|+|||||+++|++.++.+..+ ..+ .+++|..+.|+++|+|++.....+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 3344689999999999999999999999887633 111 3689999999999999999877776
Q ss_pred EEecCCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCC-CeEEEEeccCCCCCCc--
Q 043429 144 YVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNL-EIIPVLNKIDLPGAEP-- 220 (646)
Q Consensus 144 ~~~~~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~-piIvViNKiDl~~~~~-- 220 (646)
+. +..++|||||||.+|...+...+..+|++++|+|+..|...||.+++..+...++ ++++|+||+|+.+.+.
T Consensus 101 ~~----~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~ 176 (632)
T PRK05506 101 TP----KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEV 176 (632)
T ss_pred cC----CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHH
Confidence 65 7889999999999999888889999999999999999999999999888877775 5888999999975332
Q ss_pred -hHHHHHHHH---HhCCCcccccccccccccchhH------------HHHHHHHhCCCCCCCCCCCceEEEEEEEeecc-
Q 043429 221 -SRVAREIEE---VIGLDCTNAILCSAKEGIGINE------------ILNAIVKRIPPPSNTAGCPFRALIFDRIIMLM- 283 (646)
Q Consensus 221 -~~~~~el~~---~l~~~~~~i~~vSAk~g~GV~e------------Ll~~I~~~ip~P~~~~~~pl~~~vf~~~~d~~- 283 (646)
++..+++.+ .+++...+++++||++|.|+++ |++.| +.+++|....+.||++.|-+++...+
T Consensus 177 ~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l-~~~~~~~~~~~~p~r~~i~~v~~~~~~ 255 (632)
T PRK05506 177 FDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHL-ETVEIASDRNLKDFRFPVQYVNRPNLD 255 (632)
T ss_pred HHHHHHHHHHHHHHcCCCCccEEEEecccCCCccccccCCCcccHhHHHHHH-hcCCCCCCcCCCCceeeEEEEEecCCC
Confidence 233344443 3466556799999999999973 66655 45666666678999988866532111
Q ss_pred ----------------ceEEecCCCceEEc--------------cce-eeEEEeecccccccccCCeeeecCcc
Q 043429 284 ----------------KLECYPPIKCKWKN--------------FKQ-VGYLSASIRSVADARVGDTITHFNRK 326 (646)
Q Consensus 284 ----------------~~i~~~~~~~~~~v--------------aG~-Vg~i~~~i~~~~~~~~GDtl~~~~~~ 326 (646)
+++.+++.+....| ||| |+.. +++..+++.||+|++.+++
T Consensus 256 ~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~---l~~~~~i~rG~vL~~~~~~ 326 (632)
T PRK05506 256 FRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPDGDLDEAFAGQAVTLT---LADEIDISRGDMLARADNR 326 (632)
T ss_pred ceEEEEEEecceeecCCEEEEcCCCceEEEEEEEECCceeCEEcCCCeEEEE---ecCccccCCccEEecCCCC
Confidence 78889998877666 888 4433 3455688999999987543
No 52
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.94 E-value=1.5e-25 Score=256.44 Aligned_cols=185 Identities=28% Similarity=0.400 Sum_probs=153.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
.+.++|+|+||+|||||||+++|...... ..+.+|+|.......+.+...+.++.++|||||||.
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~---------------~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe 306 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIA---------------QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE 306 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCc---------------cccCCccccccceEEEEEEecCCceEEEEEECCcHH
Confidence 46789999999999999999999763221 233578888877777777655567899999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHH------hCCCcc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEV------IGLDCT 236 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~------l~~~~~ 236 (646)
+|..++.++++.+|++|||||+++|.+.+|.+.|..+...++|+|+|+||+|+++.+.+++.+++... ++ ...
T Consensus 307 ~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g-~~v 385 (742)
T CHL00189 307 AFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWG-GDT 385 (742)
T ss_pred HHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhC-CCc
Confidence 99999999999999999999999999999999999888899999999999999887766655555432 12 124
Q ss_pred cccccccccccchhHHHHHHHHhC--CCCCCCCCCCceEEEEEEEeecc
Q 043429 237 NAILCSAKEGIGINEILNAIVKRI--PPPSNTAGCPFRALIFDRIIMLM 283 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~i--p~P~~~~~~pl~~~vf~~~~d~~ 283 (646)
+++++||++|.|+++|+++|.... ..+..+++.|+.+.||++..|++
T Consensus 386 pvv~VSAktG~GIdeLle~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~ 434 (742)
T CHL00189 386 PMIPISASQGTNIDKLLETILLLAEIEDLKADPTQLAQGIILEAHLDKT 434 (742)
T ss_pred eEEEEECCCCCCHHHHHHhhhhhhhhhcccCCCCCCceEEEEEEEEcCC
Confidence 799999999999999999998754 23445667899999999999987
No 53
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.93 E-value=3.4e-25 Score=252.04 Aligned_cols=220 Identities=24% Similarity=0.293 Sum_probs=173.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
-|+++||+|||||||+++|.+. -+|..+.|+++|+|++.....+... .+..+++||||||++|..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~------------~~dr~~eE~~rGiTI~l~~~~~~~~---~g~~i~~IDtPGhe~fi~ 66 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGV------------NADRLPEEKKRGMTIDLGYAYWPQP---DGRVLGFIDVPGHEKFLS 66 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCC------------CCccchhcccCCceEEeeeEEEecC---CCcEEEEEECCCHHHHHH
Confidence 4899999999999999999641 1366778899999999876654332 246789999999999999
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCCC-CchHHHHHHHHHh---CCCccccccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPGA-EPSRVAREIEEVI---GLDCTNAILC 241 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~-~~~~~~~el~~~l---~~~~~~i~~v 241 (646)
.+..++..+|++++|||+++|...||.+++..+...++| +++|+||+|+.+. ..+...+++.+.+ ++...+++++
T Consensus 67 ~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~V 146 (614)
T PRK10512 67 NMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVT 146 (614)
T ss_pred HHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 999999999999999999999999999998888778888 5799999999653 2344455665554 4444679999
Q ss_pred ccccccchhHHHHHHHHhCCCCCCCCCCCceEEEEEEEeecc-----------------ceEEecCCCceEEc-------
Q 043429 242 SAKEGIGINEILNAIVKRIPPPSNTAGCPFRALIFDRIIMLM-----------------KLECYPPIKCKWKN------- 297 (646)
Q Consensus 242 SAk~g~GV~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~~d~~-----------------~~i~~~~~~~~~~v------- 297 (646)
||++|.|+++|+++|.+. ++|....+.||++.|-+++..++ ++|.+++.+....|
T Consensus 147 SA~tG~gI~~L~~~L~~~-~~~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~~~ 225 (614)
T PRK10512 147 AATEGRGIDALREHLLQL-PEREHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVNKPMRVRGLHAQN 225 (614)
T ss_pred eCCCCCCCHHHHHHHHHh-hccccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcCCCCcEEEEEEecCC
Confidence 999999999999999765 45555578899988866554444 78888888776666
Q ss_pred -------ccee-eEEEee-cccccccccCCeeeec
Q 043429 298 -------FKQV-GYLSAS-IRSVADARVGDTITHF 323 (646)
Q Consensus 298 -------aG~V-g~i~~~-i~~~~~~~~GDtl~~~ 323 (646)
|||. +..+.| + +..+++.||+++..
T Consensus 226 ~~v~~a~aG~rval~l~g~~-~~~~i~rGdvl~~~ 259 (614)
T PRK10512 226 QPTEQAQAGQRIALNIAGDA-EKEQINRGDWLLAD 259 (614)
T ss_pred cCCCEEeCCCeEEEEecCCC-ChhhCCCcCEEeCC
Confidence 8984 444443 3 35689999999865
No 54
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.93 E-value=3.6e-25 Score=241.95 Aligned_cols=227 Identities=27% Similarity=0.288 Sum_probs=173.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEE------------e----cC
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYV------------F----EN 148 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~------------~----~~ 148 (646)
..||+++||+|||||||+++|.. ..+|....|++||+|+...+..+.+. . ++
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~------------~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTG------------VWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPN 71 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhC------------eecccCHhHHHcCceeEecccccccccccccCccccccccccccc
Confidence 35899999999999999999943 23577888999999999876654422 1 01
Q ss_pred ------CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCc-cHhhHHHHHHHHHcCC-CeEEEEeccCCCCCCc
Q 043429 149 ------EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV-EAQTLANVYLALENNL-EIIPVLNKIDLPGAEP 220 (646)
Q Consensus 149 ------~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~-~~qt~~~~~~~~~~~~-piIvViNKiDl~~~~~ 220 (646)
....+++||||||++|...+..++..+|++++|||++++. ..++.+++..+...++ |+++|+||+|+.+.+.
T Consensus 72 ~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~ 151 (406)
T TIGR03680 72 CGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEK 151 (406)
T ss_pred cccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHH
Confidence 1468999999999999999999999999999999999998 8888888887776765 4899999999975432
Q ss_pred -hHHHHHHHHHhC---CCcccccccccccccchhHHHHHHHHhCCCCCCCCCCCceEEEEEEEe--------ecc-----
Q 043429 221 -SRVAREIEEVIG---LDCTNAILCSAKEGIGINEILNAIVKRIPPPSNTAGCPFRALIFDRII--------MLM----- 283 (646)
Q Consensus 221 -~~~~~el~~~l~---~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~~--------d~~----- 283 (646)
.+..+++.+.+. ....+++++||++|.|+++|+++|...+|+|..+.+.||++.|.+++. |.|
T Consensus 152 ~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv 231 (406)
T TIGR03680 152 ALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVI 231 (406)
T ss_pred HHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCccccCCceeEE
Confidence 223344444432 123479999999999999999999998998888889999999998772 222
Q ss_pred ------------ceEEecCCCc------------eEEc--------------cce-eeEEEe---ecccccccccCCeee
Q 043429 284 ------------KLECYPPIKC------------KWKN--------------FKQ-VGYLSA---SIRSVADARVGDTIT 321 (646)
Q Consensus 284 ------------~~i~~~~~~~------------~~~v--------------aG~-Vg~i~~---~i~~~~~~~~GDtl~ 321 (646)
|+|.+++++. ...| +|| ||..+. ++ +..++..||.++
T Consensus 232 ~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~~~~~~~a~~G~~v~i~l~~~~~i-~~~dv~~G~vl~ 310 (406)
T TIGR03680 232 GGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAGGYKVEEARPGGLVGVGTKLDPAL-TKADALAGQVVG 310 (406)
T ss_pred EEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEECCEECCEEcCCCEEEEeeccCCCC-CHHHcccccEEE
Confidence 7888888742 1233 887 554331 22 346788899998
Q ss_pred ecC
Q 043429 322 HFN 324 (646)
Q Consensus 322 ~~~ 324 (646)
+.+
T Consensus 311 ~~~ 313 (406)
T TIGR03680 311 KPG 313 (406)
T ss_pred cCC
Confidence 764
No 55
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.92 E-value=2.2e-24 Score=244.68 Aligned_cols=218 Identities=25% Similarity=0.286 Sum_probs=170.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
+|+++||+|||||||+++|.+.. .|..+.|+++|+|++.....+.+. ++.+++||||||++|..
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~------------~d~~~eE~~rGiTid~~~~~~~~~----~~~v~~iDtPGhe~f~~ 65 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIA------------ADRLPEEKKRGMTIDLGFAYFPLP----DYRLGFIDVPGHEKFIS 65 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc------------CcCChhHhcCCceEEeEEEEEEeC----CEEEEEEECCCHHHHHH
Confidence 79999999999999999996521 355667889999999887776654 58999999999999999
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCCc-hHHHHHHHHH---hCCC-cccccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPGAEP-SRVAREIEEV---IGLD-CTNAIL 240 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~~-~~~~~el~~~---l~~~-~~~i~~ 240 (646)
.+..++..+|++++|||+++|...||.+++..+...++| +++|+||+|+.+.+. +...+++.+. +++. ..++++
T Consensus 66 ~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~ 145 (581)
T TIGR00475 66 NAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFK 145 (581)
T ss_pred HHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEE
Confidence 999999999999999999999999999988877778999 999999999975432 2233344433 3332 467999
Q ss_pred cccccccchhHHHHHHHHhCCCCC-CCCCCCceEEEEEEEeecc-----------------ceEEecCCCceEEc-----
Q 043429 241 CSAKEGIGINEILNAIVKRIPPPS-NTAGCPFRALIFDRIIMLM-----------------KLECYPPIKCKWKN----- 297 (646)
Q Consensus 241 vSAk~g~GV~eLl~~I~~~ip~P~-~~~~~pl~~~vf~~~~d~~-----------------~~i~~~~~~~~~~v----- 297 (646)
+||++|.|+++++++|.+.+.... ...+.||++.|-+++.-+. +++.+++.+....|
T Consensus 146 vSA~tG~GI~eL~~~L~~l~~~~~~~~~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~ 225 (581)
T TIGR00475 146 TSAKTGQGIGELKKELKNLLESLDIKRIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPINHEVRVKAIQA 225 (581)
T ss_pred EeCCCCCCchhHHHHHHHHHHhCCCcCcCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECCCCceEEEeEEEE
Confidence 999999999999999876553321 1246899988755443332 88889998887776
Q ss_pred ---------cce-eeEEEeecccccccccCCeee
Q 043429 298 ---------FKQ-VGYLSASIRSVADARVGDTIT 321 (646)
Q Consensus 298 ---------aG~-Vg~i~~~i~~~~~~~~GDtl~ 321 (646)
||| |+..+.++ +..+++.|..+.
T Consensus 226 ~~~~v~~a~aG~rval~L~~i-~~~~i~rG~~~~ 258 (581)
T TIGR00475 226 QNQDVEIAYAGQRIALNLMDV-EPESLKRGLLIL 258 (581)
T ss_pred CCccCCEEECCCEEEEEeCCC-CHHHcCCceEEc
Confidence 888 66655565 456788995554
No 56
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.92 E-value=1.3e-24 Score=214.23 Aligned_cols=174 Identities=31% Similarity=0.416 Sum_probs=139.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCcccc-ccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKR-EMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~-~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
.||+++||+|||||||+++|++......+. ....+.+|..+.|+++|+|++.....+.+. +..++++|||||.+|
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~----~~~i~~iDtPG~~~~ 78 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA----NRHYAHVDCPGHADY 78 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC----CeEEEEEECcCHHHH
Confidence 589999999999999999999864322111 123457899999999999999877665543 788999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCC--chHHHHHHHHHh---CC--Ccc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPGAE--PSRVAREIEEVI---GL--DCT 236 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~--~~~~~~el~~~l---~~--~~~ 236 (646)
...+.+++..+|++++|+|+..|.+.++...|..+...++| +|+|+||+|+.... .+...+++.+.+ ++ ...
T Consensus 79 ~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v 158 (195)
T cd01884 79 IKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNT 158 (195)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCC
Confidence 99999999999999999999999999999999999999998 77999999986321 122334455443 44 235
Q ss_pred cccccccccccch----------hHHHHHHHHhCCCC
Q 043429 237 NAILCSAKEGIGI----------NEILNAIVKRIPPP 263 (646)
Q Consensus 237 ~i~~vSAk~g~GV----------~eLl~~I~~~ip~P 263 (646)
+++++||++|.|+ ..|+++|...+|+|
T Consensus 159 ~iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~~~~~~ 195 (195)
T cd01884 159 PIVRGSALKALEGDDPNKWVKKILELLDALDSYIPTP 195 (195)
T ss_pred eEEEeeCccccCCCCCCcchhcHhHHHHHHHhCCCCC
Confidence 7999999999974 57888887777665
No 57
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=3.8e-24 Score=210.71 Aligned_cols=176 Identities=44% Similarity=0.674 Sum_probs=141.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccc-cccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE-MKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~-~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
.+|+|+++|++|+|||||+++|+...+.+.... ...+++|..+.++.+|+|+......+.+. .+.+++|||||+.
T Consensus 1 ~~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~----~~~~~l~DtpG~~ 76 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYK----DTKINIVDTPGHA 76 (194)
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEEC----CEEEEEEECCCcH
Confidence 368999999999999999999998655554332 23466777778889999988877666665 7899999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHh---CC----Cc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVI---GL----DC 235 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l---~~----~~ 235 (646)
+|...+..+++.+|++++|+|++++...++...+..+...++|+++|+||+|+...+.....+++.+.+ +. ..
T Consensus 77 ~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (194)
T cd01891 77 DFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLD 156 (194)
T ss_pred HHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCc
Confidence 999999999999999999999999876676655666666799999999999998766655566655554 21 13
Q ss_pred ccccccccccccch----------hHHHHHHHHhCCCC
Q 043429 236 TNAILCSAKEGIGI----------NEILNAIVKRIPPP 263 (646)
Q Consensus 236 ~~i~~vSAk~g~GV----------~eLl~~I~~~ip~P 263 (646)
.+++++||++|.|+ ++|++.|.+++|.|
T Consensus 157 ~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (194)
T cd01891 157 FPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVPAP 194 (194)
T ss_pred cCEEEeehhccccccccccchhhHHHHHHHHHhcCCCC
Confidence 47899999999765 57888888888876
No 58
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=4.1e-24 Score=212.71 Aligned_cols=235 Identities=28% Similarity=0.340 Sum_probs=176.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccc-cccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQK-REMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~-~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
.-||+.|||.|||||||..++......... ....-.-.|..+.|++|||||....+ +|.. .+..+..+|+|||.|
T Consensus 12 hVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahv--eyet--~~rhyahVDcPGHaD 87 (394)
T COG0050 12 HVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHV--EYET--ANRHYAHVDCPGHAD 87 (394)
T ss_pred eeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceecccee--EEec--CCceEEeccCCChHH
Confidence 469999999999999999998753211100 01112235778899999999987554 4443 256778999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCC-c-hHH---HHHHHHHhCCC--c
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPGAE-P-SRV---AREIEEVIGLD--C 235 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~-~-~~~---~~el~~~l~~~--~ 235 (646)
|..++.......|++|||+.|++|..+||.++++++.+.++| +++++||+|+.+.. . +.+ ..++.+.++++ .
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~ 167 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDD 167 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999999999999999999998 88899999997632 1 222 23444556776 3
Q ss_pred ccccccccccc--------cchhHHHHHHHHhCCCCCCCCCCCceEEEEEEEeecc-----------------ceEEecC
Q 043429 236 TNAILCSAKEG--------IGINEILNAIVKRIPPPSNTAGCPFRALIFDRIIMLM-----------------KLECYPP 290 (646)
Q Consensus 236 ~~i~~vSAk~g--------~GV~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~~d~~-----------------~~i~~~~ 290 (646)
.|++..||..- ..|.+|++++.+++|.|..+.+.||.+.|-|++.-.. +.+-+.-
T Consensus 168 ~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG 247 (394)
T COG0050 168 TPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVEIVG 247 (394)
T ss_pred cceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCcccccccccceeeEEEcCceeEEEEEEeeeeeccCCEEEEec
Confidence 47888887643 2478999999999999999999999999988765443 2232322
Q ss_pred CCce--EEc--------------cce-eeEEEeecccccccccCCeeeecC
Q 043429 291 IKCK--WKN--------------FKQ-VGYLSASIRSVADARVGDTITHFN 324 (646)
Q Consensus 291 ~~~~--~~v--------------aG~-Vg~i~~~i~~~~~~~~GDtl~~~~ 324 (646)
.+.. ..| ||| ||++..|++ .+++..|..|+.++
T Consensus 248 ~~~~~kttvtgvemfrk~ld~~~AGdnvg~llRg~~-r~~veRGqvLakpg 297 (394)
T COG0050 248 IKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGVK-REDVERGQVLAKPG 297 (394)
T ss_pred ccccceeEEEhHHHHHHHHhccccCCCcceEEEecc-ccceecceEeecCC
Confidence 2211 111 887 999998874 58899999997653
No 59
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.91 E-value=3.3e-24 Score=213.72 Aligned_cols=161 Identities=25% Similarity=0.372 Sum_probs=132.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccc----------------cccccccccccccccceeeeeeEEEEEEEecCCC
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKRE----------------MKEQFLDNMDLERERGITIKLQAARMRYVFENEP 150 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~----------------~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~ 150 (646)
||+|+||+|+|||||+++|++.++.+.... ...+++|..+.|+++|+|++.....+.+. +
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~----~ 76 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP----K 76 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC----C
Confidence 689999999999999999999998876321 23578999999999999999988777665 7
Q ss_pred eEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCCc---hHHHHH
Q 043429 151 FCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPGAEP---SRVARE 226 (646)
Q Consensus 151 ~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~~---~~~~~e 226 (646)
..++|||||||.+|...+..+++.+|++|+|+|++.+...++...+..+...+.| +|+|+||+|+.+... ....++
T Consensus 77 ~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 77 RKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred ceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 8899999999999998888899999999999999999988888777777777765 777999999975432 223333
Q ss_pred H---HHHhCCCcccccccccccccchhH
Q 043429 227 I---EEVIGLDCTNAILCSAKEGIGINE 251 (646)
Q Consensus 227 l---~~~l~~~~~~i~~vSAk~g~GV~e 251 (646)
+ ...++.+..+++++||++|.|+++
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 3 344565556799999999999964
No 60
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.91 E-value=7.8e-24 Score=215.80 Aligned_cols=236 Identities=22% Similarity=0.286 Sum_probs=183.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccc-------c---c--------cccccccccccccceeeeeeEEEEEEE
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE-------M---K--------EQFLDNMDLERERGITIKLQAARMRYV 145 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~-------~---~--------~~~~d~~~~e~e~giTi~~~~~~~~~~ 145 (646)
...+++-+|+++.|||||+.||++.+..+.... + + .-++|.++.|||.||||+.....+.-
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT- 83 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST- 83 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc-
Confidence 357999999999999999999999877665421 1 1 34689999999999999976443332
Q ss_pred ecCCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCCch---
Q 043429 146 FENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPGAEPS--- 221 (646)
Q Consensus 146 ~~~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~~~--- 221 (646)
.+.++.+.|||||+.|...+....+.||.+|++|||..|+..||.++-..+...+++ +++.+|||||.+.+.+
T Consensus 84 ---~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~ 160 (431)
T COG2895 84 ---EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFE 160 (431)
T ss_pred ---ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHH
Confidence 377899999999999999999999999999999999999999999999999888988 8899999999987642
Q ss_pred HHHH---HHHHHhCCCcccccccccccccchh------------HHHHHHHHhCCCCCCCCCCCceEEEEEEE-----ee
Q 043429 222 RVAR---EIEEVIGLDCTNAILCSAKEGIGIN------------EILNAIVKRIPPPSNTAGCPFRALIFDRI-----IM 281 (646)
Q Consensus 222 ~~~~---el~~~l~~~~~~i~~vSAk~g~GV~------------eLl~~I~~~ip~P~~~~~~pl~~~vf~~~-----~d 281 (646)
++.+ .+.+.+++....++++||..|.||- .|++.+ +.+..-......|||..|-.+. |.
T Consensus 161 ~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~L-E~v~i~~~~~~~~~RfPVQ~V~Rp~~dfR 239 (431)
T COG2895 161 AIVADYLAFAAQLGLKDVRFIPISALLGDNVVSKSENMPWYKGPTLLEIL-ETVEIADDRSAKAFRFPVQYVNRPNLDFR 239 (431)
T ss_pred HHHHHHHHHHHHcCCCcceEEechhccCCcccccccCCCcccCccHHHHH-hhccccccccccceeeceEEecCCCCccc
Confidence 2222 3445567777789999999999984 355543 3444334455677888775432 23
Q ss_pred cc------------ceEEecCCCceEEc--------------cce-eeEEEeecccccccccCCeeeecCccc
Q 043429 282 LM------------KLECYPPIKCKWKN--------------FKQ-VGYLSASIRSVADARVGDTITHFNRKA 327 (646)
Q Consensus 282 ~~------------~~i~~~~~~~~~~v--------------aG~-Vg~i~~~i~~~~~~~~GDtl~~~~~~~ 327 (646)
.| +.|.++++|+...| +|+ |..+ +.+--++..||.|++.+.++
T Consensus 240 GyaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg~~~~A~aG~aVtl~---L~deidisRGd~i~~~~~~~ 309 (431)
T COG2895 240 GYAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDGELAQASAGEAVTLV---LADEIDISRGDLIVAADAPP 309 (431)
T ss_pred ccceeeeccceecCCeEEEccCCCeeeEEEEeccCCchhhccCCceEEEE---EcceeecccCcEEEccCCCc
Confidence 33 78999999998877 777 4333 34667899999999887654
No 61
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.91 E-value=1.4e-23 Score=206.36 Aligned_cols=170 Identities=29% Similarity=0.387 Sum_probs=136.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEe----------cCCCeEEEEE
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVF----------ENEPFCLNLI 156 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~----------~~~~~~l~li 156 (646)
||+++|++|+|||||+++|+...+ ...+|....++++|+|++.....+.+.. .+.++.+++|
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~--------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 73 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIAS--------TAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLV 73 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccc--------hhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEE
Confidence 799999999999999999987421 2345667778899999999888777752 2347899999
Q ss_pred eCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC-chHHHHHHHHH----h
Q 043429 157 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE-PSRVAREIEEV----I 231 (646)
Q Consensus 157 DTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~-~~~~~~el~~~----l 231 (646)
|||||.+|......+...+|++++|+|++++.+.++...+..+...+.|+++|+||+|+.... .+...+++.+. +
T Consensus 74 DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~ 153 (192)
T cd01889 74 DCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTL 153 (192)
T ss_pred ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHH
Confidence 999998887777777888999999999999988888777766666789999999999987432 33333444332 2
Q ss_pred ---CCCcccccccccccccchhHHHHHHHHhCCCCC
Q 043429 232 ---GLDCTNAILCSAKEGIGINEILNAIVKRIPPPS 264 (646)
Q Consensus 232 ---~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P~ 264 (646)
+....+++++||++|.|+++|++++.+++|+|.
T Consensus 154 ~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~~ 189 (192)
T cd01889 154 EKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLPL 189 (192)
T ss_pred HhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccccc
Confidence 234457999999999999999999999999985
No 62
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.91 E-value=5.6e-24 Score=213.78 Aligned_cols=160 Identities=31% Similarity=0.445 Sum_probs=131.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCcccccc----------cc------ccccccccccccceeeeeeEEEEEEEecCCC
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREM----------KE------QFLDNMDLERERGITIKLQAARMRYVFENEP 150 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~----------~~------~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~ 150 (646)
||+|+||+|||||||+++|++.+|.+.+.+. +. +++|..+.|++||+|++.....+.+. +
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~----~ 76 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE----K 76 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC----C
Confidence 6899999999999999999999998876441 12 48999999999999999998888876 8
Q ss_pred eEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCC-------CccHhhHHHHHHHHHcC-CCeEEEEeccCCCCC----
Q 043429 151 FCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQ-------GVEAQTLANVYLALENN-LEIIPVLNKIDLPGA---- 218 (646)
Q Consensus 151 ~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~-------g~~~qt~~~~~~~~~~~-~piIvViNKiDl~~~---- 218 (646)
+.+++||||||.+|...+..+++.+|++|+|+|+++ +...++...+..+...+ .|+++|+||+|+..+
T Consensus 77 ~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 77 YRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred eEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccH
Confidence 999999999999999999999999999999999998 45668888887776666 578999999999743
Q ss_pred -CchHHHHHHHHH---hCCC--cccccccccccccchh
Q 043429 219 -EPSRVAREIEEV---IGLD--CTNAILCSAKEGIGIN 250 (646)
Q Consensus 219 -~~~~~~~el~~~---l~~~--~~~i~~vSAk~g~GV~ 250 (646)
..++..+++.+. ++.. ..+++++||++|.|++
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 133444555433 3333 3579999999999986
No 63
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.91 E-value=1.7e-23 Score=216.68 Aligned_cols=142 Identities=32% Similarity=0.418 Sum_probs=126.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccc---cccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKRE---MKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~---~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
||+|+||+|+|||||+++|+..++.+.+.+ .+.+++|..+.++++++|+......+.|. ++.+++|||||+.+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~----~~~i~liDtPG~~~ 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK----GHKINLIDTPGYAD 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC----CEEEEEEECcCHHH
Confidence 689999999999999999999877765543 35678899999999999999888888886 79999999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhC
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIG 232 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~ 232 (646)
|..++.++++.+|++++|+|++.+...++...|......++|+++|+||+|+.+++..+..+++++.++
T Consensus 77 f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~ 145 (268)
T cd04170 77 FVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFG 145 (268)
T ss_pred HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999888888999999999999998877777777776654
No 64
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=7.3e-23 Score=220.93 Aligned_cols=235 Identities=26% Similarity=0.329 Sum_probs=186.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCcccccc----------------ccccccccccccccceeeeeeEEEEEEE
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREM----------------KEQFLDNMDLERERGITIKLQAARMRYV 145 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~----------------~~~~~d~~~~e~e~giTi~~~~~~~~~~ 145 (646)
+....+++++||+++|||||+.+|++..|.+..+.+ ..|++|....||+||+|.+.....++-.
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 345679999999999999999999999998887643 2689999999999999999888776643
Q ss_pred ecCCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCc-------cHhhHHHHHHHHHcCCC-eEEEEeccCCCC
Q 043429 146 FENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV-------EAQTLANVYLALENNLE-IIPVLNKIDLPG 217 (646)
Q Consensus 146 ~~~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~-------~~qt~~~~~~~~~~~~p-iIvViNKiDl~~ 217 (646)
.+.++|+|+|||.||..++......+|+++||||++.+. ..||.++...+...|+. +||++||+|+.+
T Consensus 254 ----~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 254 ----SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVS 329 (603)
T ss_pred ----ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccC
Confidence 789999999999999999999999999999999999763 45899999998888887 999999999988
Q ss_pred CCc---hHHHHHHHHHh----CCCcc--cccccccccccchhH---------------HHHHHHHhCCCCCCCCCCCceE
Q 043429 218 AEP---SRVAREIEEVI----GLDCT--NAILCSAKEGIGINE---------------ILNAIVKRIPPPSNTAGCPFRA 273 (646)
Q Consensus 218 ~~~---~~~~~el~~~l----~~~~~--~i~~vSAk~g~GV~e---------------Ll~~I~~~ip~P~~~~~~pl~~ 273 (646)
.+. +++...+...+ |+... .+++||+.+|+|+.. ||+.|-. +.+|.++.+.||++
T Consensus 330 Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~~~~~kPl~l 408 (603)
T KOG0458|consen 330 WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPERPIDKPLRL 408 (603)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhh-ccCCCCcccCCeEE
Confidence 764 33333443333 55443 689999999999842 5666655 77788888999999
Q ss_pred EEEEEEeecc-----------------ceEEecCCCceEEc--------------cce-eeEEEeecccccccccCCeee
Q 043429 274 LIFDRIIMLM-----------------KLECYPPIKCKWKN--------------FKQ-VGYLSASIRSVADARVGDTIT 321 (646)
Q Consensus 274 ~vf~~~~d~~-----------------~~i~~~~~~~~~~v--------------aG~-Vg~i~~~i~~~~~~~~GDtl~ 321 (646)
.|.|++-.+- +++++|++.....| ||| |-.-+.++ ....+++||+++
T Consensus 409 tIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~~~~~~~a~AGD~Vsl~L~~i-~~n~v~~g~i~~ 487 (603)
T KOG0458|consen 409 TISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSNDEPKTWAVAGDNVSLKLPGI-LPNLVQVGDIAD 487 (603)
T ss_pred EhhheeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeecCCCcceeEeeCCEEEEecCcc-Chhhcccceeee
Confidence 9998877664 78888888777665 666 32222232 456677888877
Q ss_pred e
Q 043429 322 H 322 (646)
Q Consensus 322 ~ 322 (646)
.
T Consensus 488 ~ 488 (603)
T KOG0458|consen 488 S 488 (603)
T ss_pred c
Confidence 3
No 65
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.4e-23 Score=197.33 Aligned_cols=160 Identities=18% Similarity=0.219 Sum_probs=136.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH 161 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~ 161 (646)
.+++.||.++|++|+|||+|+.||... .+.. ....||+.++....+..+++..++++|||+|+
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~---------------~f~e--~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQ 68 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDD---------------TFTE--SYISTIGVDFKIRTVELDGKTIKLQIWDTAGQ 68 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccC---------------Ccch--hhcceeeeEEEEEEeeecceEEEEEeeecccc
Confidence 356789999999999999999999662 1222 34558888888888888999999999999999
Q ss_pred ccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc----CCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCc
Q 043429 162 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDC 235 (646)
Q Consensus 162 ~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~----~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~ 235 (646)
++|...+..+++.|+|+|+|+|.++..+++.+..|....+. ++|.++|+||+|+.... ..+..+++.+.++.+.
T Consensus 69 ERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~ 148 (205)
T KOG0084|consen 69 ERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPI 148 (205)
T ss_pred HHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999988774 78999999999997654 3444566777776653
Q ss_pred ccccccccccccchhHHHHHHHHhC
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
++++|||++.||++.|..|...+
T Consensus 149 --f~ETSAK~~~NVe~~F~~la~~l 171 (205)
T KOG0084|consen 149 --FLETSAKDSTNVEDAFLTLAKEL 171 (205)
T ss_pred --eeecccCCccCHHHHHHHHHHHH
Confidence 89999999999999999988755
No 66
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=9.5e-23 Score=220.08 Aligned_cols=205 Identities=30% Similarity=0.390 Sum_probs=163.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
.+-|+|+||.+||||||++.+-.. . .......|||.....+.+.+... ..-.++|+|||||+-|
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t-~--------------Va~~EaGGITQhIGA~~v~~~~~-~~~~itFiDTPGHeAF 68 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKT-N--------------VAAGEAGGITQHIGAYQVPLDVI-KIPGITFIDTPGHEAF 68 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcC-c--------------cccccCCceeeEeeeEEEEeccC-CCceEEEEcCCcHHHH
Confidence 357999999999999999999652 1 11234578999888887776421 2468999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCc------ccc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDC------TNA 238 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~------~~i 238 (646)
..+..|....+|.++||||+.+|+.+||.+.+..+...++|+++++||+|+++++++.+..++.+. |+.. ..+
T Consensus 69 t~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~-gl~~E~~gg~v~~ 147 (509)
T COG0532 69 TAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY-GLVPEEWGGDVIF 147 (509)
T ss_pred HHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHc-CCCHhhcCCceEE
Confidence 999999999999999999999999999999999999999999999999999999999888888654 4433 358
Q ss_pred cccccccccchhHHHHHHHHhC--CCCCCCCCCCceEEEEEEEeeccceEEecCCCceEEccceeeEEEeeccccccccc
Q 043429 239 ILCSAKEGIGINEILNAIVKRI--PPPSNTAGCPFRALIFDRIIMLMKLECYPPIKCKWKNFKQVGYLSASIRSVADARV 316 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~i--p~P~~~~~~pl~~~vf~~~~d~~~~i~~~~~~~~~~vaG~Vg~i~~~i~~~~~~~~ 316 (646)
+++||++|+|+++|++.|.-.. ..-...++.+.++.+..+.-|+ | .|.++..+-.-+.++.
T Consensus 148 VpvSA~tg~Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dk----------------G-~G~vatviv~~GtL~~ 210 (509)
T COG0532 148 VPVSAKTGEGIDELLELILLLAEVLELKANPEGPARGTVIEVKLDK----------------G-LGPVATVIVQDGTLKK 210 (509)
T ss_pred EEeeccCCCCHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEecc----------------C-CCceEEEEEecCeEec
Confidence 9999999999999999986432 2445567788999998876663 2 2333333334466788
Q ss_pred CCeeeec
Q 043429 317 GDTITHF 323 (646)
Q Consensus 317 GDtl~~~ 323 (646)
||+|...
T Consensus 211 GD~iv~g 217 (509)
T COG0532 211 GDIIVAG 217 (509)
T ss_pred CCEEEEc
Confidence 8888654
No 67
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.89 E-value=6.5e-23 Score=203.63 Aligned_cols=167 Identities=31% Similarity=0.354 Sum_probs=131.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEec------------------
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFE------------------ 147 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~------------------ 147 (646)
+||+++||.|+|||||+++|.. ...|....|.++|+|+........|...
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~------------~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSG------------VWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSP 68 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhC------------CCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccc
Confidence 4899999999999999999943 2246667788999999888777766400
Q ss_pred -------C----CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCC-ccHhhHHHHHHHHHcCC-CeEEEEeccC
Q 043429 148 -------N----EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG-VEAQTLANVYLALENNL-EIIPVLNKID 214 (646)
Q Consensus 148 -------~----~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g-~~~qt~~~~~~~~~~~~-piIvViNKiD 214 (646)
+ ....++|||||||.+|...+.++++.+|++++|+|++++ ...++...+..+...++ |+++|+||+|
T Consensus 69 ~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~D 148 (203)
T cd01888 69 ECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKID 148 (203)
T ss_pred cccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchh
Confidence 0 127899999999999999999999999999999999984 56677777766665665 6899999999
Q ss_pred CCCC-CchHHHHHHHHHhC---CCcccccccccccccchhHHHHHHHHhCCCCC
Q 043429 215 LPGA-EPSRVAREIEEVIG---LDCTNAILCSAKEGIGINEILNAIVKRIPPPS 264 (646)
Q Consensus 215 l~~~-~~~~~~~el~~~l~---~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P~ 264 (646)
+.+. ......+++.+.+. ....+++++||++|.|+++|+++|.+.+|.|.
T Consensus 149 l~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 149 LVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred ccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence 9753 23334455555442 22457999999999999999999999998874
No 68
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=7.3e-23 Score=193.37 Aligned_cols=161 Identities=22% Similarity=0.235 Sum_probs=135.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
-.|++++|..++|||||+.|+... +|-+ ..-.||+..+.+..+..++..+++.||||+|+++|
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~-----------~F~e------~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy 67 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKD-----------QFHE------NIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERY 67 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhC-----------cccc------ccccccccEEEEEEEEeCCcEEEEEEEEcCCcccc
Confidence 358999999999999999999762 2212 12348999999998988888899999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC----eEEEEeccCCCCCC--chHHHHHHHHHhCCCcccc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE----IIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p----iIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~i 238 (646)
.....-|+++++++|+|+|+++..+++..+.|...+....| +.+|+||+||...+ ..+..+.+.+..|+. +
T Consensus 68 ~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll---~ 144 (200)
T KOG0092|consen 68 HSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLL---F 144 (200)
T ss_pred cccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCE---E
Confidence 99999999999999999999999999999999999887554 67799999997732 334445666666654 8
Q ss_pred cccccccccchhHHHHHHHHhCCCCCC
Q 043429 239 ILCSAKEGIGINEILNAIVKRIPPPSN 265 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~ip~P~~ 265 (646)
+++|||+|.||+++|..|.+.+|....
T Consensus 145 ~ETSAKTg~Nv~~if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 145 FETSAKTGENVNEIFQAIAEKLPCSDP 171 (200)
T ss_pred EEEecccccCHHHHHHHHHHhccCccc
Confidence 999999999999999999999987643
No 69
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.89 E-value=2e-22 Score=201.60 Aligned_cols=178 Identities=32% Similarity=0.485 Sum_probs=141.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCcccc----ccccccccccccccccceeeeeeEEEEEEEe-cCCCeEEEEEeCCC
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKR----EMKEQFLDNMDLERERGITIKLQAARMRYVF-ENEPFCLNLIDTPG 160 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~----~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~-~~~~~~l~liDTPG 160 (646)
|||+|+||+|||||||+++|+..++.+... ....+++|..+.|+++|+|+......+.+.. ++..+.+++|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 689999999999999999999988776532 2345678888899999999998888877763 34568999999999
Q ss_pred CccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCC-----------CchHHHHHHHH
Q 043429 161 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGA-----------EPSRVAREIEE 229 (646)
Q Consensus 161 ~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~-----------~~~~~~~el~~ 229 (646)
|.+|...+..++..+|++++|+|++++.+.++...+..+...++|+++|+||+|+... ...+..+++..
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n~ 160 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNN 160 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888877777777778999999999997521 11112222222
Q ss_pred H---hCCC--------cccccccccccccchh--------HHHHHHHHhCCCC
Q 043429 230 V---IGLD--------CTNAILCSAKEGIGIN--------EILNAIVKRIPPP 263 (646)
Q Consensus 230 ~---l~~~--------~~~i~~vSAk~g~GV~--------eLl~~I~~~ip~P 263 (646)
. ++.+ ...+++.||+.|.++. +|++.|.+.+|+|
T Consensus 161 ~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 213 (213)
T cd04167 161 IIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIPSP 213 (213)
T ss_pred HHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCCCC
Confidence 2 2221 1237789999998887 9999999999987
No 70
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.88 E-value=7e-22 Score=191.96 Aligned_cols=173 Identities=47% Similarity=0.738 Sum_probs=140.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccc-cccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKRE-MKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~-~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
+|+|+|.+|+|||||+++|+.......... ....+++....+..+++|+........+. ...+++|||||+.++.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~liDtpG~~~~~ 76 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP----DRRVNFIDTPGHEDFS 76 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC----CEEEEEEeCCCcHHHH
Confidence 589999999999999999998765543322 23355666777788888888766666555 7899999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCC-CCchHHHHHHHHHhCC-----------
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPG-AEPSRVAREIEEVIGL----------- 233 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~-~~~~~~~~el~~~l~~----------- 233 (646)
..+..+++.+|++++|+|++++...+....+......++|+++|+||+|+.. .......+++.+.++.
T Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (189)
T cd00881 77 SEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT 156 (189)
T ss_pred HHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence 9999999999999999999999888877777777778999999999999976 3444445555555432
Q ss_pred ---CcccccccccccccchhHHHHHHHHhCCCC
Q 043429 234 ---DCTNAILCSAKEGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 234 ---~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P 263 (646)
...+++++||++|.|++++++++.+.+|+|
T Consensus 157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~~ 189 (189)
T cd00881 157 RNGLLVPIVPGSALTGIGVEELLEAIVEHLPPP 189 (189)
T ss_pred ccCCcceEEEEecccCcCHHHHHHHHHhhCCCC
Confidence 245799999999999999999999999875
No 71
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=4.8e-22 Score=209.55 Aligned_cols=220 Identities=29% Similarity=0.347 Sum_probs=186.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
.|+..||.+||||||+..+.+ ...|..+.+++||+|++...+..... ++.+.|||.|||.+|..
T Consensus 2 ii~t~GhidHgkT~L~~altg------------~~~d~l~EekKRG~TiDlg~~y~~~~----d~~~~fIDvpgh~~~i~ 65 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTG------------GVTDRLPEEKKRGITIDLGFYYRKLE----DGVMGFIDVPGHPDFIS 65 (447)
T ss_pred eEEEeeeeeccchhhhhhhcc------------cccccchhhhhcCceEeeeeEeccCC----CCceEEeeCCCcHHHHH
Confidence 478899999999999999854 23477889999999999987665444 67999999999999999
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCC-CCchHHHHHHHHHhCCCcccccccccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPG-AEPSRVAREIEEVIGLDCTNAILCSAK 244 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~-~~~~~~~~el~~~l~~~~~~i~~vSAk 244 (646)
.+..++...|.++||||+++|...||.+++......+++ .++|+||+|+.+ ++.++..+++...+.+...++|.+|++
T Consensus 66 ~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~ 145 (447)
T COG3276 66 NLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAK 145 (447)
T ss_pred HHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccc
Confidence 999999999999999999999999999999888888888 599999999875 345556666766666777889999999
Q ss_pred cccchhHHHHHHHHhCCCCCCCCCCCceEEEEEEEeecc------------------ceEEecCCCceEEc---------
Q 043429 245 EGIGINEILNAIVKRIPPPSNTAGCPFRALIFDRIIMLM------------------KLECYPPIKCKWKN--------- 297 (646)
Q Consensus 245 ~g~GV~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~~d~~------------------~~i~~~~~~~~~~v--------- 297 (646)
+|+||++|.+.|.+....+..+.+.||+..| |..|.-. |++++.+.++..+|
T Consensus 146 ~g~GI~~Lk~~l~~L~~~~e~d~~~~fri~I-DraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq~~d~d 224 (447)
T COG3276 146 TGRGIEELKNELIDLLEEIERDEQKPFRIAI-DRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPINKEVRVRSIQAHDVD 224 (447)
T ss_pred cCCCHHHHHHHHHHhhhhhhhccCCceEEEE-eeEEEeccccEEEEeEEeeeeEEECCEEEEecCCCeEEEEeeeecCcc
Confidence 9999999999998877667788899998665 5444432 89999999999888
Q ss_pred -----cce-eeEEEeecccccccccCCeeeecC
Q 043429 298 -----FKQ-VGYLSASIRSVADARVGDTITHFN 324 (646)
Q Consensus 298 -----aG~-Vg~i~~~i~~~~~~~~GDtl~~~~ 324 (646)
||+ ||..+.|. ..+++..||.|....
T Consensus 225 ~~~a~AG~RVgLaL~~v-~~eei~RG~~L~~~~ 256 (447)
T COG3276 225 VEEAKAGQRVGLALKGV-EKEEIERGDWLLKPE 256 (447)
T ss_pred hhhccccceeeeecCCC-CHHHhhcccEeccCC
Confidence 998 88877777 678999999998654
No 72
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=3e-22 Score=202.84 Aligned_cols=235 Identities=28% Similarity=0.327 Sum_probs=175.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccc-cccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQK-REMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~-~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
--||+-|||+|||||||..++......... ....-.-.|.-++|+.|||||.+. +++|... ...+.-+|+|||.|
T Consensus 54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~a--HveYeTa--~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAA--HVEYETA--KRHYAHTDCPGHAD 129 (449)
T ss_pred cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeee--eeeeecc--ccccccCCCCchHH
Confidence 359999999999999999988652211100 011223368888999999999764 4555433 45567899999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCC-CCchH----HHHHHHHHhCCCc--
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPG-AEPSR----VAREIEEVIGLDC-- 235 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~-~~~~~----~~~el~~~l~~~~-- 235 (646)
|...+....+..|++||||.+++|..+||.+++.++.+-+++ +++++||.|+.+ .+.-+ .+.++...+|++.
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~ 209 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDN 209 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999999999999999999999 888999999873 33212 2334455567665
Q ss_pred cccccccccc---c-------cchhHHHHHHHHhCCCCCCCCCCCceEEEEEEEeecc-----------------ceEEe
Q 043429 236 TNAILCSAKE---G-------IGINEILNAIVKRIPPPSNTAGCPFRALIFDRIIMLM-----------------KLECY 288 (646)
Q Consensus 236 ~~i~~vSAk~---g-------~GV~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~~d~~-----------------~~i~~ 288 (646)
.|++..||.. | ..|.+|++++-.++|.|..+.+.||.+.|-+.+.-+. +++-+
T Consensus 210 ~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~e~ei 289 (449)
T KOG0460|consen 210 TPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEI 289 (449)
T ss_pred CCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccCCCceeehhheeeecCCceEEEEEEeecccccCCEEEE
Confidence 4788888763 3 1378899999999999999999999998877666554 33333
Q ss_pred cCCCce--EEc--------------cce-eeEEEeecccccccccCCeeeecC
Q 043429 289 PPIKCK--WKN--------------FKQ-VGYLSASIRSVADARVGDTITHFN 324 (646)
Q Consensus 289 ~~~~~~--~~v--------------aG~-Vg~i~~~i~~~~~~~~GDtl~~~~ 324 (646)
...++. +.| ||| +|.++.|++ ..+++.|-.++.++
T Consensus 290 vG~~~~lkttvtgiemF~K~ld~a~AGDn~G~LlRGik-~~dvkRGmvl~~pG 341 (449)
T KOG0460|consen 290 VGHNKTLKTTVTGIEMFRKSLDEAQAGDNLGALLRGIK-REDVKRGMVLAKPG 341 (449)
T ss_pred eccCcceeeEeehHHHHHHHHHhcccccceehhhhcCC-HHHHhcccEEecCC
Confidence 322222 112 887 888888885 57889999887654
No 73
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=8.3e-22 Score=210.33 Aligned_cols=181 Identities=29% Similarity=0.382 Sum_probs=153.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
+.+-|.|+||+|||||||++.|-...-+ .....|||.....+.+... .+..++|+|||||..
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VA---------------A~E~GGITQhIGAF~V~~p---~G~~iTFLDTPGHaA 213 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVA---------------AGEAGGITQHIGAFTVTLP---SGKSITFLDTPGHAA 213 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCcee---------------hhhcCCccceeceEEEecC---CCCEEEEecCCcHHH
Confidence 4578999999999999999999662211 2335789998888877766 358899999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCC------ccc
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLD------CTN 237 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~------~~~ 237 (646)
|..+..|....+|.++|||.+.+|+.+||.+.+..+...++|+++.+||||.++++++.+++++... |+. ..+
T Consensus 214 F~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~-gi~~E~~GGdVQ 292 (683)
T KOG1145|consen 214 FSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQ-GIVVEDLGGDVQ 292 (683)
T ss_pred HHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHc-CccHHHcCCcee
Confidence 9999999999999999999999999999999999999999999999999999999999999888643 322 136
Q ss_pred ccccccccccchhHHHHHHHHh--CCCCCCCCCCCceEEEEEEEeecc
Q 043429 238 AILCSAKEGIGINEILNAIVKR--IPPPSNTAGCPFRALIFDRIIMLM 283 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~--ip~P~~~~~~pl~~~vf~~~~d~~ 283 (646)
++++||++|.|++.|.++++-. +-.-..++..|+.+.|..+..|+.
T Consensus 293 vipiSAl~g~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg 340 (683)
T KOG1145|consen 293 VIPISALTGENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKG 340 (683)
T ss_pred EEEeecccCCChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCC
Confidence 8999999999999999988653 334456788999999999988854
No 74
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.1e-21 Score=186.86 Aligned_cols=163 Identities=18% Similarity=0.181 Sum_probs=139.8
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCC
Q 043429 81 PASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPG 160 (646)
Q Consensus 81 ~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG 160 (646)
+.+...+|+++|++|||||+++.++...+.. .....|++.++.......++....+++|||+|
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~-----------------~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaG 70 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFN-----------------TSFISTIGIDFKIKTIELDGKKIKLQIWDTAG 70 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCc-----------------CCccceEEEEEEEEEEEeCCeEEEEEEEEccc
Confidence 4567889999999999999999999873321 22334777777777777888899999999999
Q ss_pred CccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc----CCCeEEEEeccCCCCC--CchHHHHHHHHHhCCC
Q 043429 161 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPGA--EPSRVAREIEEVIGLD 234 (646)
Q Consensus 161 ~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~----~~piIvViNKiDl~~~--~~~~~~~el~~~l~~~ 234 (646)
+++|......|++.|++++||||.++..++..+..|...++. ++|+++|+||+|+... ...+..+.++..+|..
T Consensus 71 Qerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~ 150 (207)
T KOG0078|consen 71 QERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIK 150 (207)
T ss_pred chhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCe
Confidence 999999999999999999999999999999999999988774 6889999999999773 3456677888888876
Q ss_pred cccccccccccccchhHHHHHHHHhCCCC
Q 043429 235 CTNAILCSAKEGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 235 ~~~i~~vSAk~g~GV~eLl~~I~~~ip~P 263 (646)
++++|||+|.||++.|-.+.+.+...
T Consensus 151 ---F~EtSAk~~~NI~eaF~~La~~i~~k 176 (207)
T KOG0078|consen 151 ---FFETSAKTNFNIEEAFLSLARDILQK 176 (207)
T ss_pred ---EEEccccCCCCHHHHHHHHHHHHHhh
Confidence 89999999999999999998877543
No 75
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.87 E-value=2.1e-21 Score=185.55 Aligned_cols=157 Identities=19% Similarity=0.244 Sum_probs=117.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
..+||+++|++|+|||||+++|+... . .+ +...|+........+..++..+.+++|||||+.+
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~--~---------~~------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~ 64 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGT--F---------SE------RQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQER 64 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCC--C---------cc------cCCCccceEEEEEEEEECCEEEEEEEEECCChHH
Confidence 35899999999999999999997621 1 11 1112322222222233334457899999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc----CCCeEEEEeccCCCCCCc--hHHHHHHHHHhCCCccc
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPGAEP--SRVAREIEEVIGLDCTN 237 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~----~~piIvViNKiDl~~~~~--~~~~~el~~~l~~~~~~ 237 (646)
|...+..+++.+|++++|+|+++..+++.+..|...+.. ++|+++|+||+|+...+. .+...++.+.++. ..
T Consensus 65 ~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~ 142 (165)
T cd01864 65 FRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGM--LA 142 (165)
T ss_pred HHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC--cE
Confidence 999899999999999999999999998888888776643 688999999999875432 2333455554443 35
Q ss_pred ccccccccccchhHHHHHHHHh
Q 043429 238 AILCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~ 259 (646)
++++||++|.|++++++++.+.
T Consensus 143 ~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 143 VLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999865
No 76
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.87 E-value=2.6e-21 Score=183.63 Aligned_cols=157 Identities=31% Similarity=0.370 Sum_probs=118.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
+|+++|++|+|||||+++|.... .+....+..+++|+......+.+. .+..+++|||||+.+|..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~------------~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~~DtpG~~~~~~ 66 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE------------TDRLPEEKKRGITIDLGFAYLDLP---SGKRLGFIDVPGHEKFIK 66 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc------------cccchhhhccCceEEeeeEEEEec---CCcEEEEEECCChHHHHH
Confidence 78999999999999999997521 122233456778887766555443 156899999999999988
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCC-CeEEEEeccCCCCCC-chHHHHHHHHHhCC---Cccccccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNL-EIIPVLNKIDLPGAE-PSRVAREIEEVIGL---DCTNAILC 241 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~-piIvViNKiDl~~~~-~~~~~~el~~~l~~---~~~~i~~v 241 (646)
.+..+++.+|++++|+|++++...++...+......+. |+++|+||+|+.+.. .....+++.+.+.. ...+++++
T Consensus 67 ~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (164)
T cd04171 67 NMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPV 146 (164)
T ss_pred HHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEE
Confidence 88888999999999999998777777666555544565 899999999997542 22233444444422 34579999
Q ss_pred ccccccchhHHHHHHHH
Q 043429 242 SAKEGIGINEILNAIVK 258 (646)
Q Consensus 242 SAk~g~GV~eLl~~I~~ 258 (646)
||++|.|++++++.+.+
T Consensus 147 Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 147 SAVTGEGIEELKEYLDE 163 (164)
T ss_pred eCCCCcCHHHHHHHHhh
Confidence 99999999999998754
No 77
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=3.5e-21 Score=181.89 Aligned_cols=162 Identities=17% Similarity=0.218 Sum_probs=135.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
+..|++++|+.++|||||+.|+++.. ..+..+.||+.++........+..+.++||||+|+++
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~-----------------fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQER 83 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDK-----------------FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 83 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhh-----------------hcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHH
Confidence 34699999999999999999999832 2334556999998888888888999999999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc-----CCCeEEEEeccCCCCCCchH--HHHHHHHHhCCCcc
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPGAEPSR--VAREIEEVIGLDCT 236 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~-----~~piIvViNKiDl~~~~~~~--~~~el~~~l~~~~~ 236 (646)
|......|++.+.++|+|+|.++..+++....|..-... ++-+++|+||.||.+.+... ..+...+.++.
T Consensus 84 FrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a--- 160 (221)
T KOG0094|consen 84 FRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNA--- 160 (221)
T ss_pred HhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCc---
Confidence 999999999999999999999999999999888876653 35589999999998764322 22334444544
Q ss_pred cccccccccccchhHHHHHHHHhCCCCCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIPPPSN 265 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip~P~~ 265 (646)
.++++||+.|.||.++|..|...+|.+..
T Consensus 161 ~f~etsak~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 161 EFIETSAKAGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred EEEEecccCCCCHHHHHHHHHHhccCccc
Confidence 58999999999999999999999988754
No 78
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.86 E-value=2.8e-21 Score=205.71 Aligned_cols=222 Identities=21% Similarity=0.226 Sum_probs=175.2
Q ss_pred cCCCCCCEEEeeecccccccCCCcCccchhhcccccccccccccccccceeEeecCCCCCchHHhhhhhccc--cccCCC
Q 043429 5 LSSSPAPVLSIKHQTFATLKKPHISSLSHFLSKSHRRCNYSLSISKHSCIFRVSCQSQATDAELATRVGQDR--LLKVPA 82 (646)
Q Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~~s~~~~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~ 82 (646)
|-.++.|++.+-++.+.. . .....+.+++++...+.++|+.|+.|...+.+.+.... ....+.
T Consensus 108 Lr~~~kpviLvvNK~D~~----~-----------~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~ 172 (444)
T COG1160 108 LRRSKKPVILVVNKIDNL----K-----------AEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLPPDEEEEE 172 (444)
T ss_pred HHhcCCCEEEEEEcccCc----h-----------hhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcCCcccccc
Confidence 445678888887777743 0 01123457888999999999999999999998886653 111222
Q ss_pred C---CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCC
Q 043429 83 S---NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTP 159 (646)
Q Consensus 83 ~---~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTP 159 (646)
+ ...+|+|+|.||+|||||+|+|+.....+ ++...|+|.++-...++|. +..+.++||+
T Consensus 173 ~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~I--------------v~~~aGTTRD~I~~~~e~~----~~~~~liDTA 234 (444)
T COG1160 173 EEETDPIKIAIIGRPNVGKSSLINAILGEERVI--------------VSDIAGTTRDSIDIEFERD----GRKYVLIDTA 234 (444)
T ss_pred cccCCceEEEEEeCCCCCchHHHHHhccCceEE--------------ecCCCCccccceeeeEEEC----CeEEEEEECC
Confidence 2 46899999999999999999999864444 4668899999988887776 7889999999
Q ss_pred CCcc----------ch-hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCC---CchHHHH
Q 043429 160 GHVD----------FS-YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGA---EPSRVAR 225 (646)
Q Consensus 160 G~~d----------f~-~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~---~~~~~~~ 225 (646)
|... |+ .....++..||.+++|+||++|.+.|+......+.+.+.++++|+||||+... ..++..+
T Consensus 235 GiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~ 314 (444)
T COG1160 235 GIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKK 314 (444)
T ss_pred CCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHH
Confidence 9764 22 12345778899999999999999999999999999999999999999998654 3345555
Q ss_pred HHHHHhC-CCcccccccccccccchhHHHHHHHHh
Q 043429 226 EIEEVIG-LDCTNAILCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 226 el~~~l~-~~~~~i~~vSAk~g~GV~eLl~~I~~~ 259 (646)
++...+. +...+++++||++|.|+.++++++.+.
T Consensus 315 ~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~ 349 (444)
T COG1160 315 KLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEI 349 (444)
T ss_pred HHHHHhccccCCeEEEEEecCCCChHHHHHHHHHH
Confidence 6666664 456789999999999999999998764
No 79
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.86 E-value=3.7e-21 Score=190.70 Aligned_cols=155 Identities=20% Similarity=0.252 Sum_probs=118.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
.|+++|..|+|||||+.+++... + ..+...|+........+..++..+.+++|||+|+++|..
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~-----------f------~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~ 64 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT-----------F------CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS 64 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC-----------C------CCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHH
Confidence 58999999999999999997621 1 111223444444433444556679999999999999999
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCCc--hHHHHHHHHHhCCCcccccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAEP--SRVAREIEEVIGLDCTNAIL 240 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~~--~~~~~el~~~l~~~~~~i~~ 240 (646)
.+..+++.+|++|+|+|+++..+++.+..|...+. .++|+++|+||+|+...+. .+..+++.+.+ ....+++
T Consensus 65 l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~--~~~~~~e 142 (202)
T cd04120 65 ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQI--TGMRFCE 142 (202)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhc--CCCEEEE
Confidence 99999999999999999999999999988887665 3689999999999964321 22233444332 1235899
Q ss_pred cccccccchhHHHHHHHHhC
Q 043429 241 CSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 241 vSAk~g~GV~eLl~~I~~~i 260 (646)
+||++|.||+++|+++++.+
T Consensus 143 tSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 143 ASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred ecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998865
No 80
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.86 E-value=6.7e-21 Score=215.09 Aligned_cols=205 Identities=26% Similarity=0.299 Sum_probs=140.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecC--------------CC
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFEN--------------EP 150 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~--------------~~ 150 (646)
.+-|+|+||+|||||||+++|.+.... .....|+|.......+.+.... ..
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~---------------~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~ 68 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVA---------------KREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKI 68 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccc---------------cccCCceecccCeeEeeecccccccccccccccccccc
Confidence 357999999999999999999873211 1112334443333222221100 01
Q ss_pred eEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCC------------
Q 043429 151 FCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGA------------ 218 (646)
Q Consensus 151 ~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~------------ 218 (646)
..++|||||||++|...+.++++.+|++++|+|++++.+.++...+..+...++|+++|+||+|+...
T Consensus 69 ~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~ 148 (590)
T TIGR00491 69 PGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMES 148 (590)
T ss_pred CcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHH
Confidence 24889999999999999999999999999999999999999998888888889999999999998631
Q ss_pred ---CchHHHH-----------HHHHHhCCC------------cccccccccccccchhHHHHHHHHh----CC-CCCCCC
Q 043429 219 ---EPSRVAR-----------EIEEVIGLD------------CTNAILCSAKEGIGINEILNAIVKR----IP-PPSNTA 267 (646)
Q Consensus 219 ---~~~~~~~-----------el~~~l~~~------------~~~i~~vSAk~g~GV~eLl~~I~~~----ip-~P~~~~ 267 (646)
....+.. ++. ..|+. ..+++++||++|+|+++|+++|... ++ ....++
T Consensus 149 sak~~~~v~~~~~~~~~~lv~~l~-~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l~~~~ 227 (590)
T TIGR00491 149 FSKQEIQVQQNLDTKVYNLVIKLH-EEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEE 227 (590)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHH-hcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhhccCC
Confidence 0011111 111 11221 2478999999999999999998643 22 223456
Q ss_pred CCCceEEEEEEEeeccceEEecCCCceEEccceeeEEEeecccccccccCCeeee
Q 043429 268 GCPFRALIFDRIIMLMKLECYPPIKCKWKNFKQVGYLSASIRSVADARVGDTITH 322 (646)
Q Consensus 268 ~~pl~~~vf~~~~d~~~~i~~~~~~~~~~vaG~Vg~i~~~i~~~~~~~~GDtl~~ 322 (646)
+.|+++.|.++..+. | .|.+++++-.-+.++.||+|..
T Consensus 228 ~~~~~~~V~e~~~~~----------------G-~G~v~t~~v~~G~l~~GD~iv~ 265 (590)
T TIGR00491 228 EGPARGTILEVKEET----------------G-LGMTIDAVIYDGILRKGDTIAM 265 (590)
T ss_pred CCCeEEEEEEEEEcC----------------C-CceEEEEEEEcCEEeCCCEEEE
Confidence 789999998876552 2 3444444444455666666644
No 81
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.86 E-value=4.5e-21 Score=184.10 Aligned_cols=155 Identities=15% Similarity=0.175 Sum_probs=119.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
||+++|.+|+|||||+++++.... ......|+........+..++..+.+.+|||||+++|..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~-----------------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEF-----------------EKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG 64 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-----------------CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc
Confidence 799999999999999999986211 011123444444445555555678999999999999988
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc---CCCeEEEEeccCCCCCCchHHHHHHHHHhCCCccccccccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN---NLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSA 243 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~---~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~~vSA 243 (646)
....++..+|++|+|+|++++.+++.+..|...+.. ++|+++|+||+|+..........++.+. ...+++++||
T Consensus 65 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~e~Sa 141 (166)
T cd00877 65 LRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRK---KNLQYYEISA 141 (166)
T ss_pred ccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHH---cCCEEEEEeC
Confidence 888899999999999999999999988888776653 7999999999999744332222233322 2346999999
Q ss_pred ccccchhHHHHHHHHhCC
Q 043429 244 KEGIGINEILNAIVKRIP 261 (646)
Q Consensus 244 k~g~GV~eLl~~I~~~ip 261 (646)
++|.|++++|++|.+.+.
T Consensus 142 ~~~~~v~~~f~~l~~~~~ 159 (166)
T cd00877 142 KSNYNFEKPFLWLARKLL 159 (166)
T ss_pred CCCCChHHHHHHHHHHHH
Confidence 999999999999998764
No 82
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.85 E-value=3.9e-21 Score=193.44 Aligned_cols=175 Identities=24% Similarity=0.273 Sum_probs=133.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEe--------------------
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVF-------------------- 146 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~-------------------- 146 (646)
+|+++|+.++|||||+++|..... ....+.....++....|.++|+|.......+.+..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~-~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGEL-DNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC 79 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCc-CCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence 589999999999999999986221 11223334557778888889998754432222221
Q ss_pred cCCCeEEEEEeCCCCccchhhHhhhhh--hccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCC-CchHH
Q 043429 147 ENEPFCLNLIDTPGHVDFSYEVSRSLA--ACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGA-EPSRV 223 (646)
Q Consensus 147 ~~~~~~l~liDTPG~~df~~~~~~~l~--~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~-~~~~~ 223 (646)
...+..++++|||||.+|...+.+++. .+|++++|+|+..+.+.++...+..+...++|+++|+||+|+.+. .....
T Consensus 80 ~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~ 159 (224)
T cd04165 80 EKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQET 159 (224)
T ss_pred eeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHH
Confidence 123678999999999999998888886 689999999999999999999999999999999999999998654 34556
Q ss_pred HHHHHHHhCC--------------------------CcccccccccccccchhHHHHHHHHhCCCC
Q 043429 224 AREIEEVIGL--------------------------DCTNAILCSAKEGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 224 ~~el~~~l~~--------------------------~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P 263 (646)
.+++.+.+.. ...|+|.+||.+|.|+++|++.| ..+|+|
T Consensus 160 ~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L-~~lp~~ 224 (224)
T cd04165 160 LKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFL-NLLPLR 224 (224)
T ss_pred HHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHH-HhcCCC
Confidence 6666666541 12379999999999999998876 566653
No 83
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.85 E-value=7.8e-21 Score=181.25 Aligned_cols=154 Identities=20% Similarity=0.262 Sum_probs=115.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
+|+++|++|+|||||+++++.... .. ....|............++..+.+++|||||++.|..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~---------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 64 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGY---------------EP--QQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQT 64 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC---------------CC--CcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhh
Confidence 799999999999999999986311 11 1111222222223333445578999999999999999
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc---CCCeEEEEeccCCCCCCchHHHHHHHHHhCCCccccccccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN---NLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSA 243 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~---~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~~vSA 243 (646)
.+..+++.+|++|+|+|++++.+++....|...+.. ++|+++|+||+|+..... ....++.+..+ .+++++||
T Consensus 65 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~---~~~~~~Sa 140 (161)
T cd04124 65 MHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVT-QKKFNFAEKHN---LPLYYVSA 140 (161)
T ss_pred hhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHH-HHHHHHHHHcC---CeEEEEeC
Confidence 999999999999999999999998888888766653 789999999999854322 11223333333 36899999
Q ss_pred ccccchhHHHHHHHHhCC
Q 043429 244 KEGIGINEILNAIVKRIP 261 (646)
Q Consensus 244 k~g~GV~eLl~~I~~~ip 261 (646)
++|.|++++++.+.+.+.
T Consensus 141 ~~~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 141 ADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987654
No 84
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.85 E-value=6e-21 Score=182.31 Aligned_cols=158 Identities=20% Similarity=0.262 Sum_probs=112.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
||+++|++|+|||||+++|......... . .......|+......+.+. +..+++|||||+.+|..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~----------~-~~~~~~~t~~~~~~~~~~~----~~~~~l~Dt~G~~~~~~ 65 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKG----------L-PPSKITPTVGLNIGTIEVG----NARLKFWDLGGQESLRS 65 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccC----------C-cccccCCccccceEEEEEC----CEEEEEEECCCChhhHH
Confidence 6899999999999999999764221100 0 0112233555555555554 78999999999999999
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHH-----HcCCCeEEEEeccCCCCCCchHHHHHH-HHH---hCCCccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-----ENNLEIIPVLNKIDLPGAEPSRVAREI-EEV---IGLDCTN 237 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~-----~~~~piIvViNKiDl~~~~~~~~~~el-~~~---l~~~~~~ 237 (646)
.+..+++.+|++++|+|+++..+......|.... ..++|+++|+||+|+..........++ ... .+....+
T Consensus 66 ~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T cd04160 66 LWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCL 145 (167)
T ss_pred HHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceE
Confidence 9999999999999999999876555554444332 247999999999998765432222222 211 2233447
Q ss_pred ccccccccccchhHHHHHHHHh
Q 043429 238 AILCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~ 259 (646)
++++||++|.|+++++++|.++
T Consensus 146 ~~~~Sa~~g~gv~e~~~~l~~~ 167 (167)
T cd04160 146 VLPVSALEGTGVREGIEWLVER 167 (167)
T ss_pred EEEeeCCCCcCHHHHHHHHhcC
Confidence 9999999999999999999753
No 85
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=7.4e-21 Score=178.23 Aligned_cols=158 Identities=22% Similarity=0.218 Sum_probs=132.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
...|+.++|+.|+|||+|+.++...... .....|+...+..-.+..+++.+++++|||+||+.
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~-----------------~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~ 67 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQ-----------------PVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQES 67 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcc-----------------ccccceeeeeeceeEEEEcCceEEEEEEecCCcHH
Confidence 4578999999999999999999873221 12224777777777778888999999999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc----CCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCccc
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTN 237 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~----~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~ 237 (646)
|...+..+++.+.|+|||+|.++..++..+..|+...+. |+.+++++||+||...+ ..+..+++.+..|+.
T Consensus 68 frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLi--- 144 (216)
T KOG0098|consen 68 FRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLI--- 144 (216)
T ss_pred HHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCce---
Confidence 999999999999999999999999999999999876653 66799999999997644 355667788888875
Q ss_pred ccccccccccchhHHHHHHHHhCC
Q 043429 238 AILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
++++||++++||+|.|..+...+-
T Consensus 145 fmETSakt~~~VEEaF~nta~~Iy 168 (216)
T KOG0098|consen 145 FMETSAKTAENVEEAFINTAKEIY 168 (216)
T ss_pred eehhhhhhhhhHHHHHHHHHHHHH
Confidence 789999999999999988876653
No 86
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.85 E-value=1.2e-20 Score=186.81 Aligned_cols=156 Identities=22% Similarity=0.250 Sum_probs=119.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEec-CCCeEEEEEeCCCCccch
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFE-NEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~-~~~~~l~liDTPG~~df~ 165 (646)
||+++|.+|+|||||+++|+.... .. ....|+........+..+ +..+.+++|||||++.|.
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~-----------~~------~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~ 64 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIF-----------SQ------HYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG 64 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-----------CC------CCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhh
Confidence 799999999999999999986211 01 112244443333334444 567889999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH--------cCCCeEEEEeccCCCC--CCchHHHHHHHHHhCCCc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--------NNLEIIPVLNKIDLPG--AEPSRVAREIEEVIGLDC 235 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~--------~~~piIvViNKiDl~~--~~~~~~~~el~~~l~~~~ 235 (646)
..+..+++.+|++|+|+|+++..+++....|...+. .++|+++|+||+|+.. ....+..+++.+..+.
T Consensus 65 ~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-- 142 (201)
T cd04107 65 GMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGF-- 142 (201)
T ss_pred hhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCC--
Confidence 999999999999999999999999998888875543 4689999999999963 2233344555555553
Q ss_pred ccccccccccccchhHHHHHHHHhCC
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
.+++++||++|.||+++|++|++.+.
T Consensus 143 ~~~~e~Sak~~~~v~e~f~~l~~~l~ 168 (201)
T cd04107 143 IGWFETSAKEGINIEEAMRFLVKNIL 168 (201)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999998764
No 87
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.85 E-value=1.1e-20 Score=185.43 Aligned_cols=158 Identities=16% Similarity=0.193 Sum_probs=120.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
...||+++|..|+|||||+.++..... ..+... |+...........++..+.+++|||||+.+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~---------------~~~~~~--t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~ 67 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGST---------------ESPYGY--NMGIDYKTTTILLDGRRVKLQLWDTSGQGR 67 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC---------------CCCCCC--cceeEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 467999999999999999999976211 111111 222222222233445578999999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH---cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcccc
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~---~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~i 238 (646)
|...+..+++.+|++|||+|.++..+++.+..|...+. .+.|+++|+||+|+.... ..+..+++.+..+. ++
T Consensus 68 ~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~---~~ 144 (189)
T cd04121 68 FCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGM---TF 144 (189)
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCC---EE
Confidence 99999999999999999999999999999998887765 368999999999996532 23344555555554 59
Q ss_pred cccccccccchhHHHHHHHHhCC
Q 043429 239 ILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+++||++|.||+++|++|++.+.
T Consensus 145 ~e~SAk~g~~V~~~F~~l~~~i~ 167 (189)
T cd04121 145 FEVSPLCNFNITESFTELARIVL 167 (189)
T ss_pred EEecCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999997653
No 88
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.85 E-value=1e-20 Score=180.99 Aligned_cols=156 Identities=24% Similarity=0.304 Sum_probs=118.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
+.||+++|++|+|||||+++|+... +.. ....|+........+..++..+.+++|||||+..|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~-----------~~~------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 64 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKK-----------FMA------DCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERF 64 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC-----------CCC------CCCcccceeEEEEEEEECCEEEEEEEEECCCcHHH
Confidence 3689999999999999999997621 111 11113333333333444555788999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCCc--hHHHHHHHHHhCCCcccc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAEP--SRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~~--~~~~~el~~~l~~~~~~i 238 (646)
...+..+++.+|++|+|+|+++..+++.+..|..... .+.|+++|+||+|+..... .+...++.+..+. ++
T Consensus 65 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~ 141 (166)
T cd04122 65 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGL---LF 141 (166)
T ss_pred HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCC---EE
Confidence 9999999999999999999999999999888876553 3578999999999976432 2333444444443 68
Q ss_pred cccccccccchhHHHHHHHHhC
Q 043429 239 ILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++||++|.|++++|+.+++.+
T Consensus 142 ~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 142 LECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998654
No 89
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.85 E-value=1.3e-20 Score=182.93 Aligned_cols=158 Identities=18% Similarity=0.204 Sum_probs=120.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.||+++|+.|+|||||+.+++... +.+ +...|+.... ...+..++..+.+++|||+|+++|.
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~-----------f~~------~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~ 63 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK-----------FPT------DYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYN 63 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC-----------CCC------CCCCcceeee-EEEEEECCEEEEEEEEECCCCcccc
Confidence 589999999999999999998621 111 1122443322 2334455667999999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhH-HHHHHHHH---cCCCeEEEEeccCCCCCC------------chHHHHHHHH
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE---NNLEIIPVLNKIDLPGAE------------PSRVAREIEE 229 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~-~~~~~~~~---~~~piIvViNKiDl~~~~------------~~~~~~el~~ 229 (646)
.....+++.+|++|+|+|.++..+++.+ ..|...+. .+.|+++|+||+|+.+.. ..+..+++.+
T Consensus 64 ~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~ 143 (176)
T cd04133 64 RLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRK 143 (176)
T ss_pred ccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999987 67876654 478999999999985431 2333445555
Q ss_pred HhCCCcccccccccccccchhHHHHHHHHhCCCC
Q 043429 230 VIGLDCTNAILCSAKEGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 230 ~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P 263 (646)
..+. .++++|||++|.||+++|+.+++.+..|
T Consensus 144 ~~~~--~~~~E~SAk~~~nV~~~F~~~~~~~~~~ 175 (176)
T cd04133 144 QIGA--AAYIECSSKTQQNVKAVFDAAIKVVLQP 175 (176)
T ss_pred HcCC--CEEEECCCCcccCHHHHHHHHHHHHhcC
Confidence 5543 2589999999999999999999866443
No 90
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.85 E-value=1.7e-20 Score=178.96 Aligned_cols=158 Identities=35% Similarity=0.454 Sum_probs=119.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
.|+|+|++|+|||||+++|+..... ....+++|.......+.+.. ..++.+++|||||+.+|..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~---------------~~~~~~~t~~~~~~~~~~~~-~~~~~~~iiDtpG~~~~~~ 65 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVA---------------AGEAGGITQHIGAFEVPAEV-LKIPGITFIDTPGHEAFTN 65 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccc---------------cccCCCeEEeeccEEEeccc-CCcceEEEEeCCCcHHHHH
Confidence 6899999999999999999763211 11234556554444433321 1367899999999999988
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhC------CCcccccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIG------LDCTNAIL 240 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~------~~~~~i~~ 240 (646)
.+..++..+|++++|+|++++...++...+......++|+++|+||+|+...+.+...+++..... ....++++
T Consensus 66 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (168)
T cd01887 66 MRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVP 145 (168)
T ss_pred HHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEE
Confidence 888899999999999999998888887777777778999999999999976654444444433211 11247999
Q ss_pred cccccccchhHHHHHHHHhC
Q 043429 241 CSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 241 vSAk~g~GV~eLl~~I~~~i 260 (646)
+||++|.|+++++++|.+..
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 146 TSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred eecccCCCHHHHHHHHHHhh
Confidence 99999999999999998753
No 91
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.85 E-value=1.7e-20 Score=212.55 Aligned_cols=184 Identities=26% Similarity=0.313 Sum_probs=128.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEec----CC----------C
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFE----NE----------P 150 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~----~~----------~ 150 (646)
.+.|+|+||+|||||||+++|.+..... ....++|.........+... +. .
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~---------------~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAA---------------KEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKI 70 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccc---------------CCCCceEEeeceeeccccccccccceecccccccccc
Confidence 4579999999999999999996522111 11122332222111111100 00 0
Q ss_pred eEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCC-CC----------
Q 043429 151 FCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPG-AE---------- 219 (646)
Q Consensus 151 ~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~-~~---------- 219 (646)
-.++|||||||++|...+.++++.+|++++|+|+++|...++...+..+...++|+++|+||+|+.. ..
T Consensus 71 ~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~ 150 (586)
T PRK04004 71 PGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLES 150 (586)
T ss_pred CCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHH
Confidence 1278999999999999999999999999999999999999999988888888999999999999852 11
Q ss_pred ----chHHHH-------HHHHH---hCCC------------cccccccccccccchhHHHHHHHHh----CCCC-CCCCC
Q 043429 220 ----PSRVAR-------EIEEV---IGLD------------CTNAILCSAKEGIGINEILNAIVKR----IPPP-SNTAG 268 (646)
Q Consensus 220 ----~~~~~~-------el~~~---l~~~------------~~~i~~vSAk~g~GV~eLl~~I~~~----ip~P-~~~~~ 268 (646)
...+.+ ++... .|+. ..+++++||++|.|+++|++.+... ++.+ ..+++
T Consensus 151 ~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~~~~~ 230 (586)
T PRK04004 151 IEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKIDVE 230 (586)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhccCCC
Confidence 011111 11111 1222 2368999999999999999888642 3332 45567
Q ss_pred CCceEEEEEEEeecc
Q 043429 269 CPFRALIFDRIIMLM 283 (646)
Q Consensus 269 ~pl~~~vf~~~~d~~ 283 (646)
.|+++.|++++.+++
T Consensus 231 ~~~~~~V~ev~~~~g 245 (586)
T PRK04004 231 GPGKGTVLEVKEERG 245 (586)
T ss_pred CCeEEEEEEEEEeCC
Confidence 899999999988865
No 92
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.85 E-value=1.5e-20 Score=180.21 Aligned_cols=157 Identities=20% Similarity=0.218 Sum_probs=117.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
...||+++|.+|+|||||++++..... .+ ....|+........+...+..+.+++|||||+.+
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f-----------~~------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~ 64 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSF-----------NP------SFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER 64 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcC-----------Cc------ccccCccceEEEEEEEECCEEEEEEEEeCCchHH
Confidence 357999999999999999999986211 01 1111222222222223344467899999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCccc
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTN 237 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~ 237 (646)
+...+..+++.+|++++|+|++++.+++.+..|...+. .+.|+++|+||+|+.+.. ..+...++.+.++. +
T Consensus 65 ~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~ 141 (167)
T cd01867 65 FRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGI---K 141 (167)
T ss_pred HHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCC---E
Confidence 99888899999999999999999999988888887655 368999999999997533 22233344444443 5
Q ss_pred ccccccccccchhHHHHHHHHhC
Q 043429 238 AILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
++++||++|.|++++|+++.+.+
T Consensus 142 ~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 142 FLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998765
No 93
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.85 E-value=2e-20 Score=177.67 Aligned_cols=153 Identities=17% Similarity=0.265 Sum_probs=116.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEec--CCCeEEEEEeCCCCccc
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFE--NEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~--~~~~~l~liDTPG~~df 164 (646)
+|+++|++|+|||||+++|+..... . + ...|+........+... +..+.+++|||||+++|
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~-----------~----~--~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 64 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFT-----------K----D--YKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF 64 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-----------C----C--CCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH
Confidence 7999999999999999999762110 0 0 11133333322233333 56789999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc---CCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCccccc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN---NLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTNAI 239 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~---~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~i~ 239 (646)
...+..+++.+|++++|+|+++..+++.+..|...... ++|+++|+||+|+.... ..+..+++.+.++. +++
T Consensus 65 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~---~~~ 141 (162)
T cd04106 65 DAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQL---PLF 141 (162)
T ss_pred HHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCC---eEE
Confidence 99999999999999999999999888888888766654 89999999999986532 22334455665665 589
Q ss_pred ccccccccchhHHHHHHHHh
Q 043429 240 LCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 240 ~vSAk~g~GV~eLl~~I~~~ 259 (646)
++||++|.|+++++++|...
T Consensus 142 ~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 142 RTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 99999999999999999764
No 94
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.85 E-value=1.7e-20 Score=178.04 Aligned_cols=154 Identities=21% Similarity=0.273 Sum_probs=114.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|.+|+|||||+++++..... ..+. .|+. .........++..+.+++|||||+++|.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-----------~~~~------~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 63 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV-----------EKYD------PTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFT 63 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-----------cccC------Cchh-hhEEEEEEECCEEEEEEEEECCCccccc
Confidence 48999999999999999999863211 1111 1211 1111222334456788999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCCc--hHHHHHHHHHhCCCcccc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAEP--SRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~~--~~~~~el~~~l~~~~~~i 238 (646)
..+..+++.+|++++|+|+++..+++....|...+. .++|+++|+||+|+..... .+...++.+.++ .++
T Consensus 64 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~ 140 (163)
T cd04136 64 AMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWG---CPF 140 (163)
T ss_pred hHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcC---CeE
Confidence 999999999999999999999888888777765543 3689999999999865332 223344555554 469
Q ss_pred cccccccccchhHHHHHHHHhC
Q 043429 239 ILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++||++|.|++++|+++++.+
T Consensus 141 ~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 141 YETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred EEecCCCCCCHHHHHHHHHHhc
Confidence 9999999999999999998754
No 95
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.85 E-value=6.1e-21 Score=178.49 Aligned_cols=162 Identities=19% Similarity=0.225 Sum_probs=134.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
....+|.|+|++|||||||++++.+. ..++....||++.+.+.++..+++.+.+++|||+|++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~-----------------kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQE 69 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNK-----------------KFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQE 69 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHH-----------------HHHHHhccccchhheeeEEEEcCeEEEEEEEecccHH
Confidence 34679999999999999999999872 2345566799999999999999999999999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc--------CCCeEEEEeccCCCCCCc----hHHHHHHHHH
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN--------NLEIIPVLNKIDLPGAEP----SRVAREIEEV 230 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~--------~~piIvViNKiDl~~~~~----~~~~~el~~~ 230 (646)
+|...-..+++.+|.++||+|.....+++++..|+..... .-|+|+++||+|+.+... ....++....
