Query 043429
Match_columns 646
No_of_seqs 633 out of 4133
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 08:08:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043429.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043429hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ywe_A GTP-binding protein LEP 100.0 2E-150 8E-155 1271.4 55.3 562 81-642 2-600 (600)
2 3cb4_D GTP-binding protein LEP 100.0 1E-148 4E-153 1259.6 54.1 562 83-645 2-598 (599)
3 4fn5_A EF-G 1, elongation fact 100.0 2.9E-77 9.9E-82 693.9 37.7 440 80-532 8-705 (709)
4 3j25_A Tetracycline resistance 100.0 3.9E-78 1.3E-82 692.7 15.2 451 84-562 1-637 (638)
5 2rdo_7 EF-G, elongation factor 100.0 8.6E-73 2.9E-77 654.1 46.9 433 81-526 6-691 (704)
6 2xex_A Elongation factor G; GT 100.0 8.9E-73 3.1E-77 653.4 44.5 430 80-526 5-679 (693)
7 1dar_A EF-G, elongation factor 100.0 1.3E-72 4.6E-77 651.8 32.9 429 82-526 9-680 (691)
8 2dy1_A Elongation factor G; tr 100.0 2E-70 6.7E-75 631.6 40.7 430 80-526 4-650 (665)
9 1n0u_A EF-2, elongation factor 100.0 1.6E-65 5.5E-70 603.8 39.1 432 82-525 16-804 (842)
10 3vqt_A RF-3, peptide chain rel 100.0 2.6E-62 9E-67 551.1 26.9 364 83-460 29-547 (548)
11 3tr5_A RF-3, peptide chain rel 100.0 3.4E-52 1.2E-56 466.6 33.4 327 83-424 11-475 (528)
12 2h5e_A Peptide chain release f 100.0 4.1E-50 1.4E-54 450.2 32.9 324 83-423 11-475 (529)
13 3e3x_A BIPA; MCSG,PSI2, struct 100.0 2.9E-43 1E-47 365.4 20.1 203 309-538 4-215 (332)
14 3j2k_7 ERF3, eukaryotic polype 100.0 1.9E-30 6.3E-35 285.4 22.7 239 83-326 15-329 (439)
15 1zun_B Sulfate adenylate trans 100.0 5.1E-30 1.7E-34 281.7 20.1 241 79-326 18-328 (434)
16 3mca_A HBS1, elongation factor 100.0 1.7E-30 5.7E-35 295.2 13.6 238 82-326 174-491 (592)
17 2c78_A Elongation factor TU-A; 100.0 2E-29 6.8E-34 274.6 19.7 236 84-324 10-308 (405)
18 1jny_A EF-1-alpha, elongation 100.0 1.6E-29 5.3E-34 277.9 18.6 238 83-326 4-319 (435)
19 1d2e_A Elongation factor TU (E 100.0 3.8E-29 1.3E-33 271.7 19.3 234 86-324 4-290 (397)
20 1r5b_A Eukaryotic peptide chai 100.0 5.5E-30 1.9E-34 283.8 12.9 240 81-326 39-358 (467)
21 1f60_A Elongation factor EEF1A 100.0 2.8E-28 9.4E-33 269.5 20.6 235 85-325 7-329 (458)
22 1g7s_A Translation initiation 100.0 3.3E-29 1.1E-33 283.8 9.7 307 85-420 5-437 (594)
23 1kk1_A EIF2gamma; initiation o 100.0 2.8E-27 9.7E-32 258.0 23.0 229 83-324 8-316 (410)
24 1s0u_A EIF-2-gamma, translatio 99.9 5.8E-27 2E-31 255.4 22.8 185 83-279 6-215 (408)
25 3avx_A Elongation factor TS, e 99.9 1.7E-27 5.7E-32 280.2 18.0 238 83-325 294-582 (1289)
26 3p26_A Elongation factor 1 alp 99.9 5.9E-27 2E-31 260.7 21.3 237 84-325 32-363 (483)
27 1wb1_A Translation elongation 99.9 1.2E-27 4.1E-32 265.8 14.1 224 85-321 19-281 (482)
28 2elf_A Protein translation elo 99.9 6E-27 2.1E-31 251.6 13.5 207 86-322 22-275 (370)
29 3sjy_A Translation initiation 99.9 5.7E-26 2E-30 247.1 19.4 241 84-325 7-309 (403)
30 1zo1_I IF2, translation initia 99.9 2E-27 6.7E-32 263.3 5.2 389 84-523 3-482 (501)
31 3izq_1 HBS1P, elongation facto 99.9 3.4E-26 1.2E-30 260.5 15.2 237 84-325 166-497 (611)
32 3qq5_A Small GTP-binding prote 99.9 3.9E-27 1.3E-31 256.5 0.1 165 77-263 26-197 (423)
33 3izy_P Translation initiation 99.9 3.3E-26 1.1E-30 255.4 4.4 180 85-283 4-191 (537)
34 4dkx_A RAS-related protein RAB 99.9 9.4E-23 3.2E-27 203.0 15.6 157 86-262 14-176 (216)
35 2hup_A RAS-related protein RAB 99.9 1E-21 3.6E-26 192.4 15.7 161 83-262 27-193 (201)
36 2efe_B Small GTP-binding prote 99.9 2E-21 6.9E-26 185.4 17.2 160 84-263 11-176 (181)
37 3bc1_A RAS-related protein RAB 99.9 2.1E-21 7E-26 187.0 17.0 160 81-260 7-183 (195)
38 2fg5_A RAB-22B, RAS-related pr 99.9 2E-21 6.9E-26 188.5 16.4 160 84-263 22-187 (192)
39 2lkc_A Translation initiation 99.9 4E-22 1.4E-26 189.8 11.0 157 84-260 7-169 (178)
40 2atx_A Small GTP binding prote 99.9 1.7E-21 5.7E-26 188.9 15.3 167 77-263 10-194 (194)
41 2p5s_A RAS and EF-hand domain 99.9 1.8E-21 6.2E-26 189.9 15.4 163 79-261 22-196 (199)
42 3tkl_A RAS-related protein RAB 99.9 2.8E-21 9.6E-26 187.0 16.6 159 83-261 14-178 (196)
43 1zj6_A ADP-ribosylation factor 99.9 2.3E-21 8E-26 186.9 15.8 160 84-265 15-181 (187)
44 1ek0_A Protein (GTP-binding pr 99.9 3.8E-21 1.3E-25 180.9 16.9 156 86-261 4-168 (170)
45 1z0f_A RAB14, member RAS oncog 99.9 3.4E-21 1.2E-25 183.1 16.6 159 82-260 12-176 (179)
46 2gf9_A RAS-related protein RAB 99.9 2.6E-21 8.9E-26 186.9 16.0 161 81-261 18-184 (189)
47 1g16_A RAS-related protein SEC 99.9 2.6E-21 8.7E-26 182.3 15.4 157 85-261 3-164 (170)
48 1z2a_A RAS-related protein RAB 99.9 1.9E-21 6.6E-26 182.8 14.4 157 84-260 4-165 (168)
49 1wms_A RAB-9, RAB9, RAS-relate 99.9 2.5E-21 8.7E-26 184.0 15.3 159 84-261 6-173 (177)
50 2hjg_A GTP-binding protein ENG 99.9 1.8E-21 6.3E-26 213.7 16.2 224 5-261 107-348 (436)
51 1r2q_A RAS-related protein RAB 99.9 3.4E-21 1.2E-25 181.2 15.8 158 85-262 6-169 (170)
52 2ew1_A RAS-related protein RAB 99.9 2.8E-21 9.7E-26 189.8 15.9 159 83-261 24-188 (201)
53 3t1o_A Gliding protein MGLA; G 99.9 1.8E-21 6.1E-26 188.1 14.2 169 83-260 12-190 (198)
54 1zbd_A Rabphilin-3A; G protein 99.9 3.9E-21 1.3E-25 187.7 16.7 158 83-260 6-169 (203)
55 2hxs_A RAB-26, RAS-related pro 99.9 2.6E-21 8.8E-26 184.2 15.0 159 84-262 5-173 (178)
56 4bas_A ADP-ribosylation factor 99.9 2.1E-21 7.1E-26 188.5 14.5 162 81-262 13-189 (199)
57 3tw8_B RAS-related protein RAB 99.9 1.9E-21 6.5E-26 185.1 13.5 159 83-261 7-170 (181)
58 1ky3_A GTP-binding protein YPT 99.9 1.3E-21 4.5E-26 186.5 12.1 159 83-260 6-176 (182)
59 1z0j_A RAB-22, RAS-related pro 99.9 6.5E-21 2.2E-25 179.5 16.5 158 85-262 6-169 (170)
60 1z08_A RAS-related protein RAB 99.9 1.9E-21 6.5E-26 183.4 12.8 158 84-261 5-168 (170)
61 2g6b_A RAS-related protein RAB 99.9 5.9E-21 2E-25 182.0 16.3 161 83-262 8-174 (180)
62 2oil_A CATX-8, RAS-related pro 99.9 4E-21 1.4E-25 186.0 15.3 159 82-260 22-186 (193)
63 3q85_A GTP-binding protein REM 99.9 4.5E-21 1.5E-25 180.9 15.1 156 85-260 2-165 (169)
64 2fu5_C RAS-related protein RAB 99.9 1.4E-21 4.9E-26 187.2 11.8 159 83-261 6-170 (183)
65 2a5j_A RAS-related protein RAB 99.9 3.4E-21 1.2E-25 186.5 14.4 158 83-260 19-182 (191)
66 2il1_A RAB12; G-protein, GDP, 99.9 2.6E-21 8.9E-26 187.9 13.4 159 83-260 24-188 (192)
67 1r8s_A ADP-ribosylation factor 99.9 9.3E-21 3.2E-25 177.8 16.7 150 87-261 2-161 (164)
68 3oes_A GTPase rhebl1; small GT 99.9 3.1E-21 1.1E-25 188.5 14.0 166 77-263 16-188 (201)
69 3kkq_A RAS-related protein M-R 99.9 1.1E-20 3.7E-25 181.1 17.3 156 84-260 17-180 (183)
70 3t5g_A GTP-binding protein RHE 99.9 4.8E-21 1.6E-25 183.2 14.8 159 83-262 4-169 (181)
71 2fn4_A P23, RAS-related protei 99.9 4.1E-21 1.4E-25 182.8 14.2 159 82-261 6-171 (181)
72 2y8e_A RAB-protein 6, GH09086P 99.9 6.7E-21 2.3E-25 181.0 15.6 157 86-262 15-177 (179)
73 3dz8_A RAS-related protein RAB 99.9 2.1E-21 7.3E-26 188.0 12.3 158 83-260 21-184 (191)
74 2bcg_Y Protein YP2, GTP-bindin 99.9 7.3E-21 2.5E-25 186.3 16.1 159 83-261 6-170 (206)
75 2dyk_A GTP-binding protein; GT 99.9 3.1E-21 1.1E-25 180.3 12.8 154 85-261 1-161 (161)
76 1upt_A ARL1, ADP-ribosylation 99.9 1E-20 3.5E-25 178.6 16.4 157 84-262 6-169 (171)
77 1vg8_A RAS-related protein RAB 99.9 3.8E-21 1.3E-25 188.0 13.8 160 83-261 6-174 (207)
78 1f6b_A SAR1; gtpases, N-termin 99.8 4.5E-21 1.5E-25 187.5 14.1 151 85-260 25-197 (198)
79 2f7s_A C25KG, RAS-related prot 99.8 3.4E-21 1.2E-25 190.3 13.2 159 82-260 22-197 (217)
80 1c1y_A RAS-related protein RAP 99.8 9E-21 3.1E-25 178.0 15.5 155 86-260 4-165 (167)
81 2bme_A RAB4A, RAS-related prot 99.8 7.9E-21 2.7E-25 182.3 15.4 159 83-261 8-172 (186)
82 1m2o_B GTP-binding protein SAR 99.8 7.9E-21 2.7E-25 184.4 15.6 150 86-260 24-190 (190)
83 1fzq_A ADP-ribosylation factor 99.8 1.3E-20 4.4E-25 181.4 16.6 155 83-262 14-178 (181)
84 2nzj_A GTP-binding protein REM 99.8 8.7E-21 3E-25 179.8 15.2 156 85-261 4-168 (175)
85 3clv_A RAB5 protein, putative; 99.8 7.7E-21 2.7E-25 184.1 14.9 107 151-260 93-202 (208)
86 4dsu_A GTPase KRAS, isoform 2B 99.8 1.7E-20 5.7E-25 180.1 16.8 156 85-261 4-165 (189)
87 3cph_A RAS-related protein SEC 99.8 1E-20 3.5E-25 185.8 15.6 159 83-261 18-181 (213)
88 2b6h_A ADP-ribosylation factor 99.8 1.6E-20 5.6E-25 182.5 16.8 159 78-261 22-190 (192)
89 3gj0_A GTP-binding nuclear pro 99.8 2.1E-21 7.2E-26 192.6 10.7 160 82-261 12-174 (221)
90 3bwd_D RAC-like GTP-binding pr 99.8 1.5E-21 5.1E-26 186.5 8.9 160 84-263 7-182 (182)
91 1zd9_A ADP-ribosylation factor 99.8 1.5E-20 5E-25 181.8 16.0 155 84-262 21-185 (188)
92 2h17_A ADP-ribosylation factor 99.8 9.5E-21 3.2E-25 181.8 14.5 151 84-259 20-180 (181)
93 2j0v_A RAC-like GTP-binding pr 99.8 5E-21 1.7E-25 188.4 12.8 162 83-264 7-182 (212)
94 3q72_A GTP-binding protein RAD 99.8 1E-20 3.4E-25 177.9 14.3 154 85-260 2-162 (166)
95 1u8z_A RAS-related protein RAL 99.8 1.8E-20 6.1E-25 175.7 15.8 155 85-260 4-165 (168)
96 1z06_A RAS-related protein RAB 99.8 1.4E-20 4.7E-25 181.8 15.4 159 83-261 18-187 (189)
97 1x3s_A RAS-related protein RAB 99.8 1.4E-20 4.8E-25 181.8 15.3 158 85-262 15-178 (195)
98 1kao_A RAP2A; GTP-binding prot 99.8 1.5E-20 5.3E-25 176.0 15.2 154 86-260 4-164 (167)
99 2h57_A ADP-ribosylation factor 99.8 1.1E-20 3.8E-25 182.6 14.6 158 84-261 20-186 (190)
100 1mh1_A RAC1; GTP-binding, GTPa 99.8 1E-20 3.6E-25 181.0 13.9 160 85-264 5-182 (186)
101 1svi_A GTP-binding protein YSX 99.8 1.6E-20 5.5E-25 181.7 15.3 165 77-261 15-194 (195)
102 2o52_A RAS-related protein RAB 99.8 6.4E-21 2.2E-25 186.5 12.4 159 83-261 23-187 (200)
103 2atv_A RERG, RAS-like estrogen 99.8 2.1E-20 7.1E-25 181.8 15.9 164 75-260 18-189 (196)
104 2erx_A GTP-binding protein DI- 99.8 3.3E-20 1.1E-24 174.8 16.8 157 86-263 4-168 (172)
105 3q3j_B RHO-related GTP-binding 99.8 1.1E-20 3.9E-25 187.0 14.1 161 83-263 25-204 (214)
106 4gzl_A RAS-related C3 botulinu 99.8 1.3E-20 4.5E-25 184.9 14.4 157 84-260 29-203 (204)
107 2bov_A RAla, RAS-related prote 99.8 3.1E-20 1.1E-24 181.1 16.9 158 83-261 12-176 (206)
108 3cpj_B GTP-binding protein YPT 99.8 1E-20 3.6E-25 188.2 13.6 160 83-262 11-176 (223)
109 1ksh_A ARF-like protein 2; sma 99.8 1.8E-20 6.3E-25 180.1 14.6 155 83-262 16-180 (186)
110 2a9k_A RAS-related protein RAL 99.8 3.1E-20 1E-24 177.7 16.0 155 85-260 18-179 (187)
111 4dcu_A GTP-binding protein ENG 99.8 2.3E-20 7.7E-25 206.2 17.3 225 4-261 126-368 (456)
112 2ce2_X GTPase HRAS; signaling 99.8 5.1E-20 1.7E-24 172.0 17.1 154 86-260 4-163 (166)
113 4dhe_A Probable GTP-binding pr 99.8 3.1E-21 1E-25 191.3 9.3 174 77-266 21-215 (223)
114 3cbq_A GTP-binding protein REM 99.8 1.9E-20 6.4E-25 182.8 14.5 163 83-265 21-191 (195)
115 3reg_A RHO-like small GTPase; 99.8 2E-20 6.9E-25 181.4 14.5 159 84-262 22-188 (194)
116 2gf0_A GTP-binding protein DI- 99.8 5.3E-20 1.8E-24 178.5 17.4 159 84-263 7-172 (199)
117 1moz_A ARL1, ADP-ribosylation 99.8 1.4E-20 4.7E-25 180.1 12.2 154 83-261 16-179 (183)
118 1wf3_A GTP-binding protein; GT 99.8 2.5E-20 8.6E-25 194.7 15.0 157 85-262 7-173 (301)
119 3pqc_A Probable GTP-binding pr 99.8 4.6E-20 1.6E-24 177.9 15.3 164 77-261 15-193 (195)
120 1m7b_A RND3/RHOE small GTP-bin 99.8 4E-20 1.4E-24 178.0 14.3 157 84-260 6-181 (184)
121 2yc2_C IFT27, small RAB-relate 99.8 7.4E-21 2.5E-25 185.6 9.1 160 84-261 19-191 (208)
122 2q3h_A RAS homolog gene family 99.8 4.2E-20 1.4E-24 180.0 14.1 160 83-262 18-195 (201)
123 3c5c_A RAS-like protein 12; GD 99.8 6.6E-20 2.3E-24 177.3 15.3 155 84-260 20-184 (187)
124 3ihw_A Centg3; RAS, centaurin, 99.8 1E-19 3.5E-24 175.7 16.6 151 84-260 19-178 (184)
125 2fv8_A H6, RHO-related GTP-bin 99.8 4.9E-20 1.7E-24 181.0 14.3 159 85-263 25-201 (207)
126 4djt_A GTP-binding nuclear pro 99.8 1.7E-20 5.9E-25 185.4 11.0 161 84-262 10-175 (218)
127 2gco_A H9, RHO-related GTP-bin 99.8 6.9E-20 2.3E-24 179.1 14.8 156 85-260 25-198 (201)
128 3con_A GTPase NRAS; structural 99.8 1.1E-19 3.8E-24 175.2 16.1 155 86-261 22-182 (190)
129 3iev_A GTP-binding protein ERA 99.8 9E-20 3.1E-24 191.2 16.5 161 84-262 9-182 (308)
130 2wji_A Ferrous iron transport 99.8 5.7E-20 2E-24 173.9 13.3 150 86-260 4-163 (165)
131 3l0i_B RAS-related protein RAB 99.8 2.6E-21 9E-26 188.8 3.8 160 83-262 31-196 (199)
132 2x77_A ADP-ribosylation factor 99.8 3.5E-20 1.2E-24 178.8 11.6 154 84-262 21-184 (189)
133 2iwr_A Centaurin gamma 1; ANK 99.8 1.3E-19 4.6E-24 172.6 15.5 150 85-260 7-167 (178)
134 1gwn_A RHO-related GTP-binding 99.8 9.4E-20 3.2E-24 179.4 14.2 158 83-260 26-202 (205)
135 2j1l_A RHO-related GTP-binding 99.8 9.8E-20 3.4E-24 180.1 13.6 158 84-261 33-208 (214)
136 2fh5_B SR-beta, signal recogni 99.8 2.6E-19 9E-24 176.3 15.6 157 84-260 6-214 (214)
137 3iby_A Ferrous iron transport 99.8 5.8E-20 2E-24 187.6 11.0 151 85-259 1-164 (256)
138 2wjg_A FEOB, ferrous iron tran 99.8 2.6E-19 8.7E-24 172.2 12.6 154 85-263 7-170 (188)
139 3llu_A RAS-related GTP-binding 99.8 2.2E-19 7.7E-24 174.8 12.2 162 81-260 16-195 (196)
140 3i8s_A Ferrous iron transport 99.8 1.7E-19 5.9E-24 185.9 11.9 154 86-263 4-170 (274)
141 2qu8_A Putative nucleolar GTP- 99.8 7E-19 2.4E-23 175.7 15.8 159 83-261 27-204 (228)
142 2g3y_A GTP-binding protein GEM 99.8 5.3E-19 1.8E-23 175.2 14.7 159 84-261 36-202 (211)
143 3o47_A ADP-ribosylation factor 99.8 4.8E-19 1.6E-23 187.4 15.2 152 85-261 165-326 (329)
144 2gj8_A MNME, tRNA modification 99.8 1.5E-19 5.1E-24 172.6 9.8 151 86-262 5-166 (172)
145 1mky_A Probable GTP-binding pr 99.8 7E-19 2.4E-23 193.3 16.5 155 86-262 2-166 (439)
146 2cxx_A Probable GTP-binding pr 99.8 2.6E-19 8.9E-24 172.1 10.8 153 86-262 2-184 (190)
147 3a1s_A Iron(II) transport prot 99.8 3.7E-19 1.3E-23 181.8 12.3 153 85-261 5-166 (258)
148 3r7w_A Gtpase1, GTP-binding pr 99.8 1E-18 3.5E-23 183.1 15.5 159 86-262 4-181 (307)
149 1ega_A Protein (GTP-binding pr 99.8 3.3E-19 1.1E-23 186.2 11.5 157 85-262 8-175 (301)
150 2cjw_A GTP-binding protein GEM 99.8 1.9E-18 6.6E-23 168.0 16.0 157 85-260 6-170 (192)
151 3k53_A Ferrous iron transport 99.8 9.6E-19 3.3E-23 179.8 14.2 154 85-262 3-166 (271)
152 3th5_A RAS-related C3 botulinu 99.6 1.6E-20 5.3E-25 183.9 0.0 158 83-260 28-203 (204)
153 1mky_A Probable GTP-binding pr 99.8 2.4E-18 8.1E-23 189.1 16.7 193 50-260 138-353 (439)
154 3gee_A MNME, tRNA modification 99.8 5.8E-19 2E-23 195.2 11.2 156 86-264 234-401 (476)
155 2zej_A Dardarin, leucine-rich 99.8 2.5E-19 8.6E-24 172.6 7.2 162 86-262 3-178 (184)
156 3lvq_E ARF-GAP with SH3 domain 99.8 3.6E-18 1.2E-22 190.4 17.4 154 84-262 321-484 (497)
157 2hjg_A GTP-binding protein ENG 99.8 3.8E-19 1.3E-23 195.3 8.6 154 86-262 4-165 (436)
158 3b1v_A Ferrous iron uptake tra 99.8 8.7E-19 3E-23 180.4 10.0 153 85-262 3-164 (272)
159 2xtp_A GTPase IMAP family memb 99.8 2.1E-18 7.2E-23 175.7 12.6 162 83-262 20-208 (260)
160 2wkq_A NPH1-1, RAS-related C3 99.8 2.7E-18 9.4E-23 180.2 13.3 159 85-263 155-331 (332)
161 1xzp_A Probable tRNA modificat 99.7 1.2E-17 3.9E-22 185.0 14.1 152 86-261 244-404 (482)
162 2f9l_A RAB11B, member RAS onco 99.7 2.7E-17 9.1E-22 160.4 15.0 158 84-261 4-167 (199)
163 4dcu_A GTP-binding protein ENG 99.7 4.7E-18 1.6E-22 187.7 8.6 155 85-262 23-185 (456)
164 1lnz_A SPO0B-associated GTP-bi 99.7 8.2E-18 2.8E-22 178.5 9.7 157 85-262 158-330 (342)
165 1oix_A RAS-related protein RAB 99.7 9.7E-17 3.3E-21 155.7 14.9 158 83-260 27-190 (191)
166 2e87_A Hypothetical protein PH 99.7 1.2E-16 4.1E-21 170.8 15.7 156 84-261 166-335 (357)
167 3geh_A MNME, tRNA modification 99.7 1E-17 3.4E-22 184.6 7.2 154 86-264 225-386 (462)
168 3r7w_B Gtpase2, GTP-binding pr 99.7 7.5E-17 2.6E-21 168.7 12.8 156 87-263 1-175 (331)
169 3t5d_A Septin-7; GTP-binding p 99.7 5.7E-17 2E-21 166.8 11.6 167 85-261 8-203 (274)
170 3lxw_A GTPase IMAP family memb 99.7 1.6E-16 5.5E-21 161.1 13.3 159 85-262 21-208 (247)
171 3dpu_A RAB family protein; roc 99.7 6.3E-17 2.2E-21 182.1 10.2 161 82-263 38-209 (535)
172 2qtf_A Protein HFLX, GTP-bindi 99.7 2.5E-16 8.6E-21 168.5 13.3 161 84-264 178-356 (364)
173 1nrj_B SR-beta, signal recogni 99.7 3.1E-16 1E-20 154.7 12.5 143 83-248 10-170 (218)
174 3c5h_A Glucocorticoid receptor 99.7 1.9E-16 6.5E-21 161.3 10.5 174 83-260 17-253 (255)
175 3lxx_A GTPase IMAP family memb 99.6 7.8E-16 2.7E-20 154.8 13.1 161 80-261 24-213 (239)
176 2aka_B Dynamin-1; fusion prote 99.6 7.4E-16 2.5E-20 159.7 10.6 109 150-259 124-250 (299)
177 1jwy_B Dynamin A GTPase domain 99.6 2.5E-15 8.6E-20 157.1 10.0 112 150-262 130-262 (315)
178 2ged_A SR-beta, signal recogni 99.6 8.1E-15 2.8E-19 141.3 10.1 125 83-230 46-184 (193)
179 1pui_A ENGB, probable GTP-bind 99.6 1.5E-14 5.3E-19 141.4 12.1 163 80-262 21-199 (210)
180 2qag_A Septin-2, protein NEDD5 99.5 1.5E-14 5E-19 154.8 11.6 170 85-263 37-238 (361)
181 2j69_A Bacterial dynamin-like 99.5 1.1E-14 3.8E-19 168.3 10.8 111 151-261 174-324 (695)
182 1wxq_A GTP-binding protein; st 99.5 4.4E-15 1.5E-19 160.6 5.4 158 87-262 2-271 (397)
183 3def_A T7I23.11 protein; chlor 99.5 8E-14 2.8E-18 142.3 12.0 115 85-217 36-165 (262)
184 3p32_A Probable GTPase RV1496/ 99.5 2E-14 6.8E-19 153.5 6.5 107 149-262 170-284 (355)
185 1udx_A The GTP-binding protein 99.5 1E-13 3.5E-18 150.5 11.1 157 84-262 156-325 (416)
186 2p67_A LAO/AO transport system 99.5 3.3E-14 1.1E-18 150.9 5.9 105 150-261 148-260 (341)
187 2wsm_A Hydrogenase expression/ 99.4 7.9E-14 2.7E-18 137.7 7.0 169 83-262 28-214 (221)
188 2x2e_A Dynamin-1; nitration, h 99.4 1.1E-13 3.6E-18 147.7 7.7 108 150-258 129-254 (353)
189 1h65_A Chloroplast outer envel 99.4 9.9E-13 3.4E-17 134.8 13.7 116 85-218 39-169 (270)
190 3t34_A Dynamin-related protein 99.4 1.2E-12 4.2E-17 139.8 9.9 105 150-255 135-254 (360)
191 2qnr_A Septin-2, protein NEDD5 99.4 1.7E-12 5.7E-17 135.4 10.6 166 86-261 19-213 (301)
192 2www_A Methylmalonic aciduria 99.3 2.1E-12 7.3E-17 137.4 10.0 106 149-261 165-278 (349)
193 2qpt_A EH domain-containing pr 99.3 1.5E-12 5.2E-17 146.4 9.0 213 151-364 154-408 (550)
194 3zvr_A Dynamin-1; hydrolase, D 99.3 5.4E-12 1.8E-16 145.4 11.7 170 84-258 50-274 (772)
195 3ohm_A Guanine nucleotide-bind 99.3 7.1E-12 2.4E-16 131.6 11.4 127 131-261 151-317 (327)
196 4fid_A G protein alpha subunit 99.3 8.2E-12 2.8E-16 131.6 9.1 126 131-260 145-326 (340)
197 2qag_C Septin-7; cell cycle, c 99.2 1.1E-11 3.9E-16 134.4 10.2 166 86-261 32-226 (418)
198 1jal_A YCHF protein; nucleotid 99.2 2.9E-11 1E-15 128.5 13.0 84 86-186 3-108 (363)
199 4a9a_A Ribosome-interacting GT 99.2 6.5E-11 2.2E-15 126.5 14.8 114 82-216 69-195 (376)
200 1yrb_A ATP(GTP)binding protein 99.2 2.4E-11 8.4E-16 123.1 10.2 110 150-261 108-256 (262)
201 2dby_A GTP-binding protein; GD 99.2 6E-11 2E-15 126.8 13.6 86 86-186 2-111 (368)
202 1cip_A Protein (guanine nucleo 99.2 3.4E-11 1.2E-15 128.0 9.1 126 131-260 177-342 (353)
203 2hf9_A Probable hydrogenase ni 99.2 9.8E-11 3.4E-15 115.8 10.5 164 83-260 36-222 (226)
204 2qm8_A GTPase/ATPase; G protei 99.1 1.1E-10 3.7E-15 123.6 8.2 105 150-261 147-260 (337)
205 3ec1_A YQEH GTPase; atnos1, at 99.1 3.5E-11 1.2E-15 129.0 3.8 209 9-248 98-317 (369)
206 1zcb_A G alpha I/13; GTP-bindi 99.1 1.3E-10 4.4E-15 124.0 8.1 124 133-260 187-351 (362)
207 1u0l_A Probable GTPase ENGC; p 99.1 2.1E-10 7.3E-15 119.4 8.8 104 152-258 64-169 (301)
208 1azs_C GS-alpha; complex (lyas 99.1 2.2E-10 7.6E-15 123.4 8.6 124 133-260 203-383 (402)
209 2j37_W Signal recognition part 99.0 1.1E-09 3.8E-14 121.3 13.3 169 83-259 99-310 (504)
210 2xtz_A Guanine nucleotide-bind 99.0 2.2E-10 7.7E-15 121.7 5.9 112 149-260 181-343 (354)
211 3h2y_A GTPase family protein; 99.0 1.2E-10 4E-15 124.8 3.0 209 9-247 96-315 (368)
212 2qag_B Septin-6, protein NEDD5 98.7 4.3E-08 1.5E-12 106.1 11.2 149 82-244 39-218 (427)
213 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 7.5E-08 2.6E-12 103.4 12.4 87 86-186 21-127 (392)
214 3l82_B F-box only protein 4; T 98.6 3.1E-08 1.1E-12 96.4 7.1 100 160-262 111-223 (227)
215 1tq4_A IIGP1, interferon-induc 98.6 3.3E-07 1.1E-11 99.0 14.6 160 86-262 70-253 (413)
216 2ohf_A Protein OLA1, GTP-bindi 98.6 3.5E-08 1.2E-12 105.9 6.7 150 86-262 23-195 (396)
217 2yv5_A YJEQ protein; hydrolase 98.6 2.5E-08 8.5E-13 103.8 5.4 95 161-258 66-165 (302)
218 2v3c_C SRP54, signal recogniti 98.6 1.2E-07 4.1E-12 103.4 9.5 109 149-262 179-311 (432)
219 3l2o_B F-box only protein 4; s 98.5 3.1E-07 1E-11 93.6 8.5 101 159-262 195-308 (312)
220 3sop_A Neuronal-specific septi 98.4 4.4E-07 1.5E-11 92.8 9.6 120 86-217 3-154 (270)
221 1puj_A YLQF, conserved hypothe 98.3 9.3E-07 3.2E-11 90.9 8.0 100 155-261 3-105 (282)
222 3dm5_A SRP54, signal recogniti 98.2 3.6E-06 1.2E-10 91.5 11.3 92 150-251 182-280 (443)
223 3h2y_A GTPase family protein; 98.2 1.6E-06 5.3E-11 92.7 6.1 96 160-260 55-158 (368)
224 3ec1_A YQEH GTPase; atnos1, at 98.1 2.2E-06 7.6E-11 91.5 6.7 102 156-260 54-160 (369)
225 1j8m_F SRP54, signal recogniti 98.1 1E-05 3.5E-10 83.7 9.8 94 149-252 179-281 (297)
226 3kl4_A SRP54, signal recogniti 98.0 5.8E-06 2E-10 89.8 6.5 92 149-250 178-278 (433)
227 1f5n_A Interferon-induced guan 98.0 1.1E-05 3.8E-10 90.8 8.3 102 84-201 37-147 (592)
228 2xxa_A Signal recognition part 97.9 9.5E-06 3.3E-10 88.3 6.7 170 83-259 98-310 (433)
229 1puj_A YLQF, conserved hypothe 97.9 8.3E-06 2.8E-10 83.8 5.8 90 53-163 81-177 (282)
230 3cnl_A YLQF, putative uncharac 97.9 3.7E-06 1.3E-10 85.5 2.2 92 158-260 4-99 (262)
231 3cnl_A YLQF, putative uncharac 97.8 1.3E-05 4.4E-10 81.5 4.8 79 56-164 79-157 (262)
232 3e70_C DPA, signal recognition 97.6 0.00024 8.1E-09 74.5 10.4 92 150-251 211-309 (328)
233 4dzz_A Plasmid partitioning pr 97.4 0.00041 1.4E-08 66.6 9.0 81 149-233 74-159 (206)
234 3szr_A Interferon-induced GTP- 97.2 0.00063 2.2E-08 77.2 9.6 24 85-108 45-68 (608)
235 2yhs_A FTSY, cell division pro 97.2 0.00078 2.7E-08 73.9 8.7 157 84-251 292-479 (503)
236 1t9h_A YLOQ, probable GTPase E 97.1 0.00021 7.3E-09 74.0 3.8 83 170-255 82-170 (307)
237 1zu4_A FTSY; GTPase, signal re 97.1 0.0042 1.4E-07 64.7 12.9 81 149-234 190-283 (320)
238 2px0_A Flagellar biosynthesis 97.0 0.0011 3.6E-08 68.5 7.9 90 150-249 182-278 (296)
239 3end_A Light-independent proto 96.9 0.0038 1.3E-07 64.2 10.8 79 149-234 155-239 (307)
240 3cwq_A Para family chromosome 96.9 0.012 4.1E-07 57.0 13.3 82 149-233 66-150 (209)
241 1vma_A Cell division protein F 96.8 0.0021 7.1E-08 66.6 7.7 93 149-251 185-290 (306)
242 2rcn_A Probable GTPase ENGC; Y 96.7 0.0017 6E-08 68.5 6.8 87 170-256 126-213 (358)
243 2ffh_A Protein (FFH); SRP54, s 96.6 0.0022 7.6E-08 69.3 6.8 81 149-234 179-266 (425)
244 3q5d_A Atlastin-1; G protein, 96.4 0.0086 2.9E-07 65.1 9.9 26 83-108 65-90 (447)
245 1rj9_A FTSY, signal recognitio 96.4 0.0039 1.3E-07 64.5 6.7 91 151-251 185-288 (304)
246 1ls1_A Signal recognition part 96.0 0.005 1.7E-07 63.3 5.1 80 150-234 180-266 (295)
247 1bif_A 6-phosphofructo-2-kinas 95.9 0.0022 7.4E-08 70.5 1.6 106 86-210 40-156 (469)
248 2yv5_A YJEQ protein; hydrolase 95.6 0.025 8.4E-07 58.3 8.1 43 53-106 144-186 (302)
249 2rcn_A Probable GTPase ENGC; Y 95.3 0.013 4.3E-07 61.9 5.0 44 54-108 195-238 (358)
250 1nij_A Hypothetical protein YJ 95.1 0.065 2.2E-06 55.5 9.5 25 84-108 3-27 (318)
251 3la6_A Tyrosine-protein kinase 95.1 0.11 3.8E-06 53.0 11.0 67 150-217 201-268 (286)
252 1t9h_A YLOQ, probable GTPase E 95.0 0.0061 2.1E-07 63.0 1.4 22 86-107 174-195 (307)
253 3lh2_S 4E10_1VI7A_S0_002_N (T8 94.6 0.027 9.3E-07 45.4 3.9 62 451-515 9-70 (76)
254 1ye8_A Protein THEP1, hypothet 94.4 0.023 7.7E-07 53.8 3.5 23 87-109 2-24 (178)
255 1kgd_A CASK, peripheral plasma 94.2 0.024 8.1E-07 53.4 3.2 23 86-108 6-28 (180)
256 1lvg_A Guanylate kinase, GMP k 94.2 0.024 8.2E-07 54.4 3.2 23 86-108 5-27 (198)
257 3ney_A 55 kDa erythrocyte memb 93.9 0.035 1.2E-06 53.5 3.9 26 84-109 18-43 (197)
258 2wbm_A MTHSBDS, ribosome matur 93.9 0.13 4.5E-06 50.9 8.0 65 450-516 185-249 (252)
259 3zvl_A Bifunctional polynucleo 93.7 0.14 4.7E-06 55.1 8.5 24 84-107 257-280 (416)
260 3tr0_A Guanylate kinase, GMP k 93.6 0.035 1.2E-06 52.8 3.2 23 87-109 9-31 (205)
261 3a00_A Guanylate kinase, GMP k 93.6 0.036 1.2E-06 52.4 3.2 22 87-108 3-24 (186)
262 3kb2_A SPBC2 prophage-derived 93.5 0.043 1.5E-06 50.4 3.5 25 86-110 2-26 (173)
263 1znw_A Guanylate kinase, GMP k 93.4 0.04 1.4E-06 53.0 3.2 23 87-109 22-44 (207)
264 3c8u_A Fructokinase; YP_612366 93.3 0.072 2.5E-06 51.2 4.9 25 84-108 21-45 (208)
265 1t95_A Hypothetical protein AF 93.3 0.13 4.5E-06 50.6 6.7 66 450-517 170-235 (240)
266 3asz_A Uridine kinase; cytidin 93.2 0.052 1.8E-06 52.1 3.7 23 86-108 7-29 (211)
267 1zp6_A Hypothetical protein AT 93.2 0.055 1.9E-06 50.9 3.7 23 86-108 10-32 (191)
268 1z6g_A Guanylate kinase; struc 93.1 0.048 1.6E-06 53.1 3.2 24 86-109 24-47 (218)
269 3n70_A Transport activator; si 93.0 0.3 1E-05 43.9 8.3 22 86-107 25-46 (145)
270 1kag_A SKI, shikimate kinase I 92.9 0.056 1.9E-06 49.9 3.4 25 86-110 5-29 (173)
271 1s96_A Guanylate kinase, GMP k 92.9 0.051 1.7E-06 53.2 3.2 24 86-109 17-40 (219)
272 3bos_A Putative DNA replicatio 92.9 0.23 7.9E-06 47.8 8.0 23 85-107 52-74 (242)
273 3vaa_A Shikimate kinase, SK; s 92.9 0.061 2.1E-06 51.3 3.6 26 85-110 25-50 (199)
274 2j41_A Guanylate kinase; GMP, 92.9 0.063 2.2E-06 51.0 3.7 23 86-108 7-29 (207)
275 3tau_A Guanylate kinase, GMP k 92.8 0.055 1.9E-06 52.2 3.2 24 86-109 9-32 (208)
276 4eun_A Thermoresistant glucoki 92.6 0.07 2.4E-06 50.9 3.7 26 86-111 30-55 (200)
277 4gp7_A Metallophosphoesterase; 92.6 0.057 1.9E-06 50.4 2.9 20 87-106 11-30 (171)
278 2ph1_A Nucleotide-binding prot 92.5 0.23 8E-06 49.4 7.6 86 149-234 127-221 (262)
279 3e1y_E Eukaryotic peptide chai 92.4 0.26 8.7E-06 47.6 7.3 60 266-326 2-91 (204)
280 1knq_A Gluconate kinase; ALFA/ 92.3 0.099 3.4E-06 48.4 4.2 25 86-110 9-33 (175)
281 2if2_A Dephospho-COA kinase; a 92.3 0.076 2.6E-06 50.6 3.5 22 86-107 2-23 (204)
282 1htw_A HI0065; nucleotide-bind 92.3 0.073 2.5E-06 49.3 3.2 24 86-109 34-57 (158)
283 1ukz_A Uridylate kinase; trans 92.3 0.11 3.8E-06 49.3 4.7 30 81-110 11-40 (203)
284 1y63_A LMAJ004144AAA protein; 92.3 0.094 3.2E-06 49.3 4.1 25 84-108 9-33 (184)
285 1np6_A Molybdopterin-guanine d 92.3 0.078 2.7E-06 49.9 3.5 23 85-107 6-28 (174)
286 1u0l_A Probable GTPase ENGC; p 92.3 0.12 3.9E-06 53.1 5.0 45 53-108 148-192 (301)
287 3lw7_A Adenylate kinase relate 92.2 0.073 2.5E-06 48.7 3.1 23 86-109 2-24 (179)
288 4ido_A Atlastin-1; GTPase, GTP 92.1 0.47 1.6E-05 51.3 9.7 116 82-198 64-192 (457)
289 2qor_A Guanylate kinase; phosp 92.1 0.076 2.6E-06 50.8 3.2 24 86-109 13-36 (204)
290 1nks_A Adenylate kinase; therm 92.1 0.088 3E-06 49.2 3.5 23 86-108 2-24 (194)
291 1ex7_A Guanylate kinase; subst 92.0 0.081 2.8E-06 50.4 3.2 22 87-108 3-24 (186)
292 2f1r_A Molybdopterin-guanine d 92.0 0.047 1.6E-06 51.3 1.5 22 86-107 3-24 (171)
293 1xjc_A MOBB protein homolog; s 92.0 0.092 3.1E-06 49.3 3.5 23 85-107 4-26 (169)
294 3iij_A Coilin-interacting nucl 92.0 0.11 3.7E-06 48.5 4.0 25 85-109 11-35 (180)
295 3t61_A Gluconokinase; PSI-biol 91.9 0.089 3E-06 50.1 3.4 25 86-110 19-43 (202)
296 2bdt_A BH3686; alpha-beta prot 91.9 0.085 2.9E-06 49.6 3.2 21 87-107 4-24 (189)
297 1ly1_A Polynucleotide kinase; 91.9 0.095 3.3E-06 48.4 3.5 22 86-107 3-24 (181)
298 3tif_A Uncharacterized ABC tra 91.9 0.066 2.3E-06 52.9 2.5 21 87-107 33-53 (235)
299 3kjh_A CO dehydrogenase/acetyl 91.8 0.34 1.1E-05 47.2 7.7 77 149-232 130-207 (254)
300 1cke_A CK, MSSA, protein (cyti 91.6 0.1 3.4E-06 50.5 3.5 23 86-108 6-28 (227)
301 2pcj_A ABC transporter, lipopr 91.6 0.073 2.5E-06 52.2 2.4 21 87-107 32-52 (224)
302 3trf_A Shikimate kinase, SK; a 91.6 0.11 3.7E-06 48.6 3.5 25 86-110 6-30 (185)
303 1wcv_1 SOJ, segregation protei 91.6 0.39 1.3E-05 47.6 7.9 83 149-233 110-199 (257)
304 4fcw_A Chaperone protein CLPB; 91.5 0.57 1.9E-05 47.4 9.3 23 86-108 48-70 (311)
305 1qf9_A UMP/CMP kinase, protein 91.5 0.14 4.9E-06 47.7 4.3 25 86-110 7-31 (194)
306 2onk_A Molybdate/tungstate ABC 91.4 0.092 3.1E-06 52.1 3.0 23 86-108 25-47 (240)
307 3dl0_A Adenylate kinase; phosp 91.4 0.13 4.3E-06 49.5 3.9 23 87-109 2-24 (216)
308 3fb4_A Adenylate kinase; psych 91.4 0.12 4.1E-06 49.6 3.7 23 87-109 2-24 (216)
309 2bbw_A Adenylate kinase 4, AK4 91.4 0.1 3.5E-06 51.5 3.3 23 86-108 28-50 (246)
310 2jaq_A Deoxyguanosine kinase; 91.3 0.11 3.8E-06 49.0 3.4 24 87-110 2-25 (205)
311 2i3b_A HCR-ntpase, human cance 91.3 0.1 3.5E-06 49.7 3.1 22 87-108 3-24 (189)
312 1nn5_A Similar to deoxythymidy 91.3 0.12 4.3E-06 49.2 3.7 23 85-107 9-31 (215)
313 2cve_A Hypothetical protein TT 91.2 0.41 1.4E-05 45.6 7.1 67 446-515 124-190 (191)
314 2jeo_A Uridine-cytidine kinase 91.2 0.13 4.5E-06 50.8 3.9 25 86-110 26-50 (245)
315 1via_A Shikimate kinase; struc 91.2 0.11 3.9E-06 48.1 3.2 25 86-110 5-29 (175)
316 3b85_A Phosphate starvation-in 91.1 0.094 3.2E-06 50.8 2.7 22 87-108 24-45 (208)
317 3ec2_A DNA replication protein 91.1 0.099 3.4E-06 48.8 2.7 23 85-107 38-60 (180)
318 1qhx_A CPT, protein (chloramph 91.0 0.14 4.7E-06 47.4 3.7 24 86-109 4-27 (178)
319 3umf_A Adenylate kinase; rossm 91.0 0.17 5.7E-06 49.5 4.3 28 83-110 27-54 (217)
320 2cbz_A Multidrug resistance-as 91.0 0.092 3.1E-06 51.9 2.5 21 87-107 33-53 (237)
321 1jjv_A Dephospho-COA kinase; P 91.0 0.12 4.2E-06 49.2 3.3 22 86-107 3-24 (206)
322 3aez_A Pantothenate kinase; tr 91.0 0.11 3.8E-06 53.6 3.2 24 84-107 89-112 (312)
323 1b0u_A Histidine permease; ABC 90.9 0.092 3.1E-06 52.8 2.5 21 87-107 34-54 (262)
324 2d2e_A SUFC protein; ABC-ATPas 90.9 0.11 3.8E-06 51.8 3.0 21 87-107 31-51 (250)
325 1g3q_A MIND ATPase, cell divis 90.9 0.37 1.3E-05 46.7 6.8 82 149-234 110-192 (237)
326 2eyu_A Twitching motility prot 90.9 0.13 4.4E-06 51.7 3.5 23 86-108 26-48 (261)
327 1g6h_A High-affinity branched- 90.8 0.096 3.3E-06 52.4 2.5 21 87-107 35-55 (257)
328 3cm0_A Adenylate kinase; ATP-b 90.8 0.14 4.9E-06 47.7 3.6 24 86-109 5-28 (186)
329 3pfi_A Holliday junction ATP-d 90.8 0.94 3.2E-05 46.5 10.2 23 85-107 55-77 (338)
330 2qt1_A Nicotinamide riboside k 90.8 0.15 5.3E-06 48.6 3.9 23 86-108 22-44 (207)
331 3gfo_A Cobalt import ATP-bindi 90.8 0.097 3.3E-06 53.1 2.5 21 87-107 36-56 (275)
332 1hyq_A MIND, cell division inh 90.8 0.33 1.1E-05 48.0 6.4 81 150-234 110-191 (263)
333 2v9p_A Replication protein E1; 90.8 0.13 4.3E-06 53.0 3.4 23 86-108 127-149 (305)
334 2pze_A Cystic fibrosis transme 90.8 0.1 3.4E-06 51.4 2.5 21 87-107 36-56 (229)
335 1sgw_A Putative ABC transporte 90.7 0.1 3.5E-06 50.9 2.5 21 87-107 37-57 (214)
336 1kht_A Adenylate kinase; phosp 90.7 0.14 4.8E-06 47.7 3.4 23 86-108 4-26 (192)
337 4a74_A DNA repair and recombin 90.7 0.13 4.4E-06 49.6 3.2 21 87-107 27-47 (231)
338 1mv5_A LMRA, multidrug resista 90.7 0.1 3.5E-06 51.8 2.5 21 87-107 30-50 (243)
339 2ehv_A Hypothetical protein PH 90.7 0.12 4.2E-06 50.4 3.1 21 87-107 32-52 (251)
340 4g1u_C Hemin import ATP-bindin 90.7 0.095 3.3E-06 52.8 2.3 21 87-107 39-59 (266)
341 2ff7_A Alpha-hemolysin translo 90.7 0.1 3.5E-06 52.0 2.5 21 87-107 37-57 (247)
342 3lnc_A Guanylate kinase, GMP k 90.7 0.084 2.9E-06 51.5 1.9 23 86-108 28-51 (231)
343 2rhm_A Putative kinase; P-loop 90.6 0.18 6E-06 47.2 4.0 24 86-109 6-29 (193)
344 3uie_A Adenylyl-sulfate kinase 90.6 0.15 5.2E-06 48.5 3.6 23 86-108 26-48 (200)
345 1ji0_A ABC transporter; ATP bi 90.6 0.11 3.6E-06 51.6 2.5 21 87-107 34-54 (240)
346 3k9g_A PF-32 protein; ssgcid, 90.5 0.66 2.2E-05 46.0 8.4 76 149-228 143-221 (267)
347 1uf9_A TT1252 protein; P-loop, 90.5 0.17 5.7E-06 47.8 3.8 24 85-108 8-31 (203)
348 2zu0_C Probable ATP-dependent 90.4 0.13 4.4E-06 51.9 3.0 21 87-107 48-68 (267)
349 2ghi_A Transport protein; mult 90.4 0.11 3.8E-06 52.1 2.5 22 87-108 48-69 (260)
350 3jvv_A Twitching mobility prot 90.4 0.97 3.3E-05 47.4 9.9 22 87-108 125-146 (356)
351 2olj_A Amino acid ABC transpor 90.3 0.11 3.9E-06 52.2 2.5 21 87-107 52-72 (263)
352 1uj2_A Uridine-cytidine kinase 90.3 0.18 6.2E-06 49.9 3.9 28 83-110 20-47 (252)
353 2oze_A ORF delta'; para, walke 90.2 0.45 1.5E-05 48.1 7.0 83 149-233 153-242 (298)
354 2qi9_C Vitamin B12 import ATP- 90.2 0.12 4E-06 51.6 2.5 21 87-107 28-48 (249)
355 1tev_A UMP-CMP kinase; ploop, 90.2 0.17 6E-06 47.2 3.6 25 86-110 4-28 (196)
356 1vpl_A ABC transporter, ATP-bi 90.2 0.12 4.1E-06 51.8 2.5 21 87-107 43-63 (256)
357 2c95_A Adenylate kinase 1; tra 90.1 0.19 6.4E-06 47.2 3.8 25 86-110 10-34 (196)
358 2ixe_A Antigen peptide transpo 90.1 0.12 4.2E-06 52.2 2.5 21 87-107 47-67 (271)
359 1zd8_A GTP:AMP phosphotransfer 90.1 0.18 6.3E-06 48.9 3.7 25 86-110 8-32 (227)
360 2yz2_A Putative ABC transporte 89.9 0.13 4.4E-06 51.8 2.5 21 87-107 35-55 (266)
361 2plr_A DTMP kinase, probable t 89.9 0.18 6.3E-06 47.8 3.5 23 86-108 5-27 (213)
362 1rz3_A Hypothetical protein rb 89.9 0.23 7.8E-06 47.4 4.1 25 83-107 20-44 (201)
363 1zak_A Adenylate kinase; ATP:A 89.8 0.19 6.4E-06 48.6 3.5 24 86-109 6-29 (222)
364 2ihy_A ABC transporter, ATP-bi 89.8 0.13 4.5E-06 52.2 2.5 21 87-107 49-69 (279)
365 2nq2_C Hypothetical ABC transp 89.7 0.13 4.6E-06 51.3 2.4 21 87-107 33-53 (253)
366 1e6c_A Shikimate kinase; phosp 89.7 0.19 6.4E-06 46.2 3.3 25 86-110 3-27 (173)
367 2vli_A Antibiotic resistance p 89.7 0.15 5.2E-06 47.3 2.7 25 86-110 6-30 (183)
368 2pt5_A Shikimate kinase, SK; a 89.7 0.2 6.8E-06 45.8 3.5 23 87-109 2-24 (168)
369 3tlx_A Adenylate kinase 2; str 89.7 0.22 7.7E-06 49.1 4.0 25 85-109 29-53 (243)
370 1aky_A Adenylate kinase; ATP:A 89.6 0.2 7E-06 48.3 3.7 23 86-108 5-27 (220)
371 2iyv_A Shikimate kinase, SK; t 89.6 0.18 6.2E-06 47.0 3.2 25 86-110 3-27 (184)
372 1lw7_A Transcriptional regulat 89.6 0.15 5.2E-06 53.6 2.9 25 85-109 170-194 (365)
373 2bwj_A Adenylate kinase 5; pho 89.6 0.2 6.9E-06 47.1 3.5 25 86-110 13-37 (199)
374 1zuh_A Shikimate kinase; alpha 89.5 0.21 7.2E-06 45.8 3.5 26 85-110 7-32 (168)
375 2cdn_A Adenylate kinase; phosp 89.5 0.25 8.6E-06 46.9 4.1 25 86-110 21-45 (201)
376 1odf_A YGR205W, hypothetical 3 89.5 0.24 8E-06 50.6 4.1 25 83-107 29-53 (290)
377 2ze6_A Isopentenyl transferase 89.5 0.21 7.1E-06 49.8 3.6 25 86-110 2-26 (253)
378 1e4v_A Adenylate kinase; trans 89.5 0.21 7.1E-06 48.1 3.5 23 87-109 2-24 (214)
379 2v54_A DTMP kinase, thymidylat 89.4 0.21 7.1E-06 47.3 3.5 22 86-107 5-26 (204)
380 3tqc_A Pantothenate kinase; bi 89.4 0.24 8.2E-06 51.3 4.1 26 83-108 90-115 (321)
381 1vi7_A Hypothetical protein YI 89.4 0.5 1.7E-05 45.9 6.1 68 446-516 136-203 (217)
382 2pbr_A DTMP kinase, thymidylat 89.4 0.21 7.3E-06 46.6 3.4 21 87-107 2-22 (195)
383 2kjq_A DNAA-related protein; s 89.3 0.17 5.9E-06 46.1 2.7 22 86-107 37-58 (149)
384 3kta_A Chromosome segregation 89.2 0.2 7E-06 46.5 3.2 23 87-109 28-50 (182)
385 2kdo_A Ribosome maturation pro 89.2 0.13 4.4E-06 51.1 1.8 65 450-517 174-238 (252)
386 4e22_A Cytidylate kinase; P-lo 89.1 0.23 7.9E-06 49.3 3.6 23 86-108 28-50 (252)
387 2wwf_A Thymidilate kinase, put 89.0 0.27 9.1E-06 46.8 3.9 22 86-107 11-32 (212)
388 1sq5_A Pantothenate kinase; P- 89.0 0.25 8.6E-06 50.7 4.0 24 85-108 80-103 (308)
389 1gtv_A TMK, thymidylate kinase 88.9 0.12 4E-06 49.4 1.3 22 87-108 2-23 (214)
390 1gvn_B Zeta; postsegregational 88.9 0.26 8.8E-06 50.1 3.9 25 84-108 32-56 (287)
391 2z0h_A DTMP kinase, thymidylat 88.9 0.22 7.6E-06 46.7 3.2 22 87-108 2-23 (197)
392 1byi_A Dethiobiotin synthase; 88.9 1.9 6.5E-05 41.2 10.0 86 149-234 107-198 (224)
393 3tui_C Methionine import ATP-b 88.9 0.19 6.6E-06 53.0 3.0 66 383-473 291-358 (366)
394 2gza_A Type IV secretion syste 88.9 0.18 6.3E-06 53.0 2.9 23 86-108 176-198 (361)
395 2yvu_A Probable adenylyl-sulfa 88.8 0.26 8.7E-06 46.2 3.5 23 86-108 14-36 (186)
396 3fvq_A Fe(3+) IONS import ATP- 88.8 0.2 6.8E-06 52.8 3.0 22 87-108 32-53 (359)
397 2pjz_A Hypothetical protein ST 88.8 0.18 6.3E-06 50.6 2.7 22 87-108 32-53 (263)
398 1jbk_A CLPB protein; beta barr 88.8 0.25 8.5E-06 45.4 3.4 24 85-108 43-66 (195)
399 2b8t_A Thymidine kinase; deoxy 88.8 0.39 1.4E-05 47.0 5.0 42 176-217 89-130 (223)
400 3bfv_A CAPA1, CAPB2, membrane 88.7 0.62 2.1E-05 46.9 6.6 67 150-217 191-258 (271)
401 2bbs_A Cystic fibrosis transme 88.7 0.18 6E-06 51.6 2.5 22 86-107 65-86 (290)
402 3sr0_A Adenylate kinase; phosp 88.5 0.26 9E-06 47.6 3.5 24 87-110 2-25 (206)
403 3nh6_A ATP-binding cassette SU 88.4 0.14 4.6E-06 52.9 1.4 22 86-107 81-102 (306)
404 1z47_A CYSA, putative ABC-tran 88.3 0.22 7.6E-06 52.3 3.0 22 87-108 43-64 (355)
405 3a4m_A L-seryl-tRNA(SEC) kinas 88.3 0.28 9.7E-06 48.9 3.7 24 85-108 4-27 (260)
406 1ak2_A Adenylate kinase isoenz 88.2 0.3 1E-05 47.7 3.8 23 86-108 17-39 (233)
407 2yyz_A Sugar ABC transporter, 88.2 0.23 7.8E-06 52.3 3.0 22 87-108 31-52 (359)
408 2chg_A Replication factor C sm 88.2 0.99 3.4E-05 42.4 7.3 22 86-107 39-60 (226)
409 2pt7_A CAG-ALFA; ATPase, prote 88.1 0.19 6.4E-06 52.3 2.2 23 86-108 172-194 (330)
410 2ewv_A Twitching motility prot 88.0 0.26 8.9E-06 52.1 3.4 23 86-108 137-159 (372)
411 2it1_A 362AA long hypothetical 88.0 0.24 8.1E-06 52.3 3.0 22 87-108 31-52 (362)
412 2pez_A Bifunctional 3'-phospho 88.0 0.31 1.1E-05 45.2 3.5 23 86-108 6-28 (179)
413 1hqc_A RUVB; extended AAA-ATPa 87.9 1.3 4.5E-05 44.9 8.6 22 86-107 39-60 (324)
414 3b9q_A Chloroplast SRP recepto 87.9 0.37 1.3E-05 49.4 4.3 24 85-108 100-123 (302)
415 3rlf_A Maltose/maltodextrin im 87.9 0.24 8.3E-06 52.5 3.0 22 87-108 31-52 (381)
416 1g29_1 MALK, maltose transport 87.8 0.25 8.4E-06 52.3 3.0 22 87-108 31-52 (372)
417 1v43_A Sugar-binding transport 87.7 0.25 8.6E-06 52.3 3.0 22 87-108 39-60 (372)
418 2x8a_A Nuclear valosin-contain 87.7 0.3 1E-05 49.2 3.5 22 86-107 45-66 (274)
419 2p5t_B PEZT; postsegregational 87.7 0.26 9E-06 48.9 3.0 26 84-109 31-56 (253)
420 3be4_A Adenylate kinase; malar 87.7 0.31 1.1E-05 47.0 3.5 24 86-109 6-29 (217)
421 2xb4_A Adenylate kinase; ATP-b 87.7 0.31 1.1E-05 47.3 3.5 22 87-108 2-23 (223)
422 2w0m_A SSO2452; RECA, SSPF, un 87.6 0.3 1E-05 46.9 3.2 21 87-107 25-45 (235)
423 1vht_A Dephospho-COA kinase; s 87.5 0.36 1.2E-05 46.4 3.8 22 86-107 5-26 (218)
424 1f2t_A RAD50 ABC-ATPase; DNA d 87.5 0.32 1.1E-05 44.2 3.2 22 87-108 25-46 (149)
425 3nwj_A ATSK2; P loop, shikimat 87.2 0.32 1.1E-05 48.5 3.2 25 86-110 49-73 (250)
426 1ixz_A ATP-dependent metallopr 87.2 0.32 1.1E-05 48.0 3.2 22 86-107 50-71 (254)
427 2vp4_A Deoxynucleoside kinase; 87.0 0.21 7E-06 48.9 1.7 23 86-108 21-43 (230)
428 2f6r_A COA synthase, bifunctio 87.0 0.37 1.2E-05 48.8 3.6 24 84-107 74-97 (281)
429 2bjv_A PSP operon transcriptio 86.9 1.7 5.8E-05 42.9 8.5 23 86-108 30-52 (265)
430 2oap_1 GSPE-2, type II secreti 86.9 0.27 9.1E-06 54.4 2.7 22 86-107 261-282 (511)
431 3ea0_A ATPase, para family; al 86.8 1.1 3.8E-05 43.4 7.0 80 150-234 118-200 (245)
432 3gd7_A Fusion complex of cysti 86.7 0.31 1.1E-05 51.9 3.0 22 87-108 49-70 (390)
433 3d31_A Sulfate/molybdate ABC t 86.6 0.22 7.5E-06 52.2 1.7 22 87-108 28-49 (348)
434 1p9r_A General secretion pathw 86.5 0.34 1.2E-05 52.1 3.2 22 87-108 169-190 (418)
435 2p65_A Hypothetical protein PF 86.5 0.3 1E-05 44.8 2.5 24 85-108 43-66 (187)
436 2w58_A DNAI, primosome compone 86.4 0.42 1.4E-05 45.2 3.5 23 86-108 55-77 (202)
437 1sxj_A Activator 1 95 kDa subu 86.4 1.4 4.9E-05 48.4 8.3 25 85-109 77-101 (516)
438 2orw_A Thymidine kinase; TMTK, 86.3 2.4 8.1E-05 39.8 8.7 40 176-215 76-115 (184)
439 2og2_A Putative signal recogni 86.1 0.51 1.8E-05 49.6 4.3 24 85-108 157-180 (359)
440 3co5_A Putative two-component 86.1 1.5 5.1E-05 39.2 6.9 22 86-107 28-49 (143)
441 1lv7_A FTSH; alpha/beta domain 86.1 0.51 1.8E-05 46.5 4.1 23 85-107 45-67 (257)
442 2cvh_A DNA repair and recombin 86.0 0.41 1.4E-05 45.6 3.2 21 87-107 22-42 (220)
443 2grj_A Dephospho-COA kinase; T 86.0 0.47 1.6E-05 45.2 3.6 24 85-108 12-35 (192)
444 3r20_A Cytidylate kinase; stru 85.8 0.46 1.6E-05 46.8 3.5 25 86-110 10-34 (233)
445 1cr0_A DNA primase/helicase; R 85.8 0.4 1.4E-05 48.5 3.2 22 87-108 37-58 (296)
446 1iy2_A ATP-dependent metallopr 85.7 0.41 1.4E-05 48.0 3.2 22 86-107 74-95 (278)
447 1m7g_A Adenylylsulfate kinase; 85.6 0.49 1.7E-05 45.3 3.6 22 86-107 26-47 (211)
448 2npi_A Protein CLP1; CLP1-PCF1 85.6 0.39 1.3E-05 52.3 3.2 23 86-108 139-161 (460)
449 1oxx_K GLCV, glucose, ABC tran 85.6 0.22 7.4E-06 52.4 1.1 22 87-108 33-54 (353)
450 1in4_A RUVB, holliday junction 85.5 0.45 1.5E-05 49.3 3.5 23 86-108 52-74 (334)
451 1ojl_A Transcriptional regulat 85.5 2.3 7.8E-05 43.3 8.8 23 86-108 26-48 (304)
452 2obl_A ESCN; ATPase, hydrolase 85.5 0.44 1.5E-05 49.9 3.4 23 86-108 72-94 (347)
453 3d3q_A TRNA delta(2)-isopenten 85.5 0.55 1.9E-05 49.0 4.0 25 86-110 8-32 (340)
454 3cio_A ETK, tyrosine-protein k 85.4 1.5 5.2E-05 44.6 7.4 66 150-216 213-279 (299)
455 1n0w_A DNA repair protein RAD5 85.2 0.47 1.6E-05 46.0 3.2 21 87-107 26-46 (243)
456 3qf7_A RAD50; ABC-ATPase, ATPa 85.1 0.44 1.5E-05 50.2 3.2 22 87-108 25-46 (365)
457 3ake_A Cytidylate kinase; CMP 85.1 0.52 1.8E-05 44.5 3.5 24 87-110 4-27 (208)
458 3pvs_A Replication-associated 85.1 1.2 4.2E-05 48.1 6.8 24 85-108 50-73 (447)
459 1q3t_A Cytidylate kinase; nucl 84.9 0.58 2E-05 45.7 3.8 26 85-110 16-41 (236)
460 1ltq_A Polynucleotide kinase; 84.7 0.54 1.8E-05 47.5 3.5 22 86-107 3-24 (301)
461 4eaq_A DTMP kinase, thymidylat 84.6 0.68 2.3E-05 45.3 4.1 25 85-109 26-50 (229)
462 3euj_A Chromosome partition pr 84.3 0.5 1.7E-05 51.7 3.2 23 86-108 30-52 (483)
463 2ga8_A Hypothetical 39.9 kDa p 84.0 0.84 2.9E-05 47.9 4.7 27 82-108 21-47 (359)
464 3io3_A DEHA2D07832P; chaperone 84.0 8.5 0.00029 40.0 12.5 84 176-260 232-329 (348)
465 2dpy_A FLII, flagellum-specifi 83.9 0.56 1.9E-05 50.7 3.4 24 85-108 157-180 (438)
466 2qmh_A HPR kinase/phosphorylas 83.4 0.64 2.2E-05 44.8 3.1 23 86-108 35-57 (205)
467 3q9l_A Septum site-determining 83.3 0.98 3.4E-05 44.2 4.7 63 150-215 113-185 (260)
468 1svm_A Large T antigen; AAA+ f 83.1 0.66 2.2E-05 49.1 3.5 23 85-107 169-191 (377)
469 2qz4_A Paraplegin; AAA+, SPG7, 83.0 0.8 2.7E-05 44.9 3.9 24 84-107 38-61 (262)
470 1nlf_A Regulatory protein REPA 83.0 0.64 2.2E-05 46.6 3.2 22 86-107 31-52 (279)
471 1yqt_A RNAse L inhibitor; ATP- 82.8 0.61 2.1E-05 51.8 3.2 23 86-108 48-70 (538)
472 3b5x_A Lipid A export ATP-bind 82.7 0.58 2E-05 52.4 3.0 23 86-108 370-392 (582)
473 3b60_A Lipid A export ATP-bind 82.7 0.53 1.8E-05 52.8 2.7 22 86-107 370-391 (582)
474 3h4m_A Proteasome-activating n 82.6 0.77 2.6E-05 45.8 3.7 24 85-108 51-74 (285)
475 3crm_A TRNA delta(2)-isopenten 82.5 0.79 2.7E-05 47.4 3.7 24 86-109 6-29 (323)
476 1njg_A DNA polymerase III subu 82.4 0.76 2.6E-05 43.7 3.4 22 87-108 47-68 (250)
477 3tqf_A HPR(Ser) kinase; transf 82.3 0.76 2.6E-05 43.2 3.2 23 86-108 17-39 (181)
478 1a7j_A Phosphoribulokinase; tr 82.2 0.5 1.7E-05 48.1 2.1 22 86-107 6-27 (290)
479 1xx6_A Thymidine kinase; NESG, 82.0 4.5 0.00015 38.3 8.6 39 177-215 82-120 (191)
480 2xj4_A MIPZ; replication, cell 82.0 0.61 2.1E-05 47.0 2.6 78 150-229 103-205 (286)
481 3fgn_A Dethiobiotin synthetase 81.9 6.9 0.00024 38.7 10.3 66 149-214 125-197 (251)
482 3b9p_A CG5977-PA, isoform A; A 81.9 0.81 2.8E-05 46.0 3.5 24 85-108 54-77 (297)
483 1zcb_A G alpha I/13; GTP-bindi 81.9 0.79 2.7E-05 48.2 3.5 24 83-106 31-54 (362)
484 3qks_A DNA double-strand break 81.9 0.78 2.7E-05 43.9 3.2 23 87-109 25-47 (203)
485 3t15_A Ribulose bisphosphate c 81.8 1.3 4.5E-05 44.8 5.0 25 84-108 35-59 (293)
486 1p5z_B DCK, deoxycytidine kina 81.5 0.52 1.8E-05 46.9 1.9 24 84-107 23-46 (263)
487 2dr3_A UPF0273 protein PH0284; 81.5 0.8 2.7E-05 44.3 3.2 21 87-107 25-45 (247)
488 3ozx_A RNAse L inhibitor; ATP 81.3 0.61 2.1E-05 51.8 2.5 22 87-108 27-48 (538)
489 3cf0_A Transitional endoplasmi 81.3 0.89 3E-05 46.2 3.6 23 85-107 49-71 (301)
490 3syl_A Protein CBBX; photosynt 81.2 0.99 3.4E-05 45.5 3.9 24 85-108 67-90 (309)
491 3j16_B RLI1P; ribosome recycli 81.2 0.71 2.4E-05 52.1 3.0 22 87-108 105-126 (608)
492 1fnn_A CDC6P, cell division co 81.1 0.85 2.9E-05 47.5 3.5 23 86-108 45-67 (389)
493 3gmt_A Adenylate kinase; ssgci 81.1 0.93 3.2E-05 44.5 3.5 25 86-110 9-33 (230)
494 2yl4_A ATP-binding cassette SU 80.9 0.55 1.9E-05 52.8 2.0 22 86-107 371-392 (595)
495 3u61_B DNA polymerase accessor 80.9 4.2 0.00014 41.2 8.6 22 86-107 48-70 (324)
496 1r6b_X CLPA protein; AAA+, N-t 80.7 6.4 0.00022 45.3 11.0 25 85-109 488-512 (758)
497 1tue_A Replication protein E1; 80.7 0.73 2.5E-05 44.6 2.5 23 86-108 59-81 (212)
498 3qf4_B Uncharacterized ABC tra 80.6 0.59 2E-05 52.6 2.1 22 86-107 382-403 (598)
499 3e2i_A Thymidine kinase; Zn-bi 80.4 8.7 0.0003 37.2 10.0 44 176-219 101-144 (219)
500 1yqt_A RNAse L inhibitor; ATP- 80.0 0.88 3E-05 50.5 3.2 22 87-108 314-335 (538)
No 1
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=2.3e-150 Score=1271.45 Aligned_cols=562 Identities=55% Similarity=0.918 Sum_probs=467.6
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEe-cCCCeEEEEEeCC
Q 043429 81 PASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVF-ENEPFCLNLIDTP 159 (646)
Q Consensus 81 ~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~-~~~~~~l~liDTP 159 (646)
+.+++|||+|+||+|||||||+++|++.++.+..++..++++|+++.|+++|+|+..+...+.|.. ++..+.++|||||
T Consensus 2 ~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTP 81 (600)
T 2ywe_A 2 EQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTP 81 (600)
T ss_dssp CGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCC
T ss_pred CccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECC
Confidence 456789999999999999999999999988887777778999999999999999999999998875 4456999999999
Q ss_pred CCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCccccc
Q 043429 160 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAI 239 (646)
Q Consensus 160 G~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~ 239 (646)
||.+|..++.++++.||++|+|||+++|.++||...|..+...++|+++|+||+|+++++.+++.+++.+.++++..+++
T Consensus 82 Gh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi 161 (600)
T 2ywe_A 82 GHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAI 161 (600)
T ss_dssp CSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCE
T ss_pred CcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEE
Confidence 99999999999999999999999999999999999999999999999999999999998888888899998888777899
Q ss_pred ccccccccchhHHHHHHHHhCCCCCCCCCCCceEEEEEEEeecc-----------------ceEEecCCCceEEc-----
Q 043429 240 LCSAKEGIGINEILNAIVKRIPPPSNTAGCPFRALIFDRIIMLM-----------------KLECYPPIKCKWKN----- 297 (646)
Q Consensus 240 ~vSAk~g~GV~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~~d~~-----------------~~i~~~~~~~~~~v----- 297 (646)
++||++|.|+++++++|++.+|+|..+++.||+++|||++||+| +.|+++++++.+.|
T Consensus 162 ~vSAktg~GI~~Lle~I~~~lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~i~~ 241 (600)
T 2ywe_A 162 LASAKEGIGIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGA 241 (600)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCEEEETTTTEEEECCEEEE
T ss_pred EEEeecCCCchHHHHHHHHhcccccccccCCcceeEEEEeecccceEEEEEEEEeCEEecCCEEEeccccceEeeecccc
Confidence 99999999999999999999999999999999999999999998 77788887776654
Q ss_pred ------------cceeeEEEeecccccccccCCeeeecCccccCCCCCcccCCceEEeeeeeCCCCCHHHHHHHHHHHhh
Q 043429 298 ------------FKQVGYLSASIRSVADARVGDTITHFNRKADNLLPGYEEATPMVFCGLFPVDADQFPELRDALEKLQL 365 (646)
Q Consensus 298 ------------aG~Vg~i~~~i~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~ 365 (646)
|||||++++|++++.++++||||++.+++..+++|+++.++||++++++|.+++|+++|++||+||.+
T Consensus 242 ~~~~~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~ 321 (600)
T 2ywe_A 242 QTPKMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNPTKEPVPGFQPAKPMVYAGIYPAEDTTYEELRDALEKYAI 321 (600)
T ss_dssp ESSSEEEESCEETTCEEEEESSCCCTTSSCTTCEEEESSSCCSSCCSCCCCCCCCEEEEEEECTTCCHHHHHHHHHHHHT
T ss_pred cCCCceECCEEecCceeeeeccccchhhccCCCEEEeCCCccccccCCCCCCCcEEEEEeeccccccHHHHHHHHHHHhh
Confidence 99999999999999999999999998887656899999999999999999999999999999999999
Q ss_pred cCCceEEEeCCCccccceeEeccchhhHHHHHHHHHHHHcCceEEEecceeEEEEEee-CCeEEEEeCCCCCCCC-cccc
Q 043429 366 NDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVNCV-NGQTVECSNPSLLPEP-GQRR 443 (646)
Q Consensus 366 ~Dpsl~~~~e~~~~lg~g~r~gflG~lHlei~~erL~~e~~~~v~~t~P~V~Y~e~~~-~g~~~~~~~p~~~p~~-~~i~ 443 (646)
|||+|+|++|++++||+||||||||+|||||++|||+||||+++++++|+|+||||++ +|++++|+||++||.. +++.