T Consensus 70 RFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s 149 (210)
T KOG0394|consen 70 RFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKS 149 (210)
T ss_pred HhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHh
Confidence 9999999999999999999999999999999999876542 578999999999976432 2222333333
Q ss_pred hCCCcccccccccccccchhHHHHHHHHhCCCC
Q 043429 231 IGLDCTNAILCSAKEGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 231 l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P 263 (646)
.| ..|+|++|||.+.||++.|+.+......-
T Consensus 150 ~g--nipyfEtSAK~~~NV~~AFe~ia~~aL~~ 180 (210)
T KOG0394|consen 150 KG--NIPYFETSAKEATNVDEAFEEIARRALAN 180 (210)
T ss_pred cC--CceeEEecccccccHHHHHHHHHHHHHhc
Confidence 23 34799999999999999999998876543
No 96
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.84 E-value=1.1e-20 Score=172.54 Aligned_cols=158 Identities=20% Similarity=0.181 Sum_probs=129.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
...+|.+||.+|+|||||+-++...+ ++.+...||..++.......++..+++.||||+|+++
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~-----------------fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqEr 72 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNT-----------------FDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQER 72 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcc-----------------cCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHh
Confidence 34799999999999999999997722 2334455788877777777888999999999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc-----CCCeEEEEeccCCCCCCc--hHHHHHHHHHhCCCcc
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPGAEP--SRVAREIEEVIGLDCT 236 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~-----~~piIvViNKiDl~~~~~--~~~~~el~~~l~~~~~ 236 (646)
|+..+..|++.+.|+|+|+|.+.+.++..+..|...++. ++-.++|+||+|..+.+. .+.--.+++.++.
T Consensus 73 FRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~--- 149 (209)
T KOG0080|consen 73 FRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRC--- 149 (209)
T ss_pred hhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCc---
Confidence 999999999999999999999999999999999888873 566899999999875432 2222344444443
Q ss_pred cccccccccccchhHHHHHHHHhCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
-++++|||+.+||...|+.+++.|-
T Consensus 150 LFiE~SAkt~~~V~~~FeelveKIi 174 (209)
T KOG0080|consen 150 LFIECSAKTRENVQCCFEELVEKII 174 (209)
T ss_pred EEEEcchhhhccHHHHHHHHHHHHh
Confidence 3799999999999999999988763
No 97
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.84 E-value=2e-20 Score=178.93 Aligned_cols=156 Identities=18% Similarity=0.237 Sum_probs=116.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.||+++|.+|+|||||+++|.+... ...+. .|+...........++..+.+.+|||||+.++.
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~-----------~~~~~------~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~ 64 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSF-----------TSAFV------STVGIDFKVKTVFRNDKRVKLQIWDTAGQERYR 64 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-----------CCCCC------CceeeEEEEEEEEECCEEEEEEEEECCChHHHH
Confidence 5899999999999999999986221 11111 122211111122223446889999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCCc--hHHHHHHHHHhCCCccccc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAEP--SRVAREIEEVIGLDCTNAI 239 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~~--~~~~~el~~~l~~~~~~i~ 239 (646)
..+..+++.+|++++|+|.++..+++.+..|...+. .+.|+++|+||+|+..... .+...++.+.++. +++
T Consensus 65 ~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~ 141 (165)
T cd01865 65 TITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGF---EFF 141 (165)
T ss_pred HHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCC---EEE
Confidence 999999999999999999999888888888876654 2678999999999965432 2334455555555 489
Q ss_pred ccccccccchhHHHHHHHHhCC
Q 043429 240 LCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 240 ~vSAk~g~GV~eLl~~I~~~ip 261 (646)
++||++|.|++++|+++++.++
T Consensus 142 ~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 142 EASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999987653
No 98
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.84 E-value=1.8e-20 Score=188.27 Aligned_cols=157 Identities=15% Similarity=0.156 Sum_probs=120.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
...||+++|+.|+|||||+++++.... ..+...|+........+..++..+.+++|||||+++
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f-----------------~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 74 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF-----------------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCC-----------------CCccCCccceeEEEEEEEECCeEEEEEEEECCCchh
Confidence 346999999999999999999876211 111223444444444555555678999999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH---cCCCeEEEEeccCCCCCCc-hHHHHHHHHHhCCCccccc
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NNLEIIPVLNKIDLPGAEP-SRVAREIEEVIGLDCTNAI 239 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~---~~~piIvViNKiDl~~~~~-~~~~~el~~~l~~~~~~i~ 239 (646)
|...+..+++.+|++|+|+|.++..+++.+..|...+. .++|+++|+||+|+..... .+.. ++.+..+ .+++
T Consensus 75 ~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~---~~~~ 150 (219)
T PLN03071 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKN---LQYY 150 (219)
T ss_pred hhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHH-HHHHhcC---CEEE
Confidence 99888889999999999999999999999988876654 4789999999999864432 2212 3333333 3589
Q ss_pred ccccccccchhHHHHHHHHhCC
Q 043429 240 LCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 240 ~vSAk~g~GV~eLl~~I~~~ip 261 (646)
++||++|.||+++|++|++.+.
T Consensus 151 e~SAk~~~~i~~~f~~l~~~~~ 172 (219)
T PLN03071 151 EISAKSNYNFEKPFLYLARKLA 172 (219)
T ss_pred EcCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 99
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.84 E-value=3.2e-20 Score=182.44 Aligned_cols=159 Identities=17% Similarity=0.176 Sum_probs=119.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|+.|+|||||+.+++... +.+ +...|+.... ...+..++..+.+++|||||+++|.
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~-----------f~~------~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~ 65 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNA-----------FPK------EYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYD 65 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC-----------CCc------CCCCceEeee-EEEEEECCEEEEEEEEECCCchhhh
Confidence 589999999999999999998621 111 1122443322 2233445667899999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHH-HHHHHHH---cCCCeEEEEeccCCCCCCc--------------hHHHHHH
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLALE---NNLEIIPVLNKIDLPGAEP--------------SRVAREI 227 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~-~~~~~~~---~~~piIvViNKiDl~~~~~--------------~~~~~el 227 (646)
..+..+++.+|++|+|+|+++..+++.+. .|...+. .++|+++|+||+|+.+... .+..+++
T Consensus 66 ~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~ 145 (191)
T cd01875 66 RLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGAL 145 (191)
T ss_pred hhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHH
Confidence 99999999999999999999999999886 5765443 4789999999999965421 1122333
Q ss_pred HHHhCCCcccccccccccccchhHHHHHHHHhCCCCC
Q 043429 228 EEVIGLDCTNAILCSAKEGIGINEILNAIVKRIPPPS 264 (646)
Q Consensus 228 ~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P~ 264 (646)
.+.++ ..+++++||++|.||+++|+++++.+..|.
T Consensus 146 a~~~~--~~~~~e~SAk~g~~v~e~f~~l~~~~~~~~ 180 (191)
T cd01875 146 AKQIH--AVKYLECSALNQDGVKEVFAEAVRAVLNPT 180 (191)
T ss_pred HHHcC--CcEEEEeCCCCCCCHHHHHHHHHHHHhccc
Confidence 33333 235899999999999999999999876664
No 100
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.84 E-value=4.9e-20 Score=175.17 Aligned_cols=154 Identities=21% Similarity=0.265 Sum_probs=113.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.||+++|.+|+|||||+++++..... ..... |+.... ......++..+.+++|||||+.+|.
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~-----------~~~~~------t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~ 64 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFV-----------TDYDP------TIEDSY-TKQCEIDGQWAILDILDTAGQEEFS 64 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC-----------cccCC------CccceE-EEEEEECCEEEEEEEEECCCCcchh
Confidence 58999999999999999999873211 10100 111111 1112233445789999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCCc--hHHHHHHHHHhCCCcccc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAEP--SRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~~--~~~~~el~~~l~~~~~~i 238 (646)
..+..+++.+|++++|+|+++..+++....|...+. .++|+++|+||+|+..... .+...++.+.++. ++
T Consensus 65 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~---~~ 141 (164)
T cd04145 65 AMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKI---PY 141 (164)
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCC---cE
Confidence 999999999999999999999888888877765543 3789999999999975432 2223344444443 58
Q ss_pred cccccccccchhHHHHHHHHhC
Q 043429 239 ILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++||++|.|++++|++|++.+
T Consensus 142 ~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 142 IETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred EEeeCCCCCCHHHHHHHHHHhh
Confidence 9999999999999999998764
No 101
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.84 E-value=3.2e-20 Score=176.63 Aligned_cols=154 Identities=21% Similarity=0.247 Sum_probs=115.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
||+++|++|+|||||+++|++.... . ....|+........+..++..+.+++|||||+.+|..
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~---------------~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFV---------------S--KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLE 64 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC---------------C--CCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHH
Confidence 7999999999999999999873210 1 1112333333223333445678999999999999998
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH---------cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---------NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDC 235 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~---------~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~ 235 (646)
.+..+++.+|++|+|+|+++..+++....|...+. .+.|+++|+||+|+.... ..+....+....+
T Consensus 65 ~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--- 141 (168)
T cd04119 65 VRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKG--- 141 (168)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcC---
Confidence 88889999999999999999988888888876543 357899999999986321 2233333444444
Q ss_pred ccccccccccccchhHHHHHHHHhC
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
.+++++||++|.|+++++++|.+.+
T Consensus 142 ~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 142 FKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998764
No 102
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.84 E-value=3e-20 Score=180.01 Aligned_cols=157 Identities=18% Similarity=0.236 Sum_probs=117.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeE--EEEEEEe--------cCCCeEE
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQA--ARMRYVF--------ENEPFCL 153 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~--~~~~~~~--------~~~~~~l 153 (646)
+..+|+++|.+|+|||||++++...... .+...|+.... ..+.+.. .+..+.+
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~-----------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFN-----------------PKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHL 65 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-----------------ccCCCccceEEEEEEEEEcCccccccccCCCEEEE
Confidence 4579999999999999999999762110 01111222222 2222221 1345889
Q ss_pred EEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc-----CCCeEEEEeccCCCCCC--chHHHHH
Q 043429 154 NLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPGAE--PSRVARE 226 (646)
Q Consensus 154 ~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~-----~~piIvViNKiDl~~~~--~~~~~~e 226 (646)
.||||||+++|...+..+++.+|++++|+|+++..+++.+..|...+.. +.|+++|+||+|+.... ..+...+
T Consensus 66 ~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~ 145 (180)
T cd04127 66 QLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKA 145 (180)
T ss_pred EEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHH
Confidence 9999999999999999999999999999999999999999888766542 67899999999986532 2334456
Q ss_pred HHHHhCCCcccccccccccccchhHHHHHHHHhC
Q 043429 227 IEEVIGLDCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 227 l~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+.+.++. +++++||++|.|+++++++|++.+
T Consensus 146 ~~~~~~~---~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 146 LADKYGI---PYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred HHHHcCC---eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6666664 589999999999999999998754
No 103
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.84 E-value=3.6e-20 Score=176.36 Aligned_cols=154 Identities=24% Similarity=0.327 Sum_probs=114.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
+|+++|++|+|||||+++|++.... +.... |+. .........++..+.+++|||||+.+|..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~-----------~~~~~------t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~ 63 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV-----------DDYDP------TIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSA 63 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC-----------cccCC------chh-hhEEEEEEECCEEEEEEEEECCCcccchH
Confidence 7999999999999999999873211 10100 111 11112223344568899999999999999
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCCc--hHHHHHHHHHhCCCccccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAEP--SRVAREIEEVIGLDCTNAI 239 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~~--~~~~~el~~~l~~~~~~i~ 239 (646)
.+..+++.+|++++|+|+++..+++....|...+. .+.|+++|+||+|+..... .+...++.+.++ .+++
T Consensus 64 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~ 140 (164)
T smart00173 64 MRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWG---CPFL 140 (164)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcC---CEEE
Confidence 99999999999999999999888888777765543 3689999999999875432 233344444444 4699
Q ss_pred ccccccccchhHHHHHHHHhCC
Q 043429 240 LCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 240 ~vSAk~g~GV~eLl~~I~~~ip 261 (646)
++||++|.|++++|++|++.+.
T Consensus 141 ~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 141 ETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred EeecCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999998764
No 104
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.84 E-value=3e-20 Score=176.57 Aligned_cols=154 Identities=23% Similarity=0.221 Sum_probs=116.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
||+++|++|+|||||+++|+..... .+.. .|+........+..++..+.+++|||||+.+|..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~---------------~~~~--~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~ 64 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFK---------------EDSQ--HTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRS 64 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC---------------CCCC--CceeeeEEEEEEEECCEEEEEEEEECcchHHHHH
Confidence 8999999999999999999863211 1111 1222222333344445568899999999999999
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcccccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTNAIL 240 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~i~~ 240 (646)
.+..+++.+|++++|+|++++.+++.+..|..... .++|+++|+||+|+.... ..+....+....+ .++++
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~ 141 (161)
T cd04113 65 VTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENG---LLFLE 141 (161)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcC---CEEEE
Confidence 89999999999999999999999988888876543 478999999999986532 2233344444444 46999
Q ss_pred cccccccchhHHHHHHHHhC
Q 043429 241 CSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 241 vSAk~g~GV~eLl~~I~~~i 260 (646)
+||++|.|++++|+++++.+
T Consensus 142 ~Sa~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 142 TSALTGENVEEAFLKCARSI 161 (161)
T ss_pred EECCCCCCHHHHHHHHHHhC
Confidence 99999999999999998753
No 105
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.84 E-value=3.3e-20 Score=177.33 Aligned_cols=156 Identities=20% Similarity=0.238 Sum_probs=116.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
+.||+++|.+|+|||||+++++..... ..... |+............+..+.+++|||||+.+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~---------------~~~~~--t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 64 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYT---------------ESYIS--TIGVDFKIRTIELDGKTIKLQIWDTAGQERF 64 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC---------------CCCCC--ccceeEEEEEEEECCEEEEEEEEECCCcHhH
Confidence 468999999999999999999762111 11111 2222222222233444678999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCCc--hHHHHHHHHHhCCCcccc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAEP--SRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~~--~~~~~el~~~l~~~~~~i 238 (646)
...+..+++.+|++|+|+|+++..++..+..|...+. .+.|+++|+||+|+..... .+...++.+.++. ++
T Consensus 65 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~ 141 (166)
T cd01869 65 RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGI---PF 141 (166)
T ss_pred HHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCC---eE
Confidence 9988999999999999999999988888888877654 3689999999999865432 2333445554544 59
Q ss_pred cccccccccchhHHHHHHHHhC
Q 043429 239 ILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++||++|.|++++|++|.+.+
T Consensus 142 ~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 142 LETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred EEEECCCCcCHHHHHHHHHHHH
Confidence 9999999999999999998765
No 106
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.84 E-value=4.4e-20 Score=176.06 Aligned_cols=154 Identities=22% Similarity=0.289 Sum_probs=115.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|.+|+|||||+++++.. .. .+... .|+... ....+..++..+.+++|||||+..|.
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~--~~---------~~~~~------~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~ 63 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQG--IF---------VEKYD------PTIEDS-YRKQVEVDGQQCMLEILDTAGTEQFT 63 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhC--CC---------CcccC------Ccchhe-EEEEEEECCEEEEEEEEECCCcccch
Confidence 38999999999999999999852 11 11111 122211 11223344557889999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCCc--hHHHHHHHHHhCCCcccc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAEP--SRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~~--~~~~~el~~~l~~~~~~i 238 (646)
..+..+++.+|++++|+|.++..+++....|...+. .++|+++|+||+|+.+... .+..+++.+.++. ++
T Consensus 64 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~ 140 (164)
T cd04175 64 AMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGC---AF 140 (164)
T ss_pred hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCC---EE
Confidence 999999999999999999999888888777765543 3689999999999975432 2233455555553 58
Q ss_pred cccccccccchhHHHHHHHHhC
Q 043429 239 ILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++||++|.|++++|++|.+.+
T Consensus 141 ~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 141 LETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred EEeeCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998765
No 107
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.84 E-value=5.6e-20 Score=173.85 Aligned_cols=154 Identities=25% Similarity=0.336 Sum_probs=112.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.||+++|.+|+|||||+++|+.... .+.+.. |.... .......++..+.+++|||||+++|.
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~-----------~~~~~~------t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~ 63 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF-----------VDEYDP------TIEDS-YRKQVVIDGETCLLDILDTAGQEEYS 63 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-----------cCCcCC------cchhe-EEEEEEECCEEEEEEEEECCCCcchH
Confidence 4799999999999999999986321 111111 11111 11122334446778999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCCc-hHHHHHHHHHhCCCccccc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAEP-SRVAREIEEVIGLDCTNAI 239 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~~-~~~~~el~~~l~~~~~~i~ 239 (646)
..+..+++.+|++++|+|.++..+++....|...+. .++|+++|+||+|+..... .....++.+.++. +++
T Consensus 64 ~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~ 140 (162)
T cd04138 64 AMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGI---PYI 140 (162)
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCC---eEE
Confidence 999999999999999999999888877776655443 3789999999999875332 2233344444444 589
Q ss_pred ccccccccchhHHHHHHHHhC
Q 043429 240 LCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 240 ~vSAk~g~GV~eLl~~I~~~i 260 (646)
++||++|.|++++|+++++.+
T Consensus 141 ~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 141 ETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred EecCCCCCCHHHHHHHHHHHh
Confidence 999999999999999998754
No 108
>PTZ00369 Ras-like protein; Provisional
Probab=99.84 E-value=3.6e-20 Score=181.65 Aligned_cols=156 Identities=22% Similarity=0.318 Sum_probs=117.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|++|+|||||++++++... .+.+. .|+.... ......++..+.+++|||||+.+|.
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~-----------~~~~~------~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~ 67 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHF-----------IDEYD------PTIEDSY-RKQCVIDEETCLLDILDTAGQEEYS 67 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-----------CcCcC------CchhhEE-EEEEEECCEEEEEEEEeCCCCccch
Confidence 5999999999999999999987321 11111 1222111 1222334556889999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCCc--hHHHHHHHHHhCCCcccc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAEP--SRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~~--~~~~~el~~~l~~~~~~i 238 (646)
..+..+++.+|++++|+|+++..+++....|...+. .++|+++|+||+|+.+... .....++.+.++. ++
T Consensus 68 ~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~---~~ 144 (189)
T PTZ00369 68 AMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGI---PF 144 (189)
T ss_pred hhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCC---EE
Confidence 999999999999999999999998888888876653 2789999999999865432 2223344444443 58
Q ss_pred cccccccccchhHHHHHHHHhCCC
Q 043429 239 ILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+++||++|.||+++|++|++.+..
T Consensus 145 ~e~Sak~~~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 145 LETSAKQRVNVDEAFYELVREIRK 168 (189)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999887643
No 109
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.84 E-value=7.8e-21 Score=159.90 Aligned_cols=80 Identities=59% Similarity=1.061 Sum_probs=75.9
Q ss_pred ccEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeecc
Q 043429 447 EPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKESQ 526 (646)
Q Consensus 447 EP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~~ 526 (646)
|||++++|.+|++|+|+||++|++|||++.+++..+++++.|+|.+|++|++++|+++|+|+|+|+|+|+++|+||+++|
T Consensus 1 EPi~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~~~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~~f~~y~~~~ 80 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYLDANRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRESD 80 (80)
T ss_pred CCEEEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCCCeEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEEEecccccCC
Confidence 89999999999999999999999999999999976656899999999999955999999999999999999999999975
No 110
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.84 E-value=4.7e-20 Score=175.92 Aligned_cols=156 Identities=24% Similarity=0.299 Sum_probs=116.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|.+|+|||||+++|+..... .+..+ |+...........++..+.+++|||||+..+
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~---------------~~~~~--t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 65 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFN---------------LDSKS--TIGVEFATRSIQIDGKTIKAQIWDTAGQERY 65 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC---------------CCCCC--ccceEEEEEEEEECCEEEEEEEEeCCChHHH
Confidence 469999999999999999999762111 11111 2222222333334445678999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc----CCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcccc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~----~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~i 238 (646)
...+..+++.++++|+|+|+++..+++.+..|...+.. ++|+++|+||+|+.... ..+....+....+ .++
T Consensus 66 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~ 142 (165)
T cd01868 66 RAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNG---LSF 142 (165)
T ss_pred HHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcC---CEE
Confidence 88888999999999999999998888888888766543 58999999999987543 2223334443333 358
Q ss_pred cccccccccchhHHHHHHHHhC
Q 043429 239 ILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++||++|.|++++++++++.+
T Consensus 143 ~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 143 IETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998765
No 111
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.84 E-value=4.6e-20 Score=203.72 Aligned_cols=223 Identities=22% Similarity=0.205 Sum_probs=159.4
Q ss_pred cCCCCCCEEEeeecccccccCCCcCccchhhcccccccccccccccccceeEeecCCCCCchHHhhhhhccccc----cC
Q 043429 5 LSSSPAPVLSIKHQTFATLKKPHISSLSHFLSKSHRRCNYSLSISKHSCIFRVSCQSQATDAELATRVGQDRLL----KV 80 (646)
Q Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~~s~~~~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~----~~ 80 (646)
+...+.|++.+-++.+..-... . ...+...+...++.+|+.++.+.....+........ ..
T Consensus 103 l~~~~~piilVvNK~D~~~~~~---~------------~~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~~~~ 167 (429)
T TIGR03594 103 LRKSGKPVILVANKIDGKKEDA---V------------AAEFYSLGFGEPIPISAEHGRGIGDLLDAILELLPEEEEEEE 167 (429)
T ss_pred HHHhCCCEEEEEECccCCcccc---c------------HHHHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCccccccc
Confidence 3445778888888888532111 0 011233445567999999999998888776443211 11
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCC
Q 043429 81 PASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPG 160 (646)
Q Consensus 81 ~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG 160 (646)
..+...+|+++|++|+|||||+++|+..... .....+|+|.+.....+.+. +..+.+|||||
T Consensus 168 ~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~--------------~~~~~~gtt~~~~~~~~~~~----~~~~~liDT~G 229 (429)
T TIGR03594 168 EEDGPIKIAIIGRPNVGKSTLVNALLGEERV--------------IVSDIAGTTRDSIDIPFERN----GKKYLLIDTAG 229 (429)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHCCCee--------------ecCCCCCceECcEeEEEEEC----CcEEEEEECCC
Confidence 1234579999999999999999999873221 12345677877655555443 56899999999
Q ss_pred Cccchhh-----------HhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCC-C-CchHHHHHH
Q 043429 161 HVDFSYE-----------VSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPG-A-EPSRVAREI 227 (646)
Q Consensus 161 ~~df~~~-----------~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~-~-~~~~~~~el 227 (646)
+.++... ..++++.||++|+|+|++++.+.++...+..+.+.++|+++|+||+|+.. . ..++..+++
T Consensus 230 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~ 309 (429)
T TIGR03594 230 IRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKEL 309 (429)
T ss_pred ccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHH
Confidence 8664321 23578899999999999999999999888888888999999999999972 1 123344455
Q ss_pred HHHhC-CCcccccccccccccchhHHHHHHHHhC
Q 043429 228 EEVIG-LDCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 228 ~~~l~-~~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
.+.+. ....+++++||++|.|++++++++.+..
T Consensus 310 ~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~ 343 (429)
T TIGR03594 310 RRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVY 343 (429)
T ss_pred HHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 55443 2346899999999999999999998754
No 112
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.83 E-value=7.2e-20 Score=175.17 Aligned_cols=158 Identities=21% Similarity=0.234 Sum_probs=119.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
...++|+++|++|+|||||+++|.... .....+.|+........+..++..+.+.+|||||+.
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~-----------------~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 67 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGL-----------------FPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCC-----------------CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence 346899999999999999999997521 111234454444444444555556789999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCT 236 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~ 236 (646)
+|...+..+++.+|++++|+|++++.+++....|...+. .++|+++|+||+|+.... .....+++.+... .
T Consensus 68 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~---~ 144 (169)
T cd04114 68 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQD---M 144 (169)
T ss_pred HHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcC---C
Confidence 999998999999999999999999888887777765543 378999999999986432 1233344444333 4
Q ss_pred cccccccccccchhHHHHHHHHhC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++++||++|.|++++|++|.+.+
T Consensus 145 ~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 145 YYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998753
No 113
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.83 E-value=3.3e-20 Score=183.64 Aligned_cols=151 Identities=17% Similarity=0.195 Sum_probs=117.9
Q ss_pred EcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchhhHhh
Q 043429 91 IAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYEVSR 170 (646)
Q Consensus 91 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~~~~~ 170 (646)
+|+.|+|||||+.+++... ...+...|+........+..++..+.++||||||+++|...+..
T Consensus 1 vG~~~vGKTsLi~r~~~~~-----------------f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~ 63 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGE-----------------FEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDG 63 (200)
T ss_pred CCCCCCCHHHHHHHHhcCC-----------------CCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHH
Confidence 6999999999999997521 11123346666655566666667899999999999999999999
Q ss_pred hhhhccceEEEEeCCCCccHhhHHHHHHHHH---cCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCccccccccccccc
Q 043429 171 SLAACEGALLVVDASQGVEAQTLANVYLALE---NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGI 247 (646)
Q Consensus 171 ~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~---~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~~vSAk~g~ 247 (646)
+++.+|++|+|+|++++.+++.+..|...+. .++|+++|+||+|+..........++.+..+ .++++|||++|.
T Consensus 64 ~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~---~~~~e~SAk~~~ 140 (200)
T smart00176 64 YYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKN---LQYYDISAKSNY 140 (200)
T ss_pred HhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcC---CEEEEEeCCCCC
Confidence 9999999999999999999999888877554 4789999999999864332211123333333 358999999999
Q ss_pred chhHHHHHHHHhCC
Q 043429 248 GINEILNAIVKRIP 261 (646)
Q Consensus 248 GV~eLl~~I~~~ip 261 (646)
||+++|++|++.+.
T Consensus 141 ~v~~~F~~l~~~i~ 154 (200)
T smart00176 141 NFEKPFLWLARKLI 154 (200)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998764
No 114
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.83 E-value=6.5e-20 Score=177.18 Aligned_cols=156 Identities=18% Similarity=0.251 Sum_probs=116.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|..|+|||||+.+++.... . . +...|+.... ......++..+.++||||||+.+|.
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f--~---------~------~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~ 64 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSF--P---------D------YHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFT 64 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC--C---------C------CcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhH
Confidence 4899999999999999999986211 1 0 1111222111 1223334556889999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcccc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~i 238 (646)
..+..+++.+|++++|+|+++..++++...|...+. .++|+++|+||+|+.+.. ..+...++.+..+. ++
T Consensus 65 ~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~---~~ 141 (172)
T cd04141 65 AMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNC---PF 141 (172)
T ss_pred HHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCC---EE
Confidence 999999999999999999999999999887765443 368999999999986532 22233445444443 69
Q ss_pred cccccccccchhHHHHHHHHhCCC
Q 043429 239 ILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+++||++|.||+++|+++++.+-.
T Consensus 142 ~e~Sa~~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 142 FETSAALRHYIDDAFHGLVREIRR 165 (172)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999976543
No 115
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=7.5e-20 Score=203.99 Aligned_cols=223 Identities=18% Similarity=0.199 Sum_probs=157.1
Q ss_pred CCCCCCEEEeeecccccccCCCcCccchhhcccccccccccccccccceeEeecCCCCCchHHhhhhhccccccC----C
Q 043429 6 SSSPAPVLSIKHQTFATLKKPHISSLSHFLSKSHRRCNYSLSISKHSCIFRVSCQSQATDAELATRVGQDRLLKV----P 81 (646)
Q Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~~s~~~~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~----~ 81 (646)
...+.|++.+.++.+..-.. .... ..+..+...++.+|+.++.+...+...+........ .
T Consensus 143 ~~~~~piilV~NK~Dl~~~~---~~~~------------~~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~~~~~~~~ 207 (472)
T PRK03003 143 RRSGKPVILAANKVDDERGE---ADAA------------ALWSLGLGEPHPVSALHGRGVGDLLDAVLAALPEVPRVGSA 207 (472)
T ss_pred HHcCCCEEEEEECccCCccc---hhhH------------HHHhcCCCCeEEEEcCCCCCcHHHHHHHHhhcccccccccc
Confidence 34578999999999853211 1110 112223345688999999999988877654432210 1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH 161 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~ 161 (646)
....++|+|+|++|+|||||+++|+..... ..+...|+|.+.....+.+. +..+.||||||.
T Consensus 208 ~~~~~kI~iiG~~nvGKSSLin~l~~~~~~--------------~~s~~~gtT~d~~~~~~~~~----~~~~~l~DTaG~ 269 (472)
T PRK03003 208 SGGPRRVALVGKPNVGKSSLLNKLAGEERS--------------VVDDVAGTTVDPVDSLIELG----GKTWRFVDTAGL 269 (472)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcc--------------cccCCCCccCCcceEEEEEC----CEEEEEEECCCc
Confidence 235689999999999999999999873211 13445677776655555443 567889999996
Q ss_pred cc----------chhh-HhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCc-hHHHHHHHH
Q 043429 162 VD----------FSYE-VSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEP-SRVAREIEE 229 (646)
Q Consensus 162 ~d----------f~~~-~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~-~~~~~el~~ 229 (646)
.+ |... ...+++.+|++++|+|++++.+.+....+......++|+++|+||+|+..... ....+++.+
T Consensus 270 ~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~ 349 (472)
T PRK03003 270 RRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDR 349 (472)
T ss_pred cccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHH
Confidence 32 2111 12467899999999999999999999888878888999999999999975332 223344544
Q ss_pred HhC-CCcccccccccccccchhHHHHHHHHhCC
Q 043429 230 VIG-LDCTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 230 ~l~-~~~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
.+. ....+++++||++|.||+++|+.+.+.+.
T Consensus 350 ~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 350 ELAQVPWAPRVNISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred hcccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 443 23457899999999999999999987653
No 116
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.4e-20 Score=178.70 Aligned_cols=159 Identities=22% Similarity=0.258 Sum_probs=136.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH 161 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~ 161 (646)
-++..+|++||++++|||-|+.|+... +...+...||...+.+.....+++.++.+||||+|+
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrn-----------------EF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQ 73 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRN-----------------EFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQ 73 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhccc-----------------ccCcccccceeEEEEeeceeecCcEEEEeeecccch
Confidence 356789999999999999999999652 233345568888888888888899999999999999
Q ss_pred ccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc----CCCeEEEEeccCCCC--CCchHHHHHHHHHhCCCc
Q 043429 162 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPG--AEPSRVAREIEEVIGLDC 235 (646)
Q Consensus 162 ~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~----~~piIvViNKiDl~~--~~~~~~~~el~~~l~~~~ 235 (646)
++|....+.|++.+-|++||+|.+...+++.+..|+..++. ++++++|+||+||.+ +.+.+..+.+++..++.
T Consensus 74 ERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~- 152 (222)
T KOG0087|consen 74 ERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLF- 152 (222)
T ss_pred hhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCce-
Confidence 99999999999999999999999999999999999988874 788999999999976 44566667777777765
Q ss_pred ccccccccccccchhHHHHHHHHhC
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
++++||..+.||++.|+.++..|
T Consensus 153 --f~EtSAl~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 153 --FLETSALDATNVEKAFERVLTEI 175 (222)
T ss_pred --EEEecccccccHHHHHHHHHHHH
Confidence 89999999999999998887655
No 117
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.83 E-value=4.5e-20 Score=175.06 Aligned_cols=149 Identities=18% Similarity=0.264 Sum_probs=106.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
+|+++|.+|+|||||+++|....... . ....|+......+.+ .++.+++|||||+.+|..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~----------~------~~~~t~g~~~~~~~~----~~~~~~l~Dt~G~~~~~~ 60 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQS----------Q------IIVPTVGFNVESFEK----GNLSFTAFDMSGQGKYRG 60 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCc----------c------eecCccccceEEEEE----CCEEEEEEECCCCHhhHH
Confidence 58999999999999999997621100 0 011122222222222 378999999999999999
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHH-------HcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCC-----
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-------ENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLD----- 234 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~-------~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~----- 234 (646)
.+..+++.+|++|+|+|++++.++.....|.... ..++|+++|+||+|+.++.... ++.+.++..
T Consensus 61 ~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~---~~~~~l~~~~~~~~ 137 (162)
T cd04157 61 LWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAV---KITQLLGLENIKDK 137 (162)
T ss_pred HHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHH---HHHHHhCCccccCc
Confidence 9999999999999999999887665544443322 1479999999999997654322 233333321
Q ss_pred cccccccccccccchhHHHHHHHH
Q 043429 235 CTNAILCSAKEGIGINEILNAIVK 258 (646)
Q Consensus 235 ~~~i~~vSAk~g~GV~eLl~~I~~ 258 (646)
..+++++||++|.|+++++++|.+
T Consensus 138 ~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 138 PWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred eEEEEEeeCCCCCchHHHHHHHhc
Confidence 235899999999999999999865
No 118
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.83 E-value=6.3e-20 Score=176.96 Aligned_cols=155 Identities=17% Similarity=0.210 Sum_probs=116.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
+|+++|+.|+|||||+++++... +.+ +...|+........+...+..+.+++|||||+++|..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~-----------f~~------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV-----------FDK------NYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKC 64 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-----------CCC------CCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHh
Confidence 78999999999999999998721 111 1122444444334444556678899999999999999
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHH-Hc----CCCeEEEEeccCCCCCCc----hHHHHHHHHHhCCCccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-EN----NLEIIPVLNKIDLPGAEP----SRVAREIEEVIGLDCTN 237 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~-~~----~~piIvViNKiDl~~~~~----~~~~~el~~~l~~~~~~ 237 (646)
.+..+++.+|++++|+|+++..++.....|...+ +. +.|+++|+||+|+..... ++...++.+.++. +
T Consensus 65 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~---~ 141 (170)
T cd04108 65 IASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQA---E 141 (170)
T ss_pred hHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCC---e
Confidence 9999999999999999999988888888887654 32 256899999999864432 2222344444443 5
Q ss_pred ccccccccccchhHHHHHHHHhCC
Q 043429 238 AILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
++++||++|.|++++|+.|.+.+.
T Consensus 142 ~~e~Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 142 YWSVSALSGENVREFFFRVAALTF 165 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999987653
No 119
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.83 E-value=7.2e-20 Score=173.82 Aligned_cols=155 Identities=25% Similarity=0.248 Sum_probs=117.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
||+++|++|+|||||+++|+.... .. ....|+........+..++..+.+++|||||+..|..
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~---------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 64 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKF---------------SE--QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRS 64 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC---------------CC--CCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH
Confidence 799999999999999999976211 11 1111333222223333444457899999999999999
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcccccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTNAIL 240 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~i~~ 240 (646)
....+++.+|++++|+|+++..+++....|...+. .++|+++|+||+|+.... ..+..+++.+..+. ++++
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~e 141 (164)
T smart00175 65 ITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGL---PFFE 141 (164)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCC---eEEE
Confidence 99999999999999999999888888887876554 368999999999986532 23334445555554 4999
Q ss_pred cccccccchhHHHHHHHHhCC
Q 043429 241 CSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 241 vSAk~g~GV~eLl~~I~~~ip 261 (646)
+||++|.|+++++++|.+.++
T Consensus 142 ~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 142 TSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred EeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999998764
No 120
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.83 E-value=5.6e-20 Score=180.47 Aligned_cols=155 Identities=18% Similarity=0.250 Sum_probs=114.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
+|+++|.+|+|||||+++|+..... +.+ ..|+.... ......++..+.+++|||||+.+|..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~-----------~~~------~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~ 62 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV-----------ETY------DPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTA 62 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-----------ccC------CCchHhhE-EEEEEECCEEEEEEEEECCCchhhHH
Confidence 5899999999999999999862111 111 11221111 11122334457899999999999999
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-------cCCCeEEEEeccCCCCCCc--hHHHHHHHHHhCCCccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-------NNLEIIPVLNKIDLPGAEP--SRVAREIEEVIGLDCTN 237 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-------~~~piIvViNKiDl~~~~~--~~~~~el~~~l~~~~~~ 237 (646)
.+..+++.+|++|+|+|.++..++..+..|...+. .+.|+++|+||+|+..... .....++.+.++. +
T Consensus 63 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~---~ 139 (190)
T cd04144 63 LRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGC---E 139 (190)
T ss_pred HHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCC---E
Confidence 99999999999999999999988888888766553 3689999999999864322 2223445455554 5
Q ss_pred ccccccccccchhHHHHHHHHhCCC
Q 043429 238 AILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
++++||++|.|++++|+++++.+-.
T Consensus 140 ~~e~SAk~~~~v~~l~~~l~~~l~~ 164 (190)
T cd04144 140 FIEASAKTNVNVERAFYTLVRALRQ 164 (190)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHH
Confidence 8999999999999999999986643
No 121
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.83 E-value=5.4e-20 Score=176.98 Aligned_cols=154 Identities=19% Similarity=0.198 Sum_probs=112.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
+|+++|..|+|||||+++|..... . ....|+......+.+ .++.+++|||||+.++..
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~-----------~-------~~~~T~~~~~~~~~~----~~~~i~l~Dt~G~~~~~~ 58 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF-----------M-------QPIPTIGFNVETVEY----KNLKFTIWDVGGKHKLRP 58 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-----------C-------CcCCcCceeEEEEEE----CCEEEEEEECCCChhcch
Confidence 589999999999999999976210 0 012244333333333 378999999999999998
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCCchHHHHHHHHHhCC---Ccccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL---DCTNA 238 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~~~~~~~el~~~l~~---~~~~i 238 (646)
.+..+++.+|++++|+|+++..++.....|..... .+.|+++|+||+|+......+...++....+. ....+
T Consensus 59 ~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (169)
T cd04158 59 LWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYI 138 (169)
T ss_pred HHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEE
Confidence 89999999999999999999877777666655443 24899999999999765333323333222121 11257
Q ss_pred cccccccccchhHHHHHHHHhCCC
Q 043429 239 ILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+++||++|.||+++|++|.+.++.
T Consensus 139 ~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 139 QGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred EeCcCCCCCCHHHHHHHHHHHHhh
Confidence 899999999999999999987654
No 122
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.83 E-value=7.6e-20 Score=180.95 Aligned_cols=158 Identities=23% Similarity=0.232 Sum_probs=119.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
...+|+++|++|+|||||+++|+.... .+ ....|+........+...+..+.++||||||++.
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~-----------~~------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~ 67 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTF-----------SG------SYITTIGVDFKIRTVEINGERVKLQIWDTAGQER 67 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-----------CC------CcCccccceeEEEEEEECCEEEEEEEEeCCCchh
Confidence 357999999999999999999976211 01 1112333333223333344567899999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc---CCCeEEEEeccCCCCCCc--hHHHHHHHHHhCCCcccc
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN---NLEIIPVLNKIDLPGAEP--SRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~---~~piIvViNKiDl~~~~~--~~~~~el~~~l~~~~~~i 238 (646)
|...+..+++.+|++++|+|+++..+++.+..|...+.. ..|+++|+||+|+..... .+...++...++ .++
T Consensus 68 ~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~---~~~ 144 (199)
T cd04110 68 FRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMG---ISL 144 (199)
T ss_pred HHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcC---CEE
Confidence 999999999999999999999999998888888776653 588999999999875432 233334444444 359
Q ss_pred cccccccccchhHHHHHHHHhCC
Q 043429 239 ILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+++||++|.||+++|++|.+.+.
T Consensus 145 ~e~Sa~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 145 FETSAKENINVEEMFNCITELVL 167 (199)
T ss_pred EEEECCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 123
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.83 E-value=1.1e-19 Score=174.45 Aligned_cols=157 Identities=18% Similarity=0.179 Sum_probs=117.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|++|+|||||+++++.... .. +.-.|+........+..++..+.++||||||+.+|
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~---------------~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~ 67 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKF---------------DT--QLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERF 67 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC---------------Cc--CcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHH
Confidence 47999999999999999999976211 11 11113333333333444566788999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH--------cCCCeEEEEeccCCCCCC-chHHHHHHHHHhCCCc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--------NNLEIIPVLNKIDLPGAE-PSRVAREIEEVIGLDC 235 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~--------~~~piIvViNKiDl~~~~-~~~~~~el~~~l~~~~ 235 (646)
...+..+++.+|++++|+|.++..+++....|...+. .++|+++|+||+|+.... ..+..+++.+.++.
T Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-- 145 (170)
T cd04116 68 RSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGD-- 145 (170)
T ss_pred HHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCC--
Confidence 9999999999999999999999988888887765442 358999999999986422 23334445444442
Q ss_pred ccccccccccccchhHHHHHHHHhC
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
.+++++||++|.|+.++|+++++.+
T Consensus 146 ~~~~e~Sa~~~~~v~~~~~~~~~~~ 170 (170)
T cd04116 146 YPYFETSAKDATNVAAAFEEAVRRV 170 (170)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998753
No 124
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.83 E-value=9.3e-20 Score=177.89 Aligned_cols=155 Identities=17% Similarity=0.198 Sum_probs=118.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|+.|+|||||+.+++... +.+ +...|+.... ...+..++..+.++||||+|+++|
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~-----------f~~------~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~ 66 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDC-----------FPE------NYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYY 66 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC-----------CCC------ccCCceeeee-EEEEEECCEEEEEEEEECCCchhh
Confidence 4689999999999999999998621 111 1122443222 233445566789999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhH-HHHHHHHHc---CCCeEEEEeccCCCCC--------------CchHHHHH
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALEN---NLEIIPVLNKIDLPGA--------------EPSRVARE 226 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~-~~~~~~~~~---~~piIvViNKiDl~~~--------------~~~~~~~e 226 (646)
......+++.+|++|+|+|.++..+++.+ ..|...+.. +.|+++|+||+|+... ...+..++
T Consensus 67 ~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (182)
T cd04172 67 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGAN 146 (182)
T ss_pred HhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHH
Confidence 99888999999999999999999999986 678766543 6889999999998531 12334556
Q ss_pred HHHHhCCCcccccccccccccc-hhHHHHHHHHh
Q 043429 227 IEEVIGLDCTNAILCSAKEGIG-INEILNAIVKR 259 (646)
Q Consensus 227 l~~~l~~~~~~i~~vSAk~g~G-V~eLl~~I~~~ 259 (646)
+.+.++. .++++|||++|.| |+++|+.+++.
T Consensus 147 ~a~~~~~--~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 147 MAKQIGA--ATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HHHHcCC--CEEEECCcCCCCCCHHHHHHHHHHH
Confidence 6666653 2589999999998 99999998874
No 125
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.83 E-value=9.3e-20 Score=177.69 Aligned_cols=152 Identities=20% Similarity=0.239 Sum_probs=113.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|..|+|||||++++.... +.. ...|+..+...+.+ +++.+++|||||+..|
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~-----------~~~-------~~pt~g~~~~~~~~----~~~~~~i~D~~Gq~~~ 74 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGE-----------IVT-------TIPTIGFNVETVEY----KNISFTVWDVGGQDKI 74 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCC-----------Ccc-------ccCCcceeEEEEEE----CCEEEEEEECCCCHHH
Confidence 3689999999999999999996411 100 11233333333333 3789999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHH-H----cCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcc---
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCT--- 236 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~-~----~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~--- 236 (646)
...+..+++.+|++|+|+|+++..+......+.... . .+.|+++|+||+|++++.. .+++.+.+++...
T Consensus 75 ~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~l~l~~~~~~ 151 (181)
T PLN00223 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQR 151 (181)
T ss_pred HHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCC---HHHHHHHhCccccCCC
Confidence 999999999999999999999887766554443332 1 3789999999999987643 3456666665421
Q ss_pred --cccccccccccchhHHHHHHHHhCC
Q 043429 237 --NAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 237 --~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
.++++||++|+||+++|++|.+.+-
T Consensus 152 ~~~~~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 152 HWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred ceEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 3568999999999999999988653
No 126
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.83 E-value=9.7e-20 Score=173.07 Aligned_cols=156 Identities=21% Similarity=0.250 Sum_probs=116.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|++|+|||||+++|++..-. + ....|............++..+.+++|||||+.++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-----------~------~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~ 64 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFS-----------E------NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYR 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-----------C------CCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHH
Confidence 48999999999999999999873211 1 111133322223333444557889999999999998
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc----CCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCccccc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTNAI 239 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~----~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~i~ 239 (646)
..+..+++.+|++++|+|+++..+++....|...+.. ++|+++|+||+|+.... ..+....+....+ .+++
T Consensus 65 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~ 141 (163)
T cd01860 65 SLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENG---LLFF 141 (163)
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcC---CEEE
Confidence 8888899999999999999998888777777665542 57899999999987432 2223334444444 3589
Q ss_pred ccccccccchhHHHHHHHHhCC
Q 043429 240 LCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 240 ~vSAk~g~GV~eLl~~I~~~ip 261 (646)
++||++|.|+++++++|++.+|
T Consensus 142 ~~Sa~~~~~v~~l~~~l~~~l~ 163 (163)
T cd01860 142 ETSAKTGENVNELFTEIAKKLP 163 (163)
T ss_pred EEECCCCCCHHHHHHHHHHHhC
Confidence 9999999999999999998874
No 127
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.83 E-value=1e-19 Score=174.71 Aligned_cols=156 Identities=21% Similarity=0.219 Sum_probs=116.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..||+++|++|+|||||+++++...... . ...|+........+..++....+++|||||+++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~---------------~--~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 66 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQP---------------V--HDLTIGVEFGARMITIDGKQIKLQIWDTAGQESF 66 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC---------------C--CCCccceeEEEEEEEECCEEEEEEEEECCCcHHH
Confidence 4699999999999999999997632111 0 0012222222233334445678999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc----CCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcccc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~----~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~i 238 (646)
......+++.+|++++|+|+++..+++.+..|...+.. +.|+++|+||+|+.... ..+....+....+ .++
T Consensus 67 ~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~ 143 (168)
T cd01866 67 RSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHG---LIF 143 (168)
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcC---CEE
Confidence 88888999999999999999999999999888876643 68999999999987432 1222333434344 358
Q ss_pred cccccccccchhHHHHHHHHhC
Q 043429 239 ILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++||++|.|++++|+++.+.+
T Consensus 144 ~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 144 METSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998765
No 128
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.83 E-value=2.1e-20 Score=156.93 Aligned_cols=78 Identities=27% Similarity=0.490 Sum_probs=74.9
Q ss_pred ccEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeec
Q 043429 447 EPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKES 525 (646)
Q Consensus 447 EP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~ 525 (646)
|||+.++|.+|++|+|+||++|++|||++.+++..+++++.|+|++|++|+ +||.++|||+|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~i~~~~P~~~~-~~~~~~Lrs~T~G~a~~~~~f~~y~~~ 78 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGL-IGFRSEFLTDTRGTGIMNHVFDGYEPY 78 (79)
T ss_pred CCEEEEEEEeCchhhHHHHHHHHhCCCEEEccEECCCCEEEEEEEECHHHH-cCcHHHHHhhCCCeEEEEEEecccEec
Confidence 899999999999999999999999999999999876578999999999999 899999999999999999999999974
No 129
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.83 E-value=1.1e-19 Score=174.80 Aligned_cols=156 Identities=20% Similarity=0.224 Sum_probs=117.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|++|+|||||+++++... . ..+ ...|+........+..++..+.+++|||||+++|
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~--~-------------~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 64 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGR--F-------------PER--TEATIGVDFRERTVEIDGERIKVQLWDTAGQERF 64 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--C-------------CCc--cccceeEEEEEEEEEECCeEEEEEEEeCCChHHH
Confidence 4699999999999999999997621 1 111 1123333333333444556789999999999998
Q ss_pred h-hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcc
Q 043429 165 S-YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCT 236 (646)
Q Consensus 165 ~-~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~ 236 (646)
. ..+..+++.+|++++|+|++++.+++....|..... .++|+++|+||+|+.+.. ..+..+++.+..+ .
T Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~---~ 141 (170)
T cd04115 65 RKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHS---M 141 (170)
T ss_pred HHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcC---C
Confidence 7 457788899999999999999999999988876544 358999999999987543 2334445555544 4
Q ss_pred ccccccccc---ccchhHHHHHHHHhC
Q 043429 237 NAILCSAKE---GIGINEILNAIVKRI 260 (646)
Q Consensus 237 ~i~~vSAk~---g~GV~eLl~~I~~~i 260 (646)
+++++||++ +.|++++|..+++.+
T Consensus 142 ~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 142 PLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred cEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 589999999 899999999998765
No 130
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.83 E-value=1.3e-19 Score=172.96 Aligned_cols=153 Identities=16% Similarity=0.160 Sum_probs=118.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
+|+++|++|+|||||+.+++... . ..+...|+........+...+..+.+++|||||+.+|..
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~--~---------------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 64 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNE--F---------------HSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQT 64 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC--C---------------CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHh
Confidence 79999999999999999997621 1 111223444443333444455568899999999999998
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcccccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTNAIL 240 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~i~~ 240 (646)
.+..+++.+|++++|+|.++..+++.+..|...+. .++|+++|+||+|+.... ..+....+.+.++ .++++
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~---~~~~e 141 (161)
T cd04117 65 ITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYG---MDFFE 141 (161)
T ss_pred hHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcC---CEEEE
Confidence 88899999999999999999989988888876543 268999999999986544 2344555655555 35899
Q ss_pred cccccccchhHHHHHHHHh
Q 043429 241 CSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 241 vSAk~g~GV~eLl~~I~~~ 259 (646)
+||++|.||+++|++|.+.
T Consensus 142 ~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 142 TSACTNSNIKESFTRLTEL 160 (161)
T ss_pred EeCCCCCCHHHHHHHHHhh
Confidence 9999999999999999864
No 131
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.83 E-value=6.7e-20 Score=178.87 Aligned_cols=154 Identities=16% Similarity=0.248 Sum_probs=114.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
||+++|..|+|||||+.+++... +.+ +.-.|+........+..++..+.+++|||+|+..|..
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~-----------f~~------~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~ 64 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGE-----------FDE------DYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFIN 64 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-----------CCC------CCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHH
Confidence 79999999999999999998721 111 1122444444333444555678999999999999999
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc----CCCeEEEEeccCCCCCC----c---hHHHHHHHHHhCCCc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPGAE----P---SRVAREIEEVIGLDC 235 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~----~~piIvViNKiDl~~~~----~---~~~~~el~~~l~~~~ 235 (646)
.+..+++.+|++++|+|+++..+++.+..|...... +.| ++|+||+|+.... . .+..+++.+.++
T Consensus 65 ~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--- 140 (182)
T cd04128 65 MLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK--- 140 (182)
T ss_pred hhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC---
Confidence 888999999999999999999999988888766543 455 6889999985321 1 112223444444
Q ss_pred ccccccccccccchhHHHHHHHHhCC
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
.+++++||++|.|++++|+++.+.+.
T Consensus 141 ~~~~e~SAk~g~~v~~lf~~l~~~l~ 166 (182)
T cd04128 141 APLIFCSTSHSINVQKIFKIVLAKAF 166 (182)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998664
No 132
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.82 E-value=1.6e-19 Score=171.87 Aligned_cols=154 Identities=23% Similarity=0.285 Sum_probs=113.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|.+|+|||||+++++... .. +.+. .|+. .........++..+.++||||||++.|.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~--~~---------~~~~------~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 63 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGT--FI---------EKYD------PTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFA 63 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CC---------CCCC------Cchh-heEEEEEEECCEEEEEEEEECCCccccc
Confidence 389999999999999999998621 11 1110 1211 1111223334446788999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCCc--hHHHHHHHHHhCCCcccc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAEP--SRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~~--~~~~~el~~~l~~~~~~i 238 (646)
..+..+++.+|++++|+|.++..+++....|...+. .++|+++|+||+|+..... ......+.+.++. ++
T Consensus 64 ~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~ 140 (163)
T cd04176 64 SMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGC---PF 140 (163)
T ss_pred chHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCC---EE
Confidence 999999999999999999999888888877766554 4799999999999864321 2223445444543 58
Q ss_pred cccccccccchhHHHHHHHHhC
Q 043429 239 ILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++||++|.|++++++++++.+
T Consensus 141 ~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 141 METSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred EEecCCCCCCHHHHHHHHHHhc
Confidence 9999999999999999998765
No 133
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.82 E-value=9.4e-20 Score=175.82 Aligned_cols=149 Identities=25% Similarity=0.328 Sum_probs=109.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|++|+|||||+++|.... . .. .+ .|+......+.+. ++.+++|||||+..|
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~--~----------~~--~~----~t~g~~~~~~~~~----~~~l~l~D~~G~~~~ 71 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGED--I----------DT--IS----PTLGFQIKTLEYE----GYKLNIWDVGGQKTL 71 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCC--C----------CC--cC----CccccceEEEEEC----CEEEEEEECCCCHHH
Confidence 3689999999999999999997621 0 00 11 1222222233332 688999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHH-----HcCCCeEEEEeccCCCCCCchHHHHHHHHHhCC-----C
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-----ENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL-----D 234 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~-----~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~-----~ 234 (646)
...+..+++.+|++++|+|+++..+++....|.... ..+.|+++|+||+|+.+.... +++.+.++. .
T Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~ 148 (173)
T cd04154 72 RPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSE---EEIREALELDKISSH 148 (173)
T ss_pred HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCH---HHHHHHhCccccCCC
Confidence 888899999999999999999987666554444332 257899999999999765432 233333322 2
Q ss_pred cccccccccccccchhHHHHHHHH
Q 043429 235 CTNAILCSAKEGIGINEILNAIVK 258 (646)
Q Consensus 235 ~~~i~~vSAk~g~GV~eLl~~I~~ 258 (646)
..+++++||++|.|++++++++++
T Consensus 149 ~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 149 HWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred ceEEEeccCCCCcCHHHHHHHHhc
Confidence 347999999999999999999864
No 134
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.82 E-value=8.6e-20 Score=173.08 Aligned_cols=154 Identities=19% Similarity=0.251 Sum_probs=115.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.||+++|++|+|||||+++|+.... ..+...+++.+.....+ ..++..+.+++|||||+..+.
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~---------------~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~D~~G~~~~~ 63 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTF---------------DNQYQATIGIDFLSKTM--YLEDKTVRLQLWDTAGQERFR 63 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC---------------CccCCCceeeeEEEEEE--EECCEEEEEEEEECCCcHHHH
Confidence 3899999999999999999986321 11223333433333333 333445789999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH--c--CCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCccccc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--N--NLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTNAI 239 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~--~--~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~i~ 239 (646)
..+..+++.+|++++|+|++++.+++....|..... . +.|+++|+||+|+.... ..+....+.+..+ .+++
T Consensus 64 ~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~ 140 (161)
T cd01861 64 SLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELN---AMFI 140 (161)
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhC---CEEE
Confidence 989999999999999999999988888888876653 2 48999999999995432 2222334444444 4589
Q ss_pred ccccccccchhHHHHHHHHh
Q 043429 240 LCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 240 ~vSAk~g~GV~eLl~~I~~~ 259 (646)
++||++|.|+++++++|.+.
T Consensus 141 ~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 141 ETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred EEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999999875
No 135
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.82 E-value=1.3e-19 Score=172.80 Aligned_cols=147 Identities=19% Similarity=0.233 Sum_probs=106.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
||+++|+.|+|||||++++.... +.. . ..|+......+.+ ..+.+++|||||+..|..
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~-----------~~~-~------~pt~g~~~~~~~~----~~~~~~l~D~~G~~~~~~ 59 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGE-----------IVT-T------IPTIGFNVETVEY----KNISFTVWDVGGQDKIRP 59 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-----------Ccc-c------CCCCCcceEEEEE----CCEEEEEEECCCCHhHHH
Confidence 79999999999999999996421 111 0 1133322222333 378899999999999998
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHH-H----cCCCeEEEEeccCCCCCCchHHHHHHHHHhCCC-----cc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLD-----CT 236 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~-~----~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~-----~~ 236 (646)
.+..+++.||++|+|+|+++..++.....|...+ . .+.|+++|+||+|+.+.... +++.+.++.. ..
T Consensus 60 ~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~ 136 (159)
T cd04150 60 LWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSA---AEVTDKLGLHSLRNRNW 136 (159)
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCH---HHHHHHhCccccCCCCE
Confidence 9999999999999999999877666655544333 2 25899999999999764332 2333333332 22
Q ss_pred cccccccccccchhHHHHHHHH
Q 043429 237 NAILCSAKEGIGINEILNAIVK 258 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~ 258 (646)
.++++||++|.||+++|++|.+
T Consensus 137 ~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 137 YIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred EEEEeeCCCCCCHHHHHHHHhc
Confidence 4678999999999999999864
No 136
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.82 E-value=9.9e-20 Score=178.83 Aligned_cols=158 Identities=15% Similarity=0.188 Sum_probs=118.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
+|+++|.+|+|||||++++....... .+...|+........+..++..+.++||||||+.+|..
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 65 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLN----------------GNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRS 65 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc----------------cCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHH
Confidence 79999999999999999997622110 01111333333322333445568899999999999988
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcccccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTNAIL 240 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~i~~ 240 (646)
.+..+++.+|++|+|+|+++..+++....|...+. .++|+++|+||+|+...+ ..+..+.+.+.++. ++++
T Consensus 66 ~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~---~~~e 142 (191)
T cd04112 66 VTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGV---PFME 142 (191)
T ss_pred hhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCC---eEEE
Confidence 88889999999999999999888887777766554 368999999999986432 23334455555554 5999
Q ss_pred cccccccchhHHHHHHHHhCCCC
Q 043429 241 CSAKEGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 241 vSAk~g~GV~eLl~~I~~~ip~P 263 (646)
+||++|.|++++|++|++.++..
T Consensus 143 ~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 143 TSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999887543
No 137
>PLN03110 Rab GTPase; Provisional
Probab=99.82 E-value=1.6e-19 Score=181.10 Aligned_cols=160 Identities=21% Similarity=0.217 Sum_probs=123.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
+...+|+++|++|+|||||+++|++.... . +...|+........+..++..+.++||||||++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~---------------~--~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~ 72 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFC---------------L--ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCC---------------C--CCCCceeEEEEEEEEEECCEEEEEEEEECCCcH
Confidence 45679999999999999999999762110 1 112244444444444455567899999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCT 236 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~ 236 (646)
+|...+..+++.++++|+|+|+++..+++.+..|...+. .++|+++|+||+|+.+.. ..+....+.+..+ .
T Consensus 73 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~---~ 149 (216)
T PLN03110 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEG---L 149 (216)
T ss_pred HHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcC---C
Confidence 999999999999999999999999989988888876554 378999999999986532 2334445555444 3
Q ss_pred cccccccccccchhHHHHHHHHhCCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+++++||++|.|++++|++|++.+..
T Consensus 150 ~~~e~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 150 SFLETSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 59999999999999999999887744
No 138
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.82 E-value=1.5e-19 Score=181.08 Aligned_cols=156 Identities=18% Similarity=0.216 Sum_probs=118.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecC-CCeEEEEEeCCCCccch
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFEN-EPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~-~~~~l~liDTPG~~df~ 165 (646)
+|+++|.+|+|||||+++|+... +.. ....|+..+.....+..++ ..+.++||||||+..|.
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~-----------~~~------~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~ 64 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEG-----------FGK------SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG 64 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC-----------CCC------CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH
Confidence 79999999999999999997621 111 1122444444433344433 46899999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc-------CCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-------NLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCT 236 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~-------~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~ 236 (646)
..+..+++.+|++|+|+|+++..+++.+..|...+.. +.|+++|+||+|+.... ..+..+++.+.++.
T Consensus 65 ~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~--- 141 (215)
T cd04109 65 KMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGM--- 141 (215)
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCC---
Confidence 9999999999999999999999888888888765542 35799999999996432 23334455555554
Q ss_pred cccccccccccchhHHHHHHHHhCCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+++++||++|.||+++|++|++.+..
T Consensus 142 ~~~~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 142 ESCLVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999987643
No 139
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.82 E-value=1.3e-19 Score=177.76 Aligned_cols=160 Identities=18% Similarity=0.163 Sum_probs=115.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
++|+++|++|+|||||+++|+.... .+.+ ..|+..... .....++..+.++||||||+++|.
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~-----------~~~~------~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~ 62 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYF-----------PQVY------EPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFD 62 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-----------CCcc------CCcceeeeE-EEEEECCEEEEEEEEECCCChhcc
Confidence 5899999999999999999976211 1111 112222211 122234456889999999999998
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHH-HHHHHHH---cCCCeEEEEeccCCCCCCchH--------------HHHHH
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLALE---NNLEIIPVLNKIDLPGAEPSR--------------VAREI 227 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~-~~~~~~~---~~~piIvViNKiDl~~~~~~~--------------~~~el 227 (646)
..+..+++.+|++++|+|.++..+++... .|...+. .+.|+++|+||+|+....... ...++
T Consensus 63 ~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 142 (189)
T cd04134 63 RLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAV 142 (189)
T ss_pred ccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHH
Confidence 88888999999999999999999998875 4655443 378999999999997643211 11122
Q ss_pred HHHhCCCcccccccccccccchhHHHHHHHHhCCCCCC
Q 043429 228 EEVIGLDCTNAILCSAKEGIGINEILNAIVKRIPPPSN 265 (646)
Q Consensus 228 ~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P~~ 265 (646)
.+..+ ..+++++||++|.||+++|+++.+.+..|..
T Consensus 143 ~~~~~--~~~~~e~SAk~~~~v~e~f~~l~~~~~~~~~ 178 (189)
T cd04134 143 AKRIN--ALRYLECSAKLNRGVNEAFTEAARVALNVRP 178 (189)
T ss_pred HHHcC--CCEEEEccCCcCCCHHHHHHHHHHHHhcccc
Confidence 22222 2468999999999999999999988866543
No 140
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.82 E-value=2.5e-19 Score=171.32 Aligned_cols=153 Identities=18% Similarity=0.161 Sum_probs=110.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|++|+|||||+++++.... . .. .-.|+... .......+...+.+++|||||+.+|.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f--~---------~~------~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~ 63 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF--R---------ES------YIPTIEDT-YRQVISCSKNICTLQITDTTGSHQFP 63 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--C---------CC------cCCcchhe-EEEEEEECCEEEEEEEEECCCCCcch
Confidence 4799999999999999999986321 0 00 00111111 11112223346889999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-------cCCCeEEEEeccCCCCCCc--hHHHHHHHHHhCCCcc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-------NNLEIIPVLNKIDLPGAEP--SRVAREIEEVIGLDCT 236 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-------~~~piIvViNKiDl~~~~~--~~~~~el~~~l~~~~~ 236 (646)
.....+++.+|++|+|+|.++..+++....|...+. .++|+++|+||+|+..... ......+...++ .
T Consensus 64 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~---~ 140 (165)
T cd04140 64 AMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWN---C 140 (165)
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhC---C
Confidence 888889999999999999999998888777765443 3689999999999965322 222223333333 3
Q ss_pred cccccccccccchhHHHHHHHHh
Q 043429 237 NAILCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ 259 (646)
+++++||++|.|++++|++|++.
T Consensus 141 ~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 141 AFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred cEEEeecCCCCCHHHHHHHHHhc
Confidence 58999999999999999999753
No 141
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.82 E-value=2.1e-19 Score=172.16 Aligned_cols=155 Identities=19% Similarity=0.214 Sum_probs=113.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
+|+++|++|+|||||+++|+..... . ....|+........+...+..+.+++|||||+..|..
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~---------------~--~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 64 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFS---------------N--QYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQS 64 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC---------------c--CcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHh
Confidence 7999999999999999999773211 0 0111222222223333445567899999999999999
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH--------cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--------NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCT 236 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~--------~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~ 236 (646)
.+..+++.+|++|+|+|++++.+++....|..... .++|+++|+||+|+...+ ..+..+.+.+..+. .
T Consensus 65 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~ 142 (172)
T cd01862 65 LGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGN--I 142 (172)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCC--c
Confidence 89999999999999999999887777766654321 278999999999997422 23333444444442 3
Q ss_pred cccccccccccchhHHHHHHHHhC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++++||++|.|+++++++|.+.+
T Consensus 143 ~~~~~Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 143 PYFETSAKEAINVEQAFETIARKA 166 (172)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 699999999999999999998764
No 142
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.82 E-value=2.7e-19 Score=170.35 Aligned_cols=156 Identities=16% Similarity=0.169 Sum_probs=114.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEe-cCCCeEEEEEeCCCCccch
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVF-ENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~-~~~~~~l~liDTPG~~df~ 165 (646)
+|+++|.+|+|||||+++|........ .+.-.|+........+.. .+..+.+++|||||+..+.
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 66 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFP---------------KNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYS 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcC---------------ccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHH
Confidence 799999999999999999976211111 111123333322222333 3456899999999999998
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH---cCCCeEEEEeccCCCCCCc--hHHHHHHHHHhCCCcccccc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NNLEIIPVLNKIDLPGAEP--SRVAREIEEVIGLDCTNAIL 240 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~---~~~piIvViNKiDl~~~~~--~~~~~el~~~l~~~~~~i~~ 240 (646)
..+..+++.+|++++|+|+++..++.....|..... .+.|+++|+||+|+..... ....+.+...++. ++++
T Consensus 67 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~ 143 (164)
T cd04101 67 DMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQL---KFFK 143 (164)
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCC---eEEE
Confidence 888999999999999999999888887778876654 3589999999999865431 2222334444443 5899
Q ss_pred cccccccchhHHHHHHHHhC
Q 043429 241 CSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 241 vSAk~g~GV~eLl~~I~~~i 260 (646)
+||++|.|++++++.+.+.+
T Consensus 144 ~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 144 TSALRGVGYEEPFESLARAF 163 (164)
T ss_pred EeCCCCCChHHHHHHHHHHh
Confidence 99999999999999998754
No 143
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.82 E-value=1.6e-19 Score=171.35 Aligned_cols=147 Identities=22% Similarity=0.264 Sum_probs=105.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
||+++|++|+|||||+++|...... +. . .|+......+.+ .+..+++|||||+.+|..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-----------~~---~----~t~~~~~~~~~~----~~~~~~i~Dt~G~~~~~~ 58 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-----------TT---I----PTIGFNVETVTY----KNLKFQVWDLGGQTSIRP 58 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-----------Cc---C----CccCcCeEEEEE----CCEEEEEEECCCCHHHHH
Confidence 5899999999999999999652110 10 0 133333223333 368899999999999999
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHH-HHH----cCCCeEEEEeccCCCCCCchHHHHHHHHHhCCC-----cc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYL-ALE----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLD-----CT 236 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~-~~~----~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~-----~~ 236 (646)
.+..++..+|++|+|+|+++..+......+.. ..+ .+.|+++|+||+|+.++... .++.+.++.. ..
T Consensus 59 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~---~~i~~~~~~~~~~~~~~ 135 (158)
T cd04151 59 YWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSE---AEISEKLGLSELKDRTW 135 (158)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCH---HHHHHHhCccccCCCcE
Confidence 89999999999999999998765544333332 222 37899999999999765422 2233333322 13
Q ss_pred cccccccccccchhHHHHHHHH
Q 043429 237 NAILCSAKEGIGINEILNAIVK 258 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~ 258 (646)
+++++||++|.|+++++++|.+
T Consensus 136 ~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 136 SIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred EEEEeeccCCCCHHHHHHHHhc
Confidence 5999999999999999999875
No 144
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.82 E-value=1.6e-19 Score=173.85 Aligned_cols=148 Identities=20% Similarity=0.212 Sum_probs=107.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|++|+|||||+++|.... +.. . ..|+........+ ..+.+++|||||+.++.
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~~~-----------~~~---~----~~t~g~~~~~~~~----~~~~~~l~Dt~G~~~~~ 67 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQ-----------SVT---T----IPTVGFNVETVTY----KNVKFNVWDVGGQDKIR 67 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHccCC-----------Ccc---c----cCCcccceEEEEE----CCEEEEEEECCCCHHHH
Confidence 599999999999999999996421 101 0 1122222222222 37899999999999998
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHH-H----cCCCeEEEEeccCCCCCCchHHHHHHHHHhCCC-----c
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLD-----C 235 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~-~----~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~-----~ 235 (646)
..+..+++.||++|+|+|+++..++.....|.... . .+.|+++|+||+|+.+.... +++.+.++.. .
T Consensus 68 ~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~ 144 (168)
T cd04149 68 PLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKP---HEIQEKLGLTRIRDRN 144 (168)
T ss_pred HHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCH---HHHHHHcCCCccCCCc
Confidence 88889999999999999999977776665544332 2 36899999999999754322 3344433321 1
Q ss_pred ccccccccccccchhHHHHHHHH
Q 043429 236 TNAILCSAKEGIGINEILNAIVK 258 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~ 258 (646)
.+++++||++|.|++++|++|.+
T Consensus 145 ~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 145 WYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EEEEEeeCCCCCChHHHHHHHhc
Confidence 25789999999999999999865
No 145
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.82 E-value=2.2e-19 Score=173.88 Aligned_cols=154 Identities=18% Similarity=0.205 Sum_probs=112.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|..|+|||||+.+++... . .+ +...|+.. .....+..++..+.+++|||||+.+|.
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~--f---------~~------~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 63 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNA--F---------PG------EYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYD 63 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--C---------CC------cCCCccee-eeEEEEEECCEEEEEEEEECCCchhhh
Confidence 489999999999999999998621 1 11 11112221 112233344556889999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHH-HHHHHHH---cCCCeEEEEeccCCCCCC--------------chHHHHHH
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLALE---NNLEIIPVLNKIDLPGAE--------------PSRVAREI 227 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~-~~~~~~~---~~~piIvViNKiDl~~~~--------------~~~~~~el 227 (646)
..+..+++.+|++|+|+|+++..+++.+. .|...+. .++|+++|+||+|+.... ..+...++
T Consensus 64 ~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 143 (174)
T cd01871 64 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 143 (174)
T ss_pred hhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHH
Confidence 88888999999999999999999998875 5655444 368999999999996431 11222334
Q ss_pred HHHhCCCcccccccccccccchhHHHHHHHHh
Q 043429 228 EEVIGLDCTNAILCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 228 ~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ 259 (646)
.+.++ ..+++++||++|.|++++|+.+++.
T Consensus 144 ~~~~~--~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 144 AKEIG--AVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred HHHcC--CcEEEEecccccCCHHHHHHHHHHh
Confidence 44443 2368999999999999999999764
No 146
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.82 E-value=2.2e-19 Score=174.02 Aligned_cols=154 Identities=15% Similarity=0.191 Sum_probs=112.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.||+++|..|+|||||+.+++... +.+. ...|+.... ......++..+.++||||||+++|.
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~-----------f~~~------~~pt~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~ 63 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK-----------FPSE------YVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYD 63 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-----------CCCC------CCCceeeee-EEEEEECCEEEEEEEEECCCccchh
Confidence 589999999999999999998621 1111 112332222 1223344556899999999999998
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHH-HHHHHHH---cCCCeEEEEeccCCCCCCc--------------hHHHHHH
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLALE---NNLEIIPVLNKIDLPGAEP--------------SRVAREI 227 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~-~~~~~~~---~~~piIvViNKiDl~~~~~--------------~~~~~el 227 (646)
..+..+++.+|++|+|+|.++..+++... .|...+. .++|+++|+||+|+..... .+..+++
T Consensus 64 ~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~ 143 (175)
T cd01874 64 RLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKL 143 (175)
T ss_pred hhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHH
Confidence 88888999999999999999999998885 4765554 3689999999999864311 1112223
Q ss_pred HHHhCCCcccccccccccccchhHHHHHHHHh
Q 043429 228 EEVIGLDCTNAILCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 228 ~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ 259 (646)
.+.++ ...++++||++|.|++++|+.+++.
T Consensus 144 a~~~~--~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 144 ARDLK--AVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred HHHhC--CcEEEEecCCCCCCHHHHHHHHHHH
Confidence 33333 2468999999999999999998864
No 147
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.81 E-value=2.4e-19 Score=174.41 Aligned_cols=154 Identities=15% Similarity=0.164 Sum_probs=115.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.||+++|+.|+|||||+.+++.... .. +.-.|+.... ...+..++..+.+++|||||++.|.
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f-----------~~------~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~ 63 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY-----------PE------TYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYD 63 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-----------CC------CcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhh
Confidence 3899999999999999999986311 01 1112333222 2234455667899999999999998
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhH-HHHHHHHH---cCCCeEEEEeccCCCCC--------------CchHHHHHH
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE---NNLEIIPVLNKIDLPGA--------------EPSRVAREI 227 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~-~~~~~~~~---~~~piIvViNKiDl~~~--------------~~~~~~~el 227 (646)
.....+++.+|++|+|+|.++..+++.+ ..|...+. .+.|+++|+||+|+... ...+..+++
T Consensus 64 ~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~ 143 (178)
T cd04131 64 NVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAI 143 (178)
T ss_pred hcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHH
Confidence 8888899999999999999999999885 67876554 37889999999998541 123344566
Q ss_pred HHHhCCCcccccccccccccc-hhHHHHHHHHh
Q 043429 228 EEVIGLDCTNAILCSAKEGIG-INEILNAIVKR 259 (646)
Q Consensus 228 ~~~l~~~~~~i~~vSAk~g~G-V~eLl~~I~~~ 259 (646)
.+.++. .+++++||++|+| |+++|+.+++.
T Consensus 144 a~~~~~--~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 144 AKQLGA--EIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HHHhCC--CEEEECccCcCCcCHHHHHHHHHHH
Confidence 666653 2589999999995 99999998873
No 148
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.81 E-value=2.5e-19 Score=181.01 Aligned_cols=156 Identities=16% Similarity=0.160 Sum_probs=118.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|+.|+|||||+.+|+... +.+. ...|+.... ...+..++..+.++||||+|+++|
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~-----------F~~~------y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~ 74 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDC-----------YPET------YVPTVFENY-TAGLETEEQRVELSLWDTSGSPYY 74 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCC-----------CCCC------cCCceeeee-EEEEEECCEEEEEEEEeCCCchhh
Confidence 3589999999999999999997621 1111 112333222 223445566789999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhh-HHHHHHHHH---cCCCeEEEEeccCCCCC--------------CchHHHHH
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQT-LANVYLALE---NNLEIIPVLNKIDLPGA--------------EPSRVARE 226 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt-~~~~~~~~~---~~~piIvViNKiDl~~~--------------~~~~~~~e 226 (646)
......+++.+|++|+|+|+++..+++. ...|...+. .+.|+++|+||+|+... ...+..++
T Consensus 75 ~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~ 154 (232)
T cd04174 75 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCA 154 (232)
T ss_pred HHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHH
Confidence 9988899999999999999999999987 467776654 36889999999998631 12334556
Q ss_pred HHHHhCCCccccccccccccc-chhHHHHHHHHhC
Q 043429 227 IEEVIGLDCTNAILCSAKEGI-GINEILNAIVKRI 260 (646)
Q Consensus 227 l~~~l~~~~~~i~~vSAk~g~-GV~eLl~~I~~~i 260 (646)
+.+.++.. .+++|||++|. ||+++|+.++..+
T Consensus 155 ~a~~~~~~--~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 155 LAKQLGAE--VYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred HHHHcCCC--EEEEccCCcCCcCHHHHHHHHHHHH
Confidence 66666642 48999999998 8999999987654
No 149
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.81 E-value=1.8e-19 Score=169.50 Aligned_cols=149 Identities=26% Similarity=0.300 Sum_probs=109.5
Q ss_pred EEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh--
Q 043429 89 SIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY-- 166 (646)
Q Consensus 89 ~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~-- 166 (646)
+++|++|+|||||+++|+..... ..+...++|.........+. ++.+.+|||||+.++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~--------------~~~~~~~~t~~~~~~~~~~~----~~~~~i~DtpG~~~~~~~~ 62 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA--------------IVEDTPGVTRDRIYGEAEWG----GREFILIDTGGIEPDDEGI 62 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE--------------eecCCCCceeCceeEEEEEC----CeEEEEEECCCCCCchhHH
Confidence 47999999999999999863111 01223455555444444443 68899999999998654
Q ss_pred ------hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcccccc
Q 043429 167 ------EVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAIL 240 (646)
Q Consensus 167 ------~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~~ 240 (646)
.+...++.+|++++|+|+.++.+..+...+..+...+.|+++|+||+|+...... .+.+ ..++. .++++
T Consensus 63 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~--~~~~-~~~~~--~~~~~ 137 (157)
T cd01894 63 SKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE--AAEF-YSLGF--GEPIP 137 (157)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH--HHHH-HhcCC--CCeEE
Confidence 4456788899999999999887777766556666678999999999999765432 2222 22333 35899
Q ss_pred cccccccchhHHHHHHHHhC
Q 043429 241 CSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 241 vSAk~g~GV~eLl~~I~~~i 260 (646)
+||++|.|+++++++|++++
T Consensus 138 ~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 138 ISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred EecccCCCHHHHHHHHHhhC
Confidence 99999999999999998764
No 150
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.81 E-value=3.1e-19 Score=179.16 Aligned_cols=152 Identities=20% Similarity=0.261 Sum_probs=113.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
+|+|+|.+|+|||||+++|+... +.+ ...|+........+. .+.+++|||||++.|..
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~-----------f~~-------~~~Tig~~~~~~~~~----~~~l~iwDt~G~e~~~~ 59 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERR-----------FKD-------TVSTVGGAFYLKQWG----PYNISIWDTAGREQFHG 59 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC-----------CCC-------CCCccceEEEEEEee----EEEEEEEeCCCcccchh
Confidence 79999999999999999998621 101 112444333333333 68899999999999999
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCC-------------------C--ch
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGA-------------------E--PS 221 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~-------------------~--~~ 221 (646)
....+++.+|++|+|+|+++..+++.+..|+..+. .++|+|+|+||+|+.+. + ..
T Consensus 60 l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~ 139 (220)
T cd04126 60 LGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTL 139 (220)
T ss_pred hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCH
Confidence 99999999999999999999999988877665443 35889999999998651 1 12
Q ss_pred HHHHHHHHHhCC-----------CcccccccccccccchhHHHHHHHHhC
Q 043429 222 RVAREIEEVIGL-----------DCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 222 ~~~~el~~~l~~-----------~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+...++.+.++. ...+++++||++|.||+++|+.+++.+
T Consensus 140 ~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~ 189 (220)
T cd04126 140 EDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred HHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 233344444431 124689999999999999999998765
No 151
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.81 E-value=3.4e-19 Score=168.50 Aligned_cols=154 Identities=23% Similarity=0.281 Sum_probs=113.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
||+++|.+|+|||||+++|+...... ...+ |.........+...+..+.+++|||||+..+..
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~---------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 64 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNE---------------KHES--TTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA 64 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC---------------CcCC--ccceeEEEEEEEECCEEEEEEEEECCchHHHHH
Confidence 79999999999999999998732111 0011 222222222233334467899999999999988
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCCc--hHHHHHHHHHhCCCcccccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAEP--SRVAREIEEVIGLDCTNAIL 240 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~~--~~~~~el~~~l~~~~~~i~~ 240 (646)
.+..+++.+|++++|+|++++.+++....|...+. .++|+++|+||+|+..... .+...++.+.++. ++++
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~~ 141 (162)
T cd04123 65 LGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGA---KHFE 141 (162)
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCC---EEEE
Confidence 88889999999999999999988888877766554 2689999999999875432 2333444444443 4899
Q ss_pred cccccccchhHHHHHHHHhC
Q 043429 241 CSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 241 vSAk~g~GV~eLl~~I~~~i 260 (646)
+||++|.|++++++++.+.+
T Consensus 142 ~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 142 TSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred EeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999998754
No 152
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.81 E-value=2.6e-19 Score=172.47 Aligned_cols=161 Identities=22% Similarity=0.165 Sum_probs=117.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
++.||+++|.+|+|||||+++++...... +.+ -.|+...........++..+.+++|||+|...
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~----------~~~------~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 66 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSL----------NAY------SPTIKPRYAVNTVEVYGQEKYLILREVGEDEV 66 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCc----------ccC------CCccCcceEEEEEEECCeEEEEEEEecCCccc
Confidence 56899999999999999999998632110 111 11333222222223345567899999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH--cCCCeEEEEeccCCCCCCc--hHHHHHHHHHhCCCccccc
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--NNLEIIPVLNKIDLPGAEP--SRVAREIEEVIGLDCTNAI 239 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~--~~~piIvViNKiDl~~~~~--~~~~~el~~~l~~~~~~i~ 239 (646)
+......+++.+|++++|+|+++..+++....|..... .++|+++|+||+|+.+... ....+++.+.++.. +++
T Consensus 67 ~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~ 144 (169)
T cd01892 67 AILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP--PPL 144 (169)
T ss_pred ccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCC--CCE
Confidence 98888889999999999999999877777767665542 3799999999999864431 12235666666653 368
Q ss_pred ccccccccchhHHHHHHHHhCCC
Q 043429 240 LCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 240 ~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
++||++|.|++++|+.+.+.+-.
T Consensus 145 ~~Sa~~~~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 145 HFSSKLGDSSNELFTKLATAAQY 167 (169)
T ss_pred EEEeccCccHHHHHHHHHHHhhC
Confidence 99999999999999999987643
No 153
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.81 E-value=3.5e-19 Score=173.79 Aligned_cols=155 Identities=16% Similarity=0.130 Sum_probs=113.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEec-CCCeEEEEEeCCCCccch
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFE-NEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~-~~~~~l~liDTPG~~df~ 165 (646)
+|+++|+.|+|||||+++|+..... + ....|+...... ..... +..+.+.+|||||+++|.
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~-----------~------~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~ 63 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP-----------E------EYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYD 63 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC-----------C------CCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHH
Confidence 7999999999999999999862110 1 111133222221 12222 456789999999999998
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHH-HHHHHHH---cCCCeEEEEeccCCCCCC------chHHHHHHHHHhCCCc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLALE---NNLEIIPVLNKIDLPGAE------PSRVAREIEEVIGLDC 235 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~-~~~~~~~---~~~piIvViNKiDl~~~~------~~~~~~el~~~l~~~~ 235 (646)
.....+++.+|++++|+|+++..+++... .|..... .++|+++|+||+|+.... .....+++...++.
T Consensus 64 ~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~-- 141 (187)
T cd04132 64 RLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGA-- 141 (187)
T ss_pred HHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCC--
Confidence 88888999999999999999988888875 4655443 478999999999986532 12334445555554
Q ss_pred ccccccccccccchhHHHHHHHHhCC
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
.+++++||++|.|++++|+.+++.+.
T Consensus 142 ~~~~e~Sa~~~~~v~~~f~~l~~~~~ 167 (187)
T cd04132 142 FAYLECSAKTMENVEEVFDTAIEEAL 167 (187)
T ss_pred cEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 25899999999999999999988664
No 154
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.81 E-value=3.5e-19 Score=170.89 Aligned_cols=155 Identities=20% Similarity=0.256 Sum_probs=114.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
+|+++|.+|+|||||++++.+... .+.++. |+... .......++..+.+++|||||+.+|..
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~-----------~~~~~~------t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 64 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVF-----------IESYDP------TIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTA 64 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-----------CcccCC------cchhe-EEEEEEECCEEEEEEEEeCCCcccchh
Confidence 799999999999999999976321 111111 22211 112222334467899999999999999
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCCc--hHHHHHHHHHhCCCccccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAEP--SRVAREIEEVIGLDCTNAI 239 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~~--~~~~~el~~~l~~~~~~i~ 239 (646)
.+..+++.+|++++|+|.++..+.+....|..... .++|+++|+||+|+..... .+....+.+.++ ..+++
T Consensus 65 ~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~ 142 (168)
T cd04177 65 MRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWG--NVPFY 142 (168)
T ss_pred hhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcC--CceEE
Confidence 99999999999999999999888888877766553 3799999999999865432 222333444444 24699
Q ss_pred ccccccccchhHHHHHHHHhCC
Q 043429 240 LCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 240 ~vSAk~g~GV~eLl~~I~~~ip 261 (646)
++||++|.|++++|++++.++.
T Consensus 143 ~~SA~~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 143 ETSARKRTNVDEVFIDLVRQII 164 (168)
T ss_pred EeeCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999987653
No 155
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.81 E-value=2.7e-19 Score=174.61 Aligned_cols=158 Identities=15% Similarity=0.164 Sum_probs=110.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEe-cCCCeEEEEEeCCCCccc
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVF-ENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~-~~~~~~l~liDTPG~~df 164 (646)
.+|+++|++|+|||||+++++.... ... -.|+........... ++.++.+++|||||+++|
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~-----------~~~-------~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~ 65 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEF-----------VNT-------VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKL 65 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCc-----------CCc-------CCccccceeEEEeeccCCCceEEEEEECCCcHhH
Confidence 4799999999999999999976211 110 012222222222222 235689999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHH-----HcCCCeEEEEeccCCCCCCchHHHHHHHHHhCC---Ccc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-----ENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL---DCT 236 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~-----~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~---~~~ 236 (646)
...+..+++.+|++++|+|+++..+.+....|.... ..++|+++|+||+|+......+..+++...... ...
T Consensus 66 ~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (183)
T cd04152 66 RPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPW 145 (183)
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCce
Confidence 998999999999999999999876666555444322 247999999999998754332222222221111 123
Q ss_pred cccccccccccchhHHHHHHHHhCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+++++||++|.|+++++++|.+.+.
T Consensus 146 ~~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 146 HVQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred EEEEeecccCCCHHHHHHHHHHHHH
Confidence 5789999999999999999988763
No 156
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.81 E-value=2.1e-19 Score=171.63 Aligned_cols=153 Identities=18% Similarity=0.286 Sum_probs=110.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc-ch
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD-FS 165 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d-f~ 165 (646)
+|+++|++|+|||||+++++.... .+.+.. |.... ....+..++..+.+++|||||+.. +.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~-----------~~~~~~------t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~ 62 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF-----------IGEYDP------NLESL-YSRQVTIDGEQVSLEILDTAGQQQADT 62 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc-----------ccccCC------ChHHh-ceEEEEECCEEEEEEEEECCCCccccc
Confidence 589999999999999999986211 111111 11111 112223344467899999999985 45
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH------cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCccc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE------NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTN 237 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~------~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~ 237 (646)
....++++.+|++|+|+|++++.+++.+..|...+. .++|+++|+||+|+.... ..+...++.+.++. +
T Consensus 63 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~---~ 139 (165)
T cd04146 63 EQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGC---L 139 (165)
T ss_pred chHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCC---E
Confidence 667889999999999999999998888877765544 279999999999986432 22333445555553 5
Q ss_pred ccccccccc-cchhHHHHHHHHhC
Q 043429 238 AILCSAKEG-IGINEILNAIVKRI 260 (646)
Q Consensus 238 i~~vSAk~g-~GV~eLl~~I~~~i 260 (646)
++++||++| .||+++|+.+++.+
T Consensus 140 ~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 140 FFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred EEEeCCCCCchhHHHHHHHHHHHH
Confidence 899999999 59999999998764
No 157
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.81 E-value=2.6e-19 Score=171.16 Aligned_cols=153 Identities=25% Similarity=0.274 Sum_probs=100.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
++|+++|++|+|||||+++|+..... .+...+.|.........+. +..+++|||||+.+..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~---------------~~~~~~~t~~~~~~~~~~~----~~~~~i~Dt~G~~~~~ 61 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE---------------VAPYPFTTKSLFVGHFDYK----YLRWQVIDTPGLLDRP 61 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc---------------cCCCCCcccceeEEEEccC----ceEEEEEECCCcCCcc
Confidence 58999999999999999999863211 1122344544443333332 6899999999985421
Q ss_pred h--------hHhhhh-hhccceEEEEeCCCCccH--hhHHHHHHHH-Hc--CCCeEEEEeccCCCCCCchHHHHHHHHHh
Q 043429 166 Y--------EVSRSL-AACEGALLVVDASQGVEA--QTLANVYLAL-EN--NLEIIPVLNKIDLPGAEPSRVAREIEEVI 231 (646)
Q Consensus 166 ~--------~~~~~l-~~ad~~IlVvDa~~g~~~--qt~~~~~~~~-~~--~~piIvViNKiDl~~~~~~~~~~el~~~l 231 (646)
. .....+ ..+|++|+|+|+++.... .....|...+ .. +.|+++|+||+|+........ ..+..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~---~~~~~ 138 (168)
T cd01897 62 LEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE---IEEEE 138 (168)
T ss_pred ccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH---HHHhh
Confidence 1 111111 236899999999876432 3333344333 23 799999999999965432221 22223
Q ss_pred CCCcccccccccccccchhHHHHHHHHhC
Q 043429 232 GLDCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 232 ~~~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
.....+++++||++|.|++++++++.+.+
T Consensus 139 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 139 ELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred hhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 33445799999999999999999998764
No 158
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.81 E-value=1.3e-19 Score=163.25 Aligned_cols=158 Identities=23% Similarity=0.255 Sum_probs=128.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
...+.+|+|++|+|||+|+.++...+ | ....-.|++.++.-.....++..+++.||||+|++.
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddt-----------F------s~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqEr 69 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDT-----------F------SGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQER 69 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcc-----------c------ccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHH
Confidence 34678999999999999999996621 1 222334777776666666778899999999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcC---CCeEEEEeccCCCCCCchH--HHHHHHHHhCCCcccc
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENN---LEIIPVLNKIDLPGAEPSR--VAREIEEVIGLDCTNA 238 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~---~piIvViNKiDl~~~~~~~--~~~el~~~l~~~~~~i 238 (646)
|+..+..+++..+++++|+|.+++.++.....|...++.+ +|-++|+||.|.++..... ....+....|+ ..
T Consensus 70 Frtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgi---e~ 146 (198)
T KOG0079|consen 70 FRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGI---EL 146 (198)
T ss_pred HHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCc---hh
Confidence 9999999999999999999999999999999999999875 5689999999998765422 23334444455 48
Q ss_pred cccccccccchhHHHHHHHHhCC
Q 043429 239 ILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
|++|||...|++..|..|.+++.
T Consensus 147 FETSaKe~~NvE~mF~cit~qvl 169 (198)
T KOG0079|consen 147 FETSAKENENVEAMFHCITKQVL 169 (198)
T ss_pred eehhhhhcccchHHHHHHHHHHH
Confidence 99999999999999999887653
No 159
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.81 E-value=4.4e-19 Score=171.86 Aligned_cols=151 Identities=21% Similarity=0.215 Sum_probs=110.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|.+|+|||||++++.... +.+ . ..|+........+ ..+.+.+|||||+..|
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~-----------~~~-~------~~t~~~~~~~~~~----~~~~l~l~D~~G~~~~ 70 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGE-----------SVT-T------IPTIGFNVETVTY----KNISFTVWDVGGQDKI 70 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC-----------CCC-c------CCccccceEEEEE----CCEEEEEEECCCChhh
Confidence 3689999999999999999996411 101 0 1133333333333 3689999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHH-H----cCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCc----
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDC---- 235 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~-~----~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~---- 235 (646)
...+..+++.||++|+|+|+++..+......|.... . .+.|+++|+||+|+.+.... +++.+.++...
T Consensus 71 ~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~ 147 (175)
T smart00177 71 RPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKA---AEITEKLGLHSIRDR 147 (175)
T ss_pred HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCH---HHHHHHhCccccCCC
Confidence 999999999999999999999877666554444332 2 36899999999999765432 34444444331
Q ss_pred -ccccccccccccchhHHHHHHHHhC
Q 043429 236 -TNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 236 -~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
..++++||++|.|++++|+||.+.+
T Consensus 148 ~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 148 NWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred cEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 2466899999999999999998764
No 160
>PLN03108 Rab family protein; Provisional
Probab=99.81 E-value=4.6e-19 Score=176.98 Aligned_cols=159 Identities=23% Similarity=0.252 Sum_probs=119.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
+...||+|+|++|+|||||+++|+...... ....|+........+..++..+.+++|||||++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~-----------------~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~ 66 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-----------------VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCC-----------------CCCCCccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 456799999999999999999997631110 011133333222233344556789999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCT 236 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~ 236 (646)
+|...+..+++.+|++++|+|+++..+++.+..|...+. .++|+++|+||+|+.... ..+..+++.+.++.
T Consensus 67 ~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--- 143 (210)
T PLN03108 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL--- 143 (210)
T ss_pred HHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCC---
Confidence 999888999999999999999999888888877765443 368999999999997643 23334455555554
Q ss_pred cccccccccccchhHHHHHHHHhCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+++++||++|.||+++|+++++.+-
T Consensus 144 ~~~e~Sa~~~~~v~e~f~~l~~~~~ 168 (210)
T PLN03108 144 IFMEASAKTAQNVEEAFIKTAAKIY 168 (210)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5999999999999999999987763
No 161
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.81 E-value=4.2e-19 Score=173.72 Aligned_cols=155 Identities=24% Similarity=0.252 Sum_probs=116.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
+|+++|..|+|||||+++|+..... .. ...|+........+..++..+.+.+|||||+.+|..
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~-----------~~------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~ 64 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFS-----------ES------TKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRS 64 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-----------CC------CCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHh
Confidence 7999999999999999999762111 10 111222222222333444568899999999999999
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcccccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTNAIL 240 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~i~~ 240 (646)
.+..+++.+|++|+|+|+++..++..+..|..... .+.|+++|+||+|+.... ......++.+..+. ++++
T Consensus 65 ~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~---~~~e 141 (188)
T cd04125 65 LNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNI---PFFE 141 (188)
T ss_pred hHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCC---eEEE
Confidence 99999999999999999999988888888876654 257899999999987433 22333445554554 5899
Q ss_pred cccccccchhHHHHHHHHhCC
Q 043429 241 CSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 241 vSAk~g~GV~eLl~~I~~~ip 261 (646)
+||++|.|++++|+++++.+.
T Consensus 142 vSa~~~~~i~~~f~~l~~~~~ 162 (188)
T cd04125 142 TSAKQSINVEEAFILLVKLII 162 (188)
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 162
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=3.9e-19 Score=160.11 Aligned_cols=159 Identities=18% Similarity=0.246 Sum_probs=127.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
+...++.|+|...+|||||+-+.+..+.+.. .-+ |++..+.....-...+.+++++|||+|++
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~a-------------fvs----TvGidFKvKTvyr~~kRiklQiwDTagqE 81 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSA-------------FVS----TVGIDFKVKTVYRSDKRIKLQIWDTAGQE 81 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccc-------------eee----eeeeeEEEeEeeecccEEEEEEEecccch
Confidence 3457999999999999999999877433221 111 33333222222223457999999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCCc--hHHHHHHHHHhCCCcc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAEP--SRVAREIEEVIGLDCT 236 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~~--~~~~~el~~~l~~~~~ 236 (646)
.++..+..+++.++|+||++|.++..++..++.|...++ .+.|+|+|+||||+...+. .+...++.+.+|+.
T Consensus 82 ryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfe-- 159 (193)
T KOG0093|consen 82 RYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFE-- 159 (193)
T ss_pred hhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChH--
Confidence 999999999999999999999999999999999988876 4899999999999987653 45567888899985
Q ss_pred cccccccccccchhHHHHHHHHhCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+|++|||.+.||+++|+.++..+-
T Consensus 160 -fFEtSaK~NinVk~~Fe~lv~~Ic 183 (193)
T KOG0093|consen 160 -FFETSAKENINVKQVFERLVDIIC 183 (193)
T ss_pred -HhhhcccccccHHHHHHHHHHHHH
Confidence 899999999999999999987663
No 163
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.81 E-value=2.5e-19 Score=177.01 Aligned_cols=158 Identities=18% Similarity=0.200 Sum_probs=111.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
+|+++|++|+|||||+++|+..... .....|+. ......+...+..+.+++|||||+.+|..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~-----------------~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~ 62 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE-----------------PKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPA 62 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-----------------ccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhH
Confidence 5899999999999999999873210 00111221 11122333444457899999999999998
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCCchHHHHHHHHHhCC-Ccccccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL-DCTNAIL 240 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~~~~~~~el~~~l~~-~~~~i~~ 240 (646)
....++..+|++|+|+|++++.+++....|...+. .++|+++|+||+|+.........++..+.... ...++++
T Consensus 63 ~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~ 142 (198)
T cd04147 63 MRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVE 142 (198)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEE
Confidence 88889999999999999999888887777754432 47999999999998653211111111111111 1135899
Q ss_pred cccccccchhHHHHHHHHhCCC
Q 043429 241 CSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 241 vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+||++|.|+++++++|++.+..
T Consensus 143 ~Sa~~g~gv~~l~~~l~~~~~~ 164 (198)
T cd04147 143 TSAKDNENVLEVFKELLRQANL 164 (198)
T ss_pred ecCCCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999997753
No 164
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=2.3e-19 Score=162.44 Aligned_cols=159 Identities=21% Similarity=0.218 Sum_probs=124.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
+...+|.++|+.|.|||+|+.++++. ++-| ....|+...+.+......++.+++++|||+|++
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~-----------kfkD------dssHTiGveFgSrIinVGgK~vKLQIWDTAGQE 69 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIEN-----------KFKD------DSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQE 69 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHh-----------hhcc------cccceeeeeecceeeeecCcEEEEEEeecccHH
Confidence 45689999999999999999999883 2222 223477777777777777789999999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc----CCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcccc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~----~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i 238 (646)
+|......|++.+-|++||+|+++..++..+.+|....+. ++-+++++||-||...+.... .+..+...-+..-+
T Consensus 70 rFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~Vtf-lEAs~FaqEnel~f 148 (214)
T KOG0086|consen 70 RFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTF-LEASRFAQENELMF 148 (214)
T ss_pred HHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhH-HHHHhhhcccceee
Confidence 9999999999999999999999999999999999876653 666899999999976653322 22222222222247
Q ss_pred cccccccccchhHHHHHHHHh
Q 043429 239 ILCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~ 259 (646)
+++||++|+||+|.|-.....
T Consensus 149 lETSa~TGeNVEEaFl~c~~t 169 (214)
T KOG0086|consen 149 LETSALTGENVEEAFLKCART 169 (214)
T ss_pred eeecccccccHHHHHHHHHHH
Confidence 899999999999987655543
No 165
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.81 E-value=5.7e-19 Score=167.60 Aligned_cols=154 Identities=23% Similarity=0.250 Sum_probs=112.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
||+++|++|+|||||+++|+....... ..+..+.+.. ...+...+..+.+++|||||+..|..
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~-------------~~~~~~~~~~----~~~~~~~~~~~~~~l~D~~g~~~~~~ 64 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPD-------------LAATIGVDFK----VKTLTVDGKKVKLAIWDTAGQERFRT 64 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc-------------cCCcccceEE----EEEEEECCEEEEEEEEECCCchhhhh
Confidence 799999999999999999986321110 1111222211 11222334468899999999999988
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCC-chHHHHHHHHHhCCCcccccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAE-PSRVAREIEEVIGLDCTNAIL 240 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~-~~~~~~el~~~l~~~~~~i~~ 240 (646)
.....++.+|++++|+|+++..+++....|...+. .+.|+++|+||+|+.... ..+...++....+ .++++
T Consensus 65 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~ 141 (161)
T cd01863 65 LTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHN---MLFIE 141 (161)
T ss_pred hhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcC---CEEEE
Confidence 88889999999999999999888888877765543 378899999999997433 2223334444444 35999
Q ss_pred cccccccchhHHHHHHHHhC
Q 043429 241 CSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 241 vSAk~g~GV~eLl~~I~~~i 260 (646)
+||++|.|++++++.+.+.+
T Consensus 142 ~Sa~~~~gi~~~~~~~~~~~ 161 (161)
T cd01863 142 TSAKTRDGVQQAFEELVEKI 161 (161)
T ss_pred EecCCCCCHHHHHHHHHHhC
Confidence 99999999999999998753
No 166
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=6.5e-19 Score=178.76 Aligned_cols=182 Identities=27% Similarity=0.419 Sum_probs=147.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEe-----cCCCeEEEEEeCCC
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVF-----ENEPFCLNLIDTPG 160 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~-----~~~~~~l~liDTPG 160 (646)
.|++|+||+|+|||||+.+|..... +...|..+.+++||+|.+..+..+.... .++...++++|+||
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~S--------TaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPG 79 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGS--------TAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPG 79 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhcc--------chhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCC
Confidence 6999999999999999999977322 2334777888999999999888877653 24667889999999
Q ss_pred CccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC-----chHHHHHHHHHh---C
Q 043429 161 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE-----PSRVAREIEEVI---G 232 (646)
Q Consensus 161 ~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~-----~~~~~~el~~~l---~ 232 (646)
|......+.......|..++|+|+..|.+.||.+.+......-...++|+||+|....+ .++....+++.+ +
T Consensus 80 HasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461|consen 80 HASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred cHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence 98877777777777899999999999999999999888877777789999999964332 223333343333 4
Q ss_pred CCc-ccccccccccc----cchhHHHHHHHHhCCCCCCCCCCCceEEE
Q 043429 233 LDC-TNAILCSAKEG----IGINEILNAIVKRIPPPSNTAGCPFRALI 275 (646)
Q Consensus 233 ~~~-~~i~~vSAk~g----~GV~eLl~~I~~~ip~P~~~~~~pl~~~v 275 (646)
+.. .|++++||+.| +++.+|.+.|..++-.|.+++++||-+.|
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~~gpflm~v 207 (522)
T KOG0461|consen 160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDEEGPFLMAV 207 (522)
T ss_pred cCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCCCCCeEEEe
Confidence 444 68999999999 89999999999999999999999997766
No 167
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=99.80 E-value=7.5e-20 Score=157.27 Aligned_cols=88 Identities=32% Similarity=0.496 Sum_probs=80.1
Q ss_pred cccccEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEccee
Q 043429 444 SIEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYK 523 (646)
Q Consensus 444 ~llEP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~ 523 (646)
+|+|||++++|.+|++|+|+|+++|++|||++.++...+++++.|+|.+|++++ ++|..+|+++|+|+|+|+++|+||+
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~~~~~~~i~~~iP~~~~-~gf~~~Lr~~T~G~a~~~~~~~~y~ 79 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEILSMDPIGGDRVVIEAEIPVREL-FGFRSELRSLTSGRASFSMEFSGYR 79 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEESTTEEEEEEEEEGGGH-TTHHHHHHHHTTTS-EEEEEEEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEEEechhhhhhheeEEEEEChhhh-hhHHHHhhccCCCEEEEEEEECeeE
Confidence 489999999999999999999999999999999999875689999999999999 7999999999999999999999999
Q ss_pred eccceeeee
Q 043429 524 ESQLIKLDI 532 (646)
Q Consensus 524 ~~~~~k~~i 532 (646)
+....+++.
T Consensus 80 ~~~~~~~~~ 88 (89)
T PF00679_consen 80 PVPGDILDR 88 (89)
T ss_dssp EESHHHHHH
T ss_pred ECCCChhhc
Confidence 977665543
No 168
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.80 E-value=8.9e-20 Score=155.46 Aligned_cols=80 Identities=30% Similarity=0.524 Sum_probs=75.9
Q ss_pred ccccEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceee
Q 043429 445 IEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKE 524 (646)
Q Consensus 445 llEP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~ 524 (646)
++|||+.++|.+|++|+|+|+++|++|||++.+++..+ +++.|+|.+|++|+ +||.++||++|+|+|+|+++|+||++
T Consensus 1 llEPi~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~-~~~~i~~~iP~~~~-~~~~~~Lrs~T~G~~~~~~~f~~y~~ 78 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRG-GAQVIKAKVPLSEM-FGYATDLRSATQGRATWSMEFSHYEE 78 (85)
T ss_pred CcCCEEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccC-CcEEEEEECCHHHH-hchHHHHHHhcCCeEEEEEEeCcceE
Confidence 68999999999999999999999999999999998754 68999999999999 89999999999999999999999999
Q ss_pred cc
Q 043429 525 SQ 526 (646)
Q Consensus 525 ~~ 526 (646)
..
T Consensus 79 ~~ 80 (85)
T smart00838 79 VP 80 (85)
T ss_pred CC
Confidence 64
No 169
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.80 E-value=4.4e-19 Score=175.46 Aligned_cols=156 Identities=17% Similarity=0.151 Sum_probs=108.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
+|+|+|.+|+|||||+++++.... ...+ .+ |+...........++..+.++||||||+.+|..
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f-----------~~~~----~p--t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~ 64 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF-----------PEEY----IP--TEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPG 64 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC-----------Cccc----CC--ccccccceeEEEECCEEEEEEEEeCCCcccCCc
Confidence 799999999999999999986211 1111 11 222111111223345568899999999876531
Q ss_pred ----h----HhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-------cCCCeEEEEeccCCCCCCc--hHHHHHHHH
Q 043429 167 ----E----VSRSLAACEGALLVVDASQGVEAQTLANVYLALE-------NNLEIIPVLNKIDLPGAEP--SRVAREIEE 229 (646)
Q Consensus 167 ----~----~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-------~~~piIvViNKiDl~~~~~--~~~~~el~~ 229 (646)
+ ...+++.+|++|+|+|++++.+++....|...+. .++|+++|+||+|+..... .+..+++..
T Consensus 65 ~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~ 144 (198)
T cd04142 65 TAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR 144 (198)
T ss_pred cchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH
Confidence 2 3346789999999999999988888877765432 4689999999999965432 222233322
Q ss_pred -HhCCCcccccccccccccchhHHHHHHHHhCCC
Q 043429 230 -VIGLDCTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 230 -~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
.++ .+++++||++|.||+++|+.+++.+-.
T Consensus 145 ~~~~---~~~~e~Sak~g~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 145 KSWK---CGYLECSAKYNWHILLLFKELLISATT 175 (198)
T ss_pred HhcC---CcEEEecCCCCCCHHHHHHHHHHHhhc
Confidence 223 368999999999999999999986643
No 170
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=3.7e-19 Score=160.49 Aligned_cols=158 Identities=22% Similarity=0.250 Sum_probs=130.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
+...+|+++|..|+|||+|+.++... . ..+-.|.||..++.-......++.+++++|||+|++
T Consensus 5 kflfkivlvgnagvgktclvrrftqg--l---------------fppgqgatigvdfmiktvev~gekiklqiwdtagqe 67 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQG--L---------------FPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQE 67 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhcc--C---------------CCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchH
Confidence 34689999999999999999999652 1 233567788888888888888999999999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc----CCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCT 236 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~----~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~ 236 (646)
+|+..+..|++.+++.|||+|.+...++..+..|...++. .+--|+|+||+|+.+.+ +++..+++.+... .
T Consensus 68 rfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qd---m 144 (213)
T KOG0095|consen 68 RFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQD---M 144 (213)
T ss_pred HHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhh---h
Confidence 9999999999999999999999999999999999887763 44478999999986542 3444455544422 2
Q ss_pred cccccccccccchhHHHHHHHHhC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
-++++||+...||+.||..+..++
T Consensus 145 yfletsakea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 145 YFLETSAKEADNVEKLFLDLACRL 168 (213)
T ss_pred hhhhhcccchhhHHHHHHHHHHHH
Confidence 478999999999999999887654
No 171
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.80 E-value=6.6e-19 Score=164.98 Aligned_cols=151 Identities=22% Similarity=0.243 Sum_probs=112.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
||+++|++|+|||||+++|+...... ....|.........+..++....+++|||||+..+..
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~-----------------~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 64 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDE-----------------NYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRS 64 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCC-----------------ccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHH
Confidence 79999999999999999998632111 1111333333333344444568899999999999999
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc----CCCeEEEEeccCCC--CCCchHHHHHHHHHhCCCcccccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLP--GAEPSRVAREIEEVIGLDCTNAIL 240 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~----~~piIvViNKiDl~--~~~~~~~~~el~~~l~~~~~~i~~ 240 (646)
.+..+++.+|++++|+|+++..+.+....|...... +.|+++|+||+|+. .....+...++.+.. ..++++
T Consensus 65 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~ 141 (159)
T cd00154 65 ITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKEN---GLLFFE 141 (159)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHc---CCeEEE
Confidence 999999999999999999998777777777765543 48999999999995 332333334444433 346999
Q ss_pred cccccccchhHHHHHHH
Q 043429 241 CSAKEGIGINEILNAIV 257 (646)
Q Consensus 241 vSAk~g~GV~eLl~~I~ 257 (646)
+||++|.|+++++++|.
T Consensus 142 ~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 142 TSAKTGENVEELFQSLA 158 (159)
T ss_pred EecCCCCCHHHHHHHHh
Confidence 99999999999999986
No 172
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.80 E-value=4.9e-19 Score=180.93 Aligned_cols=159 Identities=18% Similarity=0.221 Sum_probs=116.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
+|+++|..|+|||||+++++.... .+. .-.|+. ......+..++..+.++||||+|+.+|..
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f-----------~~~------y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~ 63 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRF-----------EEQ------YTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPA 63 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC-----------CCC------CCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhH
Confidence 799999999999999999986211 111 111222 12223344455678999999999999988
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-------------cCCCeEEEEeccCCCCCCchHHHHHHHHHhCC
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-------------NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL 233 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-------------~~~piIvViNKiDl~~~~~~~~~~el~~~l~~ 233 (646)
....++..+|++|+|+|+++..+++.+..|...+. .++|+++|+||+|+..... ...+++.+.++.
T Consensus 64 ~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~-v~~~ei~~~~~~ 142 (247)
T cd04143 64 MRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE-VQRDEVEQLVGG 142 (247)
T ss_pred HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc-cCHHHHHHHHHh
Confidence 88788899999999999999988888877755442 3689999999999964221 122344444432
Q ss_pred -CcccccccccccccchhHHHHHHHHhCCCCC
Q 043429 234 -DCTNAILCSAKEGIGINEILNAIVKRIPPPS 264 (646)
Q Consensus 234 -~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P~ 264 (646)
...+++++||++|.|++++|++|.....-|.
T Consensus 143 ~~~~~~~evSAktg~gI~elf~~L~~~~~~p~ 174 (247)
T cd04143 143 DENCAYFEVSAKKNSNLDEMFRALFSLAKLPN 174 (247)
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHhcccc
Confidence 2346899999999999999999998765443
No 173
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.80 E-value=5.5e-19 Score=167.28 Aligned_cols=150 Identities=22% Similarity=0.223 Sum_probs=108.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
||+++|++|+|||||++++++... . +...|+......+.+. ...+++|||||+..+..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~----------------~~~~t~~~~~~~~~~~----~~~~~i~D~~G~~~~~~ 58 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--V----------------TTIPTIGFNVETVEYK----NVSFTVWDVGGQDKIRP 58 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--C----------------CCCCCcCcceEEEEEC----CEEEEEEECCCChhhHH
Confidence 589999999999999999987321 0 0111333333334443 68899999999999988
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHH-H----cCCCeEEEEeccCCCCCCc-hHHHHHHHHH-hCCCccccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NNLEIIPVLNKIDLPGAEP-SRVAREIEEV-IGLDCTNAI 239 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~-~----~~~piIvViNKiDl~~~~~-~~~~~el~~~-l~~~~~~i~ 239 (646)
.+..++..+|++++|+|++++.+......|.... . .+.|+++|+||+|+..... +++.+.+... ......+++
T Consensus 59 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (158)
T cd00878 59 LWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQ 138 (158)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEE
Confidence 8999999999999999999886665554443322 2 4789999999999876542 2332222221 112234799
Q ss_pred ccccccccchhHHHHHHHH
Q 043429 240 LCSAKEGIGINEILNAIVK 258 (646)
Q Consensus 240 ~vSAk~g~GV~eLl~~I~~ 258 (646)
++||++|.|+++++++|..
T Consensus 139 ~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 139 PCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred EeeCCCCCCHHHHHHHHhh
Confidence 9999999999999999875
No 174
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.80 E-value=8.1e-19 Score=169.69 Aligned_cols=149 Identities=21% Similarity=0.244 Sum_probs=108.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
.++|+++|++|+|||||+++|+..... . ...|+........+. ...+.+|||||+..|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~-----------~-------~~~t~~~~~~~~~~~----~~~~~l~D~~G~~~~ 72 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVV-----------H-------TSPTIGSNVEEIVYK----NIRFLMWDIGGQESL 72 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCC-----------C-------cCCccccceEEEEEC----CeEEEEEECCCCHHH
Confidence 468999999999999999999752110 0 112333333333333 688999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHH-HHH----cCCCeEEEEeccCCCCCCchHHHHHHHHHhCCC-----
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYL-ALE----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLD----- 234 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~-~~~----~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~----- 234 (646)
...+..+++.+|++++|+|++++.++.....+.. ... .++|+++|+||+|+.+.... +++.+.++..
T Consensus 73 ~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~---~~i~~~l~~~~~~~~ 149 (174)
T cd04153 73 RSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTP---AEISESLGLTSIRDH 149 (174)
T ss_pred HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCH---HHHHHHhCcccccCC
Confidence 9999999999999999999998866655444333 322 35899999999999764322 2333334321
Q ss_pred cccccccccccccchhHHHHHHHH
Q 043429 235 CTNAILCSAKEGIGINEILNAIVK 258 (646)
Q Consensus 235 ~~~i~~vSAk~g~GV~eLl~~I~~ 258 (646)
..+++++||++|.||++++++|.+
T Consensus 150 ~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 150 TWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred ceEEEecccCCCCCHHHHHHHHhc
Confidence 225899999999999999999865
No 175
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=3.5e-19 Score=179.75 Aligned_cols=182 Identities=30% Similarity=0.373 Sum_probs=145.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecC----------------
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFEN---------------- 148 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~---------------- 148 (646)
-.||+.+||++||||||..+|.. . -+|....|-+|||||+...+...+....
T Consensus 10 ~vNIG~vGHVdHGKtTlv~AlsG---v---------wT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~ 77 (415)
T COG5257 10 EVNIGMVGHVDHGKTTLTKALSG---V---------WTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPN 77 (415)
T ss_pred ceEeeeeeecccchhhheehhhc---e---------eeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCC
Confidence 36999999999999999999955 1 1356677889999999876554332100
Q ss_pred ------CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCC-ccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCC-
Q 043429 149 ------EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG-VEAQTLANVYLALENNLE-IIPVLNKIDLPGAE- 219 (646)
Q Consensus 149 ------~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g-~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~- 219 (646)
-...+.|+|.|||+-....+.+..+-.|+++||++|++. .++||.+++....-.++. +++|-||+|+....
T Consensus 78 cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~ 157 (415)
T COG5257 78 CGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRER 157 (415)
T ss_pred CCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHH
Confidence 123578999999999888888888889999999999987 688999988776666766 89999999997543
Q ss_pred chHHHHHHHHHhC---CCcccccccccccccchhHHHHHHHHhCCCCCCCCCCCceEEEEEE
Q 043429 220 PSRVAREIEEVIG---LDCTNAILCSAKEGIGINEILNAIVKRIPPPSNTAGCPFRALIFDR 278 (646)
Q Consensus 220 ~~~~~~el~~~l~---~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P~~~~~~pl~~~vf~~ 278 (646)
..+-.+++.++.. ....|++++||..+.||+.|+++|.+++|.|..+.+.|.++.|..|
T Consensus 158 AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~~p~m~v~RS 219 (415)
T COG5257 158 ALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDKPPRMYVARS 219 (415)
T ss_pred HHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCCCCceEEEEee
Confidence 2333456666553 2345899999999999999999999999999999999999999765
No 176
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.80 E-value=8.9e-19 Score=175.05 Aligned_cols=156 Identities=19% Similarity=0.183 Sum_probs=118.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEe-cCCCeEEEEEeCCCCccc
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVF-ENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~-~~~~~~l~liDTPG~~df 164 (646)
.||+++|.+|+|||||+++|++.... .....|+........+.. ++..+.+++|||||+..|
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~-----------------~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~ 65 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFA-----------------EVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF 65 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-----------------CCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhH
Confidence 68999999999999999999862111 011124443333333333 345688999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc-----CCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCccc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTN 237 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~-----~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~ 237 (646)
......+++.+|++++|+|+++..++..+..|...... ..|+++|+||+|+.... ..+...++.+.++ .+
T Consensus 66 ~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~---~~ 142 (211)
T cd04111 66 RSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLG---MK 142 (211)
T ss_pred HHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhC---CE
Confidence 98888999999999999999999888888888765542 46689999999986532 2334456666666 35
Q ss_pred ccccccccccchhHHHHHHHHhCC
Q 043429 238 AILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
++++||++|.||+++|++|.+.+.
T Consensus 143 ~~e~Sak~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 143 YIETSARTGDNVEEAFELLTQEIY 166 (211)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999998764
No 177
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.80 E-value=1.2e-18 Score=192.95 Aligned_cols=191 Identities=23% Similarity=0.262 Sum_probs=141.7
Q ss_pred ccceeEeecCCCCCchHHhhhhhcccccc---CCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCcccccccccccccccc
Q 043429 51 HSCIFRVSCQSQATDAELATRVGQDRLLK---VPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDL 127 (646)
Q Consensus 51 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~---~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~ 127 (646)
...++.+|+.++.+.......+....... .+.....+|+|+|++|+|||||+++|++... ...
T Consensus 136 ~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~--------------~~~ 201 (435)
T PRK00093 136 LGEPYPISAEHGRGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEER--------------VIV 201 (435)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCCc--------------eee
Confidence 34468899999999888887765422111 0123468999999999999999999987322 123
Q ss_pred ccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh-----------hHhhhhhhccceEEEEeCCCCccHhhHHHH
Q 043429 128 ERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY-----------EVSRSLAACEGALLVVDASQGVEAQTLANV 196 (646)
Q Consensus 128 e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~-----------~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~ 196 (646)
...+|+|.+.....+.+. +..+++|||||+.+... ...++++.+|++|+|+|++++.+.++...+
T Consensus 202 ~~~~gtt~~~~~~~~~~~----~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~ 277 (435)
T PRK00093 202 SDIAGTTRDSIDTPFERD----GQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIA 277 (435)
T ss_pred cCCCCceEEEEEEEEEEC----CeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH
Confidence 446678877665555443 67789999999754321 233578899999999999999999999988
Q ss_pred HHHHHcCCCeEEEEeccCCCCCC-chHHHHHHHHHhC-CCcccccccccccccchhHHHHHHHHh
Q 043429 197 YLALENNLEIIPVLNKIDLPGAE-PSRVAREIEEVIG-LDCTNAILCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 197 ~~~~~~~~piIvViNKiDl~~~~-~~~~~~el~~~l~-~~~~~i~~vSAk~g~GV~eLl~~I~~~ 259 (646)
..+.+.++|+++|+||+|+.... ..+..+++.+.+. ....+++++||++|.|++++++.+.+.
T Consensus 278 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~ 342 (435)
T PRK00093 278 GLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEA 342 (435)
T ss_pred HHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 88888999999999999987332 2334444554443 334589999999999999999998764
No 178
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.80 E-value=1e-18 Score=171.54 Aligned_cols=155 Identities=16% Similarity=0.185 Sum_probs=113.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
||+++|++|+|||||+++|+...... .....|+........+..++..+.+++|||||+.++..
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~ 65 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLV----------------GPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEA 65 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCC----------------cCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhh
Confidence 79999999999999999998622110 00111333333333344555678899999999999888
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc---CCCeEEEEeccCCCCCCc------hHHHHHHHHHhCCCccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN---NLEIIPVLNKIDLPGAEP------SRVAREIEEVIGLDCTN 237 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~---~~piIvViNKiDl~~~~~------~~~~~el~~~l~~~~~~ 237 (646)
....+++.+|++++|+|+++..+++....|...+.. +.|+++|+||+|+..... .....++...++ .+
T Consensus 66 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~---~~ 142 (193)
T cd04118 66 MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK---AQ 142 (193)
T ss_pred hhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcC---Ce
Confidence 888889999999999999998888777777765543 689999999999854321 112233333333 35
Q ss_pred ccccccccccchhHHHHHHHHhC
Q 043429 238 AILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
++++||++|.|+++++++|.+.+
T Consensus 143 ~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 143 HFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999765
No 179
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.80 E-value=9.6e-19 Score=165.91 Aligned_cols=153 Identities=22% Similarity=0.227 Sum_probs=112.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
||+++|.+|+|||||+++++.....- ....|+... .......++..+.+.+|||||+.++..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~-----------------~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~ 63 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVE-----------------DYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAA 63 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcc-----------------ccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhH
Confidence 79999999999999999998632110 000111111 111223344568899999999999999
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCC--CchHHHHHHHHHhCCCccccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGA--EPSRVAREIEEVIGLDCTNAI 239 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~--~~~~~~~el~~~l~~~~~~i~ 239 (646)
....+++.+|++++|+|.++..++.....|..... .++|+++|+||+|+... .......++.+.++. +++
T Consensus 64 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~---~~~ 140 (164)
T cd04139 64 IRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGV---PYV 140 (164)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCC---eEE
Confidence 99999999999999999998777666655544332 47999999999998652 233334455555554 589
Q ss_pred ccccccccchhHHHHHHHHhC
Q 043429 240 LCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 240 ~vSAk~g~GV~eLl~~I~~~i 260 (646)
++||++|.|++++++++.+++
T Consensus 141 ~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 141 ETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred EeeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998765
No 180
>PLN03118 Rab family protein; Provisional
Probab=99.80 E-value=1.2e-18 Score=173.90 Aligned_cols=157 Identities=18% Similarity=0.204 Sum_probs=115.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
-.+|+|+|++|+|||||+++|+.... . +...|.........+..++..+.++||||||+.+|
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~--~----------------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~ 75 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSV--E----------------DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF 75 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC--C----------------CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhh
Confidence 36999999999999999999986211 0 01112222222233334455688999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHH-HHHHHH-----cCCCeEEEEeccCCCCCCc--hHHHHHHHHHhCCCcc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLALE-----NNLEIIPVLNKIDLPGAEP--SRVAREIEEVIGLDCT 236 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~-~~~~~~-----~~~piIvViNKiDl~~~~~--~~~~~el~~~l~~~~~ 236 (646)
...+..+++.+|++|+|+|+++..+++.+.. |..... .+.|+++|+||+|+..... .+...++....+ .
T Consensus 76 ~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~---~ 152 (211)
T PLN03118 76 RTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHG---C 152 (211)
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcC---C
Confidence 9999999999999999999999988888764 544332 3678999999999875432 222233333333 3
Q ss_pred cccccccccccchhHHHHHHHHhCCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+++++||++|.|++++|++|.+.+..
T Consensus 153 ~~~e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 153 LFLECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999987743
No 181
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.80 E-value=6.7e-19 Score=172.26 Aligned_cols=151 Identities=21% Similarity=0.252 Sum_probs=109.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|++|+|||||+++|..... . ....|+......+.+. +..+++|||||+.++
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~--~----------------~~~~T~~~~~~~i~~~----~~~~~l~D~~G~~~~ 76 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRL--A----------------QHVPTLHPTSEELTIG----NIKFKTFDLGGHEQA 76 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC--c----------------ccCCccCcceEEEEEC----CEEEEEEECCCCHHH
Confidence 46899999999999999999975211 0 0111333333333333 678999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCCchHHHHHHHHHhCC------
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL------ 233 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~~~~~~~el~~~l~~------ 233 (646)
...+..+++.+|++++|+|+++..+++....|..... .+.|+++|+||+|+...... +++++.++.
T Consensus 77 ~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~ 153 (190)
T cd00879 77 RRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSE---EELRQALGLYGTTTG 153 (190)
T ss_pred HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCH---HHHHHHhCccccccc
Confidence 8888899999999999999998766555444443332 46999999999999764333 233333332
Q ss_pred ----------CcccccccccccccchhHHHHHHHHhC
Q 043429 234 ----------DCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 234 ----------~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
...++++|||++|+|++++|++|.+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 154 KGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred ccccccccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 123589999999999999999998753
No 182
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.80 E-value=9.6e-19 Score=167.39 Aligned_cols=153 Identities=22% Similarity=0.220 Sum_probs=104.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc---
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD--- 163 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d--- 163 (646)
+|+++|++|||||||+++|...... +....+.|.......+.+. ....+++|||||+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~---------------v~~~~~~t~~~~~~~~~~~---~~~~~~l~DtpG~~~~~~ 63 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK---------------IADYPFTTLVPNLGVVRVD---DGRSFVVADIPGLIEGAS 63 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc---------------ccCCCccccCCcceEEEcC---CCCeEEEEecCcccCccc
Confidence 7899999999999999999752211 1122333444433333332 124899999999753
Q ss_pred ----chhhHhhhhhhccceEEEEeCCCC-ccHhhHHHHHHHHH------cCCCeEEEEeccCCCCCCchHHHHHHHHHhC
Q 043429 164 ----FSYEVSRSLAACEGALLVVDASQG-VEAQTLANVYLALE------NNLEIIPVLNKIDLPGAEPSRVAREIEEVIG 232 (646)
Q Consensus 164 ----f~~~~~~~l~~ad~~IlVvDa~~g-~~~qt~~~~~~~~~------~~~piIvViNKiDl~~~~~~~~~~el~~~l~ 232 (646)
+...+.+.+..||++++|+|++++ ...+....|...+. .+.|+++|+||+|+...... .+.+.+...
T Consensus 64 ~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~--~~~~~~~~~ 141 (170)
T cd01898 64 EGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL--FELLKELLK 141 (170)
T ss_pred ccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh--HHHHHHHHh
Confidence 222333455669999999999998 67777777765543 36899999999998654321 122222222
Q ss_pred C-CcccccccccccccchhHHHHHHHHh
Q 043429 233 L-DCTNAILCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 233 ~-~~~~i~~vSAk~g~GV~eLl~~I~~~ 259 (646)
. ...+++++||++|.|+++++++|.+.
T Consensus 142 ~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 142 ELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred hCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 2 23468999999999999999999865
No 183
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.80 E-value=1e-18 Score=170.58 Aligned_cols=151 Identities=21% Similarity=0.239 Sum_probs=109.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|++|+|||||++++... .. .. .. .|+......+.+ .++.+++|||||+..+
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~--~~---------~~---~~----~T~~~~~~~~~~----~~~~~~l~D~~G~~~~ 74 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLG--EV---------VT---TI----PTIGFNVETVEY----KNLKFTMWDVGGQDKL 74 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcC--Cc---------cc---cC----CccccceEEEEE----CCEEEEEEECCCCHhH
Confidence 368999999999999999999641 11 01 01 133332222332 3789999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHH-H----cCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCc----
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDC---- 235 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~-~----~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~---- 235 (646)
...+..+++.+|++|+|+|+++..++.....+.... . .+.|+++|+||+|+++.... +++.+.++...
T Consensus 75 ~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~l~~~~~~~~ 151 (182)
T PTZ00133 75 RPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMST---TEVTEKLGLHSVRQR 151 (182)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCH---HHHHHHhCCCcccCC
Confidence 999999999999999999999876665554433322 2 35899999999999765432 24444555432
Q ss_pred -ccccccccccccchhHHHHHHHHhC
Q 043429 236 -TNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 236 -~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
..++++||++|.|+++++++|.+.+
T Consensus 152 ~~~~~~~Sa~tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 152 NWYIQGCCATTAQGLYEGLDWLSANI 177 (182)
T ss_pred cEEEEeeeCCCCCCHHHHHHHHHHHH
Confidence 1466899999999999999998765
No 184
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.80 E-value=1.1e-18 Score=167.09 Aligned_cols=155 Identities=17% Similarity=0.162 Sum_probs=110.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
||+++|+.|+|||||+++|...... ...+ . +.. ..+......+..+.+++|||||+.++..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~-----------~~~~-----~-~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 62 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP-----------ENVP-----R-VLP--EITIPADVTPERVPTTIVDTSSRPQDRA 62 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC-----------ccCC-----C-ccc--ceEeeeeecCCeEEEEEEeCCCchhhhH
Confidence 7999999999999999999873211 1000 0 110 0112222344578999999999998888
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHH-HHHHHHH---cCCCeEEEEeccCCCCCCch----HHHHHHHHHhCCCcccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLA-NVYLALE---NNLEIIPVLNKIDLPGAEPS----RVAREIEEVIGLDCTNA 238 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~-~~~~~~~---~~~piIvViNKiDl~~~~~~----~~~~el~~~l~~~~~~i 238 (646)
.+..++..+|++++|+|++++.+++.+. .|...++ .+.|+++|+||+|+.+.... +....+.+.+.. ..++
T Consensus 63 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~ 141 (166)
T cd01893 63 NLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFRE-IETC 141 (166)
T ss_pred HHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhc-ccEE
Confidence 8888899999999999999998888864 4654443 37899999999999765431 222223333321 1368
Q ss_pred cccccccccchhHHHHHHHHhCC
Q 043429 239 ILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+++||++|.|++++|+.+.+.+.
T Consensus 142 ~e~Sa~~~~~v~~lf~~~~~~~~ 164 (166)
T cd01893 142 VECSAKTLINVSEVFYYAQKAVL 164 (166)
T ss_pred EEeccccccCHHHHHHHHHHHhc
Confidence 99999999999999999987654
No 185
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.79 E-value=9.1e-19 Score=204.18 Aligned_cols=226 Identities=19% Similarity=0.164 Sum_probs=158.8
Q ss_pred ccCCCCCCEEEeeecccccccCCCcCccchhhcccccccccccccccccceeEeecCCCCCchHHhhhhhcccccc----
Q 043429 4 ELSSSPAPVLSIKHQTFATLKKPHISSLSHFLSKSHRRCNYSLSISKHSCIFRVSCQSQATDAELATRVGQDRLLK---- 79 (646)
Q Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~~s~~~~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~---- 79 (646)
.+...+.|++.+.++.+..-. .... ..++..+...++.+|+.++.+...+...+.......
T Consensus 378 ~Lr~~~~pvIlV~NK~D~~~~---~~~~------------~~~~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~~~~~~ 442 (712)
T PRK09518 378 MLRRAGKPVVLAVNKIDDQAS---EYDA------------AEFWKLGLGEPYPISAMHGRGVGDLLDEALDSLKVAEKTS 442 (712)
T ss_pred HHHhcCCCEEEEEECcccccc---hhhH------------HHHHHcCCCCeEEEECCCCCCchHHHHHHHHhcccccccc
Confidence 345678899999998885311 0001 111223344568899999999998887665432211
Q ss_pred --CCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEe
Q 043429 80 --VPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLID 157 (646)
Q Consensus 80 --~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liD 157 (646)
.+.+..++|+|+|++|+|||||+++|+..... .+....|+|.+.....+.+. +..+.+||
T Consensus 443 ~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~--------------~v~~~~gtT~d~~~~~~~~~----~~~~~liD 504 (712)
T PRK09518 443 GFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERA--------------VVNDLAGTTRDPVDEIVEID----GEDWLFID 504 (712)
T ss_pred cccCCCCCcEEEEECCCCCCHHHHHHHHhCcccc--------------ccCCCCCCCcCcceeEEEEC----CCEEEEEE
Confidence 11345689999999999999999999873211 12335677777655555554 56788999
Q ss_pred CCCCcc----------chhh-HhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCc-hHHHH
Q 043429 158 TPGHVD----------FSYE-VSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEP-SRVAR 225 (646)
Q Consensus 158 TPG~~d----------f~~~-~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~-~~~~~ 225 (646)
|||+.+ |... ...+++.||++++|+|++++.+.++...+......++|+++|+||+|+.+... +...+
T Consensus 505 TaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~ 584 (712)
T PRK09518 505 TAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLER 584 (712)
T ss_pred CCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHH
Confidence 999742 1111 23457889999999999999999999888888888999999999999975432 22233
Q ss_pred HHHHHh-CCCcccccccccccccchhHHHHHHHHhCCC
Q 043429 226 EIEEVI-GLDCTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 226 el~~~l-~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
++...+ ..+..+++++||++|.|++++++.+.+..+.
T Consensus 585 ~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 585 LWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred HHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 444433 3445678999999999999999999887654
No 186
>PRK15494 era GTPase Era; Provisional
Probab=99.79 E-value=1.2e-18 Score=186.03 Aligned_cols=160 Identities=21% Similarity=0.179 Sum_probs=109.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
.+..+|+++|++|+|||||+++|++....+ +....++|.......+.+. +..++||||||+.
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~i--------------vs~k~~tTr~~~~~~~~~~----~~qi~~~DTpG~~ 111 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSI--------------VTPKVQTTRSIITGIITLK----DTQVILYDTPGIF 111 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceee--------------ccCCCCCccCcEEEEEEeC----CeEEEEEECCCcC
Confidence 345699999999999999999998632211 2233445544333333333 6789999999985
Q ss_pred cchh--------hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCC
Q 043429 163 DFSY--------EVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLD 234 (646)
Q Consensus 163 df~~--------~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~ 234 (646)
+... ....++..||++++|+|++++....+...+......+.|.++|+||+|+.+....+..+.+.+. ..
T Consensus 112 ~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~~--~~ 189 (339)
T PRK15494 112 EPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTEN--HP 189 (339)
T ss_pred CCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHhc--CC
Confidence 4221 1224578999999999998876555443333444567888999999999754322222222221 12
Q ss_pred cccccccccccccchhHHHHHHHHhCCC
Q 043429 235 CTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 235 ~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
..+++++||++|.|+++++++|.+.+|+
T Consensus 190 ~~~i~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 190 DSLLFPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred CcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence 3468999999999999999999998875
No 187
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.79 E-value=8.4e-19 Score=168.48 Aligned_cols=150 Identities=22% Similarity=0.264 Sum_probs=109.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
+|+++|.+|+|||||+++|... .. .....|+......+.+. ++.+++|||||+..|..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~---~~---------------~~~~~t~g~~~~~~~~~----~~~~~i~D~~G~~~~~~ 58 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE---IP---------------KKVAPTVGFTPTKLRLD----KYEVCIFDLGGGANFRG 58 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC---CC---------------ccccCcccceEEEEEEC----CEEEEEEECCCcHHHHH
Confidence 4799999999999999999652 10 01122444333334333 78999999999999999
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCCc-hHHHHHH--HHHhC-C-Ccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAEP-SRVAREI--EEVIG-L-DCT 236 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~~-~~~~~el--~~~l~-~-~~~ 236 (646)
.+..+++.||++++|+|+++..+++....|...+. .++|+++|+||+|++++.. .+..+.+ .+... . ...
T Consensus 59 ~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~ 138 (167)
T cd04161 59 IWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLC 138 (167)
T ss_pred HHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceE
Confidence 99999999999999999999877776666655443 3789999999999987663 2333222 11110 1 123
Q ss_pred cccccccccc------cchhHHHHHHHH
Q 043429 237 NAILCSAKEG------IGINEILNAIVK 258 (646)
Q Consensus 237 ~i~~vSAk~g------~GV~eLl~~I~~ 258 (646)
.++++||++| .|+++.|+||.+
T Consensus 139 ~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 139 HIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 5788999998 899999999964
No 188
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.79 E-value=3.1e-19 Score=149.58 Aligned_cols=77 Identities=27% Similarity=0.487 Sum_probs=74.0
Q ss_pred ccEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeec
Q 043429 447 EPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKES 525 (646)
Q Consensus 447 EP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~ 525 (646)
|||++++|.+|++|+|+|+++|++|||++.+++..+ +++.|++.+|++|+ +||.++||++|+|+|+|+++|+||++.
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~~~~P~~e~-~g~~~~Lr~~T~G~~~~~~~f~~y~~~ 77 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGE-DEFTLEAEVPLNDM-FGYSTELRSMTQGKGEFSMEFSRYAPV 77 (78)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHHCCCEEeceEecC-CeEEEEEEECHHHh-hChHHHHHhhCCCcEEEEEEecceEEC
Confidence 899999999999999999999999999999998755 78999999999999 899999999999999999999999985
No 189
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.79 E-value=1e-18 Score=170.71 Aligned_cols=150 Identities=19% Similarity=0.184 Sum_probs=109.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
-.+|+++|.+|+|||||+++|...... . ... |.......+.+. ++.+++|||||+..+
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~-----------~---~~~----t~~~~~~~~~~~----~~~~~~~D~~G~~~~ 74 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLA-----------Q---HQP----TQHPTSEELAIG----NIKFTTFDLGGHQQA 74 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCc-----------c---cCC----ccccceEEEEEC----CEEEEEEECCCCHHH
Confidence 368999999999999999999762110 0 011 222222223332 688999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHH-H----cCCCeEEEEeccCCCCCCchHHHHHHHHHhCC------
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL------ 233 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~-~----~~~piIvViNKiDl~~~~~~~~~~el~~~l~~------ 233 (646)
...+..++..+|++++|+|+++..+......+...+ + .+.|+++|+||+|++..... +++.+.+++
T Consensus 75 ~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~---~~i~~~l~l~~~~~~ 151 (184)
T smart00178 75 RRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASE---DELRYALGLTNTTGS 151 (184)
T ss_pred HHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCH---HHHHHHcCCCccccc
Confidence 888999999999999999999876665554443332 2 47899999999999765332 234444432
Q ss_pred ------CcccccccccccccchhHHHHHHHHh
Q 043429 234 ------DCTNAILCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 234 ------~~~~i~~vSAk~g~GV~eLl~~I~~~ 259 (646)
....+++|||++|.|++++++||.+.
T Consensus 152 ~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 152 KGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 23458999999999999999999865
No 190
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.79 E-value=9.5e-19 Score=167.66 Aligned_cols=150 Identities=17% Similarity=0.218 Sum_probs=105.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchhh
Q 043429 88 FSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYE 167 (646)
Q Consensus 88 I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~~ 167 (646)
|+++|+.|+|||||+++|...... .. ...|+......+. ..++.+.+|||||+.+|...
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~-----------~~------~~pt~g~~~~~i~----~~~~~l~i~Dt~G~~~~~~~ 60 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL-----------ES------VVPTTGFNSVAIP----TQDAIMELLEIGGSQNLRKY 60 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc-----------cc------ccccCCcceEEEe----eCCeEEEEEECCCCcchhHH
Confidence 789999999999999999863211 00 1113332222222 34789999999999999999
Q ss_pred HhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH---cCCCeEEEEeccCCCCCCchHH-HHH--HHHHhCCCccccccc
Q 043429 168 VSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NNLEIIPVLNKIDLPGAEPSRV-ARE--IEEVIGLDCTNAILC 241 (646)
Q Consensus 168 ~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~---~~~piIvViNKiDl~~~~~~~~-~~e--l~~~l~~~~~~i~~v 241 (646)
+..+++.+|++|+|+|+++..++.....|..... .++|+++|+||+|+........ .+. +.....-....++++
T Consensus 61 ~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 140 (164)
T cd04162 61 WKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGT 140 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEe
Confidence 9999999999999999999877766666554442 5799999999999976653221 111 111111112346667
Q ss_pred cccc------ccchhHHHHHHHH
Q 043429 242 SAKE------GIGINEILNAIVK 258 (646)
Q Consensus 242 SAk~------g~GV~eLl~~I~~ 258 (646)
||++ ++||+++|+.++.
T Consensus 141 Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 141 SLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred eecCCCChhHHHHHHHHHHHHhc
Confidence 6666 9999999998864
No 191
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.79 E-value=1.4e-18 Score=167.24 Aligned_cols=154 Identities=18% Similarity=0.218 Sum_probs=110.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchhh
Q 043429 88 FSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYE 167 (646)
Q Consensus 88 I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~~ 167 (646)
|+|+|++|+|||||+++++.... . ..+. .|+... .......++..+.+.+|||||+.++...
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~--~---------~~~~------~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 62 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF--P---------EDYV------PTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRL 62 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC--C---------CCCC------CcEEee-eeEEEEECCEEEEEEEEECCCCcccchh
Confidence 58999999999999999987321 1 1010 122111 1112233455678999999999999888
Q ss_pred HhhhhhhccceEEEEeCCCCccHhhHH-HHHHHHH---cCCCeEEEEeccCCCCCC--------------chHHHHHHHH
Q 043429 168 VSRSLAACEGALLVVDASQGVEAQTLA-NVYLALE---NNLEIIPVLNKIDLPGAE--------------PSRVAREIEE 229 (646)
Q Consensus 168 ~~~~l~~ad~~IlVvDa~~g~~~qt~~-~~~~~~~---~~~piIvViNKiDl~~~~--------------~~~~~~el~~ 229 (646)
...+++.+|++|+|+|+++..+++.+. .|...+. .++|+++|+||+|+.... ..+..+++.+
T Consensus 63 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 142 (174)
T smart00174 63 RPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAK 142 (174)
T ss_pred chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHH
Confidence 888999999999999999988888774 4665554 379999999999986421 1122234444
Q ss_pred HhCCCcccccccccccccchhHHHHHHHHhCC
Q 043429 230 VIGLDCTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 230 ~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
.++. .+++++||++|.||+++|+.+++.+-
T Consensus 143 ~~~~--~~~~e~Sa~~~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 143 RIGA--VKYLECSALTQEGVREVFEEAIRAAL 172 (174)
T ss_pred HcCC--cEEEEecCCCCCCHHHHHHHHHHHhc
Confidence 4443 25899999999999999999987653
No 192
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.79 E-value=1.3e-18 Score=164.83 Aligned_cols=148 Identities=22% Similarity=0.272 Sum_probs=104.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
+|+++|.+|+|||||+++|...... .. ..|+......+.+ +..+.+++|||||+..+..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-----------~~-------~~t~~~~~~~~~~---~~~~~l~i~D~~G~~~~~~ 59 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-----------TT-------IPTVGFNVEMLQL---EKHLSLTVWDVGGQEKMRT 59 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-----------cc-------cCccCcceEEEEe---CCceEEEEEECCCCHhHHH
Confidence 4899999999999999999763210 00 1122222222222 2358899999999999988
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHH-H----cCCCeEEEEeccCCCCCCchHHHHHHHHHhCC------Cc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL------DC 235 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~-~----~~~piIvViNKiDl~~~~~~~~~~el~~~l~~------~~ 235 (646)
.+..++..+|++++|+|+++..+......|.... . .+.|+++|+||+|++..... +++...++. ..
T Consensus 60 ~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~i~~~~~~~~~~~~~~ 136 (160)
T cd04156 60 VWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTA---EEITRRFKLKKYCSDRD 136 (160)
T ss_pred HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCH---HHHHHHcCCcccCCCCc
Confidence 8888999999999999999877665555444332 1 47999999999999754322 223322221 12
Q ss_pred ccccccccccccchhHHHHHHHH
Q 043429 236 TNAILCSAKEGIGINEILNAIVK 258 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~ 258 (646)
.+++++||++|.|+++++++|.+
T Consensus 137 ~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 137 WYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred EEEEecccccCCChHHHHHHHhc
Confidence 35899999999999999999864
No 193
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.79 E-value=1.8e-18 Score=166.50 Aligned_cols=154 Identities=17% Similarity=0.195 Sum_probs=110.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
||+++|++|+|||||+++++..... +.. -.|+. ......+..++..+.+++|||||+.+|..
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~-----------~~~------~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 63 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP-----------EEY------VPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDR 63 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-----------CCC------CCcee-eeeEEEEEECCEEEEEEEEeCCCcccccc
Confidence 7999999999999999999873210 000 01221 11112233444567899999999999988
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHH-HHHHHHH---cCCCeEEEEeccCCCCCCc--------------hHHHHHHH
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLA-NVYLALE---NNLEIIPVLNKIDLPGAEP--------------SRVAREIE 228 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~-~~~~~~~---~~~piIvViNKiDl~~~~~--------------~~~~~el~ 228 (646)
....+++.+|++++|+|.++..+++... .|...+. .++|+++|+||+|+.+... .+..+++.
T Consensus 64 ~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 143 (174)
T cd04135 64 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLA 143 (174)
T ss_pred cccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHH
Confidence 8888999999999999999998887774 4544433 4799999999999864321 11122333
Q ss_pred HHhCCCcccccccccccccchhHHHHHHHHhC
Q 043429 229 EVIGLDCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 229 ~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+.++. .+++++||++|.|++++|+.+++.+
T Consensus 144 ~~~~~--~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 144 KEIGA--HCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred HHcCC--CEEEEecCCcCCCHHHHHHHHHHHh
Confidence 33443 3589999999999999999998754
No 194
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.78 E-value=2.2e-18 Score=178.76 Aligned_cols=155 Identities=19% Similarity=0.143 Sum_probs=105.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch-
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS- 165 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~- 165 (646)
+|+++|++|+|||||+|+|++....+ +....++|....... + ...+..+.||||||+.+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~--------------vs~~~~TTr~~i~~i--~--~~~~~qii~vDTPG~~~~~~ 63 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISI--------------TSPKAQTTRNRISGI--H--TTGASQIIFIDTPGFHEKKH 63 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEee--------------cCCCCCcccCcEEEE--E--EcCCcEEEEEECcCCCCCcc
Confidence 58999999999999999998742211 222334444322111 1 1225679999999986531
Q ss_pred -------hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCC-Cccc
Q 043429 166 -------YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL-DCTN 237 (646)
Q Consensus 166 -------~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~-~~~~ 237 (646)
..+..++..+|++++|+|++++.+.+ ...+......+.|+++|+||+|+.. .....+.+.+.... ...+
T Consensus 64 ~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~ 140 (270)
T TIGR00436 64 SLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKF--KDKLLPLIDKYAILEDFKD 140 (270)
T ss_pred hHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCC--HHHHHHHHHHHHhhcCCCc
Confidence 12446788999999999999876654 2223333456899999999999863 22222333222221 2236
Q ss_pred ccccccccccchhHHHHHHHHhCCC
Q 043429 238 AILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
++++||++|.|+++|+++|.+.+|+
T Consensus 141 v~~iSA~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 141 IVPISALTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred eEEEecCCCCCHHHHHHHHHHhCCC
Confidence 8999999999999999999999865
No 195
>PRK04213 GTP-binding protein; Provisional
Probab=99.78 E-value=2.5e-18 Score=169.97 Aligned_cols=155 Identities=28% Similarity=0.309 Sum_probs=106.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC--
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH-- 161 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~-- 161 (646)
...+|+++|.+|+|||||+++|.+.. ...+..+|+|..... ..+ ..+++|||||+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~---------------~~~~~~~~~t~~~~~--~~~------~~~~l~Dt~G~~~ 64 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK---------------VRVGKRPGVTRKPNH--YDW------GDFILTDLPGFGF 64 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---------------CccCCCCceeeCceE--Eee------cceEEEeCCcccc
Confidence 34689999999999999999997521 112234566665432 222 15899999995
Q ss_pred ---------ccchhhHhhhh----hhccceEEEEeCCCCcc-----------HhhHHHHHHHHHcCCCeEEEEeccCCCC
Q 043429 162 ---------VDFSYEVSRSL----AACEGALLVVDASQGVE-----------AQTLANVYLALENNLEIIPVLNKIDLPG 217 (646)
Q Consensus 162 ---------~df~~~~~~~l----~~ad~~IlVvDa~~g~~-----------~qt~~~~~~~~~~~~piIvViNKiDl~~ 217 (646)
+.|...+..++ ..++++++|+|++.... ..+...+..+...++|+++|+||+|+.+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~ 144 (201)
T PRK04213 65 MSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIK 144 (201)
T ss_pred ccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccC
Confidence 33444443444 34678899999875322 1223334444557899999999999975
Q ss_pred CCchHHHHHHHHHhCCCc------ccccccccccccchhHHHHHHHHhCCCC
Q 043429 218 AEPSRVAREIEEVIGLDC------TNAILCSAKEGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 218 ~~~~~~~~el~~~l~~~~------~~i~~vSAk~g~GV~eLl~~I~~~ip~P 263 (646)
.. .+..+++.+.++... .+++++||++| |+++++++|.+.++.-
T Consensus 145 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 145 NR-DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred cH-HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 54 345567777777521 25799999999 9999999999987653
No 196
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.78 E-value=1.9e-18 Score=167.45 Aligned_cols=154 Identities=19% Similarity=0.296 Sum_probs=112.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
+||+++|++|+|||||+++++..... +.... |..... ...+..++..+.+++|||||+.+|.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~-----------~~~~~------t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~ 63 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV-----------ESYYP------TIENTF-SKIIRYKGQDYHLEIVDTAGQDEYS 63 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc-----------cccCc------chhhhE-EEEEEECCEEEEEEEEECCChHhhH
Confidence 58999999999999999999863211 10000 110000 1112223345788999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcccc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~i 238 (646)
.....++..+|++++|+|.++..+++....|+..+. .++|+++|+||+|+...+ ......++.+.++ .++
T Consensus 64 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~---~~~ 140 (180)
T cd04137 64 ILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWG---AAF 140 (180)
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcC---CeE
Confidence 888899999999999999999988888877755543 367999999999986432 2222344444444 368
Q ss_pred cccccccccchhHHHHHHHHhC
Q 043429 239 ILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++||++|.|++++++++.+.+
T Consensus 141 ~~~Sa~~~~gv~~l~~~l~~~~ 162 (180)
T cd04137 141 LESSARENENVEEAFELLIEEI 162 (180)
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998765
No 197
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.78 E-value=1.7e-18 Score=184.45 Aligned_cols=153 Identities=24% Similarity=0.288 Sum_probs=126.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
+.|+|+|.+|+|||||.|||+...-++ ++..+|+|.+.......|. +..+.+|||+|.++..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AI--------------V~D~pGvTRDr~y~~~~~~----~~~f~lIDTgGl~~~~ 65 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAI--------------VSDTPGVTRDRIYGDAEWL----GREFILIDTGGLDDGD 65 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeE--------------eecCCCCccCCccceeEEc----CceEEEEECCCCCcCC
Confidence 579999999999999999998854443 4667899999988888888 7889999999998533
Q ss_pred ---------hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcc
Q 043429 166 ---------YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCT 236 (646)
Q Consensus 166 ---------~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~ 236 (646)
.....++..||++|||||+..|.+.++..........++|+++|+||+|-... + +...+.+++...
T Consensus 66 ~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~--e---~~~~efyslG~g 140 (444)
T COG1160 66 EDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKA--E---ELAYEFYSLGFG 140 (444)
T ss_pred chHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchh--h---hhHHHHHhcCCC
Confidence 23456888899999999999999999998888888888999999999996522 2 233444444445
Q ss_pred cccccccccccchhHHHHHHHHhCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+++++||..|.|+.+|++++++.+|
T Consensus 141 ~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 141 EPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred CceEeehhhccCHHHHHHHHHhhcC
Confidence 6899999999999999999999996
No 198
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.78 E-value=3.6e-18 Score=162.87 Aligned_cols=156 Identities=26% Similarity=0.353 Sum_probs=112.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
.++|+++|++|+|||||+++|+...... .+..++.|.......+.+. +..+++|||||+.+.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~----~~~~~iiDtpG~~~~ 63 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVI--------------VSDIAGTTRDSIDVPFEYD----GKKYTLIDTAGIRRK 63 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccee--------------ccCCCCCccCceeeEEEEC----CeeEEEEECCCCccc
Confidence 3689999999999999999998632111 1223444544433333332 566889999998654
Q ss_pred h-----------hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC---chHHHHHHHHH
Q 043429 165 S-----------YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE---PSRVAREIEEV 230 (646)
Q Consensus 165 ~-----------~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~---~~~~~~el~~~ 230 (646)
. .....+++.+|++++|+|++++.+.+....+..+...+.|+++|+||+|+.... .+...+.+.+.
T Consensus 64 ~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~ 143 (174)
T cd01895 64 GKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRK 143 (174)
T ss_pred cchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhh
Confidence 2 112345678999999999999988887777777777889999999999987653 23344555555
Q ss_pred hCC-CcccccccccccccchhHHHHHHHH
Q 043429 231 IGL-DCTNAILCSAKEGIGINEILNAIVK 258 (646)
Q Consensus 231 l~~-~~~~i~~vSAk~g~GV~eLl~~I~~ 258 (646)
++. ...+++++||++|.|++++++++.+
T Consensus 144 ~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 144 LPFLDYAPIVFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred cccccCCceEEEeccCCCCHHHHHHHHHH
Confidence 542 2357999999999999999999865
No 199
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.78 E-value=5.7e-19 Score=147.95 Aligned_cols=77 Identities=26% Similarity=0.451 Sum_probs=74.0
Q ss_pred ccEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeec
Q 043429 447 EPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKES 525 (646)
Q Consensus 447 EP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~ 525 (646)
|||+.++|.+|++|+|+|+++|++|||++.+++..+ +++.|++.+|++|+ +||.++||++|+|+|+|+++|+||++.
T Consensus 1 EPi~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~~~~P~~~~-~g~~~~Lr~~T~G~~~~~~~f~~y~~~ 77 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIKG-DEVTLEGTIPVATS-QDYQSELPSYTHGEGVLETEFKGYRPC 77 (78)
T ss_pred CCeEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecC-CEEEEEEEECHHHH-hhHHHHhHhhcCCeEEEEEEeCCeEEC
Confidence 899999999999999999999999999999998754 78999999999999 899999999999999999999999984
No 200
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.78 E-value=2.3e-18 Score=163.60 Aligned_cols=154 Identities=21% Similarity=0.319 Sum_probs=122.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
||+++|+.++|||||+++|...... . +...|+........+..++..+.+.+|||+|+.+|..
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~-----------~------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 63 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFP-----------E------NYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDS 63 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTT-----------S------SSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhccc-----------c------ccccccccccccccccccccccccccccccccccccc
Confidence 6899999999999999999873210 1 1112444444455555667789999999999999988
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc----CCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcccccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTNAIL 240 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~----~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~i~~ 240 (646)
.....++.+|++|+|+|.++..+++.+..|...... +.|+++|+||.|+.... ..+..+++.+.++ .++++
T Consensus 64 ~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~---~~~~e 140 (162)
T PF00071_consen 64 LRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG---VPYFE 140 (162)
T ss_dssp HHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT---SEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhC---CEEEE
Confidence 888899999999999999999999999999877652 58899999999987522 3344556666666 46999
Q ss_pred cccccccchhHHHHHHHHhC
Q 043429 241 CSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 241 vSAk~g~GV~eLl~~I~~~i 260 (646)
+||+++.||.++|..+++.+
T Consensus 141 ~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 141 VSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp EBTTTTTTHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999998764
No 201
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.78 E-value=2.3e-18 Score=173.07 Aligned_cols=155 Identities=12% Similarity=0.191 Sum_probs=114.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|+.|+|||||+.+|+... +.+. ...|+.... ...+..++..+.++||||+|++.|.
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~-----------f~~~------y~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~ 63 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA-----------YPGS------YVPTVFENY-TASFEIDKRRIELNMWDTSGSSYYD 63 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-----------CCCc------cCCccccce-EEEEEECCEEEEEEEEeCCCcHHHH
Confidence 489999999999999999997621 1111 111333222 2334455667899999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhH-HHHHHHHH---cCCCeEEEEeccCCCCCC--------------chHHHHHH
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE---NNLEIIPVLNKIDLPGAE--------------PSRVAREI 227 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~-~~~~~~~~---~~~piIvViNKiDl~~~~--------------~~~~~~el 227 (646)
.....+++.+|++|+|+|.++..+++.+ ..|..... .+.|+++|+||+|+.... ..+..+++
T Consensus 64 ~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ 143 (222)
T cd04173 64 NVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVL 143 (222)
T ss_pred HHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHH
Confidence 9888999999999999999999998887 45654443 478999999999985421 12233445
Q ss_pred HHHhCCCcccccccccccccc-hhHHHHHHHHhC
Q 043429 228 EEVIGLDCTNAILCSAKEGIG-INEILNAIVKRI 260 (646)
Q Consensus 228 ~~~l~~~~~~i~~vSAk~g~G-V~eLl~~I~~~i 260 (646)
.+.++. .++++|||+++.| |+++|+......
T Consensus 144 ak~~~~--~~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 144 AKQVGA--VSYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred HHHcCC--CEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 555542 3699999999985 999999988743
No 202
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.78 E-value=2.9e-18 Score=191.28 Aligned_cols=156 Identities=22% Similarity=0.318 Sum_probs=116.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
.+++|+|+|.+|+|||||+++|+..... ..+...|+|.+.......+. +..+++|||||+..
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~--------------~v~~~~gvT~d~~~~~~~~~----~~~~~l~DT~G~~~ 98 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREA--------------VVEDVPGVTRDRVSYDAEWN----GRRFTVVDTGGWEP 98 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcc--------------cccCCCCCCEeeEEEEEEEC----CcEEEEEeCCCcCC
Confidence 4579999999999999999999863211 12345677776655555554 67799999999863
Q ss_pred --------chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCc
Q 043429 164 --------FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDC 235 (646)
Q Consensus 164 --------f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~ 235 (646)
+...+..+++.||++|+|+|++++.+......+......++|+++|+||+|+.....+ ..++. .+++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~--~~~~~-~~g~~- 174 (472)
T PRK03003 99 DAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEAD--AAALW-SLGLG- 174 (472)
T ss_pred cchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchh--hHHHH-hcCCC-
Confidence 3334556889999999999999998876655555556678999999999998654321 12221 23443
Q ss_pred ccccccccccccchhHHHHHHHHhCCC
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
..+++||++|.|+++++++|++.++.
T Consensus 175 -~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 175 -EPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred -CeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 35799999999999999999998865
No 203
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.78 E-value=3.9e-19 Score=149.71 Aligned_cols=78 Identities=23% Similarity=0.304 Sum_probs=73.8
Q ss_pred ccEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeC-CCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeec
Q 043429 447 EPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFT-ESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKES 525 (646)
Q Consensus 447 EP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~-~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~ 525 (646)
|||++++|.+|++|+|+|+++|++|||.+.+++..+ +++++|++.+|++|+ +||.++||++|+|+|+|+++|+||++.
T Consensus 1 EPi~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~-~~~~~~Lrs~T~G~~~~~~~f~~y~~~ 79 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIES-FGFETDLRSATSGQAFPQLVFSHWEIV 79 (80)
T ss_pred CCEEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHH-hCcHHHHHhhCCCCcEEEEEeceeEEC
Confidence 899999999999999999999999999999998764 346999999999999 899999999999999999999999985
No 204
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.78 E-value=2.2e-18 Score=165.97 Aligned_cols=155 Identities=20% Similarity=0.212 Sum_probs=109.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
+||+|+|++|+|||||+++|+..... +.+ -.|+..... ..+..++..+.+.+|||||++++.
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~-----------~~~------~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~ 63 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP-----------EVY------VPTVFENYV-ADIEVDGKQVELALWDTAGQEDYD 63 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-----------CCC------CCccccceE-EEEEECCEEEEEEEEeCCCchhhh
Confidence 58999999999999999999873211 100 112221111 122334456789999999999988
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHH-HHHHHHH---cCCCeEEEEeccCCCCCCc--------------hHHHHHH
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLALE---NNLEIIPVLNKIDLPGAEP--------------SRVAREI 227 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~-~~~~~~~---~~~piIvViNKiDl~~~~~--------------~~~~~el 227 (646)
.....+++.+|++++|+|+++..+++... .|...+. .++|+++|+||+|+..... ....+++
T Consensus 64 ~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~ 143 (175)
T cd01870 64 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 143 (175)
T ss_pred hccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHH
Confidence 87778889999999999999887776664 4554444 3899999999999864321 1112233
Q ss_pred HHHhCCCcccccccccccccchhHHHHHHHHhC
Q 043429 228 EEVIGLDCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 228 ~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
...++ ..+++++||++|.|++++|++|.+..
T Consensus 144 ~~~~~--~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 144 ANKIG--AFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred HHHcC--CcEEEEeccccCcCHHHHHHHHHHHh
Confidence 33333 23689999999999999999998653
No 205
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.78 E-value=2.9e-18 Score=169.18 Aligned_cols=157 Identities=19% Similarity=0.240 Sum_probs=108.4
Q ss_pred eeEEEEcCCCCCHHHHHH-HHHHhcCCccccccccccccccccccccceeeee-eEEEE--------EEEecCCCeEEEE
Q 043429 86 RNFSIIAHIDHGKSTLAD-KLLQMTGTVQKREMKEQFLDNMDLERERGITIKL-QAARM--------RYVFENEPFCLNL 155 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~-~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~-~~~~~--------~~~~~~~~~~l~l 155 (646)
.+|+++|+.|+|||||+. ++.... .. ...+.. +.-.|+.. ..... ....++..+.++|
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~--~~----~~~f~~------~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~i 70 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKT--LT----QYQLLA------THVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRL 70 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCC--cc----cccCcc------ccCCceecccceeEEeeeccccceeeCCEEEEEEE
Confidence 589999999999999996 443311 00 000111 11123321 11110 1124566799999
Q ss_pred EeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHH-HHHHHHH---cCCCeEEEEeccCCCCC-------------
Q 043429 156 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLALE---NNLEIIPVLNKIDLPGA------------- 218 (646)
Q Consensus 156 iDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~-~~~~~~~---~~~piIvViNKiDl~~~------------- 218 (646)
|||+|+++. ....+++.+|++|+|+|.++..+++.+. .|...+. .+.|+++|+||+|+...
T Consensus 71 wDTaG~~~~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~ 148 (195)
T cd01873 71 WDTFGDHDK--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLA 148 (195)
T ss_pred EeCCCChhh--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccc
Confidence 999999762 3445789999999999999999998886 5766554 36899999999998641
Q ss_pred --------CchHHHHHHHHHhCCCcccccccccccccchhHHHHHHHHh
Q 043429 219 --------EPSRVAREIEEVIGLDCTNAILCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 219 --------~~~~~~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ 259 (646)
...+..+++.+.++. ++++|||++|.||+++|+.+++.
T Consensus 149 ~~~~~~~~V~~~e~~~~a~~~~~---~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 149 RPIKNADILPPETGRAVAKELGI---PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cccccCCccCHHHHHHHHHHhCC---EEEEcCCCCCCCHHHHHHHHHHh
Confidence 123344566666665 59999999999999999998864
No 206
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.78 E-value=2.5e-18 Score=165.88 Aligned_cols=151 Identities=19% Similarity=0.206 Sum_probs=108.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
+++++|++|+|||||+.+++..... ..+. .|. ..........++..+.+++|||||+.+|..
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~-----------~~~~------~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 63 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYP-----------TEYV------PTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDK 63 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-----------CCCC------Cce-eeeeeEEEEECCEEEEEEEEECCCChhhcc
Confidence 7899999999999999999762110 1111 121 112222333444567899999999999988
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHH-HHHHHHH---cCCCeEEEEeccCCCCCC--------------chHHHHHHH
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLA-NVYLALE---NNLEIIPVLNKIDLPGAE--------------PSRVAREIE 228 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~-~~~~~~~---~~~piIvViNKiDl~~~~--------------~~~~~~el~ 228 (646)
.+..+++.+|++|+|+|+++..+++... .|...+. .++|+++|+||+|+.... ..+...++.
T Consensus 64 ~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a 143 (173)
T cd04130 64 LRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALA 143 (173)
T ss_pred ccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHH
Confidence 8888999999999999999998888764 5655444 368999999999986421 112233444
Q ss_pred HHhCCCcccccccccccccchhHHHHHHH
Q 043429 229 EVIGLDCTNAILCSAKEGIGINEILNAIV 257 (646)
Q Consensus 229 ~~l~~~~~~i~~vSAk~g~GV~eLl~~I~ 257 (646)
+..+. .+++++||++|.||+++|+.++
T Consensus 144 ~~~~~--~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 144 EKIGA--CEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHhCC--CeEEEEeCCCCCCHHHHHHHHH
Confidence 44443 3699999999999999999875
No 207
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.78 E-value=4e-18 Score=160.78 Aligned_cols=153 Identities=23% Similarity=0.340 Sum_probs=110.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
||+|+|++|+|||||+++++..... +... . |.. ......+...+..+.+++|||||+.++..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~-----------~~~~-----~-~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 62 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFV-----------EEYD-----P-TIE-DSYRKTIVVDGETYTLDILDTAGQEEFSA 62 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-----------cCcC-----C-Chh-HeEEEEEEECCEEEEEEEEECCChHHHHH
Confidence 6899999999999999999863210 0000 0 111 11122233333468899999999999999
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCccccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTNAI 239 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~i~ 239 (646)
.....++.+|++++|+|.++..+......|...+. .++|+++|+||+|+.... ..+...++...++ .+++
T Consensus 63 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~ 139 (160)
T cd00876 63 MRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWG---CPFI 139 (160)
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcC---CcEE
Confidence 89999999999999999998877766666654443 379999999999987632 2223334444444 4699
Q ss_pred ccccccccchhHHHHHHHHhC
Q 043429 240 LCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 240 ~vSAk~g~GV~eLl~~I~~~i 260 (646)
++||++|.|+++++++|.+++
T Consensus 140 ~~S~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 140 ETSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred EeccCCCCCHHHHHHHHHhhC
Confidence 999999999999999998754
No 208
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.77 E-value=1.6e-18 Score=163.54 Aligned_cols=146 Identities=26% Similarity=0.333 Sum_probs=109.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
+|+++|.+|+|||||+|+|++.. ..+..-+|+|+......+.+. +..+.++||||..++..