T Consensus 322 eD~sl~~~~et~~~l~~g~~~~~~G~lHlei~~erl~re~~~~v~~~~P~V~yreti~~~g~~~~~~~p~~~p~~~~~~~ 401 (600)
T 2ywe_A 322 NDAAIVYEPESSPALGMGFRVGFLGLLHMEIVQERLEREYGVKIITTAPNVIYRVKKKFTDEVIEVRNPMDFPDNAGLIE 401 (600)
T ss_dssp TCSSCEEEEEEETTTEEEEEEEESSHHHHHHHHHHHHHHSCCCEEECCCEECEEEEETTCSSCEEESSGGGSCSCGGGEE
T ss_pred hCCEEEEEECCccccccceEEEeccHHHHHHHHHHHHhhcCceEEEEeeeEEEEEEecCCCcEEEEeChhhCCCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999 8999999999999999 8999
Q ss_pred cccccEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEccee
Q 043429 444 SIEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYK 523 (646)
Q Consensus 444 ~llEP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~ 523 (646)
.+||||++++|.+|+||+|+||++|++|||++.+|++.++++++|+|++|++|||+||+++|||+|+|||+|+|+|+||+
T Consensus 402 ~llEP~~~~~i~vP~e~~G~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~~f~~y~ 481 (600)
T 2ywe_A 402 YVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDPNTVYLEYEMPLSEIIVDFHDKIKSISRGFASYDYEFIGYR 481 (600)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEEEHHHHHHHHHHHHHHHHTTCCEEEEEEEEEE
T ss_pred cccCCeEEEEEEecHHHHHHHHHHHHHcCcEEeccEEcCCCEEEEEEEEcHHHHHhhHHHhhhhcCCCeEEEEEEeccce
Confidence 99999999999999999999999999999999999998778999999999999988999999999999999999999999
Q ss_pred eccceeeeeeccCCccCcceEEEehhhHHHHHHHHHHHHhccCCCCCceeeeEEeeCCeEEEeecccccchhhhhcccCC
Q 043429 524 ESQLIKLDILINGDCVEPLATIVHKDKAYAVGRALTQKLKELIPRQMFKVPIQACIGSKVIASEALSAIRKDVLAKCYGG 603 (646)
Q Consensus 524 ~~~~~k~~il~n~~~~~~l~~~~~~~~~~~~~~~~~~~lk~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~k~v~~~~~gg 603 (646)
++|++|++|++||++|||||+||||++|+.+||+||+|||++||||||||+|||+||+||||||||+|+|||||||||||
T Consensus 482 ~~~~~~~~~~~ng~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qa~~~~~~~a~~~~~~~~k~v~~k~~~~ 561 (600)
T 2ywe_A 482 PSDLIKLTVLINKKPVDALSFIVHADRAQKFARRVAEKLRETIPRQLFEVHIQVAKGGKVIASERIKPLRANVTAKCYGG 561 (600)
T ss_dssp ECCEEEEEEEESSSBCGGGCEEEEGGGHHHHHHHHHHHHHHHSCCCSSCEEEEEEETTEEEEEEEECCCC----------
T ss_pred EccccccccccCCCEeccchhhhhhHHHHHHHHHHHHHHHhhCCccccceeeehhhCCEEEEeeccchhhcchhhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHhHHhHHHHhhchhhhhccCceecCHHHHHHHHhcc
Q 043429 604 DISRKKKLLKKQAEGKKRMKAIGKVDVPQEAFMAVLKLE 642 (646)
Q Consensus 604 d~~rk~kll~~q~~gk~~~~~~~~~~~~~~~~~~~~~~~ 642 (646)
||||||||||||||||||||++|+|+||||||+++||.+
T Consensus 562 d~~r~~kll~~q~~gk~~~~~~~~v~~~~~~f~~~~~~~ 600 (600)
T 2ywe_A 562 DVTRKKKLLENQKEGKKRMKQFGKVQLPQEAFLSVLKVE 600 (600)
T ss_dssp ---------------------------------------
T ss_pred ChHHHHHHHHHHhhhhHhHhhcCCEecCHHHHHHHHccC
Confidence 999999999999999999999999999999999999863
No 2
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=1.3e-148 Score=1259.65 Aligned_cols=562 Identities=54% Similarity=0.922 Sum_probs=470.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEe-cCCCeEEEEEeCCCC
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVF-ENEPFCLNLIDTPGH 161 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~-~~~~~~l~liDTPG~ 161 (646)
+++|||+|+||+|||||||+++|++.++.+..+....+++|+++.|+++|+|+......+.|.. ++..+.++|||||||
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 4689999999999999999999999999888777788999999999999999999999998875 455699999999999
Q ss_pred ccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCccccccc
Q 043429 162 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILC 241 (646)
Q Consensus 162 ~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~~v 241 (646)
.+|..++.++++.||++|+|||+++|.+.||...|..+...++|+++|+||+|+++++.+++.+++.+.++++..+++++
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~v 161 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRC 161 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEEE
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999888888899999999887789999
Q ss_pred ccccccchhHHHHHHHHhCCCCCCCCCCCceEEEEEEEeecc-----------------ceEEecCCCceEEc-------
Q 043429 242 SAKEGIGINEILNAIVKRIPPPSNTAGCPFRALIFDRIIMLM-----------------KLECYPPIKCKWKN------- 297 (646)
Q Consensus 242 SAk~g~GV~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~~d~~-----------------~~i~~~~~~~~~~v------- 297 (646)
||++|.|+++|+++|.+.+|+|.++++.|++++|||+++|+| +++.++++++.+.|
T Consensus 162 SAktg~GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~i~~~~ 241 (599)
T 3cb4_D 162 SAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFT 241 (599)
T ss_dssp CTTTCTTHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEEEETTTCCEEECCEEEEES
T ss_pred ecccCCCchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCEEecCCEEEeccccceeEEeeeeecc
Confidence 999999999999999999999999999999999999999998 77888887776554
Q ss_pred ----------cceeeEEEeecccccccccCCeeeecCccccCCCCCcccCCceEEeeeeeCCCCCHHHHHHHHHHHhhcC
Q 043429 298 ----------FKQVGYLSASIRSVADARVGDTITHFNRKADNLLPGYEEATPMVFCGLFPVDADQFPELRDALEKLQLND 367 (646)
Q Consensus 298 ----------aG~Vg~i~~~i~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~D 367 (646)
+||||++++|++++.++++||||++.++++..++|+++.++|+++++++|.+..|+++|++||++|++||
T Consensus 242 ~~~~~~~~~~aGdi~~~~~gi~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD 321 (599)
T 3cb4_D 242 PKQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLND 321 (599)
T ss_dssp SSEEECSEECTTCEEEEECCCSSGGGSCTTCEEEESSSCCSSCCTTCCCCCCCEEEEEEESSGGGHHHHHHHHHHHHTTC
T ss_pred CCceECCEEcCCCeeEeeccccccccCccCCEeeecCCccccccccccCCCcceEEEEEecCccCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999888766689999999999999999999999999999999999999
Q ss_pred CceEEEeCCCccccceeEeccchhhHHHHHHHHHHHHcCceEEEecceeEEEEEeeCCeEEEEeCCCCCCCCcccccccc
Q 043429 368 AALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVNCVNGQTVECSNPSLLPEPGQRRSIEE 447 (646)
Q Consensus 368 psl~~~~e~~~~lg~g~r~gflG~lHlei~~erL~~e~~~~v~~t~P~V~Y~e~~~~g~~~~~~~p~~~p~~~~i~~llE 447 (646)
|+|.+++|++++|++||||||||+|||||++|||+||||+++++++|+|+||||+++|+.++|+||++||+.+++..+||
T Consensus 322 ~sl~~~~et~~~l~~gfr~g~lG~lhlei~~erl~~e~~~~~~~~~P~V~yreti~~g~~~~~~~p~~~p~~~~~~~llE 401 (599)
T 3cb4_D 322 ASLFYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTSREVIYVDSPSKLPAVNNIYELRE 401 (599)
T ss_dssp SSCEEEEEEETTTEEEEEEEESSHHHHHHHHHHHHHTSCCCEEECCCEECEEEEESSSCEEEESSGGGSCCGGGEEEEEE
T ss_pred cEEEEEeccccccccceEEEeccHHHHHHHHHHHHHHcCceEEEEeeeEEEEEEecCCceEEecChhhCCCccccchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeeccc
Q 043429 448 PFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKESQL 527 (646)
Q Consensus 448 P~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~~~ 527 (646)
||++++|.+|+||+|+||++|++|||++.+|++.+ ++++|+|++|++|||+||+++|||+|+|||+|+|+|+||+++|+
T Consensus 402 P~~~~~i~~P~e~~G~v~~~~~~rrG~~~~~~~~~-~~~~i~~~~P~~e~~~~~~~~l~s~T~G~~~~~~~~~~y~~~~~ 480 (599)
T 3cb4_D 402 PIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHG-NQVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQASDM 480 (599)
T ss_dssp EEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEECCT-TEEEEEEEEEHHHHHTTTHHHHHHHTTSCCEEEEEEEEEEECCE
T ss_pred cceEEEEEeCHHHHHHHHHHHHHcCcEEeCcEecC-CeEEEEEEecHHHHHHHHHHhhhhcCCcEEEEEEEecCceEecc
Confidence 99999999999999999999999999999999976 59999999999999889999999999999999999999999999
Q ss_pred eeeeeeccCCccCcceEEEehhhHHHHHHHHHHHHhccCCCCCceeeeEEeeCCeEEEeecccccchhhhhcccCCchhH
Q 043429 528 IKLDILINGDCVEPLATIVHKDKAYAVGRALTQKLKELIPRQMFKVPIQACIGSKVIASEALSAIRKDVLAKCYGGDISR 607 (646)
Q Consensus 528 ~k~~il~n~~~~~~l~~~~~~~~~~~~~~~~~~~lk~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~k~v~~~~~ggd~~r 607 (646)
+|++|++||++|||||+||||++|+++||+||+|||++||||||||+|||+||+||||||||+|+|||||||||||||||
T Consensus 481 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~k~v~~~~~~~d~~r 560 (599)
T 3cb4_D 481 VRVDVLINGERVDALALITHRDNSQNRGRELVEKMKDLIPRQQFDIAIQAAIGTHIIARSTVKQLRKNVLAKCYGGDISR 560 (599)
T ss_dssp EEEEEEETTEEEEEEEEEEEGGGHHHHHHHHHHHHHHHSCSCSSCEEEEEEETTEEEEEEEECCCCTTCCCCCCC-----
T ss_pred cccccccCCcEecccceeccHHHHHHHHHHHHHHHHhhCChhhccchhhhhhCCEEEEeeccchhhcchhhcccCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhHHHHhhchhhhhccCceecCHHHHHHHHhccccC
Q 043429 608 KKKLLKKQAEGKKRMKAIGKVDVPQEAFMAVLKLEKEV 645 (646)
Q Consensus 608 k~kll~~q~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (646)
||||||||||||||||++|+|+||||||+++||.+++.
T Consensus 561 ~~kl~~~q~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (599)
T 3cb4_D 561 KKKLLQKQKEGKKRMKQIGNVELPQEAFLAILHVGKDN 598 (599)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHhhhhHhHhhcCCEecCHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999987543
No 3
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=2.9e-77 Score=693.92 Aligned_cols=440 Identities=28% Similarity=0.422 Sum_probs=354.3
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccc---cccccccccccccccceeeeeeEEEEEEEecC---CCeEE
Q 043429 80 VPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE---MKEQFLDNMDLERERGITIKLQAARMRYVFEN---EPFCL 153 (646)
Q Consensus 80 ~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~---~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~---~~~~l 153 (646)
.|.++||||+|+||.|||||||+++|+..+|.+.+.+ .+.+++|+++.|++|||||++..+++.|+... +++.+
T Consensus 8 ~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~i 87 (709)
T 4fn5_A 8 TPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRV 87 (709)
T ss_dssp SCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEE
T ss_pred CchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEE
Confidence 4568899999999999999999999999998876543 45789999999999999999999999997432 47999
Q ss_pred EEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCC
Q 043429 154 NLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL 233 (646)
Q Consensus 154 ~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~ 233 (646)
||||||||.||..++.++++.||+||+|||+.+|++.||...|.++.+.++|.++|+||+|++.++.....+++.+.++.
T Consensus 88 NlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~~ 167 (709)
T 4fn5_A 88 NVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGH 167 (709)
T ss_dssp EEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHCS
T ss_pred EEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888877642
Q ss_pred Cc------------------------------------------------------------------------------
Q 043429 234 DC------------------------------------------------------------------------------ 235 (646)
Q Consensus 234 ~~------------------------------------------------------------------------------ 235 (646)
..
T Consensus 168 ~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~ 247 (709)
T 4fn5_A 168 TPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELS 247 (709)
T ss_dssp CEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCC
T ss_pred ceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCcc
Confidence 10
Q ss_pred -----------------ccccccccccccchhHHHHHHHHhCCCCC--------------------CCCCCCceEEEEEE
Q 043429 236 -----------------TNAILCSAKEGIGINEILNAIVKRIPPPS--------------------NTAGCPFRALIFDR 278 (646)
Q Consensus 236 -----------------~~i~~vSAk~g~GV~eLl~~I~~~ip~P~--------------------~~~~~pl~~~vf~~ 278 (646)
.|+++.||.++.|+..|++.|++++|+|. .++++||.++|||+
T Consensus 248 ~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~ 327 (709)
T 4fn5_A 248 EAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKI 327 (709)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEEC
T ss_pred HHHHHHHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCCcccccccccCCccccccccccCCccCcceEEEEEe
Confidence 14678899999999999999999999994 46788999999999
Q ss_pred Eeecc-------------------------------ceEEecCCCceEEc----cceeeEEEeecccccccccCCeeeec
Q 043429 279 IIMLM-------------------------------KLECYPPIKCKWKN----FKQVGYLSASIRSVADARVGDTITHF 323 (646)
Q Consensus 279 ~~d~~-------------------------------~~i~~~~~~~~~~v----aG~Vg~i~~~i~~~~~~~~GDtl~~~ 323 (646)
++|+| ++++.+.+.+..+| ||||+.+. +++++.+||||++.
T Consensus 328 ~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~----Gl~~~~~gdTl~~~ 403 (709)
T 4fn5_A 328 ATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAALI----GMKDVTTGDTLCSI 403 (709)
T ss_dssp CCBTTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCCCEESEECTTCEEEEC----SCSSCCTTCEEECS
T ss_pred ecccCCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeecceeeEeeeecCCCeeeec----CCCcCccCCEecCC
Confidence 99998 34444554444444 99998664 45789999999987
Q ss_pred CccccCCCCCcccCCceEEeeeeeCCCCCHHHHHHHHHHHhhcCCceEEE--eCCCccccceeEeccchhhHHHHHHHHH
Q 043429 324 NRKADNLLPGYEEATPMVFCGLFPVDADQFPELRDALEKLQLNDAALKFE--PETSSAMGFGFRCGFLGLLHMEIVQERL 401 (646)
Q Consensus 324 ~~~~~~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~~~--~e~~~~lg~g~r~gflG~lHlei~~erL 401 (646)
+.+. +++++..++|+++++++|.++.|+++|.++|+||.++||+|+++ +|+++.+..| +|+|||||+++||
T Consensus 404 ~~~~--~~~~~~~~~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v~~~eetge~vi~g-----~GELHLei~l~rL 476 (709)
T 4fn5_A 404 EKPI--ILERMDFPEPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISG-----MGELHLDIIVDRM 476 (709)
T ss_dssp SSCC--BCC----CCCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEEEEETTTTEEEEEE-----SCHHHHHHHHHHH
T ss_pred Cccc--cCCCCCCCCcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEEEEecCCCcEEEEE-----ECHHHHHHHHHHH
Confidence 7665 47888889999999999999999999999999999999999997 5677765555 8999999999999
Q ss_pred HHHcCceEEEecceeEEEEEeeCCe--------------------EEEEeC------------------------C----
Q 043429 402 EREYNLSLITTAPSVVYRVNCVNGQ--------------------TVECSN------------------------P---- 433 (646)
Q Consensus 402 ~~e~~~~v~~t~P~V~Y~e~~~~g~--------------------~~~~~~------------------------p---- 433 (646)
++|||+++.+++|.|+||||+++.. ++.++. |
T Consensus 477 r~e~gvev~vs~P~V~yrETi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~e~g~~~~~~~f~~~~~~~~~p~~~~ 556 (709)
T 4fn5_A 477 KREFGVEANIGKPQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDEKGNITEGLVFENEVVGGVVPKEYI 556 (709)
T ss_dssp HTTTCCCBCCBCCCCCCEEECCCCSEEEEEEEEEEETTEEEEEEEEEEEECCCBC-CCCBCCEEEEEECC-CCSSCGGGH
T ss_pred HHHhCceEEEeeceEEEEEEEecCCceecceeeeccCCcCcceeEEEEEeeccccccCCCcCceEEecccccccCCHHHH
Confidence 9999999999999999999996520 111210 0
Q ss_pred ----------------CCCCCCc----------------cc------------------ccccccEEEEEEEcccccHHH
Q 043429 434 ----------------SLLPEPG----------------QR------------------RSIEEPFVKIELLTPKEYIGS 463 (646)
Q Consensus 434 ----------------~~~p~~~----------------~i------------------~~llEP~~~~~I~~P~e~~g~ 463 (646)
.++|..+ .. .+||||||.++|.+|++|+|+
T Consensus 557 ~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~G~ 636 (709)
T 4fn5_A 557 PAIQKGIEEQMKNGVVAGYPLIGLKATVFDGSYHDVDSNEMAFKIAASMATKQLAQKGGGKVLEPIMKVEVVTPEDYMGD 636 (709)
T ss_dssp HHHHHHHHHHHHHCSSSSCCBSEEEEEEEECCCCTTTBCHHHHHHHHHHHHHTHHHHSCCEEEEEEEEEEEEEETTTHHH
T ss_pred HHHHHHHHHHHhcCcccCCceeeeEEEEEEccccCCCCChHHHHHHHHHHHHHHHHHCCCEEECceEEEEEEECHHHHHH
Confidence 1223210 00 168999999999999999999
Q ss_pred HHHHHhhcCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeec--cceeeee
Q 043429 464 LMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKES--QLIKLDI 532 (646)
Q Consensus 464 v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~--~~~k~~i 532 (646)
||++|++|||++.+++..+ +..+|+|++|++|+ +||.++|||+|+|+|+|+|+|+||++. ++.+-.|
T Consensus 637 V~~~L~~RRG~i~~~~~~~-~~~~i~a~vPv~E~-~gf~~~LRs~T~G~a~~~~~F~~y~~vp~~~~~~~i 705 (709)
T 4fn5_A 637 VMGDLNRRRGLIQGMEDTV-SGKVIRAEVPLGEM-FGYATDVRSMSQGRASYSMEFSKYAEAPSNIVEALV 705 (709)
T ss_dssp HHHHHGGGTCEEEEEEECS-SEEEEEEEEESGGG-TTHHHHHHHHTTTCCEEECCEEEEEECCHHHHHHHH
T ss_pred HHHHHHhcCCEEeceEecC-CCEEEEEEecHHHh-hCHHHHHHhhCCCeEEEEEEECCcccCCcCHHHHHH
Confidence 9999999999999998865 66689999999999 899999999999999999999999974 5444333
No 4
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=3.9e-78 Score=692.66 Aligned_cols=451 Identities=23% Similarity=0.310 Sum_probs=377.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccc---cccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCC
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE---MKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPG 160 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~---~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG 160 (646)
+||||+|+||+|||||||+++|+..+|.+.+.+ .+++++|+++.|++|||||++...++.|+ ++.+|||||||
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~----~~~iNlIDTPG 76 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWE----NTKVNIIDTPG 76 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCS----SCBCCCEECCC
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEEC----CEEEEEEECCC
Confidence 589999999999999999999999999998764 36789999999999999999999999887 89999999999
Q ss_pred CccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCC------
Q 043429 161 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLD------ 234 (646)
Q Consensus 161 ~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~------ 234 (646)
|.||..++.++++.||+||+||||.+|++.||...|.++.+.++|.++|+||+|++.+++..+.+++++.++..
T Consensus 77 H~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~ 156 (638)
T 3j25_A 77 HMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQK 156 (638)
T ss_dssp SSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCC
T ss_pred cHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccce
Confidence 99999999999999999999999999999999999999999999999999999999999988888887766421
Q ss_pred -------------------------------------------------------cccccccccccccchhHHHHHHHHh
Q 043429 235 -------------------------------------------------------CTNAILCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 235 -------------------------------------------------------~~~i~~vSAk~g~GV~eLl~~I~~~ 259 (646)
..|+++.||++|.||+.|++.|++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~ 236 (638)
T 3j25_A 157 VELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNK 236 (638)
T ss_dssp CCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHS
T ss_pred eEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcc
Confidence 1268899999999999999999999
Q ss_pred CCCCCCCCCCCceEEEEEEEeecc-----------------ceEE-------------ecCCCceEEc----cceeeEEE
Q 043429 260 IPPPSNTAGCPFRALIFDRIIMLM-----------------KLEC-------------YPPIKCKWKN----FKQVGYLS 305 (646)
Q Consensus 260 ip~P~~~~~~pl~~~vf~~~~d~~-----------------~~i~-------------~~~~~~~~~v----aG~Vg~i~ 305 (646)
+|+|..+.+.||.|+|||+++|+| ++++ .+.+++..+| ||||+.+.
T Consensus 237 ~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~ 316 (638)
T 3j25_A 237 FYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKEKIKVTEMYTSINGELCKIDRAYSGEIVILQ 316 (638)
T ss_dssp CCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCCCCSSBCCCCSSCCCCBSCCCTTBCCCCSCCC
T ss_pred ccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccCcceeEEeeecccccccccccccccceEEEEe
Confidence 999999999999999999999998 2222 2222333333 99987553
Q ss_pred eecccccccccCCeeeecCccccCCCCCcccCCceEEeeeeeCCCCCHHHHHHHHHHHhhcCCceEEEeCCCccccceeE
Q 043429 306 ASIRSVADARVGDTITHFNRKADNLLPGYEEATPMVFCGLFPVDADQFPELRDALEKLQLNDAALKFEPETSSAMGFGFR 385 (646)
Q Consensus 306 ~~i~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~~~~e~~~~lg~g~r 385 (646)
+ .++++|||+++...+. .++++..|+|+++++++|.++.|+++|.++|++|++|||+++++.+.+. .++.
T Consensus 317 ----g-~~~~~~~tl~d~~~~~--~~~~i~~p~Pv~~~aiep~~~~d~~kL~~aL~kL~~eDPsl~v~~~~et---~e~i 386 (638)
T 3j25_A 317 ----N-EFLKLNSVLGDTKLLP--QRKKIENPHPLLQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTT---HEII 386 (638)
T ss_dssp ----S-SSCSSEECSSSSSSGG--GCSCCCCCCCCCCCEEECCSHHHHHHHHHHHHHHHHTCTTCCCCCCSSS---SCCC
T ss_pred ----c-cccccCceecCCCCcc--cccCccCCCccceeeeccCChHHHHHHHHHHHHHhhcCCeeEEEecCCC---ceEE
Confidence 2 4678899988765543 3677888999999999999999999999999999999999999743322 2466
Q ss_pred eccchhhHHHHHHHHHHHHcCceEEEecceeEEEEEeeCCe-----------------EEEEeC----------------
Q 043429 386 CGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVNCVNGQ-----------------TVECSN---------------- 432 (646)
Q Consensus 386 ~gflG~lHlei~~erL~~e~~~~v~~t~P~V~Y~e~~~~g~-----------------~~~~~~---------------- 432 (646)
|++||+|||||+++||++|||+++.+++|+|+||||+++.. .+.+++
T Consensus 387 l~g~GeLHLei~~~rL~~efgvev~~~~P~V~yrEti~~~~~~~~~~~~~~~~~~~~v~~~~eP~~~~~g~~f~~~~~~~ 466 (638)
T 3j25_A 387 LSFLGKVQMEVISALLQEKYHVEIELKEPTVIYMERPLKNAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYESSVSLG 466 (638)
T ss_dssp CCCSSHHHHHHHHHHHTTTTCCCCEEECCCCCCCBCCCSCCEECCCCCSSSCCCCCCCCEECCCCCSSCCCCCCCCCCSS
T ss_pred EccccHHHHHHHHHHHHHHhCCcEEEeCCceeEEEEecccceEEEEEecCCCCceEEEEEEEecccCCCCcEEEeeeecc
Confidence 77799999999999999999999999999999999986521 122211
Q ss_pred ---------------------CCCCCCC----------------ccc------------------ccccccEEEEEEEcc
Q 043429 433 ---------------------PSLLPEP----------------GQR------------------RSIEEPFVKIELLTP 457 (646)
Q Consensus 433 ---------------------p~~~p~~----------------~~i------------------~~llEP~~~~~I~~P 457 (646)
+.++|.. ++. ..||||||.++|.+|
T Consensus 467 ~~~~~~~~av~~g~~~~~~~Gl~g~pv~~v~v~l~dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p~LLEPi~~veI~vP 546 (638)
T 3j25_A 467 YLNQSFQNAVMEGIRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFKIYAP 546 (638)
T ss_dssp STTHHHHHHHHHHHHHHHHSSSSCCCCCSCCCCCCCCCCSSCSCCSHHHHHHHHHHHHHHHHHHCCBCCCCCTTCEEEEE
T ss_pred cchhhhhhHHhhhHHHHHhccccCCcccceEEEEEECcccCCCCCHHHHHHHHHHHHHHHHHHCCCEEEcCcEEEEEEEC
Confidence 1122321 000 278999999999999
Q ss_pred cccHHHHHHHHhhcCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeeccceeeeeeccCC
Q 043429 458 KEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKESQLIKLDILINGD 537 (646)
Q Consensus 458 ~e~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~~~~k~~il~n~~ 537 (646)
++|+|+||++|++|||++.+++.. +++.+|+|++|++|| +||.++|||+|+|+|+|+|+|+||++. .|+
T Consensus 547 ~~~~G~V~~~L~~RRG~i~~~~~~-~~~~~i~a~vP~~e~-~gy~~~Lrs~T~G~a~~~~~f~~y~~v---------pgd 615 (638)
T 3j25_A 547 QEYLSRAYNDAPKYCANIVDTQLK-NNEVILSGEIPARCI-QEYRSDLTFFTNGRSVCLTELKGYHVT---------TGE 615 (638)
T ss_dssp TTTHHHHHHHHHHTTCCCCCCCCC-TTEEEEECCCSSCCH-HHHHHHHHHTTTTCCEEECCCCCCCCC---------CSC
T ss_pred HHHHHHHHHHHHhCCcEEeCeEec-CCeEEEEEEECHHHh-hCHHHHHHhhCCCcEEEEEEECceEEC---------CCC
Confidence 999999999999999999999874 588999999999999 899999999999999999999999984 344
Q ss_pred ccCcceEEEehhhHHHHHHHHHHHH
Q 043429 538 CVEPLATIVHKDKAYAVGRALTQKL 562 (646)
Q Consensus 538 ~~~~l~~~~~~~~~~~~~~~~~~~l 562 (646)
|++.-.. -..-..+.|.+..||
T Consensus 616 p~~~~~~---~~~~~d~~~~~~~k~ 637 (638)
T 3j25_A 616 PVCQPRR---PNSRIDKVRYMFNKI 637 (638)
T ss_dssp CSCCCCC---CCCCHHHHHHHHHHH
T ss_pred ccccccC---CCChhhHHHHHHhcc
Confidence 4432111 112234567777765
No 5
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=8.6e-73 Score=654.11 Aligned_cols=433 Identities=29% Similarity=0.410 Sum_probs=371.5
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccc---cccccccccccccccceeeeeeEEEEEEEe---cCCCeEEE
Q 043429 81 PASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE---MKEQFLDNMDLERERGITIKLQAARMRYVF---ENEPFCLN 154 (646)
Q Consensus 81 ~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~---~~~~~~d~~~~e~e~giTi~~~~~~~~~~~---~~~~~~l~ 154 (646)
+.++++||+|+||+|||||||+++|+..++.+...+ .+.+++|+++.|+++|+|+......+.|.. ++..+.++
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 456789999999999999999999999877765542 246789999999999999999988888762 23459999
Q ss_pred EEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCC
Q 043429 155 LIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLD 234 (646)
Q Consensus 155 liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~ 234 (646)
|||||||.+|..++.++++.+|++|+|||++++.+.++...|..+...++|+++|+||+|+..++..++.+++++.++..
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~~~ 165 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGAN 165 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999888777777777664421
Q ss_pred --------------------------------------------------------------------------------
Q 043429 235 -------------------------------------------------------------------------------- 234 (646)
Q Consensus 235 -------------------------------------------------------------------------------- 234 (646)
T Consensus 166 ~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~~ 245 (704)
T 2rdo_7 166 PVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTE 245 (704)
T ss_pred ceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCH
Confidence
Q ss_pred ---------------cccccccccccccchhHHHHHHHHhCCCCCC--------------------CCCCCceEEEEEEE
Q 043429 235 ---------------CTNAILCSAKEGIGINEILNAIVKRIPPPSN--------------------TAGCPFRALIFDRI 279 (646)
Q Consensus 235 ---------------~~~i~~vSAk~g~GV~eLl~~I~~~ip~P~~--------------------~~~~pl~~~vf~~~ 279 (646)
..|++++||++|.|++.|++.|++++|+|.. +++.||.|+|||++
T Consensus 246 ~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~ 325 (704)
T 2rdo_7 246 AEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIA 325 (704)
T ss_pred HHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCCceEEEEEEEE
Confidence 0258899999999999999999999999854 25789999999999
Q ss_pred eecc-----------------ceEEecCCCce--------------EEc----cceeeEEEeecccccccccCCeeeecC
Q 043429 280 IMLM-----------------KLECYPPIKCK--------------WKN----FKQVGYLSASIRSVADARVGDTITHFN 324 (646)
Q Consensus 280 ~d~~-----------------~~i~~~~~~~~--------------~~v----aG~Vg~i~~~i~~~~~~~~GDtl~~~~ 324 (646)
+|+| ++|+....++. .+| ||||+.+. | ++++++||||++.+
T Consensus 326 ~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~-g---l~~~~~GdTl~~~~ 401 (704)
T 2rdo_7 326 TDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAI-G---LKDVTTGDTLCDPD 401 (704)
T ss_pred EcCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEcceeCCCCEEEEe-C---cccCccCCEEeCCC
Confidence 9998 44444443333 333 99998876 4 56789999999876
Q ss_pred ccccCCCCCcccCCceEEeeeeeCCCCCHHHHHHHHHHHhhcCCceEEE--eCCCccccceeEeccchhhHHHHHHHHHH
Q 043429 325 RKADNLLPGYEEATPMVFCGLFPVDADQFPELRDALEKLQLNDAALKFE--PETSSAMGFGFRCGFLGLLHMEIVQERLE 402 (646)
Q Consensus 325 ~~~~~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~~~--~e~~~~lg~g~r~gflG~lHlei~~erL~ 402 (646)
++. ++++++.+.|+++++|+|.++.|+++|.+||+||++|||+|+++ +|++++++.| ||+|||||+++||+
T Consensus 402 ~~~--~l~~~~~~~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~etge~il~g-----~GelhLei~~~rL~ 474 (704)
T 2rdo_7 402 API--ILERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAG-----MGELHLDIIVDRMK 474 (704)
T ss_pred ccc--ccCCCCCCCceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEEcCCCCcEEEEe-----CCHHHHHHHHHHHH
Confidence 554 48889999999999999999999999999999999999999998 6899999999 99999999999999
Q ss_pred HHcCceEEEecceeEEEEEeeCCe--------------------EEEEeC----CC------------------------
Q 043429 403 REYNLSLITTAPSVVYRVNCVNGQ--------------------TVECSN----PS------------------------ 434 (646)
Q Consensus 403 ~e~~~~v~~t~P~V~Y~e~~~~g~--------------------~~~~~~----p~------------------------ 434 (646)
+|||+++.+++|+|+||||+++.. ++.+++ |.
T Consensus 475 ~~f~v~v~~~~p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ePl~~~~~g~g~~f~~~~~g~~~p~~~~~~v~ 554 (704)
T 2rdo_7 475 REFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGVIPGEYIPAVD 554 (704)
T ss_pred HHhCceEEEeCCEEEEEEeeccccccceeeeccccCCCCeeEEEEEEEEECCCCCCCCCcEEEEeccCCcCcHHHHHHHH
Confidence 999999999999999999996321 233332 11
Q ss_pred -------------CCCCC----------------ccc------------------ccccccEEEEEEEcccccHHHHHHH
Q 043429 435 -------------LLPEP----------------GQR------------------RSIEEPFVKIELLTPKEYIGSLMEL 467 (646)
Q Consensus 435 -------------~~p~~----------------~~i------------------~~llEP~~~~~I~~P~e~~g~v~~~ 467 (646)
++|.. ++. .+||||||.++|.+|++|+|+||++
T Consensus 555 ~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~ 634 (704)
T 2rdo_7 555 KGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGD 634 (704)
T ss_pred HHHHHHHhcCCcCCCceeeEEEEEEeccccCCCCcHHHHHHHHHHHHHHHHHhcCCeeeeeEEEEEEEeCHHHHhHHHHH
Confidence 12210 000 2899999999999999999999999
Q ss_pred HhhcCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeecc
Q 043429 468 AQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKESQ 526 (646)
Q Consensus 468 ~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~~ 526 (646)
|++|||++.++++.+ +++.|+|++|++|| +||.++|||+|+|+|+|+|+|+||++.+
T Consensus 635 l~~rrG~i~~~~~~~-~~~~i~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~~~ 691 (704)
T 2rdo_7 635 LSRRRGMLKGQESEV-TGVKIHAEVPLSEM-FGYATQLRSLTKGRASYTMEFLKYDEAP 691 (704)
T ss_pred HHhCCceEeCceecC-CeEEEEEEecHHHH-hhHHHHhHhhcCCceEEEEEeCcceECC
Confidence 999999999999865 78999999999999 8999999999999999999999999854
No 6
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=8.9e-73 Score=653.41 Aligned_cols=430 Identities=28% Similarity=0.407 Sum_probs=354.5
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccc---cccccccccccccccceeeeeeEEEEEEEecCCCeEEEEE
Q 043429 80 VPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE---MKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLI 156 (646)
Q Consensus 80 ~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~---~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~li 156 (646)
++.++++||+|+||+|||||||+++|+..++.+.+.+ .+.+++|+.+.|+++|+|+......+.|. ++.++||
T Consensus 5 ~~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~----~~~i~li 80 (693)
T 2xex_A 5 FSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE----GHRVNII 80 (693)
T ss_dssp SCSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET----TEEEEEE
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC----CeeEEEE
Confidence 4567889999999999999999999998777664432 24578899999999999999998888776 7999999
Q ss_pred eCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCC--
Q 043429 157 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLD-- 234 (646)
Q Consensus 157 DTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~-- 234 (646)
|||||.+|..++.++++.+|++|+|+|++++.+.++...|..+...++|+++|+||+|+..++..+..+++++.++..
T Consensus 81 DTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~~~ 160 (693)
T 2xex_A 81 DTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAA 160 (693)
T ss_dssp CCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCCEE
T ss_pred ECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCCCce
Confidence 999999999999999999999999999999999999999999999999999999999999888777777777765431
Q ss_pred ----------------------------c---------------------------------------------------
Q 043429 235 ----------------------------C--------------------------------------------------- 235 (646)
Q Consensus 235 ----------------------------~--------------------------------------------------- 235 (646)
.
T Consensus 161 ~~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~ 240 (693)
T 2xex_A 161 PIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSEL 240 (693)
T ss_dssp ESEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHH
T ss_pred eEEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHH
Confidence 0
Q ss_pred -------------ccccccccccccchhHHHHHHHHhCCCCCC--------------------CCCCCceEEEEEEEeec
Q 043429 236 -------------TNAILCSAKEGIGINEILNAIVKRIPPPSN--------------------TAGCPFRALIFDRIIML 282 (646)
Q Consensus 236 -------------~~i~~vSAk~g~GV~eLl~~I~~~ip~P~~--------------------~~~~pl~~~vf~~~~d~ 282 (646)
.|++++||.+|.|++.|++.|++++|+|.. +++.||.|+|||+++|+
T Consensus 241 ~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~ 320 (693)
T 2xex_A 241 KEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDP 320 (693)
T ss_dssp HHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEEEEET
T ss_pred HHHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEEeeecC
Confidence 258899999999999999999999999964 36789999999999999
Q ss_pred c-----------------ceEE--------------ecCCCceEEc----cceeeEEEeecccccccccCCeeeecCccc
Q 043429 283 M-----------------KLEC--------------YPPIKCKWKN----FKQVGYLSASIRSVADARVGDTITHFNRKA 327 (646)
Q Consensus 283 ~-----------------~~i~--------------~~~~~~~~~v----aG~Vg~i~~~i~~~~~~~~GDtl~~~~~~~ 327 (646)
| ++|+ .+.+++..+| ||||+++. | ++++++||||++.+++.
T Consensus 321 ~~g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~-g---l~~~~~GdTl~~~~~~~ 396 (693)
T 2xex_A 321 YVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAV-G---LKDTGTGDTLCGEKNDI 396 (693)
T ss_dssp TTEEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCEEEEE-S---CSSCCTTCEEEETTCCE
T ss_pred CCceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEccccCcCCEEEEe-C---cccCccCCEEecCCCcc
Confidence 8 3343 4444444444 99999876 4 56789999999877654
Q ss_pred cCCCCCcccCCceEEeeeeeCCCCCHHHHHHHHHHHhhcCCceEEE--eCCCccccceeEeccchhhHHHHHHHHHHHHc
Q 043429 328 DNLLPGYEEATPMVFCGLFPVDADQFPELRDALEKLQLNDAALKFE--PETSSAMGFGFRCGFLGLLHMEIVQERLEREY 405 (646)
Q Consensus 328 ~~~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~~~--~e~~~~lg~g~r~gflG~lHlei~~erL~~e~ 405 (646)
++++++.++|+++++|+|.++.|+++|.+||++|++|||+|+++ +|++++++.| ||+|||||+++||++||
T Consensus 397 --~~~~~~~~~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~et~e~il~g-----~Gelhlei~~~rL~~~~ 469 (693)
T 2xex_A 397 --ILESMEFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGG-----MGELHLDILVDRMKKEF 469 (693)
T ss_dssp --ECCCCSSCSCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC---CCCEEEEE-----SSHHHHHHHHHHHHHHS
T ss_pred --ccCCcCCCCceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEe-----CCHHHHHHHHHHHHHHh
Confidence 48899999999999999999999999999999999999999998 7899999999 99999999999999999
Q ss_pred CceEEEecceeEEEEEeeCC---------------e----EEEEeC------------------C---------------
Q 043429 406 NLSLITTAPSVVYRVNCVNG---------------Q----TVECSN------------------P--------------- 433 (646)
Q Consensus 406 ~~~v~~t~P~V~Y~e~~~~g---------------~----~~~~~~------------------p--------------- 433 (646)
|+++.+++|+|+||||+++. + ++.+++ |
T Consensus 470 ~v~v~~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~ 549 (693)
T 2xex_A 470 NVECNVGAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPREYIPSVEAGLKDAM 549 (693)
T ss_dssp CCCEEECCCEECCEEEESSCEEEEEEEEECTTSSCEEEEEEEEEEECCTTCCCEEEECCCTTSSCGGGHHHHHHHHHHHH
T ss_pred CceEEEeCCeEEEEEEeccccceeEeeccccCCCCceEEEEEEEEECCCCCCCEEEecCCCCcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999741 1 133322 1
Q ss_pred -----CCCCCC----------------ccc------------------ccccccEEEEEEEcccccHHHHHHHHhhcCce
Q 043429 434 -----SLLPEP----------------GQR------------------RSIEEPFVKIELLTPKEYIGSLMELAQDRRGE 474 (646)
Q Consensus 434 -----~~~p~~----------------~~i------------------~~llEP~~~~~I~~P~e~~g~v~~~~~~rrG~ 474 (646)
.++|.. ++. ..||||||.++|.+|+||+|+||++|++|||+
T Consensus 550 ~~G~l~g~pv~~v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~ 629 (693)
T 2xex_A 550 ENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGR 629 (693)
T ss_dssp HTCSSSSCCBCSEEEEEEEEECCTTTCCHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCE
T ss_pred hcCCccCCceeeEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcCCEEEeeeEEEEEEEcHHHHHHHHHHHHhCCcE
Confidence 134432 111 28999999999999999999999999999999
Q ss_pred EeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeecc
Q 043429 475 FKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKESQ 526 (646)
Q Consensus 475 ~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~~ 526 (646)
+.+++..+ ++++|+|++|++|| +||+++|||+|+|+|+|+|+|+||++.+
T Consensus 630 i~~~~~~~-~~~~i~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~~~ 679 (693)
T 2xex_A 630 VDGMEPRG-NAQVVNAYVPLSEM-FGYATSLRSNTQGRGTYTMYFDHYAEVP 679 (693)
T ss_dssp EEEEEEET-TEEEEEEEEEGGGC-TTHHHHHHHHTTTCCEEEEEEEEEEECC
T ss_pred eecccccC-CeEEEEEEeCHHHH-HhHHHHhHHhcCCceEEEEEeCcceECC
Confidence 99999876 78999999999999 8999999999999999999999999854
No 7
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=1.3e-72 Score=651.76 Aligned_cols=429 Identities=31% Similarity=0.456 Sum_probs=308.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccc---cccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeC
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE---MKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDT 158 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~---~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDT 158 (646)
.++++||+|+||+|||||||+++|+..++.+.+.+ .+.+++|+++.|+++|+|+......+.|. ++.++||||
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~----~~~i~liDT 84 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK----DHRINIIDT 84 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET----TEEEEEECC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC----CeEEEEEEC
Confidence 35689999999999999999999998777665432 24678999999999999999998888776 799999999
Q ss_pred CCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCC----
Q 043429 159 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLD---- 234 (646)
Q Consensus 159 PG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~---- 234 (646)
|||.+|..++.++++.+|++|+|+|++++.+.++...|..+...++|+++|+||+|+..++..+..+++.+.++..
T Consensus 85 PG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~~~ 164 (691)
T 1dar_A 85 PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVM 164 (691)
T ss_dssp CSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEEC
T ss_pred cCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhCCCccce
Confidence 9999999999999999999999999999999999999999999999999999999999888777777777765421
Q ss_pred --------------------------------------------------------------------------------
Q 043429 235 -------------------------------------------------------------------------------- 234 (646)
Q Consensus 235 -------------------------------------------------------------------------------- 234 (646)
T Consensus 165 ~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~ 244 (691)
T 1dar_A 165 QLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVA 244 (691)
T ss_dssp EEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHH
T ss_pred eccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHH
Confidence
Q ss_pred ----------cccccccccccccchhHHHHHHHHhCCCCCC------------------CCCCCceEEEEEEEeecc---
Q 043429 235 ----------CTNAILCSAKEGIGINEILNAIVKRIPPPSN------------------TAGCPFRALIFDRIIMLM--- 283 (646)
Q Consensus 235 ----------~~~i~~vSAk~g~GV~eLl~~I~~~ip~P~~------------------~~~~pl~~~vf~~~~d~~--- 283 (646)
..|++++||++|.|+++|++.|++++|+|.. +++.||.|+|||+++|+|
T Consensus 245 ~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G~ 324 (691)
T 1dar_A 245 AIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGR 324 (691)
T ss_dssp HHHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEEEEEETTTEE
T ss_pred HHHHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEEEEEcCCCCc
Confidence 0258899999999999999999999999975 367899999999999998
Q ss_pred --------------ceEE--------------ecCCCceEEc----cceeeEEEeecccccccccCCeeeecCccccCCC
Q 043429 284 --------------KLEC--------------YPPIKCKWKN----FKQVGYLSASIRSVADARVGDTITHFNRKADNLL 331 (646)
Q Consensus 284 --------------~~i~--------------~~~~~~~~~v----aG~Vg~i~~~i~~~~~~~~GDtl~~~~~~~~~~l 331 (646)
++|+ .+.+.+..+| ||||+++. | ++++++||||++.+++. .++
T Consensus 325 ~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~-g---l~~~~~Gdtl~~~~~~~-~~l 399 (691)
T 1dar_A 325 LTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVV-G---LKETITGDTLVGEDAPR-VIL 399 (691)
T ss_dssp EEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEEE-C---CSSCCTTCEEEETTCCC-CBC
T ss_pred EEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcceecCCCEEEEe-C---cccCccCCEEecCCCcc-ccc
Confidence 3444 4444444444 99999876 4 56789999999877652 358
Q ss_pred CCcccCCceEEeeeeeCCCCCHHHHHHHHHHHhhcCCceEEE--eCCCccccceeEeccchhhHHHHHHHHHHHHcCceE
Q 043429 332 PGYEEATPMVFCGLFPVDADQFPELRDALEKLQLNDAALKFE--PETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSL 409 (646)
Q Consensus 332 ~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~~~--~e~~~~lg~g~r~gflG~lHlei~~erL~~e~~~~v 409 (646)
++++.++|+++++|+|.++.|+++|.+||+||++|||+|+++ +|++++++.| ||+|||||+++||++|||+++
T Consensus 400 ~~~~~~~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g-----~Gelhlei~~~rL~~~~~v~v 474 (691)
T 1dar_A 400 ESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISG-----MGELHLEIIVDRLKREFKVDA 474 (691)
T ss_dssp C--------------------------------CCCCSCEEEC-----CEEEEE-----SCCC---------CCCEEEBT
T ss_pred CCCCCCCceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEe-----CCHHHHHHHHHHHHHhhCceE
Confidence 899999999999999999999999999999999999999998 7899999888 999999999999999999999
Q ss_pred EEecceeEEEEEeeCC---------------e----EEEEeC------------------CC------------------
Q 043429 410 ITTAPSVVYRVNCVNG---------------Q----TVECSN------------------PS------------------ 434 (646)
Q Consensus 410 ~~t~P~V~Y~e~~~~g---------------~----~~~~~~------------------p~------------------ 434 (646)
.+++|+|+||||+++. + ++.+++ |.
T Consensus 475 ~~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~ 554 (691)
T 1dar_A 475 NVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGP 554 (691)
T ss_dssp TTBCCCBCCEEECSSCEEEEEEEEECCSSSCEEEEEEEEEEECCTTCCEEEEECCCTTSSCTTTHHHHHHHHHHHTTSCT
T ss_pred EEeCCeEEEEEeeccceeeeeeeccccCCCCceEEEEEEEEECCCCCCCEEeecccCCcCcHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999741 1 123322 21
Q ss_pred --CCCCC----------------ccc------------------ccccccEEEEEEEcccccHHHHHHHHhhcCceEeee
Q 043429 435 --LLPEP----------------GQR------------------RSIEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEM 478 (646)
Q Consensus 435 --~~p~~----------------~~i------------------~~llEP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~ 478 (646)
++|.. ++. ..||||||.++|.+|++|+|+||++|++|||++.++
T Consensus 555 l~g~pv~~v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~~~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~ 634 (691)
T 1dar_A 555 LIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGM 634 (691)
T ss_dssp TTSCCBCSEEEEEEEECCCTTTBCHHHHHHHHHHHHHHHHHTSCCEEEEEEEEEEEEECTTTTTHHHHHHHHTTCCEEEE
T ss_pred ccCCceeeEEEEEEeeeccccCcchHHHHHHHHHHHHHHHHHcCCEEeeceEEEEEEEcHHHHhHHHHHHHHCCceeecc
Confidence 33422 111 389999999999999999999999999999999999
Q ss_pred eeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeecc
Q 043429 479 KYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKESQ 526 (646)
Q Consensus 479 ~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~~ 526 (646)
++.+ ++++|+|++|++|| +||.++|||+|+|+|+|+|+|+||++.+
T Consensus 635 ~~~~-~~~~i~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~~~ 680 (691)
T 1dar_A 635 EPRG-NAQVIRAFVPLAEM-FGYATDLRSKTQGRGSFVMFFDHYQEVP 680 (691)
T ss_dssp EEET-TEEEEEEEEETTTS-SSHHHHHHHHTTTCCEEEEEEEEEEECC
T ss_pred eecC-CeEEEEEEecHHHH-hhHHHHHHHhcCCceEEEEEeCcceECC
Confidence 9876 78999999999999 8999999999999999999999999854
No 8
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=2e-70 Score=631.61 Aligned_cols=430 Identities=24% Similarity=0.312 Sum_probs=369.0
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccc---cccccccccccccccceeeeeeEEEEEEEecCCCeEEEEE
Q 043429 80 VPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE---MKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLI 156 (646)
Q Consensus 80 ~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~---~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~li 156 (646)
++.+..++|+|+||+|||||||+++|+..++.+...+ .+..++|..+.++++|+|+..+...+.+. .+.++||
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~----~~~~nli 79 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR----GHRVFLL 79 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET----TEEEEEE
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC----CEEEEEE
Confidence 3456789999999999999999999998776544332 24567888888899999999988877765 7999999
Q ss_pred eCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCC---
Q 043429 157 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL--- 233 (646)
Q Consensus 157 DTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~--- 233 (646)
|||||.+|..++.++++.+|++++|+|++++.+.++...|..+...++|+++|+||+|+. .+..+..+++.+.++.
T Consensus 80 DTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~~~~~ 158 (665)
T 2dy1_A 80 DAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLGPILP 158 (665)
T ss_dssp ECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHCSEEE
T ss_pred eCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHHHHHHhCCcce
Confidence 999999999999999999999999999999999999999999999999999999999998 8778888888877660
Q ss_pred --------------------------------------------------------------------------------
Q 043429 234 -------------------------------------------------------------------------------- 233 (646)
Q Consensus 234 -------------------------------------------------------------------------------- 233 (646)
T Consensus 159 ~~~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~ 238 (665)
T 2dy1_A 159 IDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAF 238 (665)
T ss_dssp CEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHH
T ss_pred EEeeecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHH
Confidence
Q ss_pred -------CcccccccccccccchhHHHHHHHHhCCCCCCC-CCCCceEEEEEEEeecc-----------------ceEE-
Q 043429 234 -------DCTNAILCSAKEGIGINEILNAIVKRIPPPSNT-AGCPFRALIFDRIIMLM-----------------KLEC- 287 (646)
Q Consensus 234 -------~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P~~~-~~~pl~~~vf~~~~d~~-----------------~~i~- 287 (646)
...|++++||++|.||++||++|++.+|+|... ++.||.++||++++|+| ++|+
T Consensus 239 ~~~~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~~g~~v~~ 318 (665)
T 2dy1_A 239 HEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQS 318 (665)
T ss_dssp HHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCHHHHHCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTEEEBC
T ss_pred HHHHHhCCeeEEEEeecccCcCHHHHHHHHHHhCCCccccCCCCCeEEEEEEEEEcCCCCeEEEEEEcccEEecCCEEEc
Confidence 013689999999999999999999999999754 68899999999999998 3332
Q ss_pred -----------ecCCCceEEc----cceeeEEEeecccccccccCCeeeecCccccCCCCCcccCCceEEeeeeeCCCCC
Q 043429 288 -----------YPPIKCKWKN----FKQVGYLSASIRSVADARVGDTITHFNRKADNLLPGYEEATPMVFCGLFPVDADQ 352 (646)
Q Consensus 288 -----------~~~~~~~~~v----aG~Vg~i~~~i~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~p~v~~~i~p~~~~d 352 (646)
.+.+.+..+| ||||+.+. +++++++||||++.+++...++++++.+.|+++++++|.++.|
T Consensus 319 ~~~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~----gl~~~~~Gdtl~~~~~~~~~~l~~~~~~~P~~~~~i~p~~~~d 394 (665)
T 2dy1_A 319 EAGQVRLPHLYVPMGKDLLEVEEAEAGFVLGVP----KAEGLHRGMVLWQGEKPESEEVPFARLPDPNVPVALHPKGRTD 394 (665)
T ss_dssp TTSCEEESSEEEEETTEEEEESCEETTCEEEES----SCTTCCTTCEEESSSCCCGGGSCCCCCCCCCEEEEEEESSHHH
T ss_pred CCCeEEEeEEEEEeCCCeeECCEECCCCEEEEe----CCccCccCCEEecCCCccccccCCCCCCCceEEEEEEECChhh
Confidence 2333333344 99998775 4567899999998776522358899999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCceEEE--eCCCccccceeEeccchhhHHHHHHHHHHHHcCceEEEecceeEEEEEeeCC-----
Q 043429 353 FPELRDALEKLQLNDAALKFE--PETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVNCVNG----- 425 (646)
Q Consensus 353 ~~~L~~aL~kL~~~Dpsl~~~--~e~~~~lg~g~r~gflG~lHlei~~erL~~e~~~~v~~t~P~V~Y~e~~~~g----- 425 (646)
+++|.++|+||.+|||+|+++ +|++++++.| +|+|||||+++||+ |||+++.+++|+|+||||+++.
T Consensus 395 ~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g-----~Gelhlei~~~rl~-~~~v~v~~~~p~V~yrEti~~~~~~~~ 468 (665)
T 2dy1_A 395 EARLGEALRKLLEEDPSLKLERQEETGELLLWG-----HGELHLATAKERLQ-DYGVEVEFSVPKVPYRETIKKVAEGQG 468 (665)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEE-----SSHHHHHHHHHHHH-HTTCCEEEECCCCCCEEEESSCEEEEE
T ss_pred HHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEe-----cCHHHHHHHHHHHH-HCCceEEEeCCEEEEEEeeccceeeee
Confidence 999999999999999999998 5789999888 99999999999999 9999999999999999999651
Q ss_pred ----------e----EEEEeC-----------------------------------CCCCCCC----------------c
Q 043429 426 ----------Q----TVECSN-----------------------------------PSLLPEP----------------G 440 (646)
Q Consensus 426 ----------~----~~~~~~-----------------------------------p~~~p~~----------------~ 440 (646)
+ ++.+++ +.++|.. +
T Consensus 469 ~~~k~~gg~g~~~~v~~~~eP~~g~~f~~~~~~g~~~~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~ds~ 548 (665)
T 2dy1_A 469 KYKKQTGGHGQYGDVWLRLEPASEYGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSS 548 (665)
T ss_dssp EEEEEETTEEEEEEEEEEEEECSSCEEEECCCTTSSCGGGHHHHHHHHHHHHTSCTTTSCCBCSEEEEEEEEECCTTTBC
T ss_pred ecccccCCCcceEEEEEEEEECCCCEEeeeccCCcchHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEeeeccCCCCC
Confidence 1 233433 3456642 1
Q ss_pred cc------------------ccccccEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeCCCEEEEEEEechhhhHhhHH
Q 043429 441 QR------------------RSIEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFF 502 (646)
Q Consensus 441 ~i------------------~~llEP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~ 502 (646)
++ ..||||||.++|.+|++|+|+||++|++|||++.++++.+ ++++|+|++|++|| +||+
T Consensus 549 ~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i~~~~~~~-~~~~i~a~~P~~e~-~~~~ 626 (665)
T 2dy1_A 549 DLAFQIAASLAFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEG-ALSVVHAEVPLAEV-LEYY 626 (665)
T ss_dssp HHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEET-TEEEEEEEEEGGGC-TTHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEeeeEEEEEEECHHHHHHHHHHHHHCCCEEeCcEecC-CeEEEEEEECHHHH-hhHH
Confidence 11 1799999999999999999999999999999999999876 89999999999999 8999
Q ss_pred HHhcccCcceEEEEEEEcceeecc
Q 043429 503 DQLKSRTKGYASMEYTFLGYKESQ 526 (646)
Q Consensus 503 ~~Lks~T~G~as~~~~~~~y~~~~ 526 (646)
++|||+|+|+|+|+|+|+||++.+
T Consensus 627 ~~Lrs~T~G~~~~~~~f~~y~~~~ 650 (665)
T 2dy1_A 627 KALPGLTGGAGAYTLEFSHYAEVP 650 (665)
T ss_dssp HHHHHHHTTCCEEEEEEEEEEECC
T ss_pred HHhHhhcCCcEEEEEEeCceeECC
Confidence 999999999999999999999854
No 9
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=1.6e-65 Score=603.83 Aligned_cols=432 Identities=26% Similarity=0.348 Sum_probs=335.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCcccccc-ccccccccccccccceeeeeeEEEEEEEe------------cC
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREM-KEQFLDNMDLERERGITIKLQAARMRYVF------------EN 148 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~-~~~~~d~~~~e~e~giTi~~~~~~~~~~~------------~~ 148 (646)
.++++||+|+||+|||||||+++|+..++.+..... +.+++|+++.|+++|+|+......+.|.. ++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 456899999999999999999999998887765432 35788999999999999999998888862 44
Q ss_pred CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCC----CCc----
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPG----AEP---- 220 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~----~~~---- 220 (646)
.++.++|||||||.+|..++.++++.+|++|+|||++++.+.++...|..+...++|+++|+||+|+.. .++
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~e~~ 175 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLY 175 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999999863 222
Q ss_pred ---hHHHHHHHHHhC-----------CCc--cccccccccccc-------------------------------------
Q 043429 221 ---SRVAREIEEVIG-----------LDC--TNAILCSAKEGI------------------------------------- 247 (646)
Q Consensus 221 ---~~~~~el~~~l~-----------~~~--~~i~~vSAk~g~------------------------------------- 247 (646)
.+..+++...++ +.+ .++..+||++|.
T Consensus 176 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~~~ 255 (842)
T 1n0u_A 176 QTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTK 255 (842)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETTTT
T ss_pred HHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCCCC
Confidence 333344444431 221 134555553321
Q ss_pred ------------------------------------------------c--------------------------hhHHH
Q 043429 248 ------------------------------------------------G--------------------------INEIL 253 (646)
Q Consensus 248 ------------------------------------------------G--------------------------V~eLl 253 (646)
| ++.|+
T Consensus 256 ~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~pv~~~LL 335 (842)
T 1n0u_A 256 KWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALL 335 (842)
T ss_dssp EEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHSBHHHHHH
T ss_pred eEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhccchHHHHH
Confidence 1 26788
Q ss_pred HHHHHhCCCCC-------------------------CCCCCCceEEEEEEEeecc------------------ceEEecC
Q 043429 254 NAIVKRIPPPS-------------------------NTAGCPFRALIFDRIIMLM------------------KLECYPP 290 (646)
Q Consensus 254 ~~I~~~ip~P~-------------------------~~~~~pl~~~vf~~~~d~~------------------~~i~~~~ 290 (646)
+.|++++|+|. .++++||.|+|||+.+|+| ++|+++.
T Consensus 336 d~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v~~ 415 (842)
T 1n0u_A 336 EMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQG 415 (842)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEEC
T ss_pred HHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEecc
Confidence 99999999985 2567899999999999987 4454332
Q ss_pred C------Cc---eEEc------------------cceeeEEEeecccccccccC-CeeeecCccccCCCCCcccC-CceE
Q 043429 291 I------KC---KWKN------------------FKQVGYLSASIRSVADARVG-DTITHFNRKADNLLPGYEEA-TPMV 341 (646)
Q Consensus 291 ~------~~---~~~v------------------aG~Vg~i~~~i~~~~~~~~G-Dtl~~~~~~~~~~l~~~~~~-~p~v 341 (646)
. ++ ...| ||||+.+. +++++.+| |||++..++. ++++++.+ +|++
T Consensus 416 ~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~----gl~~~~~~t~Tl~~~~~~~--~l~~~~~~~~Pv~ 489 (842)
T 1n0u_A 416 PNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLV----GIDQFLLKTGTLTTSETAH--NMKVMKFSVSPVV 489 (842)
T ss_dssp TTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEE----SCTTTCCSSEEEESCTTCC--CBCCCCCCCSCCE
T ss_pred ccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEE----ccccceecceeecCCCCcc--ccccCCCCCCceE
Confidence 1 11 1222 99997664 46677665 6999865543 47777766 6999
Q ss_pred EeeeeeCCCCCHHHHHHHHHHHhhcCCceEEEe-CCCccccceeEeccchhhHHHHHHHHHHHHc-CceEEEecceeEEE
Q 043429 342 FCGLFPVDADQFPELRDALEKLQLNDAALKFEP-ETSSAMGFGFRCGFLGLLHMEIVQERLEREY-NLSLITTAPSVVYR 419 (646)
Q Consensus 342 ~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~~~~-e~~~~lg~g~r~gflG~lHlei~~erL~~e~-~~~v~~t~P~V~Y~ 419 (646)
+++|+|.++.|.++|.+||+||++|||+|+++. |++++++.| ||+|||||+++||++|| |+++.+++|+|+||
T Consensus 490 ~~avep~~~~d~~kl~~~L~kL~~eDp~l~v~~~etge~il~g-----~GelHLei~~~rL~~~f~~vev~~~~P~V~yr 564 (842)
T 1n0u_A 490 QVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAG-----TGELHLEICLQDLEHDHAGVPLKISPPVVAYR 564 (842)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHHCTTCEEEECTTSCEEEEE-----SSHHHHHHHHHHHHHTTSCSCEEEECCCCCCE
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHhCCcEEEEEcCCCCEEEEe-----ccHHHHHHHHHHHHHHhcCCceEecCcEEEEE
Confidence 999999999999999999999999999999985 588888888 99999999999999999 99999999999999
Q ss_pred EEeeCCe---------------EEEEeC----------------------------------------------------
Q 043429 420 VNCVNGQ---------------TVECSN---------------------------------------------------- 432 (646)
Q Consensus 420 e~~~~g~---------------~~~~~~---------------------------------------------------- 432 (646)
||+++.. .+.+++
T Consensus 565 ETi~~~~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~~~~~~iw~~~p~~~~~~ 644 (842)
T 1n0u_A 565 ETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPN 644 (842)
T ss_dssp EEESSCCSSCEEEECTTSSCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHTEEEESSTTTSSE
T ss_pred EeeccccccceeeccCCcceEEEEEEEECcHHHhhHhhcCeecccccHHHHHHHHHHhcCcchhhhhceeeeccCCCCCc
Confidence 9997531 122211
Q ss_pred -------C------------------------CCCCCC---------------ccc---------------------ccc
Q 043429 433 -------P------------------------SLLPEP---------------GQR---------------------RSI 445 (646)
Q Consensus 433 -------p------------------------~~~p~~---------------~~i---------------------~~l 445 (646)
+ .++|.. +.. .+|
T Consensus 645 ~f~~~~~g~~~~~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~~~~~g~f~~a~~~a~~~a~~~a~p~L 724 (842)
T 1n0u_A 645 LVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKI 724 (842)
T ss_dssp EEEECCCCCTTHHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHHHHHHHHHSCEEE
T ss_pred EEEecCCCccccHHHHHHHHHHHHHHHhcCCcCCceeeeEEEEEEEeeecCCccccchhHHHHHHHHHHHHHHHhCCCeE
Confidence 0 012211 000 189
Q ss_pred cccEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeCC-CEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceee
Q 043429 446 EEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTE-SRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKE 524 (646)
Q Consensus 446 lEP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~-~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~ 524 (646)
|||||.++|.+|++|+|+||++|++|||++.+++..++ ++.+|++++|++|| ++|.++|||+|+|+|+|+++|+||++
T Consensus 725 LEPi~~veI~vP~e~~G~V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~-fgy~~~LRs~T~G~g~~~~~F~~y~~ 803 (842)
T 1n0u_A 725 QEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNES-FGFTGELRQATGGQAFPQMVFDHWST 803 (842)
T ss_dssp EEEEEEEEEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGC-TTHHHHHHHHTTTCCEEEEEEEEEEE
T ss_pred EeeEEEEEEEccHHHHHHHHHHHHhcCcEEeccccCCCCceEEEEEEcChHHh-hhhHHHHHhhCCCCceEEEEecccee
Confidence 99999999999999999999999999999999987543 57899999999999 89999999999999999999999998
Q ss_pred c
Q 043429 525 S 525 (646)
Q Consensus 525 ~ 525 (646)
.
T Consensus 804 v 804 (842)
T 1n0u_A 804 L 804 (842)
T ss_dssp C
T ss_pred C
Confidence 4
No 10
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=2.6e-62 Score=551.14 Aligned_cols=364 Identities=27% Similarity=0.381 Sum_probs=295.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccc-------cccccccccccccccceeeeeeEEEEEEEecCCCeEEEE
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE-------MKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNL 155 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~-------~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~l 155 (646)
+++|||+|+||+|||||||+++||..+|.+.+.+ ..++++|+++.|++|||||.+..+++.|+ ++.+||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~----~~~iNl 104 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYR----DRVVNL 104 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEET----TEEEEE
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEEC----CEEEEE
Confidence 4689999999999999999999999999987643 23579999999999999999999999997 899999
Q ss_pred EeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCc
Q 043429 156 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDC 235 (646)
Q Consensus 156 iDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~ 235 (646)
||||||.||..++.++|+.+|+||+||||.+|++.||...|..+.+.++|+++|+||+|++++++.++.+++++.++...
T Consensus 105 IDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~~~ 184 (548)
T 3vqt_A 105 LDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIEC 184 (548)
T ss_dssp ECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTSEE
T ss_pred EeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998875311
Q ss_pred --------------------------------------------------------------------------------
Q 043429 236 -------------------------------------------------------------------------------- 235 (646)
Q Consensus 236 -------------------------------------------------------------------------------- 235 (646)
T Consensus 185 ~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~ 264 (548)
T 3vqt_A 185 APMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYL 264 (548)
T ss_dssp EESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHHH
T ss_pred EeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHHH
Confidence
Q ss_pred ----ccccccccccccchhHHHHHHHHhCCCCCC---------CCCCCceEEEEEEEee---cc----------------
Q 043429 236 ----TNAILCSAKEGIGINEILNAIVKRIPPPSN---------TAGCPFRALIFDRIIM---LM---------------- 283 (646)
Q Consensus 236 ----~~i~~vSAk~g~GV~eLl~~I~~~ip~P~~---------~~~~pl~~~vf~~~~d---~~---------------- 283 (646)
.|+++.||++|.||+.||+.|++++|+|.. +.+.||.|+||+..+| +|
T Consensus 265 ~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~~RV~sG~l~~ 344 (548)
T 3vqt_A 265 KGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRICSGTFTR 344 (548)
T ss_dssp TTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEEEEEEEESCEET
T ss_pred hCCcceeeecccccCcCHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCeEEEEEEecceecC
Confidence 157889999999999999999999999964 3467999999999877 55
Q ss_pred -ceEEecCCCceEEc------------------cceeeEEEeecccccccccCCeeeecCccccCCCCCcccCCceEEee
Q 043429 284 -KLECYPPIKCKWKN------------------FKQVGYLSASIRSVADARVGDTITHFNRKADNLLPGYEEATPMVFCG 344 (646)
Q Consensus 284 -~~i~~~~~~~~~~v------------------aG~Vg~i~~~i~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~p~v~~~ 344 (646)
++|+.+..++...+ ||||+++. +++++++||||++.+++. ++++++.+.|+++++
T Consensus 345 g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~----gl~~~~~GDTl~~~~~~~--~~~~i~~~~P~~~~a 418 (548)
T 3vqt_A 345 GMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIP----NHGTIKIGDTFTESKEVL--KFVGIPNFAPEHFRR 418 (548)
T ss_dssp TCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEE----CSSCCCTTCEEESSSSCC--CBCCCEEECCSEEEE
T ss_pred CCEEEeeccccccccchhhhhccccccccCEEecCCEEEec----CCccCccCCEecCCCCcc--ccCCCCCCCCcceee
Confidence 55666666655554 99998765 578899999999876654 478889999999999
Q ss_pred eeeCCCCCHHHHHHHHHHHhhcCCceEEEeCCCccccceeEeccchhhHHHHHHHHHHHHcCceEEE-----ecceeEEE
Q 043429 345 LFPVDADQFPELRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLIT-----TAPSVVYR 419 (646)
Q Consensus 345 i~p~~~~d~~~L~~aL~kL~~~Dpsl~~~~e~~~~lg~g~r~gflG~lHlei~~erL~~e~~~~v~~-----t~P~V~Y~ 419 (646)
++|.++.|+++|.++|++|++|||+..+..+.+ .++.|++||+|||||+++||+||||+++++ +.|+|+||
T Consensus 419 v~p~~~~d~~kl~~~L~~L~eed~~~v~~~~et----~e~il~g~GeLHLeI~~erL~~ey~vev~~e~v~~~~P~V~Yr 494 (548)
T 3vqt_A 419 VRLKNPLKAKQLQKGLEQLAEEGAVQLFRPLVN----NDYILGAVGVLQFDVIVARLADEYGVDAVYEGVSTHTARWVYC 494 (548)
T ss_dssp EEESCGGGHHHHHHHHHHHHHTTSSEEEEESSS----CCCEEEESSTHHHHHHHHHHHHHHCCCEEEEECSCCEEEEEEC
T ss_pred eeeCCchhHHHHHHHHHHhhhcCceeEEEECCC----CcEEEEEECHHHHHHHHHHHHHHhCCCEEEeeccccCceEEec
Confidence 999999999999999999999999777664433 247788899999999999999999999885 57999999
Q ss_pred EEeeCC--------eEEEEeCCCC----CCCCcccccccccEEEEEEEccccc
Q 043429 420 VNCVNG--------QTVECSNPSL----LPEPGQRRSIEEPFVKIELLTPKEY 460 (646)
Q Consensus 420 e~~~~g--------~~~~~~~p~~----~p~~~~i~~llEP~~~~~I~~P~e~ 460 (646)
||+++. ..+..+.+.+ +|++..+..+.|||.++++..|+|.
T Consensus 495 Eti~~~~~~~~~~kkq~g~~gq~~~V~L~~~~~~l~~~~e~~~~~~f~~~~Ei 547 (548)
T 3vqt_A 495 EDKKIFADFQDYHRGELAVDAEGALAYLAPNPWRLESAMERYPKVEFRTTREI 547 (548)
T ss_dssp SCHHHHHHHHHHTGGGEEEETTSCEEEEESSHHHHHHHHHHCTTSEEESEEEC
T ss_pred CCccchhhhhhhhhheeeecCCCCEEEEecCHHHhHHhhccCCCeEEeeeccC
Confidence 998641 1111122211 4666667788999999999999885
No 11
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=3.4e-52 Score=466.58 Aligned_cols=327 Identities=29% Similarity=0.429 Sum_probs=280.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCcccccc-------ccccccccccccccceeeeeeEEEEEEEecCCCeEEEE
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREM-------KEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNL 155 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~-------~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~l 155 (646)
+++|||+|+||+|+|||||+++|+..++.+...+. +..+.|+++.|+++|+|+......+.|. ++.++|
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~----~~~i~l 86 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK----DYLINL 86 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET----TEEEEE
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC----CEEEEE
Confidence 35799999999999999999999988887754432 3567899999999999999999888876 899999
Q ss_pred EeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCc
Q 043429 156 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDC 235 (646)
Q Consensus 156 iDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~ 235 (646)
||||||.+|..++.++++.+|++|+|+|++++.+.++...|..+...++|+++|+||+|+.+++..+..+++.+.++...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~~~ 166 (528)
T 3tr5_A 87 LDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIHC 166 (528)
T ss_dssp ECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEE
T ss_pred EECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999998888888888887776421
Q ss_pred --------------------------------------------------------------------------------
Q 043429 236 -------------------------------------------------------------------------------- 235 (646)
Q Consensus 236 -------------------------------------------------------------------------------- 235 (646)
T Consensus 167 ~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~ 246 (528)
T 3tr5_A 167 APVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGYL 246 (528)
T ss_dssp EESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred eeeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHh
Confidence
Q ss_pred ----ccccccccccccchhHHHHHHHHhCCCCCCC---------CCCCceEEEEEEE--eec-c----------------
Q 043429 236 ----TNAILCSAKEGIGINEILNAIVKRIPPPSNT---------AGCPFRALIFDRI--IML-M---------------- 283 (646)
Q Consensus 236 ----~~i~~vSAk~g~GV~eLl~~I~~~ip~P~~~---------~~~pl~~~vf~~~--~d~-~---------------- 283 (646)
.|++++||++|.||++|+++|++.+|+|... .+.||.|+|||+. +|| |
T Consensus 247 ~~~~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~RV~sG~l~~ 326 (528)
T 3tr5_A 247 KGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFLRIASGQYQK 326 (528)
T ss_dssp TTSEEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEEEEEEESCEET
T ss_pred cCceeEEEeccccCCccHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEEEEEEecCeEcC
Confidence 1678999999999999999999999999753 2589999999987 488 6
Q ss_pred -ceEEecCCCceEEc------------------cceeeEEEeecccccccccCCeeeecCccccCCCCCcccCCceEEee
Q 043429 284 -KLECYPPIKCKWKN------------------FKQVGYLSASIRSVADARVGDTITHFNRKADNLLPGYEEATPMVFCG 344 (646)
Q Consensus 284 -~~i~~~~~~~~~~v------------------aG~Vg~i~~~i~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~p~v~~~ 344 (646)
+.++..+.++...| ||||+.+ .+++++++||||++.. +. .++++..+.|+++++
T Consensus 327 g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~----~~l~~~~~GDtl~~~~-~~--~~~~~~~~~P~~~~~ 399 (528)
T 3tr5_A 327 GMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGL----HNHGTIQIGDTFTQGE-RF--KFTGIPNFASELFRL 399 (528)
T ss_dssp TEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEE----EESSSCCTTCEEESSC-CC--CBCCCEEECCSEEEE
T ss_pred CCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEE----cCCCCCccCCEEcCCC-Cc--ccCCCCCCCCCEEEE
Confidence 55666666666555 9998644 4678899999999843 22 256666778999999
Q ss_pred eeeCCCCCHHHHHHHHHHHhhcCCceEEEeCCCccccceeEeccchhhHHHHHHHHHHHHcCceEEEecceeEEEEEeeC
Q 043429 345 LFPVDADQFPELRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVNCVN 424 (646)
Q Consensus 345 i~p~~~~d~~~L~~aL~kL~~~Dpsl~~~~e~~~~lg~g~r~gflG~lHlei~~erL~~e~~~~v~~t~P~V~Y~e~~~~ 424 (646)
++|.++.|+++|.+||++|++|||+..+.++. +.+++||+||+|||||+++||++|||+++.+++|+|+|++++..
T Consensus 400 i~~~~~~d~~kl~~aL~~L~~ED~~~~~~~~~----~~~~il~~~G~lhlev~~~rL~~ey~v~v~~~~~~v~~~~~i~~ 475 (528)
T 3tr5_A 400 VRLKDPLKQKALLKGLTQLSEEGATQLFRPLD----SNELILGAVGLLQFDVVAYRLENEYNVKCVYESVNVVTARWVIC 475 (528)
T ss_dssp EEESCGGGHHHHHHHHHHHHHTTSCEEEEETT----CCCEEEEESSTHHHHHHHHHHHHHHCCCEEEECCSCCEEEEEEC
T ss_pred EEECChhHHHHHHHHHHHHHhcCCeEEEEcCC----CCCEEEEEEcHHHHHHHHHHHHHHhCcEEEEecCceEEEEEecC
Confidence 99999999999999999999999974444433 24688999999999999999999999999999999999998754
No 12
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=4.1e-50 Score=450.20 Aligned_cols=324 Identities=25% Similarity=0.363 Sum_probs=255.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCcccccc-------ccccccccccccccceeeeeeEEEEEEEecCCCeEEEE
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREM-------KEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNL 155 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~-------~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~l 155 (646)
++++||+|+||+|||||||+++|+..++.+...+. ...++|+++.|+++|+|+......+.|. ++.++|
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~----~~~i~l 86 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH----DCLVNL 86 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET----TEEEEE
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC----CeEEEE
Confidence 35689999999999999999999987666543221 2567899999999999999988888776 899999
Q ss_pred EeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCC-
Q 043429 156 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLD- 234 (646)
Q Consensus 156 iDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~- 234 (646)
||||||.+|..++.++++.+|++|+|+|++++.+.++...|..+...++|+++|+||+|+..++..+..+++++.++..
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~~ 166 (529)
T 2h5e_A 87 LDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGC 166 (529)
T ss_dssp ECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEE
T ss_pred EECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999999999999988888899999999999998887766666766654321
Q ss_pred --------------------------------------------------------------------------------
Q 043429 235 -------------------------------------------------------------------------------- 234 (646)
Q Consensus 235 -------------------------------------------------------------------------------- 234 (646)
T Consensus 167 ~~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~~ 246 (529)
T 2h5e_A 167 APITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELF 246 (529)
T ss_dssp EESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred cceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhhhhHHHH
Confidence
Q ss_pred ----cccccccccccccchhHHHHHHHHhCCCCCCCC---------CCCceEEEEEEEe--e-cc---------------
Q 043429 235 ----CTNAILCSAKEGIGINEILNAIVKRIPPPSNTA---------GCPFRALIFDRII--M-LM--------------- 283 (646)
Q Consensus 235 ----~~~i~~vSAk~g~GV~eLl~~I~~~ip~P~~~~---------~~pl~~~vf~~~~--d-~~--------------- 283 (646)
..|++++||++|.||++|++.|++++|+|.... +.||.|+|||+.. | +|
T Consensus 247 ~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G~i~~~RV~sG~l~ 326 (529)
T 2h5e_A 247 LAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYE 326 (529)
T ss_dssp HTTSEEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSCCCEEEEEEESCEE
T ss_pred HhCceeEEEeeecccCCCHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCceEEEEEEecCeEc
Confidence 126788999999999999999999999996431 5799999999976 4 33
Q ss_pred --ceEEecCCCceEEc------------------cceeeEEEeecccccccccCCeeeecCccccCCCCCcccCCceEEe
Q 043429 284 --KLECYPPIKCKWKN------------------FKQVGYLSASIRSVADARVGDTITHFNRKADNLLPGYEEATPMVFC 343 (646)
Q Consensus 284 --~~i~~~~~~~~~~v------------------aG~Vg~i~~~i~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~p~v~~ 343 (646)
++++.++.|+...| ||||+.+ .+++++++||||++.+. . .+++++.+.|++++
T Consensus 327 ~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i----~~l~~~~~Gdtl~~~~~-~--~~~~~~~~~P~~~~ 399 (529)
T 2h5e_A 327 KGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGL----HNHGTIQIGDTFTQGEM-M--KFTGIPNFAPELFR 399 (529)
T ss_dssp TTCEEEETTTTEEEECSCEECCCC-----CCEECTTCEEEE----CCSSCCCTTCEEESSCC-C--CBCCCEEECCSEEE
T ss_pred CCCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEE----eccCCCccCCEeecCCc-c--ccCCCCCCCccEEE
Confidence 66666666665554 9998644 46788999999998652 2 46777788899999
Q ss_pred eeeeCCCCCHHHHHHHHHHHhhcCCceEEE-e-CCCccccceeEeccchhhHHHHHHHHHHHHcCceEEEecceeEEEEE
Q 043429 344 GLFPVDADQFPELRDALEKLQLNDAALKFE-P-ETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVN 421 (646)
Q Consensus 344 ~i~p~~~~d~~~L~~aL~kL~~~Dpsl~~~-~-e~~~~lg~g~r~gflG~lHlei~~erL~~e~~~~v~~t~P~V~Y~e~ 421 (646)
+++|.++.|+++|.+||++|++||| +.+. . +++ +++||+||+|||||+++||++|||+++.+++|+|+||||
T Consensus 400 ~v~~~~~~d~~kl~~~L~~L~~ed~-~~~~~~~~t~-----~~il~~~Gelhlev~~~rl~~ey~v~v~~~~~~v~y~et 473 (529)
T 2h5e_A 400 RIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPISNN-----DLIVGAVGVLQFDVVVARLKSEYNVEAVYESVNVATARW 473 (529)
T ss_dssp EEEESCC---CTHHHHHHHHHHTTS-CEEEEETTSC-----CEEEEESSTHHHHHHHHHHHHHSSCCEEEECCCCSEEEE
T ss_pred EEEECChHHHHHHHHHHHHHHhhCC-EEEEEeCCCC-----cEEEEEECHHHHHHHHHHHHHHhCcEEEEecCceeEEEE
Confidence 9999999999999999999999998 6665 3 343 588888999999999999999999999999999999999
Q ss_pred ee
Q 043429 422 CV 423 (646)
Q Consensus 422 ~~ 423 (646)
+.
T Consensus 474 i~ 475 (529)
T 2h5e_A 474 VE 475 (529)
T ss_dssp EE
T ss_pred Ec
Confidence 85
No 13
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=100.00 E-value=2.9e-43 Score=365.35 Aligned_cols=203 Identities=24% Similarity=0.320 Sum_probs=161.6
Q ss_pred ccccccccCCeeeecCccccCCCCCcccCCceEEeeeeeCCC----CC-----HHHHHHHHHHHhhcCCceEEEeCCCcc
Q 043429 309 RSVADARVGDTITHFNRKADNLLPGYEEATPMVFCGLFPVDA----DQ-----FPELRDALEKLQLNDAALKFEPETSSA 379 (646)
Q Consensus 309 ~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~p~v~~~i~p~~~----~d-----~~~L~~aL~kL~~~Dpsl~~~~e~~~~ 379 (646)
.+++++++||||++..++ .+||+++.++|+++++++|.+. .| .++|++||.||++|||||+++++.+.
T Consensus 4 ~Gl~~~~iGDTl~~~~~p--~~L~~~~~~ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~~~~t- 80 (332)
T 3e3x_A 4 TGLGELKISDTICAQNAV--EALPALSVDEPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQTDDP- 80 (332)
T ss_dssp ---------------------------CCCCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEECSST-
T ss_pred cCCCCCccCCEEcCCCCc--ccCCCCCCCCCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEEcCCC-
Confidence 356789999999988766 3699999999999999999987 65 67999999999999999999976554
Q ss_pred ccceeEeccchhhHHHHHHHHHHHHcCceEEEecceeEEEEEeeCCeEEEEeCCCCCCCCcccccccccEEEEEEEcccc
Q 043429 380 MGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVNCVNGQTVECSNPSLLPEPGQRRSIEEPFVKIELLTPKE 459 (646)
Q Consensus 380 lg~g~r~gflG~lHlei~~erL~~e~~~~v~~t~P~V~Y~e~~~~g~~~~~~~p~~~p~~~~i~~llEP~~~~~I~~P~e 459 (646)
.+|+|+|||+|||||++|||+|| |+++.+++|+|+|||+ +| +++|||+.++|.+|+|
T Consensus 81 --~~~~v~G~GELHLeIl~ErLrrE-g~ev~v~~P~V~YrEt--~G------------------~llEPi~~v~I~vPee 137 (332)
T 3e3x_A 81 --DKFRVSGRGELHLSILIENMRRE-GFELAVSRPEVIIXEE--DG------------------QLMEPFETVTIDVMEE 137 (332)
T ss_dssp --TEEEEEESSHHHHHHHHHHHHHH-TBCEEECCCEECCEEE--TT------------------EEEEEEEEEEEEEEGG
T ss_pred --CeEEEEeeCHHHHHHHHHHHHhc-CceEEEeCCEEEEEEE--CC------------------EEECcEEEEEEEECHH
Confidence 47999999999999999999999 9999999999999997 44 4899999999999999
Q ss_pred cHHHHHHHHhhcCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEEEEcceeeccceeeeeeccCCc
Q 043429 460 YIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYKESQLIKLDILINGDC 538 (646)
Q Consensus 460 ~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~~~~~~k~~il~n~~~ 538 (646)
|+|+||++|++|||++.+|++.+++++.|+|.+|++|| +||+++|+|+|+|+|+|+|+|+||+++..-.+.-..||.-
T Consensus 138 ~~G~Vm~~L~~RRG~i~~m~~~~~g~~~I~~~vPl~el-~Gy~~eLrS~T~G~g~~~~~F~~Y~p~~pg~i~~r~~g~l 215 (332)
T 3e3x_A 138 HQGGIMENIGLRXGELXDMAPDGKGRVRMDFIMPSRGL-IGFQTEFMTLTSGSGLLYHTFDHYGPHXGGNIGQRVNGVL 215 (332)
T ss_dssp GHHHHHHHHHHTTCEEEEEEECSSSEEEEEEEEEHHHH-TTHHHHHHHHTTTCCEEEEEEEEEEECCCCSCSCCCCCEE
T ss_pred HHHHHHHHHHhhcccccCceECCCCeEEEEEEEChHHh-hhHHHHhhhhCCCcEEEEEEecCceEcCCCccccccCceE
Confidence 99999999999999999999976689999999999999 8999999999999999999999999973233444555543
No 14
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.97 E-value=1.9e-30 Score=285.36 Aligned_cols=239 Identities=22% Similarity=0.308 Sum_probs=194.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCcccccc----------------ccccccccccccccceeeeeeEEEEEEEe
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREM----------------KEQFLDNMDLERERGITIKLQAARMRYVF 146 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~----------------~~~~~d~~~~e~e~giTi~~~~~~~~~~~ 146 (646)
+..+||+++||+|+|||||+++|++.++.+..... -.+++|..+.|+++|+|++.....+.+.
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~- 93 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE- 93 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC-
Confidence 45689999999999999999999998887765431 1457899999999999999887776655
Q ss_pred cCCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCcc-------HhhHHHHHHHHHcCCC-eEEEEeccCCCCC
Q 043429 147 ENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVE-------AQTLANVYLALENNLE-IIPVLNKIDLPGA 218 (646)
Q Consensus 147 ~~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~-------~qt~~~~~~~~~~~~p-iIvViNKiDl~~~ 218 (646)
++.++|||||||++|...+..+++.+|++|||||+++|.. .|+.+++..+...++| +++|+||+|+...
T Consensus 94 ---~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 94 ---KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTV 170 (439)
T ss_pred ---CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCccc
Confidence 7899999999999999999999999999999999999976 6999999999999999 9999999999654
Q ss_pred Cc-----hHHHHHHHH---HhCCC---cccccccccccccchhHHHH-----------HHHHhCCCCCCCCCCCceEEEE
Q 043429 219 EP-----SRVAREIEE---VIGLD---CTNAILCSAKEGIGINEILN-----------AIVKRIPPPSNTAGCPFRALIF 276 (646)
Q Consensus 219 ~~-----~~~~~el~~---~l~~~---~~~i~~vSAk~g~GV~eLl~-----------~I~~~ip~P~~~~~~pl~~~vf 276 (646)
++ ++..+++.+ .+++. ..+++++||++|.|++++++ .+++.+|+|....+.|+++.|.
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v~ 250 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIV 250 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccccccccCchHHHHHHHhCCCCccCCCCCeEEEEE
Confidence 32 233334433 34553 34799999999999998533 4556788888888999999999
Q ss_pred EEEeecc---------------ceEEecCCCceEEc--------------cce-eeEEEeecccccccccCCeeeecCcc
Q 043429 277 DRIIMLM---------------KLECYPPIKCKWKN--------------FKQ-VGYLSASIRSVADARVGDTITHFNRK 326 (646)
Q Consensus 277 ~~~~d~~---------------~~i~~~~~~~~~~v--------------aG~-Vg~i~~~i~~~~~~~~GDtl~~~~~~ 326 (646)
+++.+.. +.|.+++.+...+| ||| |+..+.|+ +..+++.||++++.+++
T Consensus 251 ~~~~~~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi-~~~~i~rG~vl~~~~~~ 329 (439)
T 3j2k_7 251 DKYKDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENLKIRLKGI-EEEEILPGFILCDPSNL 329 (439)
T ss_pred EEEcCCCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEECCeEcCEecCCCcceEEEecc-chhhcCCcEEecCCCCC
Confidence 8866432 78889998887766 898 66656665 45789999999987654
No 15
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.97 E-value=5.1e-30 Score=281.73 Aligned_cols=241 Identities=22% Similarity=0.291 Sum_probs=183.6
Q ss_pred cCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccc------------------cccccccccccccccceeeeeeEE
Q 043429 79 KVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE------------------MKEQFLDNMDLERERGITIKLQAA 140 (646)
Q Consensus 79 ~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~------------------~~~~~~d~~~~e~e~giTi~~~~~ 140 (646)
....+..+||+++||+|||||||+++|++.++.+.... ...+.+|.++.|+++|+|++....
T Consensus 18 ~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~ 97 (434)
T 1zun_B 18 QHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYR 97 (434)
T ss_dssp STTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEE
T ss_pred hcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeee
Confidence 33445568999999999999999999998765443221 012457888999999999997665
Q ss_pred EEEEEecCCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCC
Q 043429 141 RMRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPGAE 219 (646)
Q Consensus 141 ~~~~~~~~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~ 219 (646)
.+.+. +..++|||||||++|...+.++++.+|++|+|+|++++...|+.+++..+...++| +++|+||+|+.+.+
T Consensus 98 ~~~~~----~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~ 173 (434)
T 1zun_B 98 YFSTA----KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFD 173 (434)
T ss_dssp EEECS----SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSC
T ss_pred EeecC----CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCccc
Confidence 54443 78899999999999999999999999999999999999999999988888888885 99999999998754
Q ss_pred ch---HHHHHHHHH---hC--CCcccccccccccccchhH------------HHHHHHHhCCCCCCCCCCCceEEEEEEE
Q 043429 220 PS---RVAREIEEV---IG--LDCTNAILCSAKEGIGINE------------ILNAIVKRIPPPSNTAGCPFRALIFDRI 279 (646)
Q Consensus 220 ~~---~~~~el~~~---l~--~~~~~i~~vSAk~g~GV~e------------Ll~~I~~~ip~P~~~~~~pl~~~vf~~~ 279 (646)
.+ ...+++.+. ++ ....+++++||++|.|+++ |++ +++.+|+|..+.+.|+++.|.+++
T Consensus 174 ~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~-~l~~i~~~~~~~~~~~~~~v~~v~ 252 (434)
T 1zun_B 174 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLME-ILETVEIASDRNYTDLRFPVQYVN 252 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTH-HHHHSCCTTCCCSSSCEEECCEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccccCccccCchHHH-HHhcCCCcccCCCCCcEEEEEEEe
Confidence 32 233444443 34 3346799999999999997 444 567788888888899999998775
Q ss_pred eecc-----------------ceEEecCCCceEEc--------------cceeeEEEeecccccccccCCeeeecCcc
Q 043429 280 IMLM-----------------KLECYPPIKCKWKN--------------FKQVGYLSASIRSVADARVGDTITHFNRK 326 (646)
Q Consensus 280 ~d~~-----------------~~i~~~~~~~~~~v--------------aG~Vg~i~~~i~~~~~~~~GDtl~~~~~~ 326 (646)
...+ |+|.++++++..+| |||...+ ++++..+++.||+|+..+++
T Consensus 253 ~~~~~~~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~--~l~~~~~i~~G~~l~~~~~~ 328 (434)
T 1zun_B 253 RPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGELEQAGPGQAVTL--TMEDEIDISRGDLLVHADNV 328 (434)
T ss_dssp CSSSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETTEEESEECTTCEEEE--EESSCCCCCTTCEEEETTSC
T ss_pred ccCCCceEEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcCcceeEecCCCEEEE--EeCCccccCCccEEECCCCC
Confidence 4322 88899998887776 9996443 34455689999999987765
No 16
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.7e-30 Score=295.17 Aligned_cols=238 Identities=24% Similarity=0.340 Sum_probs=160.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCcccccc----------------ccccccccccccccceeeeeeEEEEEEE
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREM----------------KEQFLDNMDLERERGITIKLQAARMRYV 145 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~----------------~~~~~d~~~~e~e~giTi~~~~~~~~~~ 145 (646)
.+.++||+|+||+|||||||+++|++.++.+..... ..+++|....|+++|+|++.....+.+.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 456789999999999999999999987776654321 1568899999999999999988777665
Q ss_pred ecCCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCc-------cHhhHHHHHHHHHcCCC-eEEEEeccCCCC
Q 043429 146 FENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV-------EAQTLANVYLALENNLE-IIPVLNKIDLPG 217 (646)
Q Consensus 146 ~~~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~-------~~qt~~~~~~~~~~~~p-iIvViNKiDl~~ 217 (646)
++.++|||||||.+|...+..+++.+|++|||||+++|. ..||..++..+...++| +|+|+||+|+.+
T Consensus 254 ----~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 ----KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS 329 (592)
T ss_dssp ---------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGT
T ss_pred ----CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccccc
Confidence 689999999999999999999999999999999999864 88999999999999998 999999999987
Q ss_pred CCc---hHHHHHHHHHh----CCC--cccccccccccccchh--------------HHHHHHHHhCCCCCCCCCCCceEE
Q 043429 218 AEP---SRVAREIEEVI----GLD--CTNAILCSAKEGIGIN--------------EILNAIVKRIPPPSNTAGCPFRAL 274 (646)
Q Consensus 218 ~~~---~~~~~el~~~l----~~~--~~~i~~vSAk~g~GV~--------------eLl~~I~~~ip~P~~~~~~pl~~~ 274 (646)
++. ..+.+++.+.+ ++. ..+++++||++|.||. .|++.|...+| |....+.||++.
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p-p~~~~~~p~r~~ 408 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP-PEKPYRKPLRLS 408 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC-CSCTTTSCCEEE
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc-ccccccccchhe
Confidence 543 33456666665 443 2368999999999998 79999877666 667788999999
Q ss_pred EEEEEeecc-----------------ceEEecCCCceEEc---------------cce-eeEEEeecccccccccCCeee
Q 043429 275 IFDRIIMLM-----------------KLECYPPIKCKWKN---------------FKQ-VGYLSASIRSVADARVGDTIT 321 (646)
Q Consensus 275 vf~~~~d~~-----------------~~i~~~~~~~~~~v---------------aG~-Vg~i~~~i~~~~~~~~GDtl~ 321 (646)
|.+++.. + ++|.+++++...+| ||| ||+.+.|+ +..+++.||+|+
T Consensus 409 v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i-~~~~i~rG~vl~ 486 (592)
T 3mca_A 409 IDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADI-EVNQLRPGDILS 486 (592)
T ss_dssp EEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEECSSSCSCCEEETTCEEEEEESSS-CGGGCCTTCEEE
T ss_pred eeEEEec-CCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEEcCccCcceecCCCEEEEEEccc-cccccceEEEec
Confidence 9998887 5 78888888876655 788 55556666 467899999999
Q ss_pred ecCcc
Q 043429 322 HFNRK 326 (646)
Q Consensus 322 ~~~~~ 326 (646)
+.+++
T Consensus 487 ~~~~~ 491 (592)
T 3mca_A 487 NYENP 491 (592)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 87654
No 17
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.96 E-value=2e-29 Score=274.64 Aligned_cols=236 Identities=26% Similarity=0.300 Sum_probs=186.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCcc--ccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQ--KREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH 161 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~--~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~ 161 (646)
..+||+++||+|||||||+++|+....... ........+|....|+++|+|++.....+.+ .+..++|||||||
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~----~~~~~~iiDtpG~ 85 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET----AKRHYSHVDCPGH 85 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC----SSCEEEEEECCCS
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc----CCeEEEEEECCCh
Confidence 457999999999999999999987311100 0001123578888899999999986544433 3689999999999
Q ss_pred ccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCC--chHHHHHHHH---HhCCC-
Q 043429 162 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPGAE--PSRVAREIEE---VIGLD- 234 (646)
Q Consensus 162 ~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~--~~~~~~el~~---~l~~~- 234 (646)
++|...+.++++.+|++|+|+|++++...|+.+.|..+...++| +++|+||+|+.... .+...+++.+ .+++.
T Consensus 86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (405)
T 2c78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG 165 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999888888999 88999999997521 1222233333 34442
Q ss_pred -cccccccccccccc------------------hhHHHHHHHHhCCCCCCCCCCCceEEEEEEEeecc------------
Q 043429 235 -CTNAILCSAKEGIG------------------INEILNAIVKRIPPPSNTAGCPFRALIFDRIIMLM------------ 283 (646)
Q Consensus 235 -~~~i~~vSAk~g~G------------------V~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~~d~~------------ 283 (646)
..+++++||++|.| +++|+++|.+.+|+|..+.+.|+++.|.+++++++
T Consensus 166 ~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G 245 (405)
T 2c78_A 166 DEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERG 245 (405)
T ss_dssp TTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSCCEEECCEEEEETTTEEEEEEECCBS
T ss_pred cCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCCcEEEEEEEEEcCCCceEEEEEEecc
Confidence 35799999999998 89999999999999988889999999999999887
Q ss_pred -----ceEEecCCC---ceEEc--------------cce-eeEEEeecccccccccCCeeeecC
Q 043429 284 -----KLECYPPIK---CKWKN--------------FKQ-VGYLSASIRSVADARVGDTITHFN 324 (646)
Q Consensus 284 -----~~i~~~~~~---~~~~v--------------aG~-Vg~i~~~i~~~~~~~~GDtl~~~~ 324 (646)
+.|.+++.+ ....| ||| |++.+.|+ +..+++.||+|++.+
T Consensus 246 ~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~-~~~~i~~G~~l~~~~ 308 (405)
T 2c78_A 246 KVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGV-SREEVERGQVLAKPG 308 (405)
T ss_dssp EEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEESSC-CTTTCCTTCEEESTT
T ss_pred cccCCCEEEEeCCCCCeeeEEEEEEEECCcccCEEcCCCEEEEEECCC-cHhhcCceEEEEcCC
Confidence 788888876 34444 999 66666666 468999999999754
No 18
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.96 E-value=1.6e-29 Score=277.89 Aligned_cols=238 Identities=28% Similarity=0.432 Sum_probs=179.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccc----------------cccccccccccccceeeeeeEEEEEEEe
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMK----------------EQFLDNMDLERERGITIKLQAARMRYVF 146 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~----------------~~~~d~~~~e~e~giTi~~~~~~~~~~~ 146 (646)
+..+||+++||+|||||||+++|++.++.+...... .+++|..+.|+++|+|++.....+.+.
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~- 82 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK- 82 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS-
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC-
Confidence 356899999999999999999999977666543210 256899999999999999876655443
Q ss_pred cCCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCC-------ccHhhHHHHHHHHHcCCC-eEEEEeccCCCCC
Q 043429 147 ENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG-------VEAQTLANVYLALENNLE-IIPVLNKIDLPGA 218 (646)
Q Consensus 147 ~~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g-------~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~ 218 (646)
++.++|||||||.+|..++.++++.+|++|+|||++++ ...|+.+++..+...++| +++|+||+|+.++
T Consensus 83 ---~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 83 ---KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp ---SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred ---CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence 78999999999999999999999999999999999998 677899998888888875 8999999999874
Q ss_pred Cc-----hHHHHHHHHH---hCCCc--ccccccccccccchh------------HHHHHHHHhCCCCCCCCCCCceEEEE
Q 043429 219 EP-----SRVAREIEEV---IGLDC--TNAILCSAKEGIGIN------------EILNAIVKRIPPPSNTAGCPFRALIF 276 (646)
Q Consensus 219 ~~-----~~~~~el~~~---l~~~~--~~i~~vSAk~g~GV~------------eLl~~I~~~ip~P~~~~~~pl~~~vf 276 (646)
+. +...+++.+. +++.. .+++++||++|.|+. .|+++| +.+++|....+.|+++.|.
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l-~~~~~p~~~~~~~~~~~v~ 238 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYL-DQLELPPKPVDKPLRIPIQ 238 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHH-TTCCCCCCGGGSCCBEEEE
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccccccccccchhHHHHH-hccCCCCCCCCCCeEEEEE
Confidence 31 2334444444 35432 579999999999997 577775 4567777777889999999
Q ss_pred EEEeecc-----------------ceEEecCCCceEEc--------------cce-eeEEEeecccccccccCCeeeecC
Q 043429 277 DRIIMLM-----------------KLECYPPIKCKWKN--------------FKQ-VGYLSASIRSVADARVGDTITHFN 324 (646)
Q Consensus 277 ~~~~d~~-----------------~~i~~~~~~~~~~v--------------aG~-Vg~i~~~i~~~~~~~~GDtl~~~~ 324 (646)
++++.++ +.|.+++.+...+| ||| |++.+.|+ +..++++||+|++.+
T Consensus 239 ~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~-~~~~i~~Gd~l~~~~ 317 (435)
T 1jny_A 239 DVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGV-EKKDIKRGDVVGHPN 317 (435)
T ss_dssp EEEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEETTEEESEECTTCEEEEEEESS-CGGGCCTTCEEECTT
T ss_pred EEEEeCCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEECCcEEeEEcCCCEEEEEEecC-CHHHcCCccEecCCC
Confidence 9888876 78888888777666 999 55555665 467899999999865
Q ss_pred cc
Q 043429 325 RK 326 (646)
Q Consensus 325 ~~ 326 (646)
++
T Consensus 318 ~~ 319 (435)
T 1jny_A 318 NP 319 (435)
T ss_dssp SC
T ss_pred CC
Confidence 33
No 19
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.96 E-value=3.8e-29 Score=271.70 Aligned_cols=234 Identities=26% Similarity=0.297 Sum_probs=184.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccc-cccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQK-REMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~-~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
.||+++||+|||||||+++|+........ .....+.+|....|+++|+|++.....+. ..++.++|||||||++|
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~----~~~~~~~iiDtpG~~~f 79 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS----TAARHYAHTDCPGHADY 79 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEE----CSSCEEEEEECSSHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEec----cCCeEEEEEECCChHHH
Confidence 68999999999999999999874211000 00112346788889999999998654433 34789999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCC--chHHHHHHHH---HhCCC--cc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPGAE--PSRVAREIEE---VIGLD--CT 236 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~--~~~~~~el~~---~l~~~--~~ 236 (646)
...+.++++.+|++|+|||++++...|+.++|..+...++| +++|+||+|+.+.. .+...+++.+ .++++ ..
T Consensus 80 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 159 (397)
T 1d2e_A 80 VKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEET 159 (397)
T ss_dssp HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTS
T ss_pred HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccC
Confidence 99999999999999999999999999999999888888999 68999999997521 1222233333 34543 34
Q ss_pred cccccccccccc----------hhHHHHHHHHhCCCCCCCCCCCceEEEEEEEeecc-----------------ceEEec
Q 043429 237 NAILCSAKEGIG----------INEILNAIVKRIPPPSNTAGCPFRALIFDRIIMLM-----------------KLECYP 289 (646)
Q Consensus 237 ~i~~vSAk~g~G----------V~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~~d~~-----------------~~i~~~ 289 (646)
+++++||++|.| +++|+++|.+.+|+|..+.+.|+++.|++++++++ ++|.++
T Consensus 160 ~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~ 239 (397)
T 1d2e_A 160 PIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFL 239 (397)
T ss_dssp CEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEE
T ss_pred cEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceEeCCCEEEEe
Confidence 799999999874 99999999999999998889999999999999887 677777
Q ss_pred CCC--ceEEc--------------cce-eeEEEeecccccccccCCeeeecC
Q 043429 290 PIK--CKWKN--------------FKQ-VGYLSASIRSVADARVGDTITHFN 324 (646)
Q Consensus 290 ~~~--~~~~v--------------aG~-Vg~i~~~i~~~~~~~~GDtl~~~~ 324 (646)
+.+ ...+| ||| ||+.+.|+ +..+++.||+|++.+
T Consensus 240 ~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~i-~~~~i~~G~~l~~~~ 290 (397)
T 1d2e_A 240 GHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGL-KREDLRRGLVMAKPG 290 (397)
T ss_dssp ETTEEEEEEEEEEEETTEEESEEETTCEEEEEESSC-CGGGCCTTCEEESTT
T ss_pred CCCCCeEEEEEEEEECCcccCEecCCCceEEEeccc-chhccCceeEEeCCC
Confidence 654 34444 999 66666666 468899999999754
No 20
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.96 E-value=5.5e-30 Score=283.76 Aligned_cols=240 Identities=23% Similarity=0.304 Sum_probs=160.8
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccc----------------cccccccccccccccceeeeeeEEEEEE
Q 043429 81 PASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE----------------MKEQFLDNMDLERERGITIKLQAARMRY 144 (646)
Q Consensus 81 ~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~----------------~~~~~~d~~~~e~e~giTi~~~~~~~~~ 144 (646)
..+..+||+++||+|||||||+++|++.++.+.... ...+++|..+.|+++|+|++.....+.+
T Consensus 39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~ 118 (467)
T 1r5b_A 39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET 118 (467)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec
Confidence 345578999999999999999999998877764321 0145688999999999999987665554
Q ss_pred EecCCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCc-------cHhhHHHHHHHHHcCCC-eEEEEeccCCC
Q 043429 145 VFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV-------EAQTLANVYLALENNLE-IIPVLNKIDLP 216 (646)
Q Consensus 145 ~~~~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~-------~~qt~~~~~~~~~~~~p-iIvViNKiDl~ 216 (646)
. +..++|||||||.+|..++.++++.+|++|||||+++|. ..|+.+++..+...++| +++|+||+|+.
T Consensus 119 ~----~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 119 E----HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEP 194 (467)
T ss_dssp S----SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTST
T ss_pred C----CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCC
Confidence 4 789999999999999999999999999999999999986 36899999888889998 99999999997
Q ss_pred CCCc-----hHHHHHHHHH---h-CCC---cccccccccccccchhHHH-------------HHHHHhCCCCCCCCCCCc
Q 043429 217 GAEP-----SRVAREIEEV---I-GLD---CTNAILCSAKEGIGINEIL-------------NAIVKRIPPPSNTAGCPF 271 (646)
Q Consensus 217 ~~~~-----~~~~~el~~~---l-~~~---~~~i~~vSAk~g~GV~eLl-------------~~I~~~ip~P~~~~~~pl 271 (646)
..++ +...+++.+. + ++. ..+++++||++|.|+++++ ..+++.+|+|..+.+.||
T Consensus 195 ~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~ 274 (467)
T 1r5b_A 195 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAPF 274 (467)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHHCCCCHHHHTSCC
T ss_pred CccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHHHhCCCCcCCCCCCc
Confidence 6432 2233333333 3 655 4579999999999998642 244567888887788999
Q ss_pred eEEEEEEEeecc---------------ceEEecCCCceEEc---------------cce-eeEEEeecccccccccCCee
Q 043429 272 RALIFDRIIMLM---------------KLECYPPIKCKWKN---------------FKQ-VGYLSASIRSVADARVGDTI 320 (646)
Q Consensus 272 ~~~vf~~~~d~~---------------~~i~~~~~~~~~~v---------------aG~-Vg~i~~~i~~~~~~~~GDtl 320 (646)
++.|.+++.+.. +.|.+++++...+| ||| |++.+.| +..+++.||+|
T Consensus 275 ~~~v~~~~~~~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g--~~~~i~rG~vl 352 (467)
T 1r5b_A 275 IMPIASKYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRG--DDSDVQTGYVL 352 (467)
T ss_dssp EEECCEEEESSSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECTTCCEESEEETTCEEEEEEES--CCTTCCTTCEE
T ss_pred EEEEEEEEeCCCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEeccCCcEeeEEcCCCEEEEEEec--cHhhCCceEEE
Confidence 999988866543 77788887766555 898 6655555 57899999999
Q ss_pred eecCcc
Q 043429 321 THFNRK 326 (646)
Q Consensus 321 ~~~~~~ 326 (646)
++.+++
T Consensus 353 ~~~~~~ 358 (467)
T 1r5b_A 353 TSTKNP 358 (467)
T ss_dssp ECSSSC
T ss_pred eCCCCC
Confidence 986543
No 21
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.96 E-value=2.8e-28 Score=269.46 Aligned_cols=235 Identities=26% Similarity=0.376 Sum_probs=188.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCcccccc----------------ccccccccccccccceeeeeeEEEEEEEecC
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREM----------------KEQFLDNMDLERERGITIKLQAARMRYVFEN 148 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~----------------~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~ 148 (646)
..+|+++||+|||||||+++|++.++.+..+.. -.+++|..+.|+++|+|++.....+.+.
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~--- 83 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP--- 83 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS---
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC---
Confidence 479999999999999999999987665543210 1245688888999999999887655443
Q ss_pred CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccH-------hhHHHHHHHHHcCCC-eEEEEeccCCCCCCc
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEA-------QTLANVYLALENNLE-IIPVLNKIDLPGAEP 220 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~-------qt~~~~~~~~~~~~p-iIvViNKiDl~~~~~ 220 (646)
++.++|||||||.+|...+..+++.+|++|||||++++... |+.+++..+...++| +++|+||+|+.+.+.
T Consensus 84 -~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~ 162 (458)
T 1f60_A 84 -KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDE 162 (458)
T ss_dssp -SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCH
T ss_pred -CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCH
Confidence 78999999999999999999999999999999999998655 888888888888987 999999999975432
Q ss_pred ---hHHHHHHH---HHhCCC--cccccccccccccchh------------------------HHHHHHHHhCCCCCCCCC
Q 043429 221 ---SRVAREIE---EVIGLD--CTNAILCSAKEGIGIN------------------------EILNAIVKRIPPPSNTAG 268 (646)
Q Consensus 221 ---~~~~~el~---~~l~~~--~~~i~~vSAk~g~GV~------------------------eLl~~I~~~ip~P~~~~~ 268 (646)
+...+++. ..+++. ..+++++||++|.|++ .|+++| +.+++|....+
T Consensus 163 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l-~~~~~p~~~~~ 241 (458)
T 1f60_A 163 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAI-DAIEQPSRPTD 241 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHH-HTSCCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHh-hccCCCcccCC
Confidence 23334444 335553 2579999999999986 467774 56788888889
Q ss_pred CCceEEEEEEEeecc-----------------ceEEecCCCceEEc--------------cce-eeEEEeeccccccccc
Q 043429 269 CPFRALIFDRIIMLM-----------------KLECYPPIKCKWKN--------------FKQ-VGYLSASIRSVADARV 316 (646)
Q Consensus 269 ~pl~~~vf~~~~d~~-----------------~~i~~~~~~~~~~v--------------aG~-Vg~i~~~i~~~~~~~~ 316 (646)
.|+++.|.+++.+++ ++|.+++.+...+| ||| |++.+.|+ +..+++.
T Consensus 242 ~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~i~l~gi-~~~~i~r 320 (458)
T 1f60_A 242 KPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNV-SVKEIRR 320 (458)
T ss_dssp SCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEETTEECSCBCTTCEEEEEESSC-CTTTSCT
T ss_pred CCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEECCeEEEEEcCCCEEEEEEcCC-cccccCc
Confidence 999999999998765 78888888776666 898 66666666 4578999
Q ss_pred CCeeeecCc
Q 043429 317 GDTITHFNR 325 (646)
Q Consensus 317 GDtl~~~~~ 325 (646)
||+|+..++
T Consensus 321 G~vl~~~~~ 329 (458)
T 1f60_A 321 GNVCGDAKN 329 (458)
T ss_dssp TCEEEETTS
T ss_pred eeEEecCCC
Confidence 999998754
No 22
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.95 E-value=3.3e-29 Score=283.79 Aligned_cols=307 Identities=20% Similarity=0.207 Sum_probs=207.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEe--------------cCCC
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVF--------------ENEP 150 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~--------------~~~~ 150 (646)
.++|+|+||+|||||||+++|++.... + ...+|+|.........+.. +...
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~-----------~----~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~ 69 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVA-----------S----REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETL 69 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHS-----------C----C----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTC
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCc-----------c----ccCCceecccCeEEEeechhhhhcccccccccccccc
Confidence 468999999999999999999873211 1 0113555544333333210 0012
Q ss_pred eEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCC-C----------
Q 043429 151 FCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGA-E---------- 219 (646)
Q Consensus 151 ~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~-~---------- 219 (646)
..++|||||||.+|..++.++++.||++|+|+|+++|++.||...|..+...++|+++|+||+|+... .
T Consensus 70 ~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~ 149 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMET 149 (594)
T ss_dssp CEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHH
Confidence 35999999999999999999999999999999999999999999999999999999999999998642 1
Q ss_pred ----chHHHH-------HHHHHh---CCC------------cccccccccccccchhHHHHHHHHhCCCC-----CCCCC
Q 043429 220 ----PSRVAR-------EIEEVI---GLD------------CTNAILCSAKEGIGINEILNAIVKRIPPP-----SNTAG 268 (646)
Q Consensus 220 ----~~~~~~-------el~~~l---~~~------------~~~i~~vSAk~g~GV~eLl~~I~~~ip~P-----~~~~~ 268 (646)
.+.+.+ ++.+.+ ++. ..+++++||++|.|+++|+++|...+|.| ..+++
T Consensus 150 sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~~l~~~~~ 229 (594)
T 1g7s_A 150 FSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEED 229 (594)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGGGEECTT
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccchhhhccccC
Confidence 111111 122222 332 23799999999999999999999876532 23567
Q ss_pred CCceEEEEEEEeecc-----------------ceEEecCCCceE------------------------Ec------ccee
Q 043429 269 CPFRALIFDRIIMLM-----------------KLECYPPIKCKW------------------------KN------FKQV 301 (646)
Q Consensus 269 ~pl~~~vf~~~~d~~-----------------~~i~~~~~~~~~------------------------~v------aG~V 301 (646)
.|+++.||++++|++ +.|...+.+..+ .+ +|++
T Consensus 230 ~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~ 309 (594)
T 1g7s_A 230 SPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIK 309 (594)
T ss_dssp SBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEE
T ss_pred CCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcE
Confidence 899999999999997 455554443311 12 3444
Q ss_pred eEEEeecccccccccCCeeeecCcccc---C---CCCCcccCCceEEeeeeeCCCCCHHHHHHHHHHHhhc---------
Q 043429 302 GYLSASIRSVADARVGDTITHFNRKAD---N---LLPGYEEATPMVFCGLFPVDADQFPELRDALEKLQLN--------- 366 (646)
Q Consensus 302 g~i~~~i~~~~~~~~GDtl~~~~~~~~---~---~l~~~~~~~p~v~~~i~p~~~~d~~~L~~aL~kL~~~--------- 366 (646)
+. +.++.++.+||||+...++.. + .+.......+.+-..+.+...+..+.|.++|+++..+
T Consensus 310 v~----~~~l~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkad~~gs~eal~~~l~~~~~~v~~~~vg~i 385 (594)
T 1g7s_A 310 IV----APGIDDVMAGSPLRVVTDPEKVREEILSEIEDIKIDTDEAGVVVKADTLGSLEAVVKILRDMYVPIKVADIGDV 385 (594)
T ss_dssp EE----CSSCTTBCTTCEEEECSSHHHHHHHHHHHHHTTSCBCSSSCCEEEESSHHHHHHHHHHHHHTTCCCSEEEESSB
T ss_pred EE----EcccCCCCCCCEEEecCCHHHHHHHHHHHHHhcccccccccEEEEeCCCCCHHHHHHHHHhCCCcEEecccCCC
Confidence 32 235678899999998765410 0 0111112233444556788888999999999999542
Q ss_pred ------CCceE--EEeCCCccccceeEeccchhhHHHHHHHHHHHHcCceEEEecceeEEEE
Q 043429 367 ------DAALK--FEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRV 420 (646)
Q Consensus 367 ------Dpsl~--~~~e~~~~lg~g~r~gflG~lHlei~~erL~~e~~~~v~~t~P~V~Y~e 420 (646)
.++.. .+++.+..||+++|+ +.+ .+++.+++|+++.. .+|+|+-
T Consensus 386 ~~~dv~~a~~~~~~~~~~a~i~~fnv~~------~~~--~~~~a~~~~v~i~~--~~iiy~l 437 (594)
T 1g7s_A 386 SRRDVVNAGIALQEDRVYGAIIAFNVKV------IPS--AAQELKNSDIKLFQ--GNVIYRL 437 (594)
T ss_dssp CHHHHHHHHHHHTTCTTSCEEEEESCCB------CHH--HHHHTSSSSSEEEE--ESCHHHH
T ss_pred CHHHHHHHHhhhccCcCCCEEEEeCCcC------CHH--HHHHHHHcCCeEEE--CCHHHHH
Confidence 11111 223444445554443 555 47788888998876 6788863
No 23
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.95 E-value=2.8e-27 Score=258.01 Aligned_cols=229 Identities=25% Similarity=0.286 Sum_probs=175.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEec---------------
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFE--------------- 147 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~--------------- 147 (646)
+..+||+++||+|||||||+++|+.. ..+....|+++|+|++.......+...
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~ 75 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGV------------WTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYC 75 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTC------------CCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCC------------ccccChhhhcCCcEEEEeeeeeeccccccccccccccccccc
Confidence 44689999999999999999999741 235566788999999888766655321
Q ss_pred CC----CeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCc-cHhhHHHHHHHHHcCC-CeEEEEeccCCCCCCc-
Q 043429 148 NE----PFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV-EAQTLANVYLALENNL-EIIPVLNKIDLPGAEP- 220 (646)
Q Consensus 148 ~~----~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~-~~qt~~~~~~~~~~~~-piIvViNKiDl~~~~~- 220 (646)
+. ...++|||||||.+|..++.+.+..+|++|||||++++. +.||.+++..+...++ |+++|+||+|+.+.+.
T Consensus 76 g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~ 155 (410)
T 1kk1_A 76 GHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKA 155 (410)
T ss_dssp CCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHH
T ss_pred CcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHH
Confidence 11 278999999999999999999999999999999999997 8999998887776665 6999999999976432
Q ss_pred hHHHHHHHHHhC---CCcccccccccccccchhHHHHHHHHhCCCCCCCCCCCceEEEEEEE--------eecc------
Q 043429 221 SRVAREIEEVIG---LDCTNAILCSAKEGIGINEILNAIVKRIPPPSNTAGCPFRALIFDRI--------IMLM------ 283 (646)
Q Consensus 221 ~~~~~el~~~l~---~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~--------~d~~------ 283 (646)
.+..+++.+.+. ....+++++||++|.|+++|+++|.+.+|+|..+.+.|+++.|.+++ +|+|
T Consensus 156 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~ 235 (410)
T 1kk1_A 156 LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLD 235 (410)
T ss_dssp HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCSCCC----CCCCCEEE
T ss_pred HHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCccccCCCcEEEEEEEEeccCCCccccCCceEEEE
Confidence 234456666553 23457999999999999999999999999998888999999998875 3333
Q ss_pred -----------ceEEecCCCc------------eEEc--------------cce-eeEEEe---ecccccccccCCeeee
Q 043429 284 -----------KLECYPPIKC------------KWKN--------------FKQ-VGYLSA---SIRSVADARVGDTITH 322 (646)
Q Consensus 284 -----------~~i~~~~~~~------------~~~v--------------aG~-Vg~i~~---~i~~~~~~~~GDtl~~ 322 (646)
++|.++++++ ...| ||| |+.... ++ ...++..||++++
T Consensus 236 g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~~~~~v~~a~aG~~v~~~~~~~~~~-~~~d~~~G~vl~~ 314 (410)
T 1kk1_A 236 GSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYL-TKGDLMAGNVVGK 314 (410)
T ss_dssp EEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCGGG-TGGGTTTTCEEEC
T ss_pred EEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEEECCeEecEEcCCCEEEEEEecCccc-chhhccceeEEec
Confidence 6777766432 2222 898 555432 22 2368889999987
Q ss_pred cC
Q 043429 323 FN 324 (646)
Q Consensus 323 ~~ 324 (646)
.+
T Consensus 315 ~~ 316 (410)
T 1kk1_A 315 PG 316 (410)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 24
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.95 E-value=5.8e-27 Score=255.41 Aligned_cols=185 Identities=26% Similarity=0.351 Sum_probs=139.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEe-------------c--
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVF-------------E-- 147 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~-------------~-- 147 (646)
+...||+++||+|||||||+++|+.. ..+....|+++|+|++.......+.. +
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~ 73 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGV------------WTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNC 73 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSC------------CCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTS
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCC------------ccccCcccccCCcEEEeccccccccccccccccccccccccc
Confidence 34689999999999999999999641 23556678899999988766554421 1
Q ss_pred CC----CeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCc-cHhhHHHHHHHHHcCC-CeEEEEeccCCCCCCc-
Q 043429 148 NE----PFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV-EAQTLANVYLALENNL-EIIPVLNKIDLPGAEP- 220 (646)
Q Consensus 148 ~~----~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~-~~qt~~~~~~~~~~~~-piIvViNKiDl~~~~~- 220 (646)
+. ...++|||||||++|...+.+.+..+|++|||+|++++. ..||.+++..+...+. |+++|+||+|+...+.
T Consensus 74 g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~ 153 (408)
T 1s0u_A 74 LAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQA 153 (408)
T ss_dssp CCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTT
T ss_pred CcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHH
Confidence 11 278999999999999999999999999999999999997 8899988877766665 6999999999976542
Q ss_pred hHHHHHHHHHhC---CCcccccccccccccchhHHHHHHHHhCCCCCCCCCCCceEEEEEEE
Q 043429 221 SRVAREIEEVIG---LDCTNAILCSAKEGIGINEILNAIVKRIPPPSNTAGCPFRALIFDRI 279 (646)
Q Consensus 221 ~~~~~el~~~l~---~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~ 279 (646)
.+..+++.+.+. ....+++++||++|.|+++|+++|.+.++.|..+.+.|+++.|.+++
T Consensus 154 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~~~~~~~~~~~v~~~f 215 (408)
T 1s0u_A 154 EENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPKRDPDATPRMYVARSF 215 (408)
T ss_dssp TTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEE
T ss_pred HHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcccCCCCeEEEEEEEE
Confidence 344556665543 23457999999999999999999999999998888999999998876
No 25
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.95 E-value=1.7e-27 Score=280.23 Aligned_cols=238 Identities=26% Similarity=0.293 Sum_probs=174.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccc-cccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQK-REMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH 161 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~-~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~ 161 (646)
....||+++||+|||||||+++|+........ .....+.+|..+.|+++|+|++.....+. ..+..++|||||||
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~----~~~~kI~IIDTPGH 369 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYD----TPTRHYAHVDCPGH 369 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEE----CSSCEEEEEECCCH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEc----CCCEEEEEEECCCh
Confidence 45689999999999999999999874210000 00112256778889999999998655443 34789999999999
Q ss_pred ccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCC--chHHHHHHHH---HhCCC-
Q 043429 162 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPGAE--PSRVAREIEE---VIGLD- 234 (646)
Q Consensus 162 ~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~--~~~~~~el~~---~l~~~- 234 (646)
++|...+.++++.+|++|+|||++++...|+.++|..+...++| +|+|+||+|+.+.. .+.+.+++.+ .+++.
T Consensus 370 edF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~ 449 (1289)
T 3avx_A 370 ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG 449 (1289)
T ss_dssp HHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999888888999 78999999997521 1222334433 34542
Q ss_pred -cccccccccccc--------cchhHHHHHHHHhCCCCCCCCCCCceEEEEEEEeecc-----------------ceEEe
Q 043429 235 -CTNAILCSAKEG--------IGINEILNAIVKRIPPPSNTAGCPFRALIFDRIIMLM-----------------KLECY 288 (646)
Q Consensus 235 -~~~i~~vSAk~g--------~GV~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~~d~~-----------------~~i~~ 288 (646)
..+++++||++| .|+++|+++|.+.+|+|..+.+.|+++.|.+++.+++ +.|.+
T Consensus 450 ~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I 529 (1289)
T 3avx_A 450 DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI 529 (1289)
T ss_dssp TTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEE
T ss_pred cceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCccccccceeeeccccccccCCcEEEEEEEeccEEecCCEEEE
Confidence 357999999999 6899999999999999988889999999999998887 77888
Q ss_pred cCCC--ceEEc--------------cce-eeEEEeecccccccccCCeeeecCc
Q 043429 289 PPIK--CKWKN--------------FKQ-VGYLSASIRSVADARVGDTITHFNR 325 (646)
Q Consensus 289 ~~~~--~~~~v--------------aG~-Vg~i~~~i~~~~~~~~GDtl~~~~~ 325 (646)
++.+ ...+| ||| ||+.+.|+ +..++++||+|+..+.
T Consensus 530 ~ps~~~~~~kVksI~~~~~~v~eA~AGd~Vgl~L~GI-~~~dI~RGdVL~~~~~ 582 (1289)
T 3avx_A 530 VGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGI-KREEIERGQVLAKPGT 582 (1289)
T ss_dssp ESSSSCEEEEEEEEECSSCEESEEETTCEEEEEESSC-CGGGCCTTCEEESTTS
T ss_pred ecCCCceeEEEEEEeecCceeeEEecCCcceeEeeec-chhcCCcccEEecCCC
Confidence 8876 34444 999 67776676 4689999999997653
No 26
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.95 E-value=5.9e-27 Score=260.71 Aligned_cols=237 Identities=22% Similarity=0.285 Sum_probs=171.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCcccccc----------------ccccccccccccccceeeeeeEEEEEEEec
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREM----------------KEQFLDNMDLERERGITIKLQAARMRYVFE 147 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~----------------~~~~~d~~~~e~e~giTi~~~~~~~~~~~~ 147 (646)
...||+++|++|+|||||+++|++.++.+..... ..+++|....|+++|+|++.....+.+.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-- 109 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH-- 109 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC--
Confidence 3579999999999999999999998776654321 2467899999999999999887766544
Q ss_pred CCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCC-------ccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCC
Q 043429 148 NEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG-------VEAQTLANVYLALENNLE-IIPVLNKIDLPGAE 219 (646)
Q Consensus 148 ~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g-------~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~ 219 (646)
++.++|||||||++|...+..+++.+|++|+|||++++ ...|+.+.+..+...+++ +++|+||+|+.+.+
T Consensus 110 --~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 110 --RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp --SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTC
T ss_pred --CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccch
Confidence 78999999999999999999999999999999999998 557888888888888865 99999999998744
Q ss_pred c---hHHHHHHHHH---hCCC--cccccccccccccchhH------------------HHHHHHHhCCC--CCCCCCCCc
Q 043429 220 P---SRVAREIEEV---IGLD--CTNAILCSAKEGIGINE------------------ILNAIVKRIPP--PSNTAGCPF 271 (646)
Q Consensus 220 ~---~~~~~el~~~---l~~~--~~~i~~vSAk~g~GV~e------------------Ll~~I~~~ip~--P~~~~~~pl 271 (646)
. ++..+++.+. ++.. ..+++++||++|.|+++ +++.+...+|+ |....+.|+
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~ 267 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPF 267 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCce
Confidence 2 2333344333 3543 34789999999999974 34445545555 667788999
Q ss_pred eEEEEEEEeec-----c---------------ceEEecCCCceEEc----------------------cceeeEE-Eeec
Q 043429 272 RALIFDRIIML-----M---------------KLECYPPIKCKWKN----------------------FKQVGYL-SASI 308 (646)
Q Consensus 272 ~~~vf~~~~d~-----~---------------~~i~~~~~~~~~~v----------------------aG~Vg~i-~~~i 308 (646)
++.|.+++..+ + +.|.+++.+...+| |||.+.+ +.++
T Consensus 268 r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~~ 347 (483)
T 3p26_A 268 LFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKA 347 (483)
T ss_dssp EEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC-----CCEESCEETTCEEEEEEESC
T ss_pred EEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccccccccccccEECCCCEEEEEEEec
Confidence 99999887754 1 67778877655433 7885544 3332
Q ss_pred ccccccccCCeeeecCc
Q 043429 309 RSVADARVGDTITHFNR 325 (646)
Q Consensus 309 ~~~~~~~~GDtl~~~~~ 325 (646)
+..+++.||+|++.++
T Consensus 348 -~~~di~rG~vl~~~~~ 363 (483)
T 3p26_A 348 -YPEDIQNGDLAASVDY 363 (483)
T ss_dssp -CGGGCCTTCEEECTTC
T ss_pred -ccccCCceEEEEcCCC
Confidence 4689999999998765
No 27
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.95 E-value=1.2e-27 Score=265.80 Aligned_cols=224 Identities=27% Similarity=0.371 Sum_probs=165.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++||+|||||||+++|+... ....+|....|+++|+|++.....+.+. ++.++|||||||++|
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~--------~~~~~d~~~~e~~~GiTi~~~~~~~~~~----~~~i~iiDtPGh~~~ 86 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIA--------STSAHDKLPESQKRGITIDIGFSAFKLE----NYRITLVDAPGHADL 86 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC----------------------------CCCEEEET----TEEEEECCCSSHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHCCC--------cccccccccccccCccEEecceEEEEEC----CEEEEEEECCChHHH
Confidence 4699999999999999999997632 1234677788999999999887777664 689999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC-chHHHHHHHHHh----CCCccccc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE-PSRVAREIEEVI----GLDCTNAI 239 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~-~~~~~~el~~~l----~~~~~~i~ 239 (646)
...+.++++.+|++|+|+|+++|...|+.+++..+...++|+++|+||+|+.+.. .+...+++.+.+ ++...+++
T Consensus 87 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii 166 (482)
T 1wb1_A 87 IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII 166 (482)
T ss_dssp HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred HHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEE
Confidence 9999999999999999999999999999999998888999999999999997532 334445555543 44456899
Q ss_pred ccccccccchhHHHHHHHHhCCCC--CCCCCCCceEEEEEEEeecc-----------------ceEEecCCCceEEc---
Q 043429 240 LCSAKEGIGINEILNAIVKRIPPP--SNTAGCPFRALIFDRIIMLM-----------------KLECYPPIKCKWKN--- 297 (646)
Q Consensus 240 ~vSAk~g~GV~eLl~~I~~~ip~P--~~~~~~pl~~~vf~~~~d~~-----------------~~i~~~~~~~~~~v--- 297 (646)
++||++|.|+++|+++|.+.++.| ..+.+.|+++.|-+++..++ |.+.+++.+...+|
T Consensus 167 ~vSA~~g~gI~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i 246 (482)
T 1wb1_A 167 PISAKTGFGVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSI 246 (482)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTTCCCEEECCB
T ss_pred EEECcCCCCHHHHHHHHHHhhcCccccccccccccccceeEEEecCCceEEEEEEEEeEEeeCCEEEECCCCcEEEEeEE
Confidence 999999999999999999987666 66777898877655544333 67777887766666
Q ss_pred -----------cce-eeEEEeecccccccccCCeee
Q 043429 298 -----------FKQ-VGYLSASIRSVADARVGDTIT 321 (646)
Q Consensus 298 -----------aG~-Vg~i~~~i~~~~~~~~GDtl~ 321 (646)
+|| ||+.+.++ +..+++.||+|+
T Consensus 247 ~~~~~~v~~a~~G~~v~~~l~~~-~~~~i~~Gdvl~ 281 (482)
T 1wb1_A 247 QYFKESVMEAKAGDRVGMAIQGV-DAKQIYRGXILT 281 (482)
T ss_dssp CGGGSCBCCCCSSCCCCEECSSC-CSSCCCSSCBCC
T ss_pred EECCeEeeEecCCCEEEEEecCC-CHhhccccceEe
Confidence 888 55555555 456889999994
No 28
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.94 E-value=6e-27 Score=251.61 Aligned_cols=207 Identities=15% Similarity=0.122 Sum_probs=167.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
+||+++||+|+|||||+++|+ ++|+|++.....+.+. ++.++|||||||.+|.
T Consensus 22 ~~i~iiG~~d~GKSTL~~~L~-----------------------~~giTi~~~~~~~~~~----~~~i~iiDtPGh~~f~ 74 (370)
T 2elf_A 22 ANVAIIGTEKSGRTSLAANLG-----------------------KKGTSSDITMYNNDKE----GRNMVFVDAHSYPKTL 74 (370)
T ss_dssp EEEEEEESTTSSHHHHHHTTS-----------------------EEEEESSSEEEEECSS----SSEEEEEECTTTTTCH
T ss_pred CEEEEECCCCCCHHHHHHHHH-----------------------hCCEEEEeeEEEEecC----CeEEEEEECCChHHHH
Confidence 399999999999999999984 5788998877654443 7789999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCe-EEEEe-ccCCCCCCc-hHHHHHHHHHhC---CCccccc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEI-IPVLN-KIDLPGAEP-SRVAREIEEVIG---LDCTNAI 239 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~pi-IvViN-KiDl~~~~~-~~~~~el~~~l~---~~~~~i~ 239 (646)
..+.++++.+|++|+||| +.+...|+.+.+..+...++|. ++|+| |+|+ +.+. ++..+++++.+. ....+++
T Consensus 75 ~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii 152 (370)
T 2elf_A 75 KSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECI 152 (370)
T ss_dssp HHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEE
T ss_pred HHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 999999999999999999 9999999999999988899998 99999 9999 4332 334466666653 3345799
Q ss_pred c--ccccc---ccchhHHHHHHHHhCCCCC---CC-CCCCceEEEEEEEeecc-----------------ceEEecCCCc
Q 043429 240 L--CSAKE---GIGINEILNAIVKRIPPPS---NT-AGCPFRALIFDRIIMLM-----------------KLECYPPIKC 293 (646)
Q Consensus 240 ~--vSAk~---g~GV~eLl~~I~~~ip~P~---~~-~~~pl~~~vf~~~~d~~-----------------~~i~~~~~~~ 293 (646)
+ +||++ |.|+++|+++|.+.+|+|. .. ...|+++++.+++..++ +++.+++.+.
T Consensus 153 ~~~~SA~~~~~g~gi~~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~ 232 (370)
T 2elf_A 153 SLNTNKSAKNPFEGVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDR 232 (370)
T ss_dssp ECCCCTTSSSTTTTHHHHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESEEETTCEEEEETTTE
T ss_pred ecccccccCcCCCCHHHHHHHHHhhccccccCCcccccccccccceeEEEcCCCceEEEEEEECCEEeeCCEEEECCCCc
Confidence 9 99999 9999999999999887652 11 34567777777766554 7888888877
Q ss_pred eEEc--------------cce-eeEEEeecccccccccCCeeee
Q 043429 294 KWKN--------------FKQ-VGYLSASIRSVADARVGDTITH 322 (646)
Q Consensus 294 ~~~v--------------aG~-Vg~i~~~i~~~~~~~~GDtl~~ 322 (646)
..+| ||| |++.+.|+ +..++++||+|+.
T Consensus 233 ~~~V~~i~~~~~~v~~a~aGd~v~i~l~gv-~~~~i~~Gdvl~~ 275 (370)
T 2elf_A 233 DIEIRSIQSHDVDIDSAPAGTRVGMRLKNV-QAKDIERGFIISD 275 (370)
T ss_dssp EEEEEEEEETTEEESEEETTCEEEEEEESC-CGGGCCTTCEEES
T ss_pred EEEEeEEEECCCCccEEcCCCcceEEEecc-CHHHcCCceEEEC
Confidence 6666 999 55655666 5678999999987
No 29
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.94 E-value=5.7e-26 Score=247.12 Aligned_cols=241 Identities=20% Similarity=0.149 Sum_probs=167.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEe-cCCCeEEEEEeCCCCc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVF-ENEPFCLNLIDTPGHV 162 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~-~~~~~~l~liDTPG~~ 162 (646)
...+|+++|++|||||||+++|+........................++++.........+.. ......++|||||||+
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 456999999999999999999986321110000111111111122233333322110000000 0013789999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCc-cHhhHHHHHHHHHcCC-CeEEEEeccCCCCCC-chHHHHHHHHHh---CCCcc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGV-EAQTLANVYLALENNL-EIIPVLNKIDLPGAE-PSRVAREIEEVI---GLDCT 236 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~-~~qt~~~~~~~~~~~~-piIvViNKiDl~~~~-~~~~~~el~~~l---~~~~~ 236 (646)
+|...+..+++.+|++|+|+|++++. ..|+.+++..+...+. |+++|+||+|+.+.+ ..+..+++.+.+ +....
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 166 (403)
T 3sjy_A 87 VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENV 166 (403)
T ss_dssp GGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTC
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCC
Confidence 99999999999999999999999997 8888888877776665 899999999997653 234445565554 23345
Q ss_pred cccccccccccchhHHHHHHHHhCCCCCCCCCCCceEEEEEEEe--------ecc-----------------ceEEecCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIPPPSNTAGCPFRALIFDRII--------MLM-----------------KLECYPPI 291 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip~P~~~~~~pl~~~vf~~~~--------d~~-----------------~~i~~~~~ 291 (646)
+++++||++|.|+++|+++|.+.+++|..+.+.|+++.|.+++. |+| ++|.++++
T Consensus 167 ~ii~vSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~ 246 (403)
T 3sjy_A 167 PIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPG 246 (403)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEE
T ss_pred EEEEEECCCCcChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCC
Confidence 79999999999999999999999999998889999999988763 443 67777776
Q ss_pred Cc------------eEEc--------------cceeeEE-Ee---ecccccccccCCeeeecCc
Q 043429 292 KC------------KWKN--------------FKQVGYL-SA---SIRSVADARVGDTITHFNR 325 (646)
Q Consensus 292 ~~------------~~~v--------------aG~Vg~i-~~---~i~~~~~~~~GDtl~~~~~ 325 (646)
++ ...| |||.+.+ +. ++ ...++..||+++++++
T Consensus 247 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~-~~~d~~~G~vl~~~~~ 309 (403)
T 3sjy_A 247 LRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSL-TKADNLLGSIITLADA 309 (403)
T ss_dssp EEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCHHH-HGGGTTTTCEEEETTC
T ss_pred cccccccccccccccEEEEEEEECCEEcCEEeCCCEEEEEecccccc-chhhhccccEEeCCCC
Confidence 53 2333 8985433 21 22 3468899999998654
No 30
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.93 E-value=2e-27 Score=263.27 Aligned_cols=389 Identities=21% Similarity=0.261 Sum_probs=242.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
+.++|+++||+|||||||+++|+... ......+|+|++.....+.+ .+..++|||||||.+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~---------------v~~~e~~GIT~~i~~~~v~~----~~~~i~~iDTPGhe~ 63 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK---------------VASGEAGGITQHIGAYHVET----ENGMITFLDTPGHAA 63 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH---------------HSBTTBCCCCCCSSCCCCCT----TSSCCCEECCCTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC---------------CccccCCCeeEeEEEEEEEE----CCEEEEEEECCCcHH
Confidence 45799999999999999999998621 11223478887776544433 256899999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHH------HhCCCccc
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEE------VIGLDCTN 237 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~------~l~~~~~~ 237 (646)
|..++.++++.+|++|||||+++|...||.+.|..+...++|+++|+||+|+++++.+++.+++.+ .++ ...+
T Consensus 64 f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~-~~~~ 142 (501)
T 1zo1_I 64 FTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWG-GESQ 142 (501)
T ss_dssp CTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCS-SSCE
T ss_pred HHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhC-CCcc
Confidence 999999999999999999999999999999999999899999999999999987655433332211 111 1247
Q ss_pred ccccccccccchhHHHHHHHHhC--CCCCCCCCCCceEEEEEEEeecc-----------------c---------eEEec
Q 043429 238 AILCSAKEGIGINEILNAIVKRI--PPPSNTAGCPFRALIFDRIIMLM-----------------K---------LECYP 289 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~i--p~P~~~~~~pl~~~vf~~~~d~~-----------------~---------~i~~~ 289 (646)
++++||++|.|+++|+++|.... +.+..+++.|+++.|++++.|++ + +|+.+
T Consensus 143 ~v~vSAktG~gI~eLle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~g~~~~kVr~i 222 (501)
T 1zo1_I 143 FVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAM 222 (501)
T ss_dssp EEECCTTTCTTCTTHHHHTTTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCEEEEEBSSCEEEEE
T ss_pred EEEEeeeeccCcchhhhhhhhhhhhhccccccccccccceEEEEEeCCcEEEEEEEEEeeEEecCCEEEEccceeEEEEE
Confidence 99999999999999999998653 44556678899999999999987 2 33333
Q ss_pred CC--Cc-eEEc-cceeeEEEeecccccc-cccCCeeeecCccc--cCC--------------------CC----Cccc-C
Q 043429 290 PI--KC-KWKN-FKQVGYLSASIRSVAD-ARVGDTITHFNRKA--DNL--------------------LP----GYEE-A 337 (646)
Q Consensus 290 ~~--~~-~~~v-aG~Vg~i~~~i~~~~~-~~~GDtl~~~~~~~--~~~--------------------l~----~~~~-~ 337 (646)
.. +. .-++ +|+..-+. |+ .+ ...||+++...++. .+. +. .+.. .
T Consensus 223 ~~~~g~~v~~a~~g~~V~i~-gl---~~~~~~Gd~~~~~~~~~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 298 (501)
T 1zo1_I 223 RNELGQEVLEAGPSIPVEIL-GL---SGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGE 298 (501)
T ss_dssp CCTTTTSEEEECCSSCSSSE-EE---CSCCCTTEEEEEECSSCTTBCSSCBTTCCCCSHHHHHHHHHHHSSTTTSCSSCC
T ss_pred EecCCCcCcEeccCCcEEEe-CC---CCCCCCCCEEEecCCHHHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHhhhhccC
Confidence 21 11 1222 66543222 43 34 47899997654321 000 00 0111 1
Q ss_pred CceEEeeeeeCCCCCHHHHHHHHHHHhhcCCceEEEe--------------CCCccccceeEeccchhhHHHHHHHHHHH
Q 043429 338 TPMVFCGLFPVDADQFPELRDALEKLQLNDAALKFEP--------------ETSSAMGFGFRCGFLGLLHMEIVQERLER 403 (646)
Q Consensus 338 ~p~v~~~i~p~~~~d~~~L~~aL~kL~~~Dpsl~~~~--------------e~~~~lg~g~r~gflG~lHlei~~erL~~ 403 (646)
.+.+-..+.+......+.|.++|.+|..++..+.+-. ..+.|+.-||-+...... +++-+
T Consensus 299 ~~~~~~ivkad~~gs~ea~~~~l~~~~~~~~~~~v~~~~vG~i~~~Dv~~a~~~~a~i~~fnv~~~~~~------~~~a~ 372 (501)
T 1zo1_I 299 VHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASA------RKVIE 372 (501)
T ss_dssp CCCCCCBCCCSCHHHHHHHHHHHTTTTCCCSBCCCCCSSSSSSHHHHSTTTCGGGCCEEECSSCCCHHH------HTTSC
T ss_pred CceEEEEEEECCcCCHHHHHHHHHhhcccccceEEEEeccCCCCHHHHHHHHhcCCEEEEecCCCCHHH------HHHHH
Confidence 2234445566666778999999999998888776531 222333333333322221 34445
Q ss_pred HcCceEEEecceeEEEEEeeCCeEEEEeCCCCCCCCcccccccccEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeC-
Q 043429 404 EYNLSLITTAPSVVYRVNCVNGQTVECSNPSLLPEPGQRRSIEEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFT- 482 (646)
Q Consensus 404 e~~~~v~~t~P~V~Y~e~~~~g~~~~~~~p~~~p~~~~i~~llEP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~- 482 (646)
+.|+++..- +|+|+-.- + + -..+..+|+|...-+++-+.+.. .|.. .++.|.+.+....+
T Consensus 373 ~~~v~i~~~--~iiy~l~~-~-----------~--~~~~~~~~~~~~~~~~~g~a~v~-~~f~--~~~~~~iaG~~v~~G 433 (501)
T 1zo1_I 373 AESLDLRYY--SVIYNLID-E-----------V--KAAMSGMLSPELKQQIIGLAEVR-DVFK--SPKFGAIAGCMVTEG 433 (501)
T ss_dssp SSSSCEEES--CCCSHHHH-H-----------T--HHHHTTTSSTTCCCCCCCCEEEE-ECSS--CCCSSCEEEEEEEEE
T ss_pred HcCCEEEEe--CHHHHHHH-H-----------H--HHHHHhhcCceeeeeeeeEEEEE-EEEe--cCCCCEEEEEEEEeC
Confidence 557766544 55664210 0 0 00111223333222222222111 0000 12335555554332
Q ss_pred ----CCEEE------EEEEechhhhHhhHHHHhcccCcceEEEEEEEccee
Q 043429 483 ----ESRAS------LIYELPLAEMVGDFFDQLKSRTKGYASMEYTFLGYK 523 (646)
Q Consensus 483 ----~~~~~------i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~~~~~y~ 523 (646)
+..+. +.|+-.++.| ..|-++.+....|+ .+-..+.+|.
T Consensus 434 ~~~~~~~~~~~r~~~~i~~g~i~sl-~~~k~~v~e~~~g~-ecgi~~~~~~ 482 (501)
T 1zo1_I 434 VVKRHNPIRVLRDNVVIYEGELESL-RRFKDDVNEVRNGM-ECGIGVKNYN 482 (501)
T ss_dssp EEETTCEEECCSSSCCCEEEEBCCE-EETTEEESEEETTC-CEEEEBCCCT
T ss_pred EEecCCeEEEEeCCeEEEEEEEehh-cccCccccEECCCC-EEEEEEcCcC
Confidence 11111 2356678887 89999999999998 4566666554
No 31
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.4e-26 Score=260.47 Aligned_cols=237 Identities=22% Similarity=0.280 Sum_probs=179.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccc----------------cccccccccccccccceeeeeeEEEEEEEec
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE----------------MKEQFLDNMDLERERGITIKLQAARMRYVFE 147 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~----------------~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~ 147 (646)
...||+++|++|||||||+++|++.++.+.... ...+++|....++++|+|++.....+.+.
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~-- 243 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH-- 243 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS--
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC--
Confidence 457999999999999999999998776665421 12456788888999999999887766554
Q ss_pred CCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCC-------ccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCC
Q 043429 148 NEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG-------VEAQTLANVYLALENNLE-IIPVLNKIDLPGAE 219 (646)
Q Consensus 148 ~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g-------~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~ 219 (646)
++.++|||||||.+|...+..+++.+|++|+|||+++| ...|+..++..+...++| +++|+||+|+.+.+
T Consensus 244 --~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 244 --RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp --SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTC
T ss_pred --CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchh
Confidence 78999999999999999999999999999999999987 456888888888888877 99999999998743
Q ss_pred c---hHHHHHHHH---HhCCC--cccccccccccccchhHH--------------HHHHHHhC----CC--CCCCCCCCc
Q 043429 220 P---SRVAREIEE---VIGLD--CTNAILCSAKEGIGINEI--------------LNAIVKRI----PP--PSNTAGCPF 271 (646)
Q Consensus 220 ~---~~~~~el~~---~l~~~--~~~i~~vSAk~g~GV~eL--------------l~~I~~~i----p~--P~~~~~~pl 271 (646)
. ++..+++.. .++.. ..+++++||++|.|++++ +..+++.+ |+ |....+.|+
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~ 401 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPF 401 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCC
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccch
Confidence 2 223334433 34543 347999999999999854 22333333 32 456678999
Q ss_pred eEEEEEEEeec-----c---------------ceEEecCCCceEEc----------------------cceeeEE-Eeec
Q 043429 272 RALIFDRIIML-----M---------------KLECYPPIKCKWKN----------------------FKQVGYL-SASI 308 (646)
Q Consensus 272 ~~~vf~~~~d~-----~---------------~~i~~~~~~~~~~v----------------------aG~Vg~i-~~~i 308 (646)
++.|.+++..+ + +.|.+++.+...+| |||.+.+ +.++
T Consensus 402 r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~ 481 (611)
T 3izq_1 402 LFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKA 481 (611)
T ss_dssp EEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSC
T ss_pred hhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEcccccccccccccceecCCCcceEEeeec
Confidence 99998887754 1 67778877765433 7884433 3333
Q ss_pred ccccccccCCeeeecCc
Q 043429 309 RSVADARVGDTITHFNR 325 (646)
Q Consensus 309 ~~~~~~~~GDtl~~~~~ 325 (646)
+..+++.||+|++.++
T Consensus 482 -~~~di~rGdvl~~~~~ 497 (611)
T 3izq_1 482 -YPEDIQNGDLAASVDY 497 (611)
T ss_dssp -CTTSCCTTCEEBCSTT
T ss_pred -cHhhCcceEEccCCCC
Confidence 4588999999998765
No 32
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.92 E-value=3.9e-27 Score=256.51 Aligned_cols=165 Identities=22% Similarity=0.218 Sum_probs=122.6
Q ss_pred cccCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEE
Q 043429 77 LLKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLI 156 (646)
Q Consensus 77 ~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~li 156 (646)
|...+....++|+|+|++|+|||||+++|+..... ..+..+|+|++.....+.+. ....+++|
T Consensus 26 m~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~--------------~~~~~~gtT~d~~~~~~~~~---~~~~l~li 88 (423)
T 3qq5_A 26 MRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVS--------------IVSDYAGTTTDPVYKSMELH---PIGPVTLV 88 (423)
T ss_dssp CCC---CCCEEEEEECSCSTTTTTTTTSSCC---------------------------CCCCEEEEEET---TTEEEEEE
T ss_pred cccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCC--------------ccCCCCCeeeeeEEEEEEEC---CCCeEEEE
Confidence 44445567789999999999999999999763211 23456788888887777665 13489999
Q ss_pred eCCCCccchhh-------HhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHH
Q 043429 157 DTPGHVDFSYE-------VSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEE 229 (646)
Q Consensus 157 DTPG~~df~~~-------~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~ 229 (646)
||||+.+|... +..+++.+|++|+|+|+ +...++...+..+.+.++|+++|+||+|+...+..+..+++.+
T Consensus 89 DTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~~ 166 (423)
T 3qq5_A 89 DTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYES 166 (423)
T ss_dssp ECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSSC
T ss_pred ECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHHH
Confidence 99999988643 45678889999999999 6677777777777788999999999999988776655555554
Q ss_pred HhCCCcccccccccccccchhHHHHHHHHhCCCC
Q 043429 230 VIGLDCTNAILCSAKEGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 230 ~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P 263 (646)
.++. +++++||++|.|+++++++|.+.++.+
T Consensus 167 ~~g~---~v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 167 RYEA---KVLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CTTC---CCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred HcCC---CEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 4454 699999999999999999999999654
No 33
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.92 E-value=3.3e-26 Score=255.42 Aligned_cols=180 Identities=25% Similarity=0.322 Sum_probs=146.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
.++|+++||+|||||||+++|.... ......+|+|.+.....+.+. .+..++|||||||.+|
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~---------------~~~~~~~giT~~i~~~~v~~~---~g~~i~~iDTPGhe~f 65 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQ---------------VAAMEAGGITQHIGAFLVSLP---SGEKITFLDTPGHAAF 65 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHH---------------HHHSSSCCBCCCTTSCCBCSS---CSSCCBCEECSSSCCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---------------cccccCCceeEEEeEEEEEeC---CCCEEEEEECCChHHH
Confidence 4689999999999999999998732 112335677776655443331 2567899999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCC------Ccccc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL------DCTNA 238 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~------~~~~i 238 (646)
..++.++++.+|++|||+|++++...|+...|..+...++|+++|+||+|+++++.+...+++.+. +. ...++
T Consensus 66 ~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~-~~~~e~~~~~~~i 144 (537)
T 3izy_P 66 SAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAY-DVVCEDYGGDVQA 144 (537)
T ss_dssp TTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHT-TSCCCCSSSSEEE
T ss_pred HHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhh-hhhHHhcCCCceE
Confidence 999999999999999999999999999999999999999999999999999877665544444432 11 12378
Q ss_pred cccccccccchhHHHHHHHHhC--CCCCCCCCCCceEEEEEEEeecc
Q 043429 239 ILCSAKEGIGINEILNAIVKRI--PPPSNTAGCPFRALIFDRIIMLM 283 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~i--p~P~~~~~~pl~~~vf~~~~d~~ 283 (646)
+++||++|.|+++|+++|...+ ++|..+++.|+++.|+++++|++
T Consensus 145 v~vSAktG~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g 191 (537)
T 3izy_P 145 VHVSALTGENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKG 191 (537)
T ss_dssp CCCCSSSSCSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTT
T ss_pred EEEECCCCCCchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCC
Confidence 9999999999999999998865 45566778999999999999987
No 34
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.89 E-value=9.4e-23 Score=203.02 Aligned_cols=157 Identities=18% Similarity=0.238 Sum_probs=124.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.||+|+|.+|+|||||+++|+... +.+ +...|+........+..++..+.++||||+|+++|.