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~---------------~~v~n~pG~Tv~~~~g~~~~~----~~~~~lvDlPG~ysl~~ 62 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK---------------QKVGNWPGTTVEKKEGIFKLG----DQQVELVDLPGIYSLSS 62 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS---------------EEEEESTTSSSEEEEEEEEET----TEEEEEEE----SSSSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC---------------ceecCCCCCCeeeeeEEEEec----CceEEEEECCCcccCCC
Confidence 79999999999999999998732 223456889998887777765 68999999999765432
Q ss_pred ------hHhhhh--hhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC-chHHHHHHHHHhCCCccc
Q 043429 167 ------EVSRSL--AACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE-PSRVAREIEEVIGLDCTN 237 (646)
Q Consensus 167 ------~~~~~l--~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~-~~~~~~el~~~l~~~~~~ 237 (646)
....++ ...|++++|+|+++ -.+++....+..+.++|+++|+||+|..... ..-..+.+.+.+|.+
T Consensus 63 ~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~p--- 137 (156)
T PF02421_consen 63 KSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVP--- 137 (156)
T ss_dssp SSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS----
T ss_pred CCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCC---
Confidence 123344 46899999999987 3455666677788999999999999975322 223357788888875
Q ss_pred ccccccccccchhHHHHHH
Q 043429 238 AILCSAKEGIGINEILNAI 256 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I 256 (646)
++++||++|.|+++|+++|
T Consensus 138 vi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 138 VIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp EEEEBTTTTBTHHHHHHHH
T ss_pred EEEEEeCCCcCHHHHHhhC
Confidence 9999999999999999875
No 209
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.77 E-value=2.7e-18 Score=162.00 Aligned_cols=146 Identities=24% Similarity=0.298 Sum_probs=107.1
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchhh--
Q 043429 90 IIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYE-- 167 (646)
Q Consensus 90 IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~~-- 167 (646)
|+|++|+|||||++++.+... .....+|+|+......+.+. +..+++|||||+.++...
T Consensus 1 l~G~~~~GKssl~~~~~~~~~---------------~~~~~~~~t~~~~~~~~~~~----~~~~~liDtpG~~~~~~~~~ 61 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ---------------KVGNWPGVTVEKKEGRFKLG----GKEIEIVDLPGTYSLSPYSE 61 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc---------------cccCCCCcccccceEEEeeC----CeEEEEEECCCccccCCCCh
Confidence 589999999999999976311 12234677887776666654 578999999999887642
Q ss_pred ----Hhhhhh--hccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC-chHHHHHHHHHhCCCcccccc
Q 043429 168 ----VSRSLA--ACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE-PSRVAREIEEVIGLDCTNAIL 240 (646)
Q Consensus 168 ----~~~~l~--~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~-~~~~~~el~~~l~~~~~~i~~ 240 (646)
...++. .+|++++|+|+++... ....+......++|+++|+||+|+.+.. .....+++.+.++. ++++
T Consensus 62 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~---~~~~ 136 (158)
T cd01879 62 DEKVARDFLLGEKPDLIVNVVDATNLER--NLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGV---PVVP 136 (158)
T ss_pred hHHHHHHHhcCCCCcEEEEEeeCCcchh--HHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCC---CeEE
Confidence 344554 8999999999987533 2333344556789999999999997643 22223455555554 5899
Q ss_pred cccccccchhHHHHHHHHh
Q 043429 241 CSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 241 vSAk~g~GV~eLl~~I~~~ 259 (646)
+||++|.|++++++++...
T Consensus 137 iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 137 TSARKGEGIDELKDAIAEL 155 (158)
T ss_pred EEccCCCCHHHHHHHHHHH
Confidence 9999999999999998765
No 210
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.77 E-value=1.2e-18 Score=146.12 Aligned_cols=77 Identities=32% Similarity=0.516 Sum_probs=73.8
Q ss_pred ccEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeec
Q 043429 447 EPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKES 525 (646)
Q Consensus 447 EP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~ 525 (646)
|||++++|.+|++|+|+|+++|++|||++.+++..+ +++.|++.+|++|+ +||.++||++|+|+|+|+++|+||++.
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~~~iP~~e~-~~~~~~Lr~~T~G~a~~~~~f~~y~~~ 77 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESRG-GWKVIKAEVPLAEM-FGYSTDLRSLTQGRGSFTMEFSHYEEV 77 (78)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHHcCCceEceeccC-CcEEEEEEcCHHHH-hChHHHHHhhcCCeEEEEEEecceeEC
Confidence 899999999999999999999999999999998764 68999999999999 899999999999999999999999985
No 211
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.77 E-value=4.6e-18 Score=162.07 Aligned_cols=147 Identities=15% Similarity=0.220 Sum_probs=104.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
+|+++|+.|+|||||+.+++... .. .... .+.. . ....+..++..+.+.+|||+|+.+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~--f~---------~~~~------~~~~-~-~~~~i~~~~~~~~l~i~D~~g~~~--- 59 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGS--YV---------QLES------PEGG-R-FKKEVLVDGQSHLLLIRDEGGAPD--- 59 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCC--CC---------CCCC------CCcc-c-eEEEEEECCEEEEEEEEECCCCCc---
Confidence 79999999999999999997621 10 0000 0111 1 112233445567899999999975
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCC----chHHHHHHHHHhCCCccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAE----PSRVAREIEEVIGLDCTN 237 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~----~~~~~~el~~~l~~~~~~ 237 (646)
..+++.+|++++|+|.++..+++....|...+. .++|+++|+||+|+.... ..+..+++.+..+ ..+
T Consensus 60 --~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~--~~~ 135 (158)
T cd04103 60 --AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMK--RCS 135 (158)
T ss_pred --hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhC--CCc
Confidence 346788999999999999999999887776554 357999999999985322 1222334444332 246
Q ss_pred ccccccccccchhHHHHHHHHh
Q 043429 238 AILCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~ 259 (646)
+++|||++|.||+++|+.+.+.
T Consensus 136 ~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 136 YYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred EEEEecCCCCCHHHHHHHHHhh
Confidence 9999999999999999999864
No 212
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.77 E-value=5.5e-18 Score=158.91 Aligned_cols=147 Identities=22% Similarity=0.279 Sum_probs=104.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchhh
Q 043429 88 FSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYE 167 (646)
Q Consensus 88 I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~~ 167 (646)
|+|+|++|+|||||+++|...... . + .-.|+........+. ...+.+|||||+..|...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~-----------~----~--~~~t~~~~~~~~~~~----~~~~~~~D~~g~~~~~~~ 60 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS-----------E----D--TIPTVGFNMRKVTKG----NVTLKVWDLGGQPRFRSM 60 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC-----------c----C--ccCCCCcceEEEEEC----CEEEEEEECCCCHhHHHH
Confidence 799999999999999999763211 0 0 111333333333222 588999999999999999
Q ss_pred HhhhhhhccceEEEEeCCCCccHhhHHHHHHHH-H----cCCCeEEEEeccCCCCCCchHHHHHHHHHhCC-----Cccc
Q 043429 168 VSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL-----DCTN 237 (646)
Q Consensus 168 ~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~-~----~~~piIvViNKiDl~~~~~~~~~~el~~~l~~-----~~~~ 237 (646)
+..++..+|++++|+|+++.........|.... . .++|+++|+||+|+.+..... ++.+.++. ...+
T Consensus 61 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~ 137 (159)
T cd04159 61 WERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVD---ELIEQMNLKSITDREVS 137 (159)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHH---HHHHHhCcccccCCceE
Confidence 999999999999999999876655544443332 2 478999999999987654321 22222221 2236
Q ss_pred ccccccccccchhHHHHHHHH
Q 043429 238 AILCSAKEGIGINEILNAIVK 258 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~ 258 (646)
++++||++|.|+++++++|.+
T Consensus 138 ~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 138 CYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EEEEEeccCCChHHHHHHHhh
Confidence 899999999999999999865
No 213
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.76 E-value=9.9e-18 Score=167.77 Aligned_cols=158 Identities=17% Similarity=0.225 Sum_probs=120.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
...+|+++|++|+|||||+++++... . ......|+........+..+++.+.+++|||||+.+
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~--~---------------~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~ 70 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGE--F---------------EKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEK 70 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCC--C---------------CCCCCCccceEEEEEEEEECCeEEEEEEEECCCchh
Confidence 34699999999999999999887521 1 111223555555555555566789999999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH---cCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcccccc
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAIL 240 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~---~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~~ 240 (646)
|...+..++..++++++|+|.++..+++++..|...+. .++|+++|+||+|+..........++.+..+. .+++
T Consensus 71 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~e 147 (215)
T PTZ00132 71 FGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNL---QYYD 147 (215)
T ss_pred hhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCC---EEEE
Confidence 98888888999999999999999999998888876554 47899999999998654322212233333333 5899
Q ss_pred cccccccchhHHHHHHHHhCC
Q 043429 241 CSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 241 vSAk~g~GV~eLl~~I~~~ip 261 (646)
+||++|.|+++++.+|.+.+.
T Consensus 148 ~Sa~~~~~v~~~f~~ia~~l~ 168 (215)
T PTZ00132 148 ISAKSNYNFEKPFLWLARRLT 168 (215)
T ss_pred EeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999988764
No 214
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.76 E-value=1.4e-18 Score=146.22 Aligned_cols=78 Identities=21% Similarity=0.283 Sum_probs=73.2
Q ss_pred ccEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeCCCE-EEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeec
Q 043429 447 EPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESR-ASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKES 525 (646)
Q Consensus 447 EP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~~-~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~ 525 (646)
|||+.++|.+|++|+|+|+++|++|||++.+++..+++. ..|++++|++|+ ++|.++|||+|+|.|+|.++|+||++.
T Consensus 1 EPi~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~-~~~~~~Lrs~T~G~~~~~~~f~~y~~v 79 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIES-FGFETDLRVHTQGQAFCQSVFDHWQIV 79 (80)
T ss_pred CCEEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHH-hChHHHHHhhCCCceEEEEEeCeeeEC
Confidence 899999999999999999999999999999988655443 899999999999 899999999999999999999999985
No 215
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.76 E-value=7.6e-18 Score=169.55 Aligned_cols=154 Identities=18% Similarity=0.164 Sum_probs=108.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
+|+++|.+|+|||||+++|+...... . ....|.........+..++..+.+++|||||+..+
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~----------~------~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~-- 63 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDD----------H------AYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW-- 63 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCc----------c------CcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--
Confidence 79999999999999999997521100 0 01112211122222333445788999999999832
Q ss_pred hHhhhhh-hccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCCc--hHHHHHHHHHhCCCcccc
Q 043429 167 EVSRSLA-ACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAEP--SRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 167 ~~~~~l~-~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~~--~~~~~el~~~l~~~~~~i 238 (646)
....++. .+|++++|+|+++..+++....|...+. .++|+++|+||+|+..... .+...++...++. ++
T Consensus 64 ~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~---~~ 140 (221)
T cd04148 64 TEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDC---KF 140 (221)
T ss_pred HHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCC---eE
Confidence 2234556 8999999999999988887777766543 3689999999999865432 2223344444443 58
Q ss_pred cccccccccchhHHHHHHHHhCC
Q 043429 239 ILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+++||++|.||+++|++|++.+.
T Consensus 141 ~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 141 IETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred EEecCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998774
No 216
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.76 E-value=7.5e-18 Score=167.04 Aligned_cols=154 Identities=29% Similarity=0.325 Sum_probs=104.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
+..++|+|+|++|||||||+++|+..... .....+.|+......+.+. ....+.+|||||+.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~---------------~~~~~~~t~~~~~~~~~~~---~~~~~~i~Dt~G~~ 100 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVY---------------AEDQLFATLDPTTRRLRLP---DGREVLLTDTVGFI 100 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhc---------------cCCccceeccceeEEEEec---CCceEEEeCCCccc
Confidence 34579999999999999999999873211 1112233444443333332 23489999999985
Q ss_pred cc-hhh-------HhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCCchHHHHHHHHH
Q 043429 163 DF-SYE-------VSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAEPSRVAREIEEV 230 (646)
Q Consensus 163 df-~~~-------~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~~~~~~~el~~~ 230 (646)
+. ... ....+..+|++++|+|++++........|...+. .++|+++|+||+|+....... ..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~------~~ 174 (204)
T cd01878 101 RDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE------ER 174 (204)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH------HH
Confidence 42 111 1123567999999999998877766655554443 368999999999986543221 12
Q ss_pred hCCCcccccccccccccchhHHHHHHHHhC
Q 043429 231 IGLDCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 231 l~~~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
......+++++||++|.|+++++++|.+.+
T Consensus 175 ~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 175 LEAGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred hhcCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 222334699999999999999999998754
No 217
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.76 E-value=9.4e-18 Score=185.33 Aligned_cols=154 Identities=25% Similarity=0.327 Sum_probs=118.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc---
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD--- 163 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d--- 163 (646)
+|+|+|++|+|||||+|+|+.....+ ++...|+|.+.......|. +..+++|||||+..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~--------------v~~~~g~t~d~~~~~~~~~----~~~~~liDTpG~~~~~~ 62 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAI--------------VSDTPGVTRDRKYGDAEWG----GREFILIDTGGIEEDDD 62 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcce--------------ecCCCCcccCceEEEEEEC----CeEEEEEECCCCCCcch
Confidence 48999999999999999998632211 2345677777766666665 67899999999843
Q ss_pred -----chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcccc
Q 043429 164 -----FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 164 -----f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i 238 (646)
+...+..+++.+|++++|+|+..+....+...+....+.++|+++|+||+|+...... ..++. .+++ .++
T Consensus 63 ~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~--~~~~~-~lg~--~~~ 137 (429)
T TIGR03594 63 GLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV--AAEFY-SLGF--GEP 137 (429)
T ss_pred hHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc--HHHHH-hcCC--CCe
Confidence 3345666889999999999999998888876666666789999999999998754321 12222 2343 358
Q ss_pred cccccccccchhHHHHHHHHhCCCC
Q 043429 239 ILCSAKEGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~ip~P 263 (646)
+++||++|.|++++++++.+.++..
T Consensus 138 ~~vSa~~g~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 138 IPISAEHGRGIGDLLDAILELLPEE 162 (429)
T ss_pred EEEeCCcCCChHHHHHHHHHhcCcc
Confidence 9999999999999999999998764
No 218
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.76 E-value=6.9e-19 Score=160.28 Aligned_cols=156 Identities=23% Similarity=0.263 Sum_probs=123.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
-.+++++|...+|||||+-|+++... .-..-.|+.+++.+......+....++||||+|+++|
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkF-----------------n~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErf 75 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKF-----------------NCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERF 75 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhc-----------------chhhHHHHHHHHhhcccccccceeeeeeeeccchHhh
Confidence 46899999999999999999987321 1122235565555555566667889999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc----CCCeEEEEeccCCCCCCc--hHHHHHHHHHhCCCcccc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPGAEP--SRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~----~~piIvViNKiDl~~~~~--~~~~~el~~~l~~~~~~i 238 (646)
...-.-|++.++|++||+|.++..++|-+++|...++. .+.+++|+||+||...+. .+..++..+..|. .+
T Consensus 76 HALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA---~y 152 (218)
T KOG0088|consen 76 HALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGA---LY 152 (218)
T ss_pred hccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhch---hh
Confidence 99999999999999999999999999999999887763 566999999999975442 2223344444443 48
Q ss_pred cccccccccchhHHHHHHHHhC
Q 043429 239 ILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++||+.+.||.++|+.+...+
T Consensus 153 ~eTSAk~N~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 153 METSAKDNVGISELFESLTAKM 174 (218)
T ss_pred eecccccccCHHHHHHHHHHHH
Confidence 9999999999999999887644
No 219
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=1.6e-17 Score=183.84 Aligned_cols=154 Identities=25% Similarity=0.326 Sum_probs=114.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc--
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD-- 163 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d-- 163 (646)
++|+|+|++|+|||||+++|+.....+ .+...|+|.+.......+. +..+++|||||+.+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~--------------v~~~~~~t~d~~~~~~~~~----~~~~~liDT~G~~~~~ 63 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAI--------------VADTPGVTRDRIYGEAEWL----GREFILIDTGGIEPDD 63 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee--------------eCCCCCCcccceEEEEEEC----CcEEEEEECCCCCCcc
Confidence 589999999999999999997632211 2234566766665555554 68899999999987
Q ss_pred ------chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCccc
Q 043429 164 ------FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTN 237 (646)
Q Consensus 164 ------f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~ 237 (646)
+...+..++..+|++|+|+|++++.+..+...+....+.+.|+++|+||+|+... +....++ ..+...+
T Consensus 64 ~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~--~~~~~~~---~~lg~~~ 138 (435)
T PRK00093 64 DGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDE--EADAYEF---YSLGLGE 138 (435)
T ss_pred hhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccc--hhhHHHH---HhcCCCC
Confidence 2233456788999999999999988777665555566679999999999997542 1222222 2223335
Q ss_pred ccccccccccchhHHHHHHHHhCCC
Q 043429 238 AILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
++++||++|.|+++++++|.+..+.
T Consensus 139 ~~~iSa~~g~gv~~l~~~I~~~~~~ 163 (435)
T PRK00093 139 PYPISAEHGRGIGDLLDAILEELPE 163 (435)
T ss_pred CEEEEeeCCCCHHHHHHHHHhhCCc
Confidence 7999999999999999999885543
No 220
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.75 E-value=1.1e-17 Score=156.99 Aligned_cols=146 Identities=27% Similarity=0.325 Sum_probs=106.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
+|+++|++|+|||||+++++...... ....+++|.........+. +..+++|||||+.++..
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~----~~~~~i~DtpG~~~~~~ 64 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAI--------------VSDIAGTTRDVIEESIDIG----GIPVRLIDTAGIRETED 64 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEe--------------ccCCCCCccceEEEEEEeC----CEEEEEEECCCcCCCcc
Confidence 79999999999999999998632111 1123455555444344333 67899999999987653
Q ss_pred h--------HhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcccc
Q 043429 167 E--------VSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 167 ~--------~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i 238 (646)
. ....+..+|++++|+|+++..+......+.. ..+.|+++|+||+|+...... .......++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~--------~~~~~~~~~ 134 (157)
T cd04164 65 EIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL--------LSLLAGKPI 134 (157)
T ss_pred hHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc--------ccccCCCce
Confidence 2 3356778999999999998777666655544 568999999999998754432 112223469
Q ss_pred cccccccccchhHHHHHHHHhC
Q 043429 239 ILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++||++|.|+++++++|.+.+
T Consensus 135 ~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 135 IAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 9999999999999999998754
No 221
>COG1159 Era GTPase [General function prediction only]
Probab=99.75 E-value=8.8e-18 Score=170.31 Aligned_cols=157 Identities=20% Similarity=0.251 Sum_probs=114.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc--
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD-- 163 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d-- 163 (646)
--|+|+|.||+|||||+|+|++..-++. ++...+|...-.. ....++.++.++||||...
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIv--------------S~k~QTTR~~I~G----I~t~~~~QiIfvDTPGih~pk 68 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIV--------------SPKPQTTRNRIRG----IVTTDNAQIIFVDTPGIHKPK 68 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEee--------------cCCcchhhhheeE----EEEcCCceEEEEeCCCCCCcc
Confidence 3689999999999999999998544432 2222233322111 1223478999999999754
Q ss_pred ------chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCc--hHHHHHHHHHhCCCc
Q 043429 164 ------FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEP--SRVAREIEEVIGLDC 235 (646)
Q Consensus 164 ------f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~--~~~~~el~~~l~~~~ 235 (646)
.......++..+|.+++|+|++++....+...+......+.|+++++||+|...... ....+.+...+.+
T Consensus 69 ~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f-- 146 (298)
T COG1159 69 HALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPF-- 146 (298)
T ss_pred hHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCc--
Confidence 223455688899999999999998877666555555555789999999999866544 2333444444444
Q ss_pred ccccccccccccchhHHHHHHHHhCCC
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
..++++||++|.|++.|++.+.+++|+
T Consensus 147 ~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 147 KEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred ceEEEeeccccCCHHHHHHHHHHhCCC
Confidence 379999999999999999999999975
No 222
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.75 E-value=9e-18 Score=178.44 Aligned_cols=169 Identities=21% Similarity=0.240 Sum_probs=119.0
Q ss_pred cccccCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEE
Q 043429 75 DRLLKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLN 154 (646)
Q Consensus 75 ~~~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~ 154 (646)
+..-.++.+-+..|+|||.+|+|||||+++|...... +....++|.......+.+. ....+.
T Consensus 148 ~~~~~lelk~~adVglVG~PNaGKSTLln~ls~a~~~---------------va~ypfTT~~p~~G~v~~~---~~~~~~ 209 (335)
T PRK12299 148 ERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPK---------------IADYPFTTLHPNLGVVRVD---DYKSFV 209 (335)
T ss_pred EEEEEEEEcccCCEEEEcCCCCCHHHHHHHHHcCCCc---------------cCCCCCceeCceEEEEEeC---CCcEEE
Confidence 3334445566789999999999999999999762111 1223456777766666553 256799
Q ss_pred EEeCCCCcc-------chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH------cCCCeEEEEeccCCCCCCch
Q 043429 155 LIDTPGHVD-------FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE------NNLEIIPVLNKIDLPGAEPS 221 (646)
Q Consensus 155 liDTPG~~d-------f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~------~~~piIvViNKiDl~~~~~~ 221 (646)
+|||||..+ +...+.+.+..|+++++|+|+++..+.+....|...+. .++|+++|+||+|+..+...
T Consensus 210 i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~ 289 (335)
T PRK12299 210 IADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEE 289 (335)
T ss_pred EEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhH
Confidence 999999853 33455667778999999999998766777777766554 36899999999998754321
Q ss_pred HHHHHHHHHhCCCcccccccccccccchhHHHHHHHHhCCC
Q 043429 222 RVAREIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 222 ~~~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
. .+++.........+++++||+++.|+++++++|.+.++.
T Consensus 290 ~-~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 290 R-EKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred H-HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 1 111221111112468999999999999999999987753
No 223
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.75 E-value=3.2e-18 Score=143.82 Aligned_cols=78 Identities=38% Similarity=0.581 Sum_probs=74.8
Q ss_pred ccEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeec
Q 043429 447 EPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKES 525 (646)
Q Consensus 447 EP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~ 525 (646)
|||+.++|.+|++|+|+|+++|++|||++.+++..++++..|++.+|++|+ +||.++||++|+|+|+|.++|+||++.
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~~~~~~i~~~iP~~e~-~g~~~~lr~~T~G~~~~~~~f~~y~~~ 78 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAELPLAEM-FGFATDLRSLTQGRASFSMEFSHYEPV 78 (79)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecCCCeEEEEEECCHHHH-cCcHHHhhhhcCCeEEEEEEecceEeC
Confidence 899999999999999999999999999999998765478999999999999 899999999999999999999999985
No 224
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.75 E-value=1.2e-17 Score=160.53 Aligned_cols=149 Identities=23% Similarity=0.284 Sum_probs=106.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+|+|++|+|||||+++|.+..... .....|.+ ...+.+. +..+.+|||||+..+
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~--------------~~~t~g~~----~~~i~~~----~~~~~~~D~~G~~~~ 71 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISH--------------ITPTQGFN----IKTVQSD----GFKLNVWDIGGQRAI 71 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcc--------------cCCCCCcc----eEEEEEC----CEEEEEEECCCCHHH
Confidence 4689999999999999999997631100 11112222 2223332 678999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHH-----HcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCc----
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-----ENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDC---- 235 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~-----~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~---- 235 (646)
...+..+++.+|++++|+|+++.........+.... ..++|+++++||+|+..... .+++.+.+++..
T Consensus 72 ~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~i~~~l~~~~~~~~ 148 (173)
T cd04155 72 RPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP---AEEIAEALNLHDLRDR 148 (173)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC---HHHHHHHcCCcccCCC
Confidence 888889999999999999999865554433333222 24799999999999865442 233444444431
Q ss_pred -ccccccccccccchhHHHHHHHH
Q 043429 236 -TNAILCSAKEGIGINEILNAIVK 258 (646)
Q Consensus 236 -~~i~~vSAk~g~GV~eLl~~I~~ 258 (646)
.+++++||++|+|++++++||++
T Consensus 149 ~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 149 TWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred eEEEEEeECCCCCCHHHHHHHHhc
Confidence 24789999999999999999975
No 225
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.75 E-value=1.1e-17 Score=159.96 Aligned_cols=152 Identities=18% Similarity=0.214 Sum_probs=106.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
||+++|++|+|||||+++|+...... + ... |+. ..........+..+.+++|||||+.+|..
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~---------------~-~~~-~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~ 63 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPT---------------E-YVP-TVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDR 63 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC---------------C-CCC-cee-eeeEEEEEECCEEEEEEEEeCCCcccccc
Confidence 79999999999999999998732100 0 000 111 11111222334578899999999998877
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHH-HHHHHHH---cCCCeEEEEeccCCCCCCch-------------HHHHHHHH
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLA-NVYLALE---NNLEIIPVLNKIDLPGAEPS-------------RVAREIEE 229 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~-~~~~~~~---~~~piIvViNKiDl~~~~~~-------------~~~~el~~ 229 (646)
....+++.+|++++|+|+++..+++... .|...+. .++|+++|+||+|+...... +...++..
T Consensus 64 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~ 143 (171)
T cd00157 64 LRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAK 143 (171)
T ss_pred cchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHH
Confidence 7777888999999999999877766543 3444333 36999999999998765422 12223333
Q ss_pred HhCCCcccccccccccccchhHHHHHHHH
Q 043429 230 VIGLDCTNAILCSAKEGIGINEILNAIVK 258 (646)
Q Consensus 230 ~l~~~~~~i~~vSAk~g~GV~eLl~~I~~ 258 (646)
.++. .+++++||++|.|+++++++|++
T Consensus 144 ~~~~--~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 144 EIGA--IGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HhCC--eEEEEeecCCCCCHHHHHHHHhh
Confidence 3333 36999999999999999999875
No 226
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.75 E-value=2.3e-17 Score=162.01 Aligned_cols=168 Identities=20% Similarity=0.278 Sum_probs=116.0
Q ss_pred cccccCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEE
Q 043429 75 DRLLKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLN 154 (646)
Q Consensus 75 ~~~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~ 154 (646)
+.+..++.+..++|+++|++|+|||||+++|+...... ......|.|........ +..+.
T Consensus 14 ~~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~-------------~~~~~~~~t~~~~~~~~-------~~~l~ 73 (196)
T PRK00454 14 PKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLA-------------RTSKTPGRTQLINFFEV-------NDKLR 73 (196)
T ss_pred ccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcc-------------cccCCCCceeEEEEEec-------CCeEE
Confidence 44677777888999999999999999999998632110 11223344544332211 36799
Q ss_pred EEeCCCCc----------cchhhHhhhhhhc---cceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC-c
Q 043429 155 LIDTPGHV----------DFSYEVSRSLAAC---EGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE-P 220 (646)
Q Consensus 155 liDTPG~~----------df~~~~~~~l~~a---d~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~-~ 220 (646)
||||||+. .+......+++.+ +++++|+|++.+.+..+...+......++|+++++||+|+.... .
T Consensus 74 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~ 153 (196)
T PRK00454 74 LVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGER 153 (196)
T ss_pred EeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHH
Confidence 99999963 2333444555554 57888899988776665544444455789999999999986543 3
Q ss_pred hHHHHHHHHHhCCCcccccccccccccchhHHHHHHHHhCCC
Q 043429 221 SRVAREIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 221 ~~~~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+...+++.+.++....+++++||++|.|++++++.|.+.+.+
T Consensus 154 ~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 154 KKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 334445555554323468999999999999999999887643
No 227
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.74 E-value=1.2e-17 Score=162.25 Aligned_cols=155 Identities=19% Similarity=0.262 Sum_probs=109.1
Q ss_pred ccccCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEE
Q 043429 76 RLLKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNL 155 (646)
Q Consensus 76 ~~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~l 155 (646)
.+++++..+..+|+|+|++|+|||||+++|+...... ......|.|..... |..+ ..+.+
T Consensus 9 ~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~-------------~~~~~~~~t~~~~~----~~~~---~~~~l 68 (179)
T TIGR03598 9 KLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLA-------------RTSKTPGRTQLINF----FEVN---DGFRL 68 (179)
T ss_pred cHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcc-------------cccCCCCcceEEEE----EEeC---CcEEE
Confidence 3556677788899999999999999999998632110 01123344544332 2221 26899
Q ss_pred EeCCCCcc----------chhhHhhhhhh---ccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC-ch
Q 043429 156 IDTPGHVD----------FSYEVSRSLAA---CEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE-PS 221 (646)
Q Consensus 156 iDTPG~~d----------f~~~~~~~l~~---ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~-~~ 221 (646)
|||||+.+ +......+++. +|++++|+|++++.+.++...+..+...++|+++|+||+|+.... .+
T Consensus 69 iDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~ 148 (179)
T TIGR03598 69 VDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELN 148 (179)
T ss_pred EeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHH
Confidence 99999642 33334455553 579999999999998888877777777899999999999986432 34
Q ss_pred HHHHHHHHHhCCC--cccccccccccccchh
Q 043429 222 RVAREIEEVIGLD--CTNAILCSAKEGIGIN 250 (646)
Q Consensus 222 ~~~~el~~~l~~~--~~~i~~vSAk~g~GV~ 250 (646)
...+++++.++.. ..+++++||++|+|++
T Consensus 149 ~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 149 KQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred HHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 4556666666532 2379999999999984
No 228
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.74 E-value=2.7e-17 Score=159.51 Aligned_cols=153 Identities=27% Similarity=0.388 Sum_probs=114.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
++-.+|+++|..|+|||||+++|... ... ....|++.....+.+. ++.+++||.+|+.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~--~~~----------------~~~pT~g~~~~~i~~~----~~~~~~~d~gG~~ 69 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNG--EIS----------------ETIPTIGFNIEEIKYK----GYSLTIWDLGGQE 69 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSS--SEE----------------EEEEESSEEEEEEEET----TEEEEEEEESSSG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhc--ccc----------------ccCcccccccceeeeC----cEEEEEEeccccc
Confidence 44579999999999999999999641 110 1222555555556664 8999999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHH-HHHHHHH----cCCCeEEEEeccCCCCCCchHHHHHHHHHhC---C-
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLALE----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIG---L- 233 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~-~~~~~~~----~~~piIvViNKiDl~~~~~~~~~~el~~~l~---~- 233 (646)
.+...|..++..+|++|+|+|+++....+... .+...+. .++|+++++||+|++++...+ ++.+.++ +
T Consensus 70 ~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~---~i~~~l~l~~l~ 146 (175)
T PF00025_consen 70 SFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEE---EIKEYLGLEKLK 146 (175)
T ss_dssp GGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHH---HHHHHTTGGGTT
T ss_pred cccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhh---HHHhhhhhhhcc
Confidence 99999999999999999999999865544433 3333333 379999999999998865533 3333333 2
Q ss_pred --CcccccccccccccchhHHHHHHHHhC
Q 043429 234 --DCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 234 --~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
....++.|||++|+|+.+.++||.+.+
T Consensus 147 ~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 147 NKRPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp SSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred cCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 233588999999999999999998753
No 229
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.74 E-value=8e-18 Score=160.48 Aligned_cols=143 Identities=17% Similarity=0.262 Sum_probs=100.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc---
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV--- 162 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~--- 162 (646)
++|+++|++|+|||||+++|.... ...+ .+....|.. . ++|||||..
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~----------------~~~~--------~~~~v~~~~--~----~~iDtpG~~~~~ 51 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNY----------------TLAR--------KTQAVEFND--K----GDIDTPGEYFSH 51 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCC----------------ccCc--------cceEEEECC--C----CcccCCccccCC
Confidence 489999999999999999985411 0000 111122321 1 379999973
Q ss_pred -cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCccccccc
Q 043429 163 -DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILC 241 (646)
Q Consensus 163 -df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~~v 241 (646)
++...+..++..+|++++|+|++++.+..+. |......+.|+++++||+|+++.+.+.. .++.+.++.. .|++++
T Consensus 52 ~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~--~~~~~~~~~~ii~v~nK~Dl~~~~~~~~-~~~~~~~~~~-~p~~~~ 127 (158)
T PRK15467 52 PRWYHALITTLQDVDMLIYVHGANDPESRLPA--GLLDIGVSKRQIAVISKTDMPDADVAAT-RKLLLETGFE-EPIFEL 127 (158)
T ss_pred HHHHHHHHHHHhcCCEEEEEEeCCCcccccCH--HHHhccCCCCeEEEEEccccCcccHHHH-HHHHHHcCCC-CCEEEE
Confidence 3444445567899999999999988766443 3333345789999999999977654433 3333344542 579999
Q ss_pred ccccccchhHHHHHHHHhCCC
Q 043429 242 SAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 242 SAk~g~GV~eLl~~I~~~ip~ 262 (646)
||++|+|++++++++.+.++.
T Consensus 128 Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 128 NSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred ECCCccCHHHHHHHHHHhchh
Confidence 999999999999999887754
No 230
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=5.6e-18 Score=175.55 Aligned_cols=242 Identities=22% Similarity=0.289 Sum_probs=191.1
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHHHhcCCcccccc----------------ccccccccccccccceeeeeeEEEEEE
Q 043429 81 PASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREM----------------KEQFLDNMDLERERGITIKLQAARMRY 144 (646)
Q Consensus 81 ~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~----------------~~~~~d~~~~e~e~giTi~~~~~~~~~ 144 (646)
++....|+.++||.++||||+-..++..++.++++.. -.|.+|+...||+.|-|+....+.++-
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 3456679999999999999999999999998887642 157899999999999999998887766
Q ss_pred EecCCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCc-------cHhhHHHHHHHHHcCCC-eEEEEeccCCC
Q 043429 145 VFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV-------EAQTLANVYLALENNLE-IIPVLNKIDLP 216 (646)
Q Consensus 145 ~~~~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~-------~~qt~~~~~~~~~~~~p-iIvViNKiDl~ 216 (646)
. ...+++.|+|||..|..++......||..+||++|..|. -.||.++..++...++. .|+++||||-+
T Consensus 155 e----~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddP 230 (501)
T KOG0459|consen 155 E----NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDP 230 (501)
T ss_pred c----ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCC
Confidence 5 788999999999999999999999999999999997663 35999999999888876 89999999988
Q ss_pred CCCc-----hHHHHHHHH---HhCCC---cccccccccccccchhHHHH-------------HHHHhCCCCCCCCCCCce
Q 043429 217 GAEP-----SRVAREIEE---VIGLD---CTNAILCSAKEGIGINEILN-------------AIVKRIPPPSNTAGCPFR 272 (646)
Q Consensus 217 ~~~~-----~~~~~el~~---~l~~~---~~~i~~vSAk~g~GV~eLl~-------------~I~~~ip~P~~~~~~pl~ 272 (646)
..++ ++..+.+.. .+|++ ...++++|..+|.++.+..+ .+. .+|.+.+..++|++
T Consensus 231 tvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~ld-~l~~~~R~~~GP~~ 309 (501)
T KOG0459|consen 231 TVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEYLD-ELPHLERILNGPIR 309 (501)
T ss_pred ccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcccccCCcccCCccceehh-ccCcccccCCCCEE
Confidence 6654 222233222 33433 33589999999999987543 322 36666788899999
Q ss_pred EEEEEEEeecc---------------ceEEecCCCceEEc--------------cce-eeEEEeecccccccccCCeeee
Q 043429 273 ALIFDRIIMLM---------------KLECYPPIKCKWKN--------------FKQ-VGYLSASIRSVADARVGDTITH 322 (646)
Q Consensus 273 ~~vf~~~~d~~---------------~~i~~~~~~~~~~v--------------aG~-Vg~i~~~i~~~~~~~~GDtl~~ 322 (646)
+.|.+-+.|-. +.+.+|+.+...+| +|| +-.-+.|+ ...++..|-.|++
T Consensus 310 ~pI~~KykdmGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~ddvE~~~~~pGenvk~rlkgi-eeedi~~GfiL~~ 388 (501)
T KOG0459|consen 310 CPVANKYKDMGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYSDDVETDRVAPGENVKLRLKGI-EEEDISPGFILCS 388 (501)
T ss_pred eehhhhccccceEEEEEecccceecCCeEEEccCCcceEEEEEecccceeeeccCCcceEEEeccc-chhhccCceEEec
Confidence 99988766654 78889999888777 777 33444555 4578899999998
Q ss_pred cCcccc
Q 043429 323 FNRKAD 328 (646)
Q Consensus 323 ~~~~~~ 328 (646)
.++++.
T Consensus 389 ~~n~~~ 394 (501)
T KOG0459|consen 389 PNNPCK 394 (501)
T ss_pred CCCccc
Confidence 887763
No 231
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.74 E-value=5e-17 Score=189.66 Aligned_cols=160 Identities=21% Similarity=0.287 Sum_probs=119.4
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCC
Q 043429 80 VPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTP 159 (646)
Q Consensus 80 ~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTP 159 (646)
+.+...++|+|+|++|+|||||+++|++.... .++...|+|.+.......|. +..+++||||
T Consensus 270 ~~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~--------------iv~~~pGvT~d~~~~~~~~~----~~~~~liDT~ 331 (712)
T PRK09518 270 AGPKAVGVVAIVGRPNVGKSTLVNRILGRREA--------------VVEDTPGVTRDRVSYDAEWA----GTDFKLVDTG 331 (712)
T ss_pred cccccCcEEEEECCCCCCHHHHHHHHhCCCce--------------eecCCCCeeEEEEEEEEEEC----CEEEEEEeCC
Confidence 34445689999999999999999999863211 12345677877655555554 6789999999
Q ss_pred CCcc--------chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHh
Q 043429 160 GHVD--------FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVI 231 (646)
Q Consensus 160 G~~d--------f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l 231 (646)
|+.. +...+..++..||++|+|+|++++....+...+......++|+++|+||+|+..... ...+.. .+
T Consensus 332 G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~--~~~~~~-~l 408 (712)
T PRK09518 332 GWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEY--DAAEFW-KL 408 (712)
T ss_pred CcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchh--hHHHHH-Hc
Confidence 9864 334456678999999999999998877776555666678999999999999864321 112221 23
Q ss_pred CCCcccccccccccccchhHHHHHHHHhCCC
Q 043429 232 GLDCTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 232 ~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
++. ..+++||++|.||++|+++|++.++.
T Consensus 409 g~~--~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 409 GLG--EPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCC--CeEEEECCCCCCchHHHHHHHHhccc
Confidence 443 46899999999999999999998865
No 232
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.74 E-value=3.6e-17 Score=193.06 Aligned_cols=194 Identities=26% Similarity=0.275 Sum_probs=140.9
Q ss_pred HHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCC--------------CeEEEEEeCCCCcc
Q 043429 98 KSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENE--------------PFCLNLIDTPGHVD 163 (646)
Q Consensus 98 KSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~--------------~~~l~liDTPG~~d 163 (646)
||||+++|... . .......|||.....+.+.+....+ .-.++|||||||.+
T Consensus 474 KTtLLD~iR~t-~--------------v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~ 538 (1049)
T PRK14845 474 NTTLLDKIRKT-R--------------VAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEA 538 (1049)
T ss_pred cccHHHHHhCC-C--------------cccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHH
Confidence 99999999662 1 1234568999998888777652111 11389999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCC-CCCc--------------hHHHHHHH
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP-GAEP--------------SRVAREIE 228 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~-~~~~--------------~~~~~el~ 228 (646)
|.....++++.+|++++|+|+++|.+.++...+..+...++|+++|+||+|+. +++. +.+.+++.
T Consensus 539 F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~ 618 (1049)
T PRK14845 539 FTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELE 618 (1049)
T ss_pred HHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHH
Confidence 99888888899999999999999999999999988888899999999999985 3321 22233332
Q ss_pred H----------HhCCC------------cccccccccccccchhHHHHHHHHhCC-----CCCCCCCCCceEEEEEEEee
Q 043429 229 E----------VIGLD------------CTNAILCSAKEGIGINEILNAIVKRIP-----PPSNTAGCPFRALIFDRIIM 281 (646)
Q Consensus 229 ~----------~l~~~------------~~~i~~vSAk~g~GV~eLl~~I~~~ip-----~P~~~~~~pl~~~vf~~~~d 281 (646)
+ ..|+. ..+++++||++|+|+++|+++|....+ ....+++.|+++.|.+++.+
T Consensus 619 ~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~ 698 (1049)
T PRK14845 619 IKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEE 698 (1049)
T ss_pred HHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhhhhhccCCCCceEEEEEEEEEe
Confidence 1 12322 237899999999999999998865432 23445678999999988766
Q ss_pred ccceEEecCCCceEEccceeeEEEeecccccccccCCeeeec
Q 043429 282 LMKLECYPPIKCKWKNFKQVGYLSASIRSVADARVGDTITHF 323 (646)
Q Consensus 282 ~~~~i~~~~~~~~~~vaG~Vg~i~~~i~~~~~~~~GDtl~~~ 323 (646)
+ | +|.+++++-.-+.++.||+|...
T Consensus 699 k----------------G-~G~vvt~iv~~G~Lk~GD~iv~g 723 (1049)
T PRK14845 699 K----------------G-LGTTIDAIIYDGTLRRGDTIVVG 723 (1049)
T ss_pred c----------------C-ceeEEEEEEEcCEEecCCEEEEc
Confidence 4 2 44444444444566667766543
No 233
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.74 E-value=2.9e-17 Score=174.34 Aligned_cols=165 Identities=21% Similarity=0.273 Sum_probs=114.7
Q ss_pred cccccCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEE
Q 043429 75 DRLLKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLN 154 (646)
Q Consensus 75 ~~~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~ 154 (646)
+..-.++.+.+..|+|+|.+|+|||||+++|...... +.....+|.......+.+. ....+.
T Consensus 147 ~~~~~lelk~~adV~lvG~pnaGKSTLl~~lt~~~~~---------------va~y~fTT~~p~ig~v~~~---~~~~~~ 208 (329)
T TIGR02729 147 ERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPK---------------IADYPFTTLVPNLGVVRVD---DGRSFV 208 (329)
T ss_pred EEEEEEEeeccccEEEEcCCCCCHHHHHHHHhcCCcc---------------ccCCCCCccCCEEEEEEeC---CceEEE
Confidence 3344455566789999999999999999999763211 1122344555555555443 237899
Q ss_pred EEeCCCCcc-------chhhHhhhhhhccceEEEEeCCCC---ccHhhHHHHHHHHH------cCCCeEEEEeccCCCCC
Q 043429 155 LIDTPGHVD-------FSYEVSRSLAACEGALLVVDASQG---VEAQTLANVYLALE------NNLEIIPVLNKIDLPGA 218 (646)
Q Consensus 155 liDTPG~~d-------f~~~~~~~l~~ad~~IlVvDa~~g---~~~qt~~~~~~~~~------~~~piIvViNKiDl~~~ 218 (646)
+|||||+.+ +...+.+.+..||++++|+|+++. ...+....|...+. .+.|+++|+||+|+...
T Consensus 209 i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 209 IADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred EEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence 999999864 223445666779999999999975 44555555554432 36899999999998754
Q ss_pred C-chHHHHHHHHHhCCCcccccccccccccchhHHHHHHHHhC
Q 043429 219 E-PSRVAREIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 219 ~-~~~~~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
. .++..+++.+.++ .+++++||+++.|+++++++|.+.+
T Consensus 289 ~~~~~~~~~l~~~~~---~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 289 EELAELLKELKKALG---KPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred HHHHHHHHHHHHHcC---CcEEEEEccCCcCHHHHHHHHHHHh
Confidence 3 2233344444444 3589999999999999999998765
No 234
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.73 E-value=1.4e-17 Score=155.07 Aligned_cols=135 Identities=21% Similarity=0.205 Sum_probs=92.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc----
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV---- 162 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~---- 162 (646)
||+++|++|+|||||+++|..... ....|+. ..+. -.+|||||+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~-------------------~~~~t~~-----~~~~-------~~~iDt~G~~~~~~ 50 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI-------------------LYKKTQA-----VEYN-------DGAIDTPGEYVENR 50 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc-------------------cccccee-----EEEc-------CeeecCchhhhhhH
Confidence 799999999999999999975210 0011221 2222 1689999983
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC-chHHHHHHHHHhCCCccccccc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE-PSRVAREIEEVIGLDCTNAILC 241 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~-~~~~~~el~~~l~~~~~~i~~v 241 (646)
.+.......++.+|++++|+|++++.+.++. .|... .+.|+++|+||+|+.... ..+..+++.+..+. .+++++
T Consensus 51 ~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~-~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~ 125 (142)
T TIGR02528 51 RLYSALIVTAADADVIALVQSATDPESRFPP-GFASI--FVKPVIGLVTKIDLAEADVDIERAKELLETAGA--EPIFEI 125 (142)
T ss_pred HHHHHHHHHhhcCCEEEEEecCCCCCcCCCh-hHHHh--ccCCeEEEEEeeccCCcccCHHHHHHHHHHcCC--CcEEEE
Confidence 2222223457899999999999999887764 33332 245999999999986532 22223343333443 368999
Q ss_pred ccccccchhHHHHHHH
Q 043429 242 SAKEGIGINEILNAIV 257 (646)
Q Consensus 242 SAk~g~GV~eLl~~I~ 257 (646)
||++|.|++++++++.
T Consensus 126 Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 126 SSVDEQGLEALVDYLN 141 (142)
T ss_pred ecCCCCCHHHHHHHHh
Confidence 9999999999999874
No 235
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.72 E-value=9.8e-17 Score=149.41 Aligned_cols=153 Identities=25% Similarity=0.255 Sum_probs=104.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.||+++|++|+|||||+++|+... ...+..+++|.......+. .++..+.+.+|||||+.++.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~---------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~G~~~~~ 64 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK---------------FITEYKPGTTRNYVTTVIE--EDGKTYKFNLLDTAGQEDYR 64 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC---------------CcCcCCCCceeeeeEEEEE--ECCEEEEEEEEECCCcccch
Confidence 589999999999999999998732 1122334444444333233 33334889999999999998
Q ss_pred hhHhhhhhhccceEEEEeCCCC-ccHhhHH-HHHH----HHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCccccc
Q 043429 166 YEVSRSLAACEGALLVVDASQG-VEAQTLA-NVYL----ALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAI 239 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g-~~~qt~~-~~~~----~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~ 239 (646)
..+....+.+++++.++|.... ..+.... .|.. ....+.|+++|+||+|+...+...........++. .+++
T Consensus 65 ~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~ 142 (161)
T TIGR00231 65 AIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNG--EPII 142 (161)
T ss_pred HHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccC--CceE
Confidence 8888888888888888887765 3332222 2222 22238899999999999765433333333333332 3599
Q ss_pred ccccccccchhHHHHHHH
Q 043429 240 LCSAKEGIGINEILNAIV 257 (646)
Q Consensus 240 ~vSAk~g~GV~eLl~~I~ 257 (646)
++||++|.|+++++++|.
T Consensus 143 ~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 143 PLSAETGKNIDSAFKIVE 160 (161)
T ss_pred EeecCCCCCHHHHHHHhh
Confidence 999999999999999863
No 236
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.72 E-value=3e-17 Score=181.50 Aligned_cols=148 Identities=27% Similarity=0.269 Sum_probs=111.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|++|+|||||+|+|+.....+ +....|+|.+.....+.+. +..+++|||||+.++.
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~--------------v~~~~gtT~d~~~~~i~~~----g~~i~l~DT~G~~~~~ 277 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAI--------------VTDIAGTTRDVIEEHINLD----GIPLRLIDTAGIRETD 277 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcc--------------cCCCCCcccccEEEEEEEC----CeEEEEEeCCCCCCCc
Confidence 589999999999999999998632111 2334566766655555553 6789999999998765
Q ss_pred hh--------HhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCccc
Q 043429 166 YE--------VSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTN 237 (646)
Q Consensus 166 ~~--------~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~ 237 (646)
.. ...++..+|++++|+|++++.+.+....|.. ..+.|+++|+||+|+....... .....+
T Consensus 278 ~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~---------~~~~~~ 346 (449)
T PRK05291 278 DEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDLE---------EENGKP 346 (449)
T ss_pred cHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchhh---------hccCCc
Confidence 43 2346788999999999999887776665554 5689999999999996543211 112346
Q ss_pred ccccccccccchhHHHHHHHHhCCC
Q 043429 238 AILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
++++||++|.|+++|+++|.+.++.
T Consensus 347 ~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 347 VIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred eEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 8999999999999999999988753
No 237
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.72 E-value=7.7e-17 Score=157.75 Aligned_cols=155 Identities=19% Similarity=0.227 Sum_probs=109.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+++|+|+.|+|||||+++|.... .. + +...|+..... ..+..++....+++|||||+.++.
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~--~~---------~------~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~ 63 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGE--FP---------E------EYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYE 63 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CC---------c------ccCCcccceEE-EEEEECCEEEEEEEEECCCChhcc
Confidence 489999999999999999997521 11 0 01112211111 122333445778999999998887
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHH-HHHHHHH---cCCCeEEEEeccCCCCCCc------------hHHHHHHHH
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLALE---NNLEIIPVLNKIDLPGAEP------------SRVAREIEE 229 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~-~~~~~~~---~~~piIvViNKiDl~~~~~------------~~~~~el~~ 229 (646)
.....+++.+|++++++|.++..+++... .|...+. .++|+++|+||+|+..... .+...++.+
T Consensus 64 ~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (187)
T cd04129 64 RLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAK 143 (187)
T ss_pred ccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHH
Confidence 66666788999999999999888887775 4665544 2689999999999854211 122334445
Q ss_pred HhCCCcccccccccccccchhHHHHHHHHhC
Q 043429 230 VIGLDCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 230 ~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
.++. .+++++||++|.||+++|+++.+.+
T Consensus 144 ~~~~--~~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 144 EIGA--KKYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred HhCC--cEEEEccCCCCCCHHHHHHHHHHHH
Confidence 5543 2589999999999999999998765
No 238
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=5.6e-17 Score=145.10 Aligned_cols=161 Identities=25% Similarity=0.288 Sum_probs=125.9
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCC
Q 043429 80 VPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTP 159 (646)
Q Consensus 80 ~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTP 159 (646)
+.-..|.+-.|||+-|+|||+|+.++.+. .++..-+ .|+...+.+-.....+...++++|||+
T Consensus 6 ynysyifkyiiigdmgvgkscllhqftek-----------kfmadcp------htigvefgtriievsgqkiklqiwdta 68 (215)
T KOG0097|consen 6 YNYSYIFKYIIIGDMGVGKSCLLHQFTEK-----------KFMADCP------HTIGVEFGTRIIEVSGQKIKLQIWDTA 68 (215)
T ss_pred cchhheEEEEEEccccccHHHHHHHHHHH-----------HHhhcCC------cccceecceeEEEecCcEEEEEEeecc
Confidence 34467889999999999999999999773 2222222 266666666666677889999999999
Q ss_pred CCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc----CCCeEEEEeccCCCCCC--chHHHHHHHHHhCC
Q 043429 160 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPGAE--PSRVAREIEEVIGL 233 (646)
Q Consensus 160 G~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~----~~piIvViNKiDl~~~~--~~~~~~el~~~l~~ 233 (646)
|+++|...+..+++.+.++++|+|.+.......+..|....+. +..+++++||.|+...+ .-+..+++.+.-|+
T Consensus 69 gqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl 148 (215)
T KOG0097|consen 69 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGL 148 (215)
T ss_pred cHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCe
Confidence 9999999999999999999999999999888888888765543 44489999999997543 33445566666666
Q ss_pred CcccccccccccccchhHHHHHHHHhC
Q 043429 234 DCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 234 ~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
- ++++||++|+||++.|-...+.+
T Consensus 149 ~---fle~saktg~nvedafle~akki 172 (215)
T KOG0097|consen 149 M---FLEASAKTGQNVEDAFLETAKKI 172 (215)
T ss_pred E---EEEecccccCcHHHHHHHHHHHH
Confidence 4 89999999999998765555444
No 239
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.71 E-value=6.6e-17 Score=155.27 Aligned_cols=151 Identities=23% Similarity=0.259 Sum_probs=100.4
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc-----
Q 043429 90 IIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF----- 164 (646)
Q Consensus 90 IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df----- 164 (646)
|+|++|+|||||+++|.+... ......+.|+......+.+. .+..+++|||||+.+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~---------------~~~~~~~~t~~~~~~~~~~~---~~~~~~i~DtpG~~~~~~~~~ 62 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP---------------KVANYPFTTLEPNLGVVEVP---DGARIQVADIPGLIEGASEGR 62 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc---------------cccCCCceeecCcceEEEcC---CCCeEEEEeccccchhhhcCC
Confidence 589999999999999987321 11223445555544333222 1578899999998532
Q ss_pred --hhhHhhhhhhccceEEEEeCCCC------ccHhhHHHHHHHHH-----------cCCCeEEEEeccCCCCCCchHHHH
Q 043429 165 --SYEVSRSLAACEGALLVVDASQG------VEAQTLANVYLALE-----------NNLEIIPVLNKIDLPGAEPSRVAR 225 (646)
Q Consensus 165 --~~~~~~~l~~ad~~IlVvDa~~g------~~~qt~~~~~~~~~-----------~~~piIvViNKiDl~~~~~~~~~~ 225 (646)
......+++.+|++++|+|+++. ........|..... .+.|+++|+||+|+..........
T Consensus 63 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~ 142 (176)
T cd01881 63 GLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL 142 (176)
T ss_pred CccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH
Confidence 12334567889999999999987 34444444433332 378999999999987543322111
Q ss_pred HHHHHhCCCcccccccccccccchhHHHHHHHHh
Q 043429 226 EIEEVIGLDCTNAILCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 226 el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ 259 (646)
..........+++++||++|.|++++++++...
T Consensus 143 -~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 143 -VRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred -HHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 112222234469999999999999999998764
No 240
>PRK00089 era GTPase Era; Reviewed
Probab=99.71 E-value=8.8e-17 Score=168.60 Aligned_cols=157 Identities=24% Similarity=0.263 Sum_probs=107.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
..|+++|++|+|||||+|+|++....+ .....++|....... + ...+..+.+|||||+.+..
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~--------------vs~~~~tt~~~i~~i--~--~~~~~qi~~iDTPG~~~~~ 67 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISI--------------VSPKPQTTRHRIRGI--V--TEDDAQIIFVDTPGIHKPK 67 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceee--------------cCCCCCcccccEEEE--E--EcCCceEEEEECCCCCCch
Confidence 479999999999999999998632211 111122222211111 1 1135789999999986533
Q ss_pred --------hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCC--CchHHHHHHHHHhCCCc
Q 043429 166 --------YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGA--EPSRVAREIEEVIGLDC 235 (646)
Q Consensus 166 --------~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~--~~~~~~~el~~~l~~~~ 235 (646)
..+..++..+|++++|+|++++.+......+......+.|+++|+||+|+... ......+++.+.++ .
T Consensus 68 ~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~--~ 145 (292)
T PRK00089 68 RALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMD--F 145 (292)
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCC--C
Confidence 23445778899999999999866555444444444457899999999999632 22333444444333 3
Q ss_pred ccccccccccccchhHHHHHHHHhCCC
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
.+++++||++|.|+++++++|.+.+|+
T Consensus 146 ~~i~~iSA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 146 AEIVPISALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhCCC
Confidence 569999999999999999999999864
No 241
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.71 E-value=9.6e-17 Score=171.88 Aligned_cols=150 Identities=28% Similarity=0.365 Sum_probs=104.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
...+|+|+|.+|+|||||+|+|++.. . .+....+.|.+.....+.+. .+..+.||||||+.+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~--------------~v~~~~~tT~d~~~~~i~~~---~~~~i~l~DT~G~~~ 249 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-V--------------YAADQLFATLDPTTRRLDLP---DGGEVLLTDTVGFIR 249 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-e--------------eeccCCccccCCEEEEEEeC---CCceEEEEecCcccc
Confidence 45789999999999999999997631 1 11223455666655555442 256899999999832
Q ss_pred ---------chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCCchHHHHHHHHH
Q 043429 164 ---------FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAEPSRVAREIEEV 230 (646)
Q Consensus 164 ---------f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~~~~~~~el~~~ 230 (646)
|.. +...+..||++++|+|++++...+....|...+. .+.|+++|+||+|+.... .. ..+..
T Consensus 250 ~l~~~lie~f~~-tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~--~v-~~~~~- 324 (351)
T TIGR03156 250 DLPHELVAAFRA-TLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP--RI-ERLEE- 324 (351)
T ss_pred cCCHHHHHHHHH-HHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH--hH-HHHHh-
Confidence 211 2235778999999999998877665554443332 378999999999986421 11 11111
Q ss_pred hCCCcccccccccccccchhHHHHHHHHh
Q 043429 231 IGLDCTNAILCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 231 l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ 259 (646)
+ ..+++++||++|.|+++|+++|.+.
T Consensus 325 -~--~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 325 -G--YPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred -C--CCCEEEEEccCCCCHHHHHHHHHhh
Confidence 1 1258999999999999999999764
No 242
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=1.7e-16 Score=172.95 Aligned_cols=160 Identities=20% Similarity=0.252 Sum_probs=113.2
Q ss_pred cCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeC
Q 043429 79 KVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDT 158 (646)
Q Consensus 79 ~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDT 158 (646)
.++.+-+..|+++|.+|+|||||+++|+..... +....++|...+...+.+. .+..+.+|||
T Consensus 152 ~lelk~~adVglVG~pNaGKSTLLn~Lt~ak~k---------------Ia~ypfTTl~PnlG~v~~~---~~~~~~laD~ 213 (424)
T PRK12297 152 RLELKLLADVGLVGFPNVGKSTLLSVVSNAKPK---------------IANYHFTTLVPNLGVVETD---DGRSFVMADI 213 (424)
T ss_pred EEeecccCcEEEEcCCCCCHHHHHHHHHcCCCc---------------cccCCcceeceEEEEEEEe---CCceEEEEEC
Confidence 344455679999999999999999999763211 1223455666665555443 2568999999
Q ss_pred CCCccc-------hhhHhhhhhhccceEEEEeCCCC---ccHhhHHHHHHHHH------cCCCeEEEEeccCCCCCCchH
Q 043429 159 PGHVDF-------SYEVSRSLAACEGALLVVDASQG---VEAQTLANVYLALE------NNLEIIPVLNKIDLPGAEPSR 222 (646)
Q Consensus 159 PG~~df-------~~~~~~~l~~ad~~IlVvDa~~g---~~~qt~~~~~~~~~------~~~piIvViNKiDl~~~~~~~ 222 (646)
||.... .....+.+..|+++++|+|+++. ...+....|...+. .++|+++|+||+|+... .+
T Consensus 214 PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e 291 (424)
T PRK12297 214 PGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EE 291 (424)
T ss_pred CCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HH
Confidence 998542 23344556679999999999854 34445555544443 37899999999998533 33
Q ss_pred HHHHHHHHhCCCcccccccccccccchhHHHHHHHHhCC
Q 043429 223 VAREIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 223 ~~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
..+++.+.++ .+++++||+++.|+++|+++|.+.+.
T Consensus 292 ~l~~l~~~l~---~~i~~iSA~tgeGI~eL~~~L~~~l~ 327 (424)
T PRK12297 292 NLEEFKEKLG---PKVFPISALTGQGLDELLYAVAELLE 327 (424)
T ss_pred HHHHHHHHhC---CcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3455666555 36899999999999999999988764
No 243
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.70 E-value=2.1e-16 Score=149.19 Aligned_cols=155 Identities=24% Similarity=0.255 Sum_probs=103.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|.+|+|||||+++|+....... ......+....... ....+..+.+|||||+.+..
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~--------------~~~~~~~~~~~~~~----~~~~~~~~~liDtpG~~~~~ 65 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIV--------------SPKPQTTRNRIRGI----YTDDDAQIIFVDTPGIHKPK 65 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEec--------------cCCCCceeceEEEE----EEcCCeEEEEEECCCCCcch
Confidence 5899999999999999999976321110 11111122211111 12236789999999987543
Q ss_pred h--------hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCc
Q 043429 166 Y--------EVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDC 235 (646)
Q Consensus 166 ~--------~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~ 235 (646)
. .....+..+|++++|+|+++.........+......+.|+++|+||+|+.... ..+..+.+....+ .
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~ 143 (168)
T cd04163 66 KKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGP--F 143 (168)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhccC--C
Confidence 2 33456888999999999998744444444444445679999999999986421 2233333433322 3
Q ss_pred ccccccccccccchhHHHHHHHHhC
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
.+++++|++++.|+++++++|.+.+
T Consensus 144 ~~~~~~s~~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 144 AEIFPISALKGENVDELLEEIVKYL 168 (168)
T ss_pred CceEEEEeccCCChHHHHHHHHhhC
Confidence 4789999999999999999997653
No 244
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.70 E-value=1.1e-16 Score=147.28 Aligned_cols=151 Identities=22% Similarity=0.230 Sum_probs=109.0
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchhhHh
Q 043429 90 IIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYEVS 169 (646)
Q Consensus 90 IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~~~~ 169 (646)
|+|++|+|||||+++|+..... ......|. ................+++|||||+.++.....
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~----------------~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 63 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV----------------PEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRR 63 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC----------------Ccccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHH
Confidence 5899999999999999873221 11122233 333444444444468899999999999888888
Q ss_pred hhhhhccceEEEEeCCCCccHhhHHHH-----HHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcccccccccc
Q 043429 170 RSLAACEGALLVVDASQGVEAQTLANV-----YLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAK 244 (646)
Q Consensus 170 ~~l~~ad~~IlVvDa~~g~~~qt~~~~-----~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~~vSAk 244 (646)
..++.+|++++|+|++++........| ......+.|+++|+||+|+.....................+++++|++
T Consensus 64 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 143 (157)
T cd00882 64 LYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAK 143 (157)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecC
Confidence 889999999999999998888777665 223345899999999999876544332211112222334579999999
Q ss_pred cccchhHHHHHHH
Q 043429 245 EGIGINEILNAIV 257 (646)
Q Consensus 245 ~g~GV~eLl~~I~ 257 (646)
++.|+++++++|.
T Consensus 144 ~~~~i~~~~~~l~ 156 (157)
T cd00882 144 TGENVEELFEELA 156 (157)
T ss_pred CCCChHHHHHHHh
Confidence 9999999999985
No 245
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.69 E-value=1.9e-16 Score=174.26 Aligned_cols=149 Identities=23% Similarity=0.272 Sum_probs=109.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
-.+|+++|++|+|||||+|+|++....+ +....|+|.+.....+.+. ++.+++|||||+.++
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~ai--------------vs~~pgtTrd~~~~~i~~~----g~~v~l~DTaG~~~~ 264 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAI--------------VSDIKGTTRDVVEGDFELN----GILIKLLDTAGIREH 264 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcc--------------cCCCCCcEEEEEEEEEEEC----CEEEEEeeCCCcccc
Confidence 3589999999999999999998742221 2234677777665555554 688999999999765
Q ss_pred hhhH--------hhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcc
Q 043429 165 SYEV--------SRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCT 236 (646)
Q Consensus 165 ~~~~--------~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~ 236 (646)
...+ ..+++.+|++++|+|++++.+.+.. .+......+.|+++|+||+|+...+. +++.+.++.
T Consensus 265 ~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~~~----~~~~~~~~~--- 336 (442)
T TIGR00450 265 ADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKINSL----EFFVSSKVL--- 336 (442)
T ss_pred hhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCcch----hhhhhhcCC---
Confidence 5322 3578889999999999998877665 33334446899999999999965421 233333443
Q ss_pred cccccccccccchhHHHHHHHHhC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++.+||++ .||+++++.+.+.+
T Consensus 337 ~~~~vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 337 NSSNLSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred ceEEEEEec-CCHHHHHHHHHHHH
Confidence 478999998 58888888887765
No 246
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.69 E-value=1e-17 Score=148.47 Aligned_cols=152 Identities=18% Similarity=0.219 Sum_probs=122.3
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchhhHh
Q 043429 90 IIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYEVS 169 (646)
Q Consensus 90 IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~~~~ 169 (646)
++|++++|||+|+-|+-. |+. +...- -.|+..++...-...++..+++++|||+|+++|.+.+.
T Consensus 2 llgds~~gktcllir~kd--gaf---------l~~~f-----istvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ 65 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKD--GAF---------LAGNF-----ISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTH 65 (192)
T ss_pred ccccCccCceEEEEEecc--Cce---------ecCce-----eeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhH
Confidence 689999999999876633 211 11111 12555555555556677889999999999999999999
Q ss_pred hhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCC--CCchHHHHHHHHHhCCCccccccccc
Q 043429 170 RSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPG--AEPSRVAREIEEVIGLDCTNAILCSA 243 (646)
Q Consensus 170 ~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~--~~~~~~~~el~~~l~~~~~~i~~vSA 243 (646)
.|++.+|+.+|++|..+..++...+.|...+. ..+.+.+++||||+.. +...+..+.+.+.++++ ++++||
T Consensus 66 ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ip---fmetsa 142 (192)
T KOG0083|consen 66 AYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIP---FMETSA 142 (192)
T ss_pred hhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCC---ceeccc
Confidence 99999999999999999999999999987765 4677999999999964 33455667888889886 899999
Q ss_pred ccccchhHHHHHHHHhC
Q 043429 244 KEGIGINEILNAIVKRI 260 (646)
Q Consensus 244 k~g~GV~eLl~~I~~~i 260 (646)
|+|.||+-.|-.|.+.+
T Consensus 143 ktg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 143 KTGFNVDLAFLAIAEEL 159 (192)
T ss_pred cccccHhHHHHHHHHHH
Confidence 99999999999888765
No 247
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.68 E-value=9.7e-17 Score=147.21 Aligned_cols=155 Identities=19% Similarity=0.182 Sum_probs=119.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEE-ecCCCeEEEEEeCCCCccc
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYV-FENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~-~~~~~~~l~liDTPG~~df 164 (646)
.++.+||++-+|||+|+..+.+.. ... -+..|+..++..--.. .++..++++||||+|+++|
T Consensus 9 frlivigdstvgkssll~~ft~gk--fae---------------lsdptvgvdffarlie~~pg~riklqlwdtagqerf 71 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGK--FAE---------------LSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERF 71 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCc--ccc---------------cCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHH
Confidence 578999999999999999986621 110 1122443332211111 2345788999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCC--C----eEEEEeccCCCCCCc--hHHHHHHHHHhCCCcc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNL--E----IIPVLNKIDLPGAEP--SRVAREIEEVIGLDCT 236 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~--p----iIvViNKiDl~~~~~--~~~~~el~~~l~~~~~ 236 (646)
...+..|++++-|+++|+|.++..+++.+.+|.....+++ | +.+|+.|+||...+. .+..+.+....|+.
T Consensus 72 rsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~-- 149 (213)
T KOG0091|consen 72 RSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMA-- 149 (213)
T ss_pred HHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCce--
Confidence 9999999999999999999999999999999987766432 2 788999999976542 34456677777775
Q ss_pred cccccccccccchhHHHHHHHHhC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
++++||++|.||++.|+.|.+.+
T Consensus 150 -FVETSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 150 -FVETSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred -EEEecccCCCcHHHHHHHHHHHH
Confidence 89999999999999999987755
No 248
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.68 E-value=4.6e-16 Score=144.93 Aligned_cols=153 Identities=26% Similarity=0.239 Sum_probs=107.7
Q ss_pred EEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh---
Q 043429 90 IIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY--- 166 (646)
Q Consensus 90 IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~--- 166 (646)
|+|++|+|||||+++|+...... ....++.|.........+. ....+.+|||||+.++..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dt~g~~~~~~~~~ 63 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI--------------VSPVPGTTTDPVEYVWELG---PLGPVVLIDTPGIDEAGGLGR 63 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc--------------cCCCCCcEECCeEEEEEec---CCCcEEEEECCCCCccccchh
Confidence 58999999999999997632110 2223344544433333221 257899999999987653
Q ss_pred ----hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHH--HHHHHhCCCcccccc
Q 043429 167 ----EVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAR--EIEEVIGLDCTNAIL 240 (646)
Q Consensus 167 ----~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~--el~~~l~~~~~~i~~ 240 (646)
.....++.+|++++|+|++..........+......+.|+++|+||+|+...+...... ...........++++
T Consensus 64 ~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (163)
T cd00880 64 EREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIA 143 (163)
T ss_pred hHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEE
Confidence 34457889999999999999888777764555566899999999999987654322211 111222334557999
Q ss_pred cccccccchhHHHHHHHHh
Q 043429 241 CSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 241 vSAk~g~GV~eLl~~I~~~ 259 (646)
+||+++.|++++++++.+.
T Consensus 144 ~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 144 VSALTGEGIDELREALIEA 162 (163)
T ss_pred EeeeccCCHHHHHHHHHhh
Confidence 9999999999999999865
No 249
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.68 E-value=3.1e-16 Score=172.85 Aligned_cols=166 Identities=19% Similarity=0.202 Sum_probs=111.7
Q ss_pred cccccCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEE
Q 043429 75 DRLLKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLN 154 (646)
Q Consensus 75 ~~~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~ 154 (646)
+..-.++.+.+..|+|+|.+|+|||||+++|...... +....++|+......+.+. +..+.
T Consensus 149 ~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpk---------------IadypfTTl~P~lGvv~~~----~~~f~ 209 (500)
T PRK12296 149 ERDLVLELKSVADVGLVGFPSAGKSSLISALSAAKPK---------------IADYPFTTLVPNLGVVQAG----DTRFT 209 (500)
T ss_pred eEEEEEEecccceEEEEEcCCCCHHHHHHHHhcCCcc---------------ccccCcccccceEEEEEEC----CeEEE
Confidence 3333445556789999999999999999999763111 2223566777766666554 67899
Q ss_pred EEeCCCCccc-------hhhHhhhhhhccceEEEEeCCCC----ccHhhHHHHHHHH---------------HcCCCeEE
Q 043429 155 LIDTPGHVDF-------SYEVSRSLAACEGALLVVDASQG----VEAQTLANVYLAL---------------ENNLEIIP 208 (646)
Q Consensus 155 liDTPG~~df-------~~~~~~~l~~ad~~IlVvDa~~g----~~~qt~~~~~~~~---------------~~~~piIv 208 (646)
||||||..+- .....+.+..||++|+|||++.. ...+....|...+ ..+.|+++
T Consensus 210 laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IV 289 (500)
T PRK12296 210 VADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLV 289 (500)
T ss_pred EEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEE
Confidence 9999997531 22345677889999999999752 2222333222111 24689999
Q ss_pred EEeccCCCCCCchHHHHHHHHHhCCCcccccccccccccchhHHHHHHHHhCC
Q 043429 209 VLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 209 ViNKiDl~~~~~~~~~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
|+||+|++++. +..+.+...+.-...+++++||+++.|+++|+++|.+.+.
T Consensus 290 VlNKiDL~da~--el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~ 340 (500)
T PRK12296 290 VLNKIDVPDAR--ELAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVE 340 (500)
T ss_pred EEECccchhhH--HHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 99999997543 1222222222111246999999999999999999987663
No 250
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.68 E-value=4e-16 Score=181.69 Aligned_cols=152 Identities=20% Similarity=0.248 Sum_probs=115.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|++|+|||||+|+|.+... .+....|+|++.....+.+. ++.+++|||||+.++.
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~---------------~vgn~pGvTve~k~g~~~~~----~~~i~lvDtPG~ysl~ 64 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ---------------RVGNWAGVTVERKEGQFSTT----DHQVTLVDLPGTYSLT 64 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC---------------ccCCCCCceEeeEEEEEEcC----ceEEEEEECCCccccc
Confidence 5899999999999999999965211 12345788887666555544 7899999999998875
Q ss_pred hh----------Hhhhh--hhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCC-CCchHHHHHHHHHhC
Q 043429 166 YE----------VSRSL--AACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPG-AEPSRVAREIEEVIG 232 (646)
Q Consensus 166 ~~----------~~~~l--~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~-~~~~~~~~el~~~l~ 232 (646)
.. ...++ ..+|++++|+|+++... ....+.+..+.++|+++|+||+|+.+ .......+++++.+|
T Consensus 65 ~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG 142 (772)
T PRK09554 65 TISSQTSLDEQIACHYILSGDADLLINVVDASNLER--NLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLG 142 (772)
T ss_pred cccccccHHHHHHHHHHhccCCCEEEEEecCCcchh--hHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhC
Confidence 32 11233 36899999999998644 33445566778999999999999864 344455677888887
Q ss_pred CCcccccccccccccchhHHHHHHHHhCC
Q 043429 233 LDCTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 233 ~~~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
. |++++||++|.|++++++.+.+..+
T Consensus 143 ~---pVvpiSA~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 143 C---PVIPLVSTRGRGIEALKLAIDRHQA 168 (772)
T ss_pred C---CEEEEEeecCCCHHHHHHHHHHhhh
Confidence 6 4899999999999999999987653
No 251
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.68 E-value=8.3e-16 Score=148.26 Aligned_cols=166 Identities=20% Similarity=0.277 Sum_probs=129.1
Q ss_pred ccccCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEE
Q 043429 76 RLLKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNL 155 (646)
Q Consensus 76 ~~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~l 155 (646)
.+.++|.+...-|+++|.+|+|||||+|+|++..+-. ..+..+|.|...+...+ .-.+.+
T Consensus 15 ~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LA-------------rtSktPGrTq~iNff~~-------~~~~~l 74 (200)
T COG0218 15 DIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLA-------------RTSKTPGRTQLINFFEV-------DDELRL 74 (200)
T ss_pred CHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCccee-------------ecCCCCCccceeEEEEe-------cCcEEE
Confidence 4677888888999999999999999999998843211 24567888888776543 223789
Q ss_pred EeCCCCc----------cchhhHhhhhhh---ccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCC-Cch
Q 043429 156 IDTPGHV----------DFSYEVSRSLAA---CEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGA-EPS 221 (646)
Q Consensus 156 iDTPG~~----------df~~~~~~~l~~---ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~-~~~ 221 (646)
+|.||+. .+...+..|+.. ..++++++|+..+....+.+.+..+...++|+++|+||+|.... ...
T Consensus 75 VDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~ 154 (200)
T COG0218 75 VDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERN 154 (200)
T ss_pred EeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHH
Confidence 9999975 233445556654 56789999999999999999999999999999999999997664 345
Q ss_pred HHHHHHHHHhCCCcc-c--ccccccccccchhHHHHHHHHhCC
Q 043429 222 RVAREIEEVIGLDCT-N--AILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 222 ~~~~el~~~l~~~~~-~--i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
.....+++.++.+.. . ++..|+.++.|++++.+.|.+.+.
T Consensus 155 k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 155 KQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred HHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 556677766654432 1 788999999999999999988764
No 252
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.68 E-value=3.8e-16 Score=169.19 Aligned_cols=165 Identities=21% Similarity=0.268 Sum_probs=114.8
Q ss_pred cCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeC
Q 043429 79 KVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDT 158 (646)
Q Consensus 79 ~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDT 158 (646)
.++.+.+..|+|+|.+|+|||||+|+|+.... .+...+++|.......+.+. ....+.|+||
T Consensus 153 ~lelk~iadValVG~PNaGKSTLln~Lt~~k~---------------~vs~~p~TT~~p~~Giv~~~---~~~~i~~vDt 214 (390)
T PRK12298 153 KLELKLLADVGLLGLPNAGKSTFIRAVSAAKP---------------KVADYPFTTLVPNLGVVRVD---DERSFVVADI 214 (390)
T ss_pred EEeeeccccEEEEcCCCCCHHHHHHHHhCCcc---------------cccCCCCCccCcEEEEEEeC---CCcEEEEEeC
Confidence 33445567899999999999999999976321 12334566777666655553 2346899999
Q ss_pred CCCcc-------chhhHhhhhhhccceEEEEeCC---CCccHhhHHHHHHHHH------cCCCeEEEEeccCCCCCC-ch
Q 043429 159 PGHVD-------FSYEVSRSLAACEGALLVVDAS---QGVEAQTLANVYLALE------NNLEIIPVLNKIDLPGAE-PS 221 (646)
Q Consensus 159 PG~~d-------f~~~~~~~l~~ad~~IlVvDa~---~g~~~qt~~~~~~~~~------~~~piIvViNKiDl~~~~-~~ 221 (646)
||..+ ....+.+++..||++++|+|++ .....+....|...+. .+.|+++|+||+|+.... ..
T Consensus 215 PGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~ 294 (390)
T PRK12298 215 PGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAE 294 (390)
T ss_pred CCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHH
Confidence 99864 2234456788899999999988 3334444455544443 268999999999986432 22
Q ss_pred HHHHHHHHHhCCCcccccccccccccchhHHHHHHHHhCCC
Q 043429 222 RVAREIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 222 ~~~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+..+++.+.++.. .+++++||+++.|+++|+++|.+.++.
T Consensus 295 ~~l~~l~~~~~~~-~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 295 ERAKAIVEALGWE-GPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred HHHHHHHHHhCCC-CCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 2333444443321 258999999999999999999998864
No 253
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.68 E-value=7.8e-16 Score=152.54 Aligned_cols=152 Identities=16% Similarity=0.215 Sum_probs=106.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEe-----cCCCeEEEEEeCCCC
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVF-----ENEPFCLNLIDTPGH 161 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~-----~~~~~~l~liDTPG~ 161 (646)
+|+++|..++|||||++++++.. +.+ +...|+........+.. ++..+.++||||+|+
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~-----------f~~------~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~ 64 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQ-----------VLG------RPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGS 64 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC-----------CCC------CCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCc
Confidence 79999999999999999998621 111 12234443322222222 235688999999999
Q ss_pred ccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----------------------cCCCeEEEEeccCCCCC
Q 043429 162 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----------------------NNLEIIPVLNKIDLPGA 218 (646)
Q Consensus 162 ~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----------------------~~~piIvViNKiDl~~~ 218 (646)
++|......+++.+|++|+|+|.++..+++.+..|...+. .++|+++|+||+|+...
T Consensus 65 e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 65 ESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred hhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 9999999999999999999999999999999998876553 25899999999998654
Q ss_pred Cc---h---HHHHHHHHHhCCCccccccccccccc----------chhHHHHHHHH
Q 043429 219 EP---S---RVAREIEEVIGLDCTNAILCSAKEGI----------GINEILNAIVK 258 (646)
Q Consensus 219 ~~---~---~~~~el~~~l~~~~~~i~~vSAk~g~----------GV~eLl~~I~~ 258 (646)
+. . .....+.+.++.+ .++.++.+.. .+...|+.+++
T Consensus 145 r~~~~~~~~~~~~~ia~~~~~~---~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (202)
T cd04102 145 KESSGNLVLTARGFVAEQGNAE---EINLNCTNGRLLAAGSSDAVKLSRFFDKVIE 197 (202)
T ss_pred cccchHHHhhHhhhHHHhcCCc---eEEEecCCcccccCCCccHHHHHHHHHHHHH
Confidence 21 1 1123455666665 4555555432 34455665554
No 254
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=3.4e-17 Score=149.41 Aligned_cols=156 Identities=21% Similarity=0.273 Sum_probs=119.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeee--EEEEEEEecC-------CCeEE
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQ--AARMRYVFEN-------EPFCL 153 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~--~~~~~~~~~~-------~~~~l 153 (646)
+...++..+|++|+||||++-+..... . ..++. .|+..+ ...+.|+..+ ..+.+
T Consensus 7 dylikfLaLGDSGVGKTs~Ly~YTD~~--F-----~~qFI----------sTVGIDFreKrvvY~s~gp~g~gr~~rihL 69 (219)
T KOG0081|consen 7 DYLIKFLALGDSGVGKTSFLYQYTDGK--F-----NTQFI----------STVGIDFREKRVVYNSSGPGGGGRGQRIHL 69 (219)
T ss_pred HHHHHHHhhccCCCCceEEEEEecCCc--c-----cceeE----------EEeecccccceEEEeccCCCCCCcceEEEE
Confidence 346788999999999999987664311 1 01111 133332 3334454432 45779
Q ss_pred EEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc-----CCCeEEEEeccCCCCCCc--hHHHHH
Q 043429 154 NLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPGAEP--SRVARE 226 (646)
Q Consensus 154 ~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~-----~~piIvViNKiDl~~~~~--~~~~~e 226 (646)
+||||+|+++|...+...++.|-|.+|++|.++..++-..++|...++. +-.+++++||+|+++.+. ++...+
T Consensus 70 QlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~ 149 (219)
T KOG0081|consen 70 QLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAA 149 (219)
T ss_pred eeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999888774 444999999999987543 455667
Q ss_pred HHHHhCCCcccccccccccccchhHHHHHHHH
Q 043429 227 IEEVIGLDCTNAILCSAKEGIGINEILNAIVK 258 (646)
Q Consensus 227 l~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~ 258 (646)
+.+.+|++ +|++||-+|.||++..+.+++
T Consensus 150 La~kyglP---YfETSA~tg~Nv~kave~Lld 178 (219)
T KOG0081|consen 150 LADKYGLP---YFETSACTGTNVEKAVELLLD 178 (219)
T ss_pred HHHHhCCC---eeeeccccCcCHHHHHHHHHH
Confidence 88888886 999999999999876555554
No 255
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.67 E-value=3.8e-16 Score=160.99 Aligned_cols=220 Identities=25% Similarity=0.289 Sum_probs=167.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCcccc-ccccccccccccccccceeeeeeEEEEEEEec----------------
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKR-EMKEQFLDNMDLERERGITIKLQAARMRYVFE---------------- 147 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~-~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~---------------- 147 (646)
..+++..||.|||||||+..|.. |..... +....++|....|-++|-|-+.+..-+.|..+
T Consensus 117 hv~Vg~aGhVdhGKSTlvG~Lvt--G~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 117 HVLVGVAGHVDHGKSTLVGVLVT--GRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred eEEEEEeccccCCcceEEEEEEe--cCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 46899999999999999988853 444332 23456788888999999998888777666421
Q ss_pred ---CCCeEEEEEeCCCCccchhhHhhhhh--hccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCC-CCch
Q 043429 148 ---NEPFCLNLIDTPGHVDFSYEVSRSLA--ACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPG-AEPS 221 (646)
Q Consensus 148 ---~~~~~l~liDTPG~~df~~~~~~~l~--~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~-~~~~ 221 (646)
..+..+.|+||-||+.|...+.+.+- ..|..+|++.|++|.+..|.+++-.++..++|+|+|++|+|+.. .+..