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~-----------f~~------~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~ 76 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDS-----------FDN------TYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR 76 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-----------CC----------------CEEEEEECSSCEEEEEEECCSCTTTCG
T ss_pred EEEEEECcCCcCHHHHHHHHHhCC-----------CCC------CcCCccceEEEEEEEEecceEEEEEEEECCCchhhh
Confidence 599999999999999999998721 111 122366655555566667778999999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCccccc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTNAI 239 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~i~ 239 (646)
..+..+++.+|++++|+|.++..+++.+..|+..+. .++|+++|+||+|+...+ ..+..+++.+.++. +++
T Consensus 77 ~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~---~~~ 153 (216)
T 4dkx_A 77 SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNV---MFI 153 (216)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC---EEE
T ss_pred hHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCC---eeE
Confidence 999999999999999999999999999988877654 378999999999997543 34455677777776 489
Q ss_pred ccccccccchhHHHHHHHHhCCC
Q 043429 240 LCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 240 ~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
++||++|.||+++|+.|++.++.
T Consensus 154 e~SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 154 ETSAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp EEBTTTTBSHHHHHHHHHHHC--
T ss_pred EEeCCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999999998864
No 35
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=192.36 Aligned_cols=161 Identities=17% Similarity=0.196 Sum_probs=120.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
+...+|+++|++|+|||||+++|+.... ......|+........+..++..+.+++|||||+.
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~-----------------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAF-----------------SERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC---------------------------CEEEEEEEETTEEEEEEEECCTTCG
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCC-----------------CCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 4568999999999999999999987321 11122344433333444445556899999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCT 236 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~ 236 (646)
+|...+..+++.+|++|+|+|+++..+++....|...+. .++|+++|+||+|+...+ ..+..+++.+.++..
T Consensus 90 ~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-- 167 (201)
T 2hup_A 90 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDIL-- 167 (201)
T ss_dssp GGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCS--
T ss_pred hHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCC--
Confidence 999999999999999999999999888888877776554 468999999999997532 233345555556552
Q ss_pred cccccccccccchhHHHHHHHHhCCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+++++||++|.||++++++|.+.+..
T Consensus 168 ~~~~~SA~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 168 CAIETSAKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999987753
No 36
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.87 E-value=2e-21 Score=185.40 Aligned_cols=160 Identities=19% Similarity=0.216 Sum_probs=120.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
...+|+++|++|+|||||+++|+..... .+..+ |+........+..++..+.+++|||||+.+
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~---------------~~~~~--~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 73 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFV---------------EFQES--TIGAAFFSQTLAVNDATVKFEIWDTAGQER 73 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCT---------------TTSCC--CSCCSEEEEEEEETTEEEEEEEEECCCSGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC---------------CcCCC--CceeEEEEEEEEECCEEEEEEEEeCCCChh
Confidence 3469999999999999999999873211 11111 222222233344445578999999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc----CCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCccc
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTN 237 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~----~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~ 237 (646)
|...+..+++.+|++|+|+|++++.+++....|...+.. ++|+++|+||+|+.... ..+..+++.+..+. +
T Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~---~ 150 (181)
T 2efe_B 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGL---F 150 (181)
T ss_dssp GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC---E
T ss_pred hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCC---E
Confidence 999999999999999999999998888887777665542 78899999999996543 23334455555554 5
Q ss_pred ccccccccccchhHHHHHHHHhCCCC
Q 043429 238 AILCSAKEGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~ip~P 263 (646)
++++||++|.|+++++++|.+.++..
T Consensus 151 ~~~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 151 FMETSAKTATNVKEIFYEIARRLPRV 176 (181)
T ss_dssp EEECCSSSCTTHHHHHHHHHHTCC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 89999999999999999999988654
No 37
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.87 E-value=2.1e-21 Score=186.96 Aligned_cols=160 Identities=21% Similarity=0.198 Sum_probs=121.9
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEE-EEEEEecCC---------C
Q 043429 81 PASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAA-RMRYVFENE---------P 150 (646)
Q Consensus 81 ~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~-~~~~~~~~~---------~ 150 (646)
+.+...+|+|+|++|+|||||+++|+..... .....|+..... ...+..++. .
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~-----------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFN-----------------SKFITTVGIDFREKRVVYRANGPDGAVGRGQR 69 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCC-----------------CSCCCCCSEEEEEEEEEECTTSCCCSSCCCEE
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCC-----------------cCcccccceeeeeEEEEEecCCcccccccCcE
Confidence 3455689999999999999999999873210 111223333332 222333333 5
Q ss_pred eEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCC--CchHH
Q 043429 151 FCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGA--EPSRV 223 (646)
Q Consensus 151 ~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~--~~~~~ 223 (646)
+.+++|||||+.+|...+..+++.+|++|+|+|++++.+.+....|...+. .++|+++|+||+|+... ...+.
T Consensus 70 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 149 (195)
T 3bc1_A 70 IHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEE 149 (195)
T ss_dssp EEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHH
T ss_pred EEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHH
Confidence 789999999999999999999999999999999999988888877776654 48999999999998653 23344
Q ss_pred HHHHHHHhCCCcccccccccccccchhHHHHHHHHhC
Q 043429 224 AREIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 224 ~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
.+++.+.++. +++++||++|.|+++++++|.+.+
T Consensus 150 ~~~~~~~~~~---~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 150 ARELAEKYGI---PYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp HHHHHHHHTC---CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCC---CEEEEECCCCCCHHHHHHHHHHHH
Confidence 5566666665 589999999999999999998765
No 38
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=2e-21 Score=188.51 Aligned_cols=160 Identities=24% Similarity=0.283 Sum_probs=121.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
+..+|+++|++|+|||||+++|+..... . .... |+........+..++..+.+++|||||+.+
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-----------~--~~~~----~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 84 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFD-----------H--NISP----TIGASFMTKTVPCGNELHKFLIWDTAGQER 84 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCC-----------T--TCCC----CSSEEEEEEEEECSSSEEEEEEEEECCSGG
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCC-----------C--CcCC----CcceeEEEEEEEeCCEEEEEEEEcCCCchh
Confidence 4579999999999999999999873211 0 0111 222222233344455678999999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc----CCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCccc
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTN 237 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~----~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~ 237 (646)
|...+..+++.+|++|+|+|+++..+++....|...+.. ++|+++|+||+|+.... ..+..+++.+.++ .+
T Consensus 85 ~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~---~~ 161 (192)
T 2fg5_A 85 FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIG---AI 161 (192)
T ss_dssp GGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTT---CE
T ss_pred hHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcC---CE
Confidence 999999999999999999999999888888888766543 78999999999986422 2333444444444 36
Q ss_pred ccccccccccchhHHHHHHHHhCCCC
Q 043429 238 AILCSAKEGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~ip~P 263 (646)
++++||++|.|+++++++|.+.++..
T Consensus 162 ~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 162 VVETSAKNAINIEELFQGISRQIPPL 187 (192)
T ss_dssp EEECBTTTTBSHHHHHHHHHHTCC--
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence 89999999999999999999988654
No 39
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.86 E-value=4e-22 Score=189.80 Aligned_cols=157 Identities=32% Similarity=0.417 Sum_probs=118.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
+..+|+++|++|+|||||+++|+..... .....++|.......+.+. +..+++|||||+.+
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~----~~~~~l~Dt~G~~~ 67 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVT---------------EQEAGGITQHIGAYQVTVN----DKKITFLDTPGHEA 67 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSS---------------CSSCCSSSTTCCCCEEEET----TEEEEESCCCSSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccc---------------cCCCCceeEeeeEEEEEeC----CceEEEEECCCCHH
Confidence 4579999999999999999999863211 1112333433333333333 57889999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCC-C-----ccc
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL-D-----CTN 237 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~-~-----~~~ 237 (646)
|...+.+++..+|++++|+|++++...++...+......++|+++|+||+|+...+.++..+.+.+ .+. . ..+
T Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 146 (178)
T 2lkc_A 68 FTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPDRVMQELME-YNLVPEEWGGDTI 146 (178)
T ss_dssp SSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTT-TTCCBTTTTSSEE
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHh-cCcChhHcCCccc
Confidence 999988999999999999999998888887777766667999999999999987654444433322 111 1 136
Q ss_pred ccccccccccchhHHHHHHHHhC
Q 043429 238 AILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
++++||++|.|+++++++|.+.+
T Consensus 147 ~~~~Sa~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 147 FCKLSAKTKEGLDHLLEMILLVS 169 (178)
T ss_dssp EEECCSSSSHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHhh
Confidence 89999999999999999998754
No 40
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=1.7e-21 Score=188.91 Aligned_cols=167 Identities=16% Similarity=0.197 Sum_probs=123.0
Q ss_pred cccCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEE
Q 043429 77 LLKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLI 156 (646)
Q Consensus 77 ~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~li 156 (646)
|..++.....+|+++|++|+|||||+++|+..... ... ..|+.... ...+..++..+.+++|
T Consensus 10 m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~-----------~~~------~~t~~~~~-~~~~~~~~~~~~~~i~ 71 (194)
T 2atx_A 10 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFP-----------EEY------VPTVFDHY-AVSVTVGGKQYLLGLY 71 (194)
T ss_dssp CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCC-----------CSC------CCSSCCCE-EEEEESSSCEEEEEEE
T ss_pred cCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCC-----------CCC------CCccccee-EEEEEECCEEEEEEEE
Confidence 44455556689999999999999999999873211 000 11221111 2233344556899999
Q ss_pred eCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHH-HHHHHHHc---CCCeEEEEeccCCCCCC-------------
Q 043429 157 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLALEN---NLEIIPVLNKIDLPGAE------------- 219 (646)
Q Consensus 157 DTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~-~~~~~~~~---~~piIvViNKiDl~~~~------------- 219 (646)
||||+.+|...+..+++.+|++++|+|++++.+++... .|...+.. ++|+++|+||+|+....
T Consensus 72 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 151 (194)
T 2atx_A 72 DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKP 151 (194)
T ss_dssp CCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCC
T ss_pred ECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcc
Confidence 99999999999999999999999999999988887775 56555443 89999999999997531
Q ss_pred -chHHHHHHHHHhCCCcccccccccccccchhHHHHHHHHhCCCC
Q 043429 220 -PSRVAREIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 220 -~~~~~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P 263 (646)
..+...++.+.++. .+++++||++|.|+++++++|.+.+..|
T Consensus 152 v~~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~~i~~p 194 (194)
T 2atx_A 152 ICVEQGQKLAKEIGA--CCYVECSALTQKGLKTVFDEAIIAILTP 194 (194)
T ss_dssp CCHHHHHHHHHHHTC--SCEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred cCHHHHHHHHHHcCC--cEEEEeeCCCCCCHHHHHHHHHHHHhcC
Confidence 12334455555654 2589999999999999999999876543
No 41
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.86 E-value=1.8e-21 Score=189.94 Aligned_cols=163 Identities=18% Similarity=0.226 Sum_probs=116.9
Q ss_pred cCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeC
Q 043429 79 KVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDT 158 (646)
Q Consensus 79 ~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDT 158 (646)
.+..+...+|+|+|++|+|||||+++|+..... . ....|+........+..++..+.++||||
T Consensus 22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~-----------~------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt 84 (199)
T 2p5s_A 22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFR-----------E------NISATLGVDFQMKTLIVDGERTVLQLWDT 84 (199)
T ss_dssp ------CEEEEEESSTTSSHHHHHHHHHHCCCC---------------------------CEEEEEEETTEEEEEEEEEC
T ss_pred CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCC-----------c------cCCCCccceeEEEEEEECCEEEEEEEEEC
Confidence 344556789999999999999999999873211 0 00112222222223344555788999999
Q ss_pred CCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCC--------CCchHHHHH
Q 043429 159 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPG--------AEPSRVARE 226 (646)
Q Consensus 159 PG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~--------~~~~~~~~e 226 (646)
||+.+|...+..+++.+|++|+|+|++++.+++.+..|...+. .++|+++|+||+|+.. ....+..++
T Consensus 85 ~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~ 164 (199)
T 2p5s_A 85 AGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEK 164 (199)
T ss_dssp TTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHH
T ss_pred CCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHH
Confidence 9999999999999999999999999999988888888876554 3799999999999852 112334455
Q ss_pred HHHHhCCCcccccccccccccchhHHHHHHHHhCC
Q 043429 227 IEEVIGLDCTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 227 l~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+....+. +++++||++|.||++++++|.+.+.
T Consensus 165 ~~~~~~~---~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 165 LAMTYGA---LFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHHHHTC---EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHcCC---eEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 5555655 5899999999999999999998764
No 42
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.86 E-value=2.8e-21 Score=187.03 Aligned_cols=159 Identities=18% Similarity=0.229 Sum_probs=123.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
+...+|+++|++|+|||||+++|+.... ..+....++.... ...+..++..+.+++|||||+.
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~---------------~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~ 76 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTY---------------TESYISTIGVDFK--IRTIELDGKTIKLQIWDTAGQE 76 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCC---------------CSCCCCCSSEEEE--EEEEEETTEEEEEEEEEECCSG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCC---------------CCCCCCcccceEE--EEEEEECCEEEEEEEEECCCcH
Confidence 4568999999999999999999987321 1111222333332 2333444556889999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc----CCCeEEEEeccCCCCCCc--hHHHHHHHHHhCCCcc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPGAEP--SRVAREIEEVIGLDCT 236 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~----~~piIvViNKiDl~~~~~--~~~~~el~~~l~~~~~ 236 (646)
++...+..+++.+|++|+|+|+++..+++....|...+.. ++|+++|+||+|+..... ....+++.+.++.
T Consensus 77 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--- 153 (196)
T 3tkl_A 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI--- 153 (196)
T ss_dssp GGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC---
T ss_pred hhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC---
Confidence 9999999999999999999999998888888888766543 789999999999976542 3445566666765
Q ss_pred cccccccccccchhHHHHHHHHhCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+++++||++|.|++++|++|.+.+.
T Consensus 154 ~~~~~Sa~~g~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 154 PFLETSAKNATNVEQSFMTMAAEIK 178 (196)
T ss_dssp CEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5999999999999999999988663
No 43
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=2.3e-21 Score=186.93 Aligned_cols=160 Identities=14% Similarity=0.106 Sum_probs=113.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
+..+|+++|++|+|||||+++|+..... .. ..|+......+.+. ++.+++|||||+.+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--------------~~----~~t~~~~~~~~~~~----~~~~~i~Dt~G~~~ 72 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV--------------HT----SPTIGSNVEEIVIN----NTRFLMWDIGGQES 72 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE--------------EE----ECCSCSSCEEEEET----TEEEEEEECCC---
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--------------cC----cCCCccceEEEEEC----CEEEEEEECCCCHh
Confidence 3579999999999999999999862110 01 11333333334443 68999999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCCch-HHHHHHHHH-hCCCcc
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAEPS-RVAREIEEV-IGLDCT 236 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~~~-~~~~el~~~-l~~~~~ 236 (646)
+...+..+++.+|++++|+|++++.+++....|..... .+.|+++|+||+|+.+.... +..+.+... +.....
T Consensus 73 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~ 152 (187)
T 1zj6_A 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQW 152 (187)
T ss_dssp -CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCE
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCc
Confidence 99999999999999999999999988888777765553 47899999999999765432 222222111 111223
Q ss_pred cccccccccccchhHHHHHHHHhCCCCCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIPPPSN 265 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip~P~~ 265 (646)
+++++||++|.|+++++++|.+.++.+..
T Consensus 153 ~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 153 HIQACCALTGEGLCQGLEWMMSRLKIRLE 181 (187)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHHCC---
T ss_pred EEEEccCCCCcCHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999998876543
No 44
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=3.8e-21 Score=180.88 Aligned_cols=156 Identities=21% Similarity=0.236 Sum_probs=118.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|++|+|||||+++|+..... .+.. .|+........+..++..+.+++|||||+.++.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~---------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 66 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFA---------------ENKE--PTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA 66 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC---------------TTCC--CCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC---------------CCCC--CccceeEEEEEEEECCEEEEEEEEECCCChhhh
Confidence 58999999999999999999873211 0111 122222222333445557899999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCC-----CchHHHHHHHHHhCCCcc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGA-----EPSRVAREIEEVIGLDCT 236 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~-----~~~~~~~el~~~l~~~~~ 236 (646)
..+..+++.+|++++|+|++++.+.+....|...+. .++|+++|+||+|+... ...+..+++.+..+.
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~--- 143 (170)
T 1ek0_A 67 SLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGL--- 143 (170)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTC---
T ss_pred hhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCC---
Confidence 999999999999999999999888888877765554 37899999999998643 123344555555665
Q ss_pred cccccccccccchhHHHHHHHHhCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+++++||++|.|+++++++|.+.++
T Consensus 144 ~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 144 LFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp EEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 5899999999999999999998775
No 45
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.86 E-value=3.4e-21 Score=183.08 Aligned_cols=159 Identities=24% Similarity=0.247 Sum_probs=120.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH 161 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~ 161 (646)
.++..+|+++|++|+|||||+++|+...... . ...|+........+..++..+.+++|||||+
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----------~------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 74 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMA-----------D------CPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 74 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCS-----------S------CTTSCCCCEEEEEEEETTEEEEEEEEECTTG
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCC-----------C------CCCccceEEEEEEEEECCeEEEEEEEECCCC
Confidence 3456899999999999999999998732110 0 0112222222233344455789999999999
Q ss_pred ccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCc
Q 043429 162 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDC 235 (646)
Q Consensus 162 ~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~ 235 (646)
.++...+..+++.+|++++|+|++++.+++....|...+. .++|+++|+||+|+.... ..+..+++.+.++.
T Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-- 152 (179)
T 1z0f_A 75 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGL-- 152 (179)
T ss_dssp GGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC--
T ss_pred hHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC--
Confidence 9999999999999999999999999988888887766544 478999999999996432 22334455555554
Q ss_pred ccccccccccccchhHHHHHHHHhC
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++++||++|.|+++++++|.+.+
T Consensus 153 -~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 153 -LFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp -EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998765
No 46
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.86 E-value=2.6e-21 Score=186.92 Aligned_cols=161 Identities=19% Similarity=0.245 Sum_probs=122.4
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCC
Q 043429 81 PASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPG 160 (646)
Q Consensus 81 ~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG 160 (646)
..+...+|+++|++|+|||||+++|+...... . ... |+........+..++..+.+++|||||
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-----------~--~~~----t~~~~~~~~~~~~~~~~~~~~l~Dt~G 80 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTP-----------A--FVS----TVGIDFKVKTVYRHDKRIKLQIWDTAG 80 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCC-----------S--CCC----CCCCEEEEEEEEETTEEEEEEEEECCS
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCC-----------C--cCC----ceeEEEEEEEEEECCeEEEEEEEeCCC
Confidence 34557899999999999999999998732110 0 011 222222222333445578999999999
Q ss_pred CccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc----CCCeEEEEeccCCCCCC--chHHHHHHHHHhCCC
Q 043429 161 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLD 234 (646)
Q Consensus 161 ~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~----~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~ 234 (646)
+.+|...+..+++.+|++|+|+|++++.+++....|...+.. +.|+++|+||+|+.... ..+..+++.+.+++
T Consensus 81 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~- 159 (189)
T 2gf9_A 81 QERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGF- 159 (189)
T ss_dssp CCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-
T ss_pred cHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCC-
Confidence 999999999999999999999999998888888777766543 78999999999986532 23445666666775
Q ss_pred cccccccccccccchhHHHHHHHHhCC
Q 043429 235 CTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 235 ~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+++++||++|.|+++++++|.+.++
T Consensus 160 --~~~~~Sa~~g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 160 --EFFEASAKENINVKQVFERLVDVIC 184 (189)
T ss_dssp --EEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred --eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999988653
No 47
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.86 E-value=2.6e-21 Score=182.33 Aligned_cols=157 Identities=20% Similarity=0.223 Sum_probs=118.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|++|+|||||+++|+..... ..... |+........+..++..+.+.+|||||+.++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~---------------~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 65 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFN---------------PSFIT--TIGIDFKIKTVDINGKKVKLQIWDTAGQERF 65 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC---------------C---------CCEEEEEEESSSCEEEEEEECCTTGGGT
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC---------------CCCCC--ccceeEEEEEEEECCEEEEEEEEeCCCChhh
Confidence 479999999999999999999873211 11112 2222222233444555688999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC-chHHHHHHHHHhCCCccccc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE-PSRVAREIEEVIGLDCTNAI 239 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~-~~~~~~el~~~l~~~~~~i~ 239 (646)
...+..+++.+|++++|+|++++.+++....|...+. .+.|+++|+||+|+.... ..+..+++.+.++. +++
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~ 142 (170)
T 1g16_A 66 RTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGI---PFI 142 (170)
T ss_dssp SCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTC---CEE
T ss_pred hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCC---eEE
Confidence 9999999999999999999999888888777766554 378999999999995432 33445566666665 589
Q ss_pred ccccccccchhHHHHHHHHhCC
Q 043429 240 LCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 240 ~vSAk~g~GV~eLl~~I~~~ip 261 (646)
++||++|.|+++++++|.+.+.
T Consensus 143 ~~Sa~~~~gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 143 ESSAKNDDNVNEIFFTLAKLIQ 164 (170)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 48
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.86 E-value=1.9e-21 Score=182.80 Aligned_cols=157 Identities=17% Similarity=0.212 Sum_probs=120.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
...+|+++|++|+|||||+++|+..... .....|+........+..++..+.+.+|||||+.+
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-----------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 66 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFT-----------------KDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCC-----------------CCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCC-----------------CCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHh
Confidence 4579999999999999999999873110 11122333333333444455578999999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH---cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcccc
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~---~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~i 238 (646)
+...+..+++.+|++++|+|++++.+.+....|...+. .+.|+++|+||+|+.... ..+..+++.+.++. ++
T Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~ 143 (168)
T 1z2a_A 67 FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKL---RF 143 (168)
T ss_dssp TTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTC---EE
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCC---eE
Confidence 99889999999999999999999888887777766554 389999999999986532 23444556666665 58
Q ss_pred cccccccccchhHHHHHHHHhC
Q 043429 239 ILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++||++|.|+++++++|.+.+
T Consensus 144 ~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 144 YRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp EECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998765
No 49
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.86 E-value=2.5e-21 Score=184.03 Aligned_cols=159 Identities=16% Similarity=0.147 Sum_probs=118.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
...+|+++|++|+|||||+++|+..... .+.. .|+........+..++..+.+.+|||||+.+
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~---------------~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 68 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFD---------------TQLF--HTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 68 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCC---------------C------CCSEEEEEEEEEETTEEEEEEEEECCCCGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC---------------CCCC--CceeeeEEEEEEEECCEEEEEEEEeCCCchh
Confidence 4579999999999999999999873211 1111 1233333333444455568999999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH--------cCCCeEEEEeccCCCCCC-chHHHHHHHHHhCCC
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--------NNLEIIPVLNKIDLPGAE-PSRVAREIEEVIGLD 234 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~--------~~~piIvViNKiDl~~~~-~~~~~~el~~~l~~~ 234 (646)
+...+..+++.+|++++|+|++++.+++....|...+. .++|+++|+||+|+.... ..+...++.+. ..
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~--~~ 146 (177)
T 1wms_A 69 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD--NG 146 (177)
T ss_dssp GHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH--TT
T ss_pred hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh--cC
Confidence 99999999999999999999999988888877766543 578999999999997432 22333344332 22
Q ss_pred cccccccccccccchhHHHHHHHHhCC
Q 043429 235 CTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 235 ~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
..+++++||++|.|+++++++|.+.+.
T Consensus 147 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 147 DYPYFETSAKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp CCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 346999999999999999999988764
No 50
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.86 E-value=1.8e-21 Score=213.71 Aligned_cols=224 Identities=18% Similarity=0.193 Sum_probs=154.3
Q ss_pred cCCCCCCEEEeeecccccccCCCcCccchhhcccccccccccccccccceeEeecCCCCCchHHhhhhhcccccc---CC
Q 043429 5 LSSSPAPVLSIKHQTFATLKKPHISSLSHFLSKSHRRCNYSLSISKHSCIFRVSCQSQATDAELATRVGQDRLLK---VP 81 (646)
Q Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~~s~~~~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~---~~ 81 (646)
+...+.|++.+.++.+..... .... .++..+...++.+|+.++.+..++.+.+....... ..
T Consensus 107 l~~~~~pvilv~NK~D~~~~~---~~~~------------~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~ 171 (436)
T 2hjg_A 107 LYRTKKPVVLAVNKLDNTEMR---ANIY------------DFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKY 171 (436)
T ss_dssp HTTCCSCEEEEEECCCC--------CCC------------SSGGGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCCSSCC
T ss_pred HHHcCCCEEEEEECccCccch---hhHH------------HHHHcCCCCeEEEeCcCCCChHHHHHHHHHhcCccccccc
Confidence 455788999999998854221 1111 11223344678999999999988887764432211 12
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH 161 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~ 161 (646)
.+..++|+++|++|||||||+++|++... ...+..+|+|.+.....+.+. +..++||||||+
T Consensus 172 ~~~~~ki~lvG~~nvGKSSLin~l~~~~~--------------~~~~~~~gtT~d~~~~~~~~~----~~~~~l~DT~G~ 233 (436)
T 2hjg_A 172 NEEVIQFCLIGRPNVGKSSLVNAMLGEER--------------VIVSNVAGTTRDAVDTSFTYN----QQEFVIVDTAGM 233 (436)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTT--------------EEEC---------CCEEEEET----TEEEEETTHHHH
T ss_pred cccCcEEEEEcCCCCCHHHHHHHHhCCCc--------------eeecCCCCceeeeeEEEEEEC----CeEEEEEECCCc
Confidence 34568999999999999999999987321 113445678877766555554 667999999999
Q ss_pred cc----------chhhH-hhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCc---hHHHHHH
Q 043429 162 VD----------FSYEV-SRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEP---SRVAREI 227 (646)
Q Consensus 162 ~d----------f~~~~-~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~---~~~~~el 227 (646)
.+ |.... ..+++.+|++++|+|++++.+.++...+..+.+.++|+++|+||+|+...+. ++..+++
T Consensus 234 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~ 313 (436)
T 2hjg_A 234 RKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENI 313 (436)
T ss_dssp TCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHH
T ss_pred CcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHH
Confidence 44 33222 3578899999999999999999998777777778999999999999876543 3445566
Q ss_pred HHHhC-CCcccccccccccccchhHHHHHHHHhCC
Q 043429 228 EEVIG-LDCTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 228 ~~~l~-~~~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
.+.+. ....+++++||++|.|++++++.+.+.+.
T Consensus 314 ~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 314 RDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASE 348 (436)
T ss_dssp HHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHH
Confidence 66553 23457999999999999999999887553
No 51
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.86 E-value=3.4e-21 Score=181.25 Aligned_cols=158 Identities=21% Similarity=0.216 Sum_probs=117.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|++|+|||||+++|+..... .. ... |+........+..++..+.+++|||||+.+|
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~-----------~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 68 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFH-----------EF--QES----TIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-----------TT--CCC----CSSEEEEEEEEEETTEEEEEEEEEECCSGGG
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCC-----------CC--CCC----ccceEEEEEEEEECCEEEEEEEEeCCCcHHh
Confidence 469999999999999999999873211 00 111 2222222233344455789999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcccc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~i 238 (646)
...+..+++.+|++++|+|++++.+++....|...+. .++|+++|+||+|+.... ..+...++....+. ++
T Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~ 145 (170)
T 1r2q_A 69 HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSL---LF 145 (170)
T ss_dssp GGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC---EE
T ss_pred hhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCC---eE
Confidence 9999999999999999999999888887777765543 268899999999986432 22333444444443 58
Q ss_pred cccccccccchhHHHHHHHHhCCC
Q 043429 239 ILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+++||++|.|+++++++|.+.++.
T Consensus 146 ~~~Sa~~g~gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 146 METSAKTSMNVNEIFMAIAKKLPK 169 (170)
T ss_dssp EECCTTTCTTHHHHHHHHHHTSCC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999988753
No 52
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=2.8e-21 Score=189.78 Aligned_cols=159 Identities=21% Similarity=0.216 Sum_probs=122.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
+...+|+++|++|+|||||+++|+.... ....+.|+........+..++..+.+++|||||++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~-----------------~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLF-----------------PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSC-----------------CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCC-----------------CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 4568999999999999999999987321 11122344434333444455556899999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCT 236 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~ 236 (646)
+|...+..+++.+|++|+|+|++++.+++.+..|...+. .++|+++|+||+|+.... ..+..+++.+..+.
T Consensus 87 ~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~--- 163 (201)
T 2ew1_A 87 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDM--- 163 (201)
T ss_dssp GGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC---
Confidence 999999999999999999999999988888888876554 368899999999986432 23344455555564
Q ss_pred cccccccccccchhHHHHHHHHhCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+++++||++|.||++++++|.+.+.
T Consensus 164 ~~~~~Sa~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 164 YYLETSAKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999988764
No 53
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.86 E-value=1.8e-21 Score=188.08 Aligned_cols=169 Identities=19% Similarity=0.197 Sum_probs=114.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEE-EecCCCeEEEEEeCCCC
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRY-VFENEPFCLNLIDTPGH 161 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~-~~~~~~~~l~liDTPG~ 161 (646)
+...+|+++|++|+|||||++.+.+...... .... .........|+........+ ..++..+.+++|||||+
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~---~~~~----~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 84 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGR---KGEM----VSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQ 84 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGG---BCCC----EEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccc---cccc----cccccccccceeeeecccccccccCCceEEEEEeCCCh
Confidence 4467999999999999999966644211100 0000 00001122244333322222 23445788999999999
Q ss_pred ccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH---------cCCCeEEEEeccCCCCCCchHHHHHHHHHhC
Q 043429 162 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---------NNLEIIPVLNKIDLPGAEPSRVAREIEEVIG 232 (646)
Q Consensus 162 ~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~---------~~~piIvViNKiDl~~~~~~~~~~el~~~l~ 232 (646)
++|...+..+++.+|++|+|+|++++...++...+..... .++|+++|+||+|+.+....+..+++.+.++
T Consensus 85 ~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~ 164 (198)
T 3t1o_A 85 VFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEG 164 (198)
T ss_dssp CSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcC
Confidence 9999999999999999999999997655544443332222 4789999999999987654444444443334
Q ss_pred CCcccccccccccccchhHHHHHHHHhC
Q 043429 233 LDCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 233 ~~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
. .+++++||++|.|+++++++|.+.+
T Consensus 165 ~--~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 165 K--FPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp C--SCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred C--ceEEEEecCCCcCHHHHHHHHHHHH
Confidence 3 2699999999999999999998765
No 54
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.86 E-value=3.9e-21 Score=187.68 Aligned_cols=158 Identities=17% Similarity=0.220 Sum_probs=121.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
+...+|+|+|++|+|||||+++|+...... ....|+........+..++..+.+++|||||+.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTP-----------------AFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCS-----------------CCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC-----------------CcCCccceeEEEEEEEECCeEEEEEEEECCCch
Confidence 346799999999999999999998632110 011122222222333444557899999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCT 236 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~ 236 (646)
+|...+..+++.+|++|+|+|++++.+++....|...+. .+.|+++|+||+|+.... ..+..+++.+.+++
T Consensus 69 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--- 145 (203)
T 1zbd_A 69 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGF--- 145 (203)
T ss_dssp GGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTC---
T ss_pred hhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCC---
Confidence 999999999999999999999999888888877876655 378999999999997643 23445566666775
Q ss_pred cccccccccccchhHHHHHHHHhC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++++||++|.|+++++++|.+.+
T Consensus 146 ~~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 146 EFFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp EEEECBTTTTBSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998765
No 55
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.86 E-value=2.6e-21 Score=184.15 Aligned_cols=159 Identities=19% Similarity=0.181 Sum_probs=119.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecC-CCeEEEEEeCCCCc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFEN-EPFCLNLIDTPGHV 162 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~-~~~~l~liDTPG~~ 162 (646)
+..+|+++|++|+|||||+++|+..... .+..+ |+........+..++ ..+.+++|||||+.
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~---------------~~~~~--t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 67 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFG---------------KQYKQ--TIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTT---------------HHHHH--TTTSSEEEEEEEETTTEEEEEEEEECTTCC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCC---------------CCCCC--ceeEEEEEEEEEeCCCCEEEEEEEECCCCc
Confidence 3469999999999999999999873211 11111 222222222233333 35899999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc------CCC-eEEEEeccCCCCCC--chHHHHHHHHHhCC
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN------NLE-IIPVLNKIDLPGAE--PSRVAREIEEVIGL 233 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~------~~p-iIvViNKiDl~~~~--~~~~~~el~~~l~~ 233 (646)
+|...+..+++.+|++++|+|++++.+++....|...+.. +.| +++|+||+|+.+.. ..+..+++.+.++.
T Consensus 68 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 147 (178)
T 2hxs_A 68 IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGF 147 (178)
T ss_dssp TTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTC
T ss_pred cccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCC
Confidence 9999999999999999999999998888888777766543 677 79999999986532 23444556666665
Q ss_pred CcccccccccccccchhHHHHHHHHhCCC
Q 043429 234 DCTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 234 ~~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+++++||++|.|+++++++|.+.+..
T Consensus 148 ---~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 148 ---SSHFVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp ---EEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred ---cEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999988754
No 56
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.86 E-value=2.1e-21 Score=188.46 Aligned_cols=162 Identities=13% Similarity=0.182 Sum_probs=117.6
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCC
Q 043429 81 PASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPG 160 (646)
Q Consensus 81 ~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG 160 (646)
+.....+|+|+|++|+|||||+++|+...... . ....|+......+. ...+.+++|||||
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~--------------~--~~~~t~~~~~~~~~----~~~~~~~i~Dt~G 72 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSS--------------K--HITATVGYNVETFE----KGRVAFTVFDMGG 72 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC--------------------CCCCCSSEEEEEEE----ETTEEEEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcc--------------c--ccccccceeEEEEE----eCCEEEEEEECCC
Confidence 34456899999999999999999997622111 0 01123433333333 3489999999999
Q ss_pred CccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-c-----------CCCeEEEEeccCCCCCCc-hHHHHHH
Q 043429 161 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-N-----------NLEIIPVLNKIDLPGAEP-SRVAREI 227 (646)
Q Consensus 161 ~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-~-----------~~piIvViNKiDl~~~~~-~~~~~el 227 (646)
+.+|...+..+++.+|++|+|+|++++.++.....|...+. . ++|+++|+||+|+..... +++.+.+
T Consensus 73 ~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~ 152 (199)
T 4bas_A 73 AKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEIL 152 (199)
T ss_dssp SGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHh
Confidence 99999999999999999999999999988888766655443 2 899999999999976643 2222222
Q ss_pred HH--HhCCCcccccccccccccchhHHHHHHHHhCCC
Q 043429 228 EE--VIGLDCTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 228 ~~--~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
.. .......+++++||++|.||++++++|.+.+..
T Consensus 153 ~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 153 DLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp THHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred cchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence 21 112234478999999999999999999987643
No 57
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.86 E-value=1.9e-21 Score=185.13 Aligned_cols=159 Identities=21% Similarity=0.232 Sum_probs=121.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
+...+|+++|++|+|||||+++|+.... ..+...+++..... ..+..++..+.+++|||||+.
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~---------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~ 69 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTF---------------SGSYITTIGVDFKI--RTVEINGEKVKLQIWDTAGQE 69 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC------------------CCTTTBSEEEEE--EEEEETTEEEEEEEEEETTGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCC---------------CCccCCCceeEEEE--EEEEECCEEEEEEEEcCCCch
Confidence 4568999999999999999999975211 11122233333332 233344456899999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc---CCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCccc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN---NLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTN 237 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~---~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~ 237 (646)
++...+..+++.+|++++|+|++++.+++....|...+.. ++|+++|+||+|+.... ......++...++. +
T Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~ 146 (181)
T 3tw8_B 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGI---Q 146 (181)
T ss_dssp GCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC---C
T ss_pred hhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCC---e
Confidence 9999999999999999999999999888888877766553 58999999999987543 23344555566665 5
Q ss_pred ccccccccccchhHHHHHHHHhCC
Q 043429 238 AILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
++++||++|.|+++++++|.+.+.
T Consensus 147 ~~~~Sa~~~~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 147 LFETSAKENVNVEEMFNCITELVL 170 (181)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999988664
No 58
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.86 E-value=1.3e-21 Score=186.46 Aligned_cols=159 Identities=17% Similarity=0.222 Sum_probs=107.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEec-CCCeEEEEEeCCCC
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFE-NEPFCLNLIDTPGH 161 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~-~~~~~l~liDTPG~ 161 (646)
+...+|+++|++|+|||||+++|+..... ..... |+........+..+ +..+.+++|||||+
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 68 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYS---------------QQYKA--TIGADFLTKEVTVDGDKVATMQVWDTAGQ 68 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCC---------------TTC-----CCCSCEEEEECCSSSCCEEEEEECCC--
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCC---------------cccCC--ccceEEEEEEEEEcCCcEEEEEEEECCCC
Confidence 34679999999999999999999873211 11111 22222222333333 34678999999999
Q ss_pred ccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH--------cCCCeEEEEeccCCCCCC---chHHHHHHHHH
Q 043429 162 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--------NNLEIIPVLNKIDLPGAE---PSRVAREIEEV 230 (646)
Q Consensus 162 ~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~--------~~~piIvViNKiDl~~~~---~~~~~~el~~~ 230 (646)
.+|...+..+++.+|++|+|+|++++.+++....|...+. .++|+++|+||+|+.... ..+...++.+.
T Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~ 148 (182)
T 1ky3_A 69 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS 148 (182)
T ss_dssp --------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH
T ss_pred hHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh
Confidence 9999999999999999999999999988888887765543 578999999999985432 23333444442
Q ss_pred hCCCcccccccccccccchhHHHHHHHHhC
Q 043429 231 IGLDCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 231 l~~~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
. ...+++++||++|.|+++++++|.+.+
T Consensus 149 ~--~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 149 L--GDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp T--TSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred c--CCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 2 234699999999999999999998765
No 59
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.86 E-value=6.5e-21 Score=179.53 Aligned_cols=158 Identities=23% Similarity=0.261 Sum_probs=119.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|++|+|||||+++|+..... .. .....|.+. ....+...+..+.+.+|||||+.++
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~-----------~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~Dt~G~~~~ 68 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFD-----------PN--INPTIGASF----MTKTVQYQNELHKFLIWDTAGLERF 68 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC-----------TT--CCCCCSEEE----EEEEEEETTEEEEEEEEEECCSGGG
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCC-----------CC--CCCceeEEE----EEEEEEECCeEEEEEEEcCCCchhh
Confidence 469999999999999999999873211 00 111222222 2233344455688999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcccc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~i 238 (646)
...+..+++.+|++++|+|++++.+.+....|...+. .++|+++|+||+|+.... ..+..+++.+.++. ++
T Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~---~~ 145 (170)
T 1z0j_A 69 RALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHA---IF 145 (170)
T ss_dssp GGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC---EE
T ss_pred hcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCC---EE
Confidence 9999999999999999999999888888777765554 367899999999996532 23444555555554 58
Q ss_pred cccccccccchhHHHHHHHHhCCC
Q 043429 239 ILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+++||++|.|+++++++|.+.++.
T Consensus 146 ~~~Sa~~~~~i~~l~~~i~~~i~~ 169 (170)
T 1z0j_A 146 VETSAKNAININELFIEISRRIPS 169 (170)
T ss_dssp EECBTTTTBSHHHHHHHHHHHCCC
T ss_pred EEEeCCCCcCHHHHHHHHHHHHhc
Confidence 999999999999999999998753
No 60
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.86 E-value=1.9e-21 Score=183.44 Aligned_cols=158 Identities=23% Similarity=0.214 Sum_probs=113.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
...+|+++|++|+|||||+++|+..... + ....|+........+..++..+.+.+|||||+.+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~-----------~------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 67 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFN-----------D------KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCC-----------S------SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-----------c------CCCCccceEEEEEEEEECCEEEEEEEEECCCcHh
Confidence 3469999999999999999999873211 0 1111333333333444556678999999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCccc
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTN 237 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~ 237 (646)
+...+..+++.+|++++|+|++++.+++....|...+. .++|+++|+||+|+.... ..+..+++.+.++. +
T Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~ 144 (170)
T 1z08_A 68 FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGA---K 144 (170)
T ss_dssp -----CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC---E
T ss_pred hhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCC---e
Confidence 99988899999999999999999888888877765543 478999999999986532 23334555555554 5
Q ss_pred ccccccccccchhHHHHHHHHhCC
Q 043429 238 AILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
++++||++|.|+++++++|.+.++
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 145 HYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHHh
Confidence 899999999999999999988753
No 61
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=5.9e-21 Score=181.98 Aligned_cols=161 Identities=15% Similarity=0.168 Sum_probs=114.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
+...+|+++|++|+|||||+++|+...... ..... |+........+..++..+.+++|||||+.
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~~--t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 71 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLA--------------GTFIS--TVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCC--------------CCCCC--CCSCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCC--------------CCcCC--ceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 345799999999999999999998732110 01111 22223333333445556899999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCT 236 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~ 236 (646)
+|...+..+++.+|++++|+|++++.+++....|...+. .++|+++|+||+|+.... ..+..+++.+.++.
T Consensus 72 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--- 148 (180)
T 2g6b_A 72 RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGL--- 148 (180)
T ss_dssp -------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCC---
Confidence 999999999999999999999999888888777765544 478999999999997543 23344556666665
Q ss_pred cccccccccccchhHHHHHHHHhCCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+++++||++|.|+++++++|.+.+..
T Consensus 149 ~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 149 PFMETSAKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999987643
No 62
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.86 E-value=4e-21 Score=186.05 Aligned_cols=159 Identities=21% Similarity=0.222 Sum_probs=120.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH 161 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~ 161 (646)
.+...+|+|+|++|+|||||+++|+...... ....|+........+...+..+.+++|||||+
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~-----------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 84 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSH-----------------DSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 84 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCS-----------------SCCCCSSEEEEEEEEEETTEEEEEEEEEESCC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCC-----------------CCCCccceeEEEEEEEECCEEEEEEEEeCCCc
Confidence 3556899999999999999999998732111 01113332333333444556789999999999
Q ss_pred ccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCc
Q 043429 162 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDC 235 (646)
Q Consensus 162 ~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~ 235 (646)
.+|...+..+++.+|++|+|+|++++.+++....|...+. .++|+++|+||+|+.... ..+...++....+.
T Consensus 85 ~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-- 162 (193)
T 2oil_A 85 ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGL-- 162 (193)
T ss_dssp CTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC--
T ss_pred hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCC--
Confidence 9999999999999999999999999888888777776654 378899999999986532 23334445555554
Q ss_pred ccccccccccccchhHHHHHHHHhC
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++++||++|.|+++++++|.+.+
T Consensus 163 -~~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 163 -LFLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp -EEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998765
No 63
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.85 E-value=4.5e-21 Score=180.90 Aligned_cols=156 Identities=21% Similarity=0.213 Sum_probs=110.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
+.+|+++|++|+|||||+++|+....... .....+ .......+..++..+.+.+|||||+.++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~---------------~~~~~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 64 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHA---------------HEMENS--EDTYERRIMVDKEEVTLIVYDIWEQGDA 64 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-----------------------------CEEEEEEEETTEEEEEEEECCCCC---
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccc---------------ccCCCc--CCeeeEEEEECCeEEEEEEEECCCcccc
Confidence 46999999999999999999975322110 011112 2223333445566789999999999998
Q ss_pred hh-hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc-----CCCeEEEEeccCCCCC--CchHHHHHHHHHhCCCcc
Q 043429 165 SY-EVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPGA--EPSRVAREIEEVIGLDCT 236 (646)
Q Consensus 165 ~~-~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~-----~~piIvViNKiDl~~~--~~~~~~~el~~~l~~~~~ 236 (646)
.. ....+++.+|++++|+|+++..+++....|...+.. ++|+++|+||+|+.+. ...+..+++.+.++.
T Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--- 141 (169)
T 3q85_A 65 GGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSC--- 141 (169)
T ss_dssp -----CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC---
T ss_pred chhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCC---
Confidence 76 566678999999999999998888888777766543 7999999999998643 234445566666665
Q ss_pred cccccccccccchhHHHHHHHHhC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++++||++|.|++++|+++.+.+
T Consensus 142 ~~~~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 142 KHIETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cEEEecCccCCCHHHHHHHHHHHH
Confidence 589999999999999999998765
No 64
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.85 E-value=1.4e-21 Score=187.19 Aligned_cols=159 Identities=16% Similarity=0.188 Sum_probs=96.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
+...+|+++|++|+|||||+++|+.... ..+..+.++.. .....+..++..+.+++|||||+.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~---------------~~~~~~t~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAF---------------NSTFISTIGID--FKIRTIELDGKRIKLQIWDTAGQE 68 (183)
T ss_dssp SEEEEEEEECCCCC-------------------------------CHHHHHCEE--EEEEEEEETTEEEEEEEEEC----
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC---------------CCCCCCcccce--eEEEEEEECCEEEEEEEEcCCCCh
Confidence 3467999999999999999999976211 11112222222 222333344556899999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc----CCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCT 236 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~----~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~ 236 (646)
+|...+..+++.+|++|+|+|++++.+++....|...+.. ++|+++|+||+|+.+.. ..+..+++.+.++.
T Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~--- 145 (183)
T 2fu5_C 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGI--- 145 (183)
T ss_dssp -----CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTC---
T ss_pred hhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCC---
Confidence 9998888999999999999999998888888777765542 78999999999997543 23444566666665
Q ss_pred cccccccccccchhHHHHHHHHhCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+++++||++|.|+++++++|.+.+.
T Consensus 146 ~~~~~Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 146 KFMETSAKANINVENAFFTLARDIK 170 (183)
T ss_dssp EEEECCC---CCHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999988663
No 65
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.85 E-value=3.4e-21 Score=186.55 Aligned_cols=158 Identities=22% Similarity=0.226 Sum_probs=119.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
....+|+++|++|+|||||+++|+...... ... .|+........+..++..+.+++|||||+.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~---------------~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 81 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQP---------------VHD--LTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC----------------------CCSSEEEEEEEETTEEEEEEEECCTTGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCC---------------CCC--CcccceeEEEEEEECCEEEEEEEEECCCch
Confidence 345799999999999999999998732111 111 122222222333444556899999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCT 236 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~ 236 (646)
+|...+..+++.+|++|+|+|+++..+++....|...+. .++|+++|+||+|+.... ..+..+++.+..+.
T Consensus 82 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~--- 158 (191)
T 2a5j_A 82 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGL--- 158 (191)
T ss_dssp GTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC---
T ss_pred hhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCC---
Confidence 999999999999999999999999888888877776654 278999999999996432 23344556666665
Q ss_pred cccccccccccchhHHHHHHHHhC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++++||++|.||++++++|.+.+
T Consensus 159 ~~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 159 IFMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp EEEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998765
No 66
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.85 E-value=2.6e-21 Score=187.87 Aligned_cols=159 Identities=19% Similarity=0.228 Sum_probs=116.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
+...+|+++|++|+|||||+++|+..... ..... |+........+..++..+.+++|||||+.
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~---------------~~~~~--t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFC---------------EACKS--TVGVDFKIKTVELRGKKIRLQIWDTAGQE 86 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC-----------------------C--CTTEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC---------------cCCCC--ccceeEEEEEEEECCeEEEEEEEeCCCcH
Confidence 44579999999999999999999752111 11111 22222222333344556899999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCT 236 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~ 236 (646)
+|...+..+++.+|++|+|+|++++.+++.+..|...+. .++|+++|+||+|+.... ..+..+++.+.+ ...
T Consensus 87 ~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~--~~~ 164 (192)
T 2il1_A 87 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQI--TGM 164 (192)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTS--TTC
T ss_pred HHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhc--CCC
Confidence 999999999999999999999999988888888866554 378999999999986532 223334444332 234
Q ss_pred cccccccccccchhHHHHHHHHhC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++++||++|.|+++++++|.+.+
T Consensus 165 ~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 165 RFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998765
No 67
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.85 E-value=9.3e-21 Score=177.82 Aligned_cols=150 Identities=19% Similarity=0.226 Sum_probs=113.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
||+++|++|+|||||+++|+..... +. ..|+......+.+ .++.+++|||||+.++..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~-----------~~-------~~t~~~~~~~~~~----~~~~~~i~Dt~G~~~~~~ 59 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV-----------TT-------IPTIGFNVETVEY----KNISFTVWDVGGQDKIRP 59 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS-----------CC-------CCCSSCCEEEEEC----SSCEEEEEECCCCGGGHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC-----------cc-------cCcCceeEEEEEE----CCEEEEEEEcCCChhhHH
Confidence 7999999999999999999873211 10 1133333333333 378999999999999999
Q ss_pred hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc-----CCCeEEEEeccCCCCCCchHHHHHHHHHhCC-----Ccc
Q 043429 167 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPGAEPSRVAREIEEVIGL-----DCT 236 (646)
Q Consensus 167 ~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~-----~~piIvViNKiDl~~~~~~~~~~el~~~l~~-----~~~ 236 (646)
.+..+++.+|++++|+|++++.+++....|...... +.|+++|+||+|+.+.... +++.+.++. ...
T Consensus 60 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~ 136 (164)
T 1r8s_A 60 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRHRNW 136 (164)
T ss_dssp HHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCSSCCE
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCH---HHHHHHhCcccccCccE
Confidence 999999999999999999998888777766655432 7899999999999765432 233333332 123
Q ss_pred cccccccccccchhHHHHHHHHhCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+++++||++|.|+++++++|.+.+.
T Consensus 137 ~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 137 YIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred EEEEcccCCCcCHHHHHHHHHHHHh
Confidence 6899999999999999999998874
No 68
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.85 E-value=3.1e-21 Score=188.53 Aligned_cols=166 Identities=20% Similarity=0.280 Sum_probs=120.8
Q ss_pred cccCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEE
Q 043429 77 LLKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLI 156 (646)
Q Consensus 77 ~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~li 156 (646)
...++..+..+|+++|++|+|||||+++|+..... .... .|+.... ...+..++..+.++||
T Consensus 16 ~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-----------~~~~------~t~~~~~-~~~~~~~~~~~~~~l~ 77 (201)
T 3oes_A 16 FQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFS-----------EGYD------PTVENTY-SKIVTLGKDEFHLHLV 77 (201)
T ss_dssp -------CEEEEEEEESTTSSHHHHHHHHHHSCCC-----------SCCC------CCSEEEE-EEEEC----CEEEEEE
T ss_pred CCCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCC-----------CCCC------CccceEE-EEEEEECCEEEEEEEE
Confidence 34455567789999999999999999999873211 1010 1222221 2223334457899999
Q ss_pred eCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc-----CCCeEEEEeccCCCCCC--chHHHHHHHH
Q 043429 157 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPGAE--PSRVAREIEE 229 (646)
Q Consensus 157 DTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~-----~~piIvViNKiDl~~~~--~~~~~~el~~ 229 (646)
||||+.+|...+..+++.+|++++|+|+++..+++....|...+.. ++|+++|+||+|+.... .....+++..
T Consensus 78 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~ 157 (201)
T 3oes_A 78 DTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAE 157 (201)
T ss_dssp EECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred ECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHH
Confidence 9999999999999999999999999999998888888888776643 78999999999986433 2344556666
Q ss_pred HhCCCcccccccccccccchhHHHHHHHHhCCCC
Q 043429 230 VIGLDCTNAILCSAKEGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 230 ~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P 263 (646)
.++. +++++||++|.|++++|++|.+.+...
T Consensus 158 ~~~~---~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 158 SWGA---TFMESSARENQLTQGIFTKVIQEIARV 188 (201)
T ss_dssp HHTC---EEEECCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HhCC---eEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 6765 589999999999999999999877543
No 69
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.85 E-value=1.1e-20 Score=181.07 Aligned_cols=156 Identities=21% Similarity=0.255 Sum_probs=119.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
...+|+++|++|+|||||+++|+..... .... .|+.... ...+..++..+.+++|||||+.+
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~-----------~~~~------~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 78 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFV-----------DDYD------PTIEDSY-LKHTEIDNQWAILDVLDTAGQEE 78 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC-----------SCCC------TTCCEEE-EEEEEETTEEEEEEEEECCSCGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC-----------CCCC------CCcccee-EEEEEeCCcEEEEEEEECCCchh
Confidence 4579999999999999999999863111 1111 1222222 22333455567889999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCC--CchHHHHHHHHHhCCCcc
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGA--EPSRVAREIEEVIGLDCT 236 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~--~~~~~~~el~~~l~~~~~ 236 (646)
|...+..+++.+|++++|+|++++.+++....|...+. .++|+++|+||+|+.+. ...+..+++.+.++.
T Consensus 79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~--- 155 (183)
T 3kkq_A 79 FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNI--- 155 (183)
T ss_dssp GCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTC---
T ss_pred hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCC---
Confidence 99999999999999999999999988888877765543 47899999999998753 234445666677764
Q ss_pred cccccccc-cccchhHHHHHHHHhC
Q 043429 237 NAILCSAK-EGIGINEILNAIVKRI 260 (646)
Q Consensus 237 ~i~~vSAk-~g~GV~eLl~~I~~~i 260 (646)
+++++||+ +|.|++++|++|.+.+
T Consensus 156 ~~~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 156 PYIETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp CEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred eEEEeccCCCCCCHHHHHHHHHHHH
Confidence 49999999 9999999999998764
No 70
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.85 E-value=4.8e-21 Score=183.18 Aligned_cols=159 Identities=21% Similarity=0.203 Sum_probs=119.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
.+..+|+++|++|+|||||+++|+..... .... . |..... ...+..++..+.+++|||||+.
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~-----------~~~~--~----t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~ 65 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFV-----------DSYD--P----TIENTF-TKLITVNGQEYHLQLVDTAGQD 65 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCC-----------SCCC--T----TCCEEE-EEEEEETTEEEEEEEEECCCCC
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCC-----------CCCC--C----CccccE-EEEEEECCEEEEEEEEeCCCch
Confidence 44679999999999999999999863211 1111 1 222111 2223344556889999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDC 235 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~ 235 (646)
+|...+..+++.+|++++|+|+++..+++....|...+. .++|+++|+||+|+.... ..+..+++.+.++.
T Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-- 143 (181)
T 3t5g_A 66 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNA-- 143 (181)
T ss_dssp TTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTC--
T ss_pred hhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCC--
Confidence 998888899999999999999999888888877765542 378999999999986543 23445566666665
Q ss_pred ccccccccccccchhHHHHHHHHhCCC
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+++++||++|.|++++|++|.+.+..
T Consensus 144 -~~~~~Sa~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 144 -AFLESSAKENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp -EEEECCTTSHHHHHHHHHHHHHHHHT
T ss_pred -cEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 59999999999999999999987754
No 71
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.85 E-value=4.1e-21 Score=182.81 Aligned_cols=159 Identities=20% Similarity=0.280 Sum_probs=118.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH 161 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~ 161 (646)
.....+|+++|++|+|||||+++|+..... .... .|+..... ..+..++..+.+++|||||+
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-----------~~~~------~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~ 67 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFV-----------SDYD------PTIEDSYT-KICSVDGIPARLDILDTAGQ 67 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCC-----------SSCC------TTCCEEEE-EEEEETTEEEEEEEEECCCT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCc-----------cccC------CCcCceEE-EEEEECCEEEEEEEEECCCc
Confidence 345689999999999999999999874211 1000 12221111 22334445678999999999
Q ss_pred ccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHH-H----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCC
Q 043429 162 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLD 234 (646)
Q Consensus 162 ~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~-~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~ 234 (646)
.+|...+..+++.+|++++|+|+++..++.....|...+ . .++|+++|+||+|+.... ..+..+++....+.
T Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~- 146 (181)
T 2fn4_A 68 EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHV- 146 (181)
T ss_dssp TTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-
T ss_pred hhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC-
Confidence 999999999999999999999999988877777766554 2 478999999999986532 23334455555554
Q ss_pred cccccccccccccchhHHHHHHHHhCC
Q 043429 235 CTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 235 ~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+++++||++|.|+++++++|.+.+.
T Consensus 147 --~~~~~Sa~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 147 --AYFEASAKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp --EEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred --eEEEecCCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999988764
No 72
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.85 E-value=6.7e-21 Score=181.00 Aligned_cols=157 Identities=17% Similarity=0.222 Sum_probs=118.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|++|+|||||+++|+..... ..... |+........+..++..+.+.+|||||+.+|.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~---------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 77 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFD---------------NTYQA--TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 77 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC---------------SSCCC--CCSEEEEEEEEEETTEEEEEEEEEECCSGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC---------------CCCCC--ceeeEEEEEEEEECCeEEEEEEEECCCcHHHH
Confidence 69999999999999999999863211 11112 22222333334445556899999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCccccc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTNAI 239 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~i~ 239 (646)
..+..+++.+|++++|+|++++.+++....|...+. .++|+++|+||+|+.... ..+...++....+. +++
T Consensus 78 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~ 154 (179)
T 2y8e_A 78 SLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV---MFI 154 (179)
T ss_dssp GGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTC---EEE
T ss_pred HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCC---eEE
Confidence 999999999999999999999888887777765543 378999999999986432 22333444455554 589
Q ss_pred ccccccccchhHHHHHHHHhCCC
Q 043429 240 LCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 240 ~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
++||++|.|+++++++|.+.++.
T Consensus 155 ~~Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 155 ETSAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp EEBTTTTBSHHHHHHHHHHTCC-
T ss_pred EEeCCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999988754
No 73
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=2.1e-21 Score=188.02 Aligned_cols=158 Identities=19% Similarity=0.228 Sum_probs=124.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
+...||+|+|++|+|||||+++|+...... ....|+........+...+..+.++||||||+.
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 83 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTP-----------------AFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCC-----------------CEEEEETTTEEEEEEEETTTTEEEEEECHHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCc-----------------ccCCCeeeEEEEEEEEECCEEEEEEEEeCCChH
Confidence 346799999999999999999998732110 111133333333444456678999999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc----CCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCT 236 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~----~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~ 236 (646)
+|...+..+++.+|++|+|+|+++..+++....|...+.. ++|+++|+||+|+.... ..+..+++.+.++.
T Consensus 84 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--- 160 (191)
T 3dz8_A 84 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGF--- 160 (191)
T ss_dssp HCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC---
Confidence 9999999999999999999999998888888888776653 78999999999986532 34445566666776
Q ss_pred cccccccccccchhHHHHHHHHhC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++++||++|.||++++++|.+.+
T Consensus 161 ~~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 161 DFFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998865
No 74
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.85 E-value=7.3e-21 Score=186.33 Aligned_cols=159 Identities=18% Similarity=0.195 Sum_probs=121.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
+...+|+|+|++|+|||||+++|+..... .+..+ |+........+..++..+.+++|||||+.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~---------------~~~~~--t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYT---------------NDYIS--TIGVDFKIKTVELDGKTVKLQIWDTAGQE 68 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCC---------------TTCCC--SSCCCEEEEEEEETTEEEEEEEECCTTTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC---------------CCCCC--cccceeEEEEEEECCEEEEEEEEeCCChH
Confidence 45679999999999999999999873211 11112 22222222333445556899999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCT 236 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~ 236 (646)
+|...+..+++.+|++|+|+|++++.+++.+..|...+. .++|+++|+||+|+.... ..+...++.+..+.
T Consensus 69 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--- 145 (206)
T 2bcg_Y 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKM--- 145 (206)
T ss_dssp TTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC---
T ss_pred HHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC---
Confidence 999999999999999999999999988888888876554 368999999999997643 23344556555554
Q ss_pred cccccccccccchhHHHHHHHHhCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+++++||++|.||++++++|.+.+.
T Consensus 146 ~~~~~Sa~~g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 146 PFLETSALDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999988663
No 75
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.85 E-value=3.1e-21 Score=180.30 Aligned_cols=154 Identities=25% Similarity=0.327 Sum_probs=109.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc-
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD- 163 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d- 163 (646)
+++|+++|++|+|||||+++|+...... .+...++|.......+.+. +..+.+|||||+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~----~~~~~l~Dt~G~~~~ 62 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAV--------------VADVPGVTRDLKEGVVETD----RGRFLLVDTGGLWSG 62 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-------------------------CCEEEEEEET----TEEEEEEECGGGCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeee--------------ccCCCCceecceEEEEEeC----CceEEEEECCCCCCc
Confidence 4799999999999999999998732111 1223445555444444433 56899999999987
Q ss_pred ------chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCccc
Q 043429 164 ------FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTN 237 (646)
Q Consensus 164 ------f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~ 237 (646)
+...+..+++.+|++++|+|++++.+.............+.|+++|+||+|+.... +..+++. .++. .+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~~~~~~~-~~~~--~~ 137 (161)
T 2dyk_A 63 DKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHE--LYLGPLY-GLGF--GD 137 (161)
T ss_dssp SSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGG--GGCGGGG-GGSS--CS
T ss_pred cchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccch--HhHHHHH-hCCC--CC
Confidence 34456678899999999999999877665544444455789999999999986542 1122332 2333 36
Q ss_pred ccccccccccchhHHHHHHHHhCC
Q 043429 238 AILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
++++||++|.|+++++++|.+.+|
T Consensus 138 ~~~~Sa~~~~gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 138 PIPTSSEHARGLEELLEAIWERLP 161 (161)
T ss_dssp CEECBTTTTBSHHHHHHHHHHHCC
T ss_pred eEEEecccCCChHHHHHHHHHhCc
Confidence 899999999999999999999875
No 76
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.85 E-value=1e-20 Score=178.56 Aligned_cols=157 Identities=17% Similarity=0.143 Sum_probs=116.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
+..+|+++|++|+|||||+++|+..... ....|+......+.+. .+.+++|||||+.+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~------------------~~~~t~~~~~~~~~~~----~~~~~~~Dt~G~~~ 63 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV------------------TTIPTIGFNVETVTYK----NLKFQVWDLGGLTS 63 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC------------------CCCCCSSEEEEEEEET----TEEEEEEEECCCGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC------------------CcCCcCccceEEEEEC----CEEEEEEECCCChh
Confidence 3479999999999999999999863210 0112333333344443 78999999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCCc-hHHHHHHHHH-hCCCcc
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAEP-SRVAREIEEV-IGLDCT 236 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~~-~~~~~el~~~-l~~~~~ 236 (646)
+...+..+++.+|++++|+|++++.++.....|..... .++|+++|+||+|+.+... .++.+++... ......
T Consensus 64 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 143 (171)
T 1upt_A 64 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKW 143 (171)
T ss_dssp GGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCE
T ss_pred hhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCce
Confidence 99999999999999999999999888877766655443 4789999999999976543 2222222111 111123
Q ss_pred cccccccccccchhHHHHHHHHhCCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+++++||++|.|+++++++|.+.++.
T Consensus 144 ~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 144 QIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 68999999999999999999987643
No 77
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.85 E-value=3.8e-21 Score=187.96 Aligned_cols=160 Identities=18% Similarity=0.180 Sum_probs=119.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
+...+|+|+|++|+|||||+++|+..... . ....|+........+..++..+.++||||||+.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~---------------~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFS---------------N--QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCC---------------S--SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSG
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCC---------------C--CCCCcccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 34679999999999999999999873211 0 111133333333444455567899999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH--------cCCCeEEEEeccCCCCCC-chHHHHHHHHHhCC
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--------NNLEIIPVLNKIDLPGAE-PSRVAREIEEVIGL 233 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~--------~~~piIvViNKiDl~~~~-~~~~~~el~~~l~~ 233 (646)
+|...+..+++.+|++|+|+|++++.+++....|...+. .++|+++|+||+|+.... ..+...++... .
T Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--~ 146 (207)
T 1vg8_A 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS--K 146 (207)
T ss_dssp GGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH--T
T ss_pred HHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHh--c
Confidence 999988999999999999999999888888877766543 478999999999997432 22333333331 2
Q ss_pred CcccccccccccccchhHHHHHHHHhCC
Q 043429 234 DCTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 234 ~~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
...+++++||++|.|+++++++|.+.+.
T Consensus 147 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 147 NNIPYFETSAKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp TSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2346999999999999999999988663
No 78
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.85 E-value=4.5e-21 Score=187.51 Aligned_cols=151 Identities=21% Similarity=0.249 Sum_probs=109.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|++|+|||||+++|.... . .. ...|+......+.+. ++.+++|||||+.+|
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~--~---------~~-------~~~t~~~~~~~~~~~----~~~l~i~Dt~G~~~~ 82 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDR--L---------GQ-------HVPTLHPTSEELTIA----GMTFTTFDLGGHIQA 82 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC------------------------CCCCCSCEEEEET----TEEEEEEEECC----
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC--C---------Cc-------cCCCCCceeEEEEEC----CEEEEEEECCCcHhh
Confidence 3589999999999999999996521 1 00 111333333333333 589999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCCchHHHHHHHHHhCC------
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL------ 233 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~~~~~~~el~~~l~~------ 233 (646)
...+..+++.+|++++|+|++++.+++....|..... .++|+++|+||+|+.+.... +++.+.++.
T Consensus 83 ~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~ 159 (198)
T 1f6b_A 83 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISE---ERLREMFGLYGQTTG 159 (198)
T ss_dssp CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCH---HHHHHHHTCTTTCCC
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCH---HHHHHHhCccccccc
Confidence 9999999999999999999999888887777765543 47999999999999764332 233343331
Q ss_pred -----------CcccccccccccccchhHHHHHHHHhC
Q 043429 234 -----------DCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 234 -----------~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
...+++++||++|.|+++++++|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 160 KGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp SSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred ccccccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 234799999999999999999998764
No 79
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.85 E-value=3.4e-21 Score=190.30 Aligned_cols=159 Identities=21% Similarity=0.270 Sum_probs=120.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCC----------Ce
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENE----------PF 151 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~----------~~ 151 (646)
.++..+|+|+|++|+|||||+++|+..... .....|+........+..++. .+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~-----------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFN-----------------PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCC-----------------CEEEEEEEEEEEEEEEEEEC-------CCEEEE
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCC-----------------cCCCCceeEEEEEEEEEECCccccccccCceeE
Confidence 355689999999999999999999862110 111123333332223333333 67
Q ss_pred EEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCC--chHHH
Q 043429 152 CLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAE--PSRVA 224 (646)
Q Consensus 152 ~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~--~~~~~ 224 (646)
.++||||||+.+|...+..+++.+|++|+|+|+++..+++....|...+. .++|+++|+||+|+.... ..+..
T Consensus 85 ~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~ 164 (217)
T 2f7s_A 85 HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQA 164 (217)
T ss_dssp EEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHH
T ss_pred EEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHH
Confidence 89999999999999999999999999999999999888888887776554 478999999999996532 23445
Q ss_pred HHHHHHhCCCcccccccccccccchhHHHHHHHHhC
Q 043429 225 REIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 225 ~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++.+.+++ +++++||++|.||++++++|.+.+
T Consensus 165 ~~~~~~~~~---~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 165 RELADKYGI---PYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp HHHHHHTTC---CEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHCCC---cEEEEECCCCCCHHHHHHHHHHHH
Confidence 566666665 589999999999999999998765
No 80
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.85 E-value=9e-21 Score=178.01 Aligned_cols=155 Identities=21% Similarity=0.230 Sum_probs=115.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|++|+|||||+++|+..... .. ...|+.... ...+..++..+.+++|||||+.++.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~-----------~~------~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~ 65 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFV-----------EK------YDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFT 65 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC-----------CS------CCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSST
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-----------CC------CCCCccceE-EEEEEECCEEEEEEEEECCChHHHH
Confidence 58999999999999999999873110 00 011222211 2233445567889999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcccc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~i 238 (646)
..+..+++.+|++++|+|+++..+++....|...+. .++|+++|+||+|+.+.. ..+..+++.+.++ ..++
T Consensus 66 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~ 143 (167)
T 1c1y_A 66 AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWC--NCAF 143 (167)
T ss_dssp THHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT--SCEE
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHcc--CCcE
Confidence 999999999999999999999887777776655443 379999999999996532 2333444544442 3469
Q ss_pred cccccccccchhHHHHHHHHhC
Q 043429 239 ILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++||++|.|+++++++|.+.+
T Consensus 144 ~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 144 LESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998765
No 81
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.85 E-value=7.9e-21 Score=182.31 Aligned_cols=159 Identities=22% Similarity=0.207 Sum_probs=119.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
++..+|+++|++|+|||||+++|+..... ..... |+........+..++..+.+++|||||+.
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~---------------~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 70 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFK---------------DDSNH--TIGVEFGSKIINVGGKYVKLQIWDTAGQE 70 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCC---------------TTCCC--CSEEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCC---------------CCCCC--ccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 45679999999999999999999873211 11111 22222223334444556899999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCT 236 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~ 236 (646)
+|...+..+++.+|++|+|+|++++.+++....|...+. .++|+++|+||+|+.... ......++....+.
T Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--- 147 (186)
T 2bme_A 71 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENEL--- 147 (186)
T ss_dssp GGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC---
Confidence 999999999999999999999999888888887765543 478999999999986432 22333444445554
Q ss_pred cccccccccccchhHHHHHHHHhCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+++++||++|.|+++++++|.+.+.
T Consensus 148 ~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 148 MFLETSALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999987664
No 82
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.85 E-value=7.9e-21 Score=184.42 Aligned_cols=150 Identities=19% Similarity=0.201 Sum_probs=115.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|++|+|||||+++|+..... ....|+......+.+. ++.+++|||||+.++.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~~------------------~~~~t~~~~~~~~~~~----~~~~~i~Dt~G~~~~~ 81 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRLA------------------TLQPTWHPTSEELAIG----NIKFTTFDLGGHIQAR 81 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCC------------------CCCCCCSCEEEEEEET----TEEEEEEECCCSGGGT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC------------------ccccCCCCCeEEEEEC----CEEEEEEECCCCHHHH
Confidence 59999999999999999999873210 1112333333334443 5899999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCCchHHHHHHHHHhCC-------
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL------- 233 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~~~~~~~el~~~l~~------- 233 (646)
..+..+++.+|++++|+|++++.+++....|..... .+.|+++|+||+|+...... +++.+.++.
T Consensus 82 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~ 158 (190)
T 1m2o_B 82 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSE---AELRSALGLLNTTGSQ 158 (190)
T ss_dssp TSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTCSSCCC--
T ss_pred HHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCH---HHHHHHhCCccccccc
Confidence 888899999999999999999988888777765543 47999999999999764332 344444432
Q ss_pred -----CcccccccccccccchhHHHHHHHHhC
Q 043429 234 -----DCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 234 -----~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
...+++++||++|.|+++++++|.+.+
T Consensus 159 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 159 RIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp -CCSSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred cccccceEEEEEeECCcCCCHHHHHHHHHhhC
Confidence 234689999999999999999998753
No 83
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.85 E-value=1.3e-20 Score=181.36 Aligned_cols=155 Identities=20% Similarity=0.240 Sum_probs=115.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
+...+|+++|++|+|||||+++|++.. . . ... .|+......+.+. ++.+++|||||+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~--~----------~--~~~----~t~g~~~~~~~~~----~~~l~i~Dt~G~~ 71 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASED--I----------S--HIT----PTQGFNIKSVQSQ----GFKLNVWDIGGQR 71 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSC--C----------E--EEE----EETTEEEEEEEET----TEEEEEEECSSCG
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCC--C----------C--ccc----CcCCeEEEEEEEC----CEEEEEEECCCCH
Confidence 345799999999999999999996521 0 0 011 1333222333333 7899999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCCchHHHHHHHHHhCC----
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL---- 233 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~~~~~~~el~~~l~~---- 233 (646)
+|...+..+++.+|++++|+|+++..+++....|..... .+.|+++|+||+|+.+.... +++.+.++.
T Consensus 72 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~ 148 (181)
T 1fzq_A 72 KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA---SEIAEGLNLHTIR 148 (181)
T ss_dssp GGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTGGGCC
T ss_pred HHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCH---HHHHHHhCchhcc
Confidence 999999999999999999999999888877766665442 47899999999999866432 334444432
Q ss_pred -CcccccccccccccchhHHHHHHHHhCCC
Q 043429 234 -DCTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 234 -~~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
...+++++||++|.|+++++++|.+.+..
T Consensus 149 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 149 DRVWQIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp SSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred CCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 12368999999999999999999988754
No 84
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.85 E-value=8.7e-21 Score=179.76 Aligned_cols=156 Identities=18% Similarity=0.206 Sum_probs=109.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc-
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD- 163 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d- 163 (646)
..+|+++|++|+|||||+++|+...... .....|.+.. ...+..++..+.+++|||||+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~--------------~~~~~~~~~~----~~~~~~~~~~~~~~~~D~~g~~~~ 65 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERD--------------LHEQLGEDVY----ERTLTVDGEDTTLVVVDTWEAEKL 65 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-------------------CCCSSSSEE----EEEEEETTEEEEEEEECCC-----
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCcc--------------ccCcccccee----EEEEEECCEEEEEEEEecCCCCcc
Confidence 4699999999999999999997632110 1112233322 22233445567899999999988
Q ss_pred -chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc-----CCCeEEEEeccCCCCCCc--hHHHHHHHHHhCCCc
Q 043429 164 -FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPGAEP--SRVAREIEEVIGLDC 235 (646)
Q Consensus 164 -f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~-----~~piIvViNKiDl~~~~~--~~~~~el~~~l~~~~ 235 (646)
+......+++.+|++++|+|+++..+++....|...+.. ++|+++|+||+|+..... .+..+++...++.
T Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-- 143 (175)
T 2nzj_A 66 DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDC-- 143 (175)
T ss_dssp --CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTS--
T ss_pred chhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCC--
Confidence 555666788889999999999998888887777665442 799999999999976432 2333445555554
Q ss_pred ccccccccccccchhHHHHHHHHhCC
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+++++||++|.|+++++++|.+.+.
T Consensus 144 -~~~~~Sa~~g~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 144 -KFIETSATLQHNVAELFEGVVRQLR 168 (175)
T ss_dssp -EEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -eEEEEecCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999988663
No 85
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.85 E-value=7.7e-21 Score=184.08 Aligned_cols=107 Identities=24% Similarity=0.232 Sum_probs=86.8
Q ss_pred eEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH--cCCCeEEEEeccCCCCCC-chHHHHHH
Q 043429 151 FCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--NNLEIIPVLNKIDLPGAE-PSRVAREI 227 (646)
Q Consensus 151 ~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~--~~~piIvViNKiDl~~~~-~~~~~~el 227 (646)
+.++||||||+.+|...+..+++.+|++|+|+|++++.+++....|...+. .+.|+++|+||+|+.... ..+...++
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~ 172 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKY 172 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHH
Confidence 889999999999999999999999999999999999988888877766554 468999999999943222 22333444
Q ss_pred HHHhCCCcccccccccccccchhHHHHHHHHhC
Q 043429 228 EEVIGLDCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 228 ~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
.+..+. +++++||++|.|+++++++|.+.+
T Consensus 173 ~~~~~~---~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 173 AQDNNL---LFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp HHHTTC---EEEEECTTTCTTHHHHHHHHHHHH
T ss_pred HHHcCC---cEEEEecCCCCCHHHHHHHHHHHH
Confidence 444554 699999999999999999998764
No 86
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.85 E-value=1.7e-20 Score=180.10 Aligned_cols=156 Identities=22% Similarity=0.308 Sum_probs=117.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|++|+|||||+++|+..... .. ..+.+. ......+..++..+.+++|||||+.+|
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~-----------~~-----~~~t~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 65 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFV-----------DE-----YDPTIE--DSYRKQVVIDGETCLLDILDTAGQEEY 65 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCC-----------CC-----CCTTCC--EEEEEEEEETTEEEEEEEEECCCC---
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCC-----------CC-----CCCCch--heEEEEEEECCcEEEEEEEECCCcHHH
Confidence 368999999999999999999873211 00 111111 111222334455678999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc-----CCCeEEEEeccCCCCCC-chHHHHHHHHHhCCCcccc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPGAE-PSRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~-----~~piIvViNKiDl~~~~-~~~~~~el~~~l~~~~~~i 238 (646)
...+..+++.+|++++|+|+++..+++....|...+.. ++|+++|+||+|+.... ..+..+++.+.++. ++
T Consensus 66 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~---~~ 142 (189)
T 4dsu_A 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGI---PF 142 (189)
T ss_dssp CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTC---CE
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCC---eE
Confidence 99999999999999999999998888887777665543 79999999999997543 34556677777775 48
Q ss_pred cccccccccchhHHHHHHHHhCC
Q 043429 239 ILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+++||++|.|+++++++|.+.+.