T Consensus 195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~ddr~~ 274 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPDDRFQ 274 (527)
T ss_pred hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcHHHHH
Confidence 12355889999999999888877664 47999999999999999999999999999999999999999865 3455
Q ss_pred HHHHHHHHHhCC----C---------------------cccccccccccccchhHHHHHHHHhCCCC-CCCCCCCceEEE
Q 043429 222 RVAREIEEVIGL----D---------------------CTNAILCSAKEGIGINEILNAIVKRIPPP-SNTAGCPFRALI 275 (646)
Q Consensus 222 ~~~~el~~~l~~----~---------------------~~~i~~vSAk~g~GV~eLl~~I~~~ip~P-~~~~~~pl~~~v 275 (646)
.+.+++...+.. + ..|+|.+|+.+|+|++-|. .+...+|.- .-+...||.+.|
T Consensus 275 ~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~-e~f~~Lp~rr~~~d~g~flmYI 353 (527)
T COG5258 275 GVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLD-EFFLLLPKRRRWDDEGPFLMYI 353 (527)
T ss_pred HHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHH-HHHHhCCcccccCCCCCeEEEE
Confidence 566666555421 1 1279999999999996554 455666665 335678888777
Q ss_pred EEEEeeccceEEecCCCceEEccceeeEEEeecccccccccCCeeeecC
Q 043429 276 FDRIIMLMKLECYPPIKCKWKNFKQVGYLSASIRSVADARVGDTITHFN 324 (646)
Q Consensus 276 f~~~~d~~~~i~~~~~~~~~~vaG~Vg~i~~~i~~~~~~~~GDtl~~~~ 324 (646)
- +.|.|.| ||.++.|.-..+.++.|||+....
T Consensus 354 d----------------~iYsVtG-VGtVvsGsV~~G~l~~gd~vllGP 385 (527)
T COG5258 354 D----------------KIYSVTG-VGTVVSGSVKSGILHVGDTVLLGP 385 (527)
T ss_pred E----------------eeEEEee-eEEEEeeeEEeeeeccCCEEEEcc
Confidence 3 2344556 888888766778899999998753
No 256
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=1.5e-15 Score=143.32 Aligned_cols=165 Identities=20% Similarity=0.280 Sum_probs=125.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+|+|+.|+||||++.++.+......... . .+......|.+|+..+..+..+. .++.+.|+|||||.+|.
T Consensus 11 ~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~-~----~~~s~k~kr~tTva~D~g~~~~~---~~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 11 TKIVVIGPVGAGKTTFVRALSDKPLVITEAD-A----SSVSGKGKRPTTVAMDFGSIELD---EDTGVHLFGTPGQERFK 82 (187)
T ss_pred eeEEEEcccccchhhHHHHhhccccceeecc-c----cccccccccceeEeecccceEEc---CcceEEEecCCCcHHHH
Confidence 5899999999999999999988543221100 0 00111114557777777776665 35899999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcC-CCeEEEEeccCCCCCCchHHHHHHHHHhCCCcccccccccc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENN-LEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAK 244 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~-~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~~vSAk 244 (646)
.+|.-..+.+.++|+++|.+.+..+.....+......+ +|+++++||.|+.++.+.+...++.+.-. -..+++.++|.
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~-~~~~vi~~~a~ 161 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLEL-LSVPVIEIDAT 161 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhcc-CCCceeeeecc
Confidence 99999999999999999999999885555555555556 99999999999999887654444433321 24579999999
Q ss_pred cccchhHHHHHHHHh
Q 043429 245 EGIGINEILNAIVKR 259 (646)
Q Consensus 245 ~g~GV~eLl~~I~~~ 259 (646)
+++|..+.++.+...
T Consensus 162 e~~~~~~~L~~ll~~ 176 (187)
T COG2229 162 EGEGARDQLDVLLLK 176 (187)
T ss_pred cchhHHHHHHHHHhh
Confidence 999999999998776
No 257
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.66 E-value=4.7e-16 Score=153.17 Aligned_cols=156 Identities=23% Similarity=0.308 Sum_probs=125.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+++++|.+|+|||+|+-+++. ..+.+.++. |+. .........+++.+.+.++||+|+.+|.
T Consensus 4 ~kvvvlG~~gVGKSal~~qf~~-----------~~f~~~y~p------tie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~ 65 (196)
T KOG0395|consen 4 YKVVVLGAGGVGKSALTIQFLT-----------GRFVEDYDP------TIE-DSYRKELTVDGEVCMLEILDTAGQEEFS 65 (196)
T ss_pred eEEEEECCCCCCcchheeeecc-----------cccccccCC------Ccc-ccceEEEEECCEEEEEEEEcCCCcccCh
Confidence 5899999999999999999977 233333333 444 3444555566778999999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCC--CchHHHHHHHHHhCCCcccc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGA--EPSRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~--~~~~~~~el~~~l~~~~~~i 238 (646)
.+...+++.+|+.++|++.++..+++....++..+. ..+|+++|+||+|+... ...+..+.+...+++. +
T Consensus 66 ~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~---f 142 (196)
T KOG0395|consen 66 AMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCA---F 142 (196)
T ss_pred HHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCc---E
Confidence 999999999999999999999999999988877663 36899999999999873 3344455666666654 8
Q ss_pred cccccccccchhHHHHHHHHhCCC
Q 043429 239 ILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+++||+.+.+|+++|..++..+..
T Consensus 143 ~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 143 IETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred EEeeccCCcCHHHHHHHHHHHHHh
Confidence 999999999999999999986644
No 258
>PRK11058 GTPase HflX; Provisional
Probab=99.66 E-value=8.2e-16 Score=168.44 Aligned_cols=155 Identities=21% Similarity=0.205 Sum_probs=104.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
+++|+|+|.+|+|||||+|+|++... .+....+.|.+.....+.+. ....+.+|||||+.+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~---------------~v~~~~~tTld~~~~~i~l~---~~~~~~l~DTaG~~r~ 258 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARV---------------YAADQLFATLDPTLRRIDVA---DVGETVLADTVGFIRH 258 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCce---------------eeccCCCCCcCCceEEEEeC---CCCeEEEEecCccccc
Confidence 46899999999999999999976211 12223455666655555443 1237789999998442
Q ss_pred --hhh------HhhhhhhccceEEEEeCCCCccHhhHHHHHHHH----HcCCCeEEEEeccCCCCCCchHHHHHHHHHhC
Q 043429 165 --SYE------VSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENNLEIIPVLNKIDLPGAEPSRVAREIEEVIG 232 (646)
Q Consensus 165 --~~~------~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~----~~~~piIvViNKiDl~~~~~~~~~~el~~~l~ 232 (646)
... +...++.+|++|+|+|++++........|...+ ..++|+++|+||+|+....... .. . ...+
T Consensus 259 lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~-~~-~-~~~~ 335 (426)
T PRK11058 259 LPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPR-ID-R-DEEN 335 (426)
T ss_pred CCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHH-HH-H-HhcC
Confidence 111 233467899999999999987666554333322 2379999999999986432111 11 1 1122
Q ss_pred CCcccccccccccccchhHHHHHHHHhCCC
Q 043429 233 LDCTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 233 ~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
.+ .++++||++|.|+++|+++|.+.++.
T Consensus 336 ~~--~~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 336 KP--IRVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred CC--ceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 22 25889999999999999999998754
No 259
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.66 E-value=8e-16 Score=164.63 Aligned_cols=152 Identities=26% Similarity=0.302 Sum_probs=119.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+++|+|.||+|||||+|+|++...++ +...+|+|.+.-...+... ++.+.++||+|..+-.
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AI--------------VTdI~GTTRDviee~i~i~----G~pv~l~DTAGiRet~ 279 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAI--------------VTDIAGTTRDVIEEDINLN----GIPVRLVDTAGIRETD 279 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceE--------------ecCCCCCccceEEEEEEEC----CEEEEEEecCCcccCc
Confidence 589999999999999999999865444 4557889998877776666 8999999999998755
Q ss_pred hhHh--------hhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCccc
Q 043429 166 YEVS--------RSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTN 237 (646)
Q Consensus 166 ~~~~--------~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~ 237 (646)
..+. ..+..||.+++|+|++++.+.+....+. ....+.|+++|.||+|+........ + + . .+..+
T Consensus 280 d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~---~-~-~-~~~~~ 352 (454)
T COG0486 280 DVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELES---E-K-L-ANGDA 352 (454)
T ss_pred cHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccccch---h-h-c-cCCCc
Confidence 5443 3678899999999999986666655544 5667899999999999977654221 1 1 1 12235
Q ss_pred ccccccccccchhHHHHHHHHhCCC
Q 043429 238 AILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
++.+||++|+|++.|.+.|.+.+..
T Consensus 353 ~i~iSa~t~~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 353 IISISAKTGEGLDALREAIKQLFGK 377 (454)
T ss_pred eEEEEecCccCHHHHHHHHHHHHhh
Confidence 8999999999999999999887654
No 260
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.64 E-value=2.8e-15 Score=138.16 Aligned_cols=154 Identities=23% Similarity=0.311 Sum_probs=117.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|.|+|..|+||||++++|+.... | .. ..|...+..++.++ .+.+++||..|+..+.
T Consensus 17 ~riLiLGLdNsGKTti~~kl~~~~~------------~--~i----~pt~gf~Iktl~~~----~~~L~iwDvGGq~~lr 74 (185)
T KOG0073|consen 17 VRILILGLDNSGKTTIVKKLLGEDT------------D--TI----SPTLGFQIKTLEYK----GYTLNIWDVGGQKTLR 74 (185)
T ss_pred eEEEEEecCCCCchhHHHHhcCCCc------------c--cc----CCccceeeEEEEec----ceEEEEEEcCCcchhH
Confidence 5899999999999999999976321 1 11 12666666777777 8999999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHH-HHHHHH----HcCCCeEEEEeccCCCCCCchHHHH---HHHHHhCCCccc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLAL----ENNLEIIPVLNKIDLPGAEPSRVAR---EIEEVIGLDCTN 237 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~-~~~~~~----~~~~piIvViNKiDl~~~~~~~~~~---el~~~l~~~~~~ 237 (646)
..|..|+..+|+.|+|||.++....+... .+..++ ..+.|++++.||.|++++-..+... .+.+.+.-...+
T Consensus 75 ~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~ 154 (185)
T KOG0073|consen 75 SYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWR 154 (185)
T ss_pred HHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCce
Confidence 99999999999999999999876554432 222222 2478999999999998664433222 333333334457
Q ss_pred ccccccccccchhHHHHHHHHhCC
Q 043429 238 AILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
++-|||.+|+++.+-++|+++.+-
T Consensus 155 l~~cs~~tge~l~~gidWL~~~l~ 178 (185)
T KOG0073|consen 155 LVKCSAVTGEDLLEGIDWLCDDLM 178 (185)
T ss_pred EEEEeccccccHHHHHHHHHHHHH
Confidence 999999999999999999987653
No 261
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.8e-15 Score=166.04 Aligned_cols=160 Identities=33% Similarity=0.429 Sum_probs=116.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEE----------ecC----CCe
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYV----------FEN----EPF 151 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~----------~~~----~~~ 151 (646)
+-+||+||+++|||-|++.+-. ++ .......|||.......+... .++ +--
T Consensus 476 PIcCilGHVDTGKTKlld~ir~-tN--------------VqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvP 540 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRG-TN--------------VQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVP 540 (1064)
T ss_pred ceEEEeecccccchHHHHHhhc-cc--------------cccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCC
Confidence 4689999999999999999865 21 122334455544433322221 000 123
Q ss_pred EEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCC-------CCCch---
Q 043429 152 CLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP-------GAEPS--- 221 (646)
Q Consensus 152 ~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~-------~~~~~--- 221 (646)
.+.+||||||+.|.....+....||.+|||+|..+|..+||++.+.++..++.|+||.+||+|.. ++...
T Consensus 541 g~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~l 620 (1064)
T KOG1144|consen 541 GLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEAL 620 (1064)
T ss_pred eeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHH
Confidence 47799999999999999999999999999999999999999999999999999999999999953 22211
Q ss_pred -----HHHHHHHHHh----------CCCc------------ccccccccccccchhHHHHHHHHhC
Q 043429 222 -----RVAREIEEVI----------GLDC------------TNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 222 -----~~~~el~~~l----------~~~~------------~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
.+.+++...+ |++. ..++++||.+|+||.+|+-+|+++.
T Consensus 621 kkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt 686 (1064)
T KOG1144|consen 621 KKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT 686 (1064)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence 1222222211 2222 1478999999999999999998764
No 262
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.63 E-value=1.7e-15 Score=172.59 Aligned_cols=145 Identities=26% Similarity=0.298 Sum_probs=108.3
Q ss_pred cCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchhh----
Q 043429 92 AHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYE---- 167 (646)
Q Consensus 92 G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~~---- 167 (646)
|.+|+|||||+|+|.+.. ......+|+|++.....+.+. +..+++|||||+.++...
T Consensus 1 G~pNvGKSSL~N~Ltg~~---------------~~v~n~pG~Tv~~~~~~i~~~----~~~i~lvDtPG~~~~~~~s~~e 61 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN---------------QTVGNWPGVTVEKKEGKLGFQ----GEDIEIVDLPGIYSLTTFSLEE 61 (591)
T ss_pred CCCCCCHHHHHHHHhCCC---------------CeecCCCCeEEEEEEEEEEEC----CeEEEEEECCCccccCccchHH
Confidence 889999999999997621 123346788888777666664 577999999999887543
Q ss_pred --Hhhhh--hhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC-chHHHHHHHHHhCCCcccccccc
Q 043429 168 --VSRSL--AACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE-PSRVAREIEEVIGLDCTNAILCS 242 (646)
Q Consensus 168 --~~~~l--~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~-~~~~~~el~~~l~~~~~~i~~vS 242 (646)
...++ ..+|++++|+|+++.. .......+..+.++|+++|+||+|+.+.. .....+++.+.++. +++++|
T Consensus 62 ~v~~~~l~~~~aDvvI~VvDat~le--r~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~---pvv~tS 136 (591)
T TIGR00437 62 EVARDYLLNEKPDLVVNVVDASNLE--RNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGV---PVVPTS 136 (591)
T ss_pred HHHHHHHhhcCCCEEEEEecCCcch--hhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCC---CEEEEE
Confidence 22233 3689999999998742 23344445566899999999999986433 23335677777775 589999
Q ss_pred cccccchhHHHHHHHHhC
Q 043429 243 AKEGIGINEILNAIVKRI 260 (646)
Q Consensus 243 Ak~g~GV~eLl~~I~~~i 260 (646)
|++|.|++++++++.+..
T Consensus 137 A~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 137 ATEGRGIERLKDAIRKAI 154 (591)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998764
No 263
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.62 E-value=3.8e-15 Score=147.94 Aligned_cols=155 Identities=23% Similarity=0.299 Sum_probs=100.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
++|+++|++|+|||||+++|....... .. .++............+.+..+.+||||||.++.
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~-----------t~-------~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~ 62 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRS-----------TV-------TSIEPNVATFILNSEGKGKKFRLVDVPGHPKLR 62 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCC-----------cc-------CcEeecceEEEeecCCCCceEEEEECCCCHHHH
Confidence 379999999999999999997631100 00 011111111222212346789999999999999
Q ss_pred hhHhhhhhhc-cceEEEEeCCCC-ccHhhHHHH-HHHH------HcCCCeEEEEeccCCCCCCch-HHHHHHHHHhC---
Q 043429 166 YEVSRSLAAC-EGALLVVDASQG-VEAQTLANV-YLAL------ENNLEIIPVLNKIDLPGAEPS-RVAREIEEVIG--- 232 (646)
Q Consensus 166 ~~~~~~l~~a-d~~IlVvDa~~g-~~~qt~~~~-~~~~------~~~~piIvViNKiDl~~~~~~-~~~~el~~~l~--- 232 (646)
..+..+++.+ +++|+|+|+++. ........| +..+ ..++|+++|+||+|+..+... .+.+.+.+.++
T Consensus 63 ~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~ 142 (203)
T cd04105 63 DKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLR 142 (203)
T ss_pred HHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHH
Confidence 9999999998 999999999987 333333333 2221 148999999999999876543 23333322111
Q ss_pred ------CC---------------------------ccccccccccccc-chhHHHHHHHH
Q 043429 233 ------LD---------------------------CTNAILCSAKEGI-GINEILNAIVK 258 (646)
Q Consensus 233 ------~~---------------------------~~~i~~vSAk~g~-GV~eLl~~I~~ 258 (646)
+. ...++.+|++.+. |++.+.+||.+
T Consensus 143 ~~r~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 143 ESRSKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred HHHhccccccccccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 00 0146788888776 58888888754
No 264
>PTZ00099 rab6; Provisional
Probab=99.61 E-value=3.4e-15 Score=144.93 Aligned_cols=129 Identities=19% Similarity=0.202 Sum_probs=100.7
Q ss_pred eeeeeeEEEEEEEecCCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEE
Q 043429 133 ITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIP 208 (646)
Q Consensus 133 iTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIv 208 (646)
.|+........+..++..+.++||||||++.|...+..+++.+|++|+|+|+++..+++....|...+. .++|+++
T Consensus 11 ~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piil 90 (176)
T PTZ00099 11 STIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIAL 90 (176)
T ss_pred CccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 366666655556666778999999999999999999999999999999999999988888877766543 3578999
Q ss_pred EEeccCCCCCCc--hHHHHHHHHHhCCCcccccccccccccchhHHHHHHHHhCCCCC
Q 043429 209 VLNKIDLPGAEP--SRVAREIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRIPPPS 264 (646)
Q Consensus 209 ViNKiDl~~~~~--~~~~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P~ 264 (646)
|+||+|+..... .+....+...++. .++++||++|.||+++|++|++.+|...
T Consensus 91 VgNK~DL~~~~~v~~~e~~~~~~~~~~---~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 91 VGNKTDLGDLRKVTYEEGMQKAQEYNT---MFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred EEECcccccccCCCHHHHHHHHHHcCC---EEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 999999965321 2222233333333 4899999999999999999999887643
No 265
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.60 E-value=7.3e-16 Score=127.86 Aligned_cols=72 Identities=31% Similarity=0.519 Sum_probs=64.2
Q ss_pred cCCceEEeeeeeCCCCCHHHHHHHHHHHhhcCCceEEE--eCCCccccceeEeccchhhHHHHHHHHHHHHcCceEEEe
Q 043429 336 EATPMVFCGLFPVDADQFPELRDALEKLQLNDAALKFE--PETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITT 412 (646)
Q Consensus 336 ~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~~~--~e~~~~lg~g~r~gflG~lHlei~~erL~~e~~~~v~~t 412 (646)
+|+|+++.+|.|.++.|+++|.+||.+|.++||+|.+. .+|++.+..| +|++||||+.+||+++||+++.++
T Consensus 1 ~p~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g-----~Gelhlev~~~~L~~~~~v~v~~~ 74 (75)
T PF14492_consen 1 FPPPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSG-----MGELHLEVLLERLKRRFGVEVEFG 74 (75)
T ss_dssp SSS-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEE-----SSHHHHHHHHHHHHHTTCEBEEEE
T ss_pred CCCCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEE-----CCHHHHHHHHHHHHHHHCCeeEec
Confidence 47899999999999999999999999999999999997 4677766555 999999999999999999999886
No 266
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.60 E-value=1.3e-14 Score=137.20 Aligned_cols=153 Identities=22% Similarity=0.245 Sum_probs=100.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc---
Q 043429 88 FSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF--- 164 (646)
Q Consensus 88 I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df--- 164 (646)
|+++|++|+|||||++.|++..... ..+...+.|..... +.. ...+.+|||||+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~-------------~~~~~~~~t~~~~~----~~~---~~~~~~~D~~g~~~~~~~ 61 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLA-------------RTSKTPGKTQLINF----FNV---NDKFRLVDLPGYGYAKVS 61 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcee-------------eecCCCCcceeEEE----EEc---cCeEEEecCCCccccccC
Confidence 7999999999999999998421110 01122233332211 111 228889999997653
Q ss_pred -------hhhHhhhhh---hccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC-chHHHHHHHHHhC-
Q 043429 165 -------SYEVSRSLA---ACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE-PSRVAREIEEVIG- 232 (646)
Q Consensus 165 -------~~~~~~~l~---~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~-~~~~~~el~~~l~- 232 (646)
...+..++. .++++++++|.....+......+......+.|+++|+||+|+.... .......+...+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~ 141 (170)
T cd01876 62 KEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKL 141 (170)
T ss_pred HHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHh
Confidence 233333444 3567899999988766665555555666789999999999985432 2223333443332
Q ss_pred -CCcccccccccccccchhHHHHHHHHhC
Q 043429 233 -LDCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 233 -~~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
....+++++||+++.|+++++++|.+.+
T Consensus 142 ~~~~~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 142 FEIDPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred ccCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 3445799999999999999999998753
No 267
>PLN00023 GTP-binding protein; Provisional
Probab=99.60 E-value=1.2e-14 Score=151.66 Aligned_cols=138 Identities=22% Similarity=0.240 Sum_probs=99.6
Q ss_pred cCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeE--EEEEEEe----------
Q 043429 79 KVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQA--ARMRYVF---------- 146 (646)
Q Consensus 79 ~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~--~~~~~~~---------- 146 (646)
..++....||+++|+.|+|||||+++|+.... .. ....|+.... ..+.+..
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F-----------~~------~~~pTIG~d~~ik~I~~~~~~~~~~~ik~ 77 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSS-----------IA------RPPQTIGCTVGVKHITYGSPGSSSNSIKG 77 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCc-----------cc------ccCCceeeeEEEEEEEECCcccccccccc
Confidence 44555667999999999999999999986211 11 1112333322 2222221
Q ss_pred -cCCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc----------------CCCeEEE
Q 043429 147 -ENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----------------NLEIIPV 209 (646)
Q Consensus 147 -~~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~----------------~~piIvV 209 (646)
++..+.++||||+|++.|...+..+++.+|++|+|+|+++..++..+..|...+.. ++|+++|
T Consensus 78 d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILV 157 (334)
T PLN00023 78 DSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVI 157 (334)
T ss_pred cCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEE
Confidence 12468899999999999999999999999999999999999999999888766542 3789999
Q ss_pred EeccCCCCCC--------chHHHHHHHHHhCC
Q 043429 210 LNKIDLPGAE--------PSRVAREIEEVIGL 233 (646)
Q Consensus 210 iNKiDl~~~~--------~~~~~~el~~~l~~ 233 (646)
+||+||...+ ..+..+++.+..++
T Consensus 158 GNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 158 GNKADIAPKEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred EECccccccccccccccccHHHHHHHHHHcCC
Confidence 9999996532 23445556555553
No 268
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.58 E-value=2.2e-14 Score=143.46 Aligned_cols=158 Identities=20% Similarity=0.187 Sum_probs=113.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|+.|+|||||+++|..... .+....|+............+....+.+|||+|+.+|.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~-----------------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~ 68 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF-----------------PEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYR 68 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC-----------------cccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHH
Confidence 6999999999999999999987211 11222344433333333322336789999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCC-CccHhhHHHHHHHHHc----CCCeEEEEeccCCCCCCchHH-----------HHHHH-
Q 043429 166 YEVSRSLAACEGALLVVDASQ-GVEAQTLANVYLALEN----NLEIIPVLNKIDLPGAEPSRV-----------AREIE- 228 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~-g~~~qt~~~~~~~~~~----~~piIvViNKiDl~~~~~~~~-----------~~el~- 228 (646)
..+..++..++++++++|.+. ....+....|...+.. +.|+++|+||+|+........ .....
T Consensus 69 ~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (219)
T COG1100 69 SLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAP 148 (219)
T ss_pred HHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHh
Confidence 999999999999999999998 5556667788766553 589999999999976642110 11111
Q ss_pred --HHh-CCCcccccccccc--cccchhHHHHHHHHhCC
Q 043429 229 --EVI-GLDCTNAILCSAK--EGIGINEILNAIVKRIP 261 (646)
Q Consensus 229 --~~l-~~~~~~i~~vSAk--~g~GV~eLl~~I~~~ip 261 (646)
... .... .++++|++ ++.+|.+++..+...+.
T Consensus 149 ~~~~~~~~~~-~~~~~s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 149 KAVLPEVANP-ALLETSAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred HHhhhhhccc-ceeEeecccCCCcCHHHHHHHHHHHHH
Confidence 111 1122 38999999 99999999999888764
No 269
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.56 E-value=9.5e-15 Score=132.05 Aligned_cols=151 Identities=23% Similarity=0.330 Sum_probs=112.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
..+.++|-.++|||||++.+.. | +++. .-+.|+++.. +++..+...+.+||.||+..|.
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~--g---------~~~e------dmiptvGfnm----rk~tkgnvtiklwD~gGq~rfr 79 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIAR--G---------QYLE------DMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFR 79 (186)
T ss_pred eeEEEEeeccCCcceEEEEEee--c---------cchh------hhccccccee----EEeccCceEEEEEecCCCccHH
Confidence 3689999999999999987643 1 1111 2233555543 3344568899999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhh-HHHHHHHHH----cCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCc-----
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQT-LANVYLALE----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDC----- 235 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt-~~~~~~~~~----~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~----- 235 (646)
..|.++.+.+++++++|||+++..... ...+...+. .++|+++.+||.|++++-.. .++-+.+|+..
T Consensus 80 smWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~---~~li~rmgL~sitdRE 156 (186)
T KOG0075|consen 80 SMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSK---IALIERMGLSSITDRE 156 (186)
T ss_pred HHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccH---HHHHHHhCccccccce
Confidence 999999999999999999998654322 223333332 48999999999999988543 34445555432
Q ss_pred ccccccccccccchhHHHHHHHHhC
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
..++.+|+++..|++.+++||+++.
T Consensus 157 vcC~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 157 VCCFSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred EEEEEEEEcCCccHHHHHHHHHHHh
Confidence 2478899999999999999999875
No 270
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.55 E-value=1.3e-14 Score=134.16 Aligned_cols=135 Identities=28% Similarity=0.315 Sum_probs=91.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc---
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV--- 162 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~--- 162 (646)
++|.+||.+|+|||||+++|.+..... .-|.. +.| .=++|||||-.
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~-------------------~KTq~-----i~~-------~~~~IDTPGEyiE~ 50 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRY-------------------KKTQA-----IEY-------YDNTIDTPGEYIEN 50 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCc-------------------Cccce-----eEe-------cccEEECChhheeC
Confidence 689999999999999999996622111 11211 112 22479999953
Q ss_pred -cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCC--CCCchHHHHHHHHHhCCCccccc
Q 043429 163 -DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP--GAEPSRVAREIEEVIGLDCTNAI 239 (646)
Q Consensus 163 -df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~--~~~~~~~~~el~~~l~~~~~~i~ 239 (646)
.|..........||.+++|.|++++.+.-- -..+...+.|+|=|+||+|++ +++.+...+.+ +..|.. ++|
T Consensus 51 ~~~y~aLi~ta~dad~V~ll~dat~~~~~~p---P~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L-~~aG~~--~if 124 (143)
T PF10662_consen 51 PRFYHALIVTAQDADVVLLLQDATEPRSVFP---PGFASMFNKPVIGVITKIDLPSDDANIERAKKWL-KNAGVK--EIF 124 (143)
T ss_pred HHHHHHHHHHHhhCCEEEEEecCCCCCccCC---chhhcccCCCEEEEEECccCccchhhHHHHHHHH-HHcCCC--CeE
Confidence 233334445567999999999998643211 112233478999999999998 45544443333 344665 579
Q ss_pred ccccccccchhHHHHHHH
Q 043429 240 LCSAKEGIGINEILNAIV 257 (646)
Q Consensus 240 ~vSAk~g~GV~eLl~~I~ 257 (646)
++|+.+|+||++|.++|-
T Consensus 125 ~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 125 EVSAVTGEGIEELKDYLE 142 (143)
T ss_pred EEECCCCcCHHHHHHHHh
Confidence 999999999999999874
No 271
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.54 E-value=2.4e-15 Score=140.04 Aligned_cols=160 Identities=17% Similarity=0.205 Sum_probs=122.7
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCC
Q 043429 81 PASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPG 160 (646)
Q Consensus 81 ~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG 160 (646)
+.+...+++|+|..++||||++.+++. |...+. + .-||..++..-.....++...+.+|||+|
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryCk--gifTkd---------y------kktIgvdflerqi~v~~Edvr~mlWdtag 78 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYCK--GIFTKD---------Y------KKTIGVDFLERQIKVLIEDVRSMLWDTAG 78 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHhc--cccccc---------c------ccccchhhhhHHHHhhHHHHHHHHHHhcc
Confidence 345678999999999999999999985 211111 1 11444333333333344567788999999
Q ss_pred CccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH---cCCCeEEEEeccCCCCCCc--hHHHHHHHHHhCCCc
Q 043429 161 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NNLEIIPVLNKIDLPGAEP--SRVAREIEEVIGLDC 235 (646)
Q Consensus 161 ~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~---~~~piIvViNKiDl~~~~~--~~~~~el~~~l~~~~ 235 (646)
+++|...+..|+++|.+++||++.++..+++....|+.... ..+|.++|-||+|+..... ....+.+.+.+...
T Consensus 79 qeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~R- 157 (246)
T KOG4252|consen 79 QEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKR- 157 (246)
T ss_pred chhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhh-
Confidence 99999999999999999999999999999999999987766 4799999999999865432 23344555555554
Q ss_pred ccccccccccccchhHHHHHHHHhC
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
.+.+|++...||.++|..+.+.+
T Consensus 158 --lyRtSvked~NV~~vF~YLaeK~ 180 (246)
T KOG4252|consen 158 --LYRTSVKEDFNVMHVFAYLAEKL 180 (246)
T ss_pred --hhhhhhhhhhhhHHHHHHHHHHH
Confidence 78999999999999999998754
No 272
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.54 E-value=5.5e-14 Score=142.68 Aligned_cols=165 Identities=27% Similarity=0.410 Sum_probs=119.5
Q ss_pred ccccccCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEE
Q 043429 74 QDRLLKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCL 153 (646)
Q Consensus 74 ~~~~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l 153 (646)
++..-.++.+.|..+++||-||+|||||+++|......+ ..-.-+|+..+..++.|. +...+
T Consensus 185 ~e~~~~lELKsiadvGLVG~PNAGKSTLL~als~AKpkV---------------a~YaFTTL~P~iG~v~yd---df~q~ 246 (366)
T KOG1489|consen 185 EERVIELELKSIADVGLVGFPNAGKSTLLNALSRAKPKV---------------AHYAFTTLRPHIGTVNYD---DFSQI 246 (366)
T ss_pred ceEEEEEEeeeecccceecCCCCcHHHHHHHhhccCCcc---------------cccceeeeccccceeecc---cccee
Confidence 344445556667899999999999999999997632222 112235777766666555 12349
Q ss_pred EEEeCCCCcc-------chhhHhhhhhhccceEEEEeCCCC---ccHhhHHHHHHHHH------cCCCeEEEEeccCCCC
Q 043429 154 NLIDTPGHVD-------FSYEVSRSLAACEGALLVVDASQG---VEAQTLANVYLALE------NNLEIIPVLNKIDLPG 217 (646)
Q Consensus 154 ~liDTPG~~d-------f~~~~~~~l~~ad~~IlVvDa~~g---~~~qt~~~~~~~~~------~~~piIvViNKiDl~~ 217 (646)
++-|.||... ......+.+..|+..++|+|.+.+ .-.+.++.+...++ .+.|.++|+||+|++.
T Consensus 247 tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~e 326 (366)
T KOG1489|consen 247 TVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPE 326 (366)
T ss_pred EeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchh
Confidence 9999999764 345667788889999999999988 55566665555544 3789999999999974
Q ss_pred CCchHHHHHHHHHhCCCcccccccccccccchhHHHHHHHHh
Q 043429 218 AEPSRVAREIEEVIGLDCTNAILCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 218 ~~~~~~~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ 259 (646)
+. +..++++.+.+.-+ .++++||++++|+++|++.|.+.
T Consensus 327 ae-~~~l~~L~~~lq~~--~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 327 AE-KNLLSSLAKRLQNP--HVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred HH-HHHHHHHHHHcCCC--cEEEeeeccccchHHHHHHHhhc
Confidence 43 23346666666433 48999999999999999987653
No 273
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.53 E-value=6e-14 Score=142.35 Aligned_cols=147 Identities=22% Similarity=0.318 Sum_probs=97.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch-
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS- 165 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~- 165 (646)
+|+++|.+|+|||||+++|.+.... .....+.|.......+.+. +..+++|||||+.+..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~---------------v~~~~~tT~~~~~g~~~~~----~~~i~l~DtpG~~~~~~ 62 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE---------------VAAYEFTTLTCVPGVLEYK----GAKIQLLDLPGIIEGAA 62 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc---------------ccCCCCccccceEEEEEEC----CeEEEEEECCCcccccc
Confidence 6899999999999999999763111 1112344555554555554 7889999999986432
Q ss_pred ------hhHhhhhhhccceEEEEeCCCCcc-Hh--------------------------------------------hHH
Q 043429 166 ------YEVSRSLAACEGALLVVDASQGVE-AQ--------------------------------------------TLA 194 (646)
Q Consensus 166 ------~~~~~~l~~ad~~IlVvDa~~g~~-~q--------------------------------------------t~~ 194 (646)
..+...++.+|++++|+|+++... .+ +..
T Consensus 63 ~~~~~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~ 142 (233)
T cd01896 63 DGKGRGRQVIAVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIK 142 (233)
T ss_pred cchhHHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHH
Confidence 244567889999999999986542 11 111
Q ss_pred HH----------------------HHHHHc---CCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcccccccccccccch
Q 043429 195 NV----------------------YLALEN---NLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGI 249 (646)
Q Consensus 195 ~~----------------------~~~~~~---~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~~vSAk~g~GV 249 (646)
.+ ..++.. -+|+++|+||+|+.... + .+.+. .. .+++++||++|.|+
T Consensus 143 ~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~--~-~~~~~---~~--~~~~~~SA~~g~gi 214 (233)
T cd01896 143 AILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIE--E-LDLLA---RQ--PNSVVISAEKGLNL 214 (233)
T ss_pred HHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHH--H-HHHHh---cC--CCEEEEcCCCCCCH
Confidence 11 111111 25899999999985322 1 12221 11 24899999999999
Q ss_pred hHHHHHHHHhC
Q 043429 250 NEILNAIVKRI 260 (646)
Q Consensus 250 ~eLl~~I~~~i 260 (646)
+++++.|.+.+
T Consensus 215 ~~l~~~i~~~L 225 (233)
T cd01896 215 DELKERIWDKL 225 (233)
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 274
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.51 E-value=2.6e-13 Score=136.96 Aligned_cols=163 Identities=22% Similarity=0.245 Sum_probs=107.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH 161 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~ 161 (646)
..+..+|++||.+|+|||||.|.+++..-.. +.+...+|....... ...+...+.|+||||.
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~--------------vS~K~~TTr~~ilgi----~ts~eTQlvf~DTPGl 130 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSA--------------VSRKVHTTRHRILGI----ITSGETQLVFYDTPGL 130 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCcccc--------------ccccccceeeeeeEE----EecCceEEEEecCCcc
Confidence 3467899999999999999999998843221 222222333222222 2334789999999997
Q ss_pred cc------------chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-cCCCeEEEEeccCCCCCC---------
Q 043429 162 VD------------FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-NNLEIIPVLNKIDLPGAE--------- 219 (646)
Q Consensus 162 ~d------------f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-~~~piIvViNKiDl~~~~--------- 219 (646)
.. +.....+++..||.+++|+|+++.-..-.-..+....+ .++|-++|.||+|.....
T Consensus 131 vs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~ 210 (379)
T KOG1423|consen 131 VSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDL 210 (379)
T ss_pred cccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHh
Confidence 53 22234568888999999999996433333333333333 489999999999965321
Q ss_pred -----chHHHHHHHHHhCCCc--------------ccccccccccccchhHHHHHHHHhCCC
Q 043429 220 -----PSRVAREIEEVIGLDC--------------TNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 220 -----~~~~~~el~~~l~~~~--------------~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
.....-++++.+...+ +.+|.+||++|+||+++.++|..+.|+
T Consensus 211 Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 211 LTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred ccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 1111223444443211 258999999999999999999998764
No 275
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=8.1e-14 Score=131.94 Aligned_cols=153 Identities=22% Similarity=0.279 Sum_probs=117.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
.-.+|.++|--++||||++.+|-. +.+ . ..-.|++.+...+.|+ ++.+++||..|+..
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~--~E~---------v-------ttvPTiGfnVE~v~yk----n~~f~vWDvGGq~k 73 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKL--GEI---------V-------TTVPTIGFNVETVEYK----NISFTVWDVGGQEK 73 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeecc--CCc---------c-------cCCCccccceeEEEEc----ceEEEEEecCCCcc
Confidence 346899999999999999988743 111 1 1123888888888888 89999999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhH-HHHHHHHH----cCCCeEEEEeccCCCCCCchHHHHHHHHHhCC-----
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL----- 233 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~-~~~~~~~~----~~~piIvViNKiDl~~~~~~~~~~el~~~l~~----- 233 (646)
++..|..|+...+++|+|||+++....... +.+...+. .+.|++++.||.|++++-... ++.+.+++
T Consensus 74 ~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~---ei~~~L~l~~l~~ 150 (181)
T KOG0070|consen 74 LRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAA---EITNKLGLHSLRS 150 (181)
T ss_pred cccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHH---HHHhHhhhhccCC
Confidence 999999999999999999999987554333 22222222 378999999999999886532 33333332
Q ss_pred CcccccccccccccchhHHHHHHHHhCC
Q 043429 234 DCTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 234 ~~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
....+..++|.+|+|+.+-++|+.+.+.
T Consensus 151 ~~w~iq~~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 151 RNWHIQSTCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred CCcEEeeccccccccHHHHHHHHHHHHh
Confidence 2235788999999999999999988764
No 276
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=4.8e-13 Score=120.15 Aligned_cols=152 Identities=19% Similarity=0.211 Sum_probs=117.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|..+|-.++||||++-.|.-..... .-.|++.+..++.|+ +..+|+||..|+...+
T Consensus 18 ~~ilmlGLd~aGKTtiLyKLkl~~~~~------------------~ipTvGFnvetVtyk----N~kfNvwdvGGqd~iR 75 (180)
T KOG0071|consen 18 MRILMLGLDAAGKTTILYKLKLGQSVT------------------TIPTVGFNVETVTYK----NVKFNVWDVGGQDKIR 75 (180)
T ss_pred ceEEEEecccCCceehhhHHhcCCCcc------------------cccccceeEEEEEee----eeEEeeeeccCchhhh
Confidence 489999999999999999886522111 112677777778887 8999999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhH-HHHHHHHH----cCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCc-----
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDC----- 235 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~-~~~~~~~~----~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~----- 235 (646)
..|.+|+.+..++|+|+|+.+....+.. ..++.++. .++|+++..||.|++++... +++.+.+++..
T Consensus 76 plWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~p---qei~d~leLe~~r~~~ 152 (180)
T KOG0071|consen 76 PLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKP---QEIQDKLELERIRDRN 152 (180)
T ss_pred HHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCH---HHHHHHhccccccCCc
Confidence 9999999999999999999877443332 33334433 37899999999999998753 34555554432
Q ss_pred ccccccccccccchhHHHHHHHHhCCC
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
.-+.++||.+|.|+.+-|.|+.+.+.+
T Consensus 153 W~vqp~~a~~gdgL~eglswlsnn~~~ 179 (180)
T KOG0071|consen 153 WYVQPSCALSGDGLKEGLSWLSNNLKE 179 (180)
T ss_pred cEeeccccccchhHHHHHHHHHhhccC
Confidence 347899999999999999999887654
No 277
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.49 E-value=8.9e-14 Score=125.28 Aligned_cols=113 Identities=24% Similarity=0.275 Sum_probs=77.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
||+|+|+.|+|||||+++|++.... +........+.++....... ......+.+||++|+..+..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~d~~g~~~~~~ 65 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP-----------DNSVPEETSEITIGVDVIVV----DGDRQSLQFWDFGGQEEFYS 65 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-------------------SSTTSCEEEEEEEE----TTEEEEEEEEEESSSHCHHC
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc-----------ccccccccCCCcEEEEEEEe----cCCceEEEEEecCccceecc
Confidence 6899999999999999999984322 00011112223333222222 22245589999999998888
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHH---HHHHH---cCCCeEEEEeccC
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANV---YLALE---NNLEIIPVLNKID 214 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~---~~~~~---~~~piIvViNKiD 214 (646)
.....+..+|++++|+|+++..+++.+..+ ..... .++|+++|+||.|
T Consensus 66 ~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 66 QHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp TSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred cccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 777779999999999999998777665433 33333 3699999999998
No 278
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.47 E-value=3.8e-13 Score=149.90 Aligned_cols=154 Identities=21% Similarity=0.303 Sum_probs=119.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+++++|.||+|||||.|+|.+. +..+..=+|.|++-....+.+. +..++++|.||...+.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~---------------~q~VgNwpGvTVEkkeg~~~~~----~~~i~ivDLPG~YSL~ 64 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGA---------------NQKVGNWPGVTVEKKEGKLKYK----GHEIEIVDLPGTYSLT 64 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhcc---------------CceecCCCCeeEEEEEEEEEec----CceEEEEeCCCcCCCC
Confidence 46999999999999999999762 2234455789999888888777 7889999999987654
Q ss_pred hh------Hhhhhh--hccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCC-CchHHHHHHHHHhCCCcc
Q 043429 166 YE------VSRSLA--ACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGA-EPSRVAREIEEVIGLDCT 236 (646)
Q Consensus 166 ~~------~~~~l~--~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~-~~~~~~~el~~~l~~~~~ 236 (646)
.. ..+++. ..|+++-|+||++ -...+....+.++.+.|+++++|++|.... ...-..+.+++.+|.+
T Consensus 65 ~~S~DE~Var~~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvP-- 140 (653)
T COG0370 65 AYSEDEKVARDFLLEGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVP-- 140 (653)
T ss_pred CCCchHHHHHHHHhcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCC--
Confidence 31 233443 4799999999987 234445556777889999999999997543 2233356788889986
Q ss_pred cccccccccccchhHHHHHHHHhCCCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip~P 263 (646)
++++||++|.|++++++.+.+..+..
T Consensus 141 -Vv~tvA~~g~G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 141 -VVPTVAKRGEGLEELKRAIIELAESK 166 (653)
T ss_pred -EEEEEeecCCCHHHHHHHHHHhcccc
Confidence 99999999999999999998876553
No 279
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.5e-13 Score=127.96 Aligned_cols=163 Identities=17% Similarity=0.146 Sum_probs=119.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhc-CCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMT-GTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~-~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+.|+|.-++|||||++++-..- +.. ..++++ +--.|++.+..++... +..+.+||..|+...
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt~~~~~~----------~~l~~~-ki~~tvgLnig~i~v~----~~~l~fwdlgGQe~l 82 (197)
T KOG0076|consen 18 YSVLILGLDNAGKTTFLEALKTDFSKAY----------GGLNPS-KITPTVGLNIGTIEVC----NAPLSFWDLGGQESL 82 (197)
T ss_pred hhheeeccccCCchhHHHHHHHHHHhhh----------cCCCHH-Heecccceeecceeec----cceeEEEEcCChHHH
Confidence 578999999999999999885411 000 001111 1123677777666665 788999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHH-----HHHHHcCCCeEEEEeccCCCCCCchHHHHHH---HHHhCCCcc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANV-----YLALENNLEIIPVLNKIDLPGAEPSRVAREI---EEVIGLDCT 236 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~-----~~~~~~~~piIvViNKiDl~~~~~~~~~~el---~~~l~~~~~ 236 (646)
.+.|..++..|+++|++|||++..-++..... ......+.|+++.+||-|+.++.....++.. .+..+-+..
T Consensus 83 rSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~ 162 (197)
T KOG0076|consen 83 RSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDN 162 (197)
T ss_pred HHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccC
Confidence 99999999999999999999996554443322 2333469999999999999876543322222 233445556
Q ss_pred cccccccccccchhHHHHHHHHhCCCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip~P 263 (646)
++.++||.+|+||++-.+|++..++.-
T Consensus 163 ~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 163 PFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ccccchhhhcccHHHHHHHHHHHHhhc
Confidence 899999999999999999999988653
No 280
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.46 E-value=5.4e-13 Score=131.86 Aligned_cols=161 Identities=14% Similarity=0.150 Sum_probs=99.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|.+|+|||||+|+|++...... + ..... ...+|.... .|.. .....+.+|||||..+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~--~--~~~~~------~~~~t~~~~----~~~~-~~~~~l~l~DtpG~~~~~ 66 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEE--G--AAPTG------VVETTMKRT----PYPH-PKFPNVTLWDLPGIGSTA 66 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCC--C--ccccC------ccccccCce----eeec-CCCCCceEEeCCCCCccc
Confidence 4799999999999999999987321100 0 00000 000111111 1211 113468999999987643
Q ss_pred hhHhhh-----hhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC----------chHHHHHHHHH
Q 043429 166 YEVSRS-----LAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE----------PSRVAREIEEV 230 (646)
Q Consensus 166 ~~~~~~-----l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~----------~~~~~~el~~~ 230 (646)
.....+ +..+|++++|.| .+.+......+......+.|+++|+||+|+...+ .++..+++++.
T Consensus 67 ~~~~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~ 144 (197)
T cd04104 67 FPPDDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDN 144 (197)
T ss_pred CCHHHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHH
Confidence 332233 456788777754 3455555555555566689999999999984211 22334443332
Q ss_pred ----h---CCCcccccccccc--cccchhHHHHHHHHhCCCC
Q 043429 231 ----I---GLDCTNAILCSAK--EGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 231 ----l---~~~~~~i~~vSAk--~g~GV~eLl~~I~~~ip~P 263 (646)
+ +....++|.+|+. .+.|+..|.+.|...+|..
T Consensus 145 ~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 145 CLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred HHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 2 2455579999999 6899999999999998864
No 281
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.46 E-value=1.2e-13 Score=133.90 Aligned_cols=158 Identities=18% Similarity=0.205 Sum_probs=115.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEe-cCCCeEEEEEeCCCCcc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVF-ENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~-~~~~~~l~liDTPG~~d 163 (646)
-++++|+|+..+|||+|+..+.. +..+.. .-.|+. ......... +++.+.+.||||+|+++
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~--~~fp~~---------------yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqed 65 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTT--NAFPEE---------------YVPTVF-DNYSANVTVDDGKPVELGLWDTAGQED 65 (198)
T ss_pred eeEEEEECCCCcCceEEEEEecc--CcCccc---------------ccCeEE-ccceEEEEecCCCEEEEeeeecCCCcc
Confidence 36899999999999999866533 222211 112333 333344455 47789999999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhH-HHHHHHHHc---CCCeEEEEeccCCCCCC--------------chHHHH
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALEN---NLEIIPVLNKIDLPGAE--------------PSRVAR 225 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~-~~~~~~~~~---~~piIvViNKiDl~~~~--------------~~~~~~ 225 (646)
|.....-++..+|.+|++++..+..+++.+ ..|.-.+++ +.|+|+|++|.||.... ..+...
T Consensus 66 YDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~ 145 (198)
T KOG0393|consen 66 YDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGL 145 (198)
T ss_pred cccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHH
Confidence 988777799999999999999999998875 567666654 68899999999986321 112233
Q ss_pred HHHHHhCCCcccccccccccccchhHHHHHHHHhCCC
Q 043429 226 EIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 226 el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
++++.+|. ..+++|||++..|+.++|+..+...-.
T Consensus 146 ~lA~~iga--~~y~EcSa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 146 ELAKEIGA--VKYLECSALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred HHHHHhCc--ceeeeehhhhhCCcHHHHHHHHHHHhc
Confidence 45555553 359999999999999999998876543
No 282
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=3.1e-13 Score=135.79 Aligned_cols=183 Identities=27% Similarity=0.345 Sum_probs=137.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEE-EEecC--------------
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMR-YVFEN-------------- 148 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~-~~~~~-------------- 148 (646)
...||+-|||+-|||||++.++..-. . -.+..|-||.||++...+... |+.++
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~---T---------vrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS 104 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVH---T---------VRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGS 104 (466)
T ss_pred eeeeecceeccccCcceeeeeeccce---E---------EEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCC
Confidence 35799999999999999999885411 0 122345678888887655432 22110
Q ss_pred --------------CC----eEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCC-ccHhhHHHHHHHHHcCCC-eEE
Q 043429 149 --------------EP----FCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG-VEAQTLANVYLALENNLE-IIP 208 (646)
Q Consensus 149 --------------~~----~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g-~~~qt~~~~~~~~~~~~p-iIv 208 (646)
.. ..+.++|+|||.-....+....+..|+++|++.+++. .++||-+++....-+.+. +++
T Consensus 105 ~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhiii 184 (466)
T KOG0466|consen 105 SKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIII 184 (466)
T ss_pred CCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEE
Confidence 01 2367999999998888888888889999999998875 678998887665555554 888
Q ss_pred EEeccCCCCCCc-hHHHHHHHHHh---CCCcccccccccccccchhHHHHHHHHhCCCCCCCCCCCceEEEEEE
Q 043429 209 VLNKIDLPGAEP-SRVAREIEEVI---GLDCTNAILCSAKEGIGINEILNAIVKRIPPPSNTAGCPFRALIFDR 278 (646)
Q Consensus 209 ViNKiDl~~~~~-~~~~~el~~~l---~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P~~~~~~pl~~~vf~~ 278 (646)
+-||+|+...+. .+..+++..++ .....|++++||.-+.|++-+.++|++.+|.|..+...|.++.|+.|
T Consensus 185 lQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~s~prlIVIRS 258 (466)
T KOG0466|consen 185 LQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFTSPPRLIVIRS 258 (466)
T ss_pred EechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccccCCCCcEEEEEe
Confidence 999999976543 23344555554 23456899999999999999999999999999999999999988765
No 283
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.41 E-value=1.1e-12 Score=135.06 Aligned_cols=220 Identities=19% Similarity=0.196 Sum_probs=148.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCcc-ccccccccccccccccccceeeeeeEEE-------------------EEEE
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQ-KREMKEQFLDNMDLERERGITIKLQAAR-------------------MRYV 145 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~-~~~~~~~~~d~~~~e~e~giTi~~~~~~-------------------~~~~ 145 (646)
.+|+++|.+++|||||+.-|.. +.+. .++...+-+-....|-+.|.|.....-- +.|.
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTH--geLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTH--GELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred EEEEEEecccCCcceeEeeeee--cccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 5899999999999999987754 2222 1222333333444455555554332222 2222
Q ss_pred e--cCCCeEEEEEeCCCCccchhhHhhhhh--hccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCc-
Q 043429 146 F--ENEPFCLNLIDTPGHVDFSYEVSRSLA--ACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEP- 220 (646)
Q Consensus 146 ~--~~~~~~l~liDTPG~~df~~~~~~~l~--~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~- 220 (646)
. ++....+++||.+||+.|...+.-.+. ..|..+|++-++.|+-..|.+++-+++..++|+++|++|+|+..++.
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPANiL 291 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPANIL 291 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcHHHH
Confidence 1 122345899999999998766544443 47999999999999999999999999999999999999999988774
Q ss_pred hHHHHHHHHHhCCCc--------------------------ccccccccccccchhHHHHHHHHhCCCC-CCCCCCCceE
Q 043429 221 SRVAREIEEVIGLDC--------------------------TNAILCSAKEGIGINEILNAIVKRIPPP-SNTAGCPFRA 273 (646)
Q Consensus 221 ~~~~~el~~~l~~~~--------------------------~~i~~vSAk~g~GV~eLl~~I~~~ip~P-~~~~~~pl~~ 273 (646)
++.++-+.+.+..+. +|+|.+|..+|.|++-|.. ..+.++.- ....+.|...
T Consensus 292 qEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkm-FLNlls~R~~~~E~~PAeF 370 (641)
T KOG0463|consen 292 QETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKM-FLNLLSLRRQLNENDPAEF 370 (641)
T ss_pred HHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHH-HHhhcCcccccccCCCcce
Confidence 555666666553321 3799999999999965544 44555432 3345566655
Q ss_pred EEEEEEeeccceEEecCCCceEEccceeeEEEeecccccccccCCeeeecCc
Q 043429 274 LIFDRIIMLMKLECYPPIKCKWKNFKQVGYLSASIRSVADARVGDTITHFNR 325 (646)
Q Consensus 274 ~vf~~~~d~~~~i~~~~~~~~~~vaG~Vg~i~~~i~~~~~~~~GDtl~~~~~ 325 (646)
.|=| +| -|+| ||.++.|..-.+.++..|++.....
T Consensus 371 QIDD--------~Y--------~VpG-VGTvvSGT~L~GtIrLND~LlLGPd 405 (641)
T KOG0463|consen 371 QIDD--------IY--------WVPG-VGTVVSGTLLSGTIRLNDILLLGPD 405 (641)
T ss_pred eecc--------eE--------ecCC-cceEeecceeeeeEEeccEEEecCC
Confidence 5533 33 3335 7777776555667888898876543
No 284
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.41 E-value=1.9e-12 Score=116.57 Aligned_cols=107 Identities=29% Similarity=0.297 Sum_probs=73.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc--
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF-- 164 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df-- 164 (646)
+|+|+|.+|+|||||+++|++... .......+.|.........+. +..+.++||||..+-
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~--------------~~~~~~~~~T~~~~~~~~~~~----~~~~~~vDtpG~~~~~~ 62 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKL--------------AKVSNIPGTTRDPVYGQFEYN----NKKFILVDTPGINDGES 62 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTS--------------SEESSSTTSSSSEEEEEEEET----TEEEEEEESSSCSSSSH
T ss_pred CEEEECCCCCCHHHHHHHHhcccc--------------ccccccccceeeeeeeeeeec----eeeEEEEeCCCCcccch
Confidence 589999999999999999986211 112334455666533333343 677789999998652
Q ss_pred -------hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEec
Q 043429 165 -------SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNK 212 (646)
Q Consensus 165 -------~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNK 212 (646)
.....+.+..+|++++|+|+.+..... ...+...++.+.|+++|+||
T Consensus 63 ~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~-~~~~~~~l~~~~~~i~v~NK 116 (116)
T PF01926_consen 63 QDNDGKEIRKFLEQISKSDLIIYVVDASNPITED-DKNILRELKNKKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHH-HHHHHHHHHTTSEEEEEEES
T ss_pred hhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHH-HHHHHHHHhcCCCEEEEEcC
Confidence 123445667899999999988743333 33333333588999999998
No 285
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.39 E-value=8.1e-12 Score=126.11 Aligned_cols=138 Identities=17% Similarity=0.200 Sum_probs=98.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
.+.|+++|++|+|||||++.|+...... ......|. + .+ + ...+..++++||||+.
T Consensus 39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~-------------~~~~~~g~-i-----~i-~--~~~~~~i~~vDtPg~~-- 94 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQ-------------NISDIKGP-I-----TV-V--TGKKRRLTFIECPNDI-- 94 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccC-------------cccccccc-E-----EE-E--ecCCceEEEEeCCchH--
Confidence 3679999999999999999998742111 01112231 1 11 1 1136788999999975
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCe-EEEEeccCCCCCC--chHHHHHHHHHhC---CCcccc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEI-IPVLNKIDLPGAE--PSRVAREIEEVIG---LDCTNA 238 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~pi-IvViNKiDl~~~~--~~~~~~el~~~l~---~~~~~i 238 (646)
..+...+..+|.+++|+|++.+...++...|......++|. ++|+||+|+.+.. .++..+++++.+. ++..++
T Consensus 95 -~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki 173 (225)
T cd01882 95 -NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKL 173 (225)
T ss_pred -HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcE
Confidence 45556778899999999999999988888777777788995 4599999986432 3445556655332 455789
Q ss_pred ccccccccc
Q 043429 239 ILCSAKEGI 247 (646)
Q Consensus 239 ~~vSAk~g~ 247 (646)
+++||++..
T Consensus 174 ~~iSa~~~~ 182 (225)
T cd01882 174 FYLSGIVHG 182 (225)
T ss_pred EEEeeccCC
Confidence 999999874
No 286
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.36 E-value=1e-11 Score=127.38 Aligned_cols=162 Identities=23% Similarity=0.320 Sum_probs=105.0
Q ss_pred cccCCC-C-CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEE
Q 043429 77 LLKVPA-S-NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLN 154 (646)
Q Consensus 77 ~~~~~~-~-~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~ 154 (646)
|+.+|. + ..+.|+|.|+||+|||||+.++...... +..-+-+|-+.+..++++. ...++
T Consensus 158 l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpE---------------vA~YPFTTK~i~vGhfe~~----~~R~Q 218 (346)
T COG1084 158 LKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPE---------------VAPYPFTTKGIHVGHFERG----YLRIQ 218 (346)
T ss_pred HhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCc---------------cCCCCccccceeEeeeecC----CceEE
Confidence 455543 2 5789999999999999999999663221 1222335666666666655 67999
Q ss_pred EEeCCCCccch------hh--Hhhhhhh-ccceEEEEeCCC--CccHhhHHHHHHHHH--cCCCeEEEEeccCCCCCCc-
Q 043429 155 LIDTPGHVDFS------YE--VSRSLAA-CEGALLVVDASQ--GVEAQTLANVYLALE--NNLEIIPVLNKIDLPGAEP- 220 (646)
Q Consensus 155 liDTPG~~df~------~~--~~~~l~~-ad~~IlVvDa~~--g~~~qt~~~~~~~~~--~~~piIvViNKiDl~~~~~- 220 (646)
+|||||.-|-. -| ...+++. .+++++++|++. |-+.+....++..+. .+.|+++|+||+|......
T Consensus 219 vIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~ 298 (346)
T COG1084 219 VIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKL 298 (346)
T ss_pred EecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHH
Confidence 99999987621 11 1123443 566889999985 444444444444443 3689999999999864332
Q ss_pred hHHHHHHHHHhCCCcccccccccccccchhHHHHHHHHhC
Q 043429 221 SRVAREIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 221 ~~~~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
++....+... + ......+|+..+.+++.+.+.+....
T Consensus 299 ~~~~~~~~~~-~--~~~~~~~~~~~~~~~d~~~~~v~~~a 335 (346)
T COG1084 299 EEIEASVLEE-G--GEEPLKISATKGCGLDKLREEVRKTA 335 (346)
T ss_pred HHHHHHHHhh-c--cccccceeeeehhhHHHHHHHHHHHh
Confidence 2222222222 2 22367899999999998888777653
No 287
>COG2262 HflX GTPases [General function prediction only]
Probab=99.35 E-value=7.4e-12 Score=132.18 Aligned_cols=156 Identities=27% Similarity=0.269 Sum_probs=106.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
..+..|+++|-.|+|||||+|+|...... .+..--.|.+..+..+.+. .+..+.+-||-|+.
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~---------------~~d~LFATLdpttR~~~l~---~g~~vlLtDTVGFI 251 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVY---------------VADQLFATLDPTTRRIELG---DGRKVLLTDTVGFI 251 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCee---------------ccccccccccCceeEEEeC---CCceEEEecCccCc
Confidence 35789999999999999999999752111 1222234666666665554 25778899999987
Q ss_pred cch-h-------hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCCchHHHHHHHHH
Q 043429 163 DFS-Y-------EVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAEPSRVAREIEEV 230 (646)
Q Consensus 163 df~-~-------~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~~~~~~~el~~~ 230 (646)
+-. . .+......+|.+++|||++++.-.+.+......+. .++|+|+|.||+|+..... ....+...
T Consensus 252 ~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~--~~~~~~~~ 329 (411)
T COG2262 252 RDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE--ILAELERG 329 (411)
T ss_pred ccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh--hhhhhhhc
Confidence 521 1 11223456999999999999854444433333332 4689999999999754332 22233222
Q ss_pred hCCCcccccccccccccchhHHHHHHHHhCCC
Q 043429 231 IGLDCTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 231 l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
. + ..+++||++|.|++.|++.|.+.++.
T Consensus 330 ~--~--~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 330 S--P--NPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred C--C--CeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 2 1 57999999999999999999998864
No 288
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.35 E-value=8.3e-12 Score=123.23 Aligned_cols=158 Identities=19% Similarity=0.154 Sum_probs=102.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
++|+++|.+|+|||||+|.|++...... ....++.|...+.....+. +..+++|||||..+..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~-------------~~~~~~~T~~~~~~~~~~~----~~~i~viDTPG~~d~~ 63 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFES-------------KLSASSVTKTCQKESAVWD----GRRVNVIDTPGLFDTS 63 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcccc-------------ccCCCCcccccceeeEEEC----CeEEEEEECcCCCCcc
Confidence 4899999999999999999987432211 0113456776666665554 7899999999988753
Q ss_pred h-------hHhh----hhhhccceEEEEeCCCCccHhhHHHHHHHHHc-----CCCeEEEEeccCCCCCC-ch-------
Q 043429 166 Y-------EVSR----SLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPGAE-PS------- 221 (646)
Q Consensus 166 ~-------~~~~----~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~-----~~piIvViNKiDl~~~~-~~------- 221 (646)
. ++.+ +....|++|+|+|+.+ ....+...+....+. -.++++|+|++|..... .+
T Consensus 64 ~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~ 142 (196)
T cd01852 64 VSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSC 142 (196)
T ss_pred CChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhcc
Confidence 2 2222 2345789999999987 665555544444332 25789999999965432 11
Q ss_pred HHHHHHHHHhCCCc---ccccccccccccchhHHHHHHHHhCCC
Q 043429 222 RVAREIEEVIGLDC---TNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 222 ~~~~el~~~l~~~~---~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
...+.+-+..+-.. ..... |+..+.++++|++.|.+.++.
T Consensus 143 ~~l~~l~~~c~~r~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 143 EALKRLLEKCGGRYVAFNNKAK-GEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred HHHHHHHHHhCCeEEEEeCCCC-cchhHHHHHHHHHHHHHHHHh
Confidence 12223333332211 12233 578899999999999887764
No 289
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=2.8e-12 Score=137.22 Aligned_cols=156 Identities=20% Similarity=0.187 Sum_probs=112.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc-c
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD-F 164 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d-f 164 (646)
.+|+|+|.||+|||||+|+|.+....+ +..+.|+|.++-.+.++.. ++.+.|+||+|..+ -
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~~~drsI--------------VSpv~GTTRDaiea~v~~~----G~~v~L~DTAGiRe~~ 330 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALSREDRSI--------------VSPVPGTTRDAIEAQVTVN----GVPVRLSDTAGIREES 330 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCceE--------------eCCCCCcchhhheeEeecC----CeEEEEEecccccccc
Confidence 689999999999999999998854333 6778999999877777766 89999999999876 1
Q ss_pred hh--------hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc------------CCCeEEEEeccCCCCC---Cch
Q 043429 165 SY--------EVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN------------NLEIIPVLNKIDLPGA---EPS 221 (646)
Q Consensus 165 ~~--------~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~------------~~piIvViNKiDl~~~---~~~ 221 (646)
.. ...+.+..+|.+++|+|+......+.......+... ..|++++.||+|+... ...
T Consensus 331 ~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~ 410 (531)
T KOG1191|consen 331 NDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTK 410 (531)
T ss_pred CChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccC
Confidence 11 123467789999999999777666666544433332 2678999999997543 111
Q ss_pred HHHHHHHHHhCCCccc-ccccccccccchhHHHHHHHHhC
Q 043429 222 RVAREIEEVIGLDCTN-AILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 222 ~~~~el~~~l~~~~~~-i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
........ .+....+ ..++|+++++|++.|.+++.+.+
T Consensus 411 ~~~~~~~~-~~~~~~~i~~~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 411 IPVVYPSA-EGRSVFPIVVEVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred Cceecccc-ccCcccceEEEeeechhhhHHHHHHHHHHHH
Confidence 11112222 2322233 45599999999999999988754
No 290
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.34 E-value=1.4e-11 Score=130.05 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=42.1
Q ss_pred CCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcccccccccccccchhHHHH-HHHHhCCC
Q 043429 203 NLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGINEILN-AIVKRIPP 262 (646)
Q Consensus 203 ~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~-~I~~~ip~ 262 (646)
..|+|+|+||+|+... .+..+.+.... ...+++++||+.+.|+++|.+ .+.+++|.
T Consensus 214 ~KPvI~VlNK~Dl~~~--~~~~~~l~~~~--~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 214 SKPMVIAANKADIPDA--ENNISKLRLKY--PDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred CCcEEEEEEHHHccCh--HHHHHHHHhhC--CCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 4699999999997533 23333444333 245699999999999999998 69999975
No 291
>PRK09866 hypothetical protein; Provisional
Probab=99.33 E-value=1.2e-11 Score=137.45 Aligned_cols=110 Identities=20% Similarity=0.179 Sum_probs=81.4
Q ss_pred CeEEEEEeCCCCcc-----chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcC--CCeEEEEeccCCCCCC---
Q 043429 150 PFCLNLIDTPGHVD-----FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENN--LEIIPVLNKIDLPGAE--- 219 (646)
Q Consensus 150 ~~~l~liDTPG~~d-----f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~--~piIvViNKiDl~~~~--- 219 (646)
...+.|+||||... +...+...+..+|.+++|+|++++....+........+.+ .|+++|+||+|+.+..
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccch
Confidence 46789999999864 2334567899999999999999877766665555555555 5999999999985422
Q ss_pred chHHHHHHHHH---hCCCcccccccccccccchhHHHHHHHHh
Q 043429 220 PSRVAREIEEV---IGLDCTNAILCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 220 ~~~~~~el~~~---l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ 259 (646)
.+.+.+.+... .+.+...++++||++|.|+++|++.|..+
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 23333333322 23455679999999999999999999874
No 292
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=3.4e-12 Score=115.25 Aligned_cols=151 Identities=20% Similarity=0.243 Sum_probs=110.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.++.++|-.|+||||+.-++--..+. ....|+.....++.|+ +.++++||..|+....
T Consensus 19 ~rililgldGaGkttIlyrlqvgevv------------------ttkPtigfnve~v~yK----NLk~~vwdLggqtSir 76 (182)
T KOG0072|consen 19 MRILILGLDGAGKTTILYRLQVGEVV------------------TTKPTIGFNVETVPYK----NLKFQVWDLGGQTSIR 76 (182)
T ss_pred eEEEEeeccCCCeeEEEEEcccCccc------------------ccCCCCCcCccccccc----cccceeeEccCccccc
Confidence 48899999999999988666321111 1122667777777776 8999999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHH-HHHHH-H---cCCCeEEEEeccCCCCCCchHHHHHHHHHhCC-----Cc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLAL-E---NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL-----DC 235 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~-~~~~~-~---~~~piIvViNKiDl~~~~~~~~~~el~~~l~~-----~~ 235 (646)
..|..|+...|.+|+|||.++......... ++..+ + .+..++++.||+|.+.+... .+....+++ ..
T Consensus 77 PyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~---~E~~~~L~l~~Lk~r~ 153 (182)
T KOG0072|consen 77 PYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTR---SEVLKMLGLQKLKDRI 153 (182)
T ss_pred HHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhH---HHHHHHhChHHHhhhe
Confidence 999999999999999999998755433322 22222 1 35668999999998765432 233333332 22
Q ss_pred ccccccccccccchhHHHHHHHHhCC
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
..++.+||.+|+|+++.++|+.+.+.
T Consensus 154 ~~Iv~tSA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 154 WQIVKTSAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred eEEEeeccccccCCcHHHHHHHHHHh
Confidence 46899999999999999999987654
No 293
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.28 E-value=1.2e-11 Score=119.52 Aligned_cols=125 Identities=26% Similarity=0.375 Sum_probs=72.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEe-cCCCeEEEEEeCCCCccc
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVF-ENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~-~~~~~~l~liDTPG~~df 164 (646)
+.|.|+|+.|+|||+|..+|.+..... |+.+..-...+.. ......+.+||+|||.+.
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~---------------------T~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rl 62 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVP---------------------TVTSMENNIAYNVNNSKGKKLRLVDIPGHPRL 62 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS------------------------B---SSEEEECCGSSTCGTCECEEEETT-HCC
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCC---------------------eeccccCCceEEeecCCCCEEEEEECCCcHHH
Confidence 579999999999999999998741110 1111111111111 223567899999999998
Q ss_pred hhhHhhh---hhhccceEEEEeCCCCc-cH-hhHHHHHHHH---H---cCCCeEEEEeccCCCCCCch-HHHHHHHHHh
Q 043429 165 SYEVSRS---LAACEGALLVVDASQGV-EA-QTLANVYLAL---E---NNLEIIPVLNKIDLPGAEPS-RVAREIEEVI 231 (646)
Q Consensus 165 ~~~~~~~---l~~ad~~IlVvDa~~g~-~~-qt~~~~~~~~---~---~~~piIvViNKiDl~~~~~~-~~~~el~~~l 231 (646)
....... +..+.++|+|||++.-. +. ++.+.++..+ . ..+|+++++||.|+..+.+. .+...+++.+
T Consensus 63 r~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE~Ei 141 (181)
T PF09439_consen 63 RSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLEKEI 141 (181)
T ss_dssp CHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHHHHH
T ss_pred HHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHHHHH
Confidence 8876665 88899999999998421 11 2222222222 2 47889999999999887653 3333444433
No 294
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=5.5e-12 Score=119.24 Aligned_cols=156 Identities=13% Similarity=0.160 Sum_probs=119.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
+++++++|..|.||||++++.+.. +.|+..-.|++.....+.+.-+.+.++++.|||.|++.+
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltg-----------------eFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~ 72 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTG-----------------EFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKK 72 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcc-----------------cceecccCcceeEEeeeeeecccCcEEEEeeecccceee
Confidence 689999999999999999998751 234444446666655555543334699999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH---cCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCccccccc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILC 241 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~---~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~~v 241 (646)
......++-...++++++|.+.....+....|..... .|+||++++||.|..+..... +.+ .........++++
T Consensus 73 gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~--k~v-~~~rkknl~y~~i 149 (216)
T KOG0096|consen 73 GGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKA--KPV-SFHRKKNLQYYEI 149 (216)
T ss_pred cccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceecccccccc--ccc-eeeecccceeEEe
Confidence 9888888888899999999999999999988876543 589999999999975443111 111 1111122358999
Q ss_pred ccccccchhHHHHHHHHhC
Q 043429 242 SAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 242 SAk~g~GV~eLl~~I~~~i 260 (646)
||+++.|.+.-|-|+.+.+
T Consensus 150 Saksn~NfekPFl~LarKl 168 (216)
T KOG0096|consen 150 SAKSNYNFERPFLWLARKL 168 (216)
T ss_pred ecccccccccchHHHhhhh
Confidence 9999999999999998866
No 295
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.27 E-value=3.9e-11 Score=124.71 Aligned_cols=150 Identities=20% Similarity=0.219 Sum_probs=87.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.||+++|++|+|||||+|+|+...-....... +. .......|+...........++....+++|||||..++.
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~-----~~--~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~ 77 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPP-----DP--AEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNI 77 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCC-----Cc--cccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccc
Confidence 58999999999999999999873221110000 00 000112244333333344434455789999999987753
Q ss_pred hh---------------------Hhhhhh-------hccceEEEEeCCC-CccHhhHHHHHHHHHcCCCeEEEEeccCCC
Q 043429 166 YE---------------------VSRSLA-------ACEGALLVVDASQ-GVEAQTLANVYLALENNLEIIPVLNKIDLP 216 (646)
Q Consensus 166 ~~---------------------~~~~l~-------~ad~~IlVvDa~~-g~~~qt~~~~~~~~~~~~piIvViNKiDl~ 216 (646)
.. ..+..+ .+|+++++++++. +....++..+.... .++|+++|+||+|+.
T Consensus 78 ~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~-~~v~vi~VinK~D~l 156 (276)
T cd01850 78 NNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLS-KRVNIIPVIAKADTL 156 (276)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHh-ccCCEEEEEECCCcC
Confidence 21 011111 3788999999875 56666665555544 489999999999985
Q ss_pred CCC-chHHHHHHHHHhCCCccccccccc
Q 043429 217 GAE-PSRVAREIEEVIGLDCTNAILCSA 243 (646)
Q Consensus 217 ~~~-~~~~~~el~~~l~~~~~~i~~vSA 243 (646)
..+ .....+.+.+.+.....+++....
T Consensus 157 ~~~e~~~~k~~i~~~l~~~~i~~~~~~~ 184 (276)
T cd01850 157 TPEELKEFKQRIMEDIEEHNIKIYKFPE 184 (276)
T ss_pred CHHHHHHHHHHHHHHHHHcCCceECCCC
Confidence 422 223344444444333334565544
No 296
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.27 E-value=3e-11 Score=124.56 Aligned_cols=172 Identities=23% Similarity=0.290 Sum_probs=112.8
Q ss_pred hhhccccccCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCC
Q 043429 71 RVGQDRLLKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEP 150 (646)
Q Consensus 71 ~~~~~~~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~ 150 (646)
.+.++..-.++.+-+..|+++|-||+|||||++.+......+. . -+-+|+..+...+.. ...
T Consensus 145 ~~Ge~r~v~LELKllADVGLVG~PNaGKSTlls~vS~AkPKIa----------d-----YpFTTL~PnLGvV~~---~~~ 206 (369)
T COG0536 145 EPGEERDLRLELKLLADVGLVGLPNAGKSTLLSAVSAAKPKIA----------D-----YPFTTLVPNLGVVRV---DGG 206 (369)
T ss_pred CCCceEEEEEEEeeecccccccCCCCcHHHHHHHHhhcCCccc----------C-----CccccccCcccEEEe---cCC
Confidence 3334444445556678899999999999999999976332221 1 223455555444444 235
Q ss_pred eEEEEEeCCCCcc-------chhhHhhhhhhccceEEEEeCCCCcc---HhhHHHHHHHHH------cCCCeEEEEeccC
Q 043429 151 FCLNLIDTPGHVD-------FSYEVSRSLAACEGALLVVDASQGVE---AQTLANVYLALE------NNLEIIPVLNKID 214 (646)
Q Consensus 151 ~~l~liDTPG~~d-------f~~~~~~~l~~ad~~IlVvDa~~g~~---~qt~~~~~~~~~------~~~piIvViNKiD 214 (646)
..+.+-|.||... ......+.+..|.+.++|||.+.... .++...+...++ .+.|.++|+||+|
T Consensus 207 ~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD 286 (369)
T COG0536 207 ESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKID 286 (369)
T ss_pred CcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccC
Confidence 6788999999865 33456678888999999999986542 344333333332 4799999999999
Q ss_pred CCCCC--chHHHHHHHHHhCCCcccccccccccccchhHHHHHHHHhCCC
Q 043429 215 LPGAE--PSRVAREIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 215 l~~~~--~~~~~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
++.+. .+...+.+.+..+.. ..+++||.++.|+++|+..+.+.+..
T Consensus 287 ~~~~~e~~~~~~~~l~~~~~~~--~~~~ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 287 LPLDEEELEELKKALAEALGWE--VFYLISALTREGLDELLRALAELLEE 334 (369)
T ss_pred CCcCHHHHHHHHHHHHHhcCCC--cceeeehhcccCHHHHHHHHHHHHHH
Confidence 65442 233334444444332 12229999999999999988876643
No 297
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.26 E-value=3.3e-11 Score=123.22 Aligned_cols=151 Identities=25% Similarity=0.329 Sum_probs=105.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
+.--.+++||.|++|||||+++|.+....+ ..+ .-+|......-+.|+ +..++++|+||..
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~sev----------a~y-----~FTTl~~VPG~l~Y~----ga~IQild~Pgii 121 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEV----------ADY-----PFTTLEPVPGMLEYK----GAQIQLLDLPGII 121 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccc----------ccc-----CceecccccceEeec----CceEEEEcCcccc
Confidence 344689999999999999999996621111 112 234666666667787 8999999999975
Q ss_pred cc-------hhhHhhhhhhccceEEEEeCCCCccH---------------------------------------------
Q 043429 163 DF-------SYEVSRSLAACEGALLVVDASQGVEA--------------------------------------------- 190 (646)
Q Consensus 163 df-------~~~~~~~l~~ad~~IlVvDa~~g~~~--------------------------------------------- 190 (646)
.- ..++....+.||.+++|+|+......
T Consensus 122 ~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~ 201 (365)
T COG1163 122 EGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDE 201 (365)
T ss_pred cCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCH
Confidence 41 24567788999999999999865421
Q ss_pred hhHHHHHH----------------------HHHc---CCCeEEEEeccCCCCCCchHHHHHHHHHhCCCccccccccccc
Q 043429 191 QTLANVYL----------------------ALEN---NLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKE 245 (646)
Q Consensus 191 qt~~~~~~----------------------~~~~---~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~~vSAk~ 245 (646)
.+++.+.. ++.. -+|.++|+||+|+... +..+.+.+.. +++++||++
T Consensus 202 ~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~---e~~~~l~~~~-----~~v~isa~~ 273 (365)
T COG1163 202 DTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL---EELERLARKP-----NSVPISAKK 273 (365)
T ss_pred HHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCH---HHHHHHHhcc-----ceEEEeccc
Confidence 11111111 1111 2789999999998762 2233444333 489999999
Q ss_pred ccchhHHHHHHHHhC
Q 043429 246 GIGINEILNAIVKRI 260 (646)
Q Consensus 246 g~GV~eLl~~I~~~i 260 (646)
|.|+++|.+.|.+.+
T Consensus 274 ~~nld~L~e~i~~~L 288 (365)
T COG1163 274 GINLDELKERIWDVL 288 (365)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999998865
No 298
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.24 E-value=1.7e-10 Score=105.37 Aligned_cols=170 Identities=16% Similarity=0.152 Sum_probs=119.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|.-++|||+++++|++....+.. ....++-|.+. ..++ ..++..-.+.|.||.|..+.
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~-e~~pTiEDiY~-------------~sve-t~rgarE~l~lyDTaGlq~~ 73 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGT-ELHPTIEDIYV-------------ASVE-TDRGAREQLRLYDTAGLQGG 73 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCC-ccccchhhhee-------------Eeee-cCCChhheEEEeecccccCc
Confidence 468999999999999999999985433321 11111111111 1111 11223567889999999887
Q ss_pred hhhHh-hhhhhccceEEEEeCCCCccHhhHHHHHHHHHc-----CCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcc
Q 043429 165 SYEVS-RSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCT 236 (646)
Q Consensus 165 ~~~~~-~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~-----~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~ 236 (646)
..+.. .++..+|+.+||+|..+..+++-++.+...++. .+||++.+||+|+.+.. ..++.+.....-..
T Consensus 74 ~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkv--- 150 (198)
T KOG3883|consen 74 QQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKV--- 150 (198)
T ss_pred hhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhhe---
Confidence 55554 578889999999999999999998887777653 58999999999985322 22222223222222
Q ss_pred cccccccccccchhHHHHHHHHhCCCCCCCCCCCce
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIPPPSNTAGCPFR 272 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip~P~~~~~~pl~ 272 (646)
..++++|.....+-+.|..+..++.+|+....-|+.
T Consensus 151 kl~eVta~dR~sL~epf~~l~~rl~~pqskS~Fpl~ 186 (198)
T KOG3883|consen 151 KLWEVTAMDRPSLYEPFTYLASRLHQPQSKSTFPLS 186 (198)
T ss_pred eEEEEEeccchhhhhHHHHHHHhccCCcccccCcch
Confidence 478999999999999999999999988776655554
No 299
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.21 E-value=7.7e-11 Score=106.25 Aligned_cols=154 Identities=19% Similarity=0.204 Sum_probs=109.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
.+-.+|.++|-.++||||++..|... |-...-+ |-+.+...+.|. +.+.+|+||..|+.
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sE--------------D~~hltp----T~GFn~k~v~~~---g~f~LnvwDiGGqr 73 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSE--------------DPRHLTP----TNGFNTKKVEYD---GTFHLNVWDIGGQR 73 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccC--------------Chhhccc----cCCcceEEEeec---CcEEEEEEecCCcc
Confidence 34468999999999999999998541 1111112 444455556665 36999999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHH-HHHHHH----HcCCCeEEEEeccCCCCCCchHHHHHHHHHhCC----
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLAL----ENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL---- 233 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~-~~~~~~----~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~---- 233 (646)
..+..|..|+...|+.|+|+|+++.--+..+. .+-..+ ...+|+.++.||.|+..+... +++...+++
T Consensus 74 ~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~---eeia~klnl~~lr 150 (185)
T KOG0074|consen 74 GIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKV---EEIALKLNLAGLR 150 (185)
T ss_pred ccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcch---HHHHHhcchhhhh
Confidence 99999999999999999999988765544332 222222 247899999999997654432 233333322
Q ss_pred -CcccccccccccccchhHHHHHHHHhC
Q 043429 234 -DCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 234 -~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
....+-.+||.+++|+..-.+|+....
T Consensus 151 dRswhIq~csals~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 151 DRSWHIQECSALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred hceEEeeeCccccccCccCcchhhhcCC
Confidence 233578999999999999999987643
No 300
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.21 E-value=1.9e-10 Score=125.15 Aligned_cols=55 Identities=22% Similarity=0.307 Sum_probs=41.4
Q ss_pred CCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcccccccccccccchhH-HHHHHHHhCCC
Q 043429 203 NLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGINE-ILNAIVKRIPP 262 (646)
Q Consensus 203 ~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~~vSAk~g~GV~e-Ll~~I~~~ip~ 262 (646)
.+|+++|+||+|+...+ ....++.+. ...+++++||+.+.++++ +++.+++++|.
T Consensus 217 ~KPvI~VlNK~D~~~~~--~~l~~i~~~---~~~~vvpISA~~e~~l~~~l~~~i~~~lp~ 272 (396)
T PRK09602 217 SKPMVIAANKADLPPAE--ENIERLKEE---KYYIVVPTSAEAELALRRAAKAGLIDYIPG 272 (396)
T ss_pred CCCEEEEEEchhcccch--HHHHHHHhc---CCCcEEEEcchhhhhHHHHHHHhHHhhCCC
Confidence 48999999999975322 123344433 334689999999999999 89999999875
No 301
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=2.4e-11 Score=125.27 Aligned_cols=175 Identities=19% Similarity=0.261 Sum_probs=121.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCcccc-ccccccccccccccccceeeeeeEEEEEEEecC----------------
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKR-EMKEQFLDNMDLERERGITIKLQAARMRYVFEN---------------- 148 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~-~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~---------------- 148 (646)
.+++++|-.++|||||+.-|.. +..... +...--+-....|...|-|.......+.+...+
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQ--geLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQ--GELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred EEEEEecCcccCcceeeeeeec--ccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 4799999999999999987755 222211 111111223334555566655444444443211
Q ss_pred -CCeEEEEEeCCCCccchhhHhhhhhh--ccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC-chHHH
Q 043429 149 -EPFCLNLIDTPGHVDFSYEVSRSLAA--CEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE-PSRVA 224 (646)
Q Consensus 149 -~~~~l~liDTPG~~df~~~~~~~l~~--ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~-~~~~~ 224 (646)
....+++||.+||.+|...+...+.. .|.++|||+|..|+...|.+++-.+...++|++++++|+|+.... .+...
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~~~~~tv 325 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQGLKKTV 325 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccchhHHHHH
Confidence 23568999999999988777666654 688999999999999999999999999999999999999997643 35556
Q ss_pred HHHHHHhC---CC-----------------------cccccccccccccchhHHHHHHHHhCCCC
Q 043429 225 REIEEVIG---LD-----------------------CTNAILCSAKEGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 225 ~el~~~l~---~~-----------------------~~~i~~vSAk~g~GV~eLl~~I~~~ip~P 263 (646)
+++.+.+. +. ..|+|.+|+.+|+|++-|.. +...+++.
T Consensus 326 ~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~-fLn~Lsp~ 389 (591)
T KOG1143|consen 326 KDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT-FLNCLSPA 389 (591)
T ss_pred HHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH-HHhhcCCc
Confidence 66665542 21 12799999999999965544 44555443
No 302
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.20 E-value=1.1e-10 Score=117.32 Aligned_cols=162 Identities=18% Similarity=0.229 Sum_probs=107.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH 161 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~ 161 (646)
....-|+.|+|..|+|||||+|+|+...... + ..-|++...... .+. ......++||||||.
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~--------------v-~~vg~~t~~~~~--~~~-~~~~~~l~lwDtPG~ 97 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKE--------------V-SKVGVGTDITTR--LRL-SYDGENLVLWDTPGL 97 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCce--------------e-eecccCCCchhh--HHh-hccccceEEecCCCc
Confidence 3445699999999999999999998521110 0 001111111111 111 112478899999999
Q ss_pred cc-------chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH--cCCCeEEEEeccCCCCC--C-------ch-H
Q 043429 162 VD-------FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--NNLEIIPVLNKIDLPGA--E-------PS-R 222 (646)
Q Consensus 162 ~d-------f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~--~~~piIvViNKiDl~~~--~-------~~-~ 222 (646)
+| +......++...|.+++++|+.++.-.-+...|..... .+.++++++|.+|.... + +. .
T Consensus 98 gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a 177 (296)
T COG3596 98 GDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPA 177 (296)
T ss_pred ccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHH
Confidence 87 44556778889999999999999876666666665544 35789999999996321 1 11 1
Q ss_pred H-------HHHHHHHhCCCcccccccccccccchhHHHHHHHHhCCC
Q 043429 223 V-------AREIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 223 ~-------~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
. .+.+.+.+. +-.|++.+|+..+.|++++..++++.+|.
T Consensus 178 ~~qfi~~k~~~~~~~~q-~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 178 IKQFIEEKAEALGRLFQ-EVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HHHHHHHHHHHHHHHHh-hcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 1 112222222 23478899999999999999999999984
No 303
>PRK13768 GTPase; Provisional
Probab=99.17 E-value=1.2e-10 Score=119.68 Aligned_cols=112 Identities=29% Similarity=0.359 Sum_probs=75.7
Q ss_pred eEEEEEeCCCCccc---hhhHh---hhhhh--ccceEEEEeCCCCccHhhHHHHHHH-----HHcCCCeEEEEeccCCCC
Q 043429 151 FCLNLIDTPGHVDF---SYEVS---RSLAA--CEGALLVVDASQGVEAQTLANVYLA-----LENNLEIIPVLNKIDLPG 217 (646)
Q Consensus 151 ~~l~liDTPG~~df---~~~~~---~~l~~--ad~~IlVvDa~~g~~~qt~~~~~~~-----~~~~~piIvViNKiDl~~ 217 (646)
..+.+|||||+.++ ..... +.+.. ++++++|+|++.+.+..+....... ...++|+++|+||+|+..
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcC
Confidence 46889999998763 22332 23333 7899999999887666554332221 256899999999999865
Q ss_pred CCc-hHHHHHHHH---------------------------HhCCCcccccccccccccchhHHHHHHHHhCCCC
Q 043429 218 AEP-SRVAREIEE---------------------------VIGLDCTNAILCSAKEGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 218 ~~~-~~~~~el~~---------------------------~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P 263 (646)
... +...+.+.+ .++ ...+++++||+++.|+++|+++|.+.++.-
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~-~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~ 249 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETG-LPVRVIPVSAKTGEGFDELYAAIQEVFCGG 249 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHC-CCCcEEEEECCCCcCHHHHHHHHHHHcCCC
Confidence 432 222221111 112 123689999999999999999999998653
No 304
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.14 E-value=1.2e-10 Score=123.36 Aligned_cols=106 Identities=26% Similarity=0.250 Sum_probs=76.4
Q ss_pred CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC-chHHHHHH
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE-PSRVAREI 227 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~-~~~~~~el 227 (646)
.++.+.|+||+|...-... ....||.+++|++...|...|....-. ....-++|+||+|+.... ......++
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~gi----~E~aDIiVVNKaDl~~~~~a~~~~~el 219 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKGI----MELADLIVINKADGDNKTAARRAAAEY 219 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhhh----hhhhheEEeehhcccchhHHHHHHHHH
Confidence 4688999999998843222 466799999998866666655543211 122238999999987543 34455667
Q ss_pred HHHhCCC-------cccccccccccccchhHHHHHHHHhCC
Q 043429 228 EEVIGLD-------CTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 228 ~~~l~~~-------~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
...+.+. ..|++.+||++|.|+++|++.|.++++
T Consensus 220 ~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 220 RSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6666541 147999999999999999999998875
No 305
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.13 E-value=8.5e-10 Score=111.19 Aligned_cols=158 Identities=20% Similarity=0.314 Sum_probs=95.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
||+++|..++||||....+......- | -..-|.|++.....+.. .....+++||+||+.+|..
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~----------d----T~~L~~T~~ve~~~v~~---~~~~~l~iwD~pGq~~~~~ 63 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPR----------D----TLRLEPTIDVEKSHVRF---LSFLPLNIWDCPGQDDFME 63 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GG----------G----GGG-----SEEEEEEEC---TTSCEEEEEEE-SSCSTTH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCch----------h----ccccCCcCCceEEEEec---CCCcEEEEEEcCCcccccc
Confidence 68999999999999998886521110 0 11224566655444332 2467999999999988765
Q ss_pred h-----HhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH------cCCCeEEEEeccCCCCCCc-----hHHHHHHHHH
Q 043429 167 E-----VSRSLAACEGALLVVDASQGVEAQTLANVYLALE------NNLEIIPVLNKIDLPGAEP-----SRVAREIEEV 230 (646)
Q Consensus 167 ~-----~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~------~~~piIvViNKiDl~~~~~-----~~~~~el~~~ 230 (646)
. ....++.++++|+|+|+....-...+..+...++ -++.+.++++|+|+...+. ....+.+.+.
T Consensus 64 ~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~ 143 (232)
T PF04670_consen 64 NYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDE 143 (232)
T ss_dssp TTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHH
Confidence 4 3567899999999999996555555555544333 2677999999999865432 1222233333
Q ss_pred h---CCCcccccccccccccchhHHHHHHHHhCCC
Q 043429 231 I---GLDCTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 231 l---~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+ +.....++.+|-.. +.+-+.+..|+..+-|
T Consensus 144 ~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 144 LEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp HHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTST
T ss_pred hhhccccceEEEeccCcC-cHHHHHHHHHHHHHcc
Confidence 2 22223567777776 5888888888876543
No 306
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=3.6e-10 Score=109.25 Aligned_cols=151 Identities=22% Similarity=0.257 Sum_probs=99.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
+.|.++|..|+|||+|.-+|...+... .-+++..+.....+. .....|+|.|||.+..
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~------------------TvtSiepn~a~~r~g----s~~~~LVD~PGH~rlR 96 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRG------------------TVTSIEPNEATYRLG----SENVTLVDLPGHSRLR 96 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccC------------------eeeeeccceeeEeec----CcceEEEeCCCcHHHH
Confidence 579999999999999998887631110 011223333333333 3447899999999988
Q ss_pred hhHhhhhh---hccceEEEEeCCCCc-cHhhHHHHH-HH------HHcCCCeEEEEeccCCCCCCchHHHH-HHHHHhC-
Q 043429 166 YEVSRSLA---ACEGALLVVDASQGV-EAQTLANVY-LA------LENNLEIIPVLNKIDLPGAEPSRVAR-EIEEVIG- 232 (646)
Q Consensus 166 ~~~~~~l~---~ad~~IlVvDa~~g~-~~qt~~~~~-~~------~~~~~piIvViNKiDl~~~~~~~~~~-el~~~l~- 232 (646)
.....++. .+-++++|||+..-. ...+...+. .. ..+..|+++++||.|+..+.+.+..+ +++..++
T Consensus 97 ~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~ 176 (238)
T KOG0090|consen 97 RKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHK 176 (238)
T ss_pred HHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHH
Confidence 87777776 688999999987532 223333222 22 13467899999999998887655433 2322221
Q ss_pred ----------CC-------------------------cccccccccccccchhHHHHHHHHh
Q 043429 233 ----------LD-------------------------CTNAILCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 233 ----------~~-------------------------~~~i~~vSAk~g~GV~eLl~~I~~~ 259 (646)
.. ...+.++|+++| +++++-+||.+.
T Consensus 177 lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 177 LRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred HHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 00 013678999999 899999998765
No 307
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=2.7e-10 Score=105.68 Aligned_cols=151 Identities=17% Similarity=0.149 Sum_probs=102.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
-++.++|--|+|||||++.|-... ++.+. .|.......+... +.+++-+|..||..-.
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDr------------l~qhv------PTlHPTSE~l~Ig----~m~ftt~DLGGH~qAr 78 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDDR------------LGQHV------PTLHPTSEELSIG----GMTFTTFDLGGHLQAR 78 (193)
T ss_pred ceEEEEeecCCchhhHHHHHcccc------------ccccC------CCcCCChHHheec----CceEEEEccccHHHHH
Confidence 589999999999999998874411 11111 1333333334443 7889999999999989
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHH-----HcCCCeEEEEeccCCCCCCchHHHHHHH---HHhCC----
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-----ENNLEIIPVLNKIDLPGAEPSRVAREIE---EVIGL---- 233 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~-----~~~~piIvViNKiDl~~~~~~~~~~el~---~~l~~---- 233 (646)
..+..++..||+++++||+.+..-++..+.-..+. -.++|+++.+||+|.+.+-.++...... +..+.
T Consensus 79 r~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v 158 (193)
T KOG0077|consen 79 RVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKV 158 (193)
T ss_pred HHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999876665543332222 2589999999999999877544332221 11111
Q ss_pred -------CcccccccccccccchhHHHHHHHH
Q 043429 234 -------DCTNAILCSAKEGIGINEILNAIVK 258 (646)
Q Consensus 234 -------~~~~i~~vSAk~g~GV~eLl~~I~~ 258 (646)
.+..++.||...+.|.-+-+.|+..
T Consensus 159 ~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 159 NLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred cccCCCCCeEEEEEEEEEccCccceeeeehhh
Confidence 1124677777777776666665543
No 308
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.08 E-value=5.9e-10 Score=111.08 Aligned_cols=170 Identities=16% Similarity=0.189 Sum_probs=96.7
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccc-ccccc---ccccccccccceee-eeeEEEEE----E------
Q 043429 80 VPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE-MKEQF---LDNMDLERERGITI-KLQAARMR----Y------ 144 (646)
Q Consensus 80 ~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~-~~~~~---~d~~~~e~e~giTi-~~~~~~~~----~------ 144 (646)
.+...+++|+++|+.|+|||||+++++...+...+-. ....+ .|..... ..|..+ .......- +
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~-~~~~~~~~l~~gcic~~~~~~~~~~l 95 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLR-KYGAPAIQINTGKECHLDAHMVAHAL 95 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHH-HcCCcEEEEcCCCcccCChHHHHHHH
Confidence 4456789999999999999999999998643211100 00111 1221111 112110 00000000 0
Q ss_pred -EecCCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC---c
Q 043429 145 -VFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE---P 220 (646)
Q Consensus 145 -~~~~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~---~ 220 (646)
.....+..+.|++|.|...... .+....+..+.|+|+.++...... .....+.|.++++||+|+.+.. .
T Consensus 96 ~~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~~----~~~~~~~a~iiv~NK~Dl~~~~~~~~ 168 (207)
T TIGR00073 96 EDLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPLK----YPGMFKEADLIVINKADLAEAVGFDV 168 (207)
T ss_pred HHhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhhh----hHhHHhhCCEEEEEHHHccccchhhH
Confidence 0001245778999999321111 111234556789999876543221 1222457889999999997542 2
Q ss_pred hHHHHHHHHHhCCCcccccccccccccchhHHHHHHHHh
Q 043429 221 SRVAREIEEVIGLDCTNAILCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 221 ~~~~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ 259 (646)
.+..+.+++.. +..+++++||++|.|++++++++.++
T Consensus 169 ~~~~~~l~~~~--~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 169 EKMKADAKKIN--PEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHHHhC--CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 33334444332 34679999999999999999999875
No 309
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.04 E-value=3.6e-10 Score=112.79 Aligned_cols=176 Identities=20% Similarity=0.317 Sum_probs=108.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCcccc-c------------------c-----ccccccccccccccceeeeeeEE
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKR-E------------------M-----KEQFLDNMDLERERGITIKLQAA 140 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~-~------------------~-----~~~~~d~~~~e~e~giTi~~~~~ 140 (646)
..-|.++|..|+||||++.||......-..+ . . -..++..+...+..||+...+..
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNLF 98 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNLF 98 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHHHH
Confidence 4578999999999999999998743221110 0 0 13456667777788887655433
Q ss_pred EEEEE-------ecCCCeEEEEEeCCCCcc-ch-----hhHhhhhhh--ccceEEEEeCCCCccHhhH-HHH----HHHH
Q 043429 141 RMRYV-------FENEPFCLNLIDTPGHVD-FS-----YEVSRSLAA--CEGALLVVDASQGVEAQTL-ANV----YLAL 200 (646)
Q Consensus 141 ~~~~~-------~~~~~~~l~liDTPG~~d-f~-----~~~~~~l~~--ad~~IlVvDa~~g~~~qt~-~~~----~~~~ 200 (646)
...+. .....+.+.||||||+.+ |. ......++. --++++|+|....-+..|. .+. ....
T Consensus 99 ~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSily 178 (366)
T KOG1532|consen 99 ATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILY 178 (366)
T ss_pred HHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHH
Confidence 22221 112357788999999975 22 122223333 2357888997665444332 222 2334
Q ss_pred HcCCCeEEEEeccCCCCCCc-hHH---HHHHHHHhCC---------------------CcccccccccccccchhHHHHH
Q 043429 201 ENNLEIIPVLNKIDLPGAEP-SRV---AREIEEVIGL---------------------DCTNAILCSAKEGIGINEILNA 255 (646)
Q Consensus 201 ~~~~piIvViNKiDl~~~~~-~~~---~~el~~~l~~---------------------~~~~i~~vSAk~g~GV~eLl~~ 255 (646)
+..+|.|+|.||+|+.+..+ .+. .+.+++.+.- .....+.+||.+|.|.+++|.+
T Consensus 179 ktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~a 258 (366)
T KOG1532|consen 179 KTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTA 258 (366)
T ss_pred hccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHH
Confidence 56999999999999987643 111 2222222220 0114688999999999999999
Q ss_pred HHHhC
Q 043429 256 IVKRI 260 (646)
Q Consensus 256 I~~~i 260 (646)
+.+.+
T Consensus 259 v~~~v 263 (366)
T KOG1532|consen 259 VDESV 263 (366)
T ss_pred HHHHH
Confidence 87654
No 310
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.04 E-value=1.8e-09 Score=106.97 Aligned_cols=100 Identities=20% Similarity=0.277 Sum_probs=66.8
Q ss_pred CeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCe--EEEEeccCCCC---CCchHHH
Q 043429 150 PFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEI--IPVLNKIDLPG---AEPSRVA 224 (646)
Q Consensus 150 ~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~pi--IvViNKiDl~~---~~~~~~~ 224 (646)
.....+|+|.|..- ....... .+|.+|.|+|+.++.+.+.. + ..++.. ++++||+|+.+ ++.+...
T Consensus 91 ~~D~iiIEt~G~~l-~~~~~~~--l~~~~i~vvD~~~~~~~~~~--~----~~qi~~ad~~~~~k~d~~~~~~~~~~~~~ 161 (199)
T TIGR00101 91 PLEMVFIESGGDNL-SATFSPE--LADLTIFVIDVAAGDKIPRK--G----GPGITRSDLLVINKIDLAPMVGADLGVME 161 (199)
T ss_pred CCCEEEEECCCCCc-ccccchh--hhCcEEEEEEcchhhhhhhh--h----HhHhhhccEEEEEhhhccccccccHHHHH
Confidence 45677899999421 1111122 26889999999987764321 1 123334 89999999975 3333444
Q ss_pred HHHHHHhCCCcccccccccccccchhHHHHHHHHhC
Q 043429 225 REIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 225 ~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
++++.. + +..+++++||++|+|+++++++|.++.
T Consensus 162 ~~~~~~-~-~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 162 RDAKKM-R-GEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHh-C-CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455444 2 346799999999999999999998764
No 311
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.04 E-value=5.4e-10 Score=102.36 Aligned_cols=158 Identities=16% Similarity=0.219 Sum_probs=112.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|++..|||||+-...+. ..+.| +--|.+.+.....+...+....+.+||..|+++|.
T Consensus 21 lkv~llGD~qiGKTs~mvkYV~~---------------~~de~--~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~ 83 (205)
T KOG1673|consen 21 LKVGLLGDAQIGKTSLMVKYVQN---------------EYDEE--YTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFI 83 (205)
T ss_pred EEEEeecccccCceeeehhhhcc---------------hhHHH--HHHHhCccceeeEEEecceEEEEEEEecCCcHhhh
Confidence 58999999999999999777652 12211 11233333333333344557888999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-cCCC--eEEEEeccCCCC----CCchHHHHHHHHHhCCCcccc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-NNLE--IIPVLNKIDLPG----AEPSRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-~~~p--iIvViNKiDl~~----~~~~~~~~el~~~l~~~~~~i 238 (646)
....-+...+-++++++|.+.+.+...+..|+...+ .|.. -|+|++|-|+-- ...+....+.+.....-.++.
T Consensus 84 n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL 163 (205)
T KOG1673|consen 84 NMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASL 163 (205)
T ss_pred ccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcE
Confidence 988888888889999999999999999988876554 3322 367899998532 222333333333323333468
Q ss_pred cccccccccchhHHHHHHHHhC
Q 043429 239 ILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++|+....||..+|..+...+
T Consensus 164 ~F~Sts~sINv~KIFK~vlAkl 185 (205)
T KOG1673|consen 164 FFCSTSHSINVQKIFKIVLAKL 185 (205)
T ss_pred EEeeccccccHHHHHHHHHHHH
Confidence 9999999999999999887754
No 312
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.00 E-value=1.2e-10 Score=118.36 Aligned_cols=108 Identities=29% Similarity=0.388 Sum_probs=59.6
Q ss_pred EEEEEeCCCCccchhhHhh------hhh--hccceEEEEeCCCCccHhhH-HHHHH----HHHcCCCeEEEEeccCCCCC
Q 043429 152 CLNLIDTPGHVDFSYEVSR------SLA--ACEGALLVVDASQGVEAQTL-ANVYL----ALENNLEIIPVLNKIDLPGA 218 (646)
Q Consensus 152 ~l~liDTPG~~df~~~~~~------~l~--~ad~~IlVvDa~~g~~~qt~-~~~~~----~~~~~~piIvViNKiDl~~~ 218 (646)
.+.|+|||||.++...+.. .+. ..-++++++|+..-.+.... ..+.. ..+.++|.+.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 6789999999885543322 222 23468999998865443332 33322 34469999999999999762
Q ss_pred Cc---------------------hHHHHHHHHHhC-CCcc-cccccccccccchhHHHHHHHHh
Q 043429 219 EP---------------------SRVAREIEEVIG-LDCT-NAILCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 219 ~~---------------------~~~~~el~~~l~-~~~~-~i~~vSAk~g~GV~eLl~~I~~~ 259 (646)
.. ....+++.+.+. +... .++++|+++++|+++|+..|-+.
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 21 111122333332 2223 68999999999999999988653
No 313
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.98 E-value=1.1e-09 Score=97.22 Aligned_cols=138 Identities=22% Similarity=0.206 Sum_probs=90.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.++++||..|+|||||.++|-+..--. .+.+ .++|.. .. .|||||-.--.
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~ly----------------------kKTQ--Ave~~d---~~---~IDTPGEy~~~ 51 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLY----------------------KKTQ--AVEFND---KG---DIDTPGEYFEH 51 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhh----------------------cccc--eeeccC---cc---ccCCchhhhhh
Confidence 478999999999999999996521100 0111 133431 11 69999953222
Q ss_pred hh----HhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCC-CCCchHHHHHHHHHhCCCcccccc
Q 043429 166 YE----VSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP-GAEPSRVAREIEEVIGLDCTNAIL 240 (646)
Q Consensus 166 ~~----~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~-~~~~~~~~~el~~~l~~~~~~i~~ 240 (646)
.. .......+|.+++|-.++++.+.-.- ...--...|+|-|++|+|++ +++.+.+.+.+.+ .| ..++|.
T Consensus 52 ~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p---~f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~e-aG--a~~IF~ 125 (148)
T COG4917 52 PRWYHALITTLQDADVIIYVHAANDPESRFPP---GFLDIGVKKVIGVVTKADLAEDADISLVKRWLRE-AG--AEPIFE 125 (148)
T ss_pred hHHHHHHHHHhhccceeeeeecccCccccCCc---ccccccccceEEEEecccccchHhHHHHHHHHHH-cC--CcceEE
Confidence 22 33455678899999988886442111 01112356799999999998 5555555444443 35 457999
Q ss_pred cccccccchhHHHHHHHHh
Q 043429 241 CSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 241 vSAk~g~GV~eLl~~I~~~ 259 (646)
+|+.+..|+++|++.+...
T Consensus 126 ~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 126 TSAVDNQGVEELVDYLASL 144 (148)
T ss_pred EeccCcccHHHHHHHHHhh
Confidence 9999999999999998653
No 314
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.95 E-value=1.2e-08 Score=108.55 Aligned_cols=173 Identities=17% Similarity=0.217 Sum_probs=111.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcC--Cccccccccccccccccccccc---eeeeeeE---EEEEEEe-cCCCeEEEEE
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTG--TVQKREMKEQFLDNMDLERERG---ITIKLQA---ARMRYVF-ENEPFCLNLI 156 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~--~i~~~~~~~~~~d~~~~e~e~g---iTi~~~~---~~~~~~~-~~~~~~l~li 156 (646)
.-|+++|+.++|||||+++|.+..- .+..........|.++ ....| +|.+..+ ..++... ++-...+.|+
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELp-qs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELP-QSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccC-cCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 4799999999999999999998521 1111111222233333 33556 5666555 3344432 3445789999
Q ss_pred eCCCCccch-------hh----------------------Hhhhhh-hccceEEEE-eCC------CCccHhhHHHHHHH
Q 043429 157 DTPGHVDFS-------YE----------------------VSRSLA-ACEGALLVV-DAS------QGVEAQTLANVYLA 199 (646)
Q Consensus 157 DTPG~~df~-------~~----------------------~~~~l~-~ad~~IlVv-Da~------~g~~~qt~~~~~~~ 199 (646)
||+|+.+-. .. +...+. .+|.+|+|. |.+ +.......+.....
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 999986511 01 344666 799999998 876 33334445556666
Q ss_pred HHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcccccccccc--cccchhHHHHHHHHhCCC
Q 043429 200 LENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAK--EGIGINEILNAIVKRIPP 262 (646)
Q Consensus 200 ~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~~vSAk--~g~GV~eLl~~I~~~ip~ 262 (646)
.+.++|+++|+||+|-.........+++.+.++.+ ++++|+. +-..|..+|+.++-.+|-
T Consensus 177 k~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vp---vl~v~c~~l~~~DI~~il~~vL~EFPv 238 (492)
T TIGR02836 177 KELNKPFIILLNSTHPYHPETEALRQELEEKYDVP---VLAMDVESMRESDILSVLEEVLYEFPI 238 (492)
T ss_pred HhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCc---eEEEEHHHcCHHHHHHHHHHHHhcCCc
Confidence 77899999999999943333445556777777754 6666664 455777888877766654
No 315
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.95 E-value=7.3e-11 Score=111.22 Aligned_cols=158 Identities=18% Similarity=0.249 Sum_probs=117.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeE--EEEEEEecCCCeEEEEEeCCC
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQA--ARMRYVFENEPFCLNLIDTPG 160 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~--~~~~~~~~~~~~~l~liDTPG 160 (646)
+...++.|+|.-++|||+++.+.+.+..... ...||...+ ..+.|. +...++++|||..|
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~-----------------yRAtIgvdfalkVl~wd-d~t~vRlqLwdIag 84 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYH-----------------YRATIGVDFALKVLQWD-DKTIVRLQLWDIAG 84 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHH-----------------HHHHHhHHHHHHHhccC-hHHHHHHHHhcchh
Confidence 3457899999999999999999987432111 111333222 123332 22356789999999
Q ss_pred CccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc------C--CCeEEEEeccCCCCCCch---HHHHHHHH
Q 043429 161 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN------N--LEIIPVLNKIDLPGAEPS---RVAREIEE 229 (646)
Q Consensus 161 ~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~------~--~piIvViNKiDl~~~~~~---~~~~el~~ 229 (646)
+++|..+..-+++.+.++.+|+|.+...++.....|...+.. + +|+++..||||....... +..++..+
T Consensus 85 Qerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~k 164 (229)
T KOG4423|consen 85 QERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKK 164 (229)
T ss_pred hhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHh
Confidence 999999999999999999999999999999999999887763 3 458899999998654332 33444444
Q ss_pred HhCCCcccccccccccccchhHHHHHHHHhC
Q 043429 230 VIGLDCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 230 ~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
..|+. ..+++|+|.+.+++|..+.+++.+
T Consensus 165 engf~--gwtets~Kenkni~Ea~r~lVe~~ 193 (229)
T KOG4423|consen 165 ENGFE--GWTETSAKENKNIPEAQRELVEKI 193 (229)
T ss_pred ccCcc--ceeeeccccccChhHHHHHHHHHH
Confidence 45554 489999999999999999998865
No 316
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.94 E-value=4e-09 Score=115.23 Aligned_cols=160 Identities=19% Similarity=0.189 Sum_probs=110.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|+.|+|||||+-+|+.... .+..+ .+-.-|+|-++.. .......++||+...+-.
T Consensus 10 VRIvliGD~G~GKtSLImSL~~eef-----------~~~VP-~rl~~i~IPadvt-------Pe~vpt~ivD~ss~~~~~ 70 (625)
T KOG1707|consen 10 VRIVLIGDEGVGKTSLIMSLLEEEF-----------VDAVP-RRLPRILIPADVT-------PENVPTSIVDTSSDSDDR 70 (625)
T ss_pred eEEEEECCCCccHHHHHHHHHhhhc-----------ccccc-ccCCccccCCccC-------cCcCceEEEecccccchh
Confidence 4899999999999999999988432 12211 2233345543322 235568899999777766
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhH-HHHHHHHH------cCCCeEEEEeccCCCCCCch---HHHHHHHHHhCCCc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE------NNLEIIPVLNKIDLPGAEPS---RVAREIEEVIGLDC 235 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~-~~~~~~~~------~~~piIvViNKiDl~~~~~~---~~~~el~~~l~~~~ 235 (646)
..+...++.||++.++++.++..+..-+ ..|.-.++ .++|+|+|+||+|....... ....-|-..+. ..
T Consensus 71 ~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~-Ei 149 (625)
T KOG1707|consen 71 LCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFA-EI 149 (625)
T ss_pred HHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhH-HH
Confidence 6778899999999999998886555444 34544444 47999999999998654332 11111222121 12
Q ss_pred ccccccccccccchhHHHHHHHHhCCCCCC
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRIPPPSN 265 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~ip~P~~ 265 (646)
+..++|||++-.++.++|....+.+-.|..
T Consensus 150 EtciecSA~~~~n~~e~fYyaqKaVihPt~ 179 (625)
T KOG1707|consen 150 ETCIECSALTLANVSELFYYAQKAVIHPTS 179 (625)
T ss_pred HHHHhhhhhhhhhhHhhhhhhhheeeccCc
Confidence 357999999999999999998888776653
No 317
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.93 E-value=4.5e-09 Score=110.79 Aligned_cols=105 Identities=23% Similarity=0.213 Sum_probs=67.9
Q ss_pred CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHH-HHH-
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRV-ARE- 226 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~-~~e- 226 (646)
.++.+.|+||||...-. ...+..+|.++++.+...+...+. ....+ .++|.++|+||+|+........ ...
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~el~~---~~~~l-~~~~~ivv~NK~Dl~~~~~~~~~~~~~ 197 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDDLQG---IKAGL-MEIADIYVVNKADGEGATNVTIARLML 197 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHHHHH---HHHHH-hhhccEEEEEcccccchhHHHHHHHHH
Confidence 47889999999975322 235667888888866554433322 22222 4788899999999976543211 111
Q ss_pred ---HHHHhC---CCcccccccccccccchhHHHHHHHHhC
Q 043429 227 ---IEEVIG---LDCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 227 ---l~~~l~---~~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+..... ....+++++||++|.|+++++++|.+..
T Consensus 198 ~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 198 ALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 111111 0112589999999999999999998764
No 318
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.92 E-value=1.1e-09 Score=110.14 Aligned_cols=167 Identities=26% Similarity=0.340 Sum_probs=97.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCc---------cc--ccc-ccccccccc---cccccceeeeeeEEEEEE----
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTV---------QK--REM-KEQFLDNMD---LERERGITIKLQAARMRY---- 144 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i---------~~--~~~-~~~~~d~~~---~e~e~giTi~~~~~~~~~---- 144 (646)
+-..|+|.|++|+|||||+++|...-..- .. ... +.-.-|... .....++-+.+....-..
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 34689999999999999999998732100 00 001 111112111 111223222211110000
Q ss_pred --------EecCCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCC
Q 043429 145 --------VFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP 216 (646)
Q Consensus 145 --------~~~~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~ 216 (646)
-.+.-+|.+.|+.|-|...-..+ ....||.+++|+-...|.+.|.++.-.+.+.. ++|+||+|++
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD----i~vVNKaD~~ 180 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLGDEIQAIKAGIMEIAD----IFVVNKADRP 180 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S----EEEEE--SHH
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCccHHHHHhhhhhhhcc----EEEEeCCChH
Confidence 00113688999999987653222 35678999999999999999988766666655 9999999965
Q ss_pred CCCchHHHHHHHHHhCCC-------cccccccccccccchhHHHHHHHHh
Q 043429 217 GAEPSRVAREIEEVIGLD-------CTNAILCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 217 ~~~~~~~~~el~~~l~~~-------~~~i~~vSAk~g~GV~eLl~~I~~~ 259 (646)
.++ ....+++..+.+. ..|++.+||.+|.|+++|+++|.++
T Consensus 181 gA~--~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 181 GAD--RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp HHH--HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 543 3344555444221 1379999999999999999999774
No 319
>PTZ00258 GTP-binding protein; Provisional
Probab=98.90 E-value=1.7e-08 Score=108.96 Aligned_cols=86 Identities=26% Similarity=0.212 Sum_probs=60.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecC-------------CCe
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFEN-------------EPF 151 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~-------------~~~ 151 (646)
-.+|+|+|.+|+|||||+|+|..... .....+++|++.....+.+.... ...
T Consensus 21 ~~kvgIVG~PNvGKSTLfnaLt~~~~---------------~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~a 85 (390)
T PTZ00258 21 NLKMGIVGLPNVGKSTTFNALCKQQV---------------PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPA 85 (390)
T ss_pred CcEEEEECCCCCChHHHHHHHhcCcc---------------cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCC
Confidence 35899999999999999999965211 12334566777766665544110 134
Q ss_pred EEEEEeCCCCcc-------chhhHhhhhhhccceEEEEeCC
Q 043429 152 CLNLIDTPGHVD-------FSYEVSRSLAACEGALLVVDAS 185 (646)
Q Consensus 152 ~l~liDTPG~~d-------f~~~~~~~l~~ad~~IlVvDa~ 185 (646)
.+.++||||... ........++.||++++|+|+.
T Consensus 86 qi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 86 QLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 589999999764 2224456778899999999985
No 320
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.89 E-value=1.8e-08 Score=103.18 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=68.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
...+|+++|.+|+|||||+|+|++..... .....+.|.........+. +..+++|||||..+
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~--------------v~~~~~~T~~~~~~~~~~~----g~~i~vIDTPGl~~ 91 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAA--------------TSAFQSETLRVREVSGTVD----GFKLNIIDTPGLLE 91 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcc--------------cCCCCCceEEEEEEEEEEC----CeEEEEEECCCcCc
Confidence 44799999999999999999998742211 1111223444444333333 68899999999987
Q ss_pred chh---h-------Hhhhhh--hccceEEEEeCCC-CccHhhHHHHHHHHH-cC----CCeEEEEeccCCC
Q 043429 164 FSY---E-------VSRSLA--ACEGALLVVDASQ-GVEAQTLANVYLALE-NN----LEIIPVLNKIDLP 216 (646)
Q Consensus 164 f~~---~-------~~~~l~--~ad~~IlVvDa~~-g~~~qt~~~~~~~~~-~~----~piIvViNKiDl~ 216 (646)
... . +.+++. ..|++++|...+. .....+...+....+ .+ .++++|+||+|..
T Consensus 92 ~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 92 SVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred chhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 631 1 223333 3566777755543 233333333322222 12 4699999999964
No 321
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.86 E-value=6.6e-09 Score=111.48 Aligned_cols=165 Identities=22% Similarity=0.306 Sum_probs=99.5
Q ss_pred cccCC--CCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEE
Q 043429 77 LLKVP--ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLN 154 (646)
Q Consensus 77 ~~~~~--~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~ 154 (646)
+..+| ....+.++++|-+|+|||||++.+...... +..-.-+|-..-...+.|+ -..++
T Consensus 158 l~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradve---------------vqpYaFTTksL~vGH~dyk----YlrwQ 218 (620)
T KOG1490|consen 158 LSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDE---------------VQPYAFTTKLLLVGHLDYK----YLRWQ 218 (620)
T ss_pred HhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccc---------------cCCcccccchhhhhhhhhh----eeeee
Confidence 44444 346799999999999999998877542111 1112223333333334444 46789
Q ss_pred EEeCCCCccchh------hHhh--hhhh-ccceEEEEeCCC--CccHhhHHHHHHHHH---cCCCeEEEEeccCCCC-CC
Q 043429 155 LIDTPGHVDFSY------EVSR--SLAA-CEGALLVVDASQ--GVEAQTLANVYLALE---NNLEIIPVLNKIDLPG-AE 219 (646)
Q Consensus 155 liDTPG~~df~~------~~~~--~l~~-ad~~IlVvDa~~--g~~~qt~~~~~~~~~---~~~piIvViNKiDl~~-~~ 219 (646)
++||||.-|--. ++.. +++. -.+++++.|.+. |-+......++..++ .|.|.|+|+||+|+.. .+
T Consensus 219 ViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~ed 298 (620)
T KOG1490|consen 219 VIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPED 298 (620)
T ss_pred ecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccc
Confidence 999999866221 2211 2211 125899999885 434333333333333 5999999999999754 33
Q ss_pred chHHHHHHH-HHhCCCcccccccccccccchhHHHHHHHHhC
Q 043429 220 PSRVAREIE-EVIGLDCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 220 ~~~~~~el~-~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
..+..+++. ...+....+++.+|+.+.+||.++....++.+
T Consensus 299 L~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~L 340 (620)
T KOG1490|consen 299 LDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEAL 340 (620)
T ss_pred cCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHH
Confidence 333333333 22333335699999999999988777666654
No 322
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.80 E-value=4.4e-08 Score=99.40 Aligned_cols=135 Identities=19% Similarity=0.242 Sum_probs=81.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhc------CCcccccc--------c----------cccccccccc------cc--c
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMT------GTVQKREM--------K----------EQFLDNMDLE------RE--R 131 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~------~~i~~~~~--------~----------~~~~d~~~~e------~e--~ 131 (646)
..+.++++|+.|+||||++++|++.. |.+++... . ..+.+..++. .+ .
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 34689999999999999999998752 22211100 0 0000100000 00 0
Q ss_pred --ceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc-------------hhhHhhhhhh-ccceEEEEeCCCCccHhh-HH
Q 043429 132 --GITIKLQAARMRYVFENEPFCLNLIDTPGHVDF-------------SYEVSRSLAA-CEGALLVVDASQGVEAQT-LA 194 (646)
Q Consensus 132 --giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df-------------~~~~~~~l~~-ad~~IlVvDa~~g~~~qt-~~ 194 (646)
+-.+......++.... ....++|+||||.... ...+..|++. .+.+++|+|++.+...+. ..
T Consensus 105 ~~~~~~s~~~i~l~i~~p-~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 105 GTNKGISPVPINLRVYSP-HVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred CCCCcccCcceEEEEeCC-CCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 1112222333333222 3468999999999632 1234557774 458899999998877766 35
Q ss_pred HHHHHHHcCCCeEEEEeccCCCCCC
Q 043429 195 NVYLALENNLEIIPVLNKIDLPGAE 219 (646)
Q Consensus 195 ~~~~~~~~~~piIvViNKiDl~~~~ 219 (646)
........+.|+++|+||+|.....
T Consensus 184 ia~~ld~~~~rti~ViTK~D~~~~~ 208 (240)
T smart00053 184 LAKEVDPQGERTIGVITKLDLMDEG 208 (240)
T ss_pred HHHHHHHcCCcEEEEEECCCCCCcc
Confidence 5555556789999999999987543
No 323
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.78 E-value=6.7e-08 Score=103.25 Aligned_cols=85 Identities=18% Similarity=0.156 Sum_probs=58.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecC-------------CCeE
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFEN-------------EPFC 152 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~-------------~~~~ 152 (646)
.+|+|+|.+|+|||||+|+|..... .....+++|++.....+.+.... -...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~---------------~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~ 67 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA---------------EAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPAT 67 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---------------eecccccccccceEEEEEeccccchhhHHhcCCccccCce
Confidence 4799999999999999999976321 12334566766665555443210 0135
Q ss_pred EEEEeCCCCccc-------hhhHhhhhhhccceEEEEeCC
Q 043429 153 LNLIDTPGHVDF-------SYEVSRSLAACEGALLVVDAS 185 (646)
Q Consensus 153 l~liDTPG~~df-------~~~~~~~l~~ad~~IlVvDa~ 185 (646)
+.++||||..+- .......++.||++++|||+.
T Consensus 68 i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 68 IEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred EEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 899999997642 123445678899999999985
No 324
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.77 E-value=3.8e-08 Score=105.21 Aligned_cols=159 Identities=14% Similarity=0.158 Sum_probs=88.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccce---eeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGI---TIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~gi---Ti~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
.+|+|+|.+|+|||||+|+|.+....-. -.-..|. |... ..|.... .-.+.+||.||..
T Consensus 36 l~IaV~G~sGsGKSSfINalrGl~~~d~-------------~aA~tGv~etT~~~----~~Y~~p~-~pnv~lWDlPG~g 97 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALRGLGHEDE-------------GAAPTGVVETTMEP----TPYPHPK-FPNVTLWDLPGIG 97 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHTT--TTST-------------TS--SSSHSCCTS-----EEEE-SS--TTEEEEEE--GG
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCc-------------CcCCCCCCcCCCCC----eeCCCCC-CCCCeEEeCCCCC
Confidence 5999999999999999999965211100 0001111 2222 2333221 2358899999986
Q ss_pred cchhhHhhh-----hhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCC----------CCCchHHHHHH
Q 043429 163 DFSYEVSRS-----LAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP----------GAEPSRVAREI 227 (646)
Q Consensus 163 df~~~~~~~-----l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~----------~~~~~~~~~el 227 (646)
.-......| +...|.+|++.+ ......++..+....+.++|+.+|-+|+|.. ..+.++..+++
T Consensus 98 t~~f~~~~Yl~~~~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~I 175 (376)
T PF05049_consen 98 TPNFPPEEYLKEVKFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEI 175 (376)
T ss_dssp GSS--HHHHHHHTTGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHH
T ss_pred CCCCCHHHHHHHccccccCEEEEEeC--CCCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHH
Confidence 433333333 445776666544 4566677777778888999999999999951 11234455555
Q ss_pred HHH-------hCCCccccccccccccc--chhHHHHHHHHhCCCCC
Q 043429 228 EEV-------IGLDCTNAILCSAKEGI--GINEILNAIVKRIPPPS 264 (646)
Q Consensus 228 ~~~-------l~~~~~~i~~vSAk~g~--GV~eLl~~I~~~ip~P~ 264 (646)
++. .|....++|.+|+.+-. ....|.+.+.+.+|.-.
T Consensus 176 R~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 176 RENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp HHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred HHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 443 25565689999998644 57789999999888754
No 325
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.76 E-value=7.4e-08 Score=100.32 Aligned_cols=138 Identities=19% Similarity=0.297 Sum_probs=77.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.||.++|.+|+|||||+|.|+.......... .+.......+ |...........-++....+++|||||+.+..
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~-----~~~~~~~~~~--~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i 77 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSS-----IPPPSASISR--TLEIEERTVELEENGVKLNLTIIDTPGFGDNI 77 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS--------------S------S--CEEEEEEEEEEEETCEEEEEEEEEEC-CSSSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhccccccccc-----cccccccccc--ccceeeEEEEeccCCcceEEEEEeCCCccccc
Confidence 5899999999999999999988422211100 0000011122 22233333444444567889999999987632
Q ss_pred hh------H--------hhhh-------------hhccceEEEEeCC-CCccHhhHHHHHHHHHcCCCeEEEEeccCCCC
Q 043429 166 YE------V--------SRSL-------------AACEGALLVVDAS-QGVEAQTLANVYLALENNLEIIPVLNKIDLPG 217 (646)
Q Consensus 166 ~~------~--------~~~l-------------~~ad~~IlVvDa~-~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~ 217 (646)
.. + ..++ ...|+||++++++ .+....++. ....+...+++|+|+.|+|...
T Consensus 78 ~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~-~mk~Ls~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 78 DNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIE-FMKRLSKRVNVIPVIAKADTLT 156 (281)
T ss_dssp THCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHH-HHHHHTTTSEEEEEESTGGGS-
T ss_pred cchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHH-HHHHhcccccEEeEEecccccC
Confidence 11 1 1111 1278999999987 467776664 4555666789999999999754
Q ss_pred CC-chHHHHHHHHHh
Q 043429 218 AE-PSRVAREIEEVI 231 (646)
Q Consensus 218 ~~-~~~~~~el~~~l 231 (646)
.. .....+.+.+.+
T Consensus 157 ~~el~~~k~~i~~~l 171 (281)
T PF00735_consen 157 PEELQAFKQRIREDL 171 (281)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 32 223334444444
No 326
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.75 E-value=3.2e-08 Score=94.59 Aligned_cols=64 Identities=28% Similarity=0.301 Sum_probs=49.0
Q ss_pred CeEEEEEeCCCCccch----hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc-CCCeEEEEecc
Q 043429 150 PFCLNLIDTPGHVDFS----YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-NLEIIPVLNKI 213 (646)
Q Consensus 150 ~~~l~liDTPG~~df~----~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~-~~piIvViNKi 213 (646)
...+.|+||||..+.. ..+..++..+|++|+|+++++.........+...... +...++|.||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 4568999999986522 4567888999999999999998877777777666664 34488888985
No 327
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.74 E-value=1.7e-07 Score=98.31 Aligned_cols=139 Identities=19% Similarity=0.320 Sum_probs=85.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|.++|.+|.||||++|.|+...-.- +.-.+....+. ...|+..........-++-...+++|||||..|+.
T Consensus 24 f~im~~G~sG~GKttfiNtL~~~~l~~------~~~~~~~~~~~-~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~i 96 (373)
T COG5019 24 FTIMVVGESGLGKTTFINTLFGTSLVD------ETEIDDIRAEG-TSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFI 96 (373)
T ss_pred eEEEEecCCCCchhHHHHhhhHhhccC------CCCccCccccc-CCcceEEEeeeeeeecCCeEEEEEEeccCCccccc
Confidence 589999999999999999999841111 00011111110 11344444444444445567889999999998855
Q ss_pred hh--------------Hhhhhh--------------hccceEEEEeCC-CCccHhhHHHHHHHHHcCCCeEEEEeccCCC
Q 043429 166 YE--------------VSRSLA--------------ACEGALLVVDAS-QGVEAQTLANVYLALENNLEIIPVLNKIDLP 216 (646)
Q Consensus 166 ~~--------------~~~~l~--------------~ad~~IlVvDa~-~g~~~qt~~~~~~~~~~~~piIvViNKiDl~ 216 (646)
.. ...++. ..++||+.+-.+ .|....+++.. ..+...+.+|+|+-|.|..
T Consensus 97 dNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~M-k~ls~~vNlIPVI~KaD~l 175 (373)
T COG5019 97 DNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAM-KRLSKRVNLIPVIAKADTL 175 (373)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHH-HHHhcccCeeeeeeccccC
Confidence 32 112221 167899999876 57777777543 3444568899999999965
Q ss_pred CCC-chHHHHHHHHHhC
Q 043429 217 GAE-PSRVAREIEEVIG 232 (646)
Q Consensus 217 ~~~-~~~~~~el~~~l~ 232 (646)
..+ .....+.+.+.+.
T Consensus 176 T~~El~~~K~~I~~~i~ 192 (373)
T COG5019 176 TDDELAEFKERIREDLE 192 (373)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 433 3334444444443
No 328
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.73 E-value=7.5e-08 Score=98.30 Aligned_cols=104 Identities=26% Similarity=0.340 Sum_probs=76.3
Q ss_pred CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHH
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIE 228 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~ 228 (646)
-+|.+.||.|-|...-... ....+|.+++|.=+.-|.+.|.++.-.+.+.. |+|+||.|+.+++ ....++.
T Consensus 142 aG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD----i~vINKaD~~~A~--~a~r~l~ 212 (323)
T COG1703 142 AGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIAD----IIVINKADRKGAE--KAARELR 212 (323)
T ss_pred cCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhhh----eeeEeccChhhHH--HHHHHHH
Confidence 4788899999987653222 34568999999999999999988776666655 9999999976653 2223333
Q ss_pred HHhCCC---------cccccccccccccchhHHHHHHHHhCC
Q 043429 229 EVIGLD---------CTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 229 ~~l~~~---------~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
..+... ..|++.+||.+|+|+++|++.|.++..
T Consensus 213 ~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 213 SALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred HHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 332211 237999999999999999999988653
No 329
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.71 E-value=1.6e-07 Score=94.00 Aligned_cols=157 Identities=18% Similarity=0.178 Sum_probs=86.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|..|+||||++|.|++....... ......|.........+. +..+++|||||..|-.
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~-------------~~~~~~t~~~~~~~~~~~----g~~v~VIDTPGl~d~~ 63 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSG-------------SSAKSVTQECQKYSGEVD----GRQVTVIDTPGLFDSD 63 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS---------------TTTSS--SS-EEEEEEET----TEEEEEEE--SSEETT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeec-------------cccCCcccccceeeeeec----ceEEEEEeCCCCCCCc
Confidence 47999999999999999999874321110 011223444444444333 7899999999986532
Q ss_pred -------hhHhh----hhhhccceEEEEeCCCCccHhhHHHHHHHHHc-C----CCeEEEEeccCCCCC-CchHHHH---
Q 043429 166 -------YEVSR----SLAACEGALLVVDASQGVEAQTLANVYLALEN-N----LEIIPVLNKIDLPGA-EPSRVAR--- 225 (646)
Q Consensus 166 -------~~~~~----~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~-~----~piIvViNKiDl~~~-~~~~~~~--- 225 (646)
.++.+ .....+++|||+... ..+......+....+. + .-+++|++..|.... ..++..+
T Consensus 64 ~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~ 142 (212)
T PF04548_consen 64 GSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKES 142 (212)
T ss_dssp EEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccC
Confidence 12222 234578899999998 6666665555444331 2 238888998885443 3222222
Q ss_pred --HHHHHhCCCcccccccccc------cccchhHHHHHHHHhC
Q 043429 226 --EIEEVIGLDCTNAILCSAK------EGIGINEILNAIVKRI 260 (646)
Q Consensus 226 --el~~~l~~~~~~i~~vSAk------~g~GV~eLl~~I~~~i 260 (646)
.+.+.+..-...+...+.+ ....+.+||+.|-+.+
T Consensus 143 ~~~l~~li~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv 185 (212)
T PF04548_consen 143 NEALQELIEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEMV 185 (212)
T ss_dssp HHHHHHHHHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHhHHhhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHHH
Confidence 2333332111124444444 3456778888776544
No 330
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.70 E-value=2.4e-07 Score=96.60 Aligned_cols=115 Identities=15% Similarity=0.151 Sum_probs=66.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
...+|+++|.+|+||||++|+|++...... .. ..+.|.........+ .+..+++|||||..+
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~v---------s~-----f~s~t~~~~~~~~~~----~G~~l~VIDTPGL~d 98 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATV---------SA-----FQSEGLRPMMVSRTR----AGFTLNIIDTPGLIE 98 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccc---------cC-----CCCcceeEEEEEEEE----CCeEEEEEECCCCCc
Confidence 356999999999999999999987422111 00 011112211122222 378999999999987
Q ss_pred chhh---Hhhhhh------hccceEEEEeCCC-CccHhhHH---HHHHHHHc--CCCeEEEEeccCCC
Q 043429 164 FSYE---VSRSLA------ACEGALLVVDASQ-GVEAQTLA---NVYLALEN--NLEIIPVLNKIDLP 216 (646)
Q Consensus 164 f~~~---~~~~l~------~ad~~IlVvDa~~-g~~~qt~~---~~~~~~~~--~~piIvViNKiDl~ 216 (646)
.... ....++ ..|++|+|...+. .....+.. .+....-. -.+.|+|+|+.|..
T Consensus 99 ~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 99 GGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred hHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 5322 112222 4788888855432 23322222 22222211 24689999999964
No 331
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.69 E-value=9e-08 Score=99.02 Aligned_cols=83 Identities=19% Similarity=0.171 Sum_probs=56.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecC-------------CCeEEE
Q 043429 88 FSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFEN-------------EPFCLN 154 (646)
Q Consensus 88 I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~-------------~~~~l~ 154 (646)
|+|+|.+|+|||||+|+|..... .....+++|++.....+.+.... ....+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~---------------~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~ 65 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA---------------EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIE 65 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC---------------ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEE
Confidence 58999999999999999976321 12333566777666555553110 012589
Q ss_pred EEeCCCCccc-------hhhHhhhhhhccceEEEEeCC
Q 043429 155 LIDTPGHVDF-------SYEVSRSLAACEGALLVVDAS 185 (646)
Q Consensus 155 liDTPG~~df-------~~~~~~~l~~ad~~IlVvDa~ 185 (646)
++||||..+- .......++.||++++|||+.
T Consensus 66 lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 66 FVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred EEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 9999997641 223445678899999999985
No 332
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.69 E-value=5.2e-08 Score=100.89 Aligned_cols=171 Identities=19% Similarity=0.202 Sum_probs=92.0
Q ss_pred cCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccc-c-ccccccccccccc--ccee-eeeeE---EEEEE------
Q 043429 79 KVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE-M-KEQFLDNMDLERE--RGIT-IKLQA---ARMRY------ 144 (646)
Q Consensus 79 ~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~-~-~~~~~d~~~~e~e--~giT-i~~~~---~~~~~------ 144 (646)
.+....+.-+.|+|.+|+|||||+++++.....-.+.. . ++.... .+.++- .|+. +.... +.+.-
T Consensus 98 ~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~-~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~A 176 (290)
T PRK10463 98 RFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTV-NDAARIRATGTPAIQVNTGKGCHLDAQMIADA 176 (290)
T ss_pred HHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcH-HHHHHHHhcCCcEEEecCCCCCcCcHHHHHHH
Confidence 34556678999999999999999999987421111110 0 111111 112211 1111 01100 00000
Q ss_pred --EecCCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCC---C
Q 043429 145 --VFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGA---E 219 (646)
Q Consensus 145 --~~~~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~---~ 219 (646)
..+.....+-||++-|.-...... -+. .+.-+.++++..+... .. ..-.....+-++|+||+|+... +
T Consensus 177 l~~L~~~~~d~liIEnvGnLvcPa~f--dlg-e~~~v~vlsV~eg~dk-pl---Kyp~~f~~ADIVVLNKiDLl~~~~~d 249 (290)
T PRK10463 177 APRLPLDDNGILFIENVGNLVCPASF--DLG-EKHKVAVLSVTEGEDK-PL---KYPHMFAAASLMLLNKVDLLPYLNFD 249 (290)
T ss_pred HHHHhhcCCcEEEEECCCCccCCCcc--chh-hceeEEEEECcccccc-ch---hccchhhcCcEEEEEhHHcCcccHHH
Confidence 001124456688887742111110 111 1334677888877431 11 1112235567999999999753 2
Q ss_pred chHHHHHHHHHhCCCcccccccccccccchhHHHHHHHHh
Q 043429 220 PSRVAREIEEVIGLDCTNAILCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 220 ~~~~~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ 259 (646)
.+...+.+++.. +..+++++||++|+|+++|++||.++
T Consensus 250 le~~~~~lr~ln--p~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 250 VEKCIACAREVN--PEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred HHHHHHHHHhhC--CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 333444444433 34679999999999999999999764
No 333
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.69 E-value=3.6e-08 Score=94.96 Aligned_cols=163 Identities=20% Similarity=0.231 Sum_probs=89.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccc-c-ccccc--ccc-----ccccccceeeeeeEEEEEEE----------
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE-M-KEQFL--DNM-----DLERERGITIKLQAARMRYV---------- 145 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~-~-~~~~~--d~~-----~~e~e~giTi~~~~~~~~~~---------- 145 (646)
++.|.+.|++|||||+|+++++.....-.+.. . ++.++ |.. ..++..+++..- .++..-.
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~-~CH~da~m~~~ai~~l~ 91 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGK-GCHLDASMNLEAIEELV 91 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCC-ccCCcHHHHHHHHHHHh
Confidence 57999999999999999999987432111111 0 11111 111 111111111110 0100000
Q ss_pred ecCCCeEEEEEeCCCCccchhhHhhhhhhcc-ceEEEEeCCCCccHhhH-HHHHHHHHcCCCeEEEEeccCCCC---CCc
Q 043429 146 FENEPFCLNLIDTPGHVDFSYEVSRSLAACE-GALLVVDASQGVEAQTL-ANVYLALENNLEIIPVLNKIDLPG---AEP 220 (646)
Q Consensus 146 ~~~~~~~l~liDTPG~~df~~~~~~~l~~ad-~~IlVvDa~~g~~~qt~-~~~~~~~~~~~piIvViNKiDl~~---~~~ 220 (646)
.+.....+-||...| ....-. +..-.| .-|+|+|.++|..-.-. -.... ..=++|+||.|+.. ++.
T Consensus 92 ~~~~~~Dll~iEs~G--NL~~~~--sp~L~d~~~v~VidvteGe~~P~K~gP~i~-----~aDllVInK~DLa~~v~~dl 162 (202)
T COG0378 92 LDFPDLDLLFIESVG--NLVCPF--SPDLGDHLRVVVIDVTEGEDIPRKGGPGIF-----KADLLVINKTDLAPYVGADL 162 (202)
T ss_pred hcCCcCCEEEEecCc--ceeccc--CcchhhceEEEEEECCCCCCCcccCCCcee-----EeeEEEEehHHhHHHhCccH
Confidence 001225677888888 211111 122234 78999999998653221 00000 01389999999864 444
Q ss_pred hHHHHHHHHHhCCCcccccccccccccchhHHHHHHHHh
Q 043429 221 SRVAREIEEVIGLDCTNAILCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 221 ~~~~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ 259 (646)
+...+..++.- +..|++++|+++|+|++++++|+...
T Consensus 163 evm~~da~~~n--p~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 163 EVMARDAKEVN--PEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred HHHHHHHHHhC--CCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 44444444433 34589999999999999999998754
No 334
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.67 E-value=6.4e-08 Score=97.43 Aligned_cols=161 Identities=20% Similarity=0.234 Sum_probs=105.1
Q ss_pred cCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeC
Q 043429 79 KVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDT 158 (646)
Q Consensus 79 ~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDT 158 (646)
+.|.++...+++.|.+|+|||+|+|.++...... |... ...|-|...+...+ +..+.++|.
T Consensus 130 D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~----------~t~k--~K~g~Tq~in~f~v-------~~~~~~vDl 190 (320)
T KOG2486|consen 130 DCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIA----------DTSK--SKNGKTQAINHFHV-------GKSWYEVDL 190 (320)
T ss_pred cCCCCCCceeeeecCCcccHHHHHhhhhhhhhhh----------hhcC--CCCccceeeeeeec-------cceEEEEec
Confidence 3444566899999999999999999998732111 1111 13444444433222 567889999
Q ss_pred CCCc----------cchhhHhhhhhh---ccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCc---hH
Q 043429 159 PGHV----------DFSYEVSRSLAA---CEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEP---SR 222 (646)
Q Consensus 159 PG~~----------df~~~~~~~l~~---ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~---~~ 222 (646)
||+. |+...+..|+-. ---+.+++|++.+++..+...+..+-+.++|..+|+||||...... ..
T Consensus 191 PG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kK 270 (320)
T KOG2486|consen 191 PGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKK 270 (320)
T ss_pred CCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhhccccccC
Confidence 9942 344444444433 2246889999999999999889999999999999999999643211 11
Q ss_pred HHHHHHH-HhCC------CcccccccccccccchhHHHHHHHH
Q 043429 223 VAREIEE-VIGL------DCTNAILCSAKEGIGINEILNAIVK 258 (646)
Q Consensus 223 ~~~el~~-~l~~------~~~~i~~vSAk~g~GV~eLl~~I~~ 258 (646)
....+.. ..++ ..-|.+.+|+.++.|+++|+-.|..
T Consensus 271 p~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 271 PGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ccccceeehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence 1111111 1111 1125678999999999998766643
No 335
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.66 E-value=5.5e-08 Score=92.20 Aligned_cols=95 Identities=25% Similarity=0.208 Sum_probs=67.3
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcccccccccc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAK 244 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~~vSAk 244 (646)
.....+.++.+|++++|+|++++...+...........+.|+++|+||+|+..........++.+..+ .+++++||+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~iSa~ 79 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKESEG---IPVVYVSAK 79 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCC---CcEEEEEcc
Confidence 34566777889999999999887666554433334456899999999999853211111112222222 358999999
Q ss_pred cccchhHHHHHHHHhCCC
Q 043429 245 EGIGINEILNAIVKRIPP 262 (646)
Q Consensus 245 ~g~GV~eLl~~I~~~ip~ 262 (646)
+|.|+++|++.|.+.+|.
T Consensus 80 ~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 80 ERLGTKILRRTIKELAKI 97 (156)
T ss_pred ccccHHHHHHHHHHHHhh
Confidence 999999999999998874
No 336
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=4e-08 Score=103.65 Aligned_cols=126 Identities=34% Similarity=0.542 Sum_probs=100.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCcccccc----------------ccccccccccccccceeeeeeEEEEEEEecC
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREM----------------KEQFLDNMDLERERGITIKLQAARMRYVFEN 148 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~----------------~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~ 148 (646)
.+|++++||.++||||+.- +.++.++++.+ ..+++|....|+++|+++.... |....
T Consensus 7 ~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l----~~~~t 79 (391)
T KOG0052|consen 7 HINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIAL----WKFET 79 (391)
T ss_pred ccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEe----ecccc
Confidence 3699999999999999876 44555555432 2578999999999998865543 44444
Q ss_pred CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCC-------ccHhhHHHHHHHHHcCC-CeEEEEeccCCCC
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG-------VEAQTLANVYLALENNL-EIIPVLNKIDLPG 217 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g-------~~~qt~~~~~~~~~~~~-piIvViNKiDl~~ 217 (646)
..+.++++|.|||.+|...+......+|.+++++.+..| ...|+.++.+++...++ +.++.+||+|...
T Consensus 80 ~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~ 156 (391)
T KOG0052|consen 80 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 156 (391)
T ss_pred eeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccC
Confidence 589999999999999999999999999999999988432 34688888888888864 4888999999643
No 337
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.53 E-value=2e-07 Score=91.52 Aligned_cols=101 Identities=27% Similarity=0.175 Sum_probs=70.2
Q ss_pred CCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCc-hHHHHHHH-----HHhC
Q 043429 159 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEP-SRVAREIE-----EVIG 232 (646)
Q Consensus 159 PG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~-~~~~~el~-----~~l~ 232 (646)
|.+..|...+..++..+|++++|+|+++......... .....+.|+++|+||+|+..... ....+.+. +..+
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l--~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRL--RLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhH--HHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 3344467888889999999999999987543222222 22235789999999999864322 22222222 2233
Q ss_pred CCcccccccccccccchhHHHHHHHHhCC
Q 043429 233 LDCTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 233 ~~~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
....+++++||++|.|+++|+++|.+.+|
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 43346899999999999999999999886
No 338
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.49 E-value=2.9e-07 Score=99.42 Aligned_cols=195 Identities=17% Similarity=0.155 Sum_probs=109.4
Q ss_pred CCCEEEeeecccccccCCCcCccchhhcccccccccccccccccceeEeecCCCCCchHHhhhhhccccccCCCCCceeE
Q 043429 9 PAPVLSIKHQTFATLKKPHISSLSHFLSKSHRRCNYSLSISKHSCIFRVSCQSQATDAELATRVGQDRLLKVPASNIRNF 88 (646)
Q Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~s~~~~~s~~~~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ir~I 88 (646)
+.|++.+.++.+.............|+... ...........+.+|+..+.+..+......... . -+++
T Consensus 90 ~~piilV~NK~DLl~k~~~~~~~~~~l~~~-----~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~-----~--~~~v 157 (360)
T TIGR03597 90 GNPVLLVGNKIDLLPKSVNLSKIKEWMKKR-----AKELGLKPVDIILVSAKKGNGIDELLDKIKKAR-----N--KKDV 157 (360)
T ss_pred CCCEEEEEEchhhCCCCCCHHHHHHHHHHH-----HHHcCCCcCcEEEecCCCCCCHHHHHHHHHHHh-----C--CCeE
Confidence 679999999999865443334444554320 111111123567889999998888877753321 1 1689
Q ss_pred EEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchhhH
Q 043429 89 SIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYEV 168 (646)
Q Consensus 89 ~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~~~ 168 (646)
.++|.+|+|||||+|+|+....... +.......+|+|.......+ .-.+.++||||..... .+
T Consensus 158 ~~vG~~nvGKStliN~l~~~~~~~~---------~~~~~s~~pgtT~~~~~~~~-------~~~~~l~DtPG~~~~~-~~ 220 (360)
T TIGR03597 158 YVVGVTNVGKSSLINKLLKQNNGDK---------DVITTSPFPGTTLDLIEIPL-------DDGHSLYDTPGIINSH-QM 220 (360)
T ss_pred EEECCCCCCHHHHHHHHHhhccCCc---------ceeeecCCCCeEeeEEEEEe-------CCCCEEEECCCCCChh-Hh
Confidence 9999999999999999997432110 11224556788877543322 1234699999987532 22
Q ss_pred hhhh-----------hhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCC-CchHHHHHHHHHhC
Q 043429 169 SRSL-----------AACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGA-EPSRVAREIEEVIG 232 (646)
Q Consensus 169 ~~~l-----------~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~-~~~~~~~el~~~l~ 232 (646)
...+ .......+.+|..+......+..+......+..+.++++|.+..+. +.+...+-+.+.+|
T Consensus 221 ~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~~g 296 (360)
T TIGR03597 221 AHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIHRTKLENADELYNKHLG 296 (360)
T ss_pred hhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeEeechhhhHHHHHhhcC
Confidence 2222 1234556666665543332222111111124456777777765443 33333333444443
No 339
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.48 E-value=2.4e-06 Score=84.22 Aligned_cols=138 Identities=19% Similarity=0.224 Sum_probs=79.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
-.||.++|.+|.|||||+|.|.... .... .. +....++-+. |+.....+....-++-..++++|||||+.|+
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~-v~~~-----s~-~~~~~~p~pk-T~eik~~thvieE~gVklkltviDTPGfGDq 117 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSH-VSDS-----SS-SDNSAEPIPK-TTEIKSITHVIEEKGVKLKLTVIDTPGFGDQ 117 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHH-Hhhc-----cC-CCcccCcccc-eEEEEeeeeeeeecceEEEEEEecCCCcccc
Confidence 3699999999999999999997621 1110 00 1111122222 3344444433444455678999999999874
Q ss_pred hh--------------hHhhhhhh--------------ccceEEEEeCCCC-ccHhhHHHHHHHHHcCCCeEEEEeccCC
Q 043429 165 SY--------------EVSRSLAA--------------CEGALLVVDASQG-VEAQTLANVYLALENNLEIIPVLNKIDL 215 (646)
Q Consensus 165 ~~--------------~~~~~l~~--------------ad~~IlVvDa~~g-~~~qt~~~~~~~~~~~~piIvViNKiDl 215 (646)
.. ....||+. .++|++.+.++-. ...-+++.+ .-+..-+.+++|+-|.|-
T Consensus 118 InN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDiefl-krLt~vvNvvPVIakaDt 196 (336)
T KOG1547|consen 118 INNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFL-KRLTEVVNVVPVIAKADT 196 (336)
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHH-HHHhhhheeeeeEeeccc
Confidence 42 12233322 6788999887742 333344332 233345668999999995
Q ss_pred CCC-CchHHHHHHHHHh
Q 043429 216 PGA-EPSRVAREIEEVI 231 (646)
Q Consensus 216 ~~~-~~~~~~~el~~~l 231 (646)
..- ......+.+++.+
T Consensus 197 lTleEr~~FkqrI~~el 213 (336)
T KOG1547|consen 197 LTLEERSAFKQRIRKEL 213 (336)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 432 2233344555554
No 340
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.47 E-value=2.8e-07 Score=94.30 Aligned_cols=93 Identities=25% Similarity=0.262 Sum_probs=68.4
Q ss_pred ccchhhHhhhhhhccceEEEEeCCCCc-cHhhHHHHHHHHH-cCCCeEEEEeccCCCCCCch--HHHHHHHHHhCCCccc
Q 043429 162 VDFSYEVSRSLAACEGALLVVDASQGV-EAQTLANVYLALE-NNLEIIPVLNKIDLPGAEPS--RVAREIEEVIGLDCTN 237 (646)
Q Consensus 162 ~df~~~~~~~l~~ad~~IlVvDa~~g~-~~qt~~~~~~~~~-~~~piIvViNKiDl~~~~~~--~~~~el~~~l~~~~~~ 237 (646)
++|......+++.+|++++|+|++++. ++..+..|..... .++|+++|+||+||...... +..+.+. ..+ .+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g---~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIG---YQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHH-HCC---Ce
Confidence 345555566899999999999999765 7878877776544 68999999999999643221 1122222 233 35
Q ss_pred ccccccccccchhHHHHHHHH
Q 043429 238 AILCSAKEGIGINEILNAIVK 258 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~ 258 (646)
++++||++|.|++++++.+.+
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 899999999999999998754
No 341
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.46 E-value=4.8e-07 Score=88.74 Aligned_cols=119 Identities=21% Similarity=0.298 Sum_probs=84.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
-++|.++|.+|+|||++=..+...-.+- | -+..|-||+....++.|- ++..+++||+.|++.|
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~----------D----~~rlg~tidveHsh~Rfl---Gnl~LnlwDcGgqe~f 66 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIAR----------D----TRRLGATIDVEHSHVRFL---GNLVLNLWDCGGQEEF 66 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhh----------h----hhccCCcceeeehhhhhh---hhheeehhccCCcHHH
Confidence 4799999999999999876555311000 1 234566777766666554 3588999999999976
Q ss_pred hhhHh-----hhhhhccceEEEEeCCCCccHhhHHHHHHHHH---cCCC---eEEEEeccCCCCCCc
Q 043429 165 SYEVS-----RSLAACEGALLVVDASQGVEAQTLANVYLALE---NNLE---IIPVLNKIDLPGAEP 220 (646)
Q Consensus 165 ~~~~~-----~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~---~~~p---iIvViNKiDl~~~~~ 220 (646)
..... ..++..++.++|+|+....-..+...+..+++ .+-| +++.+.|+|+...+.
T Consensus 67 men~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~ 133 (295)
T KOG3886|consen 67 MENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDA 133 (295)
T ss_pred HHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccch
Confidence 65433 36778999999999998766666666655444 3444 899999999976554
No 342
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=1.5e-06 Score=91.86 Aligned_cols=138 Identities=18% Similarity=0.304 Sum_probs=84.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.++.++|.+|.|||||+|.|+...-. ..+ ++ +........ |+..........-++-...++++||||..|+.
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~-~~~----~~-~~~~~~~~~--t~~i~~~~~~iee~g~~l~LtvidtPGfGD~v 93 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLS-GNR----EV-PGASERIKE--TVEIESTKVEIEENGVKLNLTVIDTPGFGDAV 93 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhcc-CCc----cc-CCcccCccc--cceeeeeeeeecCCCeEEeeEEeccCCCcccc
Confidence 58999999999999999999874111 000 00 111111112 33433334444434556789999999998744
Q ss_pred hh--------------Hhhhhh-------------hccceEEEEeCC-CCccHhhHHHHHHHHHcCCCeEEEEeccCCCC
Q 043429 166 YE--------------VSRSLA-------------ACEGALLVVDAS-QGVEAQTLANVYLALENNLEIIPVLNKIDLPG 217 (646)
Q Consensus 166 ~~--------------~~~~l~-------------~ad~~IlVvDa~-~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~ 217 (646)
.. ...|+. ..++||+.+..+ .|....++. +...+...+.+|+|+-|.|...
T Consensus 94 dns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~-~Mk~l~~~vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 94 DNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIE-FMKKLSKKVNLIPVIAKADTLT 172 (366)
T ss_pred cccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHH-HHHHHhccccccceeeccccCC
Confidence 21 112222 378899999876 457777764 3445556889999999999755
Q ss_pred CC-chHHHHHHHHHhC
Q 043429 218 AE-PSRVAREIEEVIG 232 (646)
Q Consensus 218 ~~-~~~~~~el~~~l~ 232 (646)
.+ .....+.+.+.+.
T Consensus 173 ~~El~~~K~~I~~~i~ 188 (366)
T KOG2655|consen 173 KDELNQFKKRIRQDIE 188 (366)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 43 2334444444443
No 343
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.42 E-value=3.2e-06 Score=89.81 Aligned_cols=122 Identities=17% Similarity=0.140 Sum_probs=79.3
Q ss_pred eeeeeEEEEEEEecCCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCcc-----------HhhHHHHHHHHH-
Q 043429 134 TIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVE-----------AQTLANVYLALE- 201 (646)
Q Consensus 134 Ti~~~~~~~~~~~~~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~-----------~qt~~~~~~~~~- 201 (646)
|.+.....+.+. +..+.+||++|+...+..|..++..++++++|+|.++-.+ .+++..|.....
T Consensus 148 T~Gi~~~~f~~~----~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~ 223 (317)
T cd00066 148 TTGIVETKFTIK----NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNS 223 (317)
T ss_pred cCCeeEEEEEec----ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhC
Confidence 455555555554 7889999999999999999999999999999999987421 122333333333
Q ss_pred ---cCCCeEEEEeccCCCC-------------------CCchHHHHHHHHHhC-C-----CcccccccccccccchhHHH
Q 043429 202 ---NNLEIIPVLNKIDLPG-------------------AEPSRVAREIEEVIG-L-----DCTNAILCSAKEGIGINEIL 253 (646)
Q Consensus 202 ---~~~piIvViNKiDl~~-------------------~~~~~~~~el~~~l~-~-----~~~~i~~vSAk~g~GV~eLl 253 (646)
.++|+++++||.|+.. .+.+.+.+-+...+. + ...-+..++|..-.++..+|
T Consensus 224 ~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf 303 (317)
T cd00066 224 RWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVF 303 (317)
T ss_pred ccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHH
Confidence 3789999999999531 122333333333321 1 11123566777777777777
Q ss_pred HHHHHh
Q 043429 254 NAIVKR 259 (646)
Q Consensus 254 ~~I~~~ 259 (646)
+.+.+.
T Consensus 304 ~~v~~~ 309 (317)
T cd00066 304 DAVKDI 309 (317)
T ss_pred HHHHHH
Confidence 766554
No 344
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.39 E-value=1e-06 Score=90.39 Aligned_cols=147 Identities=22% Similarity=0.231 Sum_probs=93.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc-
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD- 163 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d- 163 (646)
..-|+++|-.|+|||||+++|.. +...++ ++....+++ ........ .+..+-+.||-|+..
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~-Aal~p~----drLFATLDp----------T~h~a~Lp---sg~~vlltDTvGFisd 239 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTK-AALYPN----DRLFATLDP----------TLHSAHLP---SGNFVLLTDTVGFISD 239 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHh-hhcCcc----chhheeccc----------hhhhccCC---CCcEEEEeechhhhhh
Confidence 45799999999999999999973 222221 222222222 21111122 256677899999753
Q ss_pred --------chhhHhhhhhhccceEEEEeCCCCccHhh-HHHHHHHHHcCCC-------eEEEEeccCCCCCCchHHHHHH
Q 043429 164 --------FSYEVSRSLAACEGALLVVDASQGVEAQT-LANVYLALENNLE-------IIPVLNKIDLPGAEPSRVAREI 227 (646)
Q Consensus 164 --------f~~~~~~~l~~ad~~IlVvDa~~g~~~qt-~~~~~~~~~~~~p-------iIvViNKiDl~~~~~~~~~~el 227 (646)
|.. +..-...+|.++.|+|.+.+.-.+- ...+.-....++| ++=|=||+|......+..
T Consensus 240 LP~~LvaAF~A-TLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E---- 314 (410)
T KOG0410|consen 240 LPIQLVAAFQA-TLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE---- 314 (410)
T ss_pred CcHHHHHHHHH-HHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc----
Confidence 221 2234566899999999998864433 3444444445664 566778888755443211
Q ss_pred HHHhCCCcccccccccccccchhHHHHHHHHhCC
Q 043429 228 EEVIGLDCTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 228 ~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
....+++||++|.|++++++.+-..+.
T Consensus 315 -------~n~~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 315 -------KNLDVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred -------cCCccccccccCccHHHHHHHHHHHhh
Confidence 011589999999999999999876553
No 345
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.37 E-value=1.5e-06 Score=85.34 Aligned_cols=131 Identities=19% Similarity=0.179 Sum_probs=76.0
Q ss_pred CCCCEEEeeecccccccCCCcCccchhhcccccccccccccccccceeEeecCCCCCchHHhhhhhccccccCCCCCcee
Q 043429 8 SPAPVLSIKHQTFATLKKPHISSLSHFLSKSHRRCNYSLSISKHSCIFRVSCQSQATDAELATRVGQDRLLKVPASNIRN 87 (646)
Q Consensus 8 ~~~~~~~i~~~~~~~~~~~~~~~~s~~~~~s~~~~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 87 (646)
.+.|.+.+.++.+.............|... .............+.+|+..+.+...+...+.... + .-.+
T Consensus 60 ~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l----~--~~~~ 129 (190)
T cd01855 60 GNNPVILVGNKIDLLPKDKNLVRIKNWLRA----KAAAGLGLKPKDVILISAKKGWGVEELINAIKKLA----K--KGGD 129 (190)
T ss_pred CCCcEEEEEEchhcCCCCCCHHHHHHHHHH----HHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHh----h--cCCc
Confidence 467888998999964321111112222200 00001111123468889999999888877664322 1 2257
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC
Q 043429 88 FSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH 161 (646)
Q Consensus 88 I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~ 161 (646)
++++|.+|+|||||+|+|+.......+ ..........+|+|.......+. ..+.+|||||.
T Consensus 130 ~~~~G~~nvGKStliN~l~~~~~~~~~------~~~~~~~~~~~gtT~~~~~~~~~-------~~~~~~DtPG~ 190 (190)
T cd01855 130 VYVVGATNVGKSTLINALLKKDNGKKK------LKDLLTTSPIPGTTLDLIKIPLG-------NGKKLYDTPGI 190 (190)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcccccc------cccccccCCCCCeeeeeEEEecC-------CCCEEEeCcCC
Confidence 999999999999999999874321100 00011234556888876544431 25689999994
No 346
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.34 E-value=4.8e-06 Score=89.29 Aligned_cols=79 Identities=20% Similarity=0.164 Sum_probs=59.3
Q ss_pred eeeeeEEEEEEEecCCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCc-----------cHhhHHHHHHHHH-
Q 043429 134 TIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV-----------EAQTLANVYLALE- 201 (646)
Q Consensus 134 Ti~~~~~~~~~~~~~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~-----------~~qt~~~~~~~~~- 201 (646)
|.+.....+.+. +..+.+||.+|+..++..|..++..++++|+|+|.++-. -.+++..|.....
T Consensus 171 T~Gi~~~~f~~~----~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~ 246 (342)
T smart00275 171 TTGIQETAFIVK----KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNS 246 (342)
T ss_pred ccceEEEEEEEC----CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcC
Confidence 455555555554 788999999999999999999999999999999999632 1233333433333
Q ss_pred ---cCCCeEEEEeccCCC
Q 043429 202 ---NNLEIIPVLNKIDLP 216 (646)
Q Consensus 202 ---~~~piIvViNKiDl~ 216 (646)
.++|+++++||.|+.
T Consensus 247 ~~~~~~piil~~NK~D~~ 264 (342)
T smart00275 247 RWFANTSIILFLNKIDLF 264 (342)
T ss_pred ccccCCcEEEEEecHHhH
Confidence 378999999999963
No 347
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=5.1e-06 Score=87.83 Aligned_cols=86 Identities=17% Similarity=0.188 Sum_probs=56.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEe----------c-C---CCe
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVF----------E-N---EPF 151 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~----------~-~---~~~ 151 (646)
.+++|+|.||+|||||.|++......+ ..-+-.||+++........ . . ...
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~---------------aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~ 67 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEI---------------ANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPA 67 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccc---------------cCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEee
Confidence 479999999999999999997733111 1112234444333322211 0 0 134
Q ss_pred EEEEEeCCCCcc-------chhhHhhhhhhccceEEEEeCCC
Q 043429 152 CLNLIDTPGHVD-------FSYEVSRSLAACEGALLVVDASQ 186 (646)
Q Consensus 152 ~l~liDTPG~~d-------f~~~~~~~l~~ad~~IlVvDa~~ 186 (646)
.+.++|.+|... .......-++.+|+++.|||+..
T Consensus 68 ~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 68 PVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred eeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 688999999865 33456677899999999999884
No 348
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.31 E-value=2.1e-06 Score=81.54 Aligned_cols=119 Identities=15% Similarity=0.066 Sum_probs=69.7
Q ss_pred CCCEEEeeecccccccCCCcCccchhhcccccccccccccccccceeEeecCCCCCchHHhhhhhccccccCCCCCceeE
Q 043429 9 PAPVLSIKHQTFATLKKPHISSLSHFLSKSHRRCNYSLSISKHSCIFRVSCQSQATDAELATRVGQDRLLKVPASNIRNF 88 (646)
Q Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~s~~~~~s~~~~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ir~I 88 (646)
+.|.+.+-++.+.... . ....|+.. + ........+.+|+..+.+.......+.+. +.......-.+|
T Consensus 39 ~~p~ilVlNKiDl~~~---~-~~~~~~~~----~----~~~~~~~~~~iSa~~~~~~~~L~~~l~~~-~~~~~~~~~~~v 105 (157)
T cd01858 39 HKHLIFVLNKCDLVPT---W-VTARWVKI----L----SKEYPTIAFHASINNPFGKGSLIQLLRQF-SKLHSDKKQISV 105 (157)
T ss_pred CCCEEEEEEchhcCCH---H-HHHHHHHH----H----hcCCcEEEEEeeccccccHHHHHHHHHHH-HhhhccccceEE
Confidence 4788999899996421 1 12233333 0 01111224678888888777766665331 110111123579
Q ss_pred EEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC
Q 043429 89 SIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH 161 (646)
Q Consensus 89 ~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~ 161 (646)
+++|.+|+|||||+|+|+.... ......+|.|...+... . ...+.|+||||.
T Consensus 106 ~~~G~~nvGKStliN~l~~~~~--------------~~~~~~~g~T~~~~~~~----~---~~~~~liDtPGi 157 (157)
T cd01858 106 GFIGYPNVGKSSIINTLRSKKV--------------CKVAPIPGETKVWQYIT----L---MKRIYLIDCPGV 157 (157)
T ss_pred EEEeCCCCChHHHHHHHhcCCc--------------eeeCCCCCeeEeEEEEE----c---CCCEEEEECcCC
Confidence 9999999999999999986322 12344567676543322 1 224679999994
No 349
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.28 E-value=9.5e-06 Score=91.48 Aligned_cols=117 Identities=16% Similarity=0.128 Sum_probs=67.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH 161 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~ 161 (646)
.+...+|+++|.+|+||||++|.|+....... . ....++| ........+ .+..+++|||||.
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~v---------s----s~~~~TT-r~~ei~~~i----dG~~L~VIDTPGL 176 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFST---------D----AFGMGTT-SVQEIEGLV----QGVKIRVIDTPGL 176 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccc---------c----CCCCCce-EEEEEEEEE----CCceEEEEECCCC
Confidence 34457999999999999999999987422111 0 0112222 222222222 2678999999999
Q ss_pred ccch------hh----Hhhhhh--hccceEEEEeCCCCcc-HhhHHHHHHHHH-cC----CCeEEEEeccCCC
Q 043429 162 VDFS------YE----VSRSLA--ACEGALLVVDASQGVE-AQTLANVYLALE-NN----LEIIPVLNKIDLP 216 (646)
Q Consensus 162 ~df~------~~----~~~~l~--~ad~~IlVvDa~~g~~-~qt~~~~~~~~~-~~----~piIvViNKiDl~ 216 (646)
.+.. .. +.+++. .+|++|+|...+.... .++...+....+ .+ .-+|||+|..|..