T Consensus 143 ~~~Sa~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 143 IETSAKTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 87
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.85 E-value=1e-20 Score=185.78 Aligned_cols=159 Identities=20% Similarity=0.225 Sum_probs=119.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
+...+|+|+|++|+|||||+++|+..... .+... |+........+..++..+.+.||||||+.
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---------------~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFN---------------PSFIT--TIGIDFKIKTVDINGKKVKLQLWDTAGQE 80 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCC---------------CSSSC--CCSCCEEEEEEEETTEEEEEEEECCTTGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCC---------------cccCC--cccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 44679999999999999999999863211 11112 22222222333344455889999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc----CCCeEEEEeccCCCCCC-chHHHHHHHHHhCCCccc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPGAE-PSRVAREIEEVIGLDCTN 237 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~----~~piIvViNKiDl~~~~-~~~~~~el~~~l~~~~~~ 237 (646)
+|...+..+++.+|++|+|+|++++.+++....|...+.. ++|+++|+||+|+.... ..+..+++.+.+++ +
T Consensus 81 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~ 157 (213)
T 3cph_A 81 RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGI---P 157 (213)
T ss_dssp GGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTC---C
T ss_pred HHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCC---E
Confidence 9998899999999999999999998888887777665542 78999999999995432 23444566666665 5
Q ss_pred ccccccccccchhHHHHHHHHhCC
Q 043429 238 AILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
++++||++|.||++++++|.+.++
T Consensus 158 ~~~~Sa~~~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 158 FIESSAKNDDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp EEECBTTTTBSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999987663
No 88
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.85 E-value=1.6e-20 Score=182.50 Aligned_cols=159 Identities=19% Similarity=0.276 Sum_probs=114.5
Q ss_pred ccCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEe
Q 043429 78 LKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLID 157 (646)
Q Consensus 78 ~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liD 157 (646)
..+...+..+|+++|++|+|||||+++|+... +.. ...|+......+.+ .++.+++||
T Consensus 22 ~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~-----------~~~-------~~~t~~~~~~~~~~----~~~~~~i~D 79 (192)
T 2b6h_A 22 SRIFGKKQMRILMVGLDAAGKTTILYKLKLGE-----------IVT-------TIPTIGFNVETVEY----KNICFTVWD 79 (192)
T ss_dssp GGTTTTSCEEEEEEESTTSSHHHHHHHHCSSC-----------CEE-------EEEETTEEEEEEEE----TTEEEEEEE
T ss_pred HHhccCCccEEEEECCCCCCHHHHHHHHHhCC-----------ccc-------cCCcCceeEEEEEE----CCEEEEEEE
Confidence 33444556799999999999999999996521 100 11244433333433 378999999
Q ss_pred CCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCCchHHHHHHHHHhC
Q 043429 158 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIG 232 (646)
Q Consensus 158 TPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~~~~~~~el~~~l~ 232 (646)
|||+++|...+..+++.+|++++|+|++++.+++....|..... .+.|+++|+||+|+.+... .+++.+.++
T Consensus 80 t~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~ 156 (192)
T 2b6h_A 80 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP---VSELTDKLG 156 (192)
T ss_dssp CC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHTT
T ss_pred CCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC---HHHHHHHhC
Confidence 99999999999999999999999999999888887777665543 2789999999999976543 233444443
Q ss_pred CC-----cccccccccccccchhHHHHHHHHhCC
Q 043429 233 LD-----CTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 233 ~~-----~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
.. ..+++++||++|.|+++++++|.+.+.
T Consensus 157 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 157 LQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp GGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred cccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 21 235899999999999999999998764
No 89
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.85 E-value=2.1e-21 Score=192.63 Aligned_cols=160 Identities=16% Similarity=0.179 Sum_probs=123.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH 161 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~ 161 (646)
.....+|+++|++|+|||||+++|+..... . ......|+|.. ...+..++..+.+++|||||+
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~-----------~--~~~~t~~~~~~----~~~~~~~~~~~~~~i~Dt~G~ 74 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFE-----------K--KYVATLGVEVH----PLVFHTNRGPIKFNVWDTAGQ 74 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHT-----------C--EEETTTTEEEE----EEEEEETTEEEEEEEEEECSG
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCC-----------C--CCCCccceeEE----EEEEEECCEEEEEEEEeCCCh
Confidence 345579999999999999999997652110 0 01122333333 333444556789999999999
Q ss_pred ccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc---CCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcccc
Q 043429 162 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN---NLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 162 ~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~---~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i 238 (646)
.+|...+..+++.+|++++|+|++++.+++....|...+.. ++|+++|+||+|+.+........++.+..+. ++
T Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~ 151 (221)
T 3gj0_A 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL---QY 151 (221)
T ss_dssp GGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTC---EE
T ss_pred HHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCC---EE
Confidence 99999999999999999999999999999888888777665 8999999999999765543333345555554 58
Q ss_pred cccccccccchhHHHHHHHHhCC
Q 043429 239 ILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+++||++|.|+++++++|.+.+.
T Consensus 152 ~~~Sa~~~~gi~~l~~~l~~~l~ 174 (221)
T 3gj0_A 152 YDISAKSNYNFEKPFLWLARKLI 174 (221)
T ss_dssp EECBGGGTBTTTHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 90
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.84 E-value=1.5e-21 Score=186.47 Aligned_cols=160 Identities=18% Similarity=0.212 Sum_probs=112.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
...+|+++|++|+|||||+++|+...... ... .|+.... ...+..++..+.+++|||||+.+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~-----------~~~------~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~ 68 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPT-----------DYV------PTVFDNF-SANVVVNGATVNLGLWDTAGQED 68 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC---------------------------C-BCCCC-------CEEECCCC-CT
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCC-----------CCC------CeeeeeE-EEEEEECCEEEEEEEEECCCChh
Confidence 34699999999999999999998732110 000 0111000 00111233467788999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHH-HHHHHHHc---CCCeEEEEeccCCCCCCc------------hHHHHHH
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLALEN---NLEIIPVLNKIDLPGAEP------------SRVAREI 227 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~-~~~~~~~~---~~piIvViNKiDl~~~~~------------~~~~~el 227 (646)
|...+..+++.+|++++|+|++++.+++... .|...+.. ++|+++|+||+|+..... .+...++
T Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~ 148 (182)
T 3bwd_D 69 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEEL 148 (182)
T ss_dssp TTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHH
T ss_pred hhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHH
Confidence 9999999999999999999999988887776 57666654 899999999999865422 2333455
Q ss_pred HHHhCCCcccccccccccccchhHHHHHHHHhCCCC
Q 043429 228 EEVIGLDCTNAILCSAKEGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 228 ~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P 263 (646)
.+.++. .+++++||++|.|+++++++|.+.+..|
T Consensus 149 ~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 182 (182)
T 3bwd_D 149 KKLIGA--PAYIECSSKSQENVKGVFDAAIRVVLQP 182 (182)
T ss_dssp HHHHTC--SEEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred HHHcCC--CEEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence 555654 2589999999999999999999887654
No 91
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.84 E-value=1.5e-20 Score=181.80 Aligned_cols=155 Identities=19% Similarity=0.209 Sum_probs=116.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
+..+|+++|++|+|||||+++|+..... . ....|+......+.+ ..+.+++|||||+.+
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-----------~------~~~~t~~~~~~~~~~----~~~~~~l~Dt~G~~~ 79 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFN-----------E------DMIPTVGFNMRKITK----GNVTIKLWDIGGQPR 79 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-----------C------SCCCCCSEEEEEEEE----TTEEEEEEEECCSHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCC-----------C------ccCCCCceeEEEEEe----CCEEEEEEECCCCHh
Confidence 3579999999999999999999873211 0 111234333333333 378999999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCCchHHHHHHHHHhCC-----
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL----- 233 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~~~~~~~el~~~l~~----- 233 (646)
|...+..+++.+|++|+|+|+++..+++....|..... .++|+++|+||+|+...... +++.+.++.
T Consensus 80 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~ 156 (188)
T 1zd9_A 80 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE---KELIEKMNLSAIQD 156 (188)
T ss_dssp HHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTGGGCCS
T ss_pred HHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCH---HHHHHHhChhhhcc
Confidence 99999999999999999999999888887766665543 47899999999999765332 223333321
Q ss_pred CcccccccccccccchhHHHHHHHHhCCC
Q 043429 234 DCTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 234 ~~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
...+++++||++|.|+++++++|.+.+..
T Consensus 157 ~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 157 REICCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp SCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 22368999999999999999999988754
No 92
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.84 E-value=9.5e-21 Score=181.83 Aligned_cols=151 Identities=16% Similarity=0.143 Sum_probs=113.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
+..+|+++|++|+|||||+++|+.... .....|+......+.+. ++.+++|||||+.+
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~------------------~~~~~t~~~~~~~~~~~----~~~~~i~Dt~G~~~ 77 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV------------------VHTSPTIGSNVEEIVIN----NTRFLMWDIGGQES 77 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC------------------EEEECCSSSSCEEEEET----TEEEEEEEESSSGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC------------------CccCCcCceeeEEEEEC----CEEEEEEECCCCHh
Confidence 347999999999999999999987321 01111222223334443 68999999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCCchHHHHHHHHHhCC-----
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL----- 233 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~~~~~~~el~~~l~~----- 233 (646)
|...+..+++.+|++++|+|++++.+++....|..... .++|+++|+||+|+......+ ++.+.++.
T Consensus 78 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~---~i~~~~~~~~~~~ 154 (181)
T 2h17_A 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVA---EISQFLKLTSIKD 154 (181)
T ss_dssp GTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH---HHHHHTTGGGCCS
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHH---HHHHHhCcccccC
Confidence 99999999999999999999999988887766665543 578999999999997653322 33333321
Q ss_pred CcccccccccccccchhHHHHHHHHh
Q 043429 234 DCTNAILCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 234 ~~~~i~~vSAk~g~GV~eLl~~I~~~ 259 (646)
...+++++||++|.|+++++++|.+.
T Consensus 155 ~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 155 HQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred CceEEEEccCCCCcCHHHHHHHHHhh
Confidence 12368999999999999999999865
No 93
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.84 E-value=5e-21 Score=188.38 Aligned_cols=162 Identities=19% Similarity=0.190 Sum_probs=119.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
....+|+++|++|+|||||+++|+..... ..+ ..|+.... ...+..++..+.+++|||||++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~-----------~~~------~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~ 68 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFP-----------TDY------IPTVFDNF-SANVAVDGQIVNLGLWDTAGQE 68 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCC-----------SSC------CCSSCCCE-EEEEECSSCEEEEEEECCCCCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCC-----------ccC------CCccceeE-EEEEEECCEEEEEEEEECCCcH
Confidence 34579999999999999999999863211 000 01222111 2233445567899999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHH-HHHHHHHc---CCCeEEEEeccCCCCCC----------chHHHHHHH
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLALEN---NLEIIPVLNKIDLPGAE----------PSRVAREIE 228 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~-~~~~~~~~---~~piIvViNKiDl~~~~----------~~~~~~el~ 228 (646)
+|...+..+++.+|++|+|+|++++.+++... .|...+.. ++|+++|+||+|+.... ..+..+++.
T Consensus 69 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~ 148 (212)
T 2j0v_A 69 DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELR 148 (212)
T ss_dssp CCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHH
T ss_pred HHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHH
Confidence 99999999999999999999999988887775 67666553 89999999999986542 233344566
Q ss_pred HHhCCCcccccccccccccchhHHHHHHHHhCCCCC
Q 043429 229 EVIGLDCTNAILCSAKEGIGINEILNAIVKRIPPPS 264 (646)
Q Consensus 229 ~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P~ 264 (646)
+.++. .+++++||++|.|+++++++|.+.+..+.
T Consensus 149 ~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 149 KQIGA--AAYIECSSKTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp HHHTC--SEEEECCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred HHcCC--ceEEEccCCCCCCHHHHHHHHHHHHhhhh
Confidence 66664 35899999999999999999999876554
No 94
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.84 E-value=1e-20 Score=177.94 Aligned_cols=154 Identities=18% Similarity=0.176 Sum_probs=101.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|++|+|||||+++|++.... ......|.+.. ..+..++..+.+.+|||||+.+|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~-----~~~~~~~~~~~~~i~D~~g~~~~ 62 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG--------------PEAEAAGHTYD-----RSIVVDGEEASLMVYDIWEQDGG 62 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC------------------------CEEE-----EEEEETTEEEEEEEEECC-----
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc--------------CCCCccccceE-----EEEEECCEEEEEEEEECCCCccc
Confidence 358999999999999999999642110 01112222221 22334556788999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCccc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTN 237 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~ 237 (646)
...+..+++.+|++++|+|+++..+++....|...+. .++|+++|+||+|+.... ..+..+++...++. +
T Consensus 63 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~ 139 (166)
T 3q72_A 63 RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDC---K 139 (166)
T ss_dssp ----------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTC---E
T ss_pred hhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCC---c
Confidence 9999999999999999999999888888777766554 378999999999997543 23444555555554 5
Q ss_pred ccccccccccchhHHHHHHHHhC
Q 043429 238 AILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
++++||++|.|+++++++|.+.+
T Consensus 140 ~~~~Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 140 FIETSAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp EEECBGGGTBSHHHHHHHHHHHH
T ss_pred EEEeccCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998764
No 95
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.84 E-value=1.8e-20 Score=175.70 Aligned_cols=155 Identities=19% Similarity=0.237 Sum_probs=113.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|++|+|||||+++|+..... ... .. |.... ....+..++..+.+++|||||+.++
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~-----------~~~-----~~-t~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~ 65 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFV-----------EDY-----EP-TKADS-YRKKVVLDGEEVQIDILDTAGQEDY 65 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-----------SCC-----CT-TCCEE-EEEEEEETTEEEEEEEEECCC---C
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccC-----------CCC-----CC-CcceE-EEEEEEECCEEEEEEEEECCCcchh
Confidence 369999999999999999999873210 000 00 11111 1122334455688999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCccc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTN 237 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~ 237 (646)
...+..+++.+|++++|+|+++..++.....|...+. .++|+++|+||+|+.+.. ..+...++.+.++. +
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~ 142 (168)
T 1u8z_A 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNV---N 142 (168)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTC---E
T ss_pred HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCC---e
Confidence 9999999999999999999999888877777765543 279999999999986532 23334445555554 5
Q ss_pred ccccccccccchhHHHHHHHHhC
Q 043429 238 AILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
++++||++|.|+++++++|.+.+
T Consensus 143 ~~~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 143 YVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998765
No 96
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.84 E-value=1.4e-20 Score=181.85 Aligned_cols=159 Identities=21% Similarity=0.225 Sum_probs=116.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
.+..+|+++|++|+|||||+++|+..... ..... |+........+..++..+.+++|||||+.
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~---------------~~~~~--t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFP---------------DRTEA--TIGVDFRERAVDIDGERIKIQLWDTAGQE 80 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCC---------------SSCCC--CCSCCEEEEEEEETTEEEEEEEEECCCSH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCC---------------CCCCC--CcceEEEEEEEEECCEEEEEEEEECCCch
Confidence 34679999999999999999999873211 01111 22222233334445556899999999999
Q ss_pred cch-hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCC
Q 043429 163 DFS-YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLD 234 (646)
Q Consensus 163 df~-~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~ 234 (646)
+|. ..+..+++.+|++|+|+|+++..+++....|...+. .++|+++|+||+|+.... ..+..+++.+.++.
T Consensus 81 ~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~- 159 (189)
T 1z06_A 81 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSM- 159 (189)
T ss_dssp HHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-
T ss_pred hhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCC-
Confidence 988 778889999999999999999888888777765543 378999999999996532 23445566666665
Q ss_pred cccccccccccc---cchhHHHHHHHHhCC
Q 043429 235 CTNAILCSAKEG---IGINEILNAIVKRIP 261 (646)
Q Consensus 235 ~~~i~~vSAk~g---~GV~eLl~~I~~~ip 261 (646)
+++++||++| .|++++|++|.+.++
T Consensus 160 --~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 160 --PLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp --CEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred --EEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 5899999999 999999999988764
No 97
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.4e-20 Score=181.77 Aligned_cols=158 Identities=23% Similarity=0.187 Sum_probs=119.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|++|+|||||+++|+..... .+.. .|+........+..++..+.+.||||||+.+|
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~---------------~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 77 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFD---------------PELA--ATIGVDFKVKTISVDGNKAKLAIWDTAGQERF 77 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC---------------TTCC--CCCSEEEEEEEEEETTEEEEEEEEEECSSGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC---------------ccCC--CccceEEEEEEEEECCeEEEEEEEeCCCchhh
Confidence 469999999999999999999873211 0111 12222222233344555789999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc-----CCCeEEEEeccCCCCCCc-hHHHHHHHHHhCCCcccc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPGAEP-SRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~-----~~piIvViNKiDl~~~~~-~~~~~el~~~l~~~~~~i 238 (646)
...+..+++.+|++|+|+|++++.++.....|...+.. ++|+++|+||+|+..... .+...++.+..+. ++
T Consensus 78 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~ 154 (195)
T 1x3s_A 78 RTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSM---LF 154 (195)
T ss_dssp CCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTC---EE
T ss_pred hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCC---EE
Confidence 99999999999999999999998888888888766653 688999999999965432 2334445555554 58
Q ss_pred cccccccccchhHHHHHHHHhCCC
Q 043429 239 ILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+++||++|.|+++++++|.+.+..
T Consensus 155 ~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 155 IEASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEecCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999987753
No 98
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.84 E-value=1.5e-20 Score=175.95 Aligned_cols=154 Identities=23% Similarity=0.266 Sum_probs=115.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|++|+|||||+++|+..... .... .|+.. .....+..++..+.+++|||||+.++.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~-----------~~~~------~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~ 65 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFI-----------EKYD------PTIED-FYRKEIEVDSSPSVLEILDTAGTEQFA 65 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC-----------SCCC------TTCCE-EEEEEEEETTEEEEEEEEECCCTTCCH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCc-----------ccCC------CCcce-eEEEEEEECCEEEEEEEEECCCchhhH
Confidence 58999999999999999999873211 1000 01111 112233445556789999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcccc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~i 238 (646)
..+..+++.+|++++|+|++++.+.+....|...+. .+.|+++|+||+|+.... ......++.+.++. ++
T Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~ 142 (167)
T 1kao_A 66 SMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGC---PF 142 (167)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTS---CE
T ss_pred HHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCC---CE
Confidence 999999999999999999999888777766654432 379999999999986432 23344556666665 58
Q ss_pred cccccccccchhHHHHHHHHhC
Q 043429 239 ILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++||++|.|+++++++|.+.+
T Consensus 143 ~~~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 143 METSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp EEECTTCHHHHHHHHHHHHHHH
T ss_pred EEecCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999998764
No 99
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=182.61 Aligned_cols=158 Identities=16% Similarity=0.165 Sum_probs=114.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
+..+|+++|++|+|||||+++|+...... .....|+......+.+. ++.+++|||||+.+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~t~~~~~~~~~~~----~~~~~l~Dt~G~~~ 79 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQS----------------QNILPTIGFSIEKFKSS----SLSFTVFDMSGQGR 79 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCC----------------SSCCCCSSEEEEEEECS----SCEEEEEEECCSTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC----------------CCcCCccceeEEEEEEC----CEEEEEEECCCCHH
Confidence 34799999999999999999997632100 01223444333333333 68999999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-------cCCCeEEEEeccCCCCCCchHHHHHHHH--HhCCC
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-------NNLEIIPVLNKIDLPGAEPSRVAREIEE--VIGLD 234 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-------~~~piIvViNKiDl~~~~~~~~~~el~~--~l~~~ 234 (646)
+...+..+++.+|++|+|+|++++.+++....|..... .++|+++|+||+|+.+....+...+... .+...
T Consensus 80 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 159 (190)
T 2h57_A 80 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDK 159 (190)
T ss_dssp TGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSS
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCC
Confidence 99999999999999999999999877777666654433 4789999999999976543222222221 11112
Q ss_pred cccccccccccccchhHHHHHHHHhCC
Q 043429 235 CTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 235 ~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
..+++++||++|.|+++++++|.+.+.
T Consensus 160 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 160 PWHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred ceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 347899999999999999999998764
No 100
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.84 E-value=1e-20 Score=181.04 Aligned_cols=160 Identities=18% Similarity=0.213 Sum_probs=117.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|++|+|||||+++|+..... ... . .|+... ....+..++..+.+++|||||+.+|
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~-----------~~~-----~-~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~ 66 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFP-----------GEY-----I-PTVFDN-YSANVMVDGKPVNLGLWDTAGQEDY 66 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC-----------SSC-----C-CCSCCE-EEEEEEETTEEEEEEEECCCCSGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCC-----------CCc-----C-Ccccce-eEEEEEECCEEEEEEEEECCCCHhH
Confidence 358999999999999999999863211 000 0 111111 1122334455788999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHH-HHHHHHHc---CCCeEEEEeccCCCCCC--------------chHHHHH
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLALEN---NLEIIPVLNKIDLPGAE--------------PSRVARE 226 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~-~~~~~~~~---~~piIvViNKiDl~~~~--------------~~~~~~e 226 (646)
...+..+++.+|++++|+|++++.+++... .|...+.. ++|+++|+||+|+.... ..+...+
T Consensus 67 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (186)
T 1mh1_A 67 DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 146 (186)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHH
Confidence 988889999999999999999988888775 56655553 89999999999986531 1122334
Q ss_pred HHHHhCCCcccccccccccccchhHHHHHHHHhCCCCC
Q 043429 227 IEEVIGLDCTNAILCSAKEGIGINEILNAIVKRIPPPS 264 (646)
Q Consensus 227 l~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P~ 264 (646)
+.+.++. .+++++||++|.|+++++++|.+.+..|.
T Consensus 147 ~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 147 MAKEIGA--VKYLECSALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp HHHHTTC--SEEEECCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred HHHhcCC--cEEEEecCCCccCHHHHHHHHHHHHhccc
Confidence 4444443 36899999999999999999999887653
No 101
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.84 E-value=1.6e-20 Score=181.74 Aligned_cols=165 Identities=16% Similarity=0.211 Sum_probs=118.1
Q ss_pred cccCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEE
Q 043429 77 LLKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLI 156 (646)
Q Consensus 77 ~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~li 156 (646)
+.+++.....+|+++|++|+|||||+++|++..... ......|.|....... . +..+++|
T Consensus 15 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-------------~~~~~~~~t~~~~~~~----~---~~~~~l~ 74 (195)
T 1svi_A 15 PEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLA-------------RTSSKPGKTQTLNFYI----I---NDELHFV 74 (195)
T ss_dssp GGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC--------------------------CCEEEEE----E---TTTEEEE
T ss_pred hhhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCcc-------------ccCCCCCceeeEEEEE----E---CCcEEEE
Confidence 455666678899999999999999999998632100 1122344455443222 1 2368999
Q ss_pred eCCC----------CccchhhHhhhhhhc---cceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC-chH
Q 043429 157 DTPG----------HVDFSYEVSRSLAAC---EGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE-PSR 222 (646)
Q Consensus 157 DTPG----------~~df~~~~~~~l~~a---d~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~-~~~ 222 (646)
|||| +..|...+..+++.+ |++++|+|++++.+......+......+.|+++|+||+|+.... ...
T Consensus 75 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~ 154 (195)
T 1svi_A 75 DVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDK 154 (195)
T ss_dssp ECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHH
T ss_pred ECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHH
Confidence 9999 555666667777777 99999999999988887766666666899999999999997644 333
Q ss_pred HHHHHHHHhCC-CcccccccccccccchhHHHHHHHHhCC
Q 043429 223 VAREIEEVIGL-DCTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 223 ~~~el~~~l~~-~~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
..+++.+.++. ...+++++||++|.|+++++++|.+.++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 155 HAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp HHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 45666665653 2357999999999999999999988764
No 102
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.84 E-value=6.4e-21 Score=186.48 Aligned_cols=159 Identities=21% Similarity=0.193 Sum_probs=116.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
+...+|+|+|++|+|||||+++|+..... ..... |+........+..++..+.++||||||+.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~---------------~~~~~--t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 85 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFK---------------QDSNH--TIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-----------------------------CCEEEEEEEETTEEEEEEEECCTTHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC---------------ccCCC--cccceeEEEEEEECCeeeEEEEEcCCCcH
Confidence 45689999999999999999999863211 11111 22222233334444556899999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCT 236 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~ 236 (646)
+|...+..+++.+|++|+|+|++++.+++.+..|...+. .++|+++|+||+|+.... ......++.+..+.
T Consensus 86 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~--- 162 (200)
T 2o52_A 86 RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENEL--- 162 (200)
T ss_dssp HHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCC---
Confidence 998888999999999999999999988888888776553 378999999999986432 12233444444554
Q ss_pred cccccccccccchhHHHHHHHHhCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+++++||++|.|+++++++|.+.+.
T Consensus 163 ~~~~~SA~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 163 MFLETSALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp EEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999987653
No 103
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=2.1e-20 Score=181.80 Aligned_cols=164 Identities=21% Similarity=0.270 Sum_probs=115.8
Q ss_pred cccccCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEE
Q 043429 75 DRLLKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLN 154 (646)
Q Consensus 75 ~~~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~ 154 (646)
..+..+......+|+++|++|+|||||+++|+..... .... .|+.... ...+..++..+.++
T Consensus 18 ~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~-----------~~~~------~t~~~~~-~~~~~~~~~~~~~~ 79 (196)
T 2atv_A 18 LYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFI-----------WEYD------PTLESTY-RHQATIDDEVVSME 79 (196)
T ss_dssp ---------CCEEEEEECCTTSSHHHHHHHHHHSCCC-----------SCCC------TTCCEEE-EEEEEETTEEEEEE
T ss_pred cchhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCC-----------cccC------CCCCceE-EEEEEECCEEEEEE
Confidence 3455555556689999999999999999999873211 0000 1222111 22233455578899
Q ss_pred EEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCC--chHHHHHH
Q 043429 155 LIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAE--PSRVAREI 227 (646)
Q Consensus 155 liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~--~~~~~~el 227 (646)
+|||||+.+ ...+..+++.+|++++|+|+++..++.....|...+. .++|+++|+||+|+.... ..+...++
T Consensus 80 l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~ 158 (196)
T 2atv_A 80 ILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKL 158 (196)
T ss_dssp EEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 999999998 7778889999999999999999888777776655443 489999999999986532 23344455
Q ss_pred HHHhCCCccccccccccccc-chhHHHHHHHHhC
Q 043429 228 EEVIGLDCTNAILCSAKEGI-GINEILNAIVKRI 260 (646)
Q Consensus 228 ~~~l~~~~~~i~~vSAk~g~-GV~eLl~~I~~~i 260 (646)
.+.++. +++++||++|. |+++++++|.+.+
T Consensus 159 ~~~~~~---~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 159 ATELAC---AFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp HHHHTS---EEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred HHHhCC---eEEEECCCcCCcCHHHHHHHHHHHH
Confidence 555654 58999999999 9999999998865
No 104
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=3.3e-20 Score=174.82 Aligned_cols=157 Identities=18% Similarity=0.164 Sum_probs=115.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|++|+|||||+++|+..... +.. ..|+.... ...+..++..+.+++|||||+.+|.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~-----------~~~------~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~ 65 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFR-----------ESY------IPTVEDTY-RQVISCDKSICTLQITDTTGSHQFP 65 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCC-----------SSC------CCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-----------CCC------CCCccccE-EEEEEECCEEEEEEEEECCCchhhH
Confidence 58999999999999999999863211 000 01221111 1122334456789999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH------cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCccc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE------NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTN 237 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~------~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~ 237 (646)
..+..+++.+|++++|+|++++.+.+....|...+. .++|+++|+||+|+.... .....+++...++. +
T Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~---~ 142 (172)
T 2erx_A 66 AMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKC---A 142 (172)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTC---E
T ss_pred HHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCC---e
Confidence 999999999999999999998877777666654433 379999999999986432 23334455555554 5
Q ss_pred ccccccccccchhHHHHHHHHhCCCC
Q 043429 238 AILCSAKEGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~ip~P 263 (646)
++++||++|.|+++++++|.+.+..+
T Consensus 143 ~~~~Sa~~~~gi~~l~~~l~~~~~~~ 168 (172)
T 2erx_A 143 FMETSAKLNHNVKELFQELLNLEKRR 168 (172)
T ss_dssp EEECBTTTTBSHHHHHHHHHHTCCSS
T ss_pred EEEecCCCCcCHHHHHHHHHHHHhhh
Confidence 89999999999999999999987653
No 105
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.84 E-value=1.1e-20 Score=187.01 Aligned_cols=161 Identities=15% Similarity=0.101 Sum_probs=120.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
....+|+++|.+|+|||||+++|+..... . ....|+.... ......++..+.++||||||++
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~-----------~------~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~ 86 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYP-----------E------TYVPTVFENY-TACLETEEQRVELSLWDTSGSP 86 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC-----------S------SCCCCSEEEE-EEEEEC--CEEEEEEEEECCSG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCC-----------C------CcCCeeeeeE-EEEEEECCEEEEEEEEECCCCH
Confidence 34579999999999999999999873211 1 0111222221 2233344567899999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhh-HHHHHHHHHc---CCCeEEEEeccCCCCC--------------CchHHH
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQT-LANVYLALEN---NLEIIPVLNKIDLPGA--------------EPSRVA 224 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt-~~~~~~~~~~---~~piIvViNKiDl~~~--------------~~~~~~ 224 (646)
+|...+..+++.+|++|+|+|+++..++.. ...|...+.. ++|+++|+||+|+... ...+..
T Consensus 87 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 166 (214)
T 3q3j_B 87 YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQG 166 (214)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHH
T ss_pred hHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHH
Confidence 999999999999999999999999988887 5777766553 7899999999998642 234445
Q ss_pred HHHHHHhCCCcccccccccccccc-hhHHHHHHHHhCCCC
Q 043429 225 REIEEVIGLDCTNAILCSAKEGIG-INEILNAIVKRIPPP 263 (646)
Q Consensus 225 ~el~~~l~~~~~~i~~vSAk~g~G-V~eLl~~I~~~ip~P 263 (646)
.++.+.++.. +++++||++|.| |+++|++|++.+..+
T Consensus 167 ~~~~~~~~~~--~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 167 CAIAKQLGAE--IYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp HHHHHHHTCS--EEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHcCCC--EEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 5666666652 589999999998 999999999876443
No 106
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.84 E-value=1.3e-20 Score=184.91 Aligned_cols=157 Identities=17% Similarity=0.201 Sum_probs=115.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
+..+|+++|++|+|||||+++|+..... . ...+ |+. ......+..++..+.+++|||||+++
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~-----------~-----~~~~-t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP-----------G-----EYIP-TVF-DNYSANVMVDGKPVNLGLWDTAGLED 90 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCC-----------C------CCC-CSE-EEEEEEEECC-CEEEEEEEEECCSGG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCC-----------C-----CcCC-eec-ceeEEEEEECCEEEEEEEEECCCchh
Confidence 4579999999999999999999873211 0 0111 111 12223334455678888999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHH-HHHHHHHc---CCCeEEEEeccCCCCCCc--------------hHHHH
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLALEN---NLEIIPVLNKIDLPGAEP--------------SRVAR 225 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~-~~~~~~~~---~~piIvViNKiDl~~~~~--------------~~~~~ 225 (646)
|...+..+++.+|++++|+|++++.+++... .|...+.. ++|+++|+||+|+..... .+...
T Consensus 91 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 170 (204)
T 4gzl_A 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 170 (204)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHH
Confidence 9999999999999999999999998888875 66665553 899999999999865421 12223
Q ss_pred HHHHHhCCCcccccccccccccchhHHHHHHHHhC
Q 043429 226 EIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 226 el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
++.+.++. .+++++||++|.||++++++|.+.+
T Consensus 171 ~~~~~~~~--~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 171 AMAKEIGA--VKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHHHHTTC--SEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred HHHHhcCC--cEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 34444443 3599999999999999999998764
No 107
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.84 E-value=3.1e-20 Score=181.14 Aligned_cols=158 Identities=19% Similarity=0.231 Sum_probs=118.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
....+|+|+|++|+|||||+++|+..... .... + |.... ....+..++..+.+.||||||+.
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-----------~~~~-----~-t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~ 73 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFV-----------EDYE-----P-TKADS-YRKKVVLDGEEVQIDILDTAGQE 73 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCC-----------TTCC-----T-TCCEE-EEEEEEETTEEEEEEEEECCCTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCC-----------CCCC-----C-ccceE-EEEEEEECCEEEEEEEEcCCChh
Confidence 34679999999999999999999873210 1110 1 11111 11223344556789999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc-----CCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDC 235 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~-----~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~ 235 (646)
+|...+..+++.+|++++|+|+++..++.....|...+.. ++|+++|+||+|+.... ..+...++.+.++.
T Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-- 151 (206)
T 2bov_A 74 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV-- 151 (206)
T ss_dssp CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC--
T ss_pred hhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCC--
Confidence 9999999999999999999999998888887777655442 78999999999996532 22334445555564
Q ss_pred ccccccccccccchhHHHHHHHHhCC
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+++++||++|.|+++++++|.+.+.
T Consensus 152 -~~~~~Sa~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 152 -NYVETSAKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp -EEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred -eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999988663
No 108
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1e-20 Score=188.17 Aligned_cols=160 Identities=19% Similarity=0.211 Sum_probs=117.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
+...+|+|+|++|+|||||+++|+...... .... |+........+..++..+.++||||||+.
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~---------------~~~~--t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 73 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNM---------------DSKS--TIGVEFATRTLEIEGKRIKAQIWDTAGQE 73 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC-----------------------CCSEEEEEEEETTEEEEEEEECCTTTT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCC---------------CCCC--cccceeEEEEEEECCEEEEEEEEECCCcc
Confidence 456899999999999999999998732111 1111 22222223334444556899999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCT 236 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~ 236 (646)
+|...+..+++.+|++|+|+|++++.+++....|...+. .++|+++|+||+|+.... ..+...++.+..+.
T Consensus 74 ~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~--- 150 (223)
T 3cpj_B 74 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQL--- 150 (223)
T ss_dssp TTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTC---
T ss_pred chhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCC---
Confidence 999999999999999999999999988888888876654 278999999999986532 22334455555554
Q ss_pred cccccccccccchhHHHHHHHHhCCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+++++||++|.||++++++|.+.+..
T Consensus 151 ~~~~~Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 151 LFTETSALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp EEEECCCC-CCCHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999988754
No 109
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.84 E-value=1.8e-20 Score=180.11 Aligned_cols=155 Identities=21% Similarity=0.252 Sum_probs=117.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
.+..+|+++|++|+|||||+++|++.. . . ....|+......+.+. ++.+++|||||+.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~----------~------~~~~t~~~~~~~~~~~----~~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--V----------D------TISPTLGFNIKTLEHR----GFKLNIWDVGGQK 73 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--C----------S------SCCCCSSEEEEEEEET----TEEEEEEEECCSH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--C----------C------cccccCccceEEEEEC----CEEEEEEECCCCH
Confidence 345799999999999999999997632 1 0 0111333333334443 7899999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCCchHHHHHHHHHhCC----
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL---- 233 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~~~~~~~el~~~l~~---- 233 (646)
++...+..+++.+|++++|+|++++.+++....|..... .+.|+++|+||+|+...... +++.+.++.
T Consensus 74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 150 (186)
T 1ksh_A 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC---NAIQEALELDSIR 150 (186)
T ss_dssp HHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCC
T ss_pred hHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCH---HHHHHHhChhhcc
Confidence 999999999999999999999999888877766665543 36899999999999765432 233333331
Q ss_pred -CcccccccccccccchhHHHHHHHHhCCC
Q 043429 234 -DCTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 234 -~~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
...+++++||++|.|+++++++|.+.++.
T Consensus 151 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 151 SHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp SSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 23468999999999999999999987754
No 110
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.84 E-value=3.1e-20 Score=177.70 Aligned_cols=155 Identities=19% Similarity=0.239 Sum_probs=115.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|++|+|||||+++|+..... ... .. |.... ....+..++..+.+.||||||+.+|
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~~-----------~~~-----~~-t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~ 79 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEFV-----------EDY-----EP-TKADS-YRKKVVLDGEEVQIDILDTAGQEDY 79 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-----------CSC-----CT-TCCEE-EEEEEEETTEEEEEEEEECCCTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCC-----------CcC-----CC-ccceE-EEEEEEECCEEEEEEEEECCCCccc
Confidence 479999999999999999999873210 100 01 11111 1122334455678999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCccc
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTN 237 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~ 237 (646)
...+..+++.+|++++|+|+++..+++....|...+. .++|+++|+||+|+.... ..+...++.+.++. +
T Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~ 156 (187)
T 2a9k_A 80 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV---N 156 (187)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTC---E
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCC---e
Confidence 9999999999999999999999888777777765543 279999999999986532 22333445455554 5
Q ss_pred ccccccccccchhHHHHHHHHhC
Q 043429 238 AILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
++++||++|.|+++++++|.+.+
T Consensus 157 ~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 157 YVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998865
No 111
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.84 E-value=2.3e-20 Score=206.21 Aligned_cols=225 Identities=19% Similarity=0.204 Sum_probs=157.2
Q ss_pred ccCCCCCCEEEeeecccccccCCCcCccchhhcccccccccccccccccceeEeecCCCCCchHHhhhhhccccc---cC
Q 043429 4 ELSSSPAPVLSIKHQTFATLKKPHISSLSHFLSKSHRRCNYSLSISKHSCIFRVSCQSQATDAELATRVGQDRLL---KV 80 (646)
Q Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~~s~~~~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~ 80 (646)
.+...+.|++.+.++.+..-.. .. ...++..+...++.+|+.++.+..++.......... ..
T Consensus 126 ~l~~~~~pvilV~NK~D~~~~~---~~------------~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~ 190 (456)
T 4dcu_A 126 ILYRTKKPVVLAVNKLDNTEMR---AN------------IYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETK 190 (456)
T ss_dssp HHTTCCSCEEEEEECC------------------------CCSGGGSSSSEEECCTTTCTTHHHHHHHHHTTGGGSCSSC
T ss_pred HHHHcCCCEEEEEECccchhhh---hh------------HHHHHHcCCCceEEeecccccchHHHHHHHHhhcccccccc
Confidence 3455788999999988853111 00 111233445567899999999998888776443211 12
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCC
Q 043429 81 PASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPG 160 (646)
Q Consensus 81 ~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG 160 (646)
..+...+|+++|++|+|||||+++|+.... ...+...|+|.+.....+.+. +..++||||||
T Consensus 191 ~~~~~~ki~ivG~~~vGKSslin~l~~~~~--------------~~~~~~~gtt~~~~~~~~~~~----~~~~~l~DT~G 252 (456)
T 4dcu_A 191 YNEEVIQFCLIGRPNVGKSSLVNAMLGEER--------------VIVSNVAGTTRDAVDTSFTYN----QQEFVIVDTAG 252 (456)
T ss_dssp CCTTCEEEEEECSTTSSHHHHHHHHHTSTT--------------EEECC------CTTSEEEEET----TEEEEETTGGG
T ss_pred cccccceeEEecCCCCCHHHHHHHHhCCCc--------------cccCCCCCeEEEEEEEEEEEC----CceEEEEECCC
Confidence 234578999999999999999999986321 123445677777665555554 67899999999
Q ss_pred ----------CccchhhHh-hhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCc---hHHHHH
Q 043429 161 ----------HVDFSYEVS-RSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEP---SRVARE 226 (646)
Q Consensus 161 ----------~~df~~~~~-~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~---~~~~~e 226 (646)
++.|..... .+++.+|++|+|+|++++.+.++...+..+.+.++|+++|+||+|+...+. ++..+.
T Consensus 253 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~ 332 (456)
T 4dcu_A 253 MRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEEN 332 (456)
T ss_dssp TTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHH
T ss_pred CCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHH
Confidence 555555433 478899999999999999999998888888889999999999999976542 344455
Q ss_pred HHHHhC-CCcccccccccccccchhHHHHHHHHhCC
Q 043429 227 IEEVIG-LDCTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 227 l~~~l~-~~~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+.+.+. ....+++++||++|.||+++++++.+.+.
T Consensus 333 ~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~ 368 (456)
T 4dcu_A 333 IRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASE 368 (456)
T ss_dssp HHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHH
Confidence 555543 22357999999999999999999987653
No 112
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.84 E-value=5.1e-20 Score=172.00 Aligned_cols=154 Identities=25% Similarity=0.325 Sum_probs=116.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|++|+|||||+++|+..... .... .|.... ....+..++..+.+++|||||+.++.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~-----------~~~~------~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~ 65 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV-----------DECD------PTIEDS-YRKQVVIDGETCLLDILDTAGQEEYS 65 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-----------SCCC------TTCCEE-EEEEEEETTEEEEEEEEECCCCSSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc-----------cccC------CccceE-EEEEEEECCEEEEEEEEECCCchhhh
Confidence 48999999999999999999873211 0000 011111 11223344556889999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc-----CCCeEEEEeccCCCCC-CchHHHHHHHHHhCCCccccc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPGA-EPSRVAREIEEVIGLDCTNAI 239 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~-----~~piIvViNKiDl~~~-~~~~~~~el~~~l~~~~~~i~ 239 (646)
..+..++..+|++++|+|+++..+.+....|...+.. ++|+++|+||+|+... ...+..+++.+.++. +++
T Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~ 142 (166)
T 2ce2_X 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGI---PYI 142 (166)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTC---CEE
T ss_pred HHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCC---eEE
Confidence 9999999999999999999988777777777655432 7999999999998763 234455666666775 599
Q ss_pred ccccccccchhHHHHHHHHhC
Q 043429 240 LCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 240 ~vSAk~g~GV~eLl~~I~~~i 260 (646)
++||++|.|+++++++|.+.+
T Consensus 143 ~~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 143 ETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp EECTTTCTTHHHHHHHHHHHH
T ss_pred EecCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998765
No 113
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.84 E-value=3.1e-21 Score=191.26 Aligned_cols=174 Identities=17% Similarity=0.170 Sum_probs=119.8
Q ss_pred cccCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEE
Q 043429 77 LLKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLI 156 (646)
Q Consensus 77 ~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~li 156 (646)
+.+.+....++|+++|++|+|||||+++|++..... ......|+|......... ...+..++||
T Consensus 21 ~~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~-------------~~~~~~~~t~~~~~~~~~---~~~~~~~~l~ 84 (223)
T 4dhe_A 21 LRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLA-------------FASKTPGRTQHINYFSVG---PAAEPVAHLV 84 (223)
T ss_dssp GGGSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSS-------------CTTCCCCSCCCEEEEEES---CTTSCSEEEE
T ss_pred hhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcce-------------eecCCCCcccceEEEEec---CCCCCcEEEE
Confidence 455566677899999999999999999998732100 122334555554332221 1346789999
Q ss_pred eCCCCcc----------chhhHhhhhhh---ccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCc-hH
Q 043429 157 DTPGHVD----------FSYEVSRSLAA---CEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEP-SR 222 (646)
Q Consensus 157 DTPG~~d----------f~~~~~~~l~~---ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~-~~ 222 (646)
||||+.+ |...+..+++. +|++++|+|++++.+......+......++|+++|+||+|+..... ..
T Consensus 85 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~ 164 (223)
T 4dhe_A 85 DLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESIN 164 (223)
T ss_dssp ECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHH
T ss_pred cCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHH
Confidence 9999643 34455566666 7779999999998887776666666667999999999999875432 22
Q ss_pred HHHHHHHHhC-------CCcccccccccccccchhHHHHHHHHhCCCCCCC
Q 043429 223 VAREIEEVIG-------LDCTNAILCSAKEGIGINEILNAIVKRIPPPSNT 266 (646)
Q Consensus 223 ~~~el~~~l~-------~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P~~~ 266 (646)
..+++.+.+. ....+++++||++|.|+++++++|.+.++.+...
T Consensus 165 ~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~~ 215 (223)
T 4dhe_A 165 ALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAAAD 215 (223)
T ss_dssp HHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccCCc
Confidence 3333333321 1345799999999999999999999999877544
No 114
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=182.78 Aligned_cols=163 Identities=20% Similarity=0.205 Sum_probs=120.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
+...+|+++|.+|+|||||+++|++..... ....+++.... ...+..++..+.+.+|||||+.
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~---------------~~~~~~~~~~~--~~~~~~~~~~~~l~i~Dt~g~~ 83 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDS---------------AHEPENPEDTY--ERRIMVDKEEVTLVVYDIWEQG 83 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCG---------------GGTTTSCTTEE--EEEEEETTEEEEEEEECCCCCS
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCc---------------cCCCCcccceE--EEEEEECCEEEEEEEEecCCCc
Confidence 446799999999999999999996422211 11122222222 2233445567889999999999
Q ss_pred cchh-hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCC
Q 043429 163 DFSY-EVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLD 234 (646)
Q Consensus 163 df~~-~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~ 234 (646)
++.. .+..+++.+|++|+|+|+++..++.....|...+. .++|+++|+||+|+.... ..+..+++.+.++.
T Consensus 84 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~- 162 (195)
T 3cbq_A 84 DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSC- 162 (195)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-
T ss_pred cchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCC-
Confidence 8765 66778899999999999999888888888876654 379999999999997543 23334456555554
Q ss_pred cccccccccccccchhHHHHHHHHhCCCCCC
Q 043429 235 CTNAILCSAKEGIGINEILNAIVKRIPPPSN 265 (646)
Q Consensus 235 ~~~i~~vSAk~g~GV~eLl~~I~~~ip~P~~ 265 (646)
+++++||++|.||+++|++|++.+.....
T Consensus 163 --~~~e~Sa~~~~~v~~lf~~l~~~i~~~~~ 191 (195)
T 3cbq_A 163 --KHIETSAALHHNTRELFEGAVRQIRLRRG 191 (195)
T ss_dssp --EEEEEBTTTTBSHHHHHHHHHHHHHTTC-
T ss_pred --EEEEEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence 58999999999999999999998765443
No 115
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.84 E-value=2e-20 Score=181.41 Aligned_cols=159 Identities=18% Similarity=0.175 Sum_probs=120.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
...+|+++|++|+|||||+++|+..... . ....|+..... ..+..++..+.+++|||||+++
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~-----------~------~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~ 83 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIP-----------T------AYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEE 83 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-----------S------SCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCC-----------C------ccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHH
Confidence 3579999999999999999999873210 0 01112222221 2233455678899999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhH-HHHHHHHHc---CCCeEEEEeccCCCCC----CchHHHHHHHHHhCCCc
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALEN---NLEIIPVLNKIDLPGA----EPSRVAREIEEVIGLDC 235 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~-~~~~~~~~~---~~piIvViNKiDl~~~----~~~~~~~el~~~l~~~~ 235 (646)
|...+..+++.+|++++|+|++++.++... ..|...+.. ++|+++|+||+|+... ...+..+++.+.++..
T Consensus 84 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~- 162 (194)
T 3reg_A 84 YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCV- 162 (194)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCS-
T ss_pred HHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCC-
Confidence 999999999999999999999998888775 566655543 6899999999998743 2344455666666654
Q ss_pred ccccccccccccchhHHHHHHHHhCCC
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+++++||++|.||++++++|.+.+..
T Consensus 163 -~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 163 -AYIEASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp -CEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred -EEEEeecCCCCCHHHHHHHHHHHHHh
Confidence 38999999999999999999987643
No 116
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=5.3e-20 Score=178.47 Aligned_cols=159 Identities=19% Similarity=0.191 Sum_probs=118.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
...+|+++|++|+|||||+++|+..... +.. ..|+.... ...+..++..+.+.+|||||+.+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-----------~~~------~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~ 68 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFR-----------DTY------IPTIEDTY-RQVISCDKSVCTLQITDTTGSHQ 68 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCC-----------CTT------SCCCCEEE-EEEEEETTEEEEEEEEECCGGGS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCC-----------Ccc------cCccccce-eEEEEECCEEEEEEEEeCCChHH
Confidence 3479999999999999999999873211 100 01222111 12233345567899999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH------cCCCeEEEEeccCCCCCC-chHHHHHHHHHhCCCcc
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE------NNLEIIPVLNKIDLPGAE-PSRVAREIEEVIGLDCT 236 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~------~~~piIvViNKiDl~~~~-~~~~~~el~~~l~~~~~ 236 (646)
|...+..+++.+|++++|+|+++..+++....|+..+. .++|+++|+||+|+.... ..+...++...++.
T Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--- 145 (199)
T 2gf0_A 69 FPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKC--- 145 (199)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTC---
T ss_pred hHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCC---
Confidence 99999999999999999999998877777666654332 278999999999997543 23344455555665
Q ss_pred cccccccccccchhHHHHHHHHhCCCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip~P 263 (646)
+++++||++|.|+++++++|.+.+...
T Consensus 146 ~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 146 AFMETSAKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHhhh
Confidence 589999999999999999999987543
No 117
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.83 E-value=1.4e-20 Score=180.12 Aligned_cols=154 Identities=21% Similarity=0.223 Sum_probs=112.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
++..+|+++|++|+|||||+++|+.... .....|+......+.+. +..+++|||||+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~------------------~~~~~t~~~~~~~~~~~----~~~~~i~Dt~G~~ 73 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV------------------VTTKPTIGFNVETLSYK----NLKLNVWDLGGQT 73 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE------------------EEECSSTTCCEEEEEET----TEEEEEEEEC---
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc------------------CccCCcCccceEEEEEC----CEEEEEEECCCCH
Confidence 4568999999999999999999964211 01112333333334443 6899999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCCchHHHHHHHHHhCCC---
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLD--- 234 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~--- 234 (646)
++...+..+++.+|++++|+|++++.+++....|..... .+.|+++|+||+|+.+.... +++.+.++..
T Consensus 74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~i~~~~~~~~~~ 150 (183)
T 1moz_A 74 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSA---SEVSKELNLVELK 150 (183)
T ss_dssp -CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCH---HHHHHHTTTTTCC
T ss_pred hHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCH---HHHHHHhCccccc
Confidence 999999999999999999999999888887776665543 57899999999999765432 2344444322
Q ss_pred --cccccccccccccchhHHHHHHHHhCC
Q 043429 235 --CTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 235 --~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
..+++++||++|.|+++++++|.+.++
T Consensus 151 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 151 DRSWSIVASSAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp SSCEEEEEEBGGGTBTHHHHHHHHHHHHH
T ss_pred CCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 236899999999999999999988653
No 118
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.83 E-value=2.5e-20 Score=194.71 Aligned_cols=157 Identities=20% Similarity=0.185 Sum_probs=114.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc-
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD- 163 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d- 163 (646)
..+|+|+|++|+|||||+|+|++....+. ....++|.........+ .+..++||||||+.+
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~iv--------------s~~~~tTr~~i~~i~~~----~~~~l~l~DTpG~~~~ 68 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPI--------------SPRPQTTRKRLRGILTE----GRRQIVFVDTPGLHKP 68 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCC--------------CSSSCCCCSCEEEEEEE----TTEEEEEEECCCCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeee--------------cCCCCceeEEEEEEEEe----CCcEEEEecCccccch
Confidence 46899999999999999999987433221 11223343322222222 378999999999987
Q ss_pred -------chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc--CCCeEEEEeccCCCCCCchHHHHHHHHHhCCC
Q 043429 164 -------FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN--NLEIIPVLNKIDLPGAEPSRVAREIEEVIGLD 234 (646)
Q Consensus 164 -------f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~--~~piIvViNKiDl~~~~~~~~~~el~~~l~~~ 234 (646)
|...+..+++.+|++++|+|++++.+..+...+...... ++|+++|+||+|+...... ..+.+.+. ..
T Consensus 69 ~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~--~~ 145 (301)
T 1wf3_A 69 MDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEE-AMKAYHEL--LP 145 (301)
T ss_dssp CSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH-HHHHHHHT--ST
T ss_pred hhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHH-HHHHHHHh--cC
Confidence 556677889999999999999998877765444444445 8999999999999754321 33333333 34
Q ss_pred cccccccccccccchhHHHHHHHHhCCC
Q 043429 235 CTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 235 ~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
..+++++||++|.|+++++++|.+.+|.
T Consensus 146 ~~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 146 EAEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp TSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred cCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 4568999999999999999999998864
No 119
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.83 E-value=4.6e-20 Score=177.93 Aligned_cols=164 Identities=20% Similarity=0.191 Sum_probs=119.0
Q ss_pred cccCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEE
Q 043429 77 LLKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLI 156 (646)
Q Consensus 77 ~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~li 156 (646)
+...+....++|+++|++|+|||||+++|+..... ......|.|....... . +..+.+|
T Consensus 15 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~t~~~~~~~---~----~~~~~i~ 73 (195)
T 3pqc_A 15 PGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA--------------FVSKTPGKTRSINFYL---V----NSKYYFV 73 (195)
T ss_dssp TTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS--------------CCCSSCCCCCCEEEEE---E----TTTEEEE
T ss_pred hhhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccc--------------cccCCCCCccCeEEEE---E----CCcEEEE
Confidence 44556667789999999999999999999874211 1122334444433211 1 4568899
Q ss_pred eCCC----------CccchhhHhhhhhhc---cceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC-chH
Q 043429 157 DTPG----------HVDFSYEVSRSLAAC---EGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE-PSR 222 (646)
Q Consensus 157 DTPG----------~~df~~~~~~~l~~a---d~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~-~~~ 222 (646)
|||| +..+...+..+++.+ |++++|+|++.+.+......+......++|+++|+||+|+.... ...
T Consensus 74 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~ 153 (195)
T 3pqc_A 74 DLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAK 153 (195)
T ss_dssp ECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHH
T ss_pred ECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHH
Confidence 9999 444555566666665 89999999999888777766666667799999999999987543 334
Q ss_pred HHHHHHHHhCC-CcccccccccccccchhHHHHHHHHhCC
Q 043429 223 VAREIEEVIGL-DCTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 223 ~~~el~~~l~~-~~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
..+++.+.+.. ...+++++||++|.||++++++|.+.++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 154 KLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp HHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 44555555432 3457999999999999999999998775
No 120
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.83 E-value=4e-20 Score=177.95 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=116.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
...+|+++|++|+|||||+++|+..... .. ...|+.... ...+..++..+.+++|||||+.+
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~-----------~~------~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~ 67 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFP-----------EN------YVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 67 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-----------SS------CCCCSEEEE-EEEEECSSCEEEEEEEEECCSGG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCC-----------CC------CCCccceeE-EEEEEECCEEEEEEEEECCCChh
Confidence 3579999999999999999999873211 00 011222221 22344455678999999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhH-HHHHHHHH---cCCCeEEEEeccCCCCC--------------CchHHHH
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE---NNLEIIPVLNKIDLPGA--------------EPSRVAR 225 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~-~~~~~~~~---~~~piIvViNKiDl~~~--------------~~~~~~~ 225 (646)
|...+..+++.+|++|+|+|+++..+++.. ..|...+. .+.|+++|+||+|+... ...+..+
T Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 147 (184)
T 1m7b_A 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGA 147 (184)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHH
T ss_pred hhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHH
Confidence 998888999999999999999998888776 56765544 37899999999998642 1223344
Q ss_pred HHHHHhCCCcccccccccc-cccchhHHHHHHHHhC
Q 043429 226 EIEEVIGLDCTNAILCSAK-EGIGINEILNAIVKRI 260 (646)
Q Consensus 226 el~~~l~~~~~~i~~vSAk-~g~GV~eLl~~I~~~i 260 (646)
++.+.++. .+++++||+ +|.|++++|++|.+.+
T Consensus 148 ~~~~~~~~--~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 148 NMAKQIGA--ATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHHHHHTC--SEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred HHHHHcCC--cEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 55555552 368999999 6999999999998754
No 121
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.83 E-value=7.4e-21 Score=185.64 Aligned_cols=160 Identities=19% Similarity=0.179 Sum_probs=91.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCC--CeEEEEEeCCCC
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENE--PFCLNLIDTPGH 161 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~--~~~l~liDTPG~ 161 (646)
...+|+++|++|+|||||+++|+....... . ....|+........+..++. .+.+++|||||+
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~---------~------~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 83 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFL---------K------DYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGS 83 (208)
T ss_dssp EEEEEEEC-------------------------------------------------CEEEECTTSSEEEEEEEEETTTT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCccc---------C------CCCCccceEEEEEEEEECCcccEEEEEEEECCCc
Confidence 346999999999999999999986311110 0 11123332223333444444 689999999999
Q ss_pred ccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-------cCCCeEEEEeccCCCC-CC--chHHHHHHHHHh
Q 043429 162 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-------NNLEIIPVLNKIDLPG-AE--PSRVAREIEEVI 231 (646)
Q Consensus 162 ~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-------~~~piIvViNKiDl~~-~~--~~~~~~el~~~l 231 (646)
.+|...+..+++.+|++|+|+|++++.+++....|...+. .++|+++|+||+|+.. .. ..+..+++.+.+
T Consensus 84 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~ 163 (208)
T 2yc2_C 84 DLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTN 163 (208)
T ss_dssp HHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHc
Confidence 9999999999999999999999999988888888876664 4789999999999976 22 234445565556
Q ss_pred CCCccccccccccc-ccchhHHHHHHHHhCC
Q 043429 232 GLDCTNAILCSAKE-GIGINEILNAIVKRIP 261 (646)
Q Consensus 232 ~~~~~~i~~vSAk~-g~GV~eLl~~I~~~ip 261 (646)
+. +++++||++ |.|+++++++|.+.+.
T Consensus 164 ~~---~~~~~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 164 TL---DFFDVSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp TC---EEEECCC-------CHHHHHHHHHHH
T ss_pred CC---EEEEeccCCCCcCHHHHHHHHHHHHH
Confidence 64 599999999 9999999999988653
No 122
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.82 E-value=4.2e-20 Score=180.05 Aligned_cols=160 Identities=18% Similarity=0.124 Sum_probs=116.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
....+|+++|++|+|||||+++|+.... .... . .|+... ....+..++..+.+++|||||+.
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~-----------~~~~-----~-~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~ 79 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY-----------PTEY-----I-PTAFDN-FSAVVSVDGRPVRLQLCDTAGQD 79 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC-------------------------CCSSEE-EEEEEEETTEEEEEEEEECCCST
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-----------CCCC-----C-Ccccce-eEEEEEECCEEEEEEEEECCCCH
Confidence 3457999999999999999999986321 0000 1 122211 12233444556789999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHH-HHHHHHHc---CCCeEEEEeccCCCCC--------------CchHHH
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLALEN---NLEIIPVLNKIDLPGA--------------EPSRVA 224 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~-~~~~~~~~---~~piIvViNKiDl~~~--------------~~~~~~ 224 (646)
+|...+..+++.+|++++|+|++++.+++... .|...+.. ++|+++|+||+|+... ...+..
T Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 159 (201)
T 2q3h_A 80 EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAA 159 (201)
T ss_dssp TCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH
T ss_pred HHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHH
Confidence 99998889999999999999999988888775 56655543 8999999999998642 122334
Q ss_pred HHHHHHhCCCcccccccccccccchhHHHHHHHHhCCC
Q 043429 225 REIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 225 ~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
.++.+.++. .+++++||++|.|+++++++|.+.+..
T Consensus 160 ~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 160 KLLAEEIKA--ASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp HHHHHHHTC--SEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC--cEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 455555554 258999999999999999999887643
No 123
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.82 E-value=6.6e-20 Score=177.30 Aligned_cols=155 Identities=16% Similarity=0.138 Sum_probs=113.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
...+|+++|++|+|||||+++|+..... ..+. .|+.... ...+..++..+.++||||||+.+
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~-----------~~~~------~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 81 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI-----------SEYD------PNLEDTY-SSEETVDHQPVHLRVMDTADLDT 81 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC-----------SCCC------TTCCEEE-EEEEEETTEEEEEEEEECCC---
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC-----------cccC------CCcccee-eEEEEECCEEEEEEEEECCCCCc
Confidence 3579999999999999999999873211 1111 1222211 12233455678999999999998
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-------cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCC
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-------NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLD 234 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-------~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~ 234 (646)
|... .++++.+|++++|+|+++..+++....|...+. .++|+++|+||+|+.... ..+..+++.+.+++
T Consensus 82 ~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~- 159 (187)
T 3c5c_A 82 PRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGC- 159 (187)
T ss_dssp CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-
T ss_pred chhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCC-
Confidence 8764 679999999999999999888888877765543 489999999999986432 23445566666665
Q ss_pred ccccccccc-ccccchhHHHHHHHHhC
Q 043429 235 CTNAILCSA-KEGIGINEILNAIVKRI 260 (646)
Q Consensus 235 ~~~i~~vSA-k~g~GV~eLl~~I~~~i 260 (646)
+++++|| ++|.||+++|++|++.+
T Consensus 160 --~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 160 --LFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp --EEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred --cEEEEeecCccccHHHHHHHHHHHH
Confidence 5899999 89999999999998765
No 124
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.82 E-value=1e-19 Score=175.74 Aligned_cols=151 Identities=15% Similarity=0.219 Sum_probs=112.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
...+|+|+|.+|+|||||+++|+..... .... .|.. .....+..++..+.+++|||||+++
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~-----------~~~~------~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~ 79 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYV-----------QEES------PEGG--RFKKEIVVDGQSYLLLIRDEGGPPE 79 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCC-----------CCCC------TTCE--EEEEEEEETTEEEEEEEEECSSSCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcC------CCcc--eEEEEEEECCEEEEEEEEECCCChh
Confidence 4569999999999999999999873211 1010 1211 1123334455578899999999998
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc-----CCCeEEEEeccCCCC----CCchHHHHHHHHHhCCC
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPG----AEPSRVAREIEEVIGLD 234 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~-----~~piIvViNKiDl~~----~~~~~~~~el~~~l~~~ 234 (646)
|. +++.+|++++|+|+++..+++....|...+.. ++|+++|+||+|+.. ....+...++.+.++
T Consensus 80 ~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~-- 152 (184)
T 3ihw_A 80 LQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLK-- 152 (184)
T ss_dssp HH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTT--
T ss_pred hh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcC--
Confidence 76 78899999999999999999988888776653 689999999999842 222344455555554
Q ss_pred cccccccccccccchhHHHHHHHHhC
Q 043429 235 CTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 235 ~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
..+++++||++|.||+++|++|++.+
T Consensus 153 ~~~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 153 RCTYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp TCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred CCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 23589999999999999999998764
No 125
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=4.9e-20 Score=181.03 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=114.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|++|+|||||+++|+...... .. ..|+..... ..+..++..+.+.+|||||+.+|
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-----------~~------~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~ 86 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPE-----------VY------VPTVFENYV-ADIEVDGKQVELALWDTAGQEDY 86 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC------------------------CCEEE-EEEEETTEEEEEEEEECTTCTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCC-----------cC------CCcccceEE-EEEEECCEEEEEEEEECCCcHHH
Confidence 3699999999999999999998732110 00 012111111 12334455688999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhH-HHHHHHHHc---CCCeEEEEeccCCCCCC--------------chHHHHH
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALEN---NLEIIPVLNKIDLPGAE--------------PSRVARE 226 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~-~~~~~~~~~---~~piIvViNKiDl~~~~--------------~~~~~~e 226 (646)
...+..+++.+|++++|+|+++..+++.. ..|...+.. ++|+++|+||+|+.... ..+...+
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 166 (207)
T 2fv8_A 87 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRA 166 (207)
T ss_dssp TTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHH
Confidence 99899999999999999999998777776 556655543 89999999999986541 1112223
Q ss_pred HHHHhCCCcccccccccccccchhHHHHHHHHhCCCC
Q 043429 227 IEEVIGLDCTNAILCSAKEGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 227 l~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P 263 (646)
+...++. .+++++||++|.|+++++++|.+.+..+
T Consensus 167 ~~~~~~~--~~~~~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 167 MAVRIQA--YDYLECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp HHHHTTC--SEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred HHHhcCC--CEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 3333433 2589999999999999999999887554
No 126
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.82 E-value=1.7e-20 Score=185.35 Aligned_cols=161 Identities=17% Similarity=0.177 Sum_probs=116.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecC-CCeEEEEEeCCCCc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFEN-EPFCLNLIDTPGHV 162 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~-~~~~l~liDTPG~~ 162 (646)
...+|+|+|++|+|||||+++|+..... .....|+........+...+ ..+.+++|||||+.
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-----------------~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFE-----------------KNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTT-----------------CEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-----------------CCCCCccceeeEEEEEEeCCCcEEEEEEEecCCch
Confidence 4579999999999999999999752110 11112333333333343333 23889999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcccc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNA 238 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i 238 (646)
++...+..++..+|++|+|+|++++.+++....|...+. .++|+++|+||+|+...... ..++..+.......++
T Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~ 151 (218)
T 4djt_A 73 KKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKI-SKKLVMEVLKGKNYEY 151 (218)
T ss_dssp GTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----C-CHHHHHHHTTTCCCEE
T ss_pred hhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccc-CHHHHHHHHHHcCCcE
Confidence 999888999999999999999999999888877766554 36899999999999754211 1122333333334469
Q ss_pred cccccccccchhHHHHHHHHhCCC
Q 043429 239 ILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 239 ~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+++||++|.|+++++++|.+.+..
T Consensus 152 ~~~Sa~~g~gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 152 FEISAKTAHNFGLPFLHLARIFTG 175 (218)
T ss_dssp EEEBTTTTBTTTHHHHHHHHHHHC
T ss_pred EEEecCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999987643
No 127
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.82 E-value=6.9e-20 Score=179.13 Aligned_cols=156 Identities=20% Similarity=0.178 Sum_probs=113.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|++|+|||||+++|+...... . ... |+..... ..+..++..+.+++|||||+++|
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-----------~----~~~--t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~ 86 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPE-----------V----YVP--TVFENYI-ADIEVDGKQVELALWDTAGQEDY 86 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCS-----------S----CCC--SSCCCCE-EEEEETTEEEEEEEECCCCSGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCc-----------c----cCC--cccceEE-EEEEECCEEEEEEEEECCCchhH
Confidence 4699999999999999999998732110 0 011 1111111 11333445678999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhH-HHHHHHHHc---CCCeEEEEeccCCCCCC--------------chHHHHH
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALEN---NLEIIPVLNKIDLPGAE--------------PSRVARE 226 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~-~~~~~~~~~---~~piIvViNKiDl~~~~--------------~~~~~~e 226 (646)
...+..+++.+|++++|+|+++..+++.. ..|...+.. ++|+++|+||+|+.... ..+...+
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 166 (201)
T 2gco_A 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRD 166 (201)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHH
Confidence 99999999999999999999998777776 566555543 89999999999987541 1122333
Q ss_pred HHHHhCCCcccccccccccccchhHHHHHHHHhC
Q 043429 227 IEEVIGLDCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 227 l~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+.+.++. .+++++||++|.|+++++++|.+.+
T Consensus 167 ~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 167 MANRISA--FGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp HHHHTTC--SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHhCCC--cEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 4444443 2589999999999999999998754
No 128
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.82 E-value=1.1e-19 Score=175.20 Aligned_cols=155 Identities=24% Similarity=0.323 Sum_probs=107.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|++|+|||||+++|+..... ... .+ |.... ....+..++..+.+++|||||+.+|.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~~-----------~~~-----~~-t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~ 83 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHFV-----------DEY-----DP-TIEDS-YRKQVVIDGETCLLDILDTAGQEEYS 83 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC-----------SCC-----CT-TCCEE-EEEEEEETTEEEEEEEEECCC-----
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCc-----------ccc-----CC-ccceE-EEEEEEECCEEEEEEEEECCChHHHH
Confidence 59999999999999999999873211 000 01 11111 11223344556889999999999999
Q ss_pred hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCC-chHHHHHHHHHhCCCccccc
Q 043429 166 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAE-PSRVAREIEEVIGLDCTNAI 239 (646)
Q Consensus 166 ~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~-~~~~~~el~~~l~~~~~~i~ 239 (646)
..+..+++.+|++++|+|+++..+++....|...+. .++|+++|+||+|+.... ..+..+++.+.+++ +++
T Consensus 84 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~ 160 (190)
T 3con_A 84 AMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGI---PFI 160 (190)
T ss_dssp ------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTC---CEE
T ss_pred HHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCC---eEE
Confidence 999999999999999999999888887777765544 279999999999987532 34445566666665 589
Q ss_pred ccccccccchhHHHHHHHHhCC
Q 043429 240 LCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 240 ~vSAk~g~GV~eLl~~I~~~ip 261 (646)
++||++|.|+++++++|.+.+.
T Consensus 161 ~~Sa~~~~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 161 ETSAKTRQGVEDAFYTLVREIR 182 (190)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988653
No 129
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.82 E-value=9e-20 Score=191.18 Aligned_cols=161 Identities=23% Similarity=0.279 Sum_probs=122.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
..-.|+|+|++|+|||||+|+|++....+ .....++|.........+ +.++.++||||||+.+
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i--------------~s~~~~tT~~~~~~~~~~---~~~~~i~lvDTPG~~~ 71 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSI--------------ISPKAGTTRMRVLGVKNI---PNEAQIIFLDTPGIYE 71 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSC--------------CCSSSCCCCSCEEEEEEE---TTTEEEEEEECCCCCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccc--------------cCCCCCceeeEEEEEEec---CCCCeEEEEECcCCCc
Confidence 34589999999999999999998743221 123345555443322222 1278999999999977
Q ss_pred ch----------hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHH-HcCCCeEEEEeccCCC-C-CCchHHHHHHHHH
Q 043429 164 FS----------YEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-ENNLEIIPVLNKIDLP-G-AEPSRVAREIEEV 230 (646)
Q Consensus 164 f~----------~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~-~~~~piIvViNKiDl~-~-~~~~~~~~el~~~ 230 (646)
+. ..+..+++.+|++++|+|++++.+.++...|...+ ..++|+++|+||+|+. . .......+++.+.
T Consensus 72 ~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~ 151 (308)
T 3iev_A 72 PKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKK 151 (308)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHh
Confidence 55 56677899999999999999999999988855444 4589999999999986 3 3345556677776
Q ss_pred hCCCcccccccccccccchhHHHHHHHHhCCC
Q 043429 231 IGLDCTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 231 l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
++ ...+++++||++|.|+++++++|.+.++.
T Consensus 152 ~~-~~~~i~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 152 HP-ELTEIVPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp CT-TCCCEEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred cc-CCCeEEEEeCCCCCCHHHHHHHHHHhCcc
Confidence 64 23469999999999999999999999875
No 130
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.82 E-value=5.7e-20 Score=173.94 Aligned_cols=150 Identities=20% Similarity=0.269 Sum_probs=105.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|++|+|||||+++|++.... .+...++|+......+.+. +..+++|||||+.+|.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~---------------~~~~~~~t~~~~~~~~~~~----~~~l~i~Dt~G~~~~~ 64 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVY---------------IGNWPGVTVEKKEGEFEYN----GEKFKVVDLPGVYSLT 64 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSS---------------CC-----CCCCCEEEEEET----TEEEEEEECCCCSCSS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCee---------------ccCCCCcceeeeEEEEEEC----CcEEEEEECCCcccCC
Confidence 58999999999999999999763211 1223455655544444443 5789999999999875
Q ss_pred ------hhHhhhhh--hccceEEEEeCCCCccHhhHHHHH-HHHHcCCCeEEEEeccCCCCCC-chHHHHHHHHHhCCCc
Q 043429 166 ------YEVSRSLA--ACEGALLVVDASQGVEAQTLANVY-LALENNLEIIPVLNKIDLPGAE-PSRVAREIEEVIGLDC 235 (646)
Q Consensus 166 ------~~~~~~l~--~ad~~IlVvDa~~g~~~qt~~~~~-~~~~~~~piIvViNKiDl~~~~-~~~~~~el~~~l~~~~ 235 (646)
.....+++ .+|++++|+|+++.. ....|. ...+.++|+++|+||+|+.... .....+++.+.++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-- 139 (165)
T 2wji_A 65 ANSIDEIIARDYIINEKPDLVVNIVDATALE---RNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGV-- 139 (165)
T ss_dssp SSSHHHHHHHHHHHHHCCSEEEEEEETTCHH---HHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTS--
T ss_pred CcchhHHHHHHHHhcCCCCEEEEEecCCchh---HhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhCC--
Confidence 22344554 789999999998732 222343 3345689999999999985321 11124566666764
Q ss_pred ccccccccccccchhHHHHHHHHhC
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++++||++|.|++++|++|.+.+
T Consensus 140 -~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 140 -KVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp -CEEECBGGGTBSHHHHHHHHHHHT
T ss_pred -CEEEEEcCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998875
No 131
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.82 E-value=2.6e-21 Score=188.77 Aligned_cols=160 Identities=18% Similarity=0.239 Sum_probs=113.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
+...+|+++|++|+|||||+++|+... ...+....++...... .+..++..+.++||||||+.
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~---------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~ 93 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDT---------------YTESYISTIGVDFKIR--TIELDGKTIKLQIWDTAGQE 93 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCC---------------CCCHHHHHHCCSEEEE--EEEETTEEEEEEEECCTTCT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC---------------CCCCcCCcccceEEEE--EEEECCEEEEEEEEECCCcH
Confidence 456899999999999999999986421 1111222333333322 33344456889999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc----CCCeEEEEeccCCCCCCc--hHHHHHHHHHhCCCcc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPGAEP--SRVAREIEEVIGLDCT 236 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~----~~piIvViNKiDl~~~~~--~~~~~el~~~l~~~~~ 236 (646)
+|...+..+++.+|++|+|+|+++..+++....|...+.. ++|+++|+||+|+..... .+..+++.+.++.
T Consensus 94 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~--- 170 (199)
T 3l0i_B 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI--- 170 (199)
T ss_dssp TCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTC---
T ss_pred hHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCC---
Confidence 9999999999999999999999999998888888777654 789999999999865432 2233455555554
Q ss_pred cccccccccccchhHHHHHHHHhCCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+++++||++|.||+++|++|.+.+..
T Consensus 171 ~~~~vSA~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 171 PFLETSAKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp CBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999987754
No 132
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.82 E-value=3.5e-20 Score=178.79 Aligned_cols=154 Identities=19% Similarity=0.243 Sum_probs=114.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
+..+|+++|++|+|||||+++|+... . .+ ...|+......+.+. ++.+++|||||+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~--~---------~~-------~~~t~~~~~~~~~~~----~~~~~~~Dt~G~~~ 78 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGD--V---------VT-------TVPTVGVNLETLQYK----NISFEVWDLGGQTG 78 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSC--C---------EE-------ECSSTTCCEEEEEET----TEEEEEEEECCSSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCC--C---------CC-------cCCCCceEEEEEEEC----CEEEEEEECCCCHh
Confidence 45799999999999999999995421 1 01 011333333334443 78999999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCCchHHHHHHHHHhCC-----
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGL----- 233 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~~~~~~~el~~~l~~----- 233 (646)
+...+..+++.+|++++|+|++++.+++....|..... .+.|+++|+||+|+...... +++.+.++.
T Consensus 79 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~ 155 (189)
T 2x77_A 79 VRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASE---AEIAEQLGVSSIMN 155 (189)
T ss_dssp SCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCS
T ss_pred HHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCH---HHHHHHhChhhccC
Confidence 99888899999999999999999888877766655443 37899999999999765432 233333321
Q ss_pred CcccccccccccccchhHHHHHHHHhCCC
Q 043429 234 DCTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 234 ~~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
...+++++||++|.|+++++++|.+.++.
T Consensus 156 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 156 RTWTIVKSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp SCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CceEEEEccCCCccCHHHHHHHHHHHHHh
Confidence 12368999999999999999999987643
No 133
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.82 E-value=1.3e-19 Score=172.60 Aligned_cols=150 Identities=12% Similarity=0.173 Sum_probs=108.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|++|+|||||+++|+..... + . ..|+... ....+..++..+.+++|||||+++
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~-----------~-~------~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~- 66 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQ-----------V-L------EKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD- 66 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCC-----------C-C------SSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-----------C-c------CCCccee-EEEEEEECCEEEEEEEEECCCCch-
Confidence 469999999999999999999873211 1 0 0122211 122333455568899999999987
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHH---H----cCCCeEEEEeccCCCC----CCchHHHHHHHHHhCC
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL---E----NNLEIIPVLNKIDLPG----AEPSRVAREIEEVIGL 233 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~---~----~~~piIvViNKiDl~~----~~~~~~~~el~~~l~~ 233 (646)
..+++.+|++|+|+|+++..+++....|...+ . .++|+++|+||+|+.. ....+..+++...++
T Consensus 67 ----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~- 141 (178)
T 2iwr_A 67 ----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMK- 141 (178)
T ss_dssp ----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHS-
T ss_pred ----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhc-
Confidence 46788999999999999998888888764332 2 3789999999999842 122333344544442
Q ss_pred CcccccccccccccchhHHHHHHHHhC
Q 043429 234 DCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 234 ~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
..+++++||++|.|++++|++|.+.+
T Consensus 142 -~~~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 142 -RCSYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp -SEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred -CCeEEEEeccccCCHHHHHHHHHHHH
Confidence 23689999999999999999998765
No 134
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.81 E-value=9.4e-20 Score=179.40 Aligned_cols=158 Identities=16% Similarity=0.165 Sum_probs=116.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
+...+|+++|++|+|||||+++|+..... .. ...|+.... ...+..++..+.++||||||+.
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~-----------~~------~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~ 87 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFP-----------EN------YVPTVFENY-TASFEIDTQRIELSLWDTSGSP 87 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC-----------SS------CCCCSEEEE-EEEEESSSSEEEEEEEEECCSG
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCC-----------CC------cCCccceeE-EEEEEECCEEEEEEEEeCCCcH
Confidence 34579999999999999999999873211 00 111222222 2234445567899999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhH-HHHHHHHH---cCCCeEEEEeccCCCCC--------------CchHHH
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE---NNLEIIPVLNKIDLPGA--------------EPSRVA 224 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~-~~~~~~~~---~~~piIvViNKiDl~~~--------------~~~~~~ 224 (646)
+|...+..+++.+|++|+|+|+++..++... ..|...+. .+.|+++|+||+|+... ...+..
T Consensus 88 ~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 167 (205)
T 1gwn_A 88 YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQG 167 (205)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH
T ss_pred hhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHH
Confidence 9998888999999999999999998888777 56765554 37899999999998642 112334
Q ss_pred HHHHHHhCCCcccccccccc-cccchhHHHHHHHHhC
Q 043429 225 REIEEVIGLDCTNAILCSAK-EGIGINEILNAIVKRI 260 (646)
Q Consensus 225 ~el~~~l~~~~~~i~~vSAk-~g~GV~eLl~~I~~~i 260 (646)
+++.+.++. .+++++||+ +|.||+++|++|.+.+
T Consensus 168 ~~~~~~~~~--~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 168 ANMAKQIGA--ATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHHHHHHTC--SEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC--CEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 455555552 358999999 6999999999998753
No 135
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.81 E-value=9.8e-20 Score=180.06 Aligned_cols=158 Identities=16% Similarity=0.177 Sum_probs=101.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
...+|+++|++|+|||||+++|+..... ... ..|+... ....+..++..+.++||||||+.+
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~-----------~~~------~~t~~~~-~~~~~~~~~~~~~l~l~Dt~G~~~ 94 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFP-----------ESY------TPTVFER-YMVNLQVKGKPVHLHIWDTAGQDD 94 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC------------------------CCCCCEE-EEEEEEETTEEEEEEEEEC-----
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC-----------CCC------CCcccee-EEEEEEECCEEEEEEEEECCCchh
Confidence 3469999999999999999999862110 000 0122111 122334455577899999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHH-HHHHHHHc---CCCeEEEEeccCCCCCCc--------------hHHHH
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLALEN---NLEIIPVLNKIDLPGAEP--------------SRVAR 225 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~-~~~~~~~~---~~piIvViNKiDl~~~~~--------------~~~~~ 225 (646)
|...+..+++.+|++++|+|++++.+++... .|...+.. ++|+++|+||+|+..... .+...
T Consensus 95 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 174 (214)
T 2j1l_A 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQ 174 (214)
T ss_dssp ----------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHH
T ss_pred hhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHH
Confidence 9999999999999999999999988887775 56655543 899999999999865421 12223
Q ss_pred HHHHHhCCCcccccccccccccchhHHHHHHHHhCC
Q 043429 226 EIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 226 el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
++.+.++. .+++++||++|.||++++++|.+.+.
T Consensus 175 ~~~~~~~~--~~~~~~SA~~g~gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 175 EMARSVGA--VAYLECSARLHDNVHAVFQEAAEVAL 208 (214)
T ss_dssp HHHHHTTC--SEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHhcCC--CEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 44444543 36899999999999999999988764
No 136
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.81 E-value=2.6e-19 Score=176.29 Aligned_cols=157 Identities=25% Similarity=0.341 Sum_probs=106.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCC-CeEEEEEeCCCCc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENE-PFCLNLIDTPGHV 162 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~-~~~l~liDTPG~~ 162 (646)
+..+|+++|++|+|||||+++|+..... . ...|+...... +..++. .+.+++|||||+.
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~-----------~-------~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR-----------D-------TQTSITDSSAI--YKVNNNRGNSLTLIDLPGHE 65 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCC-----------C-------BCCCCSCEEEE--EECSSTTCCEEEEEECCCCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc-----------c-------ccCCcceeeEE--EEecCCCccEEEEEECCCCh
Confidence 3469999999999999999999873210 0 11122222222 333333 6889999999999
Q ss_pred cchh-hHhhhhhhccceEEEEeCCCCc-cHhh-HHHHHHHHH------cCCCeEEEEeccCCCCCC-chHHHHHHHHHhC
Q 043429 163 DFSY-EVSRSLAACEGALLVVDASQGV-EAQT-LANVYLALE------NNLEIIPVLNKIDLPGAE-PSRVAREIEEVIG 232 (646)
Q Consensus 163 df~~-~~~~~l~~ad~~IlVvDa~~g~-~~qt-~~~~~~~~~------~~~piIvViNKiDl~~~~-~~~~~~el~~~l~ 232 (646)
+|.. .+..+++.+|++|+|+|+++.. +... ...|...+. .++|+++|+||+|+.... .+...+.+.+.++
T Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~ 145 (214)
T 2fh5_B 66 SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELN 145 (214)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHH
Confidence 9987 6778899999999999998732 1222 233433322 368999999999997654 3444444443332
Q ss_pred ----------------------CC-------------cccccccccccc------cchhHHHHHHHHhC
Q 043429 233 ----------------------LD-------------CTNAILCSAKEG------IGINEILNAIVKRI 260 (646)
Q Consensus 233 ----------------------~~-------------~~~i~~vSAk~g------~GV~eLl~~I~~~i 260 (646)
.. ..++++|||++| .||++++++|.+.+
T Consensus 146 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 146 TLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp HHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred HHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 00 346899999999 99999999998753
No 137
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.81 E-value=5.8e-20 Score=187.60 Aligned_cols=151 Identities=19% Similarity=0.265 Sum_probs=114.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
+++|+++|++|+|||||+++|++.. ......+|+|+......+.+. +..+++|||||+.++
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~---------------~~v~~~pg~Tv~~~~~~~~~~----~~~~~lvDtpG~~~~ 61 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNAN---------------QRVGNWPGVTVEKKTGEFLLG----EHLIEITDLPGVYSL 61 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTS---------------EEEEECTTSSSEEEEEEEEET----TEEEEEEECCCCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC---------------CCccCCCCceEEEEEEEEEEC----CeEEEEEeCCCcccc
Confidence 3689999999999999999997631 123345677877766666554 679999999999987
Q ss_pred hh----------hHhhhh--hhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC-chHHHHHHHHHh
Q 043429 165 SY----------EVSRSL--AACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE-PSRVAREIEEVI 231 (646)
Q Consensus 165 ~~----------~~~~~l--~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~-~~~~~~el~~~l 231 (646)
.. ....++ ..+|++|+|+|+++. ......+....+.++|+++|+||+|+.... .....+++.+.+
T Consensus 62 ~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l 139 (256)
T 3iby_A 62 VANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLL 139 (256)
T ss_dssp C------CHHHHHHHHHHHHSCCSEEEEEEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHc
Confidence 64 234455 789999999999983 233333444555799999999999975432 222345677778
Q ss_pred CCCcccccccccccccchhHHHHHHHHh
Q 043429 232 GLDCTNAILCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 232 ~~~~~~i~~vSAk~g~GV~eLl~~I~~~ 259 (646)
+. +++++||++|.|+++++++|.+.
T Consensus 140 g~---~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 140 GC---SVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp CS---CEEECBGGGTBSHHHHHHHHHTC
T ss_pred CC---CEEEEECCCCCCHHHHHHHHHhh
Confidence 76 59999999999999999999887
No 138
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.79 E-value=2.6e-19 Score=172.21 Aligned_cols=154 Identities=19% Similarity=0.278 Sum_probs=112.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|++|+|||||+++|++.. ...+...++|+......+.+. +..+++|||||+.+|
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~---------------~~~~~~~~~t~~~~~~~~~~~----~~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGEN---------------VYIGNWPGVTVEKKEGEFEYN----GEKFKVVDLPGVYSL 67 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTC---------------EEEEECTTSCCEEEEEEEEET----TEEEEEEECCCCSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---------------ccccCCCCeeccceEEEEEeC----CcEEEEEECCCcCcc
Confidence 4699999999999999999997621 112234566666555555443 689999999999988
Q ss_pred h------hhHhhhhh--hccceEEEEeCCCCccHhhHHHHH-HHHHcCCCeEEEEeccCCCCCC-chHHHHHHHHHhCCC
Q 043429 165 S------YEVSRSLA--ACEGALLVVDASQGVEAQTLANVY-LALENNLEIIPVLNKIDLPGAE-PSRVAREIEEVIGLD 234 (646)
Q Consensus 165 ~------~~~~~~l~--~ad~~IlVvDa~~g~~~qt~~~~~-~~~~~~~piIvViNKiDl~~~~-~~~~~~el~~~l~~~ 234 (646)
. .....++. .+|++++|+|+++ .+....|. .....+.|+++|+||+|+.... .....+++.+.++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~- 143 (188)
T 2wjg_A 68 TANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGV- 143 (188)
T ss_dssp SSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTS-
T ss_pred ccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhCC-
Confidence 5 23445554 3899999999985 33333443 3344689999999999975321 12234566666775
Q ss_pred cccccccccccccchhHHHHHHHHhCCCC
Q 043429 235 CTNAILCSAKEGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 235 ~~~i~~vSAk~g~GV~eLl~~I~~~ip~P 263 (646)
+++++||++|.|+++++++|.+.++..
T Consensus 144 --~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 144 --KVVPLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp --CEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred --CeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 589999999999999999999987653
No 139
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.79 E-value=2.2e-19 Score=174.75 Aligned_cols=162 Identities=12% Similarity=0.115 Sum_probs=105.6
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCC
Q 043429 81 PASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPG 160 (646)
Q Consensus 81 ~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG 160 (646)
+.++..+|+++|.+|+|||||++++.+... .....+.+.........+ ..+..+.+++|||||
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~----------------~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~Dt~G 78 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMS----------------PNETLFLESTNKIYKDDI-SNSSFVNFQIWDFPG 78 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCC----------------GGGGGGCCCCCSCEEEEE-CCTTSCCEEEEECCS
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCC----------------Ccceeeeccccceeeeec-cCCCeeEEEEEECCC
Confidence 445567999999999999999998765210 011111122212221111 124578999999999
Q ss_pred CccchhhH---hhhhhhccceEEEEeCCCC--ccHhhHHHHHHHH---HcCCCeEEEEeccCCCCCCc-----hHH----
Q 043429 161 HVDFSYEV---SRSLAACEGALLVVDASQG--VEAQTLANVYLAL---ENNLEIIPVLNKIDLPGAEP-----SRV---- 223 (646)
Q Consensus 161 ~~df~~~~---~~~l~~ad~~IlVvDa~~g--~~~qt~~~~~~~~---~~~~piIvViNKiDl~~~~~-----~~~---- 223 (646)
+++|.... ..+++.+|++|+|+|++++ ........|.... ..++|+++|+||+|+...+. ..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~ 158 (196)
T 3llu_A 79 QMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRA 158 (196)
T ss_dssp SCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred CHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHH
Confidence 99988776 7999999999999999997 2233333343332 23899999999999865321 111
Q ss_pred HHHHHHHhC-CCcccccccccccccchhHHHHHHHHhC
Q 043429 224 AREIEEVIG-LDCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 224 ~~el~~~l~-~~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
.+++.+... ....+++++||++ .||+++|+.|++.+
T Consensus 159 ~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 159 NDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred HHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 122222110 1234689999999 99999999998765
No 140
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.79 E-value=1.7e-19 Score=185.90 Aligned_cols=154 Identities=20% Similarity=0.250 Sum_probs=115.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+++|++|+|||||+|+|++.. ..+....|+|+......+.+. +..+.+|||||+.++.
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~---------------~~v~~~~g~t~~~~~~~~~~~----~~~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR---------------QRVGNWAGVTVERKEGQFSTT----DHQVTLVDLPGTYSLT 64 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC---------------EEEEECTTSSSEEEEEEEECS----SCEEEEEECCCCSCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---------------cccCCCCCeeEEEEEEEEEeC----CCceEEEECcCCCccc
Confidence 589999999999999999997631 123445677877666655543 6789999999999877
Q ss_pred h---------h-Hhhhh--hhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC-chHHHHHHHHHhC
Q 043429 166 Y---------E-VSRSL--AACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE-PSRVAREIEEVIG 232 (646)
Q Consensus 166 ~---------~-~~~~l--~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~-~~~~~~el~~~l~ 232 (646)
. . ...++ ..+|++++|+|+++.. .....+....+.++|+++|+||+|+.... .....+++.+.++
T Consensus 65 ~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~--~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg 142 (274)
T 3i8s_A 65 TISSQTSLDEQIACHYILSGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLG 142 (274)
T ss_dssp C----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHH--HHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHT
T ss_pred cccccCCHHHHHHHHHHhhcCCCEEEEEecCCChH--HHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcC
Confidence 2 1 12222 6899999999999732 33334445556799999999999985432 2223467777787
Q ss_pred CCcccccccccccccchhHHHHHHHHhCCCC
Q 043429 233 LDCTNAILCSAKEGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 233 ~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P 263 (646)
. +++++||++|.|+++++++|.+.++..
T Consensus 143 ~---~~i~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 143 C---PVIPLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp S---CEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred C---CEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 5 599999999999999999999888653
No 141
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.79 E-value=7e-19 Score=175.66 Aligned_cols=159 Identities=16% Similarity=0.191 Sum_probs=104.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
....+|+++|.+|+|||||+++|+.... ......+.|.........+. ...+.||||||+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~---------------~~~~~~~~t~~~~~~~~~~~----~~~~~l~DtpG~~ 87 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANV---------------DVQSYSFTTKNLYVGHFDHK----LNKYQIIDTPGLL 87 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCE---------------EEECC-----CEEEEEEEET----TEEEEEEECTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC---------------ccCCCCCcceeeeeeeeecC----CCeEEEEECCCCc
Confidence 4568999999999999999999976211 11122344444433333332 6889999999994
Q ss_pred cch---------hhHhhhhhhccceEEEEeCCCCccHhh--HHHHHHHHHc---CCCeEEEEeccCCCCCCc--hHH---
Q 043429 163 DFS---------YEVSRSLAACEGALLVVDASQGVEAQT--LANVYLALEN---NLEIIPVLNKIDLPGAEP--SRV--- 223 (646)
Q Consensus 163 df~---------~~~~~~l~~ad~~IlVvDa~~g~~~qt--~~~~~~~~~~---~~piIvViNKiDl~~~~~--~~~--- 223 (646)
++. ..+..++..+|++|+|+|++++.++.. ...|...+.. ++|+++|+||+|+..... ...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 167 (228)
T 2qu8_A 88 DRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLL 167 (228)
T ss_dssp TSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHH
T ss_pred CcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHH
Confidence 321 122345677899999999998866542 2234444443 899999999999875432 222
Q ss_pred HHHHHHHhCCCcccccccccccccchhHHHHHHHHhCC
Q 043429 224 AREIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 224 ~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
.+++....+ ...+++++||++|.||++++++|.+.+.
T Consensus 168 ~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 168 IKQILDNVK-NPIKFSSFSTLTGVGVEQAKITACELLK 204 (228)
T ss_dssp HHHHHHHCC-SCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCceEEEEecccCCCHHHHHHHHHHHHH
Confidence 223333222 1246999999999999999999988663
No 142
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=5.3e-19 Score=175.22 Aligned_cols=159 Identities=18% Similarity=0.218 Sum_probs=112.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
...+|+|+|.+|+|||||+++|+.....+. .. .. ++...........++..+.+.+|||+|...
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~---------~~-----~~--~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~ 99 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMD---------SD-----CE--VLGEDTYERTLMVDGESATIILLDMWENKG 99 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTC---------CC----------CCTTEEEEEEEETTEEEEEEEECCTTTTH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCC---------Cc-----CC--ccceeeEEEEEEECCeeeEEEEeecCCCcc
Confidence 457999999999999999999975322111 00 00 111122222334455567889999999887
Q ss_pred -chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCc
Q 043429 164 -FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDC 235 (646)
Q Consensus 164 -f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~ 235 (646)
+......+++.+|++|+|+|.++..+++....|...+. .++|+++|+||+|+.... ..+..+.+...++.
T Consensus 100 ~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~-- 177 (211)
T 2g3y_A 100 ENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDC-- 177 (211)
T ss_dssp HHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC--
T ss_pred hhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCC--
Confidence 44455567788999999999999888888877765443 378999999999996432 22233344455554
Q ss_pred ccccccccccccchhHHHHHHHHhCC
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+++++||++|.||+++|++|++.+.
T Consensus 178 -~~~e~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 178 -KFIETSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp -EEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999988763
No 143
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.79 E-value=4.8e-19 Score=187.37 Aligned_cols=152 Identities=19% Similarity=0.226 Sum_probs=112.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+|+|++|+|||||+++|+... +... ..|+......+.+. ++.++||||||+++|
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~-----------~~~~-------~pT~~~~~~~~~~~----~~~l~i~Dt~G~~~~ 222 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGE-----------IVTT-------IPTIGFNVETVEYK----NISFTVWDVGGQDKI 222 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSC-----------CEEE-------EEETTEEEEEEEET----TEEEEEEECC-----
T ss_pred cceEEEECCCCccHHHHHHHHhCCC-----------CCCc-------ccccceEEEEEecC----cEEEEEEECCCCHhH
Confidence 4589999999999999999996521 1111 12555554444443 789999999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCCchHHHHHHHHHhCCC-----
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLD----- 234 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~----- 234 (646)
...+..+++.+|++|+|+|+++..++.....|..... .++|+++|+||+|+.+.... +++...++..
T Consensus 223 ~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~---~~i~~~~~~~~~~~~ 299 (329)
T 3o47_A 223 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRHR 299 (329)
T ss_dssp CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHHTCTTCCSS
T ss_pred HHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCH---HHHHHHhchhhhhcC
Confidence 9999999999999999999999888877766654443 27899999999999876432 3344444432
Q ss_pred cccccccccccccchhHHHHHHHHhCC
Q 043429 235 CTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 235 ~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
..+++++||++|.||+++|++|.+.+.
T Consensus 300 ~~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 300 NWYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 236899999999999999999998764
No 144
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.79 E-value=1.5e-19 Score=172.63 Aligned_cols=151 Identities=21% Similarity=0.228 Sum_probs=104.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+|+|++|+|||||+++|+...... .....++|.+.....+.+. +..+.+|||||+.++.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~--------------~~~~~~~t~~~~~~~~~~~----~~~~~l~Dt~G~~~~~ 66 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAI--------------VTDIAGTTRDVLREHIHID----GMPLHIIDTAGLREAS 66 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSC--------------CCSSTTCCCSCEEEEEEET----TEEEEEEECCCCSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcce--------------eeCCCCceeceeeEEEEEC----CeEEEEEECCCcccch
Confidence 589999999999999999998632111 1223455555444444433 5678999999997653
Q ss_pred hh--------HhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH---cCCCeEEEEeccCCCCCCchHHHHHHHHHhCCC
Q 043429 166 YE--------VSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLD 234 (646)
Q Consensus 166 ~~--------~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~---~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~ 234 (646)
.. ...+++.+|++++|+|++++.+++....|....+ .++|+++|+||+|+.+..... ....
T Consensus 67 ~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~--------~~~~ 138 (172)
T 2gj8_A 67 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM--------SEVN 138 (172)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEE--------EEET
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhhh--------hhcc
Confidence 22 2246789999999999999887765433333333 268999999999985432110 0012
Q ss_pred cccccccccccccchhHHHHHHHHhCCC
Q 043429 235 CTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 235 ~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
..+++++||++|.|+++++++|.+.+..
T Consensus 139 ~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 139 GHALIRLSARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp TEEEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred CCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 2468999999999999999999988754
No 145
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.79 E-value=7e-19 Score=193.33 Aligned_cols=155 Identities=24% Similarity=0.338 Sum_probs=110.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc-
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF- 164 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df- 164 (646)
++|+|+|.+|+|||||+|+|++....+ ++...|+|.+.....+.|. +..+++|||||+..+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~--------------v~~~~g~T~d~~~~~~~~~----~~~~~l~DT~G~~~~~ 63 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAI--------------VEDEEGVTRDPVQDTVEWY----GKTFKLVDTCGVFDNP 63 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC----------------------------CCSEEEEEET----TEEEEEEECTTTTSSG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCce--------------ecCCCCCccceeeEEEEEC----CeEEEEEECCCccccc
Confidence 589999999999999999998632211 2445688888777777775 678999999998752
Q ss_pred --------hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHH-HHHhCCCc
Q 043429 165 --------SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREI-EEVIGLDC 235 (646)
Q Consensus 165 --------~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el-~~~l~~~~ 235 (646)
...+..+++.||++|+|+|++++.+..+........+.++|+++|+||+|+... ...+. .+...+..
T Consensus 64 ~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~----~~~~~~~~~~~lg~ 139 (439)
T 1mky_A 64 QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE----FEREVKPELYSLGF 139 (439)
T ss_dssp GGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH----HHHHTHHHHGGGSS
T ss_pred cchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc----cHHHHHHHHHhcCC
Confidence 344567899999999999999998877655544455569999999999997532 11122 23332222
Q ss_pred ccccccccccccchhHHHHHHHHhCCC
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
.+++++||++|.|+++|+++|.+.++.
T Consensus 140 ~~~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 140 GEPIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp CSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCEEEEeccCCCCHHHHHHHHHHhccc
Confidence 358999999999999999999988863
No 146
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.79 E-value=2.6e-19 Score=172.06 Aligned_cols=153 Identities=22% Similarity=0.207 Sum_probs=108.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCC-----
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPG----- 160 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG----- 160 (646)
.+|+++|++|+|||||+++|++... ..+..+|+|....... + . .+++|||||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~---------------~~~~~~~~t~~~~~~~--~-----~-~~~l~Dt~G~~~~~ 58 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKV---------------RRGKRPGVTRKIIEIE--W-----K-NHKIIDMPGFGFMM 58 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCC---------------SSSSSTTCTTSCEEEE--E-----T-TEEEEECCCBSCCT
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCC---------------ccCCCCCccceeEEEe--c-----C-CEEEEECCCccccc
Confidence 5899999999999999999986321 1222345555443222 1 1 688999999
Q ss_pred ------CccchhhHhhhhhh-ccceEEEEeCCCCccHhhH-HHHH-------------HHHHcCCCeEEEEeccCCCCCC
Q 043429 161 ------HVDFSYEVSRSLAA-CEGALLVVDASQGVEAQTL-ANVY-------------LALENNLEIIPVLNKIDLPGAE 219 (646)
Q Consensus 161 ------~~df~~~~~~~l~~-ad~~IlVvDa~~g~~~qt~-~~~~-------------~~~~~~~piIvViNKiDl~~~~ 219 (646)
++.+...+..+++. ++++++|+|..+..++... ..|. .....++|+++|+||+|+....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (190)
T 2cxx_A 59 GLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV 138 (190)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred cCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH
Confidence 45566666677776 7777776666665555443 3332 2234589999999999997655
Q ss_pred chHHHHHHHHHhCCCc----ccccccccccccchhHHHHHHHHhCCC
Q 043429 220 PSRVAREIEEVIGLDC----TNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 220 ~~~~~~el~~~l~~~~----~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
.+..+++.+.++.+. .+++++||++|.|+++++++|.+.+..
T Consensus 139 -~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 139 -QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp -HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 555677888888742 257999999999999999999987643
No 147
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.78 E-value=3.7e-19 Score=181.79 Aligned_cols=153 Identities=21% Similarity=0.326 Sum_probs=114.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|++|+|||||+++|++.. ......+|+|+......+.+. +..+++|||||+.++
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~---------------~~~~~~pg~tv~~~~~~~~~~----~~~~~l~DtpG~~~~ 65 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK---------------QYVANWPGVTVEKKEGVFTYK----GYTINLIDLPGTYSL 65 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC---------------EEEEECTTSCCEEEEEEEEET----TEEEEEEECCCCSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC---------------CcccCCCCceEEEEEEEEEEC----CeEEEEEECCCcCcc
Confidence 4689999999999999999997621 112334578887766655543 689999999999987
Q ss_pred hhh------Hhhhh--hhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC-chHHHHHHHHHhCCCc
Q 043429 165 SYE------VSRSL--AACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE-PSRVAREIEEVIGLDC 235 (646)
Q Consensus 165 ~~~------~~~~l--~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~-~~~~~~el~~~l~~~~ 235 (646)
... ...++ ..+|++++|+|+++... ....+....+.++|+++|+||+|+.... .....+++.+.+++
T Consensus 66 ~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~--~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~-- 141 (258)
T 3a1s_A 66 GYSSIDEKIARDYLLKGDADLVILVADSVNPEQ--SLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGI-- 141 (258)
T ss_dssp CSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHH--HHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCS--
T ss_pred CCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhh--HHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcCC--
Confidence 642 23444 47999999999998533 2334445556799999999999975321 11224677777876
Q ss_pred ccccccccccccchhHHHHHHHHhCC
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+++++||++|.|+++++++|.+.+.
T Consensus 142 -~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 142 -PVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp -CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -CEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 5999999999999999999998764
No 148
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.78 E-value=1e-18 Score=183.08 Aligned_cols=159 Identities=18% Similarity=0.236 Sum_probs=121.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc-
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF- 164 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df- 164 (646)
.+|+++|.+|+|||||+++|+...... .....+.|++.....+.+ . +++.+++|||||+.+|
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~--------------~~~~~~~Ti~~~~~~~~~--~-~~~~l~i~Dt~G~~~~~ 66 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAF--------------DTRRLGATIDVEHSHLRF--L-GNMTLNLWDCGGQDVFM 66 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTG--------------GGGGCCCCCSEEEEEEEE--T-TTEEEEEEEECCSHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--------------cccCcCCccceEEEEEEe--C-CceEEEEEECCCcHHHh
Confidence 689999999999999999997632111 223566788777665544 2 3789999999999998
Q ss_pred ----hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH------cCCCeEEEEeccCCCCCCch--------HHHHH
Q 043429 165 ----SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE------NNLEIIPVLNKIDLPGAEPS--------RVARE 226 (646)
Q Consensus 165 ----~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~------~~~piIvViNKiDl~~~~~~--------~~~~e 226 (646)
...+..+++.+|++|+|+|+++..+++.+..|...+. .++|+++|+||+|+...+.. +..++
T Consensus 67 ~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~ 146 (307)
T 3r7w_A 67 ENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSE 146 (307)
T ss_dssp HHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHH
Confidence 5677788899999999999999998888877654433 28999999999999763211 22334
Q ss_pred HHHHhCCCcccccccccccccchhHHHHHHHHhCCC
Q 043429 227 IEEVIGLDCTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 227 l~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+.+.+|.+..+++++||++ .|+.++|..++..+-+
T Consensus 147 ~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 147 TSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp HHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTTCS
T ss_pred HHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHHcC
Confidence 4455565446899999999 8999999998886643
No 149
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.78 E-value=3.3e-19 Score=186.23 Aligned_cols=157 Identities=20% Similarity=0.227 Sum_probs=111.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc--
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV-- 162 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~-- 162 (646)
..+|+|+|++|+|||||+|+|++....+ .....++|.......+.+ .+..+++|||||+.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i--------------~s~~~~tTr~~~~gi~~~----~~~~i~~iDTpG~~~~ 69 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISI--------------TSRKAQTTRHRIVGIHTE----GAYQAIYVDTPGLHME 69 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEE--------------CCCCSSCCSSCEEEEEEE----TTEEEEEESSSSCCHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccc--------------cCCCCCcceeeEEEEEEE----CCeeEEEEECcCCCcc
Confidence 3589999999999999999998742211 111223333222222222 36889999999998
Q ss_pred -------cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCC--CchHHHHHHHHHhCC
Q 043429 163 -------DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGA--EPSRVAREIEEVIGL 233 (646)
Q Consensus 163 -------df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~--~~~~~~~el~~~l~~ 233 (646)
+|...+..+++.+|++++|+|+++ .+.++...+......+.|+++|+||+|+... ...+..+++.+.++.
T Consensus 70 ~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~ 148 (301)
T 1ega_A 70 EKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNF 148 (301)
T ss_dssp HHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCC
T ss_pred chhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCc
Confidence 344455678889999999999988 7777776655555568999999999999762 122223333333333
Q ss_pred CcccccccccccccchhHHHHHHHHhCCC
Q 043429 234 DCTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 234 ~~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
.+++++||++|.|++++++.|.+.+|.
T Consensus 149 --~~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 149 --LDIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp --SEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred --CceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 368999999999999999999998864
No 150
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.78 E-value=1.9e-18 Score=167.99 Aligned_cols=157 Identities=18% Similarity=0.220 Sum_probs=109.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc-
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD- 163 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d- 163 (646)
..+|+++|.+|+|||||+++|++....+.. . ...++.. .....+..++..+.+.+|||+|...
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~---------~-----~~~~~~~--~~~~~~~~~~~~~~l~~~Dt~~~~~~ 69 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDS---------D-----XEVLGED--TYERTLMVDGESATIILLDMWENKGE 69 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC------------------GGGCTT--EEEEEEEETTEEEEEEEECCCCC---
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCc---------c-----cccccee--EEEEEEEECCeEEEEEEEEeccCcch
Confidence 479999999999999999999864322210 0 0111111 1222233455567889999999876
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcc
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCT 236 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~ 236 (646)
+......+++.+|++++|+|.++..+++....|...+. .++|+++|+||+|+.... ..+....+...++.
T Consensus 70 ~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~--- 146 (192)
T 2cjw_A 70 NEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDX--- 146 (192)
T ss_dssp -CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC---
T ss_pred hhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCC---
Confidence 44556678889999999999999888888777765432 378999999999986422 12222334344443
Q ss_pred cccccccccccchhHHHHHHHHhC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+++++||++|.||+++|++|++.+
T Consensus 147 ~~~e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 147 KFIETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ceEEeccccCCCHHHHHHHHHHHH
Confidence 589999999999999999998866
No 151
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.78 E-value=9.6e-19 Score=179.80 Aligned_cols=154 Identities=20% Similarity=0.277 Sum_probs=117.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
+++|+++|++|+|||||+++|++.. ......+|+|+......+.+. +..+++|||||+.+|
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~---------------~~~~~~~~~t~~~~~~~~~~~----~~~~~l~DtpG~~~~ 63 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR---------------QHVGNWPGVTVEKKEGIMEYR----EKEFLVVDLPGIYSL 63 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC---------------EEEEECTTSSCEEEEEEEEET----TEEEEEEECCCCSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC---------------cccCCCCCeEEEeeEEEEEEC----CceEEEEeCCCcccc
Confidence 5799999999999999999997621 123345677777766666654 678999999999988
Q ss_pred hh------hHhhhh--hhccceEEEEeCCCCccHhhHHHHHHHHHcC-CCeEEEEeccCCCCC-CchHHHHHHHHHhCCC
Q 043429 165 SY------EVSRSL--AACEGALLVVDASQGVEAQTLANVYLALENN-LEIIPVLNKIDLPGA-EPSRVAREIEEVIGLD 234 (646)
Q Consensus 165 ~~------~~~~~l--~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~-~piIvViNKiDl~~~-~~~~~~~el~~~l~~~ 234 (646)
.. ....++ ..+|++++|+|++++ .+....+....+.+ +|+++|+||+|+... ......+++.+.++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~- 140 (271)
T 3k53_A 64 TAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGV- 140 (271)
T ss_dssp CSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSS-
T ss_pred ccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcCC-
Confidence 76 344455 569999999999985 34555666667777 999999999996431 111125677778886
Q ss_pred cccccccccccccchhHHHHHHHHhCCC
Q 043429 235 CTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 235 ~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+++++||++|.|++++++++.+.+..
T Consensus 141 --~~~~~Sa~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 141 --PVIPTNAKKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp --CEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred --cEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 48999999999999999999987643
No 152
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.65 E-value=1.6e-20 Score=183.86 Aligned_cols=158 Identities=17% Similarity=0.200 Sum_probs=111.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
.+..+|+++|++|+|||||+++|+..... .. ... |+... ....+..++..+.+++|||||+.
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-----------~~-----~~~-t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~ 89 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP-----------GE-----YIP-TVFDN-YSANVMVDGKPVNLGLWDTAGQE 89 (204)
Confidence 45579999999999999999999762210 00 001 11111 11112233456788899999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHH-HHHHHHHc---CCCeEEEEeccCCCCCCc--------------hHHH
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLALEN---NLEIIPVLNKIDLPGAEP--------------SRVA 224 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~-~~~~~~~~---~~piIvViNKiDl~~~~~--------------~~~~ 224 (646)
+|...+..+++.+|++++|+|++++.+++... .|...+.. ++|+++|+||+|+..... .+..
T Consensus 90 ~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 169 (204)
T 3th5_A 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 169 (204)
Confidence 99999999999999999999999988888775 66555543 789999999999865321 0111
Q ss_pred HHHHHHhCCCcccccccccccccchhHHHHHHHHhC
Q 043429 225 REIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 225 ~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
.++.+.++. .+++++||++|.|+++++++|.+.+
T Consensus 170 ~~~~~~~~~--~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 170 LAMAKEIGA--VKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 122222222 2689999999999999999987653
No 153
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.77 E-value=2.4e-18 Score=189.10 Aligned_cols=193 Identities=19% Similarity=0.169 Sum_probs=133.4
Q ss_pred cccceeEeecCCCCCchHHhhhhhccccc---c--C--CCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccc
Q 043429 50 KHSCIFRVSCQSQATDAELATRVGQDRLL---K--V--PASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFL 122 (646)
Q Consensus 50 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~---~--~--~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~ 122 (646)
+...++.+|+.++.+..++.+.+...... . . ..+...+|+|+|++|+|||||+++|++....
T Consensus 138 g~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~----------- 206 (439)
T 1mky_A 138 GFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERA----------- 206 (439)
T ss_dssp SSCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTE-----------
T ss_pred CCCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCccc-----------
Confidence 33457889999999998887766432211 1 1 1234679999999999999999999873211
Q ss_pred cccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchhh------------HhhhhhhccceEEEEeCCCCccH
Q 043429 123 DNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYE------------VSRSLAACEGALLVVDASQGVEA 190 (646)
Q Consensus 123 d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~~------------~~~~l~~ad~~IlVvDa~~g~~~ 190 (646)
......|+|.+.....+.+. +..+.+|||||+..+... ...+++.+|++++|+|++++.+.
T Consensus 207 ---~v~~~~gtT~d~~~~~i~~~----g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~ 279 (439)
T 1mky_A 207 ---LVSPIPGTTRDPVDDEVFID----GRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITR 279 (439)
T ss_dssp ---EECCCC------CCEEEEET----TEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCH
T ss_pred ---ccCCCCCCcCCceEEEEEEC----CEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCH
Confidence 12345677776665555554 568899999998543221 23577889999999999999888
Q ss_pred hhHHHHHHHHHcCCCeEEEEeccCCCCCCc---hHHHHHHHHHhC-CCcccccccccccccchhHHHHHHHHhC
Q 043429 191 QTLANVYLALENNLEIIPVLNKIDLPGAEP---SRVAREIEEVIG-LDCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 191 qt~~~~~~~~~~~~piIvViNKiDl~~~~~---~~~~~el~~~l~-~~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
+....+..+...++|+++|+||+|+...+. ++..+++.+.+. ....+++++||++|.|++++++.+.+.+
T Consensus 280 ~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 353 (439)
T 1mky_A 280 QDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAY 353 (439)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 876666666678999999999999875432 334445545443 2345799999999999999999998765
No 154
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.77 E-value=5.8e-19 Score=195.19 Aligned_cols=156 Identities=21% Similarity=0.186 Sum_probs=98.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+|+|++|+|||||+|+|++.... .+....|+|.+.....+.+. ++.++||||||+.++.
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a--------------~vs~~~gtT~d~~~~~i~~~----g~~l~liDT~G~~~~~ 295 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERA--------------IVSHMPGTTRDYIEECFIHD----KTMFRLTDTAGLREAG 295 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC--------------------------------CEEEEET----TEEEEEEC--------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCc--------------ccCCCCCceEEEEEEEEEEC----CeEEEEEECCCCCcch
Confidence 47999999999999999999763211 12345667777655555554 7899999999998876
Q ss_pred hhH--------hhhhhhccceEEEEeCCCCccHhhHH---HHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCC
Q 043429 166 YEV--------SRSLAACEGALLVVDASQGVEAQTLA---NVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLD 234 (646)
Q Consensus 166 ~~~--------~~~l~~ad~~IlVvDa~~g~~~qt~~---~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~ 234 (646)
..+ ..+++.+|++|+|+|++++.+++... .|...+. ++|+++|+||+|+........ +++.+. +.
T Consensus 296 ~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-~~piIvV~NK~Dl~~~~~~~~-~~l~~~-~~- 371 (476)
T 3gee_A 296 EEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP-AAKFLTVANKLDRAANADALI-RAIADG-TG- 371 (476)
T ss_dssp ------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-TSEEEEEEECTTSCTTTHHHH-HHHHHH-HT-
T ss_pred hHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC-CCCEEEEEECcCCCCccchhH-HHHHhc-CC-
Confidence 544 33678899999999999998875332 3333332 799999999999987654332 344443 22
Q ss_pred cccccccccccccchhHHHHHHHHhCC-CCC
Q 043429 235 CTNAILCSAKEGIGINEILNAIVKRIP-PPS 264 (646)
Q Consensus 235 ~~~i~~vSAk~g~GV~eLl~~I~~~ip-~P~ 264 (646)
.+++++||++|.|+++++++|.+.++ .+.
T Consensus 372 -~~~i~vSAktg~GI~eL~~~i~~~~~~~~~ 401 (476)
T 3gee_A 372 -TEVIGISALNGDGIDTLKQHMGDLVKNLDK 401 (476)
T ss_dssp -SCEEECBTTTTBSHHHHHHHHTHHHHSSCC
T ss_pred -CceEEEEECCCCCHHHHHHHHHHHHhhccC
Confidence 46899999999999999999999886 543
No 155
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.77 E-value=2.5e-19 Score=172.60 Aligned_cols=162 Identities=16% Similarity=0.241 Sum_probs=107.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEe---cCCCeEEEEEeCCCCc
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVF---ENEPFCLNLIDTPGHV 162 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~---~~~~~~l~liDTPG~~ 162 (646)
.+|+|+|.+|+|||||+++|+....... .....|+........+.. ++..+.+++|||||++
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~---------------~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDL---------------GMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE 67 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC--------------------------CSEEEEEEEC---------CEEEEEEECSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccC---------------CCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH
Confidence 4899999999999999999976211110 001113322222222211 2346789999999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCc-cHhhHHHHHHHHH---cCCCeEEEEeccCCCCCCch-HHHHHHHHHh----CC
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGV-EAQTLANVYLALE---NNLEIIPVLNKIDLPGAEPS-RVAREIEEVI----GL 233 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~-~~qt~~~~~~~~~---~~~piIvViNKiDl~~~~~~-~~~~el~~~l----~~ 233 (646)
+|......+++.+|++++|+|.+++. ++..+..|...+. .+.|+++|+||+|+...... ....+..+.+ ++
T Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
T 2zej_A 68 EFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGF 147 (184)
T ss_dssp HHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTS
T ss_pred HHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCC
Confidence 98888888999999999999999874 5677777766543 37899999999998654321 1112222222 32
Q ss_pred C-ccccccccccccc-chhHHHHHHHHhCCC
Q 043429 234 D-CTNAILCSAKEGI-GINEILNAIVKRIPP 262 (646)
Q Consensus 234 ~-~~~i~~vSAk~g~-GV~eLl~~I~~~ip~ 262 (646)
+ ..+++++||++|. |+++|++.|.+.++.
T Consensus 148 ~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 148 PAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp CEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred cchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 2 0138999999996 999999999887654
No 156
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.77 E-value=3.6e-18 Score=190.45 Aligned_cols=154 Identities=20% Similarity=0.198 Sum_probs=120.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
...+|+|+|.+|+|||||+++|+..... . ...|++.....+.+ +++.++||||||+.+
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~-----------~-------~~~T~~~~~~~~~~----~~~~~~l~Dt~G~~~ 378 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSV-----------T-------TIPTVGFNVETVTY----KNVKFNVWDVGGQDK 378 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCC-----------C-------CCCCSSEEEEEEES----SSCEEEEEEECCCGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCC-----------C-------cCCccceeEEEEEe----CCEEEEEEECCCcHH
Confidence 3579999999999999999999873211 0 11245544444443 378999999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCCchHHHHHHHHHhCCC----
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLD---- 234 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~---- 234 (646)
|...+..+++.+|++|+|||++++.+++....|...+. .++|+++|+||+|+...... +++.+.++..
T Consensus 379 ~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~ 455 (497)
T 3lvq_E 379 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP---HEIQEKLGLTRIRD 455 (497)
T ss_dssp GSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCH---HHHHHHTTCTTCCS
T ss_pred HHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCH---HHHHHHhchhhhhc
Confidence 99999999999999999999999988888877766553 37999999999999765432 3444455433
Q ss_pred -cccccccccccccchhHHHHHHHHhCCC
Q 043429 235 -CTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 235 -~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
..+++++||++|.||++++++|.+.+..
T Consensus 456 ~~~~~~~~SA~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 456 RNWYVQPSCATSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHHCC-
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2358999999999999999999998743
No 157
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.76 E-value=3.8e-19 Score=195.29 Aligned_cols=154 Identities=18% Similarity=0.299 Sum_probs=103.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc---
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV--- 162 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~--- 162 (646)
++|+|+|++|+|||||+|+|++.... .++...|+|.+.......|. +..+++|||||+.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~--------------~v~~~~g~T~d~~~~~~~~~----~~~~~l~DT~G~~~~~ 65 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERIS--------------IVEDTPGVTRDRIYSSAEWL----NYDFNLIDTGGIDIGD 65 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-------------------------CEEEECTTC----SSCCEEEC--------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce--------------eecCCCCCccceEEEEEEEC----CceEEEEECCCCCCcc
Confidence 58999999999999999999753211 12345677776654444433 6789999999996
Q ss_pred -----cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCccc
Q 043429 163 -----DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTN 237 (646)
Q Consensus 163 -----df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~ 237 (646)
.+...+..+++.||++|+|+|++++.+..+...+......++|+++|+||+|+.....+ ..++. .+++ .+
T Consensus 66 ~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~--~~~~~-~lg~--~~ 140 (436)
T 2hjg_A 66 EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRAN--IYDFY-SLGF--GE 140 (436)
T ss_dssp -CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----C--CCSSG-GGSS--CC
T ss_pred hhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhh--HHHHH-HcCC--CC
Confidence 46666778999999999999999999887765555555678999999999998643210 01111 1233 36
Q ss_pred ccccccccccchhHHHHHHHHhCCC
Q 043429 238 AILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
++++||++|.|+++|++++.+.++.
T Consensus 141 ~~~iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 141 PYPISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp CEECBTTTTBTHHHHHHHHHHTGGG
T ss_pred eEEEeCcCCCChHHHHHHHHHhcCc
Confidence 8999999999999999999998874
No 158
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.76 E-value=8.7e-19 Score=180.40 Aligned_cols=153 Identities=18% Similarity=0.251 Sum_probs=110.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|++|+|||||+++|++... .+....|+|+......+ .. +..+++|||||+.+|
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~---------------~v~~~pg~tv~~~~~~~----~~-~~~l~l~DtpG~~~~ 62 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ---------------RVGNWPGVTVERKSGLV----KK-NKDLEIQDLPGIYSM 62 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC---------------CCCSSSCCCCSCEEEEC----TT-CTTEEEEECCCCSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC---------------cccCCCCCcEEEEEEEE----ec-CCeEEEEECCCcCcc
Confidence 46899999999999999999976211 11223467776543332 23 578999999999988
Q ss_pred h------hhHhhhhh--hccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCC-CchHHHHHHHHHhCCCc
Q 043429 165 S------YEVSRSLA--ACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGA-EPSRVAREIEEVIGLDC 235 (646)
Q Consensus 165 ~------~~~~~~l~--~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~-~~~~~~~el~~~l~~~~ 235 (646)
. .....++. .+|++++|+|+++.. .....+....+.++|+++|+||+|+... ......+++.+.++.
T Consensus 63 ~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e--~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~-- 138 (272)
T 3b1v_A 63 SPYSPEAKVARDYLLSQRADSILNVVDATNLE--RNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHLGV-- 138 (272)
T ss_dssp SCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHH--HHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTS--
T ss_pred CCCChHHHHHHHHHhcCCCCEEEEEecCCchH--hHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCC--
Confidence 6 33455665 599999999998742 2223333445579999999999997532 111234567777775
Q ss_pred ccccccccccccchhHHHHHHHHhCCC
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+++++||++|.|+++++++|.+.+..
T Consensus 139 -~vi~~SA~~g~gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 139 -PVVATSALKQTGVDQVVKKAAHTTTS 164 (272)
T ss_dssp -CEEECBTTTTBSHHHHHHHHHHSCTT
T ss_pred -CEEEEEccCCCCHHHHHHHHHHHHhh
Confidence 48999999999999999999987654
No 159
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.76 E-value=2.1e-18 Score=175.74 Aligned_cols=162 Identities=15% Similarity=0.117 Sum_probs=109.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
....+|+|+|++|+|||||+++|++....... ....++|.........+. +..++||||||+.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~~~----~~~i~iiDTpG~~ 82 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESK-------------LGSQTLTKTCSKSQGSWG----NREIVIIDTPDMF 82 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCC-------------TTSCCCCCSCEEEEEEET----TEEEEEEECCGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccC-------------CCCCceeeeeEEEEEEeC----CCEEEEEECcCCC
Confidence 34579999999999999999999874322210 011224555555555554 7889999999998
Q ss_pred cchhhH-----------hhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc-----CCCeEEEEe-ccCCCCCCchHH--
Q 043429 163 DFSYEV-----------SRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLN-KIDLPGAEPSRV-- 223 (646)
Q Consensus 163 df~~~~-----------~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~-----~~piIvViN-KiDl~~~~~~~~-- 223 (646)
++.... ..+++.+|++|+|+|++. .+.++...|....+. +.|.++|+| |+|+.+......
T Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~ 161 (260)
T 2xtp_A 83 SWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMH 161 (260)
T ss_dssp GSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHH
Confidence 864322 236778999999999986 555555554444443 568777777 999986544331
Q ss_pred ------HHHHHHHhCCCc--ccccccccccccchhHHHHHHHHhCCC
Q 043429 224 ------AREIEEVIGLDC--TNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 224 ------~~el~~~l~~~~--~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
..++.+.++... ...+++||++|.|+++++++|.+.++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 162 DSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 122334444221 112899999999999999999987753
No 160
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.76 E-value=2.7e-18 Score=180.19 Aligned_cols=159 Identities=18% Similarity=0.199 Sum_probs=116.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|.+|+|||||+++++..... .. ..+ |+.. .....+..++..+.+++|||||+.+|
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~-----------~~-----~~~-t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~ 216 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFP-----------GE-----YIP-TVFD-NYSANVMVDGKPVNLGLWDTAGLEDY 216 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCC-----------CS-----CCC-CSEE-EEEEEEEETTEEEEEEEEEECCCGGG
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCC-----------cc-----cCC-cccc-eeEEEEEECCEEEEEEEEeCCCchhh
Confidence 479999999999999999999863211 00 111 2211 11222334555678889999999999
Q ss_pred hhhHhhhhhhccceEEEEeCCCCccHhhHH-HHHHHHHc---CCCeEEEEeccCCCCCC--------------chHHHHH
Q 043429 165 SYEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLALEN---NLEIIPVLNKIDLPGAE--------------PSRVARE 226 (646)
Q Consensus 165 ~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~-~~~~~~~~---~~piIvViNKiDl~~~~--------------~~~~~~e 226 (646)
...+..+++.+|++++|+|++++.+++... .|...+.. ++|+++|+||+|+.... ..+...+
T Consensus 217 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 296 (332)
T 2wkq_A 217 DRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 296 (332)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred hHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHH
Confidence 999999999999999999999988887775 56554443 89999999999985431 1222334
Q ss_pred HHHHhCCCcccccccccccccchhHHHHHHHHhCCCC
Q 043429 227 IEEVIGLDCTNAILCSAKEGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 227 l~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P 263 (646)
+.+.++. .+++++||++|.|+++++++|.+.+..|
T Consensus 297 ~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 297 MAKEIGA--VKYLECSALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp HHHHTTC--SEEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred HHHHcCC--cEEEEecCCCCcCHHHHHHHHHHHHhcC
Confidence 4444443 2589999999999999999999876544
No 161
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.73 E-value=1.2e-17 Score=184.97 Aligned_cols=152 Identities=20% Similarity=0.289 Sum_probs=115.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc-cc
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV-DF 164 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~-df 164 (646)
.+|+|+|.+|+|||||+|+|++....+ +....|+|.+.....+.+. +..+.||||||+. ++
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~--------------vs~~~gTT~d~~~~~i~~~----g~~~~l~DTaG~~~~~ 305 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAI--------------VTDIPGTTRDVISEEIVIR----GILFRIVDTAGVRSET 305 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCC--------------CCCSSCCSSCSCCEEEEET----TEEEEEEESSCCCSSC
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCc--------------cCCCCCeeeeeEEEEEecC----CeEEEEEECCCccccc
Confidence 589999999999999999998843211 2334567777666555554 6889999999998 65
Q ss_pred hh--------hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcc
Q 043429 165 SY--------EVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCT 236 (646)
Q Consensus 165 ~~--------~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~ 236 (646)
.. ....++..+|++|+|+|++++.+.+....|... .++|+++|+||+|+..... .+++.+..+. ..
T Consensus 306 ~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~---~~~~~~~~~~-~~ 379 (482)
T 1xzp_A 306 NDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKIN---EEEIKNKLGT-DR 379 (482)
T ss_dssp CTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCC---HHHHHHHHTC-ST
T ss_pred hhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccccC---HHHHHHHhcC-CC
Confidence 42 245678899999999999998887776555332 5899999999999975422 2344444442 24
Q ss_pred cccccccccccchhHHHHHHHHhCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+++++||++|.|+++|+++|.+.+.
T Consensus 380 ~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 380 HMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp TEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6899999999999999999998764
No 162
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.73 E-value=2.7e-17 Score=160.39 Aligned_cols=158 Identities=24% Similarity=0.265 Sum_probs=114.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
...+|+|+|++|+|||||+++|++..... ....|+........+..++..+.+.+|||||+..
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~-----------------~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 66 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL-----------------ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC--------------------CCCSCEEEEEEEEETTEEEEEEEEECSSGGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCC-----------------CCCCccceeEEEEEEEECCEEEEEEEEECCCchh
Confidence 35799999999999999999998732111 1111222222222334455567889999999999
Q ss_pred chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCccc
Q 043429 164 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCTN 237 (646)
Q Consensus 164 f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~~ 237 (646)
+...+..++..+|++++|+|+++..+++....|...+. .+.|+++|+||+|+.... .......+....++ .
T Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~---~ 143 (199)
T 2f9l_A 67 YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNL---S 143 (199)
T ss_dssp TTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC---E
T ss_pred hhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCC---e
Confidence 88888888899999999999999888877766765433 368899999999986432 22333444444443 5
Q ss_pred ccccccccccchhHHHHHHHHhCC
Q 043429 238 AILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
++.+||+++.|+++++++|.+.+.
T Consensus 144 ~~d~Sal~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 144 FIETSALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 888999999999999999987663
No 163
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.72 E-value=4.7e-18 Score=187.66 Aligned_cols=155 Identities=18% Similarity=0.284 Sum_probs=107.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCC----
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPG---- 160 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG---- 160 (646)
.++|+|+|++|+|||||+|+|++.... .++...|+|.+.......+ .+..+++|||||
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~--------------~v~~~~g~t~~~~~~~~~~----~~~~~~liDT~G~~~~ 84 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERIS--------------IVEDTPGVTRDRIYSSAEW----LNYDFNLIDTGGIDIG 84 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-------------------------CEEEECTT----CSSCCEEECCCC----
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCc--------------ccCCCCCcceeEEEEEEEE----CCceEEEEECCCCCCc
Confidence 469999999999999999999762211 1233557776655444333 377899999999
Q ss_pred ----CccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcc
Q 043429 161 ----HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCT 236 (646)
Q Consensus 161 ----~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~ 236 (646)
+..+...+..+++.+|++|+|+|+.++.+..+...+....+.++|+++|+||+|+.... ....+.+.....
T Consensus 85 ~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~-----~~~~e~~~lg~~ 159 (456)
T 4dcu_A 85 DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR-----ANIYDFYSLGFG 159 (456)
T ss_dssp --CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC--------------CCSGGGSSS
T ss_pred chHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh-----hhHHHHHHcCCC
Confidence 55666777889999999999999999998888776666667799999999999986432 111122222223
Q ss_pred cccccccccccchhHHHHHHHHhCCC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+++++||++|.|+.+|++++.+.++.
T Consensus 160 ~~~~iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 160 EPYPISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp SEEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred ceEEeecccccchHHHHHHHHhhccc
Confidence 46899999999999999999988764
No 164
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.72 E-value=8.2e-18 Score=178.46 Aligned_cols=157 Identities=18% Similarity=0.204 Sum_probs=112.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc-
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD- 163 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d- 163 (646)
+.+|+++|.+|+|||||+++|+..... ......+|.......+.+. ....+.||||||+.+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~---------------i~~~~ftTl~p~~g~v~~~---~~~~~~l~DtPG~i~~ 219 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPK---------------IADYHFTTLVPNLGMVETD---DGRSFVMADLPGLIEG 219 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCE---------------ESSTTSSCCCCCEEEEECS---SSCEEEEEEHHHHHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCc---------------cccCCccccCceEEEEEeC---CCceEEEecCCCCccc
Confidence 568999999999999999999652111 1122334555554444332 236899999999754
Q ss_pred ------chhhHhhhhhhccceEEEEeCCC---CccHhhHHHHHHHHH------cCCCeEEEEeccCCCCCCchHHHHHHH
Q 043429 164 ------FSYEVSRSLAACEGALLVVDASQ---GVEAQTLANVYLALE------NNLEIIPVLNKIDLPGAEPSRVAREIE 228 (646)
Q Consensus 164 ------f~~~~~~~l~~ad~~IlVvDa~~---g~~~qt~~~~~~~~~------~~~piIvViNKiDl~~~~~~~~~~el~ 228 (646)
+.....+.+..+|++|+|+|+++ ....+....|...+. .++|+++|+||+|+... .+..+++.
T Consensus 220 a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~e~~~~l~ 297 (342)
T 1lnz_A 220 AHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AENLEAFK 297 (342)
T ss_dssp TTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HHHHHHHH
T ss_pred ccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--HHHHHHHH
Confidence 22334455666999999999987 566677777766554 37899999999998643 23445666
Q ss_pred HHhCCCcccccccccccccchhHHHHHHHHhCCC
Q 043429 229 EVIGLDCTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 229 ~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+.++.. .+++++||+++.|+++|+++|.+.+..
T Consensus 298 ~~l~~~-~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 298 EKLTDD-YPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp HHCCSC-CCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred HHhhcC-CCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 666522 468999999999999999999988754
No 165
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.71 E-value=9.7e-17 Score=155.70 Aligned_cols=158 Identities=24% Similarity=0.273 Sum_probs=115.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
+...+|+|+|++|+|||||+++|+...... ....|+........+..++..+.+++|||||+.
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~-----------------~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~ 89 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNL-----------------ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCC-----------------SCCCCCSEEEEEEEEEETTEEEEEEEEEECSCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCC-----------------CCCCccceEEEEEEEEECCEEEEEEEEECCCCc
Confidence 446799999999999999999998732111 111133322223334445556778899999999
Q ss_pred cchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH----cCCCeEEEEeccCCCCCC--chHHHHHHHHHhCCCcc
Q 043429 163 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPGAE--PSRVAREIEEVIGLDCT 236 (646)
Q Consensus 163 df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~--~~~~~~el~~~l~~~~~ 236 (646)
++...+..+++.++++++|+|.++..+++....|...+. .+.|+++|+||+|+.+.. ......++....++
T Consensus 90 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~--- 166 (191)
T 1oix_A 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGL--- 166 (191)
T ss_dssp SSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC---
T ss_pred chhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC---
Confidence 998888889999999999999998877777666654432 368899999999986422 23334445444443
Q ss_pred cccccccccccchhHHHHHHHHhC
Q 043429 237 NAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 237 ~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
.++.+||+++.|+++++++|.+.+
T Consensus 167 ~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 167 SFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHh
Confidence 588899999999999999998754
No 166
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.70 E-value=1.2e-16 Score=170.84 Aligned_cols=156 Identities=23% Similarity=0.292 Sum_probs=106.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
...+|+++|.+|+|||||+++|+.... ......+.|.......+.+. +..+.+|||||+.+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~---------------~~~~~~~~t~~~~~~~~~~~----~~~~~l~Dt~G~~~ 226 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP---------------EIASYPFTTRGINVGQFEDG----YFRYQIIDTPGLLD 226 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC---------------EEECCTTCSSCEEEEEEEET----TEEEEEEECTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---------------ccCCCCCeeeceeEEEEEec----CceEEEEeCCCccc
Confidence 567999999999999999999965321 11222344555444333332 67899999999976
Q ss_pred chh---------hHhhhhhhccceEEEEeCCCCc--cHhhHHHHHHHHHc---CCCeEEEEeccCCCCCCchHHHHHHHH
Q 043429 164 FSY---------EVSRSLAACEGALLVVDASQGV--EAQTLANVYLALEN---NLEIIPVLNKIDLPGAEPSRVAREIEE 229 (646)
Q Consensus 164 f~~---------~~~~~l~~ad~~IlVvDa~~g~--~~qt~~~~~~~~~~---~~piIvViNKiDl~~~~~~~~~~el~~ 229 (646)
+.. .+......+|++++|+|++++. +.+....|...+.. +.|+++|+||+|+......+...++..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~ 306 (357)
T 2e87_A 227 RPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVK 306 (357)
T ss_dssp SCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHH
Confidence 431 1122334589999999998765 56666666555443 899999999999865422111122222
Q ss_pred HhCCCcccccccccccccchhHHHHHHHHhCC
Q 043429 230 VIGLDCTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 230 ~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
..+ .+++++||++|+|+++++++|.+.+.
T Consensus 307 ~~~---~~~~~iSA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 307 EKG---LNPIKISALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp HTT---CCCEECBTTTTBTHHHHHHHHHHHHH
T ss_pred hcC---CCeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 223 36899999999999999999988763
No 167
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.70 E-value=1e-17 Score=184.62 Aligned_cols=154 Identities=21% Similarity=0.254 Sum_probs=102.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+|+|++|+|||||+|+|++....+ +....|+|.+.....+.+. +..++||||||+.++.
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~--------------v~~~~gtT~d~~~~~i~~~----g~~v~liDT~G~~~~~ 286 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAI--------------VTDLPGTTRDVVESQLVVG----GIPVQVLDTAGIRETS 286 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSC--------------CSCCTTCCHHHHHHEEEET----TEEEEECC--------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCccc--------------ccCCCCeeEEEEEEEEEEC----CEEEEEEECCccccch
Confidence 479999999999999999999853322 1223455555444344443 6889999999998765
Q ss_pred hhHh--------hhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCccc
Q 043429 166 YEVS--------RSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTN 237 (646)
Q Consensus 166 ~~~~--------~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~ 237 (646)
..+. .++..+|++++|+|++++.+.+....+. .+ .+.|+++|+||+|+....... .+.+ +. ...+
T Consensus 287 ~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~-~l-~~~piivV~NK~Dl~~~~~~~---~~~~-~~-~~~~ 359 (462)
T 3geh_A 287 DQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYE-QV-KHRPLILVMNKIDLVEKQLIT---SLEY-PE-NITQ 359 (462)
T ss_dssp ------------CCCCSCSEEEEEEETTTCSCHHHHHHHH-HH-TTSCEEEEEECTTSSCGGGST---TCCC-CT-TCCC
T ss_pred hHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHH-hc-cCCcEEEEEECCCCCcchhhH---HHHH-hc-cCCc
Confidence 4433 3577899999999999988877644333 33 347999999999997654322 1111 11 2346
Q ss_pred ccccccccccchhHHHHHHHHhCCCCC
Q 043429 238 AILCSAKEGIGINEILNAIVKRIPPPS 264 (646)
Q Consensus 238 i~~vSAk~g~GV~eLl~~I~~~ip~P~ 264 (646)
++++||++|.|+++++++|.+.+....
T Consensus 360 ~i~iSAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 360 IVHTAAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 899999999999999999999876543
No 168
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.69 E-value=7.5e-17 Score=168.74 Aligned_cols=156 Identities=14% Similarity=0.184 Sum_probs=108.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY 166 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~ 166 (646)
||+++|..|+|||||++++.... .. . .....+.|++.....+ +..++++||||||+++|..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~--~~-~-----------~~~~~~~Tig~~~~~v-----~~~v~LqIWDTAGQErf~~ 61 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNM--QP-L-----------DTLYLESTSNPSLEHF-----STLIDLAVMELPGQLNYFE 61 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCC--CS-G-----------GGTTCCCCCSCCCEEE-----CSSSCEEEEECCSCSSSCC
T ss_pred CEEEECCCCCCHHHHHHHHHcCC--CC-C-----------ccceecCeeeeeeEEE-----ccEEEEEEEECCCchhccc
Confidence 58999999999999998875421 00 0 0112345666655443 2358999999999999964
Q ss_pred ---hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHH------HcCCCeEEEEeccCCCCCCc-----hHHHHHHHHHhC
Q 043429 167 ---EVSRSLAACEGALLVVDASQGVEAQTLANVYLAL------ENNLEIIPVLNKIDLPGAEP-----SRVAREIEEVIG 232 (646)
Q Consensus 167 ---~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~------~~~~piIvViNKiDl~~~~~-----~~~~~el~~~l~ 232 (646)
.+..+++.++++|+|+|+++. .......|...+ ..++|+++|+||+|+...+. .++..+..+.+.
T Consensus 62 ~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la 140 (331)
T 3r7w_B 62 PSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELL 140 (331)
T ss_dssp CSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTS
T ss_pred hhhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHH
Confidence 467899999999999999987 445555553322 13789999999999975432 122222222232
Q ss_pred C-----CcccccccccccccchhHHHHHHHHhCCCC
Q 043429 233 L-----DCTNAILCSAKEGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 233 ~-----~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P 263 (646)
- ...+++++||++ .+|.+.|..|++.+.+-
T Consensus 141 ~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 141 ELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp SSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSSTT
T ss_pred hhcccccCceEEEeccCC-CcHHHHHHHHHHHHHhh
Confidence 1 134689999998 59999999999887543
No 169
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.69 E-value=5.7e-17 Score=166.85 Aligned_cols=167 Identities=19% Similarity=0.220 Sum_probs=94.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|++|+|||||+|+|+........ ..........|+........+..++..+.+++|||||+.++
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~---------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~ 78 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPE---------YPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 78 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC------------------------CCCEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccC---------CCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc
Confidence 469999999999999999998753211110 00000111234444444444444445579999999999653
Q ss_pred h-------hhH-------hhhhhh-------------ccceEEEEeCCC-CccHhhHHHHHHHHHcCCCeEEEEeccCCC
Q 043429 165 S-------YEV-------SRSLAA-------------CEGALLVVDASQ-GVEAQTLANVYLALENNLEIIPVLNKIDLP 216 (646)
Q Consensus 165 ~-------~~~-------~~~l~~-------------ad~~IlVvDa~~-g~~~qt~~~~~~~~~~~~piIvViNKiDl~ 216 (646)
. ..+ ..++.. +|++++++|.+. +....+...+..... ++|+++|+||+|+.
T Consensus 79 ~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 79 VDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTL 157 (274)
T ss_dssp SCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGS
T ss_pred ccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCC
Confidence 2 222 344444 678889887665 667666655444444 89999999999985
Q ss_pred CCC-chHHHHHHHHHhCCCcccccccccccccchhHHHHHHHHhCC
Q 043429 217 GAE-PSRVAREIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 217 ~~~-~~~~~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
... .....+++.+.+.....+++.+||++|.|+++++++|.+.+|
T Consensus 158 ~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 158 TPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 432 233334455544333345899999999999999999998764
No 170
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.68 E-value=1.6e-16 Score=161.09 Aligned_cols=159 Identities=18% Similarity=0.179 Sum_probs=105.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC---
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH--- 161 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~--- 161 (646)
-.+|+++|++|+|||||+|+|+........ ....|+|.........+. +..++||||||+
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~-------------~~~~~~T~~~~~~~~~~~----~~~i~liDTPG~~~~ 83 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSR-------------LGATSVTRACTTGSRRWD----KCHVEVVDTPDIFSS 83 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC----------------------CCSCEEEEEEET----TEEEEEEECCSCSST
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCcccc-------------CCCCCccccEEEEEEEEC----CcEEEEEECCCCCCC
Confidence 369999999999999999999874322210 012245555555555444 788999999998
Q ss_pred -----ccchhhHhhhh----hhccceEEEEeCCCCccHhhHHHHHHHHHc------CCCeEEEEeccCCCCCCchHHH--
Q 043429 162 -----VDFSYEVSRSL----AACEGALLVVDASQGVEAQTLANVYLALEN------NLEIIPVLNKIDLPGAEPSRVA-- 224 (646)
Q Consensus 162 -----~df~~~~~~~l----~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~------~~piIvViNKiDl~~~~~~~~~-- 224 (646)
.++..++.+++ +.+|++|+|+|++. ....+...+....+. +.|+++|+||+|+.+.+.++..
T Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~ 162 (247)
T 3lxw_A 84 QVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSN 162 (247)
T ss_dssp THHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhh
Confidence 45556666666 88999999999985 555554444444442 7899999999999876654333
Q ss_pred ------HHHHHHhCCCccccccccc---ccccchhHHHHHHHHhCCC
Q 043429 225 ------REIEEVIGLDCTNAILCSA---KEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 225 ------~el~~~l~~~~~~i~~vSA---k~g~GV~eLl~~I~~~ip~ 262 (646)
+++.+.++... .++..++ .++.|+++|++.|.+.++.
T Consensus 163 ~~~~~l~~l~~~~g~~~-~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 163 TENRALRELVAECGGRV-CAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp CCCHHHHHHHHHTTTCE-EECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHcCCeE-EEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 33444444321 1233333 3378999999999888754
No 171
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.67 E-value=6.3e-17 Score=182.13 Aligned_cols=161 Identities=17% Similarity=0.120 Sum_probs=106.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEE--------EEEecCCCeEE
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARM--------RYVFENEPFCL 153 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~--------~~~~~~~~~~l 153 (646)
.....||+++|.+|+|||||+++|+..... .....|+.....+. ....++..+.+
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~-----------------~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~ 100 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFD-----------------PKESQTHGLNVVTKQAPNIKGLENDDELKECLF 100 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC----------------------------CCCEEEEEGGGSGGGTTCSTTTTCEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCC-----------------CCCCCccceEEEEeccccccceeecCCCceEEE
Confidence 345579999999999999999999863210 01111222222211 11112346899
Q ss_pred EEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH---cCCCeEEEEeccCCCCCCchHHHHHHHHH
Q 043429 154 NLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NNLEIIPVLNKIDLPGAEPSRVAREIEEV 230 (646)
Q Consensus 154 ~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~---~~~piIvViNKiDl~~~~~~~~~~el~~~ 230 (646)
++|||||++.|......+++.+|++|+|+|+++. +....|...+. .+.|+++|+||+|+....... .+++.+.
T Consensus 101 ~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~-~~~~~~~ 176 (535)
T 3dpu_A 101 HFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIE-QKKINER 176 (535)
T ss_dssp EEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCC-HHHHHHH
T ss_pred EEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccC-HHHHHHH
Confidence 9999999999998888899999999999999875 34445544433 359999999999997643211 2334443
Q ss_pred hCCCcccccccccccccchhHHHHHHHHhCCCC
Q 043429 231 IGLDCTNAILCSAKEGIGINEILNAIVKRIPPP 263 (646)
Q Consensus 231 l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P 263 (646)
+.....+++++||++|.||++++++|.+.+...
T Consensus 177 ~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 177 FPAIENRFHRISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp CGGGTTCEEECCC-----CTTHHHHHHHHHTCT
T ss_pred HHhcCCceEEEecCcccCHHHHHHHHHHHHhcc
Confidence 332234699999999999999999999987654
No 172
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.67 E-value=2.5e-16 Score=168.54 Aligned_cols=161 Identities=19% Similarity=0.204 Sum_probs=105.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
.++.|+|+|++|+|||||+++|++... ..+...+.|.+.....+.+. +..+.+|||||+.+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~---------------~~~~~~~~T~d~~~~~i~~~----g~~v~l~DT~G~i~ 238 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ---------------KVDTKLFTTMSPKRYAIPIN----NRKIMLVDTVGFIR 238 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC--------------------------CCSCEEEEEET----TEEEEEEECCCBCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc---------------cccCCcccccCCEEEEEEEC----CEEEEEEeCCCchh
Confidence 355699999999999999999976321 12234456666655555554 57889999999743
Q ss_pred ---------chhhHhhhhhhccceEEEEeCCCCc--cHhhHHHHHHHHH----cCCCeEEEEeccCCCCCCchHHHHH--
Q 043429 164 ---------FSYEVSRSLAACEGALLVVDASQGV--EAQTLANVYLALE----NNLEIIPVLNKIDLPGAEPSRVARE-- 226 (646)
Q Consensus 164 ---------f~~~~~~~l~~ad~~IlVvDa~~g~--~~qt~~~~~~~~~----~~~piIvViNKiDl~~~~~~~~~~e-- 226 (646)
|.. +...+..+|++++|+|++++. .......|...+. .+.|+++|+||+|+.........+.
T Consensus 239 ~lp~~lve~f~~-tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~ 317 (364)
T 2qtf_A 239 GIPPQIVDAFFV-TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVE 317 (364)
T ss_dssp SCCGGGHHHHHH-HHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHH
T ss_pred cCCHHHHHHHHH-HHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHH
Confidence 211 233578899999999998876 3444444443332 4789999999999876543222222
Q ss_pred -HHHHhCCCcccccccccccccchhHHHHHHHHhCCCCC
Q 043429 227 -IEEVIGLDCTNAILCSAKEGIGINEILNAIVKRIPPPS 264 (646)
Q Consensus 227 -l~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~P~ 264 (646)
+...++....+++++||++|.|+++++++|.+.++.|.
T Consensus 318 ~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 318 KLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp HHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccC
Confidence 23334222235799999999999999999998775443
No 173
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.66 E-value=3.1e-16 Score=154.68 Aligned_cols=143 Identities=23% Similarity=0.283 Sum_probs=89.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
.+..+|+++|++|+|||||+++|+....... .......++... ....+++|||||+.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~------------~~~~~~~~~~~~-----------~~~~~~l~Dt~G~~ 66 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT------------VVSQEPLSAADY-----------DGSGVTLVDFPGHV 66 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB------------CCCSSCEEETTG-----------GGSSCEEEECCCCG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe------------eeecCceEEEEe-----------eCceEEEEECCCcH
Confidence 3457999999999999999999987321100 000111111111 36788999999999
Q ss_pred cchhhHhhhhhh----ccceEEEEeCC-CCccHhhHHHHHHHHH--------cCCCeEEEEeccCCCCCCc-hHHHHH--
Q 043429 163 DFSYEVSRSLAA----CEGALLVVDAS-QGVEAQTLANVYLALE--------NNLEIIPVLNKIDLPGAEP-SRVARE-- 226 (646)
Q Consensus 163 df~~~~~~~l~~----ad~~IlVvDa~-~g~~~qt~~~~~~~~~--------~~~piIvViNKiDl~~~~~-~~~~~e-- 226 (646)
++...+..+++. +|++|+|+|++ +..++.....|..... .++|+++|+||+|+..... ....+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~ 146 (218)
T 1nrj_B 67 KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALE 146 (218)
T ss_dssp GGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHH
Confidence 999888888887 99999999999 6666655555543332 4899999999999987654 222222
Q ss_pred --HHHHhCCCcccccccccccccc
Q 043429 227 --IEEVIGLDCTNAILCSAKEGIG 248 (646)
Q Consensus 227 --l~~~l~~~~~~i~~vSAk~g~G 248 (646)
+.........+++++||++|.+
T Consensus 147 ~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 147 SEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHhccccccccccccc
Confidence 2211111123589999999875
No 174
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=161.28 Aligned_cols=174 Identities=14% Similarity=0.135 Sum_probs=100.4
Q ss_pred CCceeEEEEcCC---------CCCHHHHHHHHHHhc-CCccccccccc-cccccccccccceeeeeeEEEEEEEecCCCe
Q 043429 83 SNIRNFSIIAHI---------DHGKSTLADKLLQMT-GTVQKREMKEQ-FLDNMDLERERGITIKLQAARMRYVFENEPF 151 (646)
Q Consensus 83 ~~ir~I~IiG~~---------~~GKSTLi~~Ll~~~-~~i~~~~~~~~-~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~ 151 (646)
....+|+++|.+ |+|||||+++|+... ........... -.+.....-...-....++.. ....++..+
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~ 95 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVS-RSLEDCVEC 95 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC----------
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeeccccccccccc-ccccCCcEE
Confidence 345799999999 999999999998621 11110000000 000000000000000000000 011234568
Q ss_pred EEEEEe-----------------------CCCCccchhhHhhhhh---------------------hccceEEEEeCCCC
Q 043429 152 CLNLID-----------------------TPGHVDFSYEVSRSLA---------------------ACEGALLVVDASQG 187 (646)
Q Consensus 152 ~l~liD-----------------------TPG~~df~~~~~~~l~---------------------~ad~~IlVvDa~~g 187 (646)
.++||| ++|+++|...+..+++ .||++|+|+|+++.