T Consensus 177 ~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~l 249 (763)
T TIGR00993 177 KSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASA 249 (763)
T ss_pred CccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccC
Confidence 8742 11 222434 3788888877653222 222222222221 11 3389999999965
No 350
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.26 E-value=5.8e-06 Score=82.12 Aligned_cols=84 Identities=21% Similarity=0.284 Sum_probs=58.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc-
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF- 164 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df- 164 (646)
.+|++||-|.+|||||+..+....... .+++ -+|...-...+.|+ +..++++|.||...-
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~Sea----------A~ye-----FTTLtcIpGvi~y~----ga~IQllDLPGIieGA 123 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEA----------ASYE-----FTTLTCIPGVIHYN----GANIQLLDLPGIIEGA 123 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhh----------hcee-----eeEEEeecceEEec----CceEEEecCccccccc
Confidence 589999999999999998885411100 1111 13444444556666 889999999998642
Q ss_pred ------hhhHhhhhhhccceEEEEeCCCCc
Q 043429 165 ------SYEVSRSLAACEGALLVVDASQGV 188 (646)
Q Consensus 165 ------~~~~~~~l~~ad~~IlVvDa~~g~ 188 (646)
...+....+.+|.+++|.||+...
T Consensus 124 sqgkGRGRQviavArtaDlilMvLDatk~e 153 (364)
T KOG1486|consen 124 SQGKGRGRQVIAVARTADLILMVLDATKSE 153 (364)
T ss_pred ccCCCCCceEEEEeecccEEEEEecCCcch
Confidence 234455677899999999999754
No 351
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.23 E-value=2.1e-06 Score=82.90 Aligned_cols=99 Identities=22% Similarity=0.291 Sum_probs=68.5
Q ss_pred CCCCcc-chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcc
Q 043429 158 TPGHVD-FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCT 236 (646)
Q Consensus 158 TPG~~d-f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~ 236 (646)
.|||.. ...++...+..+|.+++|+|++.+....... + .....+.|+++|+||+|+... +.. .+..+.+.....
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~-i-~~~~~~k~~ilVlNK~Dl~~~--~~~-~~~~~~~~~~~~ 76 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPL-L-EKILGNKPRIIVLNKADLADP--KKT-KKWLKYFESKGE 76 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChh-h-HhHhcCCCEEEEEehhhcCCh--HHH-HHHHHHHHhcCC
Confidence 477753 4566778999999999999998876544332 2 122246899999999998532 211 222122221123
Q ss_pred cccccccccccchhHHHHHHHHhCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+++.+||+++.|+++|.+.+.+.+|
T Consensus 77 ~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 77 KVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHH
Confidence 5799999999999999999988764
No 352
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.22 E-value=4.7e-06 Score=79.17 Aligned_cols=90 Identities=16% Similarity=0.108 Sum_probs=59.6
Q ss_pred HhhhhhhccceEEEEeCCCCccHhhHHHHHH--HHHcCCCeEEEEeccCCCCCCchHHHHHHHHHh-CCCcccccccccc
Q 043429 168 VSRSLAACEGALLVVDASQGVEAQTLANVYL--ALENNLEIIPVLNKIDLPGAEPSRVAREIEEVI-GLDCTNAILCSAK 244 (646)
Q Consensus 168 ~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~--~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l-~~~~~~i~~vSAk 244 (646)
+.+++..+|.+++|+|++.+........... ....++|+++|+||+|+... ++. .+..+.+ ......++++||+
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~--~~~-~~~~~~~~~~~~~~~~~iSa~ 78 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPT--WVT-ARWVKILSKEYPTIAFHASIN 78 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCH--HHH-HHHHHHHhcCCcEEEEEeecc
Confidence 4567899999999999998754433322222 22235899999999998532 222 2222222 1111125889999
Q ss_pred cccchhHHHHHHHHhC
Q 043429 245 EGIGINEILNAIVKRI 260 (646)
Q Consensus 245 ~g~GV~eLl~~I~~~i 260 (646)
++.|+++|++.+.+..
T Consensus 79 ~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 79 NPFGKGSLIQLLRQFS 94 (157)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999999997654
No 353
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.21 E-value=5.2e-06 Score=78.74 Aligned_cols=124 Identities=17% Similarity=0.207 Sum_probs=76.2
Q ss_pred cCCCCCCEEEeeecccccccCCCcCccchhhcccccccccccccccccceeEeecCCCCCchHHhhhhhccc-------c
Q 043429 5 LSSSPAPVLSIKHQTFATLKKPHISSLSHFLSKSHRRCNYSLSISKHSCIFRVSCQSQATDAELATRVGQDR-------L 77 (646)
Q Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~~s~~~~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-------~ 77 (646)
+...+.|.+.+-++.+.... .....|+.. +..........+|+.++.+.......+.+.. .
T Consensus 25 ~~~~~~p~IiVlNK~Dl~~~----~~~~~~~~~--------~~~~~~~~ii~vSa~~~~gi~~L~~~i~~~~~~~~~~~~ 92 (155)
T cd01849 25 IKEKGKKLILVLNKADLVPK----EVLRKWLAY--------LRHSYPTIPFKISATNGQGIEKKESAFTKQTNSNLKSYA 92 (155)
T ss_pred HhcCCCCEEEEEechhcCCH----HHHHHHHHH--------HHhhCCceEEEEeccCCcChhhHHHHHHHHhHHHHHHHH
Confidence 34567899999899886311 112233211 1111234467889999888877776543210 0
Q ss_pred ccCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEe
Q 043429 78 LKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLID 157 (646)
Q Consensus 78 ~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liD 157 (646)
.........+++++|.+|+|||||+|+|+.... ...+..+|+|.......+ +..+.++|
T Consensus 93 ~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~--------------~~~~~~~~~t~~~~~~~~-------~~~~~liD 151 (155)
T cd01849 93 KDGKLKKSITVGVIGYPNVGKSSVINALLNKLK--------------LKVGNVPGTTTSQQEVKL-------DNKIKLLD 151 (155)
T ss_pred hccccccCcEEEEEccCCCCHHHHHHHHHcccc--------------ccccCCCCcccceEEEEe-------cCCEEEEE
Confidence 000112357899999999999999999987321 113455677777655432 24588999
Q ss_pred CCCC
Q 043429 158 TPGH 161 (646)
Q Consensus 158 TPG~ 161 (646)
|||.
T Consensus 152 tPG~ 155 (155)
T cd01849 152 TPGI 155 (155)
T ss_pred CCCC
Confidence 9994
No 354
>PRK13796 GTPase YqeH; Provisional
Probab=98.21 E-value=4.6e-06 Score=90.36 Aligned_cols=127 Identities=20% Similarity=0.218 Sum_probs=79.7
Q ss_pred CCCEEEeeecccccccCCCcCccchhhcccccccccccccccccceeEeecCCCCCchHHhhhhhccccccCCCCCceeE
Q 043429 9 PAPVLSIKHQTFATLKKPHISSLSHFLSKSHRRCNYSLSISKHSCIFRVSCQSQATDAELATRVGQDRLLKVPASNIRNF 88 (646)
Q Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~s~~~~~s~~~~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ir~I 88 (646)
+.|.+.+.++.+.............|+.. ............+.+|+..+.+..++...+.... .-+++
T Consensus 96 ~kpviLViNK~DLl~~~~~~~~i~~~l~~-----~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~-------~~~~v 163 (365)
T PRK13796 96 NNPVLLVGNKADLLPKSVKKNKVKNWLRQ-----EAKELGLRPVDVVLISAQKGHGIDELLEAIEKYR-------EGRDV 163 (365)
T ss_pred CCCEEEEEEchhhCCCccCHHHHHHHHHH-----HHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHhc-------CCCeE
Confidence 67899999999986543333344445443 1111111223567889988888888777653321 12589
Q ss_pred EEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 89 SIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 89 ~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
.++|.+|+|||||+|+|+...... .+.....+.+|+|.+.....+ ++ ...++||||...
T Consensus 164 ~vvG~~NvGKSTLiN~L~~~~~~~---------~~~~~~s~~pGTT~~~~~~~l----~~---~~~l~DTPGi~~ 222 (365)
T PRK13796 164 YVVGVTNVGKSTLINRIIKEITGE---------KDVITTSRFPGTTLDKIEIPL----DD---GSFLYDTPGIIH 222 (365)
T ss_pred EEEcCCCCcHHHHHHHHHhhccCc---------cceEEecCCCCccceeEEEEc----CC---CcEEEECCCccc
Confidence 999999999999999998732100 012224567888887654332 22 236999999853
No 355
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.16 E-value=4.9e-06 Score=78.90 Aligned_cols=82 Identities=27% Similarity=0.228 Sum_probs=56.6
Q ss_pred cceEEEEeCCCCccHhhHHHH-HHHHHcCCCeEEEEeccCCCCCCc-hHHHHHHHHHhCCCcccccccccccccchhHHH
Q 043429 176 EGALLVVDASQGVEAQTLANV-YLALENNLEIIPVLNKIDLPGAEP-SRVAREIEEVIGLDCTNAILCSAKEGIGINEIL 253 (646)
Q Consensus 176 d~~IlVvDa~~g~~~qt~~~~-~~~~~~~~piIvViNKiDl~~~~~-~~~~~el~~~l~~~~~~i~~vSAk~g~GV~eLl 253 (646)
|.+++|+|++++......... ..+...++|+++|+||+|+..... ......+.+.. ..+++++||++|.|+++|+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~---~~~ii~vSa~~~~gi~~L~ 77 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSY---PTIPFKISATNGQGIEKKE 77 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhC---CceEEEEeccCCcChhhHH
Confidence 679999999987665544332 234456899999999999853211 11112232222 3458999999999999999
Q ss_pred HHHHHhC
Q 043429 254 NAIVKRI 260 (646)
Q Consensus 254 ~~I~~~i 260 (646)
+.|.+..
T Consensus 78 ~~i~~~~ 84 (155)
T cd01849 78 SAFTKQT 84 (155)
T ss_pred HHHHHHh
Confidence 9987654
No 356
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.14 E-value=1.6e-05 Score=81.75 Aligned_cols=158 Identities=18% Similarity=0.128 Sum_probs=90.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.||.++|+.++|||||+.+|-..... ..|.-...-...+.-...+...++++|=..|..-..
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e~~------------------KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~ 114 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSETV------------------KKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHK 114 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhccccc------------------CCCCCcceEEEecccccchhhhhcceEEecCchhhh
Confidence 58999999999999999998542211 111111111111111112234567777666644333
Q ss_pred hhHhhhhhhc---c-ceEEEEeCCCCccH-hhHHHHHHHHH---------------------------------------
Q 043429 166 YEVSRSLAAC---E-GALLVVDASQGVEA-QTLANVYLALE--------------------------------------- 201 (646)
Q Consensus 166 ~~~~~~l~~a---d-~~IlVvDa~~g~~~-qt~~~~~~~~~--------------------------------------- 201 (646)
.....++.+. + .+||++|.+++... ..+..|...+.
T Consensus 115 ~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~ 194 (473)
T KOG3905|consen 115 GLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQ 194 (473)
T ss_pred hHHhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcc
Confidence 3344444432 2 57889999988432 22333322110
Q ss_pred --------------------------cCCCeEEEEeccCCCC-----CC-----chHHHHHHHHHhCCCccccccccccc
Q 043429 202 --------------------------NNLEIIPVLNKIDLPG-----AE-----PSRVAREIEEVIGLDCTNAILCSAKE 245 (646)
Q Consensus 202 --------------------------~~~piIvViNKiDl~~-----~~-----~~~~~~el~~~l~~~~~~i~~vSAk~ 245 (646)
.++|++||++|||... .+ ++-+...++++.=.-....|++|+|.
T Consensus 195 ~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE 274 (473)
T KOG3905|consen 195 RRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKE 274 (473)
T ss_pred cccccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeeccc
Confidence 0689999999999732 11 12222233333211123479999999
Q ss_pred ccchhHHHHHHHHhCC
Q 043429 246 GIGINEILNAIVKRIP 261 (646)
Q Consensus 246 g~GV~eLl~~I~~~ip 261 (646)
..|++-|..+|++++-
T Consensus 275 ~KNidllyKYivhr~y 290 (473)
T KOG3905|consen 275 TKNIDLLYKYIVHRSY 290 (473)
T ss_pred ccchHHHHHHHHHHhc
Confidence 9999999999998763
No 357
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.09 E-value=5.2e-06 Score=86.52 Aligned_cols=100 Identities=23% Similarity=0.260 Sum_probs=69.4
Q ss_pred CCCCcc-chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcc
Q 043429 158 TPGHVD-FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCT 236 (646)
Q Consensus 158 TPG~~d-f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~ 236 (646)
.|||.. ...++...+..+|.+++|+|+..+.+........ .+ .+.|+++|+||+|+.... . .+...+.+.....
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~-~l-~~kp~IiVlNK~DL~~~~--~-~~~~~~~~~~~~~ 78 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDE-IR-GNKPRLIVLNKADLADPA--V-TKQWLKYFEEKGI 78 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHH-HH-CCCCEEEEEEccccCCHH--H-HHHHHHHHHHcCC
Confidence 488864 4567788999999999999998776554432222 22 478999999999985321 1 1222122211123
Q ss_pred cccccccccccchhHHHHHHHHhCCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+++++||+++.|+++|++.+.+.++.
T Consensus 79 ~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 79 KALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHH
Confidence 58999999999999999999887754
No 358
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=1.3e-05 Score=87.16 Aligned_cols=108 Identities=20% Similarity=0.329 Sum_probs=80.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.-++++|++|+|||||+..|...-. .+.++ +...-||+- .++..+++++.+| .|..
T Consensus 70 fIvavvGPpGtGKsTLirSlVrr~t--------k~ti~----~i~GPiTvv----------sgK~RRiTflEcp--~Dl~ 125 (1077)
T COG5192 70 FIVAVVGPPGTGKSTLIRSLVRRFT--------KQTID----EIRGPITVV----------SGKTRRITFLECP--SDLH 125 (1077)
T ss_pred eEEEeecCCCCChhHHHHHHHHHHH--------Hhhhh----ccCCceEEe----------ecceeEEEEEeCh--HHHH
Confidence 4578999999999999999976210 01111 112223432 2346789999999 4433
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCCC
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPGA 218 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~ 218 (646)
.+......+|.++|++|+.-|..-.|.+.+..+..+++| ++-|++..|+-..
T Consensus 126 -~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~ 178 (1077)
T COG5192 126 -QMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKN 178 (1077)
T ss_pred -HHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccC
Confidence 344566779999999999999999999999999999999 7889999998654
No 359
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.05 E-value=5.8e-06 Score=78.56 Aligned_cols=44 Identities=23% Similarity=0.328 Sum_probs=31.7
Q ss_pred eeEeecCCCCCchHHhhhhhccccccCCCCCceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 54 IFRVSCQSQATDAELATRVGQDRLLKVPASNIRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 54 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
.+.+|+..+.+...+..... . ..++++|++|+|||||+|+|+..
T Consensus 15 v~~~S~~~~~g~~~l~~~l~----------~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 15 VFFISAKTGEGIEELKELLK----------G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp EEE-BTTTTTTHHHHHHHHT----------T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEeCCCCcCHHHHHHHhc----------C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 45566666666666655431 1 47899999999999999999874
No 360
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.05 E-value=2e-05 Score=83.61 Aligned_cols=157 Identities=20% Similarity=0.184 Sum_probs=83.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCcccccccccc--cccc--------c-cccccceeeeeeEEEEE-----EE--
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQF--LDNM--------D-LERERGITIKLQAARMR-----YV-- 145 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~--~d~~--------~-~e~e~giTi~~~~~~~~-----~~-- 145 (646)
....++++|++|+||||++..|....... +..-.+ .|.. . ....+++.+..+..... +.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~---g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l 189 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ---GKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAI 189 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHH
Confidence 34678999999999999999987643211 100000 0110 0 01122332211100000 00
Q ss_pred --ecCCCeEEEEEeCCCCccchh----hHhhhhh--------hccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEe
Q 043429 146 --FENEPFCLNLIDTPGHVDFSY----EVSRSLA--------ACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLN 211 (646)
Q Consensus 146 --~~~~~~~l~liDTPG~~df~~----~~~~~l~--------~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViN 211 (646)
....++.+.||||||...... +.....+ ..+..+||+|++.+..... ......+.--+.-+|+|
T Consensus 190 ~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~--~a~~f~~~~~~~giIlT 267 (318)
T PRK10416 190 QAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS--QAKAFHEAVGLTGIILT 267 (318)
T ss_pred HHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH--HHHHHHhhCCCCEEEEE
Confidence 012468899999999865332 2333222 3567899999997643322 21111111224578999
Q ss_pred ccCCCCCCchHHHHHHHHHhCCCcccccccccccccchhHH
Q 043429 212 KIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGINEI 252 (646)
Q Consensus 212 KiDl~~~~~~~~~~el~~~l~~~~~~i~~vSAk~g~GV~eL 252 (646)
|+|.. +..-.+... ...++. |+.+++ +|+++++|
T Consensus 268 KlD~t-~~~G~~l~~-~~~~~~---Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 268 KLDGT-AKGGVVFAI-ADELGI---PIKFIG--VGEGIDDL 301 (318)
T ss_pred CCCCC-CCccHHHHH-HHHHCC---CEEEEe--CCCChhhC
Confidence 99943 333333333 334455 477777 88888665
No 361
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.03 E-value=4.5e-05 Score=84.65 Aligned_cols=156 Identities=18% Similarity=0.195 Sum_probs=90.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEec--CCCeEEEEEeCCCCcc
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFE--NEPFCLNLIDTPGHVD 163 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~--~~~~~l~liDTPG~~d 163 (646)
++|.|+|..++|||||+.+|.... +...|. ...........+ +...++++|-..|-..
T Consensus 26 k~vlvlG~~~~GKttli~~L~~~e------------------~~~~~~--aLeYty~~v~d~~~dd~~rl~vw~L~g~~~ 85 (472)
T PF05783_consen 26 KSVLVLGDKGSGKTTLIARLQGIE------------------DPKKGL--ALEYTYLDVKDEDRDDLARLNVWELDGDPS 85 (472)
T ss_pred ceEEEEeCCCCchHHHHHHhhccC------------------CCCCCc--ccceEEEeeccCcCCcCceeeEEEcCCCcc
Confidence 689999999999999999985411 111222 111111111111 1335678887776544
Q ss_pred chhhHhhhhhhc----cceEEEEeCCCCccHh-hHHHHHHHHH-------------------------------------
Q 043429 164 FSYEVSRSLAAC----EGALLVVDASQGVEAQ-TLANVYLALE------------------------------------- 201 (646)
Q Consensus 164 f~~~~~~~l~~a----d~~IlVvDa~~g~~~q-t~~~~~~~~~------------------------------------- 201 (646)
+...+.-.+... -.+|+|+|-+++.... .+..|...++
T Consensus 86 ~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~ 165 (472)
T PF05783_consen 86 HSDLLKFALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSG 165 (472)
T ss_pred hHhHhcccCCcccccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 554444333321 2578899999875321 1222211110
Q ss_pred -----------------------------cCCCeEEEEeccCCCC-----CCc-----hHHHHHHHHHhCCCcccccccc
Q 043429 202 -----------------------------NNLEIIPVLNKIDLPG-----AEP-----SRVAREIEEVIGLDCTNAILCS 242 (646)
Q Consensus 202 -----------------------------~~~piIvViNKiDl~~-----~~~-----~~~~~el~~~l~~~~~~i~~vS 242 (646)
.++|++||++|+|... .++ +-+.+.++...=...+..|++|
T Consensus 166 s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts 245 (472)
T PF05783_consen 166 SPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTS 245 (472)
T ss_pred CcccccccccccccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEee
Confidence 0479999999999532 111 1222333333212233478999
Q ss_pred cccccchhHHHHHHHHhCC
Q 043429 243 AKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 243 Ak~g~GV~eLl~~I~~~ip 261 (646)
++...+++-|+.+|.+++.
T Consensus 246 ~~~~~n~~~L~~yi~h~l~ 264 (472)
T PF05783_consen 246 VKEEKNLDLLYKYILHRLY 264 (472)
T ss_pred ccccccHHHHHHHHHHHhc
Confidence 9999999999999988764
No 362
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.01 E-value=1.4e-05 Score=74.50 Aligned_cols=79 Identities=19% Similarity=0.124 Sum_probs=54.1
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc--CCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcccccccccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN--NLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAK 244 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~--~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~~vSAk 244 (646)
+..+++..+|++++|+|++++...+........... ++|+++|+||+|+.... . ..++.+.+.....+++++||+
T Consensus 4 ~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~--~-~~~~~~~~~~~~~~ii~iSa~ 80 (141)
T cd01857 4 QLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEE--Q-RKAWAEYFKKEGIVVVFFSAL 80 (141)
T ss_pred HHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHH--H-HHHHHHHHHhcCCeEEEEEec
Confidence 456789999999999999988776654433333333 89999999999985322 1 223333332112458999999
Q ss_pred cccc
Q 043429 245 EGIG 248 (646)
Q Consensus 245 ~g~G 248 (646)
+|.+
T Consensus 81 ~~~~ 84 (141)
T cd01857 81 KENA 84 (141)
T ss_pred CCCc
Confidence 8875
No 363
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.01 E-value=9.6e-06 Score=84.99 Aligned_cols=84 Identities=23% Similarity=0.277 Sum_probs=61.0
Q ss_pred hhhhccceEEEEeCCCCc-cHhhHHHHHHH-HHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcccccccccccccc
Q 043429 171 SLAACEGALLVVDASQGV-EAQTLANVYLA-LENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIG 248 (646)
Q Consensus 171 ~l~~ad~~IlVvDa~~g~-~~qt~~~~~~~-~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~~vSAk~g~G 248 (646)
.++.+|.+++|+|+.++. +...+..|... ...++|+++|+||+|+...............++ .+++++||++|.|
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g---~~v~~vSA~~g~g 151 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALG---YPVLAVSAKTGEG 151 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCC---CeEEEEECCCCcc
Confidence 477899999999999887 66666666554 446899999999999965421111112222234 3689999999999
Q ss_pred hhHHHHHHH
Q 043429 249 INEILNAIV 257 (646)
Q Consensus 249 V~eLl~~I~ 257 (646)
+++|++.|.
T Consensus 152 i~~L~~~L~ 160 (287)
T cd01854 152 LDELREYLK 160 (287)
T ss_pred HHHHHhhhc
Confidence 999988774
No 364
>PRK12289 GTPase RsgA; Reviewed
Probab=97.99 E-value=1.2e-05 Score=86.33 Aligned_cols=85 Identities=24% Similarity=0.382 Sum_probs=59.5
Q ss_pred hhhhhccceEEEEeCCCCc-cHhhHHHHHH-HHHcCCCeEEEEeccCCCCCCc-hHHHHHHHHHhCCCcccccccccccc
Q 043429 170 RSLAACEGALLVVDASQGV-EAQTLANVYL-ALENNLEIIPVLNKIDLPGAEP-SRVAREIEEVIGLDCTNAILCSAKEG 246 (646)
Q Consensus 170 ~~l~~ad~~IlVvDa~~g~-~~qt~~~~~~-~~~~~~piIvViNKiDl~~~~~-~~~~~el~~~l~~~~~~i~~vSAk~g 246 (646)
.+++.+|.+++|+|+.++. ....+..|.. +...++|+++|+||+||..... ....+.+ +.+|+ +++++||++|
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~-~~~g~---~v~~iSA~tg 160 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRL-QQWGY---QPLFISVETG 160 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHH-HhcCC---eEEEEEcCCC
Confidence 4688999999999998654 4434444443 3446899999999999964321 1111122 23444 4899999999
Q ss_pred cchhHHHHHHHH
Q 043429 247 IGINEILNAIVK 258 (646)
Q Consensus 247 ~GV~eLl~~I~~ 258 (646)
.|+++|++.+..
T Consensus 161 ~GI~eL~~~L~~ 172 (352)
T PRK12289 161 IGLEALLEQLRN 172 (352)
T ss_pred CCHHHHhhhhcc
Confidence 999999998854
No 365
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.98 E-value=2.1e-05 Score=81.64 Aligned_cols=95 Identities=22% Similarity=0.240 Sum_probs=55.6
Q ss_pred CCeEEEEEeCCCCccchhhH----hh---hhh-----hccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCC
Q 043429 149 EPFCLNLIDTPGHVDFSYEV----SR---SLA-----ACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP 216 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~----~~---~l~-----~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~ 216 (646)
.++.+.||||||........ .. ... .+|..+||+|++.+.. +........+.--+.-+|+||+|..
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~f~~~~~~~g~IlTKlDe~ 230 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQN--ALEQAKVFNEAVGLTGIILTKLDGT 230 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHH--HHHHHHHHHhhCCCCEEEEEccCCC
Confidence 46889999999986533322 21 111 2789999999986533 3322222222112468899999964
Q ss_pred CCCchHHHHHHHHHhCCCcccccccccccccchhHH
Q 043429 217 GAEPSRVAREIEEVIGLDCTNAILCSAKEGIGINEI 252 (646)
Q Consensus 217 ~~~~~~~~~el~~~l~~~~~~i~~vSAk~g~GV~eL 252 (646)
.. .-... .+....+. |+.+++ +|++++++
T Consensus 231 ~~-~G~~l-~~~~~~~~---Pi~~~~--~Gq~~~dl 259 (272)
T TIGR00064 231 AK-GGIIL-SIAYELKL---PIKFIG--VGEKIDDL 259 (272)
T ss_pred CC-ccHHH-HHHHHHCc---CEEEEe--CCCChHhC
Confidence 32 22222 33334454 467777 78887665
No 366
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.97 E-value=1.2e-05 Score=77.67 Aligned_cols=56 Identities=21% Similarity=0.376 Sum_probs=41.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH 161 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~ 161 (646)
..+++++|.+|+|||||+|+|+.... ......+|+|...+.... +..+.++||||.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~--------------~~~~~~pg~T~~~~~~~~-------~~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRA--------------CNVGATPGVTKSMQEVHL-------DKKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccc--------------ceecCCCCeEcceEEEEe-------CCCEEEEECcCC
Confidence 46899999999999999999986321 123456788887654432 235789999994
No 367
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.96 E-value=1.3e-05 Score=84.06 Aligned_cols=100 Identities=24% Similarity=0.312 Sum_probs=69.5
Q ss_pred CCCCcc-chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcc
Q 043429 158 TPGHVD-FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCT 236 (646)
Q Consensus 158 TPG~~d-f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~ 236 (646)
.|||.. -..++...+..+|.+|+|+|+..+.+..... +.... .+.|+++|+||+|+... .. .+...+.+.-...
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~-l~~~~-~~kp~iiVlNK~DL~~~--~~-~~~~~~~~~~~~~ 81 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPM-IDKII-GNKPRLLILNKSDLADP--EV-TKKWIEYFEEQGI 81 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChh-HHHHh-CCCCEEEEEEchhcCCH--HH-HHHHHHHHHHcCC
Confidence 588864 3456778999999999999998876654432 22222 38999999999998532 11 1222222211123
Q ss_pred cccccccccccchhHHHHHHHHhCCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+++.+||+++.|+++|++.+.+.++.
T Consensus 82 ~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 82 KALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHH
Confidence 57999999999999999999887754
No 368
>PRK12288 GTPase RsgA; Reviewed
Probab=97.94 E-value=2.5e-05 Score=83.87 Aligned_cols=88 Identities=23% Similarity=0.265 Sum_probs=63.3
Q ss_pred hhhccceEEEEeCCCCccHhhHHHHHHHHH-cCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcccccccccccccchh
Q 043429 172 LAACEGALLVVDASQGVEAQTLANVYLALE-NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGIN 250 (646)
Q Consensus 172 l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~~vSAk~g~GV~ 250 (646)
.+++|.+++|++.....++..+..|..... .++|+++|+||+|+..........+..+.+.....+++++||++|.|++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~Gid 197 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEGLE 197 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcCHH
Confidence 467899999999988888888777765444 5899999999999965432122222222221112368999999999999
Q ss_pred HHHHHHHHh
Q 043429 251 EILNAIVKR 259 (646)
Q Consensus 251 eLl~~I~~~ 259 (646)
+|+++|...
T Consensus 198 eL~~~L~~k 206 (347)
T PRK12288 198 ELEAALTGR 206 (347)
T ss_pred HHHHHHhhC
Confidence 999998653
No 369
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.94 E-value=1.6e-05 Score=71.30 Aligned_cols=109 Identities=18% Similarity=0.061 Sum_probs=67.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccc-eeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERG-ITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~g-iTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
+++++|+.|+|||+|+.++..... +.... .|+. +.
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~-----------------~~~~~~~t~~---------------------------~~ 37 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPF-----------------DYVPTVFTIG---------------------------ID 37 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCc-----------------cccCceehhh---------------------------hh
Confidence 789999999999999999854211 00000 0111 11
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHH----HcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCccccccc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILC 241 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~----~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~~v 241 (646)
.....+.+.++.+++|+|.+...+.... |...+ +.++|.++++||.|+.... ...++. + .+++++
T Consensus 38 ~~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~--~~~~~~----~---~~~~~~ 106 (124)
T smart00010 38 VYDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEER--QVATEE----G---LEFAET 106 (124)
T ss_pred hccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhC--cCCHHH----H---HHHHHH
Confidence 1223456677889888998877665443 43322 2357789999999984322 111111 1 136789
Q ss_pred ccccccchh
Q 043429 242 SAKEGIGIN 250 (646)
Q Consensus 242 SAk~g~GV~ 250 (646)
|+++|.|+.
T Consensus 107 s~~~~~~~~ 115 (124)
T smart00010 107 SAKTPEEGE 115 (124)
T ss_pred hCCCcchhh
Confidence 999999984
No 370
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=7.5e-05 Score=83.72 Aligned_cols=159 Identities=20% Similarity=0.147 Sum_probs=90.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCcccccc------------c-cc--cccccccccccce--------------ee
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREM------------K-EQ--FLDNMDLERERGI--------------TI 135 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~------------~-~~--~~d~~~~e~e~gi--------------Ti 135 (646)
..+|+|.|..++||||++|+++...-.....+. + .. .++. ..|...-. +-
T Consensus 109 ~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~-s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 109 HMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEG-SEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred ccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCC-CcccccHHHHhHHHHhcCcccccC
Confidence 469999999999999999999984311111100 0 00 0010 00000000 11
Q ss_pred eeeEEEEEEEecC---CCeEEEEEeCCCCcc---chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEE
Q 043429 136 KLQAARMRYVFEN---EPFCLNLIDTPGHVD---FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIP 208 (646)
Q Consensus 136 ~~~~~~~~~~~~~---~~~~l~liDTPG~~d---f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIv 208 (646)
......+.|+.+. -.-.+.++|.||..- +...+......+|++|||+.+.+..+......+..+-+. +| +++
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-KpniFI 266 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-KPNIFI 266 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-CCcEEE
Confidence 1223334444221 012578999999853 445566677789999999999876654444444444444 66 788
Q ss_pred EEeccCCCCCCc---hHHHHHHHHHhCC-----Ccccccccccccc
Q 043429 209 VLNKIDLPGAEP---SRVAREIEEVIGL-----DCTNAILCSAKEG 246 (646)
Q Consensus 209 ViNKiDl~~~~~---~~~~~el~~~l~~-----~~~~i~~vSAk~g 246 (646)
+.||+|.....+ +.+.+++.+ ++. ..+-++++||+.-
T Consensus 267 lnnkwDasase~ec~e~V~~Qi~e-L~v~~~~eA~DrvfFVS~~e~ 311 (749)
T KOG0448|consen 267 LNNKWDASASEPECKEDVLKQIHE-LSVVTEKEAADRVFFVSAKEV 311 (749)
T ss_pred EechhhhhcccHHHHHHHHHHHHh-cCcccHhhhcCeeEEEeccch
Confidence 889999865543 334444432 221 1235899998843
No 371
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.92 E-value=1.2e-05 Score=80.34 Aligned_cols=149 Identities=21% Similarity=0.291 Sum_probs=92.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..++.++|-+.+|||||+..|...... +..--++|...-.....|+ +-++++.|.||..+-
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~---------------vasyefttl~~vpG~~~y~----gaKiqlldlpgiieg 119 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSE---------------VAAYEFTTLTTVPGVIRYK----GAKIQLLDLPGIIEG 119 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCc---------------cccccceeEEEecceEecc----ccceeeecCcchhcc
Confidence 358999999999999999888652111 1111122333223334444 788999999998642
Q ss_pred -------hhhHhhhhhhccceEEEEeCCCCccHhhH-----------------------------------------HHH
Q 043429 165 -------SYEVSRSLAACEGALLVVDASQGVEAQTL-----------------------------------------ANV 196 (646)
Q Consensus 165 -------~~~~~~~l~~ad~~IlVvDa~~g~~~qt~-----------------------------------------~~~ 196 (646)
...+....+.|+.+++|.|+-.+.+-..+ ...
T Consensus 120 akdgkgrg~qviavartcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsi 199 (358)
T KOG1487|consen 120 AKDGKGRGKQVIAVARTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSI 199 (358)
T ss_pred cccCCCCccEEEEEeecccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHH
Confidence 23455677889999999998876532111 000
Q ss_pred HHHH----------------------Hc---CCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcccccccccccccchhH
Q 043429 197 YLAL----------------------EN---NLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGINE 251 (646)
Q Consensus 197 ~~~~----------------------~~---~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~~vSAk~g~GV~e 251 (646)
.... +. -+|.+.++||+|-..- +++.-.+..+ ..+++||-++.|+++
T Consensus 200 l~eyR~hsAdi~Lr~DaT~DdLIdvVegnr~yVp~iyvLNkIdsISi------EELdii~~ip--havpISA~~~wn~d~ 271 (358)
T KOG1487|consen 200 LSEYRIHSADIALRFDATADDLIDVVEGNRIYVPCIYVLNKIDSISI------EELDIIYTIP--HAVPISAHTGWNFDK 271 (358)
T ss_pred HHHhhhcchheeeecCcchhhhhhhhccCceeeeeeeeecccceeee------eccceeeecc--ceeecccccccchHH
Confidence 0000 00 2677888888884322 1221122222 478999999999999
Q ss_pred HHHHHHHhC
Q 043429 252 ILNAIVKRI 260 (646)
Q Consensus 252 Ll~~I~~~i 260 (646)
+++.+-+++
T Consensus 272 lL~~mweyL 280 (358)
T KOG1487|consen 272 LLEKMWEYL 280 (358)
T ss_pred HHHHHhhcc
Confidence 999988765
No 372
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.90 E-value=1.8e-05 Score=73.79 Aligned_cols=55 Identities=24% Similarity=0.341 Sum_probs=37.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
+++++|.+|+|||||+|+|+..... ......|.|....... .+ -.+.||||||..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~--------------~~~~~~~~~~~~~~~~----~~---~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKV--------------SVSATPGKTKHFQTIF----LT---PTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce--------------eeCCCCCcccceEEEE----eC---CCEEEEECCCcC
Confidence 7899999999999999999863211 1233445555543322 21 257899999974
No 373
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.87 E-value=5.7e-05 Score=72.86 Aligned_cols=88 Identities=20% Similarity=0.164 Sum_probs=56.0
Q ss_pred ceeEeecCCCCCchHHhhhhhccc------cccCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccc
Q 043429 53 CIFRVSCQSQATDAELATRVGQDR------LLKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMD 126 (646)
Q Consensus 53 ~~~~~s~~~~~~~~~~~~~~~~~~------~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~ 126 (646)
....+|+..+.+............ ...-......+++++|.+|+|||||+++|+.... ..
T Consensus 77 ~vi~iSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~--------------~~ 142 (171)
T cd01856 77 KVLFVNAKSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKV--------------AK 142 (171)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCc--------------ee
Confidence 457788888888777666553321 0001122346899999999999999999986321 11
Q ss_pred cccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC
Q 043429 127 LERERGITIKLQAARMRYVFENEPFCLNLIDTPGH 161 (646)
Q Consensus 127 ~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~ 161 (646)
.....|+|...+...+ ...+.+|||||.
T Consensus 143 ~~~~~~~T~~~~~~~~-------~~~~~~iDtpG~ 170 (171)
T cd01856 143 VGNKPGVTKGIQWIKI-------SPGIYLLDTPGI 170 (171)
T ss_pred ecCCCCEEeeeEEEEe-------cCCEEEEECCCC
Confidence 2334456666544332 145789999996
No 374
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.87 E-value=3.2e-05 Score=83.65 Aligned_cols=97 Identities=27% Similarity=0.242 Sum_probs=66.7
Q ss_pred CccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC--chHHHHH---HHHHhCCCc
Q 043429 161 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE--PSRVARE---IEEVIGLDC 235 (646)
Q Consensus 161 ~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~--~~~~~~e---l~~~l~~~~ 235 (646)
.++|......+...++++++|+|+.+....-. ..+.. ...+.|+++|+||+|+.... .+...+. ..+..++..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~-~~l~~-~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~ 127 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLI-PELKR-FVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKP 127 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCcc-HHHHH-HhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCc
Confidence 45677777778889999999999976542211 11111 12378999999999985432 2222222 233455544
Q ss_pred ccccccccccccchhHHHHHHHHh
Q 043429 236 TNAILCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~ 259 (646)
..++.+||++|.|++++++.|.+.
T Consensus 128 ~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 128 VDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred CcEEEecCCCCCCHHHHHHHHHHH
Confidence 468999999999999999999765
No 375
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.86 E-value=4.4e-05 Score=79.57 Aligned_cols=89 Identities=19% Similarity=0.161 Sum_probs=55.0
Q ss_pred ceeEeecCCCCCchHHhhhhhccccccC-------CCCCceeEEEEcCCCCCHHHHHHHHHHhcCCcccccccccccccc
Q 043429 53 CIFRVSCQSQATDAELATRVGQDRLLKV-------PASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNM 125 (646)
Q Consensus 53 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~-------~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~ 125 (646)
....+|+..+.+...+...+........ ......+++++|.+|+|||||+|+|..... .
T Consensus 79 ~vi~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~--------------~ 144 (276)
T TIGR03596 79 KALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKV--------------A 144 (276)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCc--------------c
Confidence 3467788877776666544322110000 012346899999999999999999976321 1
Q ss_pred ccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 126 DLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 126 ~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
......|+|...+...+ +..+.+|||||..
T Consensus 145 ~~~~~~g~T~~~~~~~~-------~~~~~l~DtPG~~ 174 (276)
T TIGR03596 145 KVGNRPGVTKGQQWIKL-------SDGLELLDTPGIL 174 (276)
T ss_pred ccCCCCCeecceEEEEe-------CCCEEEEECCCcc
Confidence 12345677776654332 1357899999983
No 376
>PRK00098 GTPase RsgA; Reviewed
Probab=97.86 E-value=2.8e-05 Score=81.93 Aligned_cols=81 Identities=35% Similarity=0.409 Sum_probs=56.8
Q ss_pred hhhhccceEEEEeCCCCccHhh-HHHHHH-HHHcCCCeEEEEeccCCCCCCchHHHHHHH---HHhCCCccccccccccc
Q 043429 171 SLAACEGALLVVDASQGVEAQT-LANVYL-ALENNLEIIPVLNKIDLPGAEPSRVAREIE---EVIGLDCTNAILCSAKE 245 (646)
Q Consensus 171 ~l~~ad~~IlVvDa~~g~~~qt-~~~~~~-~~~~~~piIvViNKiDl~~~~~~~~~~el~---~~l~~~~~~i~~vSAk~ 245 (646)
.++.+|.+++|+|++++..... +..|.. +...++|+++|+||+|+... .+. ..++. +.++. +++++||++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~-~~~-~~~~~~~~~~~g~---~v~~vSA~~ 151 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDD-LEE-ARELLALYRAIGY---DVLELSAKE 151 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCC-HHH-HHHHHHHHHHCCC---eEEEEeCCC
Confidence 3688999999999987644333 344443 34568999999999999532 222 22222 22343 589999999
Q ss_pred ccchhHHHHHH
Q 043429 246 GIGINEILNAI 256 (646)
Q Consensus 246 g~GV~eLl~~I 256 (646)
|.|+++|++.+
T Consensus 152 g~gi~~L~~~l 162 (298)
T PRK00098 152 GEGLDELKPLL 162 (298)
T ss_pred CccHHHHHhhc
Confidence 99999999876
No 377
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.83 E-value=5.7e-05 Score=71.45 Aligned_cols=85 Identities=12% Similarity=0.079 Sum_probs=52.3
Q ss_pred CCCCCEEEeeecccccccCCCcCccchhhcccccccccccccccccceeEeecCCCCCchHHhhhhhccccccCCCCCce
Q 043429 7 SSPAPVLSIKHQTFATLKKPHISSLSHFLSKSHRRCNYSLSISKHSCIFRVSCQSQATDAELATRVGQDRLLKVPASNIR 86 (646)
Q Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~~s~~~~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ir 86 (646)
..+.|.+.+.++.+... . .....+. . .........+.+|+..+.+...+...+..... ......
T Consensus 39 ~~~~p~iiv~NK~Dl~~--~--~~~~~~~-~--------~~~~~~~~~~~iSa~~~~gi~~L~~~l~~~~~---~~~~~~ 102 (156)
T cd01859 39 ELGKKLLIVLNKADLVP--K--EVLEKWK-S--------IKESEGIPVVYVSAKERLGTKILRRTIKELAK---IDGKEG 102 (156)
T ss_pred hCCCcEEEEEEhHHhCC--H--HHHHHHH-H--------HHHhCCCcEEEEEccccccHHHHHHHHHHHHh---hcCCCc
Confidence 34678888888888521 1 0111111 0 00001123577888888888777766533211 112346
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
+++++|.+|+|||||+++|..
T Consensus 103 ~~~~ig~~~~Gkssl~~~l~~ 123 (156)
T cd01859 103 KVGVVGYPNVGKSSIINALKG 123 (156)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 889999999999999999975
No 378
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.82 E-value=4.6e-05 Score=79.91 Aligned_cols=89 Identities=20% Similarity=0.135 Sum_probs=55.9
Q ss_pred eeEeecCCCCCchHHhhhhhccc---cc----cCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccc
Q 043429 54 IFRVSCQSQATDAELATRVGQDR---LL----KVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMD 126 (646)
Q Consensus 54 ~~~~s~~~~~~~~~~~~~~~~~~---~~----~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~ 126 (646)
...+|+..+.+.......+.... .. .-......+++++|.+|+|||||+|+|+.... ..
T Consensus 83 vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~--------------~~ 148 (287)
T PRK09563 83 ALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKI--------------AK 148 (287)
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCc--------------cc
Confidence 46677777777666554432211 00 00112346899999999999999999986321 12
Q ss_pred cccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 127 LERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 127 ~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
.....|+|...+.... +..+.||||||...
T Consensus 149 ~~~~~g~T~~~~~~~~-------~~~~~l~DtPGi~~ 178 (287)
T PRK09563 149 TGNRPGVTKAQQWIKL-------GKGLELLDTPGILW 178 (287)
T ss_pred cCCCCCeEEEEEEEEe-------CCcEEEEECCCcCC
Confidence 3345678877654322 23578999999864
No 379
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.82 E-value=3.9e-05 Score=81.63 Aligned_cols=57 Identities=26% Similarity=0.343 Sum_probs=44.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
.++.++|-+|+|||||+|+|+.... ....+.+|+|...+...+ ...+.|+||||..-
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~--------------~~~s~~PG~Tk~~q~i~~-------~~~i~LlDtPGii~ 189 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKV--------------AKTSNRPGTTKGIQWIKL-------DDGIYLLDTPGIIP 189 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccc--------------eeeCCCCceecceEEEEc-------CCCeEEecCCCcCC
Confidence 5699999999999999999988533 224556799988776554 34478999999753
No 380
>PRK12288 GTPase RsgA; Reviewed
Probab=97.80 E-value=5.6e-05 Score=81.14 Aligned_cols=88 Identities=20% Similarity=0.231 Sum_probs=53.0
Q ss_pred ceeEeecCCCCCchHHhhhhhccccccCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccc
Q 043429 53 CIFRVSCQSQATDAELATRVGQDRLLKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERG 132 (646)
Q Consensus 53 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~g 132 (646)
..+.+|+..+.+...+...+.. ..++|+|.+|+|||||+|+|+....... ..+. ....+-+.
T Consensus 184 ~v~~vSA~tg~GideL~~~L~~-----------ki~~~vG~sgVGKSTLiN~Ll~~~~~~t-----~~is--~~~~rGrH 245 (347)
T PRK12288 184 RVLMVSSHTGEGLEELEAALTG-----------RISIFVGQSGVGKSSLINALLPEAEILV-----GDVS--DNSGLGQH 245 (347)
T ss_pred eEEEEeCCCCcCHHHHHHHHhh-----------CCEEEECCCCCCHHHHHHHhccccceee-----cccc--CcCCCCcC
Confidence 4577888888887777765421 1379999999999999999986321110 0000 01122333
Q ss_pred eeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 133 ITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 133 iTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
+|.......+ .++. .|+||||...|.
T Consensus 246 TT~~~~l~~l----~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 246 TTTAARLYHF----PHGG---DLIDSPGVREFG 271 (347)
T ss_pred ceeeEEEEEe----cCCC---EEEECCCCCccc
Confidence 4544433322 2222 499999998765
No 381
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.75 E-value=0.00011 Score=70.12 Aligned_cols=64 Identities=22% Similarity=0.205 Sum_probs=38.1
Q ss_pred CeEEEEEeCCCCccchhhHh--------hhhhhccceEEEEeCCCCccHh-hHHHHHHHHHcCCCeEEEEeccCC
Q 043429 150 PFCLNLIDTPGHVDFSYEVS--------RSLAACEGALLVVDASQGVEAQ-TLANVYLALENNLEIIPVLNKIDL 215 (646)
Q Consensus 150 ~~~l~liDTPG~~df~~~~~--------~~l~~ad~~IlVvDa~~g~~~q-t~~~~~~~~~~~~piIvViNKiDl 215 (646)
.....++||||..+-..... .....+|.++.++|+....... +...+...++ -.=++|+||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~--~ad~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIA--FADRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHH--HCCEEEEecccC
Confidence 46678999999876333222 2334588999999987643321 1112211111 123779999996
No 382
>PRK14974 cell division protein FtsY; Provisional
Probab=97.73 E-value=0.0002 Score=76.43 Aligned_cols=95 Identities=21% Similarity=0.186 Sum_probs=54.6
Q ss_pred CeEEEEEeCCCCccchh----hHhhhh--hhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHH
Q 043429 150 PFCLNLIDTPGHVDFSY----EVSRSL--AACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRV 223 (646)
Q Consensus 150 ~~~l~liDTPG~~df~~----~~~~~l--~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~ 223 (646)
++.+.||||||...... +..... ...|..+||+|++.|...... ...-.+.--.--+++||+|... ..-..
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~--a~~f~~~~~~~giIlTKlD~~~-~~G~~ 298 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQ--AREFNEAVGIDGVILTKVDADA-KGGAA 298 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHH--HHHHHhcCCCCEEEEeeecCCC-CccHH
Confidence 56789999999864332 222222 246888999999876432221 1111111122578899999743 22222
Q ss_pred HHHHHHHhCCCcccccccccccccchhHHH
Q 043429 224 AREIEEVIGLDCTNAILCSAKEGIGINEIL 253 (646)
Q Consensus 224 ~~el~~~l~~~~~~i~~vSAk~g~GV~eLl 253 (646)
.... ...+. |+.+++ +|++++++.
T Consensus 299 ls~~-~~~~~---Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 299 LSIA-YVIGK---PILFLG--VGQGYDDLI 322 (336)
T ss_pred HHHH-HHHCc---CEEEEe--CCCChhhcc
Confidence 2222 23444 477777 799987753
No 383
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.0002 Score=74.90 Aligned_cols=134 Identities=17% Similarity=0.156 Sum_probs=81.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccc------cccccccccccccccceeeeeeEEEEEEE-e---------
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE------MKEQFLDNMDLERERGITIKLQAARMRYV-F--------- 146 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~------~~~~~~d~~~~e~e~giTi~~~~~~~~~~-~--------- 146 (646)
+..+-|.++|.-..||||+++.|++..-.-.+.+ .-..+|...+.+.-.|.+.-.+.. ..+. .
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~-~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAK-KPFRGLNKFGNAFLN 134 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCC-CchhhhhhhHHHHHH
Confidence 3446799999999999999999998432211111 011122222222223333322210 0010 0
Q ss_pred -------cC-CCeEEEEEeCCCCc-----------cchhhHhhhhhhccceEEEEeCCCC-ccHhhHHHHHHHHHcCCCe
Q 043429 147 -------EN-EPFCLNLIDTPGHV-----------DFSYEVSRSLAACEGALLVVDASQG-VEAQTLANVYLALENNLEI 206 (646)
Q Consensus 147 -------~~-~~~~l~liDTPG~~-----------df~~~~~~~l~~ad~~IlVvDa~~g-~~~qt~~~~~~~~~~~~pi 206 (646)
.+ ---.++++||||.- ||.....-+...||.++|++|+..- ++.++.+.+....-+.=.+
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edki 214 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKI 214 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCccee
Confidence 00 01358999999963 5666677788899999999999864 4555555555555566678
Q ss_pred EEEEeccCCCC
Q 043429 207 IPVLNKIDLPG 217 (646)
Q Consensus 207 IvViNKiDl~~ 217 (646)
-||+||.|..+
T Consensus 215 RVVLNKADqVd 225 (532)
T KOG1954|consen 215 RVVLNKADQVD 225 (532)
T ss_pred EEEeccccccC
Confidence 89999999754
No 384
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.72 E-value=0.00032 Score=77.61 Aligned_cols=162 Identities=23% Similarity=0.235 Sum_probs=100.4
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCC
Q 043429 81 PASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPG 160 (646)
Q Consensus 81 ~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG 160 (646)
...++.+.-++|..++|||.|++++++.. + .+..........++.. ....+....+.|-|.+-
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~--~---------~~~~~~~~~~~~avn~------v~~~g~~k~LiL~ei~~ 483 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRS--M---------SDNNTGTTKPRYAVNS------VEVKGQQKYLILREIGE 483 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccc--c---------ccccccCCCCceeeee------eeeccccceEEEeecCc
Confidence 33456788999999999999999998721 1 1111011111112211 11123445555666554
Q ss_pred CccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHH--HcCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcc
Q 043429 161 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL--ENNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCT 236 (646)
Q Consensus 161 ~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~--~~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~ 236 (646)
. +........ ..||.+.+++|.++..++.-....+... ....|+++|..|+|+.... ..-.-.++...++++.
T Consensus 484 ~-~~~~l~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~- 560 (625)
T KOG1707|consen 484 D-DQDFLTSKE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPP- 560 (625)
T ss_pred c-ccccccCcc-ceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchhhhccCCChHHHHHhcCCCC-
Confidence 3 212222222 7899999999999888887765544332 2689999999999997654 2222267777788764
Q ss_pred cccccccccccchhHHHHHHHHhCCCCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIPPPS 264 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip~P~ 264 (646)
-+.+|.++ .+=.++|..|+.....|.
T Consensus 561 -P~~~S~~~-~~s~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 561 -PIHISSKT-LSSNELFIKLATMAQYPH 586 (625)
T ss_pred -CeeeccCC-CCCchHHHHHHHhhhCCC
Confidence 56667764 222789999888766554
No 385
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.71 E-value=0.00028 Score=68.36 Aligned_cols=82 Identities=26% Similarity=0.244 Sum_probs=55.9
Q ss_pred CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHH
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIE 228 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~ 228 (646)
..+.+.++|||+... ......+..+|.+++++..+..........+....+.+.|+.+|+||+|.......+ ..+..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~~~~~~~-~~~~~ 167 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLNDEIAEE-IEDYC 167 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHH-HHHHH
Confidence 478899999997643 345567889999999999986544444455555556788999999999975433222 23333
Q ss_pred HHhCC
Q 043429 229 EVIGL 233 (646)
Q Consensus 229 ~~l~~ 233 (646)
+.+++
T Consensus 168 ~~~~~ 172 (179)
T cd03110 168 EEEGI 172 (179)
T ss_pred HHcCC
Confidence 44444
No 386
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.70 E-value=0.00014 Score=68.66 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=40.0
Q ss_pred CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccC
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKID 214 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiD 214 (646)
.++.+.||||||.. ......+..+|-+++|.....+.....++. ......=++++||+|
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~----~~~~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGDDIQAIKA----GIMEIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchhHHHHhhh----hHhhhcCEEEEeCCC
Confidence 36889999999964 333458899999999998874333332222 112233489999998
No 387
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=8.7e-05 Score=80.04 Aligned_cols=133 Identities=17% Similarity=0.073 Sum_probs=67.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccc-cccccccccccc---ccc------ccceeeeeeEEEEEEE---ecCCCe
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQK-REMKEQFLDNMD---LER------ERGITIKLQAARMRYV---FENEPF 151 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~-~~~~~~~~d~~~---~e~------e~giTi~~~~~~~~~~---~~~~~~ 151 (646)
-..++++|++|+||||++..|......... ....--..|.+. .|. ..|+.+......-.+. ..-.++
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 458999999999999999999863211000 000000011110 011 1122211100000000 001356
Q ss_pred EEEEEeCCCCccchh---hHhhhhhhccc---eEEEEeCCCCccHhhHHHHHHHHHcCC-------CeEEEEeccCCCC
Q 043429 152 CLNLIDTPGHVDFSY---EVSRSLAACEG---ALLVVDASQGVEAQTLANVYLALENNL-------EIIPVLNKIDLPG 217 (646)
Q Consensus 152 ~l~liDTPG~~df~~---~~~~~l~~ad~---~IlVvDa~~g~~~qt~~~~~~~~~~~~-------piIvViNKiDl~~ 217 (646)
.+.||||||...... +....+..++. .+||++++.+...-+...+......++ .--++++|.|-..
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 889999999874332 33334444443 499999998766544333333332222 2367889999643
No 388
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.67 E-value=0.00011 Score=75.34 Aligned_cols=120 Identities=16% Similarity=0.106 Sum_probs=66.8
Q ss_pred CCCCEEEeeecccccccCCCcCccchhhcccccccccccccccccceeEeecCCCCCchHHhhhhhccccccCCCCCcee
Q 043429 8 SPAPVLSIKHQTFATLKKPHISSLSHFLSKSHRRCNYSLSISKHSCIFRVSCQSQATDAELATRVGQDRLLKVPASNIRN 87 (646)
Q Consensus 8 ~~~~~~~i~~~~~~~~~~~~~~~~s~~~~~s~~~~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 87 (646)
.+.|.+.+.++.+...... ....+... + ...+ -..+.+|+..+.+...+...... ..
T Consensus 66 ~~i~~vIV~NK~DL~~~~~---~~~~~~~~------~--~~~g-~~v~~~SAktg~gi~eLf~~l~~-----------~~ 122 (245)
T TIGR00157 66 QNIEPIIVLNKIDLLDDED---MEKEQLDI------Y--RNIG-YQVLMTSSKNQDGLKELIEALQN-----------RI 122 (245)
T ss_pred CCCCEEEEEECcccCCCHH---HHHHHHHH------H--HHCC-CeEEEEecCCchhHHHHHhhhcC-----------CE
Confidence 5677888888888532110 00111111 1 1111 23567788887777766655421 36
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 88 FSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 88 I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
++++|++|+|||||+|+|+........ .+. ....+-+++|.......+ . .+ .|+||||...|.
T Consensus 123 ~~~~G~sgvGKStLiN~L~~~~~~~t~-----~i~--~~~~~G~hTT~~~~l~~l----~-~~---~liDtPG~~~~~ 185 (245)
T TIGR00157 123 SVFAGQSGVGKSSLINALDPSVKQQVN-----DIS--SKLGLGKHTTTHVELFHF----H-GG---LIADTPGFNEFG 185 (245)
T ss_pred EEEECCCCCCHHHHHHHHhhhhhcccc-----cee--ccCCCCCCcCCceEEEEc----C-Cc---EEEeCCCccccC
Confidence 799999999999999999873211100 000 001233446666554333 1 12 599999987643
No 389
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.64 E-value=0.00011 Score=76.18 Aligned_cols=62 Identities=29% Similarity=0.430 Sum_probs=38.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh----cCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM----TGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~----~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
..+++|++|+|||||+|+|... ++.++. . ..+-+.+|...... ...+.++ ++||||..
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~---------~--~~rGkHTTt~~~l~----~l~~gG~---iiDTPGf~ 227 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISE---------K--LGRGRHTTTHVELF----PLPGGGW---IIDTPGFR 227 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcc---------c--CCCCCCccceEEEE----EcCCCCE---EEeCCCCC
Confidence 5689999999999999999752 222221 1 12333445444333 3323344 99999998
Q ss_pred cchh
Q 043429 163 DFSY 166 (646)
Q Consensus 163 df~~ 166 (646)
.|.-
T Consensus 228 ~~~l 231 (301)
T COG1162 228 SLGL 231 (301)
T ss_pred ccCc
Confidence 7653
No 390
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=97.62 E-value=0.00011 Score=62.49 Aligned_cols=52 Identities=42% Similarity=0.531 Sum_probs=40.0
Q ss_pred ceEEEEEEEeecc-----------------ceEEecCCCceEEc-----------------cceeeEEEeeccccccccc
Q 043429 271 FRALIFDRIIMLM-----------------KLECYPPIKCKWKN-----------------FKQVGYLSASIRSVADARV 316 (646)
Q Consensus 271 l~~~vf~~~~d~~-----------------~~i~~~~~~~~~~v-----------------aG~Vg~i~~~i~~~~~~~~ 316 (646)
|+|+||+++||+| +.++....++...+ ||||+++.+++.+++++.+
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~~~~~~~~~~~~aGdI~~v~~g~~~l~~~~~ 80 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIFRPEMTPTDELSAGQVGYIIAGIKTVKDARV 80 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEECCCccCCceECCCCEEEEEccccccCcccc
Confidence 5799999999998 45555544433322 9999999888878889999
Q ss_pred CCeeee
Q 043429 317 GDTITH 322 (646)
Q Consensus 317 GDtl~~ 322 (646)
||||++
T Consensus 81 Gdtl~~ 86 (86)
T cd03699 81 GDTITL 86 (86)
T ss_pred ccEeeC
Confidence 999963
No 391
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.62 E-value=0.00063 Score=72.27 Aligned_cols=124 Identities=15% Similarity=0.126 Sum_probs=81.3
Q ss_pred eeeeeeEEEEEEEecCCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccH-----------hhHHHHHHHHH
Q 043429 133 ITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEA-----------QTLANVYLALE 201 (646)
Q Consensus 133 iTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~-----------qt~~~~~~~~~ 201 (646)
.|.+.....+.++ +..+.++|.+||..-+..|......++++|+|++.++-.+. +++..|.....
T Consensus 181 ~T~GI~e~~F~~k----~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n 256 (354)
T KOG0082|consen 181 PTTGIVEVEFTIK----GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICN 256 (354)
T ss_pred CcCCeeEEEEEeC----CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhc
Confidence 3666666666666 78899999999988888899999999999999998864332 22222222222
Q ss_pred ----cCCCeEEEEeccCCCC------------------CCchHHHHHHHHHh----CCC--cccccccccccccchhHHH
Q 043429 202 ----NNLEIIPVLNKIDLPG------------------AEPSRVAREIEEVI----GLD--CTNAILCSAKEGIGINEIL 253 (646)
Q Consensus 202 ----~~~piIvViNKiDl~~------------------~~~~~~~~el~~~l----~~~--~~~i~~vSAk~g~GV~eLl 253 (646)
.+.++|+++||.|+-. .+.++...-++..+ .-. ..-+..+.|..-.+|+.+|
T Consensus 257 ~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf 336 (354)
T KOG0082|consen 257 NKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVF 336 (354)
T ss_pred CcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHH
Confidence 2788999999999731 12233333333332 111 1123456777778888888
Q ss_pred HHHHHhC
Q 043429 254 NAIVKRI 260 (646)
Q Consensus 254 ~~I~~~i 260 (646)
+++.+.+
T Consensus 337 ~av~d~I 343 (354)
T KOG0082|consen 337 DAVTDTI 343 (354)
T ss_pred HHHHHHH
Confidence 8876644
No 392
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.61 E-value=0.00034 Score=76.69 Aligned_cols=64 Identities=20% Similarity=0.236 Sum_probs=41.3
Q ss_pred CeEEEEEeCCCCccchhh----Hhhhhh--hccceEEEEeCCCCccHhhHHHHHHHHHcC-CCeEEEEeccCCC
Q 043429 150 PFCLNLIDTPGHVDFSYE----VSRSLA--ACEGALLVVDASQGVEAQTLANVYLALENN-LEIIPVLNKIDLP 216 (646)
Q Consensus 150 ~~~l~liDTPG~~df~~~----~~~~l~--~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~-~piIvViNKiDl~ 216 (646)
++.+.||||||....... +..... ..|-++||+|++.|....... .+.... -+--+|+||+|..
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a---~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA---KAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH---HHHHhccCCcEEEEECccCC
Confidence 688999999997654332 222222 356789999999875553222 222222 3578899999964
No 393
>PRK12289 GTPase RsgA; Reviewed
Probab=97.61 E-value=0.00015 Score=78.03 Aligned_cols=120 Identities=14% Similarity=0.100 Sum_probs=66.9
Q ss_pred CCCCEEEeeecccccccCCCcCccchhhcccccccccccccccccceeEeecCCCCCchHHhhhhhccccccCCCCCcee
Q 043429 8 SPAPVLSIKHQTFATLKKPHISSLSHFLSKSHRRCNYSLSISKHSCIFRVSCQSQATDAELATRVGQDRLLKVPASNIRN 87 (646)
Q Consensus 8 ~~~~~~~i~~~~~~~~~~~~~~~~s~~~~~s~~~~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 87 (646)
.+.|.+.+-++.+.. .. .....|... + ...+ ..++.+|+.++.+...+...... ..
T Consensus 119 ~~ip~ILVlNK~DLv-~~---~~~~~~~~~------~--~~~g-~~v~~iSA~tg~GI~eL~~~L~~-----------ki 174 (352)
T PRK12289 119 TGLEIVLCLNKADLV-SP---TEQQQWQDR------L--QQWG-YQPLFISVETGIGLEALLEQLRN-----------KI 174 (352)
T ss_pred CCCCEEEEEEchhcC-Ch---HHHHHHHHH------H--HhcC-CeEEEEEcCCCCCHHHHhhhhcc-----------ce
Confidence 567888888888852 11 111122211 0 0111 13678899988887776665421 13
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 88 FSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 88 I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
++|+|.+|+|||||+|+|+........ .+. ....+-+.+|....... ..+++ .|+||||...+.
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~-----~vs--~~~~rGrHTT~~~~l~~----l~~g~---~liDTPG~~~~~ 238 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVG-----KVS--GKLGRGRHTTRHVELFE----LPNGG---LLADTPGFNQPD 238 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccc-----ccc--CCCCCCCCcCceeEEEE----CCCCc---EEEeCCCccccc
Confidence 799999999999999999863211100 000 01122333555543322 22222 599999987654
No 394
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.58 E-value=0.00066 Score=65.38 Aligned_cols=81 Identities=22% Similarity=0.252 Sum_probs=45.8
Q ss_pred CCeEEEEEeCCCCccchhh----Hhhhh--hhccceEEEEeCCCCccHhhHHHHHHH-HHcCCCeEEEEeccCCCCCCch
Q 043429 149 EPFCLNLIDTPGHVDFSYE----VSRSL--AACEGALLVVDASQGVEAQTLANVYLA-LENNLEIIPVLNKIDLPGAEPS 221 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~----~~~~l--~~ad~~IlVvDa~~g~~~qt~~~~~~~-~~~~~piIvViNKiDl~~~~~~ 221 (646)
.++.+.++||||...+... ..... ...|.+++|+|+..+.. ........ ...+ ..-+|+||+|..... .
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~--~~~~~~~~~~~~~-~~~viltk~D~~~~~-g 156 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD--AVNQAKAFNEALG-ITGVILTKLDGDARG-G 156 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH--HHHHHHHHHhhCC-CCEEEEECCcCCCCc-c
Confidence 3567889999998643222 22222 23889999999965433 22222222 2234 367888999975432 2
Q ss_pred HHHHHHHHHhCCC
Q 043429 222 RVAREIEEVIGLD 234 (646)
Q Consensus 222 ~~~~el~~~l~~~ 234 (646)
...+ +....+.+
T Consensus 157 ~~~~-~~~~~~~p 168 (173)
T cd03115 157 AALS-IRAVTGKP 168 (173)
T ss_pred hhhh-hHHHHCcC
Confidence 2333 54555543
No 395
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.55 E-value=0.00023 Score=74.67 Aligned_cols=88 Identities=25% Similarity=0.283 Sum_probs=52.7
Q ss_pred ceeEeecCCCCCchHHhhhhhccccccCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccc
Q 043429 53 CIFRVSCQSQATDAELATRVGQDRLLKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERG 132 (646)
Q Consensus 53 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~g 132 (646)
..+.+|+..+.+...+...... ..++++|++|+|||||+|.|+........ .+. ....+-++
T Consensus 140 ~v~~vSA~~g~gi~~L~~~L~~-----------k~~~~~G~sg~GKSTlin~l~~~~~~~~g-----~v~--~~~~~g~~ 201 (287)
T cd01854 140 PVLAVSAKTGEGLDELREYLKG-----------KTSVLVGQSGVGKSTLINALLPDLDLATG-----EIS--EKLGRGRH 201 (287)
T ss_pred eEEEEECCCCccHHHHHhhhcc-----------ceEEEECCCCCCHHHHHHHHhchhhcccc-----cee--ccCCCCCc
Confidence 4467788888777666554321 47899999999999999999874221110 000 01122334
Q ss_pred eeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 133 ITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 133 iTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
+|.......+ .+.. .++||||..+|.
T Consensus 202 tT~~~~~~~~----~~~~---~liDtPG~~~~~ 227 (287)
T cd01854 202 TTTHRELFPL----PGGG---LLIDTPGFREFG 227 (287)
T ss_pred ccceEEEEEc----CCCC---EEEECCCCCccC
Confidence 5554433222 1112 599999997764
No 396
>PRK01889 GTPase RsgA; Reviewed
Probab=97.50 E-value=0.00028 Score=76.20 Aligned_cols=83 Identities=20% Similarity=0.274 Sum_probs=61.5
Q ss_pred hhhccceEEEEeCCCCccHhhHHHHH-HHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcccccccccccccchh
Q 043429 172 LAACEGALLVVDASQGVEAQTLANVY-LALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGIN 250 (646)
Q Consensus 172 l~~ad~~IlVvDa~~g~~~qt~~~~~-~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~~vSAk~g~GV~ 250 (646)
.+++|.+++|+++........+..+. .+...+++.++|+||+||... .++..+++... . ...+++.+|+++|.|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~-~~~~~~~~~~~-~-~g~~Vi~vSa~~g~gl~ 186 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED-AEEKIAEVEAL-A-PGVPVLAVSALDGEGLD 186 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC-HHHHHHHHHHh-C-CCCcEEEEECCCCccHH
Confidence 57789999999998777775665544 445679999999999999643 22333444443 2 23468999999999999
Q ss_pred HHHHHHH
Q 043429 251 EILNAIV 257 (646)
Q Consensus 251 eLl~~I~ 257 (646)
+|.+++.
T Consensus 187 ~L~~~L~ 193 (356)
T PRK01889 187 VLAAWLS 193 (356)
T ss_pred HHHHHhh
Confidence 9998873
No 397
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.50 E-value=0.00063 Score=65.40 Aligned_cols=81 Identities=20% Similarity=0.250 Sum_probs=55.0
Q ss_pred EEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCCchHHHHHHHHH
Q 043429 152 CLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPGAEPSRVAREIEEV 230 (646)
Q Consensus 152 ~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~~~~~~~el~~~ 230 (646)
.+.+||||+... ......+..+|.+|++++++......+...+......+.+ ..+|+|++|.......+..+++.+.
T Consensus 64 d~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~~~~~ 141 (179)
T cd02036 64 DYILIDSPAGIE--RGFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGDMVEDIEEI 141 (179)
T ss_pred CEEEEECCCCCc--HHHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhhHHHHHHHH
Confidence 688999998654 3455678999999999998875544444433333344554 6789999987544444445667777
Q ss_pred hCCC
Q 043429 231 IGLD 234 (646)
Q Consensus 231 l~~~ 234 (646)
++.+
T Consensus 142 ~~~~ 145 (179)
T cd02036 142 LGVP 145 (179)
T ss_pred hCCC
Confidence 7654
No 398
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.47 E-value=0.00037 Score=74.89 Aligned_cols=86 Identities=20% Similarity=0.140 Sum_probs=57.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcC-CccccccccccccccccccccceeeeeeEEEEEEEec-------------CCCe
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTG-TVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFE-------------NEPF 151 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~-~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~-------------~~~~ 151 (646)
.+++|+|.+|+|||||.++|..... .+ .++ +..|+......+.+... -...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~----------a~y-----pftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a 67 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEA----------ANP-----PFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPT 67 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCcccc----------CCC-----CCCCCCCceeEEEechhHHHHHHHHhCCcCcCCc
Confidence 4789999999999999999976432 11 111 22334444433333210 0134
Q ss_pred EEEEEeCCCCcc-------chhhHhhhhhhccceEEEEeCCC
Q 043429 152 CLNLIDTPGHVD-------FSYEVSRSLAACEGALLVVDASQ 186 (646)
Q Consensus 152 ~l~liDTPG~~d-------f~~~~~~~l~~ad~~IlVvDa~~ 186 (646)
.+.++|.||... ........++.||++++|+|+..
T Consensus 68 ~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 68 TTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred eEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 688999999865 33466778999999999999864
No 399
>PRK13796 GTPase YqeH; Provisional
Probab=97.46 E-value=0.00035 Score=75.81 Aligned_cols=95 Identities=27% Similarity=0.290 Sum_probs=61.6
Q ss_pred cchhhHhhhhhhcc-ceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC--chHH---HHHHHHHhCCCcc
Q 043429 163 DFSYEVSRSLAACE-GALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE--PSRV---AREIEEVIGLDCT 236 (646)
Q Consensus 163 df~~~~~~~l~~ad-~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~--~~~~---~~el~~~l~~~~~ 236 (646)
+|.. +...+...| .+++|+|+.+... +..........+.|+++|+||+|+.... .+.. .....+.+++...
T Consensus 58 ~~~~-~l~~i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~ 134 (365)
T PRK13796 58 DFLK-LLNGIGDSDALVVNVVDIFDFNG--SWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPV 134 (365)
T ss_pred HHHH-HHHhhcccCcEEEEEEECccCCC--chhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcC
Confidence 4444 445555556 8899999987442 2111222223478999999999986432 1222 2233344565545
Q ss_pred cccccccccccchhHHHHHHHHhC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++.+||++|.|++++++.|.+..
T Consensus 135 ~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 135 DVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 689999999999999999997753
No 400
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.45 E-value=0.00031 Score=70.97 Aligned_cols=90 Identities=16% Similarity=0.113 Sum_probs=52.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
.+.-|+|+|..++|||||+|+|+....... +.+. ....|.+.......+. .+.+..+.++||||..+
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~-------~~~~-----~~~~T~gi~~~~~~~~-~~~~~~v~~lDteG~~~ 72 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFD-------VMDT-----SQQTTKGIWMWSVPFK-LGKEHAVLLLDTEGTDG 72 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeE-------ecCC-----CCCCccceEEEecccc-CCCcceEEEEecCCcCc
Confidence 456899999999999999999987421110 0000 0122332221111111 12357899999999876
Q ss_pred chh------hHhhhhhh--ccceEEEEeCCC
Q 043429 164 FSY------EVSRSLAA--CEGALLVVDASQ 186 (646)
Q Consensus 164 f~~------~~~~~l~~--ad~~IlVvDa~~ 186 (646)
... ....++.. +|.+|+.++...
T Consensus 73 ~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 73 RERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred cccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 422 12334444 777777777653
No 401
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.45 E-value=0.00021 Score=70.58 Aligned_cols=67 Identities=25% Similarity=0.206 Sum_probs=39.4
Q ss_pred CCeEEEEEeCCCCccchhh----Hhhhhh--hccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCC
Q 043429 149 EPFCLNLIDTPGHVDFSYE----VSRSLA--ACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPG 217 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~----~~~~l~--~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~ 217 (646)
+++.+.||||||......+ +...+. ..+-++||+|++.+.+.. ..+....+.--+--++++|.|-..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~--~~~~~~~~~~~~~~lIlTKlDet~ 154 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL--EQALAFYEAFGIDGLILTKLDETA 154 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH--HHHHHHHHHSSTCEEEEESTTSSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH--HHHHHHhhcccCceEEEEeecCCC
Confidence 3577899999997654432 333332 356689999998765432 233333332223366799999643
No 402
>PRK00098 GTPase RsgA; Reviewed
Probab=97.36 E-value=0.00052 Score=72.41 Aligned_cols=45 Identities=20% Similarity=0.170 Sum_probs=34.3
Q ss_pred ceeEeecCCCCCchHHhhhhhccccccCCCCCceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 53 CIFRVSCQSQATDAELATRVGQDRLLKVPASNIRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 53 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..+.+|+..+.+...+.... .. ..++++|++|+|||||+|+|+..
T Consensus 143 ~v~~vSA~~g~gi~~L~~~l-----~g------k~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 143 DVLELSAKEGEGLDELKPLL-----AG------KVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred eEEEEeCCCCccHHHHHhhc-----cC------ceEEEECCCCCCHHHHHHHHhCC
Confidence 35678888887776666543 11 36899999999999999999863
No 403
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.29 E-value=0.0013 Score=73.59 Aligned_cols=65 Identities=26% Similarity=0.202 Sum_probs=38.7
Q ss_pred CeEEEEEeCCCCccchhhHhh---hhh--hccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCC
Q 043429 150 PFCLNLIDTPGHVDFSYEVSR---SLA--ACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP 216 (646)
Q Consensus 150 ~~~l~liDTPG~~df~~~~~~---~l~--~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~ 216 (646)
++.+.||||||.......... .+. .....++|++++.+ .++.......+....+.-+|+||+|..
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~~~~~gvILTKlDEt 497 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAHAKPQGVVLTKLDET 497 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHhhCCeEEEEecCcCc
Confidence 578999999997543322111 111 12356888888764 333333333333345678999999973
No 404
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.24 E-value=0.00054 Score=69.30 Aligned_cols=118 Identities=25% Similarity=0.269 Sum_probs=69.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..||..+|..|-|||||++.|.+....... .....+ ++.....+.+..-.+-..+++++||.|+.|-
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p-----------~~H~~~--~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQ 108 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEP-----------STHTLP--NVKLQANTYELQESNVRLKLTIVDTVGFGDQ 108 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCC-----------CccCCC--CceeecchhhhhhcCeeEEEEEEeecccccc
Confidence 479999999999999999999873211110 001111 3333333333333344678999999998751
Q ss_pred h--------------hhHh----------hhhh-----hccceEEEEeCCCCccHhhHHH-HHHHHHcCCCeEEEEeccC
Q 043429 165 S--------------YEVS----------RSLA-----ACEGALLVVDASQGVEAQTLAN-VYLALENNLEIIPVLNKID 214 (646)
Q Consensus 165 ~--------------~~~~----------~~l~-----~ad~~IlVvDa~~g~~~qt~~~-~~~~~~~~~piIvViNKiD 214 (646)
. .... +++. ..++|++.+..+. -+..++.. ....+...+.||+|+-|.|
T Consensus 109 inK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~LdskVNIIPvIAKaD 187 (406)
T KOG3859|consen 109 INKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLDSKVNIIPVIAKAD 187 (406)
T ss_pred cCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHhhhhhhHHHHHHhh
Confidence 1 1111 2222 2568888888763 23333322 2334456778999999999
Q ss_pred CC
Q 043429 215 LP 216 (646)
Q Consensus 215 l~ 216 (646)
-.
T Consensus 188 ti 189 (406)
T KOG3859|consen 188 TI 189 (406)
T ss_pred hh
Confidence 54
No 405
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.24 E-value=0.00064 Score=70.84 Aligned_cols=87 Identities=21% Similarity=0.195 Sum_probs=60.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEec-------------CCCeE
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFE-------------NEPFC 152 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~-------------~~~~~ 152 (646)
.+++|+|.+|+|||||.|.|...... .+.-+-.||+.....+..... .....
T Consensus 21 lkiGIVGlPNvGKST~fnalT~~~a~---------------~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~ 85 (391)
T KOG1491|consen 21 LKIGIVGLPNVGKSTFFNALTKSKAG---------------AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAF 85 (391)
T ss_pred ceeeEeeCCCCchHHHHHHHhcCCCC---------------ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeee
Confidence 58999999999999999999763211 222333566666555444211 12456
Q ss_pred EEEEeCCCCcc-------chhhHhhhhhhccceEEEEeCCCC
Q 043429 153 LNLIDTPGHVD-------FSYEVSRSLAACEGALLVVDASQG 187 (646)
Q Consensus 153 l~liDTPG~~d-------f~~~~~~~l~~ad~~IlVvDa~~g 187 (646)
+++.|++|... .......-++.+|+++-||++...
T Consensus 86 l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~d 127 (391)
T KOG1491|consen 86 LTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFED 127 (391)
T ss_pred EEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecCc
Confidence 89999999765 233456678999999999998753
No 406
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.23 E-value=0.0029 Score=69.25 Aligned_cols=142 Identities=16% Similarity=0.219 Sum_probs=85.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccc-------------------ccccccc-----------------
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMK-------------------EQFLDNM----------------- 125 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~-------------------~~~~d~~----------------- 125 (646)
.++.++|+++|+..+||||.++.+.... +-.++++ .+|-|+.
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqAR--IFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e 382 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQAR--IFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHE 382 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHhc--cCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHH
Confidence 4578999999999999999999887621 1111111 2222211
Q ss_pred -----ccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc-------------chhhHhhhhhhccceEEEEeCCCC
Q 043429 126 -----DLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD-------------FSYEVSRSLAACEGALLVVDASQG 187 (646)
Q Consensus 126 -----~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d-------------f~~~~~~~l~~ad~~IlVvDa~~g 187 (646)
...-..|.|+...+..+..+..+ --++.|+|.||... ...+...++.+.+++|||+--..-
T Consensus 383 ~E~RMr~sVr~GkTVSnEvIsltVKGPg-LqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSV 461 (980)
T KOG0447|consen 383 IELRMRKNVKEGCTVSPETISLNVKGPG-LQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV 461 (980)
T ss_pred HHHHHHhcccCCcccccceEEEeecCCC-cceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCc
Confidence 11224567888777777665332 34678999999742 223455688888999998743221
Q ss_pred c-cHhhHHHHHH-HHHcCCCeEEEEeccCCCCC---CchHHHHH
Q 043429 188 V-EAQTLANVYL-ALENNLEIIPVLNKIDLPGA---EPSRVARE 226 (646)
Q Consensus 188 ~-~~qt~~~~~~-~~~~~~piIvViNKiDl~~~---~~~~~~~e 226 (646)
. +-..+..+.. .--.+...|+|++|+|+... ++.++.+-
T Consensus 462 DAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kI 505 (980)
T KOG0447|consen 462 DAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQI 505 (980)
T ss_pred chhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHH
Confidence 1 1111112211 22257779999999998753 45444333
No 407
>PRK10867 signal recognition particle protein; Provisional
Probab=97.22 E-value=0.002 Score=71.00 Aligned_cols=93 Identities=25% Similarity=0.308 Sum_probs=50.8
Q ss_pred CCeEEEEEeCCCCccchhh----Hhhh--hhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCCch
Q 043429 149 EPFCLNLIDTPGHVDFSYE----VSRS--LAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPGAEPS 221 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~----~~~~--l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~~~ 221 (646)
.++.+.|+||||....... .... ....+.+++|+|+..+ +............++ .-+|+||+|-... .-
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~~i~giIlTKlD~~~r-gG 257 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEALGLTGVILTKLDGDAR-GG 257 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhCCCCEEEEeCccCccc-cc
Confidence 3578999999996543222 1111 1246778999998754 333233333333443 4678899995322 21
Q ss_pred HHHHHHHHHhCCCcccccccccccccchhH
Q 043429 222 RVAREIEEVIGLDCTNAILCSAKEGIGINE 251 (646)
Q Consensus 222 ~~~~el~~~l~~~~~~i~~vSAk~g~GV~e 251 (646)
..-.+....+.+ +.+++. |+++++
T Consensus 258 -~alsi~~~~~~P---I~fig~--Ge~v~D 281 (433)
T PRK10867 258 -AALSIRAVTGKP---IKFIGT--GEKLDD 281 (433)
T ss_pred -HHHHHHHHHCcC---EEEEeC--CCcccc
Confidence 233455556654 444433 444433
No 408
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.22 E-value=0.0018 Score=71.39 Aligned_cols=81 Identities=27% Similarity=0.334 Sum_probs=46.1
Q ss_pred CCeEEEEEeCCCCccchhhHhhh------hhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCCch
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRS------LAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPGAEPS 221 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~------l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~~~ 221 (646)
.++.+.|+||||........... ....|.++||+|+..+ +....+.......++ .-+|+||+|-... .-
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v~i~giIlTKlD~~~~-~G 256 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERLGLTGVVLTKLDGDAR-GG 256 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhCCCCEEEEeCccCccc-cc
Confidence 45778999999965433222221 2236889999999865 333233333333333 4677999995322 11
Q ss_pred HHHHHHHHHhCCC
Q 043429 222 RVAREIEEVIGLD 234 (646)
Q Consensus 222 ~~~~el~~~l~~~ 234 (646)
....+....+.+
T Consensus 257 -~~lsi~~~~~~P 268 (428)
T TIGR00959 257 -AALSVRSVTGKP 268 (428)
T ss_pred -HHHHHHHHHCcC
Confidence 134555556654
No 409
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.08 E-value=0.0005 Score=75.13 Aligned_cols=74 Identities=22% Similarity=0.280 Sum_probs=54.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|++||-+|+||||+||+|.+.. ...+++.+|-|-..++..+ .-.+.|.||||.+-=
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~K--------------kVsVS~TPGkTKHFQTi~l-------s~~v~LCDCPGLVfP 372 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRK--------------KVSVSSTPGKTKHFQTIFL-------SPSVCLCDCPGLVFP 372 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCc--------------eeeeecCCCCcceeEEEEc-------CCCceecCCCCcccc
Confidence 5799999999999999999998732 2336778898988887655 346779999998743
Q ss_pred hhhHhhhhhhccceE
Q 043429 165 SYEVSRSLAACEGAL 179 (646)
Q Consensus 165 ~~~~~~~l~~ad~~I 179 (646)
+....++.-.++|++
T Consensus 373 Sf~~~r~emvl~GiL 387 (562)
T KOG1424|consen 373 SFSPTRAEMVLNGIL 387 (562)
T ss_pred CCCchHHHHHHhcCc
Confidence 333335555566654
No 410
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.06 E-value=0.0064 Score=64.62 Aligned_cols=165 Identities=21% Similarity=0.175 Sum_probs=83.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCcc----ccccccccccc-cccccccceeeeeeEEEEEEEe------------c-
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQ----KREMKEQFLDN-MDLERERGITIKLQAARMRYVF------------E- 147 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~----~~~~~~~~~d~-~~~e~e~giTi~~~~~~~~~~~------------~- 147 (646)
+-..|-|-=|+|||||+++|+.....-. -.+.++--.|. .-......-........+-... .
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 3457889999999999999998543100 01111222221 1111111112222222221110 0
Q ss_pred CCCeEEEEEeCCCCccchhhHhh--------hhhhccceEEEEeCCCCccHhhH--HHHHHHHHcCCCeEEEEeccCCCC
Q 043429 148 NEPFCLNLIDTPGHVDFSYEVSR--------SLAACEGALLVVDASQGVEAQTL--ANVYLALENNLEIIPVLNKIDLPG 217 (646)
Q Consensus 148 ~~~~~l~liDTPG~~df~~~~~~--------~l~~ad~~IlVvDa~~g~~~qt~--~~~~~~~~~~~piIvViNKiDl~~ 217 (646)
.+.....+|.|-|..+=...+.. ..-..|+++-|||+.+....... ..+...+. ..=++|+||.|+.+
T Consensus 82 ~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia--~AD~ivlNK~Dlv~ 159 (323)
T COG0523 82 RDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA--FADVIVLNKTDLVD 159 (323)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH--hCcEEEEecccCCC
Confidence 12366779999998764332222 22346889999999986554331 12211111 12289999999987
Q ss_pred CCchHHHHHHHHHhCCCcccccccccccccchhHHHH
Q 043429 218 AEPSRVAREIEEVIGLDCTNAILCSAKEGIGINEILN 254 (646)
Q Consensus 218 ~~~~~~~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~ 254 (646)
+...+..++..+.++ +..+++.+|. .+.+..+++.
T Consensus 160 ~~~l~~l~~~l~~ln-p~A~i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 160 AEELEALEARLRKLN-PRARIIETSY-GDVDLAELLD 194 (323)
T ss_pred HHHHHHHHHHHHHhC-CCCeEEEccc-cCCCHHHhhc
Confidence 653233333333333 3346777776 3344434433
No 411
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.05 E-value=0.004 Score=66.26 Aligned_cols=143 Identities=17% Similarity=0.151 Sum_probs=71.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCc----cccccccccccccccccccceeeeeeEEEEEEEecC-----------
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTV----QKREMKEQFLDNMDLERERGITIKLQAARMRYVFEN----------- 148 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i----~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~----------- 148 (646)
.++-..|.|--|+|||||+++++...... -..+.+..-.|..-......-.+......+-....+
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 35667899999999999999999742110 011112211222111111000111111111111000
Q ss_pred ------CCeEEEEEeCCCCccchhhHhhhh--------hhccceEEEEeCCCCccHhhH-HHHHHHHHcCCCeEEEEecc
Q 043429 149 ------EPFCLNLIDTPGHVDFSYEVSRSL--------AACEGALLVVDASQGVEAQTL-ANVYLALENNLEIIPVLNKI 213 (646)
Q Consensus 149 ------~~~~l~liDTPG~~df~~~~~~~l--------~~ad~~IlVvDa~~g~~~qt~-~~~~~~~~~~~piIvViNKi 213 (646)
......+|.|.|..+-.......+ -..++++.|+|+......... ..... +-...=++|+||+
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~--Qi~~AD~IvlnK~ 160 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQS--QVGYADRILLTKT 160 (318)
T ss_pred HHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHH--HHHhCCEEEEecc
Confidence 135667999999987444333221 125889999999865432111 11111 1112238999999
Q ss_pred CCCCCCchHHHHHHHH
Q 043429 214 DLPGAEPSRVAREIEE 229 (646)
Q Consensus 214 Dl~~~~~~~~~~el~~ 229 (646)
|+.... +.+.+.++.
T Consensus 161 Dl~~~~-~~~~~~l~~ 175 (318)
T PRK11537 161 DVAGEA-EKLRERLAR 175 (318)
T ss_pred ccCCHH-HHHHHHHHH
Confidence 987642 333344433
No 412
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=97.04 E-value=0.0013 Score=55.58 Aligned_cols=47 Identities=19% Similarity=0.190 Sum_probs=33.2
Q ss_pred ceEEEEEEEeecc-----------------ceEEecCCCceE--------------Ec----cceeeEEEeecccccccc
Q 043429 271 FRALIFDRIIMLM-----------------KLECYPPIKCKW--------------KN----FKQVGYLSASIRSVADAR 315 (646)
Q Consensus 271 l~~~vf~~~~d~~-----------------~~i~~~~~~~~~--------------~v----aG~Vg~i~~~i~~~~~~~ 315 (646)
|.|+|||+++|+| +.++.+..++.. ++ ||||+++. | +++++
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~-g---l~~~~ 76 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVIT-G---LKQTR 76 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEEE-C---CCCcc
Confidence 5689999999998 444444433322 22 99999864 4 56799
Q ss_pred cCCeee
Q 043429 316 VGDTIT 321 (646)
Q Consensus 316 ~GDtl~ 321 (646)
+||||+
T Consensus 77 ~Gdtl~ 82 (83)
T cd04092 77 TGDTLV 82 (83)
T ss_pred cCCEEe
Confidence 999996
No 413
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.00056 Score=73.76 Aligned_cols=66 Identities=18% Similarity=0.110 Sum_probs=39.2
Q ss_pred CeEEEEEeCCCCccchh----hHhhhhhh--ccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCC
Q 043429 150 PFCLNLIDTPGHVDFSY----EVSRSLAA--CEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPG 217 (646)
Q Consensus 150 ~~~l~liDTPG~~df~~----~~~~~l~~--ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~ 217 (646)
++.+.||||||...... ++.+.+.. .+.++||+|++.+. ++...+......--.--++++|+|-..
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~~idglI~TKLDET~ 391 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDIHIDGIVFTKFDETA 391 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCCCCCEEEEEcccCCC
Confidence 47889999999865333 23333332 45678999987433 233333333333222567899999654
No 414
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=97.00 E-value=0.0014 Score=55.20 Aligned_cols=47 Identities=23% Similarity=0.274 Sum_probs=33.6
Q ss_pred ceEEEEEEEeecc-----------------ceEEecCCCceEE--------------c----cceeeEEEeecccccccc
Q 043429 271 FRALIFDRIIMLM-----------------KLECYPPIKCKWK--------------N----FKQVGYLSASIRSVADAR 315 (646)
Q Consensus 271 l~~~vf~~~~d~~-----------------~~i~~~~~~~~~~--------------v----aG~Vg~i~~~i~~~~~~~ 315 (646)
|.|+|||++||+| ++++.+..++... + ||||+++. | +++++
T Consensus 1 ~~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~-g---~~~~~ 76 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAVA-G---LKDTA 76 (83)
T ss_pred CEEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEEE-C---CCCCc
Confidence 4689999999997 4554444433332 2 99999874 4 46789
Q ss_pred cCCeee
Q 043429 316 VGDTIT 321 (646)
Q Consensus 316 ~GDtl~ 321 (646)
+|||++
T Consensus 77 ~Gdtl~ 82 (83)
T cd04088 77 TGDTLC 82 (83)
T ss_pred cCCEee
Confidence 999996
No 415
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.00 E-value=0.0094 Score=64.36 Aligned_cols=171 Identities=18% Similarity=0.239 Sum_probs=97.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccc---cccccccccccccccccceeee---eeEEE---EEEEe-cCCCeEEEEE
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQK---REMKEQFLDNMDLERERGITIK---LQAAR---MRYVF-ENEPFCLNLI 156 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~---~~~~~~~~d~~~~e~e~giTi~---~~~~~---~~~~~-~~~~~~l~li 156 (646)
=|+++|++-+||||++.||.+.. .++. ........|.++.+ ..|-||- ..++. ..... ++-.+++.|+
T Consensus 19 YiGVVGPVRTGKSTFIKRFMel~-VlPnI~d~~~reRa~DELPQS-~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 19 YIGVVGPVRTGKSTFIKRFMELL-VLPNIEDEYERERARDELPQS-GAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred EEEeecCcccCchhHHHHHHHHh-cCCCCCCHHHHHHhhhcCCcC-CCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 58999999999999999999843 2222 11223344555443 2333322 22111 11122 3457889999
Q ss_pred eCCCCc--------c-----------chhhHhh----------hhhh--ccceEEEEeCCCCcc------HhhHHHHHHH
Q 043429 157 DTPGHV--------D-----------FSYEVSR----------SLAA--CEGALLVVDASQGVE------AQTLANVYLA 199 (646)
Q Consensus 157 DTPG~~--------d-----------f~~~~~~----------~l~~--ad~~IlVvDa~~g~~------~qt~~~~~~~ 199 (646)
||-|+. + |..++.- .+.. .=|+++--|.+-+.- ....+....+
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 998753 1 1111111 1111 113444444443221 1122334445
Q ss_pred HHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcccccccccc--cccchhHHHHHHHHhCCC
Q 043429 200 LENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAK--EGIGINEILNAIVKRIPP 262 (646)
Q Consensus 200 ~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~~vSAk--~g~GV~eLl~~I~~~ip~ 262 (646)
.+.++|+++++|=.+=......+..+++.+.++.+ ++++++. +-..|..+|+.++-.+|-
T Consensus 177 k~igKPFvillNs~~P~s~et~~L~~eL~ekY~vp---Vlpvnc~~l~~~DI~~Il~~vLyEFPV 238 (492)
T PF09547_consen 177 KEIGKPFVILLNSTKPYSEETQELAEELEEKYDVP---VLPVNCEQLREEDITRILEEVLYEFPV 238 (492)
T ss_pred HHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCc---EEEeehHHcCHHHHHHHHHHHHhcCCc
Confidence 55699999999988754455566778888888875 6666654 455677788777766654
No 416
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.99 E-value=0.0026 Score=70.35 Aligned_cols=64 Identities=20% Similarity=0.234 Sum_probs=40.6
Q ss_pred CeEEEEEeCCCCccchhhH----h--hhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCC
Q 043429 150 PFCLNLIDTPGHVDFSYEV----S--RSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLP 216 (646)
Q Consensus 150 ~~~l~liDTPG~~df~~~~----~--~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~ 216 (646)
.+.+.||||||........ . ..+..+|.+++|+|++.+. +... ........++ .-+|+||+|-.
T Consensus 175 ~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--~av~-~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 175 KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--QAKN-QAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH--HHHH-HHHHHHhcCCCCEEEEecccCC
Confidence 3578999999976644332 1 2344678999999998863 2222 2222333444 46788999963
No 417
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=96.94 E-value=0.0017 Score=55.18 Aligned_cols=50 Identities=12% Similarity=-0.002 Sum_probs=35.7
Q ss_pred CCCceEEEEEEEeecc-----------------ceE-------------EecCCCceEEc----cceeeEEEeecccccc
Q 043429 268 GCPFRALIFDRIIMLM-----------------KLE-------------CYPPIKCKWKN----FKQVGYLSASIRSVAD 313 (646)
Q Consensus 268 ~~pl~~~vf~~~~d~~-----------------~~i-------------~~~~~~~~~~v----aG~Vg~i~~~i~~~~~ 313 (646)
+.||.++||+..+|+| +.+ +.+.+.+..++ ||||+.+. ++++
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~----gl~~ 76 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNREEKIKITELRVFNNGEVVTADTVTAGDIAILT----GLKG 76 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCCCcEEEeceeEEEeCCCeEECcEECCCCEEEEE----CCCC
Confidence 3689999999999998 222 33333333333 99998765 4678
Q ss_pred cccCCeee
Q 043429 314 ARVGDTIT 321 (646)
Q Consensus 314 ~~~GDtl~ 321 (646)
+.+||||+
T Consensus 77 ~~~Gdtl~ 84 (85)
T cd03690 77 LRVGDVLG 84 (85)
T ss_pred CcCccccC
Confidence 89999985
No 418
>PRK13695 putative NTPase; Provisional
Probab=96.93 E-value=0.0055 Score=59.14 Aligned_cols=72 Identities=14% Similarity=0.198 Sum_probs=44.9
Q ss_pred eEEEEe---CCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcccccccccccccchhHHHH
Q 043429 178 ALLVVD---ASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGINEILN 254 (646)
Q Consensus 178 ~IlVvD---a~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~ 254 (646)
=++++| ..+....+....+..+.+.+.|++++.||... ....+.+....+ ..++.+ +-+|=+++.+
T Consensus 98 ~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~~-----~~~~~~i~~~~~---~~i~~~---~~~~r~~~~~ 166 (174)
T PRK13695 98 DVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRSV-----HPFVQEIKSRPG---GRVYEL---TPENRDSLPF 166 (174)
T ss_pred CEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchhh-----HHHHHHHhccCC---cEEEEE---cchhhhhHHH
Confidence 347889 55555666677777777889999999998532 222333433333 234554 4455567777
Q ss_pred HHHHhC
Q 043429 255 AIVKRI 260 (646)
Q Consensus 255 ~I~~~i 260 (646)
.|.+.+
T Consensus 167 ~~~~~~ 172 (174)
T PRK13695 167 EILNRL 172 (174)
T ss_pred HHHHHH
Confidence 776654
No 419
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.89 E-value=0.0051 Score=61.41 Aligned_cols=63 Identities=27% Similarity=0.278 Sum_probs=45.2
Q ss_pred eEEEEEeC-CCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcC-CCeEEEEeccCCC
Q 043429 151 FCLNLIDT-PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENN-LEIIPVLNKIDLP 216 (646)
Q Consensus 151 ~~l~liDT-PG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~-~piIvViNKiDl~ 216 (646)
+.+.++|| +|.+.|.. .....+|.+|.|+|.+...-....+.-.++.+.+ .++.+|+||+|-.
T Consensus 134 ~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 134 YEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred CcEEEEecccchhhhcc---ccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 56778887 57777764 3456789999999998644333334445556678 7899999999954
No 420
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.88 E-value=0.0023 Score=70.21 Aligned_cols=130 Identities=18% Similarity=0.156 Sum_probs=63.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccc-cccccccccccc---------cccccceeeeeeEEEEEE---EecCCCe
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQK-REMKEQFLDNMD---------LERERGITIKLQAARMRY---VFENEPF 151 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~-~~~~~~~~d~~~---------~e~e~giTi~~~~~~~~~---~~~~~~~ 151 (646)
-..++++|..|+||||++..|......... ...+--..|.+. ..+..|+........... ...-.++
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 368999999999999999988753210000 000000001000 001112221110000000 0011356
Q ss_pred EEEEEeCCCCccchhhHhh---hhhh---ccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCC
Q 043429 152 CLNLIDTPGHVDFSYEVSR---SLAA---CEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP 216 (646)
Q Consensus 152 ~l~liDTPG~~df~~~~~~---~l~~---ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~ 216 (646)
.+.+|||+|.......... .+.. ..-.+||+|++.+ .+++..+......--.--++++|.|-.
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~~~~~~I~TKlDEt 339 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGHGIHGCIITKVDEA 339 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCCCCCEEEEEeeeCC
Confidence 7889999997654332222 2222 2346899999853 334444444443322356789999964
No 421
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.0038 Score=62.20 Aligned_cols=155 Identities=19% Similarity=0.290 Sum_probs=85.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
++|.++|+--+||||+-.-..+..... +.+-.|....+|.+.- .+.-..+.+||.||+.+|-
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPn----------eTlflESTski~~d~i--------s~sfinf~v~dfPGQ~~~F 89 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPN----------ETLFLESTSKITRDHI--------SNSFINFQVWDFPGQMDFF 89 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCC----------ceeEeeccCcccHhhh--------hhhhcceEEeecCCccccC
Confidence 459999999999999876554421110 1122222222332210 0123678899999998854
Q ss_pred h---hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH------cCCCeEEEEeccCCCCCCc---------hHHHHHH
Q 043429 166 Y---EVSRSLAACEGALLVVDASQGVEAQTLANVYLALE------NNLEIIPVLNKIDLPGAEP---------SRVAREI 227 (646)
Q Consensus 166 ~---~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~------~~~piIvViNKiDl~~~~~---------~~~~~el 227 (646)
. ......+.+.+.|+|+|+.+.-.. .+..+..... .++.+=+++.|.|-...+. .+..+++
T Consensus 90 d~s~D~e~iF~~~gALifvIDaQddy~e-ala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l 168 (347)
T KOG3887|consen 90 DPSFDYEMIFRGVGALIFVIDAQDDYME-ALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDEL 168 (347)
T ss_pred CCccCHHHHHhccCeEEEEEechHHHHH-HHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHH
Confidence 3 334567889999999999764322 1222222222 2567889999999543321 1122223
Q ss_pred HHHhCCCccc-ccccccccccchhHHHHHHHHhC
Q 043429 228 EEVIGLDCTN-AILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 228 ~~~l~~~~~~-i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
.+. |+...+ -+...+.....|-|.|..+++.+
T Consensus 169 ~d~-gle~v~vsf~LTSIyDHSIfEAFSkvVQkL 201 (347)
T KOG3887|consen 169 ADA-GLEKVQVSFYLTSIYDHSIFEAFSKVVQKL 201 (347)
T ss_pred Hhh-hhccceEEEEEeeecchHHHHHHHHHHHHH
Confidence 222 322211 13334445566777776666544
No 422
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.85 E-value=0.0047 Score=57.44 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=43.0
Q ss_pred eEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH--cCCCeEEEEeccCC
Q 043429 151 FCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--NNLEIIPVLNKIDL 215 (646)
Q Consensus 151 ~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~--~~~piIvViNKiDl 215 (646)
+.+.++|||+..+ ......+..||.++++++.+...-..+...+....+ ...++.+|+|+++.
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 6788999998643 444678999999999999875443333333322222 24568899999974
No 423
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=96.82 E-value=0.0017 Score=71.26 Aligned_cols=151 Identities=17% Similarity=0.237 Sum_probs=100.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+++|+|..++|||+|+.+++..+-... ...+.| ....++..+++.+.+-+-|-.|+.+
T Consensus 31 lk~givg~~~sgktalvhr~ltgty~~~-------------e~~e~~------~~kkE~vv~gqs~lLlirdeg~~~~-- 89 (749)
T KOG0705|consen 31 LKLGIVGTSQSGKTALVHRYLTGTYTQD-------------ESPEGG------RFKKEVVVDGQSHLLLIRDEGGHPD-- 89 (749)
T ss_pred hheeeeecccCCceeeeeeeccceeccc-------------cCCcCc------cceeeEEeeccceEeeeecccCCch--
Confidence 3899999999999999999976332211 111111 1234455566788888889888665
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCCch--HHHHHHHHHhCCCcccc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAEPS--RVAREIEEVIGLDCTNA 238 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~~~--~~~~el~~~l~~~~~~i 238 (646)
..+-..+|++|+|+...+-.+++++..+...+. ..+|.+.|+++--...+... ...+..+.........+
T Consensus 90 ---aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy 166 (749)
T KOG0705|consen 90 ---AQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSY 166 (749)
T ss_pred ---hhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccce
Confidence 234566899999999999999999988776654 35777777776433222211 11111111223344568
Q ss_pred cccccccccchhHHHHHHHHhC
Q 043429 239 ILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~i 260 (646)
++++|.+|.+++..|+.+...+
T Consensus 167 ~et~atyGlnv~rvf~~~~~k~ 188 (749)
T KOG0705|consen 167 YETCATYGLNVERVFQEVAQKI 188 (749)
T ss_pred eecchhhhhhHHHHHHHHHHHH
Confidence 9999999999999988876543
No 424
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.80 E-value=0.004 Score=67.07 Aligned_cols=25 Identities=36% Similarity=0.271 Sum_probs=21.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..+.++++|+.|+||||++..|...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998763
No 425
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.79 E-value=0.04 Score=52.13 Aligned_cols=141 Identities=18% Similarity=0.246 Sum_probs=75.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCC-CCc--
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTP-GHV-- 162 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTP-G~~-- 162 (646)
.+|.|.|.||+|||||+.++.+... +.|.++. .+.+-+....+...-+.++|+. |-.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~-------------------~~g~kvg-Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~ 65 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLR-------------------EKGYKVG-GFITPEVREGGKRIGFKIVDLATGEEGI 65 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHH-------------------hcCceee-eEEeeeeecCCeEeeeEEEEccCCceEE
Confidence 5899999999999999999976311 1222221 1111222223334445555554 211
Q ss_pred -------------------cc----hhhHhhhhhhccceEEEEeCCCCccHhh---HHHHHHHHHcCCCeEEEEeccCCC
Q 043429 163 -------------------DF----SYEVSRSLAACEGALLVVDASQGVEAQT---LANVYLALENNLEIIPVLNKIDLP 216 (646)
Q Consensus 163 -------------------df----~~~~~~~l~~ad~~IlVvDa~~g~~~qt---~~~~~~~~~~~~piIvViNKiDl~ 216 (646)
.+ .....+++..+| ++++|---+.+..+ .+.....+..+.|+|.++.+-+.
T Consensus 66 la~~~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aD--vIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr- 142 (179)
T COG1618 66 LARVGFSRPRVGKYGVNVEGLEEIAIPALRRALEEAD--VIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSR- 142 (179)
T ss_pred EEEcCCCCcccceEEeeHHHHHHHhHHHHHHHhhcCC--EEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccC-
Confidence 01 112334444444 56677655544433 23444555678999998887654
Q ss_pred CCCchHHHHHHHHHhCCCcccccccccccccchhHHHHHHHHhC
Q 043429 217 GAEPSRVAREIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 217 ~~~~~~~~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
.-..+++....+. +++ .+-+|=+.++..|...+
T Consensus 143 ----~P~v~~ik~~~~v----~v~---lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 143 ----HPLVQRIKKLGGV----YVF---LTPENRNRILNEILSVL 175 (179)
T ss_pred ----ChHHHHhhhcCCE----EEE---EccchhhHHHHHHHHHh
Confidence 2234555544332 222 44455557777776654
No 426
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=96.70 E-value=0.002 Score=66.72 Aligned_cols=64 Identities=25% Similarity=0.265 Sum_probs=44.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
.++.|+|-||+|||||+|++........+ ...+..++|+|+.....-.... .-.+.++||||.-
T Consensus 144 ~~vmVvGvPNVGKSsLINa~r~~~Lrk~k---------~a~vG~~pGVT~~V~~~iri~~----rp~vy~iDTPGil 207 (335)
T KOG2485|consen 144 YNVMVVGVPNVGKSSLINALRNVHLRKKK---------AARVGAEPGVTRRVSERIRISH----RPPVYLIDTPGIL 207 (335)
T ss_pred eeEEEEcCCCCChHHHHHHHHHHHhhhcc---------ceeccCCCCceeeehhheEecc----CCceEEecCCCcC
Confidence 58999999999999999998764433221 1235568899988765322112 4458899999964
No 427
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.69 E-value=0.0023 Score=68.15 Aligned_cols=58 Identities=24% Similarity=0.378 Sum_probs=44.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
.-.+++|||-+|+||||++|+|..... -.+....|+|...+.+.+ +..+.|+|.||..
T Consensus 251 ~sIrvGViG~PNVGKSSvINsL~~~k~--------------C~vg~~pGvT~smqeV~L-------dk~i~llDsPgiv 308 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVINSLKRRKA--------------CNVGNVPGVTRSMQEVKL-------DKKIRLLDSPGIV 308 (435)
T ss_pred cceEeeeecCCCCChhHHHHHHHHhcc--------------ccCCCCccchhhhhheec-------cCCceeccCCcee
Confidence 446899999999999999999987322 124456788877766544 5678899999975
No 428
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.66 E-value=0.0089 Score=52.24 Aligned_cols=72 Identities=24% Similarity=0.283 Sum_probs=46.5
Q ss_pred EEEEc-CCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 88 FSIIA-HIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 88 I~IiG-~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
|++.| ..|+||||++-.|...... .+..-.+.| . +..+.+.++|+|+... .
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~---~~~~vl~~d----------------------~-d~~~d~viiD~p~~~~--~ 53 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR---RGKRVLLID----------------------L-DPQYDYIIIDTPPSLG--L 53 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh---CCCcEEEEe----------------------C-CCCCCEEEEeCcCCCC--H
Confidence 56777 5899999999888663211 000011111 1 1126788999999764 3
Q ss_pred hHhhhhhhccceEEEEeCCCC
Q 043429 167 EVSRSLAACEGALLVVDASQG 187 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g 187 (646)
.....+..||.++++++.+..
T Consensus 54 ~~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 54 LTRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred HHHHHHHHCCEEEEeccCCHH
Confidence 344788999999999988653
No 429
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=96.65 E-value=0.0042 Score=52.71 Aligned_cols=47 Identities=17% Similarity=0.084 Sum_probs=33.2
Q ss_pred ceEEEEEEEeecc-----------------ceEEecCCCc---eEEc------------------cceeeEEEeeccccc
Q 043429 271 FRALIFDRIIMLM-----------------KLECYPPIKC---KWKN------------------FKQVGYLSASIRSVA 312 (646)
Q Consensus 271 l~~~vf~~~~d~~-----------------~~i~~~~~~~---~~~v------------------aG~Vg~i~~~i~~~~ 312 (646)
|+|+|||++||+| ++++.+..+. ...| ||||+.+. +++
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~----gl~ 76 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIA----GIE 76 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEE----CCC
Confidence 5899999999998 5665554421 1222 99998543 357
Q ss_pred ccccCCeee
Q 043429 313 DARVGDTIT 321 (646)
Q Consensus 313 ~~~~GDtl~ 321 (646)
++++||||+
T Consensus 77 ~~~~Gdtl~ 85 (86)
T cd03691 77 DITIGDTIC 85 (86)
T ss_pred CCcccceec
Confidence 889999985
No 430
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.65 E-value=0.0072 Score=65.83 Aligned_cols=66 Identities=21% Similarity=0.293 Sum_probs=40.3
Q ss_pred CCeEEEEEeCCCCccch----hhHhhhhhhc--c-ceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCC
Q 043429 149 EPFCLNLIDTPGHVDFS----YEVSRSLAAC--E-GALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP 216 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~----~~~~~~l~~a--d-~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~ 216 (646)
.++.+.||||||..... .+....+..+ + -.+||+|++.+.. ++.........--+--++++|.|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~--~~~~~~~~~~~~~~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTS--DVKEIFHQFSPFSYKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHH--HHHHHHHHhcCCCCCEEEEEeccCC
Confidence 46889999999976432 2344444443 3 4789999998733 3322222222212357789999963
No 431
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.64 E-value=0.0088 Score=64.28 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
++-..|.|--|+|||||+++++..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 4 IPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 455789999999999999999974
No 432
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.63 E-value=0.0045 Score=67.56 Aligned_cols=66 Identities=23% Similarity=0.161 Sum_probs=38.5
Q ss_pred CCeEEEEEeCCCCccchh----hHhhhhhh-----ccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCC
Q 043429 149 EPFCLNLIDTPGHVDFSY----EVSRSLAA-----CEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP 216 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~----~~~~~l~~-----ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~ 216 (646)
.++.+.+|||||...... ++...++. ..-.+||+|++.+... ........+.--+--++++|.|-.
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~--~~~~~~~f~~~~~~glIlTKLDEt 372 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHH--TLTVLKAYESLNYRRILLTKLDEA 372 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHH--HHHHHHHhcCCCCCEEEEEcccCC
Confidence 367889999999863222 22333332 2247899999876432 222222332222357789999964
No 433
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=96.62 E-value=0.0047 Score=51.85 Aligned_cols=46 Identities=17% Similarity=0.066 Sum_probs=33.6
Q ss_pred ceEEEEEEEeecc----------------ceEEecCCCceEEc------------------cceeeEEEeeccccccccc
Q 043429 271 FRALIFDRIIMLM----------------KLECYPPIKCKWKN------------------FKQVGYLSASIRSVADARV 316 (646)
Q Consensus 271 l~~~vf~~~~d~~----------------~~i~~~~~~~~~~v------------------aG~Vg~i~~~i~~~~~~~~ 316 (646)
|.|.|||+.+|++ ++|+.+..++.+.| |||||++. + ++ +++
T Consensus 1 ~~a~vfK~~~~~~G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~-g---~~-~~~ 75 (81)
T cd04091 1 FVGLAFKLEEGRFGQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIF-G---ID-CAS 75 (81)
T ss_pred CeEEEEEeecCCCCCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEEEE-C---CC-ccc
Confidence 4688999988876 56666665544443 99999854 4 45 899
Q ss_pred CCeee
Q 043429 317 GDTIT 321 (646)
Q Consensus 317 GDtl~ 321 (646)
||||+
T Consensus 76 Gdtl~ 80 (81)
T cd04091 76 GDTFT 80 (81)
T ss_pred CCEec
Confidence 99996
No 434
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.61 E-value=0.01 Score=52.54 Aligned_cols=59 Identities=17% Similarity=0.080 Sum_probs=39.3
Q ss_pred EEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcC----CCeEEEEec
Q 043429 152 CLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENN----LEIIPVLNK 212 (646)
Q Consensus 152 ~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~----~piIvViNK 212 (646)
.+.++|||+... ......+..||.++++++.+...............+.+ ..+.+|+|+
T Consensus 44 D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 677999998754 34456889999999999887654444443333333333 346688875
No 435
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.59 E-value=0.0094 Score=57.67 Aligned_cols=42 Identities=29% Similarity=0.253 Sum_probs=30.7
Q ss_pred cceEEEEeCCCCccHhhHHHHHH--HHHcCCCeEEEEeccCCCC
Q 043429 176 EGALLVVDASQGVEAQTLANVYL--ALENNLEIIPVLNKIDLPG 217 (646)
Q Consensus 176 d~~IlVvDa~~g~~~qt~~~~~~--~~~~~~piIvViNKiDl~~ 217 (646)
|++++|+|+..+........... ....+.|+++|+||+|+..
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 78999999998766554433333 2235799999999999953
No 436
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.55 E-value=0.0048 Score=76.69 Aligned_cols=115 Identities=20% Similarity=0.199 Sum_probs=61.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc--
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD-- 163 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d-- 163 (646)
+=..|||++|+|||||+.+- +...... +.+.....+|+ . .+..+.|-.. -.-.+|||+|..-
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~---------~~~~~~~~~~~--~-~t~~c~wwf~---~~avliDtaG~y~~~ 175 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLA---------ERLGAAALRGV--G-GTRNCDWWFT---DEAVLIDTAGRYTTQ 175 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCc---------hhhccccccCC--C-CCcccceEec---CCEEEEcCCCccccC
Confidence 44799999999999999765 2111110 10001111111 1 1111223222 2344999999431
Q ss_pred ------chhhHhhhh---------hhccceEEEEeCCCCccH--hhH----HH-------HHHHHHcCCCeEEEEeccCC
Q 043429 164 ------FSYEVSRSL---------AACEGALLVVDASQGVEA--QTL----AN-------VYLALENNLEIIPVLNKIDL 215 (646)
Q Consensus 164 ------f~~~~~~~l---------~~ad~~IlVvDa~~g~~~--qt~----~~-------~~~~~~~~~piIvViNKiDl 215 (646)
...+|...+ +..+|+|++||+.+-... +.. .. +...+...+|+.+|+||||+
T Consensus 176 ~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dl 255 (1169)
T TIGR03348 176 DSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADL 255 (1169)
T ss_pred CCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchh
Confidence 223344333 348999999998864321 111 11 11222348999999999997
Q ss_pred C
Q 043429 216 P 216 (646)
Q Consensus 216 ~ 216 (646)
.
T Consensus 256 l 256 (1169)
T TIGR03348 256 L 256 (1169)
T ss_pred h
Confidence 5
No 437
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.54 E-value=0.0061 Score=65.75 Aligned_cols=130 Identities=16% Similarity=0.199 Sum_probs=66.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCcccc-cccccccccccc---cc------ccceeeeeeEEEEEEE---ecCCC
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKR-EMKEQFLDNMDL---ER------ERGITIKLQAARMRYV---FENEP 150 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~-~~~~~~~d~~~~---e~------e~giTi~~~~~~~~~~---~~~~~ 150 (646)
+-+.|+++|+.|+||||-+-.|........+. ..+=-.+|++.. |+ --|+++.......++. ..-..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 36889999999999999887776533211111 001011122211 00 0111221110000000 00146
Q ss_pred eEEEEEeCCCCccchh----hHhhhhhhc--cceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCC
Q 043429 151 FCLNLIDTPGHVDFSY----EVSRSLAAC--EGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLP 216 (646)
Q Consensus 151 ~~l~liDTPG~~df~~----~~~~~l~~a--d~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~ 216 (646)
+.+.|+||.|...... ++..++..+ .-..||++++. ...++......... +| --++++|+|-.
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~-~~i~~~I~TKlDET 351 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSL-FPIDGLIFTKLDET 351 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhcc-CCcceeEEEccccc
Confidence 7889999999865443 333444443 23567777764 44555555544443 33 35678999954
No 438
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.51 E-value=0.007 Score=66.95 Aligned_cols=64 Identities=22% Similarity=0.237 Sum_probs=38.0
Q ss_pred CeEEEEEeCCCCccch----hhHhhhhhh---ccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCC
Q 043429 150 PFCLNLIDTPGHVDFS----YEVSRSLAA---CEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLP 216 (646)
Q Consensus 150 ~~~l~liDTPG~~df~----~~~~~~l~~---ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~ 216 (646)
.+.+.||||||..... .++...+.. ..-+.+|++++.+. ..+........ .++ --+++||+|-.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~-~~~~~~vI~TKlDet 370 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFS-RLPLDGLIFTKLDET 370 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhC-CCCCCEEEEeccccc
Confidence 5788999999986543 233334441 23568889987542 33333333332 233 36889999963
No 439
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.49 E-value=0.0025 Score=61.89 Aligned_cols=69 Identities=25% Similarity=0.205 Sum_probs=38.5
Q ss_pred CeEEEEEeCCCCccchhhH--h---hhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC
Q 043429 150 PFCLNLIDTPGHVDFSYEV--S---RSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE 219 (646)
Q Consensus 150 ~~~l~liDTPG~~df~~~~--~---~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~ 219 (646)
.....+|.+.|..+....+ . ...-..+.++.|+|+..-........... ..-...=++|+||+|+....
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~-~Qi~~ADvIvlnK~D~~~~~ 157 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLR-EQIAFADVIVLNKIDLVSDE 157 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHH-HHHCT-SEEEEE-GGGHHHH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhh-hcchhcCEEEEeccccCChh
Confidence 4567789999977644431 1 11233678999999976432333322211 11123348899999986544
No 440
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.48 E-value=0.01 Score=61.54 Aligned_cols=66 Identities=18% Similarity=0.111 Sum_probs=39.1
Q ss_pred CeEEEEEeCCCCccchhh----Hhhhhh--hccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCC
Q 043429 150 PFCLNLIDTPGHVDFSYE----VSRSLA--ACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPG 217 (646)
Q Consensus 150 ~~~l~liDTPG~~df~~~----~~~~l~--~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~ 217 (646)
++.+.|+||||......+ +...+. ..+-.+||+|++.+. ++...+......--+--++++|.|-..
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~~~~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDIHIDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCCCCCCEEEEEeecCCC
Confidence 578899999998754332 223332 235579999987532 222233333333223577899999654
No 441
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.38 E-value=0.0071 Score=67.48 Aligned_cols=129 Identities=21% Similarity=0.147 Sum_probs=61.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCcccc-cccccccccc--------cc-ccccceeeeeeEEEEEEE---ecCCCeE
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKR-EMKEQFLDNM--------DL-ERERGITIKLQAARMRYV---FENEPFC 152 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~-~~~~~~~d~~--------~~-e~e~giTi~~~~~~~~~~---~~~~~~~ 152 (646)
.-|+++|+.|+||||++..|......-... ...--..|.+ .. .+..|+.+.......... ..-.++.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d 336 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH 336 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence 569999999999999999998632100000 0000000110 00 112222221100000000 0012456
Q ss_pred EEEEeCCCCccchhhHh---hhhhhc---cceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCC
Q 043429 153 LNLIDTPGHVDFSYEVS---RSLAAC---EGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP 216 (646)
Q Consensus 153 l~liDTPG~~df~~~~~---~~l~~a---d~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~ 216 (646)
+.+|||+|......... ..+..+ .-.+||+|++.+. .++............--+++||+|-.
T Consensus 337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~~~~~~g~IlTKlDet 404 (484)
T PRK06995 337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYRGPGLAGCILTKLDEA 404 (484)
T ss_pred eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhccCCCCEEEEeCCCCc
Confidence 88999999554332221 122221 2268999998654 33333333333333456789999954
No 442
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.25 E-value=0.0087 Score=58.67 Aligned_cols=143 Identities=17% Similarity=0.287 Sum_probs=72.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccc------------------------cccccccccccccceeeee--eEE
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMK------------------------EQFLDNMDLERERGITIKL--QAA 140 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~------------------------~~~~d~~~~e~e~giTi~~--~~~ 140 (646)
-..++|+.|+||||.+..+.+.+.++.++-.- +.++..+...+..|--.-. -..
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEyl~~ 84 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEYLLE 84 (273)
T ss_pred eEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHHHHH
Confidence 35789999999999999999866555433210 1112222222221110000 000
Q ss_pred EEEEEe---cCCCeEEEEEeCCCCccch------hhHhhhhhhcc---ceEEEEeCCCCccH-----hhHHHHHHHHHcC
Q 043429 141 RMRYVF---ENEPFCLNLIDTPGHVDFS------YEVSRSLAACE---GALLVVDASQGVEA-----QTLANVYLALENN 203 (646)
Q Consensus 141 ~~~~~~---~~~~~~l~liDTPG~~df~------~~~~~~l~~ad---~~IlVvDa~~g~~~-----qt~~~~~~~~~~~ 203 (646)
.+.|.. .+-.-.+-++|+||+.+.- ....+.+..-+ ++++++|+.=-+.. ..+..+.......
T Consensus 85 NldwL~~~~Gd~eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE 164 (273)
T KOG1534|consen 85 NLDWLEEEIGDVEDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLE 164 (273)
T ss_pred HHHHHHhhccCccCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhc
Confidence 011110 1113346689999987632 12223333312 36777765422111 1223333445568
Q ss_pred CCeEEEEeccCCCCCCchHHHHHHHHHhC
Q 043429 204 LEIIPVLNKIDLPGAEPSRVAREIEEVIG 232 (646)
Q Consensus 204 ~piIvViNKiDl~~~~~~~~~~el~~~l~ 232 (646)
+|.|=|++|+||... ...+++.+.++
T Consensus 165 ~P~INvlsKMDLlk~---~~k~~l~~Fl~ 190 (273)
T KOG1534|consen 165 VPHINVLSKMDLLKD---KNKKELERFLN 190 (273)
T ss_pred CcchhhhhHHHHhhh---hhHHHHHHhcC
Confidence 999999999998654 22344555444
No 443
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.23 E-value=0.013 Score=61.14 Aligned_cols=85 Identities=31% Similarity=0.372 Sum_probs=59.2
Q ss_pred hhhccceEEEEeCCCCc-cHhhHHHH-HHHHHcCCCeEEEEeccCCCCCCchHH--HHHHHHHhCCCccccccccccccc
Q 043429 172 LAACEGALLVVDASQGV-EAQTLANV-YLALENNLEIIPVLNKIDLPGAEPSRV--AREIEEVIGLDCTNAILCSAKEGI 247 (646)
Q Consensus 172 l~~ad~~IlVvDa~~g~-~~qt~~~~-~~~~~~~~piIvViNKiDl~~~~~~~~--~~el~~~l~~~~~~i~~vSAk~g~ 247 (646)
....|-+++|+.+.++. +..-+..+ ..+...++..++|+||+||........ ...+...+|.+ ++.+|++++.
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~---v~~~s~~~~~ 153 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYP---VLFVSAKNGD 153 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCee---EEEecCcCcc
Confidence 33467788888887763 44444444 445557899999999999976654432 23334445554 8999999999
Q ss_pred chhHHHHHHHHh
Q 043429 248 GINEILNAIVKR 259 (646)
Q Consensus 248 GV~eLl~~I~~~ 259 (646)
|+++|.+.+...
T Consensus 154 ~~~~l~~~l~~~ 165 (301)
T COG1162 154 GLEELAELLAGK 165 (301)
T ss_pred cHHHHHHHhcCC
Confidence 999998887543
No 444
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.18 E-value=0.0091 Score=69.82 Aligned_cols=66 Identities=27% Similarity=0.212 Sum_probs=37.3
Q ss_pred CCeEEEEEeCCCCccchhhHhhhhh------hccceEEEEeCCCCccHhhHHHHHHHHHcC---CCeEEEEeccCCC
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSLA------ACEGALLVVDASQGVEAQTLANVYLALENN---LEIIPVLNKIDLP 216 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l~------~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~---~piIvViNKiDl~ 216 (646)
.++.+.||||||...........+. ..+-.+||+|++.+ .+++.......... -+-=+|++|.|-.
T Consensus 262 ~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 262 GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCCCCEEEEeccCCC
Confidence 3567899999995433222222221 23457999999853 33333333333321 1346779999964
No 445
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=96.11 E-value=0.026 Score=57.26 Aligned_cols=64 Identities=13% Similarity=0.062 Sum_probs=45.4
Q ss_pred CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHH------HcCCCeEEEEeccC
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL------ENNLEIIPVLNKID 214 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~------~~~~piIvViNKiD 214 (646)
+.+.+.||||||... .....++..||.+|+.+.++.-.-..+...+.... ..++|..+++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 468999999999764 55667889999999998876544333333332222 23678889999987
No 446
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.08 E-value=0.0084 Score=57.50 Aligned_cols=65 Identities=17% Similarity=0.083 Sum_probs=46.5
Q ss_pred CCeEEEEEeCCCCccchhhHhhhh--hhccceEEEEeCCCCccHhhHHHHHHHHHcCCCe-EEEEeccCC
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSL--AACEGALLVVDASQGVEAQTLANVYLALENNLEI-IPVLNKIDL 215 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l--~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~pi-IvViNKiDl 215 (646)
..+.+.++|||+... ......+ ..+|.+++|+.+...........+....+.+.++ .+|+|+.+.
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~ 133 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYF 133 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcc
Confidence 368899999998743 2333333 5789999999888655555566666666677774 578999985
No 447
>PRK01889 GTPase RsgA; Reviewed
Probab=95.94 E-value=0.015 Score=62.94 Aligned_cols=46 Identities=24% Similarity=0.235 Sum_probs=34.9
Q ss_pred ceeEeecCCCCCchHHhhhhhccccccCCCCCceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 53 CIFRVSCQSQATDAELATRVGQDRLLKVPASNIRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 53 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..+.+|+.++.+...+...+.. -..++++|.+|+|||||++.|+..
T Consensus 173 ~Vi~vSa~~g~gl~~L~~~L~~----------g~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 173 PVLAVSALDGEGLDVLAAWLSG----------GKTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred cEEEEECCCCccHHHHHHHhhc----------CCEEEEECCCCccHHHHHHHHHHh
Confidence 4567888877776666655411 137899999999999999999874
No 448
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.91 E-value=0.047 Score=46.05 Aligned_cols=74 Identities=22% Similarity=0.213 Sum_probs=48.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchhh
Q 043429 88 FSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYE 167 (646)
Q Consensus 88 I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~~ 167 (646)
+++.|..|+||||++..+...... .|..+- .+ + .+.++|+|+..+....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-------------------~g~~v~----~~----~----d~iivD~~~~~~~~~~ 50 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-------------------RGKRVL----LI----D----DYVLIDTPPGLGLLVL 50 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-------------------CCCeEE----EE----C----CEEEEeCCCCccchhh
Confidence 578899999999999998763211 111110 00 0 5679999987653321
Q ss_pred -HhhhhhhccceEEEEeCCCCccHhh
Q 043429 168 -VSRSLAACEGALLVVDASQGVEAQT 192 (646)
Q Consensus 168 -~~~~l~~ad~~IlVvDa~~g~~~qt 192 (646)
....+..+|.++++++.........
T Consensus 51 ~~~~~~~~~~~vi~v~~~~~~~~~~~ 76 (99)
T cd01983 51 LCLLALLAADLVIIVTTPEALAVLGA 76 (99)
T ss_pred hhhhhhhhCCEEEEecCCchhhHHHH
Confidence 1456778899999998876544333
No 449
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.77 E-value=0.049 Score=52.47 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhc
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
||.|.|.+|+|||||+.+++...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 68999999999999999998743
No 450
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.73 E-value=0.064 Score=54.90 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHHH
Q 043429 88 FSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 88 I~IiG~~~~GKSTLi~~Ll~ 107 (646)
|.++|.+|+||||++..|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999876
No 451
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.56 E-value=0.07 Score=58.02 Aligned_cols=65 Identities=28% Similarity=0.350 Sum_probs=42.0
Q ss_pred CCeEEEEEeCCCCccchhhHhh------hhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCC
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSR------SLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLP 216 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~------~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~ 216 (646)
..+.+.|+||+|-.....+.-. ..-..|=++||+|+.-|..+.. .-.++...++ -=+|++|+|-.
T Consensus 181 ~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~---~A~aF~e~l~itGvIlTKlDGd 252 (451)
T COG0541 181 EGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVN---TAKAFNEALGITGVILTKLDGD 252 (451)
T ss_pred cCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHH---HHHHHhhhcCCceEEEEcccCC
Confidence 4578999999996554433322 2233577899999998765433 3334444455 36788999953
No 452
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.50 E-value=0.087 Score=52.50 Aligned_cols=82 Identities=11% Similarity=0.098 Sum_probs=46.6
Q ss_pred CCeEEEEEeCCCCccchhhHhhhh--hhccceEEEEeCCCCccHhhHHHHHHHHH---c--CCC-eEEEEeccCCCCCCc
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSL--AACEGALLVVDASQGVEAQTLANVYLALE---N--NLE-IIPVLNKIDLPGAEP 220 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l--~~ad~~IlVvDa~~g~~~qt~~~~~~~~~---~--~~p-iIvViNKiDl~~~~~ 220 (646)
+.|.+.||||+|........ ..+ +.||.++++++.+.- +..........++ . +.+ ..+|.||+|.. ..
T Consensus 115 ~~yD~ilID~~g~~~~~~~~-~~l~~~~ad~vliv~~p~~~-sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~--~~ 190 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGFA-MPIREGKADEIYIVTSGEFM-ALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD--RE 190 (212)
T ss_pred cCCCEEEEecCCCceecccc-cccccccCcEEEEEecccHH-HHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc--cH
Confidence 36889999998865322211 122 479999999977542 2222222222221 1 444 45899999954 23
Q ss_pred hHHHHHHHHHhCCC
Q 043429 221 SRVAREIEEVIGLD 234 (646)
Q Consensus 221 ~~~~~el~~~l~~~ 234 (646)
.+..+++.+.++.+
T Consensus 191 ~~~~~~~~~~~~~~ 204 (212)
T cd02117 191 TELIDAFAERLGTQ 204 (212)
T ss_pred HHHHHHHHHHcCCC
Confidence 34456666666543
No 453
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=95.45 E-value=0.025 Score=48.01 Aligned_cols=34 Identities=15% Similarity=-0.038 Sum_probs=22.9
Q ss_pred eEEecCCCceEEc----cceeeEEEeecccccccccCCeeee
Q 043429 285 LECYPPIKCKWKN----FKQVGYLSASIRSVADARVGDTITH 322 (646)
Q Consensus 285 ~i~~~~~~~~~~v----aG~Vg~i~~~i~~~~~~~~GDtl~~ 322 (646)
+|+.+.+.+..++ ||||+.+. +++++.+||||++
T Consensus 47 ~l~~~~g~~~~~v~~a~aGdIv~v~----gl~~~~~Gdtl~~ 84 (85)
T cd03689 47 NPQQFFAQDRETVDEAYPGDIIGLV----NPGNFQIGDTLTE 84 (85)
T ss_pred EeEEEecCCeeEcCEECCCCEEEEE----CCCCccccCEeeC
Confidence 3344444444444 99998775 3678899999974
No 454
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.42 E-value=0.021 Score=56.97 Aligned_cols=67 Identities=24% Similarity=0.302 Sum_probs=39.2
Q ss_pred CeEEEEEeCCCCccch------hhHhhhhhhccceEE---EEeCC---CCccHhhH--HHHHHHHHcCCCeEEEEeccCC
Q 043429 150 PFCLNLIDTPGHVDFS------YEVSRSLAACEGALL---VVDAS---QGVEAQTL--ANVYLALENNLEIIPVLNKIDL 215 (646)
Q Consensus 150 ~~~l~liDTPG~~df~------~~~~~~l~~ad~~Il---VvDa~---~g~~~qt~--~~~~~~~~~~~piIvViNKiDl 215 (646)
...+.++|+||+.++- ..+.+.+...|.-+. ++|+- ++..+-.. -.+.-.+...+|-+=|+.|+|+
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl 175 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADL 175 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHH
Confidence 4567799999998743 234456666554444 44432 22222111 1122234468999999999997
Q ss_pred C
Q 043429 216 P 216 (646)
Q Consensus 216 ~ 216 (646)
.
T Consensus 176 ~ 176 (290)
T KOG1533|consen 176 L 176 (290)
T ss_pred H
Confidence 4
No 455
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.42 E-value=0.039 Score=53.30 Aligned_cols=23 Identities=39% Similarity=0.478 Sum_probs=20.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHH
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.+-++|+|.+|+|||||+++|+.
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHH
Confidence 45789999999999999999986
No 456
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=95.37 E-value=0.029 Score=61.49 Aligned_cols=81 Identities=22% Similarity=0.203 Sum_probs=57.2
Q ss_pred ceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCcc-----------HhhHHHHHHHH
Q 043429 132 GITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVE-----------AQTLANVYLAL 200 (646)
Q Consensus 132 giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~-----------~qt~~~~~~~~ 200 (646)
..|.+.....+.+. ....+.++|++|+..-+..|..++..++++|+|++.++-.+ .+++..|....
T Consensus 220 ~~T~Gi~e~~f~~~---~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~ 296 (389)
T PF00503_consen 220 VKTTGITEIDFNFS---GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESIC 296 (389)
T ss_dssp ---SSEEEEEEEE----TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHH
T ss_pred CCCCCeeEEEEEee---cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHH
Confidence 34566665555551 37899999999999888999999999999999999875332 22334443333
Q ss_pred H----cCCCeEEEEeccCC
Q 043429 201 E----NNLEIIPVLNKIDL 215 (646)
Q Consensus 201 ~----~~~piIvViNKiDl 215 (646)
. .+.|+|+++||+|+
T Consensus 297 ~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 297 NNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp TSGGGTTSEEEEEEE-HHH
T ss_pred hCcccccCceEEeeecHHH
Confidence 3 37899999999995
No 457
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.28 E-value=0.017 Score=61.50 Aligned_cols=123 Identities=22% Similarity=0.295 Sum_probs=64.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCcccccc------cccc----cccccc-ccccceeeeeeEEEEEE---------E
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREM------KEQF----LDNMDL-ERERGITIKLQAARMRY---------V 145 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~------~~~~----~d~~~~-e~e~giTi~~~~~~~~~---------~ 145 (646)
--|.++|-.|+||||.+-.|.+... +.+. .++| .|.+.. ....++.+......... .
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~k---kkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYK---KKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHH---hcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 4578999999999999988876321 1110 1111 121111 01112222211000000 0
Q ss_pred ecCCCeEEEEEeCCCCccchhh-------HhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCC
Q 043429 146 FENEPFCLNLIDTPGHVDFSYE-------VSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDL 215 (646)
Q Consensus 146 ~~~~~~~l~liDTPG~~df~~~-------~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl 215 (646)
...+++.+.|+||.|...-... +..++ ..|-+|+|+|++-|....... .+.+..+- --++++|+|-
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai-~Pd~vi~VmDasiGQaae~Qa---~aFk~~vdvg~vIlTKlDG 252 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAI-KPDEIIFVMDASIGQAAEAQA---RAFKETVDVGAVILTKLDG 252 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhc-CCCeEEEEEeccccHhHHHHH---HHHHHhhccceEEEEeccc
Confidence 1236889999999996542222 12222 257899999999886544332 22222222 2567899995
No 458
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.27 E-value=0.034 Score=54.07 Aligned_cols=23 Identities=39% Similarity=0.411 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhc
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
+|.|+|++|+||||++.+|....
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999998863
No 459
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.15 E-value=0.013 Score=61.70 Aligned_cols=159 Identities=21% Similarity=0.248 Sum_probs=80.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCcccc---cccccc----ccccccc-cccceeeeee-----EEEEEEE----e
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKR---EMKEQF----LDNMDLE-RERGITIKLQ-----AARMRYV----F 146 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~---~~~~~~----~d~~~~e-~e~giTi~~~-----~~~~~~~----~ 146 (646)
+..-|.++|-.|+||||-+..|.+....-..+ ..+++| .+.+.+. +.-|+.+-.+ ...+-|. .
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 35678999999999999998887632111111 011111 1111110 1112222111 1111111 1
Q ss_pred cCCCeEEEEEeCCCCccch----hhHh---hhhhhccc-----eEEEEeCCCCccHhh-HHHHHHHHHcCCCeEEEEecc
Q 043429 147 ENEPFCLNLIDTPGHVDFS----YEVS---RSLAACEG-----ALLVVDASQGVEAQT-LANVYLALENNLEIIPVLNKI 213 (646)
Q Consensus 147 ~~~~~~l~liDTPG~~df~----~~~~---~~l~~ad~-----~IlVvDa~~g~~~qt-~~~~~~~~~~~~piIvViNKi 213 (646)
..+++.+.|+||+|--... .+.. +.+...+. +++++||+.|...-. .+.+..+.. + --++++|+
T Consensus 218 kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~--l-~GiIlTKl 294 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVG--L-DGIILTKL 294 (340)
T ss_pred HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcC--C-ceEEEEec
Confidence 1257889999999965422 2222 33333333 788889999866533 234443333 2 26789999
Q ss_pred CCCCCCchHHHHHHHHHhCCCcccccccccccccchhHH
Q 043429 214 DLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGINEI 252 (646)
Q Consensus 214 Dl~~~~~~~~~~el~~~l~~~~~~i~~vSAk~g~GV~eL 252 (646)
|-. +. --+.-.+...++.| +.++- -|+++++|
T Consensus 295 Dgt-AK-GG~il~I~~~l~~P---I~fiG--vGE~~~DL 326 (340)
T COG0552 295 DGT-AK-GGIILSIAYELGIP---IKFIG--VGEGYDDL 326 (340)
T ss_pred ccC-CC-cceeeeHHHHhCCC---EEEEe--CCCChhhc
Confidence 942 22 11223455666665 44442 35555554
No 460
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.14 E-value=0.026 Score=68.75 Aligned_cols=113 Identities=20% Similarity=0.126 Sum_probs=60.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc---
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD--- 163 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d--- 163 (646)
=..|||++|+||||++..--. ...+. + .....|... ..+....|-. .-.-.+|||.|-.-
T Consensus 127 Wy~viG~pgsGKTtal~~sgl-~Fpl~---------~---~~~~~~~~~-~gT~~cdwwf---~deaVlIDtaGry~~q~ 189 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLNSGL-QFPLA---------E---QMGALGLAG-PGTRNCDWWF---TDEAVLIDTAGRYITQD 189 (1188)
T ss_pred ceEEecCCCCCcchHHhcccc-cCcch---------h---hhccccccC-CCCcccCccc---ccceEEEcCCcceeccc
Confidence 368999999999998853211 00010 0 011111111 1122223332 23345999998431
Q ss_pred -----chhhHh---------hhhhhccceEEEEeCCCCcc--HhhHHH-----------HHHHHHcCCCeEEEEeccCCC
Q 043429 164 -----FSYEVS---------RSLAACEGALLVVDASQGVE--AQTLAN-----------VYLALENNLEIIPVLNKIDLP 216 (646)
Q Consensus 164 -----f~~~~~---------~~l~~ad~~IlVvDa~~g~~--~qt~~~-----------~~~~~~~~~piIvViNKiDl~ 216 (646)
-..+|. +..+..+|+|+.+|+.+-.+ .+..++ +...+...+|+.+++||+|+.
T Consensus 190 s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll 269 (1188)
T COG3523 190 SADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLL 269 (1188)
T ss_pred CcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccc
Confidence 112333 23455899999999876322 222211 122223479999999999975
No 461
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.94 E-value=0.2 Score=52.02 Aligned_cols=93 Identities=14% Similarity=0.162 Sum_probs=52.3
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCC----------C--CchHHHHHHHHHhCC
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPG----------A--EPSRVAREIEEVIGL 233 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~----------~--~~~~~~~el~~~l~~ 233 (646)
..+.+.+..- .|+++|...-...--.+.|..+...+.+..+|.-.+++.. . -.+++.+++...+..
T Consensus 62 s~v~r~ls~~--~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~ 139 (270)
T PF08433_consen 62 SAVERALSKD--TIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEE 139 (270)
T ss_dssp HHHHHHHTT---SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---
T ss_pred HHHHHhhccC--eEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcC
Confidence 4455555443 5778899887777777888888999999888888887531 1 346677777777754
Q ss_pred Ccc------cccccc-cccccchhHHHHHHHHhC
Q 043429 234 DCT------NAILCS-AKEGIGINEILNAIVKRI 260 (646)
Q Consensus 234 ~~~------~i~~vS-Ak~g~GV~eLl~~I~~~i 260 (646)
+.. |.|.+. .-....+++++++|...-
T Consensus 140 P~~~nrWD~plf~i~~~~~~~~~~~I~~~l~~~~ 173 (270)
T PF08433_consen 140 PDPKNRWDSPLFTIDSSDEELPLEEIWNALFENK 173 (270)
T ss_dssp TTSS-GGGS-SEEEE-TTS---HHHHHHHHHHHH
T ss_pred CCCCCCccCCeEEEecCCCCCCHHHHHHHHHhcC
Confidence 432 455555 555567788888886543
No 462
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.92 E-value=0.14 Score=53.54 Aligned_cols=32 Identities=16% Similarity=0.348 Sum_probs=26.6
Q ss_pred cccCCCCCceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 77 LLKVPASNIRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 77 ~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
+...+..+++++.|+|++|.|||+++++|...
T Consensus 53 l~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~ 84 (302)
T PF05621_consen 53 LEYPKRHRMPNLLIVGDSNNGKTMIIERFRRL 84 (302)
T ss_pred HhCCcccCCCceEEecCCCCcHHHHHHHHHHH
Confidence 44444567889999999999999999999874
No 463
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=94.90 E-value=0.057 Score=42.05 Aligned_cols=40 Identities=28% Similarity=0.488 Sum_probs=22.6
Q ss_pred ccceEEEEeCCCC--ccHhhHHHHHHHHH---cCCCeEEEEeccC
Q 043429 175 CEGALLVVDASQG--VEAQTLANVYLALE---NNLEIIPVLNKID 214 (646)
Q Consensus 175 ad~~IlVvDa~~g--~~~qt~~~~~~~~~---~~~piIvViNKiD 214 (646)
.+.+++++|++.. -+.+....++..++ .+.|+++|+||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 5678999999864 44444444444443 2899999999998
No 464
>PRK08118 topology modulation protein; Reviewed
Probab=94.79 E-value=0.026 Score=54.32 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=21.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
.+|.|+|.+|+|||||+..|....+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999987443
No 465
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.79 E-value=0.027 Score=50.42 Aligned_cols=23 Identities=35% Similarity=0.292 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhc
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
.|+|.|.+||||||+++.|....
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47999999999999999998753
No 466
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=94.71 E-value=0.31 Score=49.15 Aligned_cols=100 Identities=14% Similarity=0.127 Sum_probs=57.5
Q ss_pred CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHH---HHHHH---HHcCCCeEEEEeccCCCCCCchH
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLA---NVYLA---LENNLEIIPVLNKIDLPGAEPSR 222 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~---~~~~~---~~~~~piIvViNKiDl~~~~~~~ 222 (646)
..+.+.|+||+|... .....++..+|.+|+-.-.+..+-.+..+ .+... ...++|.-++.|++.-. ....
T Consensus 82 ~~~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~--~~~~ 157 (231)
T PF07015_consen 82 SGFDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAA--RLTR 157 (231)
T ss_pred cCCCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcc--hhhH
Confidence 357889999999754 33455677899888876666544333333 22222 23478999999999732 2222
Q ss_pred HHHHHHHHhCCCcccccccccccccchhHHHH
Q 043429 223 VAREIEEVIGLDCTNAILCSAKEGIGINEILN 254 (646)
Q Consensus 223 ~~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~ 254 (646)
....+.+.+. ..|+|.+.-.......+++.
T Consensus 158 ~~~~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 158 AQRIISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHHHHh--cCCccccccccHHHHHHHHH
Confidence 2222333332 13466666655554444433
No 467
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.71 E-value=0.033 Score=44.26 Aligned_cols=21 Identities=33% Similarity=0.259 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
...|.|+.|+|||||++++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999976
No 468
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=94.37 E-value=0.47 Score=49.19 Aligned_cols=136 Identities=21% Similarity=0.195 Sum_probs=70.1
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccc--cccccccccccccccceee----------eeeE--EEEEEEe
Q 043429 81 PASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE--MKEQFLDNMDLERERGITI----------KLQA--ARMRYVF 146 (646)
Q Consensus 81 ~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~--~~~~~~d~~~~e~e~giTi----------~~~~--~~~~~~~ 146 (646)
+..+++-=.|.|--|+|||||+|.++..... ++- .-+.|-++.+.|+.--... .... .....+.
T Consensus 53 ~~~rIPvtIITGyLGaGKtTLLn~Il~~~hg--KRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~ 130 (391)
T KOG2743|consen 53 LGARIPVTIITGYLGAGKTTLLNYILTGQHG--KRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKD 130 (391)
T ss_pred CCCccceEEEEecccCChHHHHHHHHccCCC--ceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecc
Confidence 4456777789999999999999999873211 110 1123333333222110000 0011 1111111
Q ss_pred -----------cCCCeEEEEEeCCCCccchhhHhhhh--------hhccceEEEEeCCCCccH----hhHHHHHHHHHc-
Q 043429 147 -----------ENEPFCLNLIDTPGHVDFSYEVSRSL--------AACEGALLVVDASQGVEA----QTLANVYLALEN- 202 (646)
Q Consensus 147 -----------~~~~~~l~liDTPG~~df~~~~~~~l--------~~ad~~IlVvDa~~g~~~----qt~~~~~~~~~~- 202 (646)
..+.+...++.|-|..+-......+. -..||++-|+|+.....- .....|..|...
T Consensus 131 ~gvraie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~Qi 210 (391)
T KOG2743|consen 131 NGVRAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQI 210 (391)
T ss_pred hHHHHHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHH
Confidence 12456678999999887443332221 126899999999764211 111122222111
Q ss_pred CCCeEEEEeccCCCCC
Q 043429 203 NLEIIPVLNKIDLPGA 218 (646)
Q Consensus 203 ~~piIvViNKiDl~~~ 218 (646)
-..=-+++||.|+...
T Consensus 211 A~AD~II~NKtDli~~ 226 (391)
T KOG2743|consen 211 ALADRIIMNKTDLVSE 226 (391)
T ss_pred hhhheeeeccccccCH
Confidence 1112567999999764
No 469
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=94.27 E-value=0.033 Score=59.35 Aligned_cols=115 Identities=21% Similarity=0.131 Sum_probs=60.0
Q ss_pred ccccccceeEeecCCCCCchHHhhhhhccccccCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccc
Q 043429 47 SISKHSCIFRVSCQSQATDAELATRVGQDRLLKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMD 126 (646)
Q Consensus 47 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~ 126 (646)
+...++-.|..|-.+.-|-..+..-..+ .-+-.+...-..|++||-+|+||||++|.|-...-. .
T Consensus 270 SkeyPTiAfHAsi~nsfGKgalI~llRQ-f~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVC--------------k 334 (572)
T KOG2423|consen 270 SKEYPTIAFHASINNSFGKGALIQLLRQ-FAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVC--------------K 334 (572)
T ss_pred hhhCcceeeehhhcCccchhHHHHHHHH-HHhhccCccceeeeeecCCCCchHHHHHHHhhcccc--------------c
Confidence 3344555555554444444444333211 111122334568999999999999999999653111 1
Q ss_pred cccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch--hhHhhhhhhccceEEEEeCCC
Q 043429 127 LERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS--YEVSRSLAACEGALLVVDASQ 186 (646)
Q Consensus 127 ~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~--~~~~~~l~~ad~~IlVvDa~~ 186 (646)
+.+-.|-|--.+.+++ -..+-|||+||.+--+ .+....|+ |++=|=...+
T Consensus 335 vAPIpGETKVWQYItL-------mkrIfLIDcPGvVyps~dset~ivLk---GvVRVenv~~ 386 (572)
T KOG2423|consen 335 VAPIPGETKVWQYITL-------MKRIFLIDCPGVVYPSSDSETDIVLK---GVVRVENVKN 386 (572)
T ss_pred ccCCCCcchHHHHHHH-------HhceeEecCCCccCCCCCchHHHHhh---ceeeeeecCC
Confidence 1222333332222221 3457799999987433 33333443 4555544444
No 470
>PRK07261 topology modulation protein; Provisional
Probab=94.25 E-value=0.039 Score=53.20 Aligned_cols=22 Identities=50% Similarity=0.522 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
+|+|+|.+|+|||||+..|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998763
No 471
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=94.14 E-value=0.25 Score=50.88 Aligned_cols=82 Identities=9% Similarity=0.061 Sum_probs=43.0
Q ss_pred CCeEEEEEeCCCCccchhh-HhhhhhhccceEEEEeCCCCccHhhHHHHH----HHH-HcCCCeE-EEEeccCCCCCCch
Q 043429 149 EPFCLNLIDTPGHVDFSYE-VSRSLAACEGALLVVDASQGVEAQTLANVY----LAL-ENNLEII-PVLNKIDLPGAEPS 221 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~-~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~----~~~-~~~~piI-vViNKiDl~~~~~~ 221 (646)
..|.+.||||||....... ...++..+|.+|+++.++.- +......+. ... ..+.++. +|.|+.. .....
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~-sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~--~~~~~ 191 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMM-ALYAANNICKGILKYAKSGGVRLGGLICNSRN--TDRED 191 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCchH-HHHHHHHHHHHHHHhCccCCCceEEEEEecCC--ChhHH
Confidence 3688999999986532221 12234469999999887642 222222221 111 1256655 4445532 12223
Q ss_pred HHHHHHHHHhCC
Q 043429 222 RVAREIEEVIGL 233 (646)
Q Consensus 222 ~~~~el~~~l~~ 233 (646)
+..+++.+.++.
T Consensus 192 ~~~~~l~~~~g~ 203 (270)
T cd02040 192 ELIDAFAKRLGT 203 (270)
T ss_pred HHHHHHHHHcCC
Confidence 445566666654
No 472
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=93.99 E-value=0.2 Score=38.37 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=49.0
Q ss_pred EEcccccHHHHHHHHhhcCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcce
Q 043429 454 LLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGY 512 (646)
Q Consensus 454 I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~ 512 (646)
|.+|=...|.|-.+|....+.+.+.+|.+ .+.++..+|..+. ..|...|..+|+|+
T Consensus 1 i~~~Y~~~~~v~~~l~~~~~~i~~~~y~~--~V~~~v~v~~~~~-~~f~~~l~~~t~G~ 56 (56)
T PF09186_consen 1 ISCDYSQYGKVERLLEQNGIEIVDEDYTD--DVTLTVAVPEEEV-EEFKAQLTDLTSGR 56 (56)
T ss_dssp EEE-CCCHHHHHHHHHHTTTEEEEEEECT--TEEEEEEEECCCH-HHHHHHHHHHTTT-
T ss_pred CEechhhHHHHHHHHHHCCCEEEcceecc--eEEEEEEECHHHH-HHHHHHHHHHcCCC
Confidence 45666788999999999999999999964 3999999999998 89999999999995
No 473
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.85 E-value=0.054 Score=49.89 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHhcC
Q 043429 88 FSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 88 I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
|.++|++|+|||||+.+|....+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 68999999999999999986433
No 474
>PRK13760 putative RNA-associated protein; Provisional
Probab=93.82 E-value=0.13 Score=51.78 Aligned_cols=65 Identities=26% Similarity=0.444 Sum_probs=55.6
Q ss_pred EEEEEEcccccHHHHHHHHhhcCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEE
Q 043429 450 VKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASME 516 (646)
Q Consensus 450 ~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~ 516 (646)
|.+.|.+|.+|.|.+++.+.+ -|.+...++.++|......++|-.-- .+|++.|.+.|+|.|...
T Consensus 164 ~~~~v~iP~~~~~~~~~~l~~-~~~i~~eew~~dgs~~~v~~Ip~G~~-~~~~~~~~~~tkG~~~~~ 228 (231)
T PRK13760 164 ARIAVKIPPEYAGKAYGELRK-FGEIKKEEWQSDGSWIAVLEIPAGLQ-NEFYDKLNKLTKGEAETK 228 (231)
T ss_pred EEEEEEECHHHHHHHHHHHHh-hcccchhhccCCCcEEEEEEECCccH-HHHHHHHHHhcCCcEEEE
Confidence 577899999999999999998 77777777766566677789999876 899999999999999765
No 475
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.71 E-value=0.045 Score=55.41 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
-|+|+|++|||||||++.+.+
T Consensus 31 fvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999998866
No 476
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.67 E-value=0.065 Score=43.42 Aligned_cols=20 Identities=40% Similarity=0.494 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHH
Q 043429 88 FSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 88 I~IiG~~~~GKSTLi~~Ll~ 107 (646)
|++.|.+|+||||++++|..
T Consensus 2 i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999976
No 477
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=93.65 E-value=0.062 Score=59.02 Aligned_cols=31 Identities=32% Similarity=0.411 Sum_probs=26.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCc
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTV 112 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i 112 (646)
...+++|+|+|++|+|||||+++|....+..
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 3467899999999999999999999865554
No 478
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.52 E-value=0.067 Score=49.90 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.|+|+|+.|+|||||+..|+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 479
>COG1161 Predicted GTPases [General function prediction only]
Probab=93.50 E-value=0.14 Score=54.66 Aligned_cols=95 Identities=22% Similarity=0.239 Sum_probs=64.1
Q ss_pred EEeCCCCcc-chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCC
Q 043429 155 LIDTPGHVD-FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL 233 (646)
Q Consensus 155 liDTPG~~d-f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~ 233 (646)
+-+.|||.. +..++...+..+|.++-|+||.++........ .....+.|.++|+||+|+..... .++..+.+..
T Consensus 14 i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l--~~~v~~k~~i~vlNK~DL~~~~~---~~~W~~~~~~ 88 (322)
T COG1161 14 IQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPEL--ERIVKEKPKLLVLNKADLAPKEV---TKKWKKYFKK 88 (322)
T ss_pred ccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccH--HHHHccCCcEEEEehhhcCCHHH---HHHHHHHHHh
Confidence 445699864 66788889999999999999998876554432 22234566699999999965432 2333333321
Q ss_pred C-cccccccccccccchhHHHH
Q 043429 234 D-CTNAILCSAKEGIGINEILN 254 (646)
Q Consensus 234 ~-~~~i~~vSAk~g~GV~eLl~ 254 (646)
. ....+.+|++.+.+...+..
T Consensus 89 ~~~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 89 EEGIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred cCCCccEEEEeecccCccchHH
Confidence 1 23468888888888776663
No 480
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=93.49 E-value=0.36 Score=50.76 Aligned_cols=63 Identities=14% Similarity=0.101 Sum_probs=37.7
Q ss_pred CeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHH---HHHH--cCCC-eEEEEeccC
Q 043429 150 PFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY---LALE--NNLE-IIPVLNKID 214 (646)
Q Consensus 150 ~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~---~~~~--~~~p-iIvViNKiD 214 (646)
+|.+.++||||.... ......+..||.+|++++++.- +......+. .... .+++ ..+|+|+.|
T Consensus 115 ~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~~-sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~ 183 (290)
T CHL00072 115 EYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGFD-ALFAANRIAASVREKARTHPLRLAGLVGNRTS 183 (290)
T ss_pred cCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCHH-HHHHHHHHHHHHHHHhccCCCceEEEEEeCCC
Confidence 578999999986432 2233457789999999877543 222222222 2222 2344 348889987
No 481
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.35 E-value=0.084 Score=52.43 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=21.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
.-.-|+|+|++|+|||||++.|...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999864
No 482
>KOG2484 consensus GTPase [General function prediction only]
Probab=93.30 E-value=0.17 Score=54.33 Aligned_cols=68 Identities=24% Similarity=0.253 Sum_probs=47.3
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhH--HHHHHHHHcCCCeEEEEeccCCCCC-CchHHHHHHHHH
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTL--ANVYLALENNLEIIPVLNKIDLPGA-EPSRVAREIEEV 230 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~--~~~~~~~~~~~piIvViNKiDl~~~-~~~~~~~el~~~ 230 (646)
.|..+....+..+|++|-|+||.++.....- +.|.....-+...|+|+||+|+... +.++....++..
T Consensus 135 aY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~ 205 (435)
T KOG2484|consen 135 AYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRRE 205 (435)
T ss_pred HHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhh
Confidence 4667888889999999999999998765443 3333333345889999999998543 334444444443
No 483
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=93.22 E-value=0.28 Score=51.11 Aligned_cols=82 Identities=10% Similarity=0.040 Sum_probs=42.4
Q ss_pred CeEEEEEeCCCCccchh-hHhhhhhhccceEEEEeCCCCccHhhHHH----HHHHHH-cCCCeEEEEeccCCCCCCchHH
Q 043429 150 PFCLNLIDTPGHVDFSY-EVSRSLAACEGALLVVDASQGVEAQTLAN----VYLALE-NNLEIIPVLNKIDLPGAEPSRV 223 (646)
Q Consensus 150 ~~~l~liDTPG~~df~~-~~~~~l~~ad~~IlVvDa~~g~~~qt~~~----~~~~~~-~~~piIvViNKiDl~~~~~~~~ 223 (646)
.|.+.||||||...... .....+..||.+|+++.++.. +...... +....+ .+.++..|++...- .....+.
T Consensus 116 ~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~~-si~~~~~ll~~i~~~~~~~~~~i~gIv~n~r~-~~~~~~~ 193 (279)
T PRK13230 116 GPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPM-AIYAANNICKGIKRFAKRGKSALGGIIYNGRS-VIDAPDI 193 (279)
T ss_pred CCCEEEEecCCccccCCccccccccccceEEEeccchHH-HHHHHHHHHHHHHHHhhcCCCcceEEEEeccC-CCchhHH
Confidence 58899999988542211 122345668999999988642 2222222 212212 25555444433221 1112345
Q ss_pred HHHHHHHhCC
Q 043429 224 AREIEEVIGL 233 (646)
Q Consensus 224 ~~el~~~l~~ 233 (646)
.+++.+.++.
T Consensus 194 ~e~l~~~~g~ 203 (279)
T PRK13230 194 VEEFAKKIGT 203 (279)
T ss_pred HHHHHHHhCC
Confidence 6667666664
No 484
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=93.16 E-value=0.29 Score=41.97 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=40.6
Q ss_pred CCCceEEEEEEEeecc-----------------ceEEecCCCceEEc--------------cce-eeEEEeecccccccc
Q 043429 268 GCPFRALIFDRIIMLM-----------------KLECYPPIKCKWKN--------------FKQ-VGYLSASIRSVADAR 315 (646)
Q Consensus 268 ~~pl~~~vf~~~~d~~-----------------~~i~~~~~~~~~~v--------------aG~-Vg~i~~~i~~~~~~~ 315 (646)
+.||++.|-+++.... +++++++.+....| ||| ++..+.++ +..+++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i-~~~~v~ 80 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMHHEPLEEALPGDNVGFNVKNV-SKKDIK 80 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEEEEEEEEECCcCcCEECCCCEEEEEECCC-CHHHcC
Confidence 4689988887765332 88999998877666 888 55555544 356789
Q ss_pred cCCeeeecC
Q 043429 316 VGDTITHFN 324 (646)
Q Consensus 316 ~GDtl~~~~ 324 (646)
.||.|++.+
T Consensus 81 ~G~vl~~~~ 89 (91)
T cd03693 81 RGDVAGDSK 89 (91)
T ss_pred CcCEEccCC
Confidence 999998754
No 485
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=93.16 E-value=0.51 Score=48.91 Aligned_cols=82 Identities=9% Similarity=0.106 Sum_probs=45.3
Q ss_pred CCeEEEEEeCCCCccch-hhHhhhhhhccceEEEEeCCCCccHhhHHHH----HHHHHcCCCe-EEEEeccCCCCCCchH
Q 043429 149 EPFCLNLIDTPGHVDFS-YEVSRSLAACEGALLVVDASQGVEAQTLANV----YLALENNLEI-IPVLNKIDLPGAEPSR 222 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~-~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~----~~~~~~~~pi-IvViNKiDl~~~~~~~ 222 (646)
+.|.+.||||||..... .....++..||.+++++.... .+......+ ......++++ .+|.|+.+.. ...+
T Consensus 115 ~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~-~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~~--~~~~ 191 (273)
T PRK13232 115 DDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGEL-MAIYAANNICKGLAKFAKGGARLGGIICNSRNVD--GERE 191 (273)
T ss_pred ccCCEEEEecCCCeeECCEeccccccccceEEEecCchH-HHHHHHHHHHHHHHHHhCCCCceeEEEEeCCCCC--ccHH
Confidence 35889999998864311 111223457899999987643 222222222 2112235665 4888976521 1245
Q ss_pred HHHHHHHHhCC
Q 043429 223 VAREIEEVIGL 233 (646)
Q Consensus 223 ~~~el~~~l~~ 233 (646)
..+++++.++.
T Consensus 192 ~~e~l~~~~~~ 202 (273)
T PRK13232 192 LLEAFAKKLGS 202 (273)
T ss_pred HHHHHHHHhCC
Confidence 56677777653
No 486
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.11 E-value=0.066 Score=53.85 Aligned_cols=21 Identities=33% Similarity=0.298 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
-++|+|++|||||||++-+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999998754
No 487
>PRK06217 hypothetical protein; Validated
Probab=93.11 E-value=0.087 Score=51.25 Aligned_cols=25 Identities=20% Similarity=0.225 Sum_probs=21.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
.+|+|+|.+|+|||||+.+|....+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999987543
No 488
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.07 E-value=0.24 Score=47.28 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHH
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
+-|+|+|..|+|||||+++++.
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~ 24 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVR 24 (161)
T ss_pred cEEEEEecCCCChhhHHHHHHH
Confidence 4589999999999999999976
No 489
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.98 E-value=0.072 Score=52.87 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=24.6
Q ss_pred HHHHHhCCCcccc---cccccccccchhHHHHHHHHhC
Q 043429 226 EIEEVIGLDCTNA---ILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 226 el~~~l~~~~~~i---~~vSAk~g~GV~eLl~~I~~~i 260 (646)
.|.+.+..++.-. =++||.+-+-+.|+++.+.+..
T Consensus 146 AIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA 183 (240)
T COG1126 146 AIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA 183 (240)
T ss_pred HHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH
Confidence 4555665544322 2699999999999999887654
No 490
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=92.96 E-value=0.08 Score=49.42 Aligned_cols=26 Identities=38% Similarity=0.486 Sum_probs=23.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
.+||.|.|.||+|||||..++...++
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~ 32 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG 32 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC
Confidence 46999999999999999999987554
No 491
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.84 E-value=0.069 Score=50.75 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=17.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
||+|+|.+++|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6899999999999999999875
No 492
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=92.78 E-value=1.8 Score=39.85 Aligned_cols=119 Identities=16% Similarity=0.124 Sum_probs=63.3
Q ss_pred EEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc----c
Q 043429 89 SIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD----F 164 (646)
Q Consensus 89 ~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d----f 164 (646)
.+.| .|+|||+++-.|+... +.+|..+.. ++ ....+.+.+++.+|.-. .
T Consensus 4 ~~~~-~~~Gkt~~~~~l~~~l-------------------~~~~~~v~~------~k-p~~~~d~vliEGaGg~~~p~~~ 56 (134)
T cd03109 4 FGTG-TDIGKTVATAILARAL-------------------KEKGYRVAP------LK-PVQTYDFVLVEGAGGLCVPLKE 56 (134)
T ss_pred EeCC-CCcCHHHHHHHHHHHH-------------------HHCCCeEEE------Ee-cCCCCCEEEEECCCccccCCCC
Confidence 3455 6799999998887621 112222221 11 01126777999886432 1
Q ss_pred hhhHhhhhhhccc-eEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCCchHHHHHHHHHhCCC
Q 043429 165 SYEVSRSLAACEG-ALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPGAEPSRVAREIEEVIGLD 234 (646)
Q Consensus 165 ~~~~~~~l~~ad~-~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~~~~~~~el~~~l~~~ 234 (646)
.......++..+. +++|.+...+.-.++......+...+++ .-++.|.++..........+.+.+.++.+
T Consensus 57 ~~~~~d~~~~~~~~vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~~~~~~~~i~~~~gip 128 (134)
T cd03109 57 DFTNADVAKELNLPAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEKEGLATLNVETIERLTGIP 128 (134)
T ss_pred CCCHHHHHHHhCCCEEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCCCccchhhhhHHHHHHhcCCC
Confidence 1112223333344 5677766666444455666666667777 45777887753321122344555555543
No 493
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.66 E-value=0.1 Score=46.78 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHh
Q 043429 88 FSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 88 I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
|+|.|.+|+||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999875
No 494
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.65 E-value=0.11 Score=50.27 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=22.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
+..|+|+|.+||||||++.+|....+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999986443
No 495
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.48 E-value=0.11 Score=50.37 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHH
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
..++|+|++|+|||||++.++.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4789999999999999998864
No 496
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.47 E-value=0.11 Score=46.36 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
.++.|+|++|+||||++..++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc
Confidence 47899999999999999999874
No 497
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.44 E-value=0.093 Score=48.03 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.++|+|+.|+|||||++.|..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g 33 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAG 33 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTT
T ss_pred EEEEEccCCCccccceeeecc
Confidence 689999999999999998865
No 498
>PRK13949 shikimate kinase; Provisional
Probab=92.42 E-value=0.12 Score=49.74 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
++|.|+|.+|+|||||...|....+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999998887543
No 499
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.38 E-value=0.1 Score=51.21 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHh
Q 043429 88 FSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 88 I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
|+|+|++|+|||||++.|...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999773
No 500
>PRK05480 uridine/cytidine kinase; Provisional
Probab=92.33 E-value=0.13 Score=50.97 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
...|+|.|.+|+|||||++.|...
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999763
Done!