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 899999 4455555544455555 69999999999998
Q ss_pred --ccHhhHHHHHHHHH-----cCCCeEEEEeccCCCCCCchHHHHHHHHHh-CCCcccccccccccccchhHHHHHHHHh
Q 043429 188 --VEAQTLANVYLALE-----NNLEIIPVLNKIDLPGAEPSRVAREIEEVI-GLDCTNAILCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 188 --~~~qt~~~~~~~~~-----~~~piIvViNKiDl~~~~~~~~~~el~~~l-~~~~~~i~~vSAk~g~GV~eLl~~I~~~ 259 (646)
.+++.+..|...+. .++|+++|+||+|+...... ++..+.. .....+++++||++|.||+++|++|.+.
T Consensus 176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v---~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI---RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQL 252 (255)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH---HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH---HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 78888777765443 47999999999998543221 2333222 1123468999999999999999999876
Q ss_pred C
Q 043429 260 I 260 (646)
Q Consensus 260 i 260 (646)
+
T Consensus 253 l 253 (255)
T 3c5h_A 253 I 253 (255)
T ss_dssp H
T ss_pred h
Confidence 4
No 175
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.64 E-value=7.8e-16 Score=154.78 Aligned_cols=161 Identities=17% Similarity=0.155 Sum_probs=97.3
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCC
Q 043429 80 VPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTP 159 (646)
Q Consensus 80 ~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTP 159 (646)
.+....++|+++|++|+|||||+++|++...... .....++|.........+. +..++|||||
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~-------------~~~~~~~t~~~~~~~~~~~----~~~i~liDTp 86 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHS-------------GTAAKSITKKCEKRSSSWK----ETELVVVDTP 86 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC--------------------CCSCEEEEEEET----TEEEEEEECC
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCcc-------------CCCCCceeeeEEEEEEEeC----CceEEEEECC
Confidence 3445678999999999999999999987322110 0112255666555555554 6789999999
Q ss_pred CCccc-----------hhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHH-----HcCCCeEEEEeccCCCCCC-ch-
Q 043429 160 GHVDF-----------SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-----ENNLEIIPVLNKIDLPGAE-PS- 221 (646)
Q Consensus 160 G~~df-----------~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~-----~~~~piIvViNKiDl~~~~-~~- 221 (646)
|+.+. ...+..+++.+|++|+|+|++.... .....+.... ....|+++|+||+|+.... .+
T Consensus 87 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~ 165 (239)
T 3lxx_A 87 GIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTE-EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHD 165 (239)
T ss_dssp SCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSS-HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-------
T ss_pred CccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCH-HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHH
Confidence 97652 2233344556799999999985433 3322222222 2356999999999986432 22
Q ss_pred ------HHHHHHHHHhCCCcccccccccc-----cccchhHHHHHHHHhCC
Q 043429 222 ------RVAREIEEVIGLDCTNAILCSAK-----EGIGINEILNAIVKRIP 261 (646)
Q Consensus 222 ------~~~~el~~~l~~~~~~i~~vSAk-----~g~GV~eLl~~I~~~ip 261 (646)
+..+++.+.++.. ++.+++. ++.|+.+|++.+.+.+.
T Consensus 166 ~i~~~~~~l~~l~~~~~~~---~~~~~~~~~~~~~~~~v~~ll~~i~~~~~ 213 (239)
T 3lxx_A 166 YLREAPEDIQDLMDIFGDR---YCALNNKATGAEQEAQRAQLLGLIQRVVR 213 (239)
T ss_dssp -----CHHHHHHHHHHSSS---EEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhchHHHHHHHHHcCCE---EEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence 2345555556543 4444443 45799999999877664
No 176
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.62 E-value=7.4e-16 Score=159.70 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=76.9
Q ss_pred CeEEEEEeCCCCcc-------------chhhHhhhhhhccceE-EEEeCCCCccHhhHHHHH-HHHHcCCCeEEEEeccC
Q 043429 150 PFCLNLIDTPGHVD-------------FSYEVSRSLAACEGAL-LVVDASQGVEAQTLANVY-LALENNLEIIPVLNKID 214 (646)
Q Consensus 150 ~~~l~liDTPG~~d-------------f~~~~~~~l~~ad~~I-lVvDa~~g~~~qt~~~~~-~~~~~~~piIvViNKiD 214 (646)
...++||||||+.+ +...+..+++.++.++ +|+|++++...++...+. .....+.|+++|+||+|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~D 203 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 203 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccc
Confidence 47899999999752 4455667888888776 699999887777653333 33346899999999999
Q ss_pred CCCCCchHHHHHHHHHh-CC--CcccccccccccccchhHHHHHHHHh
Q 043429 215 LPGAEPSRVAREIEEVI-GL--DCTNAILCSAKEGIGINEILNAIVKR 259 (646)
Q Consensus 215 l~~~~~~~~~~el~~~l-~~--~~~~i~~vSAk~g~GV~eLl~~I~~~ 259 (646)
+...... ..+.+...+ .. ...+++++||++|.|+++++++|.+.
T Consensus 204 l~~~~~~-~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 204 LMDEGTD-ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp GSCTTCC-CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred cCCCCch-HHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 8754321 112222211 11 23478999999999999999998874
No 177
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.58 E-value=2.5e-15 Score=157.08 Aligned_cols=112 Identities=16% Similarity=0.151 Sum_probs=78.1
Q ss_pred CeEEEEEeCCCCcc-------------chhhHhhhhhhccceEEEEeC-CCCccHhhH-HHHHHHHHcCCCeEEEEeccC
Q 043429 150 PFCLNLIDTPGHVD-------------FSYEVSRSLAACEGALLVVDA-SQGVEAQTL-ANVYLALENNLEIIPVLNKID 214 (646)
Q Consensus 150 ~~~l~liDTPG~~d-------------f~~~~~~~l~~ad~~IlVvDa-~~g~~~qt~-~~~~~~~~~~~piIvViNKiD 214 (646)
...++||||||+.+ +...+..++..+|++++|+|+ +.+...+.. ..+......+.|+++|+||+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~D 209 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD 209 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcc
Confidence 57899999999864 445667789999999999997 455443443 333444446899999999999
Q ss_pred CCCCCchHHHHHHHHHh---CCCccccccccccc---ccchhHHHHHHHHhCCC
Q 043429 215 LPGAEPSRVAREIEEVI---GLDCTNAILCSAKE---GIGINEILNAIVKRIPP 262 (646)
Q Consensus 215 l~~~~~~~~~~el~~~l---~~~~~~i~~vSAk~---g~GV~eLl~~I~~~ip~ 262 (646)
+..... ...+.+...+ +....++..+||.+ +.|++++++.+.+.++.
T Consensus 210 l~~~~~-~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 210 LMDKGT-DAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp SSCSSC-CCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred cCCcch-HHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 875442 1223333211 13334677778888 89999999999888764
No 178
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.56 E-value=8.1e-15 Score=141.33 Aligned_cols=125 Identities=25% Similarity=0.358 Sum_probs=84.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
....+|+++|++|+|||||+++|+....... ......+++.. + ..+.+++|||||+.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~------------~~~~~~~~~~~-------~----~~~~~~l~Dt~G~~ 102 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT------------VVSQEPLSAAD-------Y----DGSGVTLVDFPGHV 102 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------------C-------C----CCTTCSEEEETTCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcc------------cccCCCceeee-------e----cCCeEEEEECCCCc
Confidence 3457999999999999999999987321100 00011111111 1 26788899999999
Q ss_pred cchhhHhhhhhh----ccceEEEEeCC-CCccHhhHHHHHHHHH--------cCCCeEEEEeccCCCCCC-chHHHHHHH
Q 043429 163 DFSYEVSRSLAA----CEGALLVVDAS-QGVEAQTLANVYLALE--------NNLEIIPVLNKIDLPGAE-PSRVAREIE 228 (646)
Q Consensus 163 df~~~~~~~l~~----ad~~IlVvDa~-~g~~~qt~~~~~~~~~--------~~~piIvViNKiDl~~~~-~~~~~~el~ 228 (646)
++...+..++.. +|++|+|+|++ +..++.....|..... .++|+++|+||+|+.... ..+..+.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~ 182 (193)
T 2ged_A 103 KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALE 182 (193)
T ss_dssp BSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHH
Confidence 998888887776 89999999999 5555555555543332 389999999999997654 444555554
Q ss_pred HH
Q 043429 229 EV 230 (646)
Q Consensus 229 ~~ 230 (646)
+.
T Consensus 183 ~~ 184 (193)
T 2ged_A 183 SE 184 (193)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 179
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.55 E-value=1.5e-14 Score=141.41 Aligned_cols=163 Identities=13% Similarity=0.180 Sum_probs=102.1
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCC
Q 043429 80 VPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTP 159 (646)
Q Consensus 80 ~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTP 159 (646)
++...-.+|+++|++|+|||||+++|++.... .......|.|..... +.+. + .+.+||||
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~-------------~~~~~~~G~~~~~~~--~~~~----~-~~~l~Dt~ 80 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSL-------------ARTSKTPGRTQLINL--FEVA----D-GKRLVDLP 80 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC--------------------------CCEEE--EEEE----T-TEEEEECC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCcc-------------ccccCCCccceeeEE--EEec----C-CEEEEECc
Confidence 44455578999999999999999998652100 011223454543322 2222 2 57899999
Q ss_pred CCccc----------hhhHhhhh---hhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchH-HHH
Q 043429 160 GHVDF----------SYEVSRSL---AACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSR-VAR 225 (646)
Q Consensus 160 G~~df----------~~~~~~~l---~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~-~~~ 225 (646)
|+.+. ...+..++ ..++++++++|++.+.+.............++|+++|+||+|+......+ ..+
T Consensus 81 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~ 160 (210)
T 1pui_A 81 GYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLN 160 (210)
T ss_dssp CCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHH
T ss_pred CCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHH
Confidence 98542 22233333 46899999999998877655444444456789999999999976432211 133
Q ss_pred HHHHHhCCC--cccccccccccccchhHHHHHHHHhCCC
Q 043429 226 EIEEVIGLD--CTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 226 el~~~l~~~--~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
.+...+.-. ...++++||+++.|+++++++|.+.++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 161 MVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp HHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 444443211 2357899999999999999999887643
No 180
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=154.82 Aligned_cols=170 Identities=20% Similarity=0.265 Sum_probs=84.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC---
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH--- 161 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~--- 161 (646)
..+|+|+|++|+|||||+++|+... ..... ....... ..+.|+........+...+....+++|||||+
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~-~~~~~-----~~~~~~~--~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~ 108 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTD-LYPER-----VIPGAAE--KIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDA 108 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCC-C----------------------CEEEEEEEEC----CEEEEEEEEC-------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCC-CCCCC-----cccCCCc--ccCCceeEEEEEEEeecCCcccceEEEEecccccc
Confidence 3689999999999999999986531 11100 0000011 11223333333333333333568999999999
Q ss_pred ----ccchhhHh-------hhhhhccc-------------eEEEEeC-CCCccHhhHHHHHHHHHcCCCeEEEEeccCCC
Q 043429 162 ----VDFSYEVS-------RSLAACEG-------------ALLVVDA-SQGVEAQTLANVYLALENNLEIIPVLNKIDLP 216 (646)
Q Consensus 162 ----~df~~~~~-------~~l~~ad~-------------~IlVvDa-~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~ 216 (646)
..|...+. .+++.+++ ++++++. ..+...... .|...+..++|+|+|+||+|+.
T Consensus 109 ~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~-~~~~~l~~~~piIlV~NK~Dl~ 187 (361)
T 2qag_A 109 INCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV-AFMKAIHNKVNIVPVIAKADTL 187 (361)
T ss_dssp -------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHH-HHHHHTCS-SCEEEEEECCSSS
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHH-HHHHHhccCCCEEEEEECCCCC
Confidence 44444444 66666544 5555654 334443333 4444555789999999999986
Q ss_pred CCCc-hHHHHHHHHHhCCCcccccccccccccc---hhHHHHHHHHhCCCC
Q 043429 217 GAEP-SRVAREIEEVIGLDCTNAILCSAKEGIG---INEILNAIVKRIPPP 263 (646)
Q Consensus 217 ~~~~-~~~~~el~~~l~~~~~~i~~vSAk~g~G---V~eLl~~I~~~ip~P 263 (646)
.... ....+++.+.......+++++||++|.| +.++++.|.+.+|.+
T Consensus 188 ~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~~e~~~~l~~~i~~~ip~~ 238 (361)
T 2qag_A 188 TLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFS 238 (361)
T ss_dssp CHHHHHHHHHHHHHHTTCC-CCSCCCC---------CHHHHHHHHHTCSCE
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCcchhHHHHHHHHHhcCCCC
Confidence 5321 1222355555544445799999999987 334455555555554
No 181
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.53 E-value=1.1e-14 Score=168.25 Aligned_cols=111 Identities=15% Similarity=0.210 Sum_probs=81.4
Q ss_pred eEEEEEeCCCCcc---chhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHH-HcCCCeEEEEeccCCCCCC---ch--
Q 043429 151 FCLNLIDTPGHVD---FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-ENNLEIIPVLNKIDLPGAE---PS-- 221 (646)
Q Consensus 151 ~~l~liDTPG~~d---f~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~-~~~~piIvViNKiDl~~~~---~~-- 221 (646)
..++||||||+.+ ....+..+++.+|++|+|+|++++.+..+...|...+ ..+.|+++|+||+|+.... .+
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~ 253 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDV 253 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCH
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccccccChhhH
Confidence 4689999999876 3455667899999999999999998888877775443 3588999999999985432 11
Q ss_pred ----H----HHHHHHHHh----C-----CCcccccccccc--------------cccchhHHHHHHHHhCC
Q 043429 222 ----R----VAREIEEVI----G-----LDCTNAILCSAK--------------EGIGINEILNAIVKRIP 261 (646)
Q Consensus 222 ----~----~~~el~~~l----~-----~~~~~i~~vSAk--------------~g~GV~eLl~~I~~~ip 261 (646)
. +.+.+...+ + ....+++++||+ +|.|+++++++|.+.+.
T Consensus 254 e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 254 EELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHH
Confidence 1 111111222 2 223468999999 99999999999988664
No 182
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.52 E-value=4.4e-15 Score=160.63 Aligned_cols=158 Identities=15% Similarity=0.131 Sum_probs=91.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEE-------------------ec
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYV-------------------FE 147 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~-------------------~~ 147 (646)
+|+|+|.+|+|||||+|+|++.. .. ....+++|+........+. .+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~--------------~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~ 66 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VE--------------IANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRN 66 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-----------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEET
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-Cc--------------ccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccC
Confidence 79999999999999999998632 11 1122334444333322211 01
Q ss_pred C-CCeEEEEEeCCCCccch-------hhHhhhhhhccceEEEEeCCCCc-----------cHhhHH--------------
Q 043429 148 N-EPFCLNLIDTPGHVDFS-------YEVSRSLAACEGALLVVDASQGV-----------EAQTLA-------------- 194 (646)
Q Consensus 148 ~-~~~~l~liDTPG~~df~-------~~~~~~l~~ad~~IlVvDa~~g~-----------~~qt~~-------------- 194 (646)
+ ....++||||||+.+.. .....+++.+|++++|+|++++. ...++.
T Consensus 67 ~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l 146 (397)
T 1wxq_A 67 GLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGIL 146 (397)
T ss_dssp TEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 1 13679999999987532 12224678999999999998861 111100
Q ss_pred ----------------------------------------------------------HH-HHHHHcCCCeEEEEeccCC
Q 043429 195 ----------------------------------------------------------NV-YLALENNLEIIPVLNKIDL 215 (646)
Q Consensus 195 ----------------------------------------------------------~~-~~~~~~~~piIvViNKiDl 215 (646)
.+ .......+|+++|+||+|+
T Consensus 147 ~~~~~~~~k~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~ 226 (397)
T 1wxq_A 147 SKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADA 226 (397)
T ss_dssp HTTTHHHHSTTTSSCCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCGGGCCHHHHHHHHHHHHHHHSCEEEEEECGGG
T ss_pred hhhHHHHHHHHhhcCccHHHHHHHHhcccCCCHHHHHHHHHHhccCCccccCCHHHHHHHHHhhhccCCCEEEEEeCccc
Confidence 00 0111235999999999998
Q ss_pred CCCCchHHHHHHHHHhCCCcccccccccccccchhHHHH-HHHHhCCC
Q 043429 216 PGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGINEILN-AIVKRIPP 262 (646)
Q Consensus 216 ~~~~~~~~~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~-~I~~~ip~ 262 (646)
. . ....+++.+.+.....+++++||+.+.|+.++++ .+++++|.
T Consensus 227 ~-~--~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~~~l~~~~p~ 271 (397)
T 1wxq_A 227 A-S--DEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPG 271 (397)
T ss_dssp S-C--HHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSSSCCCCSCC-
T ss_pred c-c--hHHHHHHHHHHhhcCCcEEEEeccchhhHHHHHhhhhhhhcCC
Confidence 6 2 2334555554421124699999999999999887 77777654
No 183
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.49 E-value=8e-14 Score=142.30 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=78.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|++|+|||||+++|++..... .....+.|.......+.+. +..++||||||+.+|
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~--------------~~~~~~~t~~~~~~~~~~~----~~~l~liDTpG~~~~ 97 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVR--------------VSPFQAEGLRPVMVSRTMG----GFTINIIDTPGLVEA 97 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSC--------------CCSSCC-CCCCEEEEEEET----TEEEEEEECCCSEET
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcc--------------cCCCCCcceeeEEEEEEEC----CeeEEEEECCCCCCc
Confidence 4699999999999999999998743211 1223455666555555544 789999999999998
Q ss_pred hhhHhhhhh---------hccceEEEEeCCCCccHhhHHHHHHHHH----c--CCCeEEEEeccCCCC
Q 043429 165 SYEVSRSLA---------ACEGALLVVDASQGVEAQTLANVYLALE----N--NLEIIPVLNKIDLPG 217 (646)
Q Consensus 165 ~~~~~~~l~---------~ad~~IlVvDa~~g~~~qt~~~~~~~~~----~--~~piIvViNKiDl~~ 217 (646)
......+++ .+|++++|+|++..........|...+. . ..|+++|+||+|+..
T Consensus 98 ~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 98 GYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred ccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 765444443 7899999998875432222223332222 1 248999999999853
No 184
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.48 E-value=2e-14 Score=153.49 Aligned_cols=107 Identities=23% Similarity=0.183 Sum_probs=76.3
Q ss_pred CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC-chHHHHHH
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE-PSRVAREI 227 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~-~~~~~~el 227 (646)
.++.+.||||||... .....+..+|++++|+|+..+...+.+... ..++|.++|+||+|+.+.. .....+++
T Consensus 170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~----~~~~p~ivVlNK~Dl~~~~~~~~~~~~l 242 (355)
T 3p32_A 170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG----VLELADIVVVNKADGEHHKEARLAAREL 242 (355)
T ss_dssp TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT----SGGGCSEEEEECCCGGGHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh----HhhcCCEEEEECCCCcChhHHHHHHHHH
Confidence 368899999999654 233456889999999999887766544311 1346999999999986432 23334455
Q ss_pred HHHh---CC----CcccccccccccccchhHHHHHHHHhCCC
Q 043429 228 EEVI---GL----DCTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 228 ~~~l---~~----~~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
.+.+ +. ...+++++||++|.|+++|+++|.+.++.
T Consensus 243 ~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 243 SAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5443 21 12469999999999999999999987643
No 185
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.47 E-value=1e-13 Score=150.46 Aligned_cols=157 Identities=19% Similarity=0.232 Sum_probs=104.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
....|+|+|++|+|||||+++|+..... .......|.......+.+. ....+.+|||||+.+
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~~~~---------------i~~~~ftTl~p~~G~V~~~---~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRAHPK---------------IAPYPFTTLSPNLGVVEVS---EEERFTLADIPGIIE 217 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSCCE---------------ECCCTTCSSCCEEEEEECS---SSCEEEEEECCCCCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCcc---------------ccCcccceecceeeEEEec---CcceEEEEecccccc
Confidence 3457999999999999999999653211 1111223444333333322 136789999999854
Q ss_pred ch-------hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH------cCCCeEEEEeccCCCCCCchHHHHHHHHH
Q 043429 164 FS-------YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE------NNLEIIPVLNKIDLPGAEPSRVAREIEEV 230 (646)
Q Consensus 164 f~-------~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~------~~~piIvViNKiDl~~~~~~~~~~el~~~ 230 (646)
.. ....+.+..++.+++++|++ ......+..|...+. .+.|.++|+||+|+... +..+++.+.
T Consensus 218 ~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~ 293 (416)
T 1udx_A 218 GASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADA 293 (416)
T ss_dssp CGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHH
Confidence 21 22334456799999999998 444445544443322 36899999999998754 334455444
Q ss_pred hCCCcccccccccccccchhHHHHHHHHhCCC
Q 043429 231 IGLDCTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 231 l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+.....+++.+||+++.|+++|+++|.+.+..
T Consensus 294 l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 294 LAREGLAVLPVSALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp HHTTTSCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHhcCCeEEEEECCCccCHHHHHHHHHHHHHh
Confidence 43223468999999999999999999987743
No 186
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.45 E-value=3.3e-14 Score=150.90 Aligned_cols=105 Identities=20% Similarity=0.177 Sum_probs=72.2
Q ss_pred CeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCC-CchHHHHHHH
Q 043429 150 PFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGA-EPSRVAREIE 228 (646)
Q Consensus 150 ~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~-~~~~~~~el~ 228 (646)
++.++||||||+.++... ....+|++++|+|++.+...+.+.. ...++|.++|+||+|+.+. +.....+++.
T Consensus 148 ~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~ 220 (341)
T 2p67_A 148 GYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDDGDNHTNVAIARHMYE 220 (341)
T ss_dssp TCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCCCCChHHHHHHHHHHH
Confidence 678999999999876544 4688999999999987755443322 1125789999999998754 2333334554
Q ss_pred HHhCC-C------cccccccccccccchhHHHHHHHHhCC
Q 043429 229 EVIGL-D------CTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 229 ~~l~~-~------~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
+.++. . ..+++++||++|.|+++|+++|.+.++
T Consensus 221 ~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 221 SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 43221 1 246899999999999999999988653
No 187
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.44 E-value=7.9e-14 Score=137.71 Aligned_cols=169 Identities=17% Similarity=0.188 Sum_probs=99.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccc-ccccc---ccccccccccceeee-eeEEEEEEEe----------c
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE-MKEQF---LDNMDLERERGITIK-LQAARMRYVF----------E 147 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~-~~~~~---~d~~~~e~e~giTi~-~~~~~~~~~~----------~ 147 (646)
.++++|+++|++|+|||||+++|+.......+.. ..... .|....+ ..|+++. ...... +.. .
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 105 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVR-RFGIKAEAISTGKE-CHLDAHMIYHRLKK 105 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHH-TTTCEEEECCCTTC-SSCCHHHHHTTGGG
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHH-hCCCcEEEecCCce-eecccHHHHHHHHh
Confidence 3568999999999999999999998532211100 00000 0111110 1122210 000000 000 1
Q ss_pred CCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCC---CCchHHH
Q 043429 148 NEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPG---AEPSRVA 224 (646)
Q Consensus 148 ~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~---~~~~~~~ 224 (646)
..++.+.+|||+|+.+.... +....+.+++|+|++.+... .|......+.|+++|+||+|+.. .+.++..
T Consensus 106 ~~~~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~ 178 (221)
T 2wsm_A 106 FSDCDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALAEAVGADVEKMK 178 (221)
T ss_dssp GTTCSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred cCCCCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCCcchhhHHHHHH
Confidence 13568899999996221111 11246789999999987532 22223335789999999999854 2344444
Q ss_pred HHHHHHhCCCcccccccccccccchhHHHHHHHHhCCC
Q 043429 225 REIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 225 ~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+.+.+. + +..+++++||++|.|+++++++|.+.+..
T Consensus 179 ~~~~~~-~-~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 179 ADAKLI-N-PRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHH-C-TTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHh-C-CCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 444443 2 23478999999999999999999887644
No 188
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.43 E-value=1.1e-13 Score=147.68 Aligned_cols=108 Identities=18% Similarity=0.150 Sum_probs=70.5
Q ss_pred CeEEEEEeCCCCcc-------------chhhHhhhhhhcc-ceEEEEeCCCCccHhhHH-HHHHHHHcCCCeEEEEeccC
Q 043429 150 PFCLNLIDTPGHVD-------------FSYEVSRSLAACE-GALLVVDASQGVEAQTLA-NVYLALENNLEIIPVLNKID 214 (646)
Q Consensus 150 ~~~l~liDTPG~~d-------------f~~~~~~~l~~ad-~~IlVvDa~~g~~~qt~~-~~~~~~~~~~piIvViNKiD 214 (646)
...++||||||..+ +...+..++..++ ++++|+|++.+...+... .+......+.|+++|+||+|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~D 208 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLD 208 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGG
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEecccc
Confidence 47899999999743 3344556665554 555577777766555543 33333346899999999999
Q ss_pred CCCCCchHHHHHHHHH-h--CCCcccccccccccccchhHHHHHHHH
Q 043429 215 LPGAEPSRVAREIEEV-I--GLDCTNAILCSAKEGIGINEILNAIVK 258 (646)
Q Consensus 215 l~~~~~~~~~~el~~~-l--~~~~~~i~~vSAk~g~GV~eLl~~I~~ 258 (646)
+.+.... ..+.+... + .....+++++||++|.|++++++++.+
T Consensus 209 l~~~~~~-~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 209 LMDEGTD-ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp GSCTTCC-CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ccCcchh-HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 8754321 11112111 1 112246899999999999999999976
No 189
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.42 E-value=9.9e-13 Score=134.75 Aligned_cols=116 Identities=15% Similarity=0.089 Sum_probs=74.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+|+++|++|+|||||+++|++..... .....+.|.......... .+..+++|||||+.++
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~--------------~~~~~~~t~~~~~~~~~~----~~~~l~iiDTpG~~~~ 100 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVS--------------ISPFQSEGPRPVMVSRSR----AGFTLNIIDTPGLIEG 100 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSC--------------CCSSSCCCSSCEEEEEEE----TTEEEEEEECCCSEET
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCccc--------------ccCCCCcceeeEEEEEee----CCeEEEEEECCCCCCC
Confidence 4799999999999999999998732211 112234444443333333 3788999999999887
Q ss_pred hhhH---h----hh--hhhccceEEEEeCCCC-ccHhhHHHHHHHHHc-C----CCeEEEEeccCCCCC
Q 043429 165 SYEV---S----RS--LAACEGALLVVDASQG-VEAQTLANVYLALEN-N----LEIIPVLNKIDLPGA 218 (646)
Q Consensus 165 ~~~~---~----~~--l~~ad~~IlVvDa~~g-~~~qt~~~~~~~~~~-~----~piIvViNKiDl~~~ 218 (646)
.... . ++ .+.+|++|+|+|++.. ........+...... + .|+++|+||+|+...
T Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 101 GYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred ccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 5321 1 12 2368999999988653 332333322222221 2 699999999998643
No 190
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.35 E-value=1.2e-12 Score=139.77 Aligned_cols=105 Identities=17% Similarity=0.077 Sum_probs=68.5
Q ss_pred CeEEEEEeCCCCccc-------------hhhHhhhhhhccceEEEEeCCCCccH-hh-HHHHHHHHHcCCCeEEEEeccC
Q 043429 150 PFCLNLIDTPGHVDF-------------SYEVSRSLAACEGALLVVDASQGVEA-QT-LANVYLALENNLEIIPVLNKID 214 (646)
Q Consensus 150 ~~~l~liDTPG~~df-------------~~~~~~~l~~ad~~IlVvDa~~g~~~-qt-~~~~~~~~~~~~piIvViNKiD 214 (646)
...++||||||+.++ ...+..++..+|++|+|+|+++.... +. ...+......+.|+++|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 567999999999887 55667789999999999987653322 22 2222222235789999999999
Q ss_pred CCCCCchHHHHHHHHHhCCCcccccccccccccchhHHHHH
Q 043429 215 LPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGINEILNA 255 (646)
Q Consensus 215 l~~~~~~~~~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~ 255 (646)
+...... ..+.+.........+++++|++++.|+++.+..
T Consensus 215 l~~~~~~-~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 215 LMDKGTD-AVEILEGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp GCCTTCC-SHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred cCCCccc-HHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence 8654321 112222111111235899999999998875544
No 191
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.35 E-value=1.7e-12 Score=135.42 Aligned_cols=166 Identities=20% Similarity=0.248 Sum_probs=79.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC----
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH---- 161 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~---- 161 (646)
.+|+|+|++|+|||||+++|+...- ....+ ...+..... .|+......+.....+....+++|||||+
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~-~~~~g---i~~~g~~~~----~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~ 90 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDL-YPERV---ISGAAEKIE----RTVQIEASTVEIEERGVKLRLTVVDTPGYGDAI 90 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC--------------------------------CEEEEC---CCEEEEEEEEC------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCc-cCCCC---cccCCcccC----CcceEeeEEEEecCCCcccCcchhhhhhhhhhc
Confidence 5889999999999999999875211 11000 000000000 01111111122222334578999999998
Q ss_pred ---ccchhhHh-------hhhhhccc-------------eEEEEeCCC-CccHhhHHHHHHHHHcCCCeEEEEeccCCCC
Q 043429 162 ---VDFSYEVS-------RSLAACEG-------------ALLVVDASQ-GVEAQTLANVYLALENNLEIIPVLNKIDLPG 217 (646)
Q Consensus 162 ---~df~~~~~-------~~l~~ad~-------------~IlVvDa~~-g~~~qt~~~~~~~~~~~~piIvViNKiDl~~ 217 (646)
+.+...+. .+++.+.+ ++++++.+. +...... .+...+..+.++++|+||+|+..
T Consensus 91 ~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~-~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 91 NCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV-AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH-HHHHHHTTTSCEEEEECCGGGSC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH-HHHHHHHhcCCEEEEEEeCCCCC
Confidence 44444443 45554433 555555544 4666554 23333345689999999999865
Q ss_pred CCc-hHHHHHHHHHhCCCcccccccccccccchhHHHHHHHHhCC
Q 043429 218 AEP-SRVAREIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 218 ~~~-~~~~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
... ....+++.+.......+++++||++| |++++|+.+.+.+.
T Consensus 170 ~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 170 LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence 321 11122333222111235899999999 99999999988764
No 192
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.33 E-value=2.1e-12 Score=137.38 Aligned_cols=106 Identities=19% Similarity=0.134 Sum_probs=66.6
Q ss_pred CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC-chHHHHHH
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE-PSRVAREI 227 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~-~~~~~~el 227 (646)
.++.+.||||||..... ......+|++++|+|++.+...+.... .-.+.|.++|+||+|+.... ......++
T Consensus 165 ~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~~----~il~~~~ivVlNK~Dl~~~~~~~~~~~~l 237 (349)
T 2www_A 165 AGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIKR----GIIEMADLVAVTKSDGDLIVPARRIQAEY 237 (349)
T ss_dssp TTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGGGHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhHH----HHHhcCCEEEEeeecCCCchhHHHHHHHH
Confidence 36788999999975322 334678999999999988754332221 11367899999999985321 11223344
Q ss_pred HHHhCC-------CcccccccccccccchhHHHHHHHHhCC
Q 043429 228 EEVIGL-------DCTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 228 ~~~l~~-------~~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
...+.. ...+++++||++|.|+++|+++|.+.++
T Consensus 238 ~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 238 VSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 433321 1236899999999999999999988653
No 193
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.33 E-value=1.5e-12 Score=146.44 Aligned_cols=213 Identities=17% Similarity=0.125 Sum_probs=113.8
Q ss_pred eEEEEEeCCCCcc-----------chhhHhhhhhhccceEEEEeCCC-CccHhhHHHHHHHHHcCCCeEEEEeccCCCCC
Q 043429 151 FCLNLIDTPGHVD-----------FSYEVSRSLAACEGALLVVDASQ-GVEAQTLANVYLALENNLEIIPVLNKIDLPGA 218 (646)
Q Consensus 151 ~~l~liDTPG~~d-----------f~~~~~~~l~~ad~~IlVvDa~~-g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~ 218 (646)
..++||||||+.+ |...+..++..+|++|+|+|+++ +...++...+......+.|+++|+||+|+...
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVET 233 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCH
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCH
Confidence 3689999999986 56677788999999999999988 45555555544444567899999999998643
Q ss_pred C-chHHHHHHH----HHhCCCccc-cccccccc-----ccc-------hhHHHHHHHHhCCCCCCCC--CCCc-eE---E
Q 043429 219 E-PSRVAREIE----EVIGLDCTN-AILCSAKE-----GIG-------INEILNAIVKRIPPPSNTA--GCPF-RA---L 274 (646)
Q Consensus 219 ~-~~~~~~el~----~~l~~~~~~-i~~vSAk~-----g~G-------V~eLl~~I~~~ip~P~~~~--~~pl-~~---~ 274 (646)
. ..+...++. ..++++... +...+... ..+ ++.+|..+ +.+|.-.... +.-. ++ .
T Consensus 234 ~el~~~~~~l~~s~~~i~~vs~l~~~~~~~~~~~~~~~~~~~~~~~~E~e~l~~~l-~elP~~~~v~~i~~~~~~~~~~~ 312 (550)
T 2qpt_A 234 QQLMRVYGALMWALGKVVGTPEVLRVYIGSFWSQPLLVPDNRRLFELEEQDLFRDI-QGLPRHAALRKLNDLVKRARLVR 312 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSCCCEEESCCSSSCCSSCTTHHHHHHHHHHHHHHH-HTTGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchhheeechHhhhhccccCCCCcccCCCCHHHHHHHHHHHHHHh-hhccHHHHHHHHHHHhccCCeEE
Confidence 2 222222222 222222110 00000000 011 12344442 3333211000 0000 00 0
Q ss_pred EEEEEeecc-ceEEecCC--CceEEccceeeEEEeecccccccccCCeeeec---CccccCCCCCcccCCceEEeeeeeC
Q 043429 275 IFDRIIMLM-KLECYPPI--KCKWKNFKQVGYLSASIRSVADARVGDTITHF---NRKADNLLPGYEEATPMVFCGLFPV 348 (646)
Q Consensus 275 vf~~~~d~~-~~i~~~~~--~~~~~vaG~Vg~i~~~i~~~~~~~~GDtl~~~---~~~~~~~l~~~~~~~p~v~~~i~p~ 348 (646)
|.-..+... .+.-++-+ |+..+..-+++.+...++....+..||+.... ......++..|+..+|.++.++++.
T Consensus 313 I~a~I~v~~~sqk~i~iGk~g~~~~li~~l~~~~~~i~~~~~~~~~d~p~~~~~~~~~~~~~~~~f~~l~~~~~~~l~~~ 392 (550)
T 2qpt_A 313 VHAYIISYLKKEMPTVFGKENKKKQLILKLPVIFAKIQLEHHISPGDFPDCQKMQELLMAHDFTKFHSLKPKLLEALDDM 392 (550)
T ss_dssp HHHHHHHHHHHHSCSSSCHHHHHHHHHHTHHHHHHHHHHTTCCCTTTCCCHHHHHHHHHHSCGGGSCCCCHHHHHHHHHH
T ss_pred EEEEEEEeecccceeEECCchHHHHHHHhHHHHHHHHHHHhCCCccccCCHHHHHhhhhhCChhhccccCHHHHHHHHhh
Confidence 000000000 00000111 11111111344444556667788999987543 1122235778888889999999999
Q ss_pred CCCCHHHHHHHHHHHh
Q 043429 349 DADQFPELRDALEKLQ 364 (646)
Q Consensus 349 ~~~d~~~L~~aL~kL~ 364 (646)
-..|+++|..+|.+-.
T Consensus 393 ~~~d~~~l~~~~~~~~ 408 (550)
T 2qpt_A 393 LAQDIAKLMPLLRQEE 408 (550)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHhccccc
Confidence 9999999999998753
No 194
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.30 E-value=5.4e-12 Score=145.37 Aligned_cols=170 Identities=16% Similarity=0.197 Sum_probs=104.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccc------------------------ccccccccc------------
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMK------------------------EQFLDNMDL------------ 127 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~------------------------~~~~d~~~~------------ 127 (646)
..++|+|+|..++|||||+|+|++........+.. ..+.+..+.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 45799999999999999999998843210000000 000000000
Q ss_pred ccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccc-------------hhhHhhhh-hhccceEEEEeCCCCccHhhH
Q 043429 128 ERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDF-------------SYEVSRSL-AACEGALLVVDASQGVEAQTL 193 (646)
Q Consensus 128 e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df-------------~~~~~~~l-~~ad~~IlVvDa~~g~~~qt~ 193 (646)
....|++- ....+..... ....+.|+||||...- ...+..++ ..+|.+++|+|++.+...++.
T Consensus 130 g~~~~is~--~~i~l~I~~P-~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~ 206 (772)
T 3zvr_A 130 GTNKGISP--VPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 206 (772)
T ss_dssp CSTTCCCS--CCEEEEEEET-TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH
T ss_pred CCCCcccc--cceEEEEecC-CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH
Confidence 00122222 2233333222 2457899999997651 12334444 468999999999998776665
Q ss_pred -HHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHH--Hh--CCCcccccccccccccchhHHHHHHHH
Q 043429 194 -ANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEE--VI--GLDCTNAILCSAKEGIGINEILNAIVK 258 (646)
Q Consensus 194 -~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~--~l--~~~~~~i~~vSAk~g~GV~eLl~~I~~ 258 (646)
..+......+.|+++|+||+|+....... ..+.. .+ .....+++++||++|.|+++|+++|.+
T Consensus 207 l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~--~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 207 LKIAKEVDPQGQRTIGVITKLDLMDEGTDA--RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHHHHCTTCSSEEEEEECTTSSCTTCCS--HHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEeCcccCCcchhh--HHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 34444445689999999999987543211 11211 11 123347899999999999999999986
No 195
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.30 E-value=7.1e-12 Score=131.59 Aligned_cols=127 Identities=15% Similarity=0.157 Sum_probs=89.6
Q ss_pred cceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCC----------CCccHhhHHHHHHHH
Q 043429 131 RGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDAS----------QGVEAQTLANVYLAL 200 (646)
Q Consensus 131 ~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~----------~g~~~qt~~~~~~~~ 200 (646)
+..|++.....+.+. ++.+++|||+|++.|...|..+++.++++|+|+|.+ +....+....|...+
T Consensus 151 r~~TiGi~~~~~~~~----~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i 226 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQ----SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTI 226 (327)
T ss_dssp CCCCCSEEEEEEEET----TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHH
T ss_pred cCceeeEEEEEEEee----ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHH
Confidence 445666665555544 799999999999999999999999999999999765 333333333343333
Q ss_pred H-----cCCCeEEEEeccCCCC-------------------CCchHHHHHHHHHh-CC-----Ccccccccccccccchh
Q 043429 201 E-----NNLEIIPVLNKIDLPG-------------------AEPSRVAREIEEVI-GL-----DCTNAILCSAKEGIGIN 250 (646)
Q Consensus 201 ~-----~~~piIvViNKiDl~~-------------------~~~~~~~~el~~~l-~~-----~~~~i~~vSAk~g~GV~ 250 (646)
. .++|+++|+||+|+.. .+.++..+-+.+.+ .. ....++++||+++.||+
T Consensus 227 ~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~ 306 (327)
T 3ohm_A 227 ITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIR 306 (327)
T ss_dssp HTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHH
T ss_pred hhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHH
Confidence 2 3689999999999742 12333333343333 11 11246889999999999
Q ss_pred HHHHHHHHhCC
Q 043429 251 EILNAIVKRIP 261 (646)
Q Consensus 251 eLl~~I~~~ip 261 (646)
++|+.+.+.+.
T Consensus 307 ~vF~~v~~~Il 317 (327)
T 3ohm_A 307 FVFAAVKDTIL 317 (327)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 196
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.25 E-value=8.2e-12 Score=131.63 Aligned_cols=126 Identities=17% Similarity=0.153 Sum_probs=91.4
Q ss_pred cceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCC----------CCccHhhHHHHHHH-
Q 043429 131 RGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDAS----------QGVEAQTLANVYLA- 199 (646)
Q Consensus 131 ~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~----------~g~~~qt~~~~~~~- 199 (646)
+..|++.....+.+. ++.+++|||+|++.|...|..+++.++++|+|+|.+ +.........|+..
T Consensus 145 ~~~TiGi~~~~~~~~----~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i 220 (340)
T 4fid_A 145 RTKTTGIHEYDFVVK----DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDI 220 (340)
T ss_dssp CCCCCSCEEEEEESS----SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHH
T ss_pred ccceeeeEEEEEEee----eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHH
Confidence 445666655555443 799999999999999999999999999999999998 34444444344333
Q ss_pred HH----cCCCeEEEEeccCCCC------------------CCchHHHHHHHHHh-----------CC------------C
Q 043429 200 LE----NNLEIIPVLNKIDLPG------------------AEPSRVAREIEEVI-----------GL------------D 234 (646)
Q Consensus 200 ~~----~~~piIvViNKiDl~~------------------~~~~~~~~el~~~l-----------~~------------~ 234 (646)
.. .++|+++|+||+|+.. .+.++..+.+.+.+ .. .
T Consensus 221 ~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (340)
T 4fid_A 221 MTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNE 300 (340)
T ss_dssp HHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------C
T ss_pred hhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCc
Confidence 32 3789999999999742 12344555555555 00 1
Q ss_pred cccccccccccccchhHHHHHHHHhC
Q 043429 235 CTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 235 ~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
...++++||+++.||+.+|+.+.+.+
T Consensus 301 ~iy~h~TsA~dt~nv~~vF~~v~~~I 326 (340)
T 4fid_A 301 KVYTNPTNATDGSNIKRVFMLAVDVI 326 (340)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeeCcHHHHHHHHHHHHHH
Confidence 23578999999999999999988755
No 197
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.25 E-value=1.1e-11 Score=134.42 Aligned_cols=166 Identities=19% Similarity=0.249 Sum_probs=72.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
.+|+|+|++|+|||||+++|++....... .+....+ ...|+......+.+...+....+++|||||+.++.
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~--~~~~~~~-------~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~ 102 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPE--YPGPSHR-------IKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAV 102 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCC--CCSCC------------CCEEEEEECC------CEEEEEEECC------
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCC--CCCcccC-------CccceeeeeEEEEEecCCcccceeeeechhhhhhc
Confidence 57899999999999999999764321111 0000000 01122222222212222234578999999997652
Q ss_pred h------hH--------h-----------hhhhhcc--ceEEEEeCC-CCccHhhHHHHHHHHHcCCCeEEEEeccCCCC
Q 043429 166 Y------EV--------S-----------RSLAACE--GALLVVDAS-QGVEAQTLANVYLALENNLEIIPVLNKIDLPG 217 (646)
Q Consensus 166 ~------~~--------~-----------~~l~~ad--~~IlVvDa~-~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~ 217 (646)
. .+ . ..+..++ ++|++++++ .+....+. .|...+..++|+|+|+||+|+..
T Consensus 103 ~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~lk~L~~~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 103 DNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EFMKRLHEKVNIIPLIAKADTLT 181 (418)
T ss_dssp -----CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HHHHHHTTTSEEEEEEESTTSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HHHHHHhccCcEEEEEEcccCcc
Confidence 1 00 1 1122333 355555554 46666554 34445556899999999999864
Q ss_pred CC-chHHHHHHHHHhCCCcccccccccccccchhHHHHHHHHhCC
Q 043429 218 AE-PSRVAREIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 218 ~~-~~~~~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
.. .....+++.+.+.....+++++||+++.++++++..+.+.+|
T Consensus 182 ~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 182 PEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 32 111122333332222235899999999999998887776554
No 198
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.25 E-value=2.9e-11 Score=128.53 Aligned_cols=84 Identities=18% Similarity=0.138 Sum_probs=56.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCC---------------C
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENE---------------P 150 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~---------------~ 150 (646)
.+|+|+|.+|+|||||+++|+..... ....++.|+......+.+. +. .
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~---------------v~~~p~tTi~p~~g~v~~~--~~r~~~l~~~~~~~~~~~ 65 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIE---------------AANYPFCTIEPNTGVVPMP--DPRLDALAEIVKPERILP 65 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC---------------------CCCCCCCCSSEEECC--CHHHHHHHHHHCCSEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCc---------------ccCCCCceECceEEEEecC--Ccccceeeeeecccceee
Confidence 47999999999999999999873211 1122333444433333222 11 2
Q ss_pred eEEEEEeCCCCccchh-------hHhhhhhhccceEEEEeCCC
Q 043429 151 FCLNLIDTPGHVDFSY-------EVSRSLAACEGALLVVDASQ 186 (646)
Q Consensus 151 ~~l~liDTPG~~df~~-------~~~~~l~~ad~~IlVvDa~~ 186 (646)
..+++|||||+.++.. ....+++.+|++++|+|+++
T Consensus 66 ~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 5799999999988642 23456889999999999986
No 199
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.23 E-value=6.5e-11 Score=126.50 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=82.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH 161 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~ 161 (646)
.+...+|+|+|.||+|||||+|+|.+... .+...+++|+......+.+. +..+.|+||||.
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~---------------~v~~~pftT~~~~~g~~~~~----~~~i~l~D~pGl 129 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTES---------------EAAEYEFTTLVTVPGVIRYK----GAKIQMLDLPGI 129 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBCC---------------CGGGTCSSCCCEEEEEEEET----TEEEEEEECGGG
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCCC---------------cccCCCCceeeeeeEEEEeC----CcEEEEEeCCCc
Confidence 34567899999999999999999976221 12345677888887777776 789999999998
Q ss_pred ccch-------hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH------cCCCeEEEEeccCCC
Q 043429 162 VDFS-------YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE------NNLEIIPVLNKIDLP 216 (646)
Q Consensus 162 ~df~-------~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~------~~~piIvViNKiDl~ 216 (646)
.+-. ..+...++.||++++|+|++++... ...+...+. ...|.++++||+|..
T Consensus 130 ~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~--~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 130 IDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHH--KQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp CCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHH--HHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred cCCchhhhHHHHHHHHHHHhcCccccccccCccHHH--HHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 6522 2345678889999999999976432 222222222 257889999999964
No 200
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.22 E-value=2.4e-11 Score=123.05 Aligned_cols=110 Identities=21% Similarity=0.208 Sum_probs=71.8
Q ss_pred CeEEEEEeCCCCccchhh------HhhhhhhccceEEEEeCCCCccHhhHHHH-----HHHHHcCCCeEEEEeccCCCCC
Q 043429 150 PFCLNLIDTPGHVDFSYE------VSRSLAACEGALLVVDASQGVEAQTLANV-----YLALENNLEIIPVLNKIDLPGA 218 (646)
Q Consensus 150 ~~~l~liDTPG~~df~~~------~~~~l~~ad~~IlVvDa~~g~~~qt~~~~-----~~~~~~~~piIvViNKiDl~~~ 218 (646)
.+.+.||||||+.++... +..++.. +++++++|+............ ......++|+++|+||+|+...
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSE 186 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCH
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccccc
Confidence 468899999999875432 2234455 788889998776555443211 1122358999999999998653
Q ss_pred Cc-hHHHH----------HH-----------------HHHhCCCcccccccccccccchhHHHHHHHHhCC
Q 043429 219 EP-SRVAR----------EI-----------------EEVIGLDCTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 219 ~~-~~~~~----------el-----------------~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
.. .+..+ .+ .+.++. ..+++++||++|.|+++++++|.+.++
T Consensus 187 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 187 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLP-PVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSC-CCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcC-cccceEEEecCcccHHHHHHHHHHHhc
Confidence 21 11111 11 122222 236899999999999999999988764
No 201
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.22 E-value=6e-11 Score=126.75 Aligned_cols=86 Identities=16% Similarity=0.105 Sum_probs=56.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEe------------c-----C
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVF------------E-----N 148 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~------------~-----~ 148 (646)
.+|+|+|.+|+|||||+++|+.....+ ...++.|+..+.....+.. . .
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v---------------~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~ 66 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALA---------------ANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPV 66 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTC---------------SSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcc---------------cCCCCceeccceeeEecChHHHHHHHHHhccccccccc
Confidence 579999999999999999998743111 1111223332222221110 0 0
Q ss_pred CCeEEEEEeCCCCccch-------hhHhhhhhhccceEEEEeCCC
Q 043429 149 EPFCLNLIDTPGHVDFS-------YEVSRSLAACEGALLVVDASQ 186 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~-------~~~~~~l~~ad~~IlVvDa~~ 186 (646)
....+++|||||+.++. ......++.||++++|+|+++
T Consensus 67 ~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 67 VPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp ECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 14679999999998753 234557899999999999986
No 202
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.18 E-value=3.4e-11 Score=128.02 Aligned_cols=126 Identities=15% Similarity=0.157 Sum_probs=90.5
Q ss_pred cceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCc----------cHhhHHHHHHHH
Q 043429 131 RGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV----------EAQTLANVYLAL 200 (646)
Q Consensus 131 ~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~----------~~qt~~~~~~~~ 200 (646)
+..|++.....+.+. .+.+++|||+|++.|...|..+++.++++|+|+|.++.. ..+....|...+
T Consensus 177 ~~~T~Gi~~~~~~~~----~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i 252 (353)
T 1cip_A 177 RVKTTGIVETHFTFK----DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSI 252 (353)
T ss_dssp CCCCCSEEEEEEEET----TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHH
T ss_pred cCceeceEEEEEeeC----CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHH
Confidence 344666655555443 799999999999999999999999999999999999843 344444444433
Q ss_pred H-----cCCCeEEEEeccCCCC------------------CCchHHHHHHHHHh-CC------Ccccccccccccccchh
Q 043429 201 E-----NNLEIIPVLNKIDLPG------------------AEPSRVAREIEEVI-GL------DCTNAILCSAKEGIGIN 250 (646)
Q Consensus 201 ~-----~~~piIvViNKiDl~~------------------~~~~~~~~el~~~l-~~------~~~~i~~vSAk~g~GV~ 250 (646)
. .++|+++|+||+|+.. .+.++..+.+...+ .+ ....+++|||++|.||+
T Consensus 253 ~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~ 332 (353)
T 1cip_A 253 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQ 332 (353)
T ss_dssp HTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHH
T ss_pred HcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHH
Confidence 3 3689999999999841 12233333333221 11 23468899999999999
Q ss_pred HHHHHHHHhC
Q 043429 251 EILNAIVKRI 260 (646)
Q Consensus 251 eLl~~I~~~i 260 (646)
++|+++.+.+
T Consensus 333 ~vF~~v~~~i 342 (353)
T 1cip_A 333 FVFDAVTDVI 342 (353)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 203
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.15 E-value=9.8e-11 Score=115.76 Aligned_cols=164 Identities=19% Similarity=0.268 Sum_probs=89.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccc-ccccc---ccccccccccceeeeeeEEEEE----EE---------
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKRE-MKEQF---LDNMDLERERGITIKLQAARMR----YV--------- 145 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~-~~~~~---~d~~~~e~e~giTi~~~~~~~~----~~--------- 145 (646)
.+.++|+|+|++|+|||||+++|+.......... ....+ .|....+. .|. ....+. +.
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~ 110 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEK-HGA----KVVPLNTGKECHLDAHLVGHA 110 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHT-TTC----EEEEEECTTCSSCCHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHh-cCC----cEEEecCCceEeccHHHHHHH
Confidence 3568999999999999999999997532211100 00000 00000000 000 000000 00
Q ss_pred e---cCCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCC---C
Q 043429 146 F---ENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGA---E 219 (646)
Q Consensus 146 ~---~~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~---~ 219 (646)
. ...+..+.++||+|...... ..-...+..+.++|+..+...... .....+.|.++|+||+|+... .
T Consensus 111 ~~~l~~~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~iiv~NK~Dl~~~~~~~ 183 (226)
T 2hf9_A 111 LEDLNLDEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIEK----HPGIMKTADLIVINKIDLADAVGAD 183 (226)
T ss_dssp HTTSCGGGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTTT----CHHHHTTCSEEEEECGGGHHHHTCC
T ss_pred HHHHhcCCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHhh----hhhHhhcCCEEEEeccccCchhHHH
Confidence 0 00133678899998522111 011223456778887544322211 011146899999999998642 2
Q ss_pred chHHHHHHHHHhCCCcccccccccccccchhHHHHHHHHhC
Q 043429 220 PSRVAREIEEVIGLDCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 220 ~~~~~~el~~~l~~~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
.++..+.+.+ ++ ...+++++||++|.|+++++++|.+.+
T Consensus 184 ~~~~~~~~~~-~~-~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 184 IKKMENDAKR-IN-PDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp HHHHHHHHHH-HC-TTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hC-CCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 3333333332 32 234699999999999999999998754
No 204
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.09 E-value=1.1e-10 Score=123.62 Aligned_cols=105 Identities=19% Similarity=0.173 Sum_probs=66.5
Q ss_pred CeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC--chHHHHHH
Q 043429 150 PFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE--PSRVAREI 227 (646)
Q Consensus 150 ~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~--~~~~~~el 227 (646)
++.+.|+||||..+-.. .....+|.+++|+|+..+...+.+.... .+++.++|+||+|+.... .....+++
T Consensus 147 ~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i----~~~~~ivvlNK~Dl~~~~~~s~~~~~~l 219 (337)
T 2qm8_A 147 GFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGI----FELADMIAVNKADDGDGERRASAAASEY 219 (337)
T ss_dssp TCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTH----HHHCSEEEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHH----hccccEEEEEchhccCchhHHHHHHHHH
Confidence 67899999999865322 2346789999999987654322111100 134678888999974321 11223344
Q ss_pred HHHhCC-C------cccccccccccccchhHHHHHHHHhCC
Q 043429 228 EEVIGL-D------CTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 228 ~~~l~~-~------~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
...+.+ . ..+++.+||++|.|+++|++.|.+..+
T Consensus 220 ~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 220 RAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 443321 1 246899999999999999999987653
No 205
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.08 E-value=3.5e-11 Score=128.96 Aligned_cols=209 Identities=11% Similarity=0.053 Sum_probs=125.3
Q ss_pred CCCEEEeeecccccccCCCcCccchhhcccccccccccccccccceeEeecCCCCCchHHhhhhhccccccCCCCCceeE
Q 043429 9 PAPVLSIKHQTFATLKKPHISSLSHFLSKSHRRCNYSLSISKHSCIFRVSCQSQATDAELATRVGQDRLLKVPASNIRNF 88 (646)
Q Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~s~~~~~s~~~~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ir~I 88 (646)
+.|.+.+.++.+.............|+.. .+..........+.+|+..+.+...+...+.... .-+++
T Consensus 98 ~~piilV~NK~DLl~~~~~~~~~~~~l~~-----~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~-------~~~~i 165 (369)
T 3ec1_A 98 DNPILLVGNKADLLPRSVKYPKLLRWMRR-----MAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR-------EGGDV 165 (369)
T ss_dssp TSCEEEEEECGGGSCTTCCHHHHHHHHHH-----HHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH-------TTSCE
T ss_pred CCCEEEEEEChhcCCCccCHHHHHHHHHH-----HHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc-------ccCcE
Confidence 67899999999976543333344445432 0111111223567889999999888887763321 12589
Q ss_pred EEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchh--
Q 043429 89 SIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSY-- 166 (646)
Q Consensus 89 ~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~-- 166 (646)
+++|.+|+|||||+|+|+...... .+.......+|+|...... .. ...+.++||||..+...
T Consensus 166 ~~vG~~nvGKStliN~L~~~~~~~---------~~~~~~~~~~gtT~~~~~~----~~---~~~~~liDtPG~~~~~~~~ 229 (369)
T 3ec1_A 166 YVVGCTNVGKSTFINRIIEEATGK---------GNVITTSYFPGTTLDMIEI----PL---ESGATLYDTPGIINHHQMA 229 (369)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHT---------TCCCEEEECTTSSCEEEEE----EC---STTCEEEECCSCCCCSSGG
T ss_pred EEEcCCCCchHHHHHHHHhhccCC---------ccceeecCCCCeEEeeEEE----Ee---CCCeEEEeCCCcCcHHHHH
Confidence 999999999999999998741000 0111234456677665432 22 22378999999865331
Q ss_pred -----hHhhhh---hhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC-chHHHHHHHHHhCCCccc
Q 043429 167 -----EVSRSL---AACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE-PSRVAREIEEVIGLDCTN 237 (646)
Q Consensus 167 -----~~~~~l---~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~-~~~~~~el~~~l~~~~~~ 237 (646)
+....+ ...|.+++++|+.+......+..+......+.|+++|+||+|..+.. .+...+.+++.+|..
T Consensus 230 ~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~--- 306 (369)
T 3ec1_A 230 HFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLGEL--- 306 (369)
T ss_dssp GGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTTT---
T ss_pred HHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcCCc---
Confidence 112233 56789999999964322111111111223478999999999976543 455566677777643
Q ss_pred ccccccccccc
Q 043429 238 AILCSAKEGIG 248 (646)
Q Consensus 238 i~~vSAk~g~G 248 (646)
+.+.++.+..+
T Consensus 307 l~p~~~~~~~~ 317 (369)
T 3ec1_A 307 LSPPSKRYAAE 317 (369)
T ss_dssp BCSSCGGGTTT
T ss_pred cCCCCchhhhh
Confidence 55555554433
No 206
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.08 E-value=1.3e-10 Score=124.03 Aligned_cols=124 Identities=17% Similarity=0.167 Sum_probs=81.7
Q ss_pred eeeeeeEEEEEEEecCCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCC----------CccHhhHHHHHHHHH-
Q 043429 133 ITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQ----------GVEAQTLANVYLALE- 201 (646)
Q Consensus 133 iTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~----------g~~~qt~~~~~~~~~- 201 (646)
.|++.....+.+. ++.+.+|||+|++.|...+..+++.++++|+|+|.++ ....+....|...+.
T Consensus 187 ~T~Gi~~~~~~~~----~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~ 262 (362)
T 1zcb_A 187 PTKGIHEYDFEIK----NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN 262 (362)
T ss_dssp CCSSEEEEEEEET----TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred CccceEEEEeeeC----CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhc
Confidence 4555555444443 7999999999999999999999999999999999998 344555444444433
Q ss_pred ----cCCCeEEEEeccCCCC-------------------CCchHHHHHHHHHh-CC------CcccccccccccccchhH
Q 043429 202 ----NNLEIIPVLNKIDLPG-------------------AEPSRVAREIEEVI-GL------DCTNAILCSAKEGIGINE 251 (646)
Q Consensus 202 ----~~~piIvViNKiDl~~-------------------~~~~~~~~el~~~l-~~------~~~~i~~vSAk~g~GV~e 251 (646)
.++|+|+|+||+|+.. .+.++..+-+...+ .+ ....+++|||++|.||++
T Consensus 263 ~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~ 342 (362)
T 1zcb_A 263 NRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRL 342 (362)
T ss_dssp CGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHH
T ss_pred chhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHH
Confidence 3689999999999842 22233322222222 21 123578999999999999
Q ss_pred HHHHHHHhC
Q 043429 252 ILNAIVKRI 260 (646)
Q Consensus 252 Ll~~I~~~i 260 (646)
+|+++.+.+
T Consensus 343 vF~~v~~~i 351 (362)
T 1zcb_A 343 VFRDVKDTI 351 (362)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998765
No 207
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.06 E-value=2.1e-10 Score=119.38 Aligned_cols=104 Identities=24% Similarity=0.268 Sum_probs=82.2
Q ss_pred EEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCc-cHhhHHHHHHHHH-cCCCeEEEEeccCCCCCCchHHHHHHHH
Q 043429 152 CLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV-EAQTLANVYLALE-NNLEIIPVLNKIDLPGAEPSRVAREIEE 229 (646)
Q Consensus 152 ~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~-~~qt~~~~~~~~~-~~~piIvViNKiDl~~~~~~~~~~el~~ 229 (646)
.+++||| +++|...+..+++.+|++|+|+|+++.. ++..+..|....+ .++|+++|+||+|+......+..+++.+
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~ 141 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEE 141 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHH
Confidence 7899999 9999999999999999999999999876 6777777765443 5899999999999965322122334445
Q ss_pred HhCCCcccccccccccccchhHHHHHHHH
Q 043429 230 VIGLDCTNAILCSAKEGIGINEILNAIVK 258 (646)
Q Consensus 230 ~l~~~~~~i~~vSAk~g~GV~eLl~~I~~ 258 (646)
.++.. .+++++||++|.|++++++.+..
T Consensus 142 ~~~~~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 142 IYSGL-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHTTT-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHhhh-CcEEEEECCCCcCHHHHHHHhcC
Confidence 55422 46999999999999999998764
No 208
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.05 E-value=2.2e-10 Score=123.37 Aligned_cols=124 Identities=17% Similarity=0.208 Sum_probs=88.6
Q ss_pred eeeeeeEEEEEEEecCCCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCC----------CccHhhHHHHHHHHH-
Q 043429 133 ITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQ----------GVEAQTLANVYLALE- 201 (646)
Q Consensus 133 iTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~----------g~~~qt~~~~~~~~~- 201 (646)
.|++.....+.+. ++.+++|||+|++.|...+..+++.++++|+|+|.++ ..+++....|...+.
T Consensus 203 ~TiGi~~~~~~~~----~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~ 278 (402)
T 1azs_C 203 LTSGIFETKFQVD----KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWN 278 (402)
T ss_dssp CCCSEEEEEEEET----TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHT
T ss_pred ceeeeEEEEeecC----CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHh
Confidence 3555555444443 6999999999999999999999999999999999998 666666666665543
Q ss_pred ----cCCCeEEEEeccCCCCCCc--------------------------------hHHHHHH-H----HHh-----CCCc
Q 043429 202 ----NNLEIIPVLNKIDLPGAEP--------------------------------SRVAREI-E----EVI-----GLDC 235 (646)
Q Consensus 202 ----~~~piIvViNKiDl~~~~~--------------------------------~~~~~el-~----~~l-----~~~~ 235 (646)
.++|+++|+||+|+..... .+...++ . +.. +...
T Consensus 279 ~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~ 358 (402)
T 1azs_C 279 NRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHY 358 (402)
T ss_dssp CTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSC
T ss_pred cccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcc
Confidence 2689999999999732100 0111111 1 111 0112
Q ss_pred ccccccccccccchhHHHHHHHHhC
Q 043429 236 TNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
..++++||+++.||+++|+++.+.+
T Consensus 359 ~~~~~TSA~d~~nV~~vF~~v~~~I 383 (402)
T 1azs_C 359 CYPHFTCAVDTENIRRVFNDCRDII 383 (402)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEeecCcCHHHHHHHHHHHH
Confidence 3467999999999999999987754
No 209
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.03 E-value=1.1e-09 Score=121.29 Aligned_cols=169 Identities=17% Similarity=0.185 Sum_probs=96.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCcccccccccccc----------ccc-cccccceeeeeeEEEEE--------
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLD----------NMD-LERERGITIKLQAARMR-------- 143 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d----------~~~-~e~e~giTi~~~~~~~~-------- 143 (646)
...++|+|+|++|+||||++++|....... +..-.+.+ .+. .....++++........
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~---G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~a 175 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRK---GWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEG 175 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHH
Confidence 456799999999999999999998532110 00000000 000 00112222211000000
Q ss_pred E-EecCCCeEEEEEeCCCCccc----hhhHhhhh--hhccceEEEEeCCCCccHhhHHHHHHHHHcCCCe-EEEEeccCC
Q 043429 144 Y-VFENEPFCLNLIDTPGHVDF----SYEVSRSL--AACEGALLVVDASQGVEAQTLANVYLALENNLEI-IPVLNKIDL 215 (646)
Q Consensus 144 ~-~~~~~~~~l~liDTPG~~df----~~~~~~~l--~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~pi-IvViNKiDl 215 (646)
. .....++.+.||||||.... ..+..... ..+|.+++|+|+..+... ...+. .+...+|+ ++|+||+|.
T Consensus 176 l~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~--~~~a~-~~~~~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 176 VEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC--EAQAK-AFKDKVDVASVIVTKLDG 252 (504)
T ss_dssp HHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH--HHHHH-HHHHHHCCCCEEEECTTS
T ss_pred HHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH--HHHHH-HHHhhcCceEEEEeCCcc
Confidence 0 00014678999999998742 22222222 268999999999987642 22222 22223785 999999998
Q ss_pred CCCCchHHHHHHHHHhCCCc---------------ccccccccccccc-hhHHHHHHHHh
Q 043429 216 PGAEPSRVAREIEEVIGLDC---------------TNAILCSAKEGIG-INEILNAIVKR 259 (646)
Q Consensus 216 ~~~~~~~~~~el~~~l~~~~---------------~~i~~vSAk~g~G-V~eLl~~I~~~ 259 (646)
... ...... +...++.+. .+.+++|+.+|.| +++|++++.+.
T Consensus 253 ~~~-~g~~l~-~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAK-GGGALS-AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCC-CTHHHH-HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccc-hHHHHH-HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 633 222222 444454431 2467799999999 99999999876
No 210
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.00 E-value=2.2e-10 Score=121.72 Aligned_cols=112 Identities=9% Similarity=0.050 Sum_probs=79.3
Q ss_pred CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCC----------CCccHhhHHHHHHHHH-----cCCCeEEEEecc
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDAS----------QGVEAQTLANVYLALE-----NNLEIIPVLNKI 213 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~----------~g~~~qt~~~~~~~~~-----~~~piIvViNKi 213 (646)
+.+.+++|||+|++.|...+..+++.++++|+|+|.+ +..+.+....|...+. .++|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 4689999999999999999999999999999999998 4455555555554443 368999999999
Q ss_pred CCCCC-----C-------------------chHHHHHHHHHh------C------CCcccccccccccccchhHHHHHHH
Q 043429 214 DLPGA-----E-------------------PSRVAREIEEVI------G------LDCTNAILCSAKEGIGINEILNAIV 257 (646)
Q Consensus 214 Dl~~~-----~-------------------~~~~~~el~~~l------~------~~~~~i~~vSAk~g~GV~eLl~~I~ 257 (646)
|+... . .++..+-+.+.+ + .....+++|||++|.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 97321 0 111111122221 1 1122368999999999999999998
Q ss_pred HhC
Q 043429 258 KRI 260 (646)
Q Consensus 258 ~~i 260 (646)
+.+
T Consensus 341 ~~I 343 (354)
T 2xtz_A 341 ETL 343 (354)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 211
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.98 E-value=1.2e-10 Score=124.76 Aligned_cols=209 Identities=14% Similarity=0.060 Sum_probs=120.3
Q ss_pred CCCEEEeeecccccccCCCcCccchhhcccccccccccccccccceeEeecCCCCCchHHhhhhhccccccCCCCCceeE
Q 043429 9 PAPVLSIKHQTFATLKKPHISSLSHFLSKSHRRCNYSLSISKHSCIFRVSCQSQATDAELATRVGQDRLLKVPASNIRNF 88 (646)
Q Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~s~~~~~s~~~~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ir~I 88 (646)
+.|.+.+.++.+.............|+.. .+..........+.+|+..+.+...+...+.... . -+++
T Consensus 96 ~~p~ilV~NK~DL~~~~~~~~~~~~~l~~-----~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~-~------~~~i 163 (368)
T 3h2y_A 96 NNKVLLVGNKADLIPKSVKHDKVKHWMRY-----SAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR-G------GKDV 163 (368)
T ss_dssp SSCEEEEEECGGGSCTTSCHHHHHHHHHH-----HHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH-T------TSCE
T ss_pred CCcEEEEEEChhcCCcccCHHHHHHHHHH-----HHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc-c------cceE
Confidence 78999999999976443333334444332 0111111223567889999999888887763321 1 1589
Q ss_pred EEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccchhh-
Q 043429 89 SIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFSYE- 167 (646)
Q Consensus 89 ~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~~~- 167 (646)
+++|.+|+|||||+|+|+...... ..+.......+|+|...... ... ..+.++||||..+....
T Consensus 164 ~~vG~~nvGKStliN~L~~~~~~~--------~~~~~~~~~~~gtT~~~~~~----~~~---~~~~liDtPG~~~~~~~~ 228 (368)
T 3h2y_A 164 YVVGCTNVGKSTFINRMIKEFSDE--------TENVITTSHFPGTTLDLIDI----PLD---EESSLYDTPGIINHHQMA 228 (368)
T ss_dssp EEEEBTTSSHHHHHHHHHHHHTTS--------CSSCCEEECCC----CEEEE----ESS---SSCEEEECCCBCCTTSGG
T ss_pred EEecCCCCChhHHHHHHHhhhccc--------cccceecCCCCCeecceEEE----Eec---CCeEEEeCCCcCcHHHHH
Confidence 999999999999999998842110 00111234456677655432 221 23789999998654311
Q ss_pred ------Hhhh---hhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC-chHHHHHHHHHhCCCccc
Q 043429 168 ------VSRS---LAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE-PSRVAREIEEVIGLDCTN 237 (646)
Q Consensus 168 ------~~~~---l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~-~~~~~~el~~~l~~~~~~ 237 (646)
.... ....+.+++++|+.+......+..+......+.|+++|+||+|..+.. .+...+.+++.+|..
T Consensus 229 ~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~~--- 305 (368)
T 3h2y_A 229 HYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAGDL--- 305 (368)
T ss_dssp GGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTTT---
T ss_pred HHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHHHhCCc---
Confidence 1111 245678899999854322211111111123478999999999986543 345555666777653
Q ss_pred cccccccccc
Q 043429 238 AILCSAKEGI 247 (646)
Q Consensus 238 i~~vSAk~g~ 247 (646)
+.+.++.++.
T Consensus 306 l~p~~~~~~~ 315 (368)
T 3h2y_A 306 LSPPTPEELE 315 (368)
T ss_dssp BCSSCHHHHH
T ss_pred cCCCchhhHh
Confidence 5555655433
No 212
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.71 E-value=4.3e-08 Score=106.07 Aligned_cols=149 Identities=16% Similarity=0.220 Sum_probs=80.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCC
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGH 161 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~ 161 (646)
.-.+.+++|+|++|+|||||++.|++.. +... .. . ....+.+.. ...+.+...+-...++++|+||.
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~~--l~g~----~~-~----~~~~~~~~~--~i~~v~Q~~~l~~~ltv~D~~~~ 105 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNTK--FEGE----PA-T----HTQPGVQLQ--SNTYDLQESNVRLKLTIVSTVGF 105 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTSC--C----------------CCSSCEEE--EEEEEEEC--CEEEEEEEEEECC
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCcc--ccCC----cC-C----CCCccceEe--eEEEEeecCccccccchhhhhhh
Confidence 3345679999999999999999998742 1000 00 0 001122221 11111221111237899999998
Q ss_pred ccch--------------hhHhhhhh-------------hc--c-ceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEe
Q 043429 162 VDFS--------------YEVSRSLA-------------AC--E-GALLVVDASQGVEAQTLANVYLALENNLEIIPVLN 211 (646)
Q Consensus 162 ~df~--------------~~~~~~l~-------------~a--d-~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViN 211 (646)
.+.. ..+..++. .+ | ++++++|+..+....++..+. ++..+.|+|+|+|
T Consensus 106 g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk-~L~~~~~vI~Vi~ 184 (427)
T 2qag_B 106 GDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMK-KLDSKVNIIPIIA 184 (427)
T ss_dssp CC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHH-HTCSCSEEEEEES
T ss_pred hhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHH-HHhhCCCEEEEEc
Confidence 6531 11111111 11 2 366778888888877765443 3347899999999
Q ss_pred ccCCCCC-CchHHHHHHHHHhCCCcccccccccc
Q 043429 212 KIDLPGA-EPSRVAREIEEVIGLDCTNAILCSAK 244 (646)
Q Consensus 212 KiDl~~~-~~~~~~~el~~~l~~~~~~i~~vSAk 244 (646)
|+|.... ......+.+.+.+.....+++.+|.-
T Consensus 185 KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 185 KADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred chhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 9996542 23444556666565555678888853
No 213
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.69 E-value=7.5e-08 Score=103.42 Aligned_cols=87 Identities=20% Similarity=0.153 Sum_probs=59.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEec----------C---CCeE
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFE----------N---EPFC 152 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~----------~---~~~~ 152 (646)
.+++|+|++|+|||||+++|+..... .....+++|+......+.+... . -...
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg~~~a--------------~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~ 86 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITKSVLG--------------NPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAF 86 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTT--------------STTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcc--------------cccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcc
Confidence 58999999999999999999873210 1223344555555544444310 0 0246
Q ss_pred EEEEeCCCCcc-------chhhHhhhhhhccceEEEEeCCC
Q 043429 153 LNLIDTPGHVD-------FSYEVSRSLAACEGALLVVDASQ 186 (646)
Q Consensus 153 l~liDTPG~~d-------f~~~~~~~l~~ad~~IlVvDa~~ 186 (646)
+.+|||||... +...+...++.+|++++|+|+.+
T Consensus 87 i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 87 LTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred eEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88999999754 33356677889999999999874
No 214
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.65 E-value=3.1e-08 Score=96.37 Aligned_cols=100 Identities=8% Similarity=0.010 Sum_probs=69.8
Q ss_pred CCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHH---HHHHH-----cCCCeEEEEecc-CCCCCCchHHHHHHHHH
Q 043429 160 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANV---YLALE-----NNLEIIPVLNKI-DLPGAEPSRVAREIEEV 230 (646)
Q Consensus 160 G~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~---~~~~~-----~~~piIvViNKi-Dl~~~~~~~~~~el~~~ 230 (646)
|+..++..|..|+..+|++|+|||+++..-......+ ...+. .+.|++|+.||. |++++-.. .++.+.
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~---~EI~e~ 187 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPC---FYLAHE 187 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCH---HHHHHH
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCH---HHHHHH
Confidence 8888999999999999999999999986433333333 22221 478999999995 78776543 344455
Q ss_pred hCC----CcccccccccccccchhHHHHHHHHhCCC
Q 043429 231 IGL----DCTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 231 l~~----~~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
+++ ....+..|||++|+|+.+-++||++.+..
T Consensus 188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 543 23468999999999999999999987753
No 215
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.61 E-value=3.3e-07 Score=99.05 Aligned_cols=160 Identities=13% Similarity=0.136 Sum_probs=93.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCccch
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVDFS 165 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~df~ 165 (646)
..++|+|++|+|||||++.|++..... .+.-..+..+..+ .+ ..+.. .....++++|+||...-.
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~----~GsI~~~g~~~t~-~~---------~v~q~-~~~~~ltv~D~~g~~~~~ 134 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEE----EGAAKTGVVEVTM-ER---------HPYKH-PNIPNVVFWDLPGIGSTN 134 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTS----TTSCCCCC----C-CC---------EEEEC-SSCTTEEEEECCCGGGSS
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCcc----CceEEECCeecce-eE---------Eeccc-cccCCeeehHhhcccchH
Confidence 379999999999999999998732111 0011111111100 01 11221 112257899999975322
Q ss_pred hhHhhhh-----hhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCC-------C---CCchHHHHHHHHH
Q 043429 166 YEVSRSL-----AACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP-------G---AEPSRVAREIEEV 230 (646)
Q Consensus 166 ~~~~~~l-----~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~-------~---~~~~~~~~el~~~ 230 (646)
.....++ ...+..++ ++... .+.+.+.........+.|+++|.||.|+. + ....++.+.+.+.
T Consensus 135 ~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l 212 (413)
T 1tq4_A 135 FPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLN 212 (413)
T ss_dssp CCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHH
Confidence 2222333 23343343 66654 35566655555666799999999999953 1 1223344444433
Q ss_pred h-------CCCccccccccc--ccccchhHHHHHHHHhCCC
Q 043429 231 I-------GLDCTNAILCSA--KEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 231 l-------~~~~~~i~~vSA--k~g~GV~eLl~~I~~~ip~ 262 (646)
. +.+...++.+|+ .++.|+++|.+.|.+.+|.
T Consensus 213 ~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 213 CVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp HHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred HHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 1 233446899999 6777899999999999865
No 216
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.60 E-value=3.5e-08 Score=105.91 Aligned_cols=150 Identities=18% Similarity=0.173 Sum_probs=70.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecC-------------CCeE
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFEN-------------EPFC 152 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~-------------~~~~ 152 (646)
.+|+|+|.+|+|||||+++|..... .....+++|+......+.+.... ....
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~~~---------------~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~ 87 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNSQA---------------SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAF 87 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC----------------------------CCSEEEEECCCHHHHHHHHHHCCSEEECCE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc---------------cccCCCccccCceeEEEEECCccceeeccccCcccccccc
Confidence 5899999999999999999976311 12233455666555544432100 0345
Q ss_pred EEEEeCCCCccchh-------hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCc-hHHH
Q 043429 153 LNLIDTPGHVDFSY-------EVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEP-SRVA 224 (646)
Q Consensus 153 l~liDTPG~~df~~-------~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~-~~~~ 224 (646)
+++|||||+..+.. .+..+++.+|++++|+|+++......+. ...-| +|++|...... ....
T Consensus 88 i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~------~~~dP----~~di~~i~~El~l~d~ 157 (396)
T 2ohf_A 88 LNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVE------GSVDP----IRDIEIIHEELQLKDE 157 (396)
T ss_dssp EEEEECCC-----------CCHHHHHHHTSSSEEEEEEC------------------CTT----HHHHHHHHHHHHHHHH
T ss_pred cEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhc------CCCCh----HHHHHHhhhhhhhhhH
Confidence 99999999987554 4567889999999999998633221110 11112 23333211000 0001
Q ss_pred HHHHHHhCCCcccccccc--cccccchhHHHHHHHHhCCC
Q 043429 225 REIEEVIGLDCTNAILCS--AKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 225 ~el~~~l~~~~~~i~~vS--Ak~g~GV~eLl~~I~~~ip~ 262 (646)
+.+...+.. ......| ++.+.+..++++.+.+.++.
T Consensus 158 ~~~~k~~~~--~~k~~~~~g~~~~~~~~~ll~~i~~~L~e 195 (396)
T 2ohf_A 158 EMIGPIIDK--LEKVAVRGGDKKLKPEYDIMCKVKSWVID 195 (396)
T ss_dssp HHHHHHHHT--TCSCC--------CCHHHHHHHHHHHTTC
T ss_pred HHHHHhhhh--hhhhhhcccchhhhhHHHHHHHHHHHHHh
Confidence 112222211 1123344 57777888999998888755
No 217
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.60 E-value=2.5e-08 Score=103.78 Aligned_cols=95 Identities=21% Similarity=0.248 Sum_probs=70.3
Q ss_pred CccchhhHhhhhhhccceEEEEeCCCCc-cHhhHHHHHHHH-HcCCCeEEEEeccCCCCCCchHHHHHH---HHHhCCCc
Q 043429 161 HVDFSYEVSRSLAACEGALLVVDASQGV-EAQTLANVYLAL-ENNLEIIPVLNKIDLPGAEPSRVAREI---EEVIGLDC 235 (646)
Q Consensus 161 ~~df~~~~~~~l~~ad~~IlVvDa~~g~-~~qt~~~~~~~~-~~~~piIvViNKiDl~~~~~~~~~~el---~~~l~~~~ 235 (646)
++++......+++.+|++++|+|++++. ++..+..|.... ..++|+++|+||+|+.........+++ .+.++.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~-- 143 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGY-- 143 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTC--
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCC--
Confidence 5667777777899999999999999875 777777776544 468999999999998643210112222 223444
Q ss_pred ccccccccccccchhHHHHHHHH
Q 043429 236 TNAILCSAKEGIGINEILNAIVK 258 (646)
Q Consensus 236 ~~i~~vSAk~g~GV~eLl~~I~~ 258 (646)
+++++||++|.|+++|++.+..
T Consensus 144 -~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 144 -DVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp -EEEECCTTTCTTHHHHHHHTTT
T ss_pred -eEEEEECCCCCCHHHHHhhccC
Confidence 5899999999999999987654
No 218
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.56 E-value=1.2e-07 Score=103.36 Aligned_cols=109 Identities=15% Similarity=0.148 Sum_probs=70.7
Q ss_pred CCeEEEEEeCCCCccchhhHhhh------hhhccceEEEEeCCCCccHhhHHHHHHHHHcCC-C-eEEEEeccCCCCCCc
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRS------LAACEGALLVVDASQGVEAQTLANVYLALENNL-E-IIPVLNKIDLPGAEP 220 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~------l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~-p-iIvViNKiDl~~~~~ 220 (646)
.++.+.||||||........... +..+|.+++|+|+..+.. ...........+ | ..+|+||+|... ..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~~~~~i~gvVlnK~D~~~-~~ 254 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFKEAVGEIGSIIVTKLDGSA-KG 254 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHHTTSCSCEEEEEECSSSCS-TT
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHhhcccCCeEEEEeCCCCcc-ch
Confidence 36788999999987643222221 225789999999988742 222223344457 7 889999999753 22
Q ss_pred hHHHHHHHHHhCCC---------------cccccccccccccc-hhHHHHHHHHhCCC
Q 043429 221 SRVAREIEEVIGLD---------------CTNAILCSAKEGIG-INEILNAIVKRIPP 262 (646)
Q Consensus 221 ~~~~~el~~~l~~~---------------~~~i~~vSAk~g~G-V~eLl~~I~~~ip~ 262 (646)
.... .+...++.+ ..+..++|+..|.| +..|++.+.+.++.
T Consensus 255 g~~l-~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~e 311 (432)
T 2v3c_C 255 GGAL-SAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVDE 311 (432)
T ss_dssp HHHH-HHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSCS
T ss_pred HHHH-HHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHHh
Confidence 2232 355555432 23456889999999 99888888776544
No 219
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.45 E-value=3.1e-07 Score=93.62 Aligned_cols=101 Identities=8% Similarity=0.007 Sum_probs=74.6
Q ss_pred CCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHH---HH----H-HcCCCeEEEEec-cCCCCCCchHHHHHHHH
Q 043429 159 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY---LA----L-ENNLEIIPVLNK-IDLPGAEPSRVAREIEE 229 (646)
Q Consensus 159 PG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~---~~----~-~~~~piIvViNK-iDl~~~~~~~~~~el~~ 229 (646)
.|+..++..|..|+..+|++|+|||+++..-......+. .. . ..+.|++|+.|| .|++++-.. .++.+
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~---~EI~e 271 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPC---FYLAH 271 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCH---HHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCH---HHHHH
Confidence 588889999999999999999999999875433332221 11 1 158999999997 588876543 34555
Q ss_pred HhCCC----cccccccccccccchhHHHHHHHHhCCC
Q 043429 230 VIGLD----CTNAILCSAKEGIGINEILNAIVKRIPP 262 (646)
Q Consensus 230 ~l~~~----~~~i~~vSAk~g~GV~eLl~~I~~~ip~ 262 (646)
.+++. ...+..|||++|+|+.+-++||.+.+..
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 55442 3468999999999999999999998754
No 220
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.44 E-value=4.4e-07 Score=92.78 Aligned_cols=120 Identities=19% Similarity=0.254 Sum_probs=68.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCcccccccccccccccc---ccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCc
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDL---ERERGITIKLQAARMRYVFENEPFCLNLIDTPGHV 162 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~---e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~ 162 (646)
.+++|+|++|+|||||++.|++...... +.-..+..+. ...++++.-.+. .+-...++++|+||..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~----G~i~~~g~~i~~~~~~~~i~~v~q~-------~~~~~~ltv~d~~~~g 71 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRK----ASSWNREEKIPKTVEIKAIGHVIEE-------GGVKMKLTVIDTPGFG 71 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC----------------CCCCCSCCEEEESCC-----------CCEEEEECCCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCC----CccccCCcccCcceeeeeeEEEeec-------CCCcCCceEEechhhh
Confidence 5899999999999999999988432211 1101110011 011122211111 1113478999999975
Q ss_pred cchh------hHh--------h--------------hhhhccceEEEEeCC-CCccHhhHHHHHHHHHcCCCeEEEEecc
Q 043429 163 DFSY------EVS--------R--------------SLAACEGALLVVDAS-QGVEAQTLANVYLALENNLEIIPVLNKI 213 (646)
Q Consensus 163 df~~------~~~--------~--------------~l~~ad~~IlVvDa~-~g~~~qt~~~~~~~~~~~~piIvViNKi 213 (646)
+... .+. . .+..++++++++|.. .+....+...+....+. +++++|+||+
T Consensus 72 ~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~ 150 (270)
T 3sop_A 72 DQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKA 150 (270)
T ss_dssp CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTG
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEecc
Confidence 4211 111 1 112257789999955 78888887666555555 9999999999
Q ss_pred CCCC
Q 043429 214 DLPG 217 (646)
Q Consensus 214 Dl~~ 217 (646)
|...
T Consensus 151 D~lt 154 (270)
T 3sop_A 151 DTMT 154 (270)
T ss_dssp GGSC
T ss_pred ccCC
Confidence 9754
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.30 E-value=9.3e-07 Score=90.93 Aligned_cols=100 Identities=23% Similarity=0.294 Sum_probs=69.1
Q ss_pred EEeCCCCc-cchhhHhhhhhhccceEEEEeCCCCccHhh--HHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHh
Q 043429 155 LIDTPGHV-DFSYEVSRSLAACEGALLVVDASQGVEAQT--LANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVI 231 (646)
Q Consensus 155 liDTPG~~-df~~~~~~~l~~ad~~IlVvDa~~g~~~qt--~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l 231 (646)
+-+.|||. ....++...+..+|+++.|+|+.++.+... +..|. .++|.++|+||+|+... ...+...+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l----~~kp~ilVlNK~DL~~~---~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL----KNKPRIMLLNKADKADA---AVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC----SSSCEEEEEECGGGSCH---HHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH----CCCCEEEEEECcccCCH---HHHHHHHHHH
Confidence 34579997 456778889999999999999999877653 22222 68999999999999652 2223333333
Q ss_pred CCCcccccccccccccchhHHHHHHHHhCC
Q 043429 232 GLDCTNAILCSAKEGIGINEILNAIVKRIP 261 (646)
Q Consensus 232 ~~~~~~i~~vSAk~g~GV~eLl~~I~~~ip 261 (646)
.-...+++++||++|.|+++|++.+.+.++
T Consensus 76 ~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 76 ENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 211225899999999999999998877654
No 222
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.24 E-value=3.6e-06 Score=91.52 Aligned_cols=92 Identities=18% Similarity=0.191 Sum_probs=54.7
Q ss_pred CeEEEEEeCCCCccchhhHhh------hhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCCchH
Q 043429 150 PFCLNLIDTPGHVDFSYEVSR------SLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPGAEPSR 222 (646)
Q Consensus 150 ~~~l~liDTPG~~df~~~~~~------~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~~~~ 222 (646)
++.+.||||||.......... ....+|.++||+|++.|.... .........++ ..+|+||+|.... ..
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~~~~i~gVIlTKlD~~~~-gG- 256 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKEATPIGSIIVTKLDGSAK-GG- 256 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHHSCTTEEEEEECCSSCSS-HH-
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHhhCCCeEEEEECCCCccc-cc-
Confidence 588999999996543322221 223468899999999864432 22234443444 5689999997532 21
Q ss_pred HHHHHHHHhCCCcccccccccccccchhH
Q 043429 223 VAREIEEVIGLDCTNAILCSAKEGIGINE 251 (646)
Q Consensus 223 ~~~el~~~l~~~~~~i~~vSAk~g~GV~e 251 (646)
....+....+. |+.+++. |+++++
T Consensus 257 ~~ls~~~~~g~---PI~fig~--Ge~vdd 280 (443)
T 3dm5_A 257 GALSAVAATGA---PIKFIGT--GEKIDD 280 (443)
T ss_dssp HHHHHHHTTCC---CEEEEEC--SSSTTC
T ss_pred HHHHHHHHHCC---CEEEEEc--CCChHH
Confidence 22233333444 4666664 777754
No 223
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.16 E-value=1.6e-06 Score=92.69 Aligned_cols=96 Identities=25% Similarity=0.185 Sum_probs=69.1
Q ss_pred CCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHH---HcCCCeEEEEeccCCCCCCc--hHHH---HHHHHHh
Q 043429 160 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL---ENNLEIIPVLNKIDLPGAEP--SRVA---REIEEVI 231 (646)
Q Consensus 160 G~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~---~~~~piIvViNKiDl~~~~~--~~~~---~el~~~l 231 (646)
..++|...+..+.+.+|++++|+|+++.. ..|...+ ..+.|+++|+||+|+..... +... .+..+..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~ 129 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQL 129 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHc
Confidence 45778888888889999999999998742 2222211 23899999999999865431 2222 2233445
Q ss_pred CCCcccccccccccccchhHHHHHHHHhC
Q 043429 232 GLDCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 232 ~~~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
|....+++++||++|.|+++|++.|.+..
T Consensus 130 g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 130 GLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp TCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 66545789999999999999999997754
No 224
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.13 E-value=2.2e-06 Score=91.52 Aligned_cols=102 Identities=23% Similarity=0.185 Sum_probs=69.4
Q ss_pred EeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC--chHHHHHH---HHH
Q 043429 156 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE--PSRVAREI---EEV 230 (646)
Q Consensus 156 iDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~--~~~~~~el---~~~ 230 (646)
+++ .+++|...+..+...++++++|+|+++...... ..+... -.+.|+++|+||+|+.... .+...+.+ .+.
T Consensus 54 v~~-~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~-~~l~~~-l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~ 130 (369)
T 3ec1_A 54 VPL-DDDDFLSMLHRIGESKALVVNIVDIFDFNGSFI-PGLPRF-AADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEE 130 (369)
T ss_dssp ------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCC-SSHHHH-CTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHT
T ss_pred CcC-CHHHHHHHHHHhhccCcEEEEEEECCCCCCchh-hHHHHH-hCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHH
Confidence 344 378899888888899999999999998653211 111111 2388999999999986543 22222332 333
Q ss_pred hCCCcccccccccccccchhHHHHHHHHhC
Q 043429 231 IGLDCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 231 l~~~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
.|....+++++||++|.|+++|++.|.+..
T Consensus 131 ~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 131 LGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 455445789999999999999999998765
No 225
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.06 E-value=1e-05 Score=83.73 Aligned_cols=94 Identities=18% Similarity=0.173 Sum_probs=57.4
Q ss_pred CCeEEEEEeCCCCcc--chhhHh------hhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCC
Q 043429 149 EPFCLNLIDTPGHVD--FSYEVS------RSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPGAE 219 (646)
Q Consensus 149 ~~~~l~liDTPG~~d--f~~~~~------~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~ 219 (646)
.++.+.||||||... ...... .....+|.+++|+|+..+. +..... ......++ ..+|+||+|... .
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~~-~~~~~~~~i~gvVlnk~D~~~-~ 254 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ--KAYDLA-SKFNQASKIGTIIITKMDGTA-K 254 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHH-HHHHHTCTTEEEEEECGGGCT-T
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH--HHHHHH-HHHHhhCCCCEEEEeCCCCCc-c
Confidence 467899999999876 322221 2345689999999998652 222222 22333577 778999999642 2
Q ss_pred chHHHHHHHHHhCCCcccccccccccccchhHH
Q 043429 220 PSRVAREIEEVIGLDCTNAILCSAKEGIGINEI 252 (646)
Q Consensus 220 ~~~~~~el~~~l~~~~~~i~~vSAk~g~GV~eL 252 (646)
.. ....+...++. |+.+++ +|++++++
T Consensus 255 ~g-~~~~~~~~~~~---pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 255 GG-GALSAVAATGA---TIKFIG--TGEKIDEL 281 (297)
T ss_dssp HH-HHHHHHHTTTC---CEEEEE--CSSSTTCE
T ss_pred hH-HHHHHHHHHCc---CEEEEe--CCCChhhc
Confidence 22 22344444554 355555 67777653
No 226
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.98 E-value=5.8e-06 Score=89.77 Aligned_cols=92 Identities=20% Similarity=0.201 Sum_probs=54.8
Q ss_pred CCeEEEEEeCCCCcc------chhhHhhhhh--hccceEEEEeCCCCccHhhHHHHHHHHH-cCCCeEEEEeccCCCCCC
Q 043429 149 EPFCLNLIDTPGHVD------FSYEVSRSLA--ACEGALLVVDASQGVEAQTLANVYLALE-NNLEIIPVLNKIDLPGAE 219 (646)
Q Consensus 149 ~~~~l~liDTPG~~d------f~~~~~~~l~--~ad~~IlVvDa~~g~~~qt~~~~~~~~~-~~~piIvViNKiDl~~~~ 219 (646)
.++.+.|+||||... +..++....+ ..|.++||+|+..|...... ...+. .--+..+|+||+|.. +.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~---a~~f~~~~~~~gVIlTKlD~~-a~ 253 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL---ASRFHQASPIGSVIITKMDGT-AK 253 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH---HHHHHHHCSSEEEEEECGGGC-SC
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH---HHHHhcccCCcEEEEeccccc-cc
Confidence 367889999999644 2233333222 35899999999987443322 22222 234578999999975 33
Q ss_pred chHHHHHHHHHhCCCcccccccccccccchh
Q 043429 220 PSRVAREIEEVIGLDCTNAILCSAKEGIGIN 250 (646)
Q Consensus 220 ~~~~~~el~~~l~~~~~~i~~vSAk~g~GV~ 250 (646)
.... -.+....+.+ +.+++. |++++
T Consensus 254 ~G~a-ls~~~~~g~P---i~fig~--Ge~v~ 278 (433)
T 3kl4_A 254 GGGA-LSAVVATGAT---IKFIGT--GEKID 278 (433)
T ss_dssp HHHH-HHHHHHHTCE---EEEEEC--CSSSS
T ss_pred chHH-HHHHHHHCCC---EEEEEC--CCChH
Confidence 3332 2334445554 666664 66654
No 227
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.95 E-value=1.1e-05 Score=90.77 Aligned_cols=102 Identities=20% Similarity=0.183 Sum_probs=60.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEE--e-cCCCeEEEEEeCCC
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYV--F-ENEPFCLNLIDTPG 160 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~--~-~~~~~~l~liDTPG 160 (646)
....|+|+|.+|+|||||+|+|++....+.. ....++.|... ..|. . ...+..+.|+||||
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~------------~~tt~~~T~gi----~~~~~~~~~~~~~~i~LiDTpG 100 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSL------------GSTVQSHTKGI----WMWCVPHPKKPGHILVLLDTEG 100 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCC------------CCSSSCCCCSE----EEEEEECSSSTTCEEEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcccc------------CCCCCCceeEE----EEeecccccCCCceEEEecCCC
Confidence 4578999999999999999999863211100 00111223222 1221 1 22467899999999
Q ss_pred Cccchh------hHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH
Q 043429 161 HVDFSY------EVSRSLAACEGALLVVDASQGVEAQTLANVYLALE 201 (646)
Q Consensus 161 ~~df~~------~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~ 201 (646)
..+... ....++...-..++|||+..++..+.+..+..+.+
T Consensus 101 i~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 101 LGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp BCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHT
T ss_pred cCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHH
Confidence 876432 11112333233478899888888887766555444
No 228
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.92 E-value=9.5e-06 Score=88.34 Aligned_cols=170 Identities=19% Similarity=0.186 Sum_probs=89.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccc-----------cccccceeeeeeEE-----EE---E
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMD-----------LERERGITIKLQAA-----RM---R 143 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~-----------~e~e~giTi~~~~~-----~~---~ 143 (646)
...+.|+++|+.|+||||++..|......-. +..-.+.|... .....|+.+-.... .+ .
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~--G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~ 175 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKH--KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAA 175 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTS--CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhc--CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHH
Confidence 3467899999999999999999985322110 00000000000 01112222111000 00 0
Q ss_pred E-EecCCCeEEEEEeCCCCccchhhHhhh------hhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCC
Q 043429 144 Y-VFENEPFCLNLIDTPGHVDFSYEVSRS------LAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDL 215 (646)
Q Consensus 144 ~-~~~~~~~~l~liDTPG~~df~~~~~~~------l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl 215 (646)
. .....++.+.||||||...+....... +..+|.+++|+|+..+... . ........+++ .-+|+||+|.
T Consensus 176 l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~--~-~~~~~f~~~l~i~gvVlnK~D~ 252 (433)
T 2xxa_A 176 LKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA--A-NTAKAFNEALPLTGVVLTKVDG 252 (433)
T ss_dssp HHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH--H-HHHHHHHHHSCCCCEEEECTTS
T ss_pred HHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH--H-HHHHHHhccCCCeEEEEecCCC
Confidence 0 001136889999999987654333332 3357789999999876432 2 22223333466 4579999997
Q ss_pred CCCCchHHHHHHHHHhCCCcc---------------cccccccccccc-hhHHHHHHHHh
Q 043429 216 PGAEPSRVAREIEEVIGLDCT---------------NAILCSAKEGIG-INEILNAIVKR 259 (646)
Q Consensus 216 ~~~~~~~~~~el~~~l~~~~~---------------~i~~vSAk~g~G-V~eLl~~I~~~ 259 (646)
.. ... ....+...++.+.. +--.+|+..|.| +..|++.+.+.
T Consensus 253 ~~-~~g-~~l~i~~~~~~Pi~~iG~ge~v~dl~~f~p~~~a~~l~g~gD~~~Lie~a~~~ 310 (433)
T 2xxa_A 253 DA-RGG-AALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESK 310 (433)
T ss_dssp SS-CCT-HHHHHHHHHCCCEEEEECSSSSSCEEECCHHHHHHHHHCCCTTHHHHHHHHHH
T ss_pred Cc-cHH-HHHHHHHHHCCCeEEEecCCCchhhhhcChHHHHHHHhCccchHHHHHHHHHh
Confidence 43 222 23355555654311 112346666766 77777766543
No 229
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.92 E-value=8.3e-06 Score=83.82 Aligned_cols=90 Identities=21% Similarity=0.140 Sum_probs=49.6
Q ss_pred ceeEeecCCCCCchHHhhhhhcccc-------ccCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCcccccccccccccc
Q 043429 53 CIFRVSCQSQATDAELATRVGQDRL-------LKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNM 125 (646)
Q Consensus 53 ~~~~~s~~~~~~~~~~~~~~~~~~~-------~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~ 125 (646)
....+|+.++.+.......+..... ..-......+++++|.+|+|||||+|+|+.... .
T Consensus 81 ~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~--------------~ 146 (282)
T 1puj_A 81 RSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNI--------------A 146 (282)
T ss_dssp CEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCC--------------C
T ss_pred cEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCce--------------e
Confidence 3456778888777665544322110 000112346899999999999999999986321 1
Q ss_pred ccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc
Q 043429 126 DLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD 163 (646)
Q Consensus 126 ~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d 163 (646)
.....+|+|...+...+ +..+.+|||||...
T Consensus 147 ~~~~~~g~T~~~~~~~~-------~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 147 KTGDRPGITTSQQWVKV-------GKELELLDTPGILW 177 (282)
T ss_dssp ------------CCEEE-------TTTEEEEECCCCCC
T ss_pred ecCCCCCeeeeeEEEEe-------CCCEEEEECcCcCC
Confidence 12334566766543221 34688999999865
No 230
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.87 E-value=3.7e-06 Score=85.50 Aligned_cols=92 Identities=18% Similarity=0.213 Sum_probs=61.7
Q ss_pred CCCCccch-hhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCCchHHHHHHHHH---hCC
Q 043429 158 TPGHVDFS-YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEV---IGL 233 (646)
Q Consensus 158 TPG~~df~-~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~---l~~ 233 (646)
.|||.... .++...+..+|+++.|+|+.++........ . .+ ++|.++|+||+|+.... ..++..+. .|.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~-ll--~k~~iivlNK~DL~~~~---~~~~~~~~~~~~g~ 76 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-D-FS--RKETIILLNKVDIADEK---TTKKWVEFFKKQGK 76 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-C-CT--TSEEEEEEECGGGSCHH---HHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-H-hc--CCCcEEEEECccCCCHH---HHHHHHHHHHHcCC
Confidence 48997643 577889999999999999998876543211 1 11 89999999999997531 12222222 344
Q ss_pred CcccccccccccccchhHHHHHHHHhC
Q 043429 234 DCTNAILCSAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 234 ~~~~i~~vSAk~g~GV~eLl~~I~~~i 260 (646)
++ .+||++|.|+++|++.+.+.+
T Consensus 77 ---~v-~iSa~~~~gi~~L~~~l~~~~ 99 (262)
T 3cnl_A 77 ---RV-ITTHKGEPRKVLLKKLSFDRL 99 (262)
T ss_dssp ---CE-EECCTTSCHHHHHHHHCCCTT
T ss_pred ---eE-EEECCCCcCHHHHHHHHHHhh
Confidence 46 999999999999998875543
No 231
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.80 E-value=1.3e-05 Score=81.46 Aligned_cols=79 Identities=20% Similarity=0.210 Sum_probs=48.4
Q ss_pred EeecCCCCCchHHhhhhhccccccCCCCCceeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceee
Q 043429 56 RVSCQSQATDAELATRVGQDRLLKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITI 135 (646)
Q Consensus 56 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi 135 (646)
.+|+.++.+...+...+.... .+++++|.+|+|||||+|+|+..... ......|+|.
T Consensus 79 ~iSa~~~~gi~~L~~~l~~~~---------~~v~~vG~~~vGKSslin~l~~~~~~--------------~~~~~~g~T~ 135 (262)
T 3cnl_A 79 ITTHKGEPRKVLLKKLSFDRL---------ARVLIVGVPNTGKSTIINKLKGKRAS--------------SVGAQPGITK 135 (262)
T ss_dssp EECCTTSCHHHHHHHHCCCTT---------CEEEEEESTTSSHHHHHHHHHTTCC------------------------C
T ss_pred EEECCCCcCHHHHHHHHHHhh---------hheEEeCCCCCCHHHHHHHHhccccc--------------ccCCCCCCcc
Confidence 677777777666665532111 58999999999999999999863211 1122346666
Q ss_pred eeeEEEEEEEecCCCeEEEEEeCCCCccc
Q 043429 136 KLQAARMRYVFENEPFCLNLIDTPGHVDF 164 (646)
Q Consensus 136 ~~~~~~~~~~~~~~~~~l~liDTPG~~df 164 (646)
..+... . +..+.+|||||..+.
T Consensus 136 ~~~~~~----~---~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 136 GIQWFS----L---ENGVKILDTPGILYK 157 (262)
T ss_dssp CSCEEE----C---TTSCEEESSCEECCC
T ss_pred ceEEEE----e---CCCEEEEECCCcccC
Confidence 544221 1 346789999998764
No 232
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.57 E-value=0.00024 Score=74.48 Aligned_cols=92 Identities=20% Similarity=0.219 Sum_probs=52.3
Q ss_pred CeEEEEEeCCCCccchhhHhhhh------hhccceEEEEeCCCCccHhhHHHHHHHHHcCC-CeEEEEeccCCCCCCchH
Q 043429 150 PFCLNLIDTPGHVDFSYEVSRSL------AACEGALLVVDASQGVEAQTLANVYLALENNL-EIIPVLNKIDLPGAEPSR 222 (646)
Q Consensus 150 ~~~l~liDTPG~~df~~~~~~~l------~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~-piIvViNKiDl~~~~~~~ 222 (646)
++.+.++||+|...........+ -..|-.++++|+..+.. .......+.... ..++++||+|.. +....
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~---~~~~~~~~~~~~~it~iilTKlD~~-a~~G~ 286 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNA---IVEQARQFNEAVKIDGIILTKLDAD-ARGGA 286 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHHHHHHHHHHSCCCEEEEECGGGC-SCCHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHH---HHHHHHHHHHhcCCCEEEEeCcCCc-cchhH
Confidence 45567899999754332222211 13678899999887732 222222233222 347889999963 33333
Q ss_pred HHHHHHHHhCCCcccccccccccccchhH
Q 043429 223 VAREIEEVIGLDCTNAILCSAKEGIGINE 251 (646)
Q Consensus 223 ~~~el~~~l~~~~~~i~~vSAk~g~GV~e 251 (646)
.. .+....+.+ +.+++ +|+++++
T Consensus 287 ~l-~~~~~~~~p---i~~i~--~Ge~v~d 309 (328)
T 3e70_C 287 AL-SISYVIDAP---ILFVG--VGQGYDD 309 (328)
T ss_dssp HH-HHHHHHTCC---EEEEE--CSSSTTC
T ss_pred HH-HHHHHHCCC---EEEEe--CCCCccc
Confidence 33 344455654 66666 7777754
No 233
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.40 E-value=0.00041 Score=66.60 Aligned_cols=81 Identities=15% Similarity=0.168 Sum_probs=54.8
Q ss_pred CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHc-----CCCeEEEEeccCCCCCCchHH
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPGAEPSRV 223 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~-----~~piIvViNKiDl~~~~~~~~ 223 (646)
..|.+.++|||+.. .......+..+|.+++++..+... ......+....+. ++++.+|+|++|.......+.
T Consensus 74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~~~~~ 150 (206)
T 4dzz_A 74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMATMLNVL 150 (206)
T ss_dssp TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEEEEHHH
T ss_pred CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCchHHHHH
Confidence 35889999999876 456667888999999999988766 4444444333322 467899999999543333444
Q ss_pred HHHHHHHhCC
Q 043429 224 AREIEEVIGL 233 (646)
Q Consensus 224 ~~el~~~l~~ 233 (646)
.+.+++ ++.
T Consensus 151 ~~~l~~-~~~ 159 (206)
T 4dzz_A 151 KESIKD-TGV 159 (206)
T ss_dssp HHHHHH-HTC
T ss_pred HHHHHH-cCC
Confidence 444443 554
No 234
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.25 E-value=0.00063 Score=77.23 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=21.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
++.++|+|++|+|||||++.|.+.
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSC
T ss_pred CCeEEEECCCCChHHHHHHHHhCC
Confidence 356999999999999999999874
No 235
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.15 E-value=0.00078 Score=73.95 Aligned_cols=157 Identities=18% Similarity=0.181 Sum_probs=75.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhc----CCcccccccccccc----cccc-ccccceeeeeeEEEEEE--------E-
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMT----GTVQKREMKEQFLD----NMDL-ERERGITIKLQAARMRY--------V- 145 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~----~~i~~~~~~~~~~d----~~~~-e~e~giTi~~~~~~~~~--------~- 145 (646)
.-..++|+|.+|+|||||+..|.... |.+.-.+ .+.+.. .+.. ...+++.+-.+...... .
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g-~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAA-GDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC-CCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEec-CcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 34579999999999999999988632 1111000 000000 0000 01122222111100000 0
Q ss_pred ecCCCeEEEEEeCCCCccchh----hHhh---hhh-----hccceEEEEeCCCCccHhhHHHHHHHH-HcCCCeEEEEec
Q 043429 146 FENEPFCLNLIDTPGHVDFSY----EVSR---SLA-----ACEGALLVVDASQGVEAQTLANVYLAL-ENNLEIIPVLNK 212 (646)
Q Consensus 146 ~~~~~~~l~liDTPG~~df~~----~~~~---~l~-----~ad~~IlVvDa~~g~~~qt~~~~~~~~-~~~~piIvViNK 212 (646)
....++.+.|+||+|...... +... ..+ ..+-++||+|++.|.... ....... ..++ ..+|+||
T Consensus 371 a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al--~~ak~f~~~~~i-tgvIlTK 447 (503)
T 2yhs_A 371 AKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV--SQAKLFHEAVGL-TGITLTK 447 (503)
T ss_dssp HHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH--HHHHHHHHHTCC-SEEEEEC
T ss_pred HHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH--HHHHHHHhhcCC-CEEEEEc
Confidence 001356788999999854322 2111 111 134578999998774322 1111111 1233 4678999
Q ss_pred cCCCCCCchHHHHHHHHHhCCCcccccccccccccchhH
Q 043429 213 IDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGINE 251 (646)
Q Consensus 213 iDl~~~~~~~~~~el~~~l~~~~~~i~~vSAk~g~GV~e 251 (646)
+|-. +.... .-.+...++.+ +.+ .-+|+++++
T Consensus 448 LD~t-akgG~-~lsi~~~~~~P---I~f--ig~Ge~vdD 479 (503)
T 2yhs_A 448 LDGT-AKGGV-IFSVADQFGIP---IRY--IGVGERIED 479 (503)
T ss_dssp GGGC-SCCTH-HHHHHHHHCCC---EEE--EECSSSGGG
T ss_pred CCCc-ccccH-HHHHHHHHCCC---EEE--EecCCChhh
Confidence 9953 33222 33455556654 444 335555544
No 236
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.13 E-value=0.00021 Score=74.04 Aligned_cols=83 Identities=22% Similarity=0.298 Sum_probs=57.7
Q ss_pred hhhhhccceEEEEeCCCCccH-hhHHHHHH-HHHcCCCeEEEEeccCCCCCCch-HHHHHHHHH---hCCCccccccccc
Q 043429 170 RSLAACEGALLVVDASQGVEA-QTLANVYL-ALENNLEIIPVLNKIDLPGAEPS-RVAREIEEV---IGLDCTNAILCSA 243 (646)
Q Consensus 170 ~~l~~ad~~IlVvDa~~g~~~-qt~~~~~~-~~~~~~piIvViNKiDl~~~~~~-~~~~el~~~---l~~~~~~i~~vSA 243 (646)
..++.+|.+++|+|+..+... ..+..+.. +...++|.++|+||+|+...... +..+++.+. .|. +++.+||
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~---~v~~~sa 158 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGY---DVYLTSS 158 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTC---CEEECCH
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCC---eEEEEec
Confidence 468889999999999966443 33344433 33478999999999999754220 123333333 454 5899999
Q ss_pred ccccchhHHHHH
Q 043429 244 KEGIGINEILNA 255 (646)
Q Consensus 244 k~g~GV~eLl~~ 255 (646)
++|.|+++|++.
T Consensus 159 ~~~~g~~~L~~~ 170 (307)
T 1t9h_A 159 KDQDSLADIIPH 170 (307)
T ss_dssp HHHTTCTTTGGG
T ss_pred CCCCCHHHHHhh
Confidence 999999887664
No 237
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.06 E-value=0.0042 Score=64.73 Aligned_cols=81 Identities=22% Similarity=0.329 Sum_probs=47.3
Q ss_pred CCeEEEEEeCCCCccchhhHhh-------hh-----hhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCC
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSR-------SL-----AACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDL 215 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~-------~l-----~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl 215 (646)
.++.+.||||||.......... .+ ..+|.+++|+|+..+ ..++.... .....++ .-+|+||+|.
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~-~~~~~~~i~GvVltk~d~ 266 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAE-EFSKVADVSGIILTKMDS 266 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHH-HHTTTSCCCEEEEECGGG
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHH-HHhhcCCCcEEEEeCCCC
Confidence 4688999999997654322211 11 137888999999865 23333322 2222344 4588999996
Q ss_pred CCCCchHHHHHHHHHhCCC
Q 043429 216 PGAEPSRVAREIEEVIGLD 234 (646)
Q Consensus 216 ~~~~~~~~~~el~~~l~~~ 234 (646)
... .. ....+...++.+
T Consensus 267 ~~~-~g-~~~~~~~~~~~P 283 (320)
T 1zu4_A 267 TSK-GG-IGLAIKELLNIP 283 (320)
T ss_dssp CSC-TT-HHHHHHHHHCCC
T ss_pred CCc-hh-HHHHHHHHHCcC
Confidence 432 22 334555566765
No 238
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.03 E-value=0.0011 Score=68.49 Aligned_cols=90 Identities=13% Similarity=0.174 Sum_probs=48.6
Q ss_pred CeEEEEEeCCCCccchhh----Hhhhhh--hccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCCchH
Q 043429 150 PFCLNLIDTPGHVDFSYE----VSRSLA--ACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPGAEPSR 222 (646)
Q Consensus 150 ~~~l~liDTPG~~df~~~----~~~~l~--~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~~~~ 222 (646)
++.+.|+||||....... ....+. ..+.+++|+|++.+. +....+..... .++ .-+|+||+|.... ...
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~--~~~~~~~~~~~-~l~~~giVltk~D~~~~-~g~ 257 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKY--EDMKHIVKRFS-SVPVNQYIFTKIDETTS-LGS 257 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCH--HHHHHHTTTTS-SSCCCEEEEECTTTCSC-CHH
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCH--HHHHHHHHHHh-cCCCCEEEEeCCCcccc-hhH
Confidence 678899999998754332 222222 256789999998653 22322222111 222 4567799997532 232
Q ss_pred HHHHHHHHhCCCcccccccccccccch
Q 043429 223 VAREIEEVIGLDCTNAILCSAKEGIGI 249 (646)
Q Consensus 223 ~~~el~~~l~~~~~~i~~vSAk~g~GV 249 (646)
. ..+...++.+ +.+++ .|+++
T Consensus 258 ~-~~~~~~~~~p---i~~i~--~ge~v 278 (296)
T 2px0_A 258 V-FNILAESKIG---VGFMT--NGQNV 278 (296)
T ss_dssp H-HHHHHTCSCC---CSEEC--CSSCT
T ss_pred H-HHHHHHHCcC---EEEEE--CCCCC
Confidence 2 2344445543 44443 45554
No 239
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.90 E-value=0.0038 Score=64.21 Aligned_cols=79 Identities=11% Similarity=0.127 Sum_probs=48.5
Q ss_pred CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-----cCCCeE-EEEeccCCCCCCchH
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEII-PVLNKIDLPGAEPSR 222 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-----~~~piI-vViNKiDl~~~~~~~ 222 (646)
..|.+.|||||+.... ..+...+..||.+|+|++++.. +......+...++ .+++++ +|+|+++. ..
T Consensus 155 ~~yD~ViiD~p~~~~~-~~~~~~l~~aD~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~-----~~ 227 (307)
T 3end_A 155 DDTDVVIFDVLGDVVC-GGFAAPLQHADQAVVVTANDFD-SIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA-----TD 227 (307)
T ss_dssp SSCSEEEEEECCSSCC-GGGGGGGGTCSEEEEEECSSHH-HHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC-----CH
T ss_pred ccCCEEEEeCCCccch-HHHHHHHHHCCEEEEEecCcHH-HHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc-----HH
Confidence 3588999999986542 2234567889999999977542 2233323333332 345544 89999983 13
Q ss_pred HHHHHHHHhCCC
Q 043429 223 VAREIEEVIGLD 234 (646)
Q Consensus 223 ~~~el~~~l~~~ 234 (646)
..+++.+.++.+
T Consensus 228 ~~~~~~~~~g~~ 239 (307)
T 3end_A 228 EVDRFCKETNFR 239 (307)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHcCCC
Confidence 455666666643
No 240
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.85 E-value=0.012 Score=57.04 Aligned_cols=82 Identities=12% Similarity=0.095 Sum_probs=53.6
Q ss_pred CCeEEEEEeCCCC-ccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-cCCCeEEEEeccCCCC-CCchHHHH
Q 043429 149 EPFCLNLIDTPGH-VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-NNLEIIPVLNKIDLPG-AEPSRVAR 225 (646)
Q Consensus 149 ~~~~l~liDTPG~-~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-~~~piIvViNKiDl~~-~~~~~~~~ 225 (646)
..+.+.++|||+. .. ......+..+|.+|+++..+...-......+....+ .+.++.+|+|++|... ....+..+
T Consensus 66 ~~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~ 143 (209)
T 3cwq_A 66 PKYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYPSKDGDEARQ 143 (209)
T ss_dssp GGCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTTSCHHHHHHH
T ss_pred hcCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCccchHHHHHHH
Confidence 3678999999987 43 345567889999999998875433333333333333 2678999999999754 33334444
Q ss_pred HHHHHhCC
Q 043429 226 EIEEVIGL 233 (646)
Q Consensus 226 el~~~l~~ 233 (646)
.+++ ++.
T Consensus 144 ~l~~-~g~ 150 (209)
T 3cwq_A 144 LLTT-AGL 150 (209)
T ss_dssp HHHH-TTC
T ss_pred HHHH-cCC
Confidence 4544 553
No 241
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.79 E-value=0.0021 Score=66.58 Aligned_cols=93 Identities=23% Similarity=0.267 Sum_probs=50.0
Q ss_pred CCeEEEEEeCCCCccchhhHh-------hhh-----hhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCC
Q 043429 149 EPFCLNLIDTPGHVDFSYEVS-------RSL-----AACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDL 215 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~-------~~l-----~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl 215 (646)
.++.+.++||||......... +.+ ..+|.+++|+|+..+. ..+.......+ ..+ .-+|+||+|.
T Consensus 185 ~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~a~~~~~-~~~i~gvVlTk~D~ 261 (306)
T 1vma_A 185 RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKE-AVNVTGIILTKLDG 261 (306)
T ss_dssp TTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHH-HSCCCEEEEECGGG
T ss_pred cCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHHHHHHHh-cCCCCEEEEeCCCC
Confidence 357789999999744332221 122 1367889999998442 22222222222 233 4577899996
Q ss_pred CCCCchHHHHHHHHHhCCCcccccccccccccchhH
Q 043429 216 PGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGINE 251 (646)
Q Consensus 216 ~~~~~~~~~~el~~~l~~~~~~i~~vSAk~g~GV~e 251 (646)
. +.... .-.+....+.+ +.+++ .|+++++
T Consensus 262 ~-~~gG~-~l~~~~~~~~P---i~~i~--~Ge~~~d 290 (306)
T 1vma_A 262 T-AKGGI-TLAIARELGIP---IKFIG--VGEKAED 290 (306)
T ss_dssp C-SCTTH-HHHHHHHHCCC---EEEEE--CSSSGGG
T ss_pred c-cchHH-HHHHHHHHCCC---EEEEe--CCCChhh
Confidence 4 33333 34566666764 44543 2444443
No 242
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.75 E-value=0.0017 Score=68.54 Aligned_cols=87 Identities=17% Similarity=0.142 Sum_probs=53.4
Q ss_pred hhhhhccceEEEEeCCCCccHhhHHHHH-HHHHcCCCeEEEEeccCCCCCCchHHHHHHHHHhCCCcccccccccccccc
Q 043429 170 RSLAACEGALLVVDASQGVEAQTLANVY-LALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIG 248 (646)
Q Consensus 170 ~~l~~ad~~IlVvDa~~g~~~qt~~~~~-~~~~~~~piIvViNKiDl~~~~~~~~~~el~~~l~~~~~~i~~vSAk~g~G 248 (646)
...+.+|.+++|.......+...+..+. .+...++|.++|+||+|+......+..+++...+.-...+++.+||++|.|
T Consensus 126 ~i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~g 205 (358)
T 2rcn_A 126 PIAANIDQIVIVSAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDG 205 (358)
T ss_dssp EEEECCCEEEEEEESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBT
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcC
Confidence 3467889888764443223333333333 334579999999999999753221112333333211112489999999999
Q ss_pred hhHHHHHH
Q 043429 249 INEILNAI 256 (646)
Q Consensus 249 V~eLl~~I 256 (646)
+++|...+
T Consensus 206 l~~L~~~~ 213 (358)
T 2rcn_A 206 LKPLEEAL 213 (358)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99988754
No 243
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.63 E-value=0.0022 Score=69.33 Aligned_cols=81 Identities=31% Similarity=0.342 Sum_probs=46.2
Q ss_pred CCeEEEEEeCCCCccchhhHh----h--hhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCCch
Q 043429 149 EPFCLNLIDTPGHVDFSYEVS----R--SLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPGAEPS 221 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~----~--~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~~~ 221 (646)
.++.+.||||||......... . ....+|.+++|+|+..+... . .........++ ..+|+||+|... ...
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~a--v-~~a~~f~~~l~i~GVIlTKlD~~~-~~g 254 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEA--L-SVARAFDEKVGVTGLVLTKLDGDA-RGG 254 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHH--H-HHHHHHHHHTCCCEEEEESGGGCS-SCH
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHH--H-HHHHHHHhcCCceEEEEeCcCCcc-cHH
Confidence 467899999999764322111 1 12247889999999865222 2 22222333354 567899999642 222
Q ss_pred HHHHHHHHHhCCC
Q 043429 222 RVAREIEEVIGLD 234 (646)
Q Consensus 222 ~~~~el~~~l~~~ 234 (646)
. ...+....+.+
T Consensus 255 ~-alsi~~~~g~P 266 (425)
T 2ffh_A 255 A-ALSARHVTGKP 266 (425)
T ss_dssp H-HHHHHHHHCCC
T ss_pred H-HHHHHHHHCCC
Confidence 2 23344555654
No 244
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.45 E-value=0.0086 Score=65.08 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
.++.-|+|+|..++|||||+|+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 45678999999999999999999974
No 245
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.41 E-value=0.0039 Score=64.47 Aligned_cols=91 Identities=20% Similarity=0.235 Sum_probs=48.8
Q ss_pred eEEEEEeCCCCccchh----hHh---hhh-----hhccceEEEEeCCCCccHhhHHHHHHHH-HcCCCeEEEEeccCCCC
Q 043429 151 FCLNLIDTPGHVDFSY----EVS---RSL-----AACEGALLVVDASQGVEAQTLANVYLAL-ENNLEIIPVLNKIDLPG 217 (646)
Q Consensus 151 ~~l~liDTPG~~df~~----~~~---~~l-----~~ad~~IlVvDa~~g~~~qt~~~~~~~~-~~~~piIvViNKiDl~~ 217 (646)
+.+.++||+|..+... +.. ..+ ...+.+++++|+..+...... ..... ..++ .++++||.|..
T Consensus 185 ~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~--~~~~~~~~~~-t~iivTh~d~~- 260 (304)
T 1rj9_A 185 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQ--AKKFHEAVGL-TGVIVTKLDGT- 260 (304)
T ss_dssp CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHH--HHHHHHHHCC-SEEEEECTTSS-
T ss_pred CCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHH--HHHHHHHcCC-cEEEEECCccc-
Confidence 4567999999754322 111 111 125567899999887543322 22222 2244 57889999864
Q ss_pred CCchHHHHHHHHHhCCCcccccccccccccchhH
Q 043429 218 AEPSRVAREIEEVIGLDCTNAILCSAKEGIGINE 251 (646)
Q Consensus 218 ~~~~~~~~el~~~l~~~~~~i~~vSAk~g~GV~e 251 (646)
+....+ -.+...++.+ +.+++ +|+++++
T Consensus 261 a~gg~~-l~i~~~~~~p---i~~ig--~Ge~~~d 288 (304)
T 1rj9_A 261 AKGGVL-IPIVRTLKVP---IKFVG--VGEGPDD 288 (304)
T ss_dssp CCCTTH-HHHHHHHCCC---EEEEE--CSSSTTC
T ss_pred ccccHH-HHHHHHHCCC---eEEEe--CCCChhh
Confidence 333332 3455556654 44443 4444443
No 246
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.03 E-value=0.005 Score=63.34 Aligned_cols=80 Identities=25% Similarity=0.277 Sum_probs=45.1
Q ss_pred CeEEEEEeCCCCccchhhHhh----h--hhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCCchH
Q 043429 150 PFCLNLIDTPGHVDFSYEVSR----S--LAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPGAEPSR 222 (646)
Q Consensus 150 ~~~l~liDTPG~~df~~~~~~----~--l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~~~~ 222 (646)
++.+.|+||||.......... . ...+|.+++|+|+..+ ........ .....++ .-+|+||+|... ....
T Consensus 180 ~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~-~~~~~~~i~givlnk~d~~~-~~g~ 255 (295)
T 1ls1_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVAR-AFDEKVGVTGLVLTKLDGDA-RGGA 255 (295)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHH-HHHHHTCCCEEEEECGGGCS-SCHH
T ss_pred CCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHH-HHhhcCCCCEEEEECCCCCc-cHHH
Confidence 678999999986533221111 1 1247888999998754 22222222 2222344 558999999643 2333
Q ss_pred HHHHHHHHhCCC
Q 043429 223 VAREIEEVIGLD 234 (646)
Q Consensus 223 ~~~el~~~l~~~ 234 (646)
.-.+....+.+
T Consensus 256 -~~~~~~~~~~p 266 (295)
T 1ls1_A 256 -ALSARHVTGKP 266 (295)
T ss_dssp -HHHHHHHHCCC
T ss_pred -HHHHHHHHCcC
Confidence 23445556664
No 247
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.87 E-value=0.0022 Score=70.48 Aligned_cols=106 Identities=12% Similarity=0.110 Sum_probs=59.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCCccccccccccccccccccccceeeeeeEEEEEEEecCCCeEEEEEeCCCCcc--
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFENEPFCLNLIDTPGHVD-- 163 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~d~~~~e~e~giTi~~~~~~~~~~~~~~~~~l~liDTPG~~d-- 163 (646)
.+|+++|.+|+||||+..+|....+... ......+.... +. ...+......+||+.|...
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~~~---~~t~~~~~d~~-r~--------------~~~g~~~~~~ifd~~g~~~~r 101 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNFIG---VPTREFNVGQY-RR--------------DMVKTYKSFEFFLPDNEEGLK 101 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEHHHH-HH--------------HHHCSCCCGGGGCTTCHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhccC---CCceEEecchh-hh--------------hhccCCCcccccCCCCHHHHH
Confidence 5899999999999999999976422100 00000000000 00 0001112335789888732
Q ss_pred chhhH--------hhhhhhccceEEEEeCCCCccHhhHHHHHHHH-HcCCCeEEEE
Q 043429 164 FSYEV--------SRSLAACEGALLVVDASQGVEAQTLANVYLAL-ENNLEIIPVL 210 (646)
Q Consensus 164 f~~~~--------~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~-~~~~piIvVi 210 (646)
+...+ ..++..+++.++|+|+++. .......|.... +.+.+++.+-
T Consensus 102 ~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~~~vv~l~ 156 (469)
T 1bif_A 102 IRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQNGYKTFFVE 156 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcCCcEEEEE
Confidence 22222 4556667899999999987 455556665444 3455555443
No 248
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.57 E-value=0.025 Score=58.27 Aligned_cols=43 Identities=19% Similarity=0.184 Sum_probs=34.4
Q ss_pred ceeEeecCCCCCchHHhhhhhccccccCCCCCceeEEEEcCCCCCHHHHHHHHH
Q 043429 53 CIFRVSCQSQATDAELATRVGQDRLLKVPASNIRNFSIIAHIDHGKSTLADKLL 106 (646)
Q Consensus 53 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll 106 (646)
..+.+|+..+.+...+...... ..++++|++|+|||||++.|+
T Consensus 144 ~~~~~SA~~g~gi~~L~~~l~G-----------~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 144 DVLKVSAKTGEGIDELVDYLEG-----------FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEECCTTTCTTHHHHHHHTTT-----------CEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHhhccC-----------cEEEEECCCCCCHHHHHHHHH
Confidence 4577888888888777765421 257999999999999999998
No 249
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.34 E-value=0.013 Score=61.93 Aligned_cols=44 Identities=25% Similarity=0.263 Sum_probs=33.2
Q ss_pred eeEeecCCCCCchHHhhhhhccccccCCCCCceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 54 IFRVSCQSQATDAELATRVGQDRLLKVPASNIRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 54 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
...+|+.++.+......... . ..++|+|++|+|||||++.|+..
T Consensus 195 v~~~Sa~~~~gl~~L~~~~~-----G------~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 195 VLMVSSHTQDGLKPLEEALT-----G------RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp EEECBTTTTBTHHHHHHHHT-----T------SEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEecCCCcCHHHHHHhcC-----C------CEEEEECCCCccHHHHHHHHhcc
Confidence 56677777777666655421 1 26899999999999999999864
No 250
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.09 E-value=0.065 Score=55.48 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
++.-++|+|..|+|||||++.|+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 3567899999999999999999874
No 251
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=95.07 E-value=0.11 Score=52.95 Aligned_cols=67 Identities=18% Similarity=0.120 Sum_probs=47.1
Q ss_pred CeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCC
Q 043429 150 PFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPG 217 (646)
Q Consensus 150 ~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~ 217 (646)
.|.+.|||||+..... ........||++|+|+.+..................+.+ +-+|+|++|...
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 4678999999876432 223345669999999998876555555555555556766 668999999644
No 252
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.03 E-value=0.0061 Score=63.05 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHH
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
..++|+|++|+|||||+|.|+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 3789999999999999999975
No 253
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=94.58 E-value=0.027 Score=45.42 Aligned_cols=62 Identities=18% Similarity=0.156 Sum_probs=53.7
Q ss_pred EEEEEcccccHHHHHHHHhhcCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEE
Q 043429 451 KIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASM 515 (646)
Q Consensus 451 ~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~ 515 (646)
...+.+|=..+|.|+.+|....+.+.+.+|. +.|.++..+|.++. ..|...|..+|+|.+.+
T Consensus 9 ~~~l~~dY~~~g~v~~~L~~~~~~I~~~~Y~--~~V~l~v~vp~~~~-~~~~~~L~d~t~G~~~~ 70 (76)
T 3lh2_S 9 EYTLQANWFDITGILWLLGQVDGKIINSDVQ--AFVLLRVALPAAKV-AEFSAKLADFSGGSLQL 70 (76)
T ss_dssp EEEEEECHHHHHHHHHHHHHTTCEEEEEEEE--EEEEEEEEECC-CC--CHHHHHHHHHTTCCCB
T ss_pred eEEEEEcccCHHHHHHHHHHCCCEEEccccc--CeEEEEEEECHHHH-HHHHHHHHHHhCCEEEE
Confidence 4567888889999999999999999999995 45999999999998 89999999999998754
No 254
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.37 E-value=0.023 Score=53.81 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhc
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
+++|+|++|+|||||++.|+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
No 255
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.20 E-value=0.024 Score=53.40 Aligned_cols=23 Identities=9% Similarity=0.353 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
.-++|+|++|+|||||++.|+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999874
No 256
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.17 E-value=0.024 Score=54.40 Aligned_cols=23 Identities=39% Similarity=0.414 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
+.++|+|++|+|||||++.|+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999874
No 257
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.95 E-value=0.035 Score=53.48 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=22.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
.-+-|+|+|++|+|||||+++|+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34578999999999999999998753
No 258
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=93.90 E-value=0.13 Score=50.94 Aligned_cols=65 Identities=18% Similarity=0.333 Sum_probs=54.9
Q ss_pred EEEEEEcccccHHHHHHHHhhcCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEE
Q 043429 450 VKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASME 516 (646)
Q Consensus 450 ~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~ 516 (646)
|++.|.+|.+|.|.+.+.|... |.+..-++.+++.....+.+|-.-- .+|.+.|++.|+|.|.+.
T Consensus 185 m~l~v~ip~~~~~~~~~~l~~~-~~v~~ee~~~dgs~~~v~~i~pg~~-~~~~~~v~~~tkG~~~~~ 249 (252)
T 2wbm_A 185 VRVAIKIPGEMAGSAYGVISNF-GKITNEEWQNDGSWIAVVEIPGGLQ-DSFYQKLSELTGGNVETR 249 (252)
T ss_dssp EEEEEEECGGGHHHHHHHHHHH-CEEEEEEECTTSCEEEEEEEEGGGH-HHHHHHHHHHTTTCCEEE
T ss_pred EEEEEEEcHHHHHHHHHHHHhh-CeeeeecccCCCcEEEEEEECCccH-HHHHHHHHHhcCCeEEEE
Confidence 6788999999999999999654 7887777766566677789998876 899999999999999765
No 259
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.71 E-value=0.14 Score=55.10 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=20.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHH
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
...-|+++|.+|+||||++.+|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999966
No 260
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.59 E-value=0.035 Score=52.81 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhc
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
-++|+|++|+|||||++.|....
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 58999999999999999998753
No 261
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.56 E-value=0.036 Score=52.35 Aligned_cols=22 Identities=36% Similarity=0.357 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
-++|+|++|+|||||++.|+..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4799999999999999999874
No 262
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.46 E-value=0.043 Score=50.42 Aligned_cols=25 Identities=24% Similarity=-0.051 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
+.|+|+|.+|+||||+++.|....+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999977533
No 263
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.42 E-value=0.04 Score=53.05 Aligned_cols=23 Identities=22% Similarity=0.114 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhc
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
-++|+|++|+|||||++.|....
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999998754
No 264
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.31 E-value=0.072 Score=51.22 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
.-..|+|+|++|+|||||++.|...
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998763
No 265
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C
Probab=93.26 E-value=0.13 Score=50.58 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=55.2
Q ss_pred EEEEEEcccccHHHHHHHHhhcCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEE
Q 043429 450 VKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEY 517 (646)
Q Consensus 450 ~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~ 517 (646)
|++.|.+|.+|.|.+++.|.. -|.+..-++.+++.....+.+|-.-- .+|++.|++.|+|.|.+..
T Consensus 170 m~~~v~vp~~~~~~~~~~l~~-~~~v~~ee~~~dgs~~~v~~Ippg~~-~~~~~~l~~~tkG~~~~~v 235 (240)
T 1t95_A 170 MEIAIKIPPEHTGRAISALYN-FGGVTREEWQRDGSWICVMRIPSGMY-GDLMDLLGKVAKGEALTKV 235 (240)
T ss_dssp EEEEEEECGGGHHHHHHHHHH-HCCEEEEEECTTSCEEEEEEEEGGGH-HHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEEEcHHHHHHHHHHHHh-hCeeeeecccCCCcEEEEEEECCccH-HHHHHHHHHhcCCeEEEEE
Confidence 678899999999999999955 47777777766566677789998876 8999999999999997654
No 266
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.21 E-value=0.052 Score=52.07 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..|+|+|++|+|||||++.|...
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999774
No 267
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.15 E-value=0.055 Score=50.88 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..++|+|++|+|||||++.|...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999999763
No 268
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.07 E-value=0.048 Score=53.12 Aligned_cols=24 Identities=33% Similarity=0.293 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhc
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
..++|+|++|+|||||++.|+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999998754
No 269
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.96 E-value=0.3 Score=43.89 Aligned_cols=22 Identities=23% Similarity=0.061 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHH
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.+|.|.|++|+|||+++..+..
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 270
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.95 E-value=0.056 Score=49.94 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
..|+|+|.+|+|||||++.|....+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999977544
No 271
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.94 E-value=0.051 Score=53.20 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhc
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
.-++|+|++|+|||||++.|+...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 468999999999999999998753
No 272
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.91 E-value=0.23 Score=47.85 Aligned_cols=23 Identities=9% Similarity=0.263 Sum_probs=21.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHH
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
...+.|.|++|+|||||+..+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 273
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.89 E-value=0.061 Score=51.32 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=22.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
...|+|+|.+|+||||++..|....+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999987543
No 274
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.86 E-value=0.063 Score=51.01 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..|+|+|++|+|||||++.|...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999774
No 275
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.79 E-value=0.055 Score=52.15 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhc
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
.-|+|+|++|+|||||++.|+...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 468999999999999999998753
No 276
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.64 E-value=0.07 Score=50.92 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcCC
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTGT 111 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~~ 111 (646)
..|+|+|.+|+|||||++.|....|.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 47999999999999999999875443
No 277
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.59 E-value=0.057 Score=50.38 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=17.9
Q ss_pred eEEEEcCCCCCHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLL 106 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll 106 (646)
-++++|++|+|||||++.++
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 58999999999999999754
No 278
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=92.52 E-value=0.23 Score=49.42 Aligned_cols=86 Identities=15% Similarity=0.076 Sum_probs=53.3
Q ss_pred CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeE-EEEeccCCC----CCC----
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEII-PVLNKIDLP----GAE---- 219 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piI-vViNKiDl~----~~~---- 219 (646)
..|.+.|||||+...........+..+|.+|+|+.............+....+.+++++ +|+|+.|.. ...
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 206 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYFVCPNCGHKSYIF 206 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCEECTTTCCEECTT
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCccCCcccccccccc
Confidence 46889999999865432222223347899999998876544444444444445688876 999998841 111
Q ss_pred chHHHHHHHHHhCCC
Q 043429 220 PSRVAREIEEVIGLD 234 (646)
Q Consensus 220 ~~~~~~el~~~l~~~ 234 (646)
.....+++.+.++.+
T Consensus 207 ~~~~~~~~~~~~g~~ 221 (262)
T 2ph1_A 207 GEGKGESLAKKYNIG 221 (262)
T ss_dssp CCCCHHHHHHHTTCS
T ss_pred cccHHHHHHHHcCCC
Confidence 122345666777654
No 279
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=92.37 E-value=0.26 Score=47.62 Aligned_cols=60 Identities=17% Similarity=0.079 Sum_probs=41.3
Q ss_pred CCCCCceEEEEEEEeecc---------------ceEEecCCCceEEc--------------cce-eeEEEeecccccccc
Q 043429 266 TAGCPFRALIFDRIIMLM---------------KLECYPPIKCKWKN--------------FKQ-VGYLSASIRSVADAR 315 (646)
Q Consensus 266 ~~~~pl~~~vf~~~~d~~---------------~~i~~~~~~~~~~v--------------aG~-Vg~i~~~i~~~~~~~ 315 (646)
+.++||++.|-+++-... +++.+++.+...+| ||| |+..+.|+ +..+++
T Consensus 2 ~~~~p~rl~v~~v~~g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~~~~~~~A~aGd~V~l~L~gi-~~~di~ 80 (204)
T 3e1y_E 2 PLGSPIRLPIVDKYKDMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVAPGENLKIRLKGI-EEEEIL 80 (204)
T ss_dssp -----CBEEEEEEEESSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECSSSSCBSEECTTSEEEEEEEES-SSSCCC
T ss_pred CCCCCEEEEEEEEEcCCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEECCEEeEEECCCCEEEEEEcCC-CHHHCc
Confidence 357899999988743221 78889998877766 998 66666666 457899
Q ss_pred cCCeeeecCcc
Q 043429 316 VGDTITHFNRK 326 (646)
Q Consensus 316 ~GDtl~~~~~~ 326 (646)
.||++++.+++
T Consensus 81 rG~vl~~~~~~ 91 (204)
T 3e1y_E 81 PGFILCDPNNL 91 (204)
T ss_dssp TTCEEBCSSSC
T ss_pred cceEEECCCCC
Confidence 99999987654
No 280
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.34 E-value=0.099 Score=48.41 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
..|+|+|.+|+|||||++.|....|
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 4799999999999999999876443
No 281
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.32 E-value=0.076 Score=50.58 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHH
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.+|+|+|.+|+||||+++.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999977
No 282
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.32 E-value=0.073 Score=49.28 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhc
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
-.++++|+.|+|||||++.|....
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 368999999999999999998753
No 283
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.31 E-value=0.11 Score=49.32 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=24.5
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 81 PASNIRNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 81 ~~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
.....+.|+|+|.+|+||||++..|....+
T Consensus 11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 11 SPDQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 344567899999999999999999986544
No 284
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.31 E-value=0.094 Score=49.35 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=21.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
...+|+|+|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999775
No 285
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.30 E-value=0.078 Score=49.93 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=21.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHH
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
++-++|+|.+|+|||||+++|+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 286
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.26 E-value=0.12 Score=53.11 Aligned_cols=45 Identities=18% Similarity=0.129 Sum_probs=35.1
Q ss_pred ceeEeecCCCCCchHHhhhhhccccccCCCCCceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 53 CIFRVSCQSQATDAELATRVGQDRLLKVPASNIRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 53 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..+..|+..+.+.......... ..++++|++|+|||||++.|...
T Consensus 148 ~~~~~SAktg~gv~~lf~~l~g-----------eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 148 PIVKTSAKTGMGIEELKEYLKG-----------KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp CEEECCTTTCTTHHHHHHHHSS-----------SEEEEECSTTSSHHHHHHHHSTT
T ss_pred cEEEEECCCCcCHHHHHHHhcC-----------CeEEEECCCCCcHHHHHHHhccc
Confidence 4567888888887777765421 25799999999999999999763
No 287
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.22 E-value=0.073 Score=48.68 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhc
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
..|+|+|.+||||||+++.| ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 36899999999999999999 533
No 288
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=92.13 E-value=0.47 Score=51.34 Aligned_cols=116 Identities=20% Similarity=0.190 Sum_probs=56.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHhcCCcc------ccc-ccccccc-ccccccccceeeeeeEEEEEEEecCCCeEE
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQ------KRE-MKEQFLD-NMDLERERGITIKLQAARMRYVFENEPFCL 153 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~~~~i~------~~~-~~~~~~d-~~~~e~e~giTi~~~~~~~~~~~~~~~~~l 153 (646)
...+.-|+|+|..++|||+|+|.|+...+.-. ..+ ....|.- ........||-+-.....+.. .++.+..+
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~-~~g~~~~v 142 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINK-PDGKKVAV 142 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEEC-TTSCEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccC-CCCCeeEE
Confidence 34678899999999999999997764321000 000 0000000 000112344433322211111 13456789
Q ss_pred EEEeCCCCccchhh-----HhhhhhhccceEEEEeCCCCccHhhHHHHHH
Q 043429 154 NLIDTPGHVDFSYE-----VSRSLAACEGALLVVDASQGVEAQTLANVYL 198 (646)
Q Consensus 154 ~liDTPG~~df~~~-----~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~ 198 (646)
.++||.|..+-... ..-++...=--++||.....+..+.+..+..
T Consensus 143 lllDTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~~~~i~~~~L~~L~~ 192 (457)
T 4ido_A 143 LLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQL 192 (457)
T ss_dssp EEEEECCBTCTTCCHHHHHHHHHHHHHHCSEEEEEEESSCCHHHHHHHHH
T ss_pred EEEeccCCCCcccCccccHHHHHHHHHHhhheeecccccCCHHHHHHHHH
Confidence 99999998663221 1112221111245556555666666655544
No 289
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.08 E-value=0.076 Score=50.84 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhc
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
+.|+|+|.+|||||||+++|....
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 568999999999999999998754
No 290
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.06 E-value=0.088 Score=49.20 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..|+|.|.+|+||||+++.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999774
No 291
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.00 E-value=0.081 Score=50.44 Aligned_cols=22 Identities=36% Similarity=0.357 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
=|+|+|++|+|||||+++|+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999874
No 292
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.98 E-value=0.047 Score=51.32 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHH
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
..++|+|.+|+|||||++.|+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999977
No 293
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.97 E-value=0.092 Score=49.26 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=21.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHH
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
++.++|+|.+|+|||||+.+|+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999986
No 294
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.97 E-value=0.11 Score=48.45 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
.++|+|+|.+|+||||++..|....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999997643
No 295
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.92 E-value=0.089 Score=50.11 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=21.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
+.|+|+|.+|+|||||++.|....+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999977543
No 296
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.91 E-value=0.085 Score=49.62 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.++|+|++|+|||||++.|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 579999999999999999975
No 297
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.90 E-value=0.095 Score=48.43 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHH
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
..|+|+|.+|+||||++++|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999976
No 298
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.88 E-value=0.066 Score=52.93 Aligned_cols=21 Identities=29% Similarity=0.246 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.++|+|++|+|||||++.|..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999998865
No 299
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=91.84 E-value=0.34 Score=47.20 Aligned_cols=77 Identities=13% Similarity=0.108 Sum_probs=50.1
Q ss_pred CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCCchHHHHHH
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPGAEPSRVAREI 227 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~~~~~~~el 227 (646)
..|.+.|||||+.... .....+..+|.+|++++++...-.............+.+ +.+|+|+.+- ....+++
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~-----~~~~~~~ 202 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN-----IKEEKLI 202 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC-----HHHHHHH
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC-----hhHHHHH
Confidence 4688999999986543 455678899999999988643222222222233344554 7899999982 2345566
Q ss_pred HHHhC
Q 043429 228 EEVIG 232 (646)
Q Consensus 228 ~~~l~ 232 (646)
.+.++
T Consensus 203 ~~~~~ 207 (254)
T 3kjh_A 203 KKHLP 207 (254)
T ss_dssp HHHSC
T ss_pred HHHhc
Confidence 66665
No 300
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.61 E-value=0.1 Score=50.52 Aligned_cols=23 Identities=22% Similarity=0.240 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..|+|+|.+|+||||+++.|...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998764
No 301
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.59 E-value=0.073 Score=52.19 Aligned_cols=21 Identities=43% Similarity=0.246 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.++|+|+.|+|||||++.+..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998865
No 302
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.58 E-value=0.11 Score=48.60 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=21.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
++|+++|.+|+||||+...|....+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999977543
No 303
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=91.56 E-value=0.39 Score=47.55 Aligned_cols=83 Identities=20% Similarity=0.201 Sum_probs=51.9
Q ss_pred CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhH---HHHHHHHH---cCCCeE-EEEeccCCCCCCch
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTL---ANVYLALE---NNLEII-PVLNKIDLPGAEPS 221 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~---~~~~~~~~---~~~piI-vViNKiDl~~~~~~ 221 (646)
..|.+.|||||+... ......+..||.+|+++.++...-.... +.+..... .+++++ +|+|+.|.......
T Consensus 110 ~~yD~iiiD~pp~~~--~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~ 187 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLS--PLTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQ 187 (257)
T ss_dssp TTCSEEEEECCSSCC--HHHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTCSHHH
T ss_pred cCCCEEEEeCCCCCC--HHHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCcHHHH
Confidence 468899999998754 3345677889999999998753222111 12211111 256664 89999986443334
Q ss_pred HHHHHHHHHhCC
Q 043429 222 RVAREIEEVIGL 233 (646)
Q Consensus 222 ~~~~el~~~l~~ 233 (646)
+..+++++.++.
T Consensus 188 ~~~~~l~~~~~~ 199 (257)
T 1wcv_1 188 QVEAQLRAHFGE 199 (257)
T ss_dssp HHHHHHHHHHGG
T ss_pred HHHHHHHHHccc
Confidence 555667776654
No 304
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.53 E-value=0.57 Score=47.38 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..+.+.|++|+|||+|+..+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999998773
No 305
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.46 E-value=0.14 Score=47.70 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
+.|+|+|.+|+||||++..|....+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999976433
No 306
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.43 E-value=0.092 Score=52.12 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
-.++|+|+.|+|||||++.+.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999998763
No 307
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.37 E-value=0.13 Score=49.52 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhc
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
+|+|+|.+|+||||+++.|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997643
No 308
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.36 E-value=0.12 Score=49.63 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhc
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
+|+|+|.+||||||+++.|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997643
No 309
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.35 E-value=0.1 Score=51.49 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..|+|+|++|+|||||++.|...
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999854
No 310
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.32 E-value=0.11 Score=49.00 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
.|+|+|.+|+||||+++.|....+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999987443
No 311
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.32 E-value=0.1 Score=49.75 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
.++|+|++|+|||||++.|...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999998874
No 312
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.29 E-value=0.12 Score=49.23 Aligned_cols=23 Identities=26% Similarity=0.147 Sum_probs=20.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHH
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
-..|+|.|.+|+||||+++.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999976
No 313
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2
Probab=91.24 E-value=0.41 Score=45.57 Aligned_cols=67 Identities=22% Similarity=0.288 Sum_probs=58.6
Q ss_pred cccEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEE
Q 043429 446 EEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASM 515 (646)
Q Consensus 446 lEP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~ 515 (646)
..|...++|.+|=..+|.|..+|.+.. .+.+.+|.+ +.+.++..+|..+. ..|...|..+|+|.+.+
T Consensus 124 ~~~~~~~~~~~~Y~~~~~v~~~l~~~~-~i~~~~y~~-~gV~~~~~v~~~~~-~~~~~~l~~~t~G~~~~ 190 (191)
T 2cve_A 124 LVERVGLAFLVPFAEVGRVYALLEARA-LKAEETYTP-EGVRFALLLPKPER-EGFLRALLDATRGQVAL 190 (191)
T ss_dssp CCCEEEEEEEECGGGHHHHHHHHHHTT-CCEEEEEET-TEEEEEEEEEHHHH-HHHHHHHHHHTTTCCEE
T ss_pred EeeeeEEEEEEchhhHHHHHHHHHHcC-ceeccEEcC-CeEEEEEEECHHHH-HHHHHHHHHHhCCeEEe
Confidence 356778889999999999999999988 999999864 23899999999998 89999999999998754
No 314
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.23 E-value=0.13 Score=50.78 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
..|+|+|++|+|||||++.|....|
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4699999999999999999977433
No 315
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.16 E-value=0.11 Score=48.10 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
.+|+|+|.+|+||||+...|....+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999977543
No 316
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.14 E-value=0.094 Score=50.85 Aligned_cols=22 Identities=18% Similarity=-0.029 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
.++|+|+.|+|||||++.|...
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 317
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.12 E-value=0.099 Score=48.79 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHH
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
-..++++|++|+|||||+..+..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999976
No 318
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.05 E-value=0.14 Score=47.44 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhc
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
..|.++|.+|+||||+.+.|....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 368999999999999999998754
No 319
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.01 E-value=0.17 Score=49.49 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=23.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
.+.+-|.|+|+|||||+|.+.+|....+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3446788999999999999999987544
No 320
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.99 E-value=0.092 Score=51.94 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.++|+|++|+|||||++.|+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998865
No 321
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.99 E-value=0.12 Score=49.24 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHH
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
..|+|+|.+|+||||+++.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 322
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.97 E-value=0.11 Score=53.64 Aligned_cols=24 Identities=25% Similarity=0.138 Sum_probs=21.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHH
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.-.-|+|+|++|+|||||++.|..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 345789999999999999999876
No 323
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.95 E-value=0.092 Score=52.80 Aligned_cols=21 Identities=33% Similarity=0.268 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.++|+|+.|+|||||++.|.+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998865
No 324
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.91 E-value=0.11 Score=51.77 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.++|+|+.|+|||||++.|..
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999876
No 325
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=90.90 E-value=0.37 Score=46.71 Aligned_cols=82 Identities=21% Similarity=0.266 Sum_probs=52.5
Q ss_pred CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCCchHHHHHH
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPGAEPSRVAREI 227 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~~~~~~~el 227 (646)
..|.+.++|||+... ......+..+|.+|+|++.....-......+....+.+.+ +.+|+|+.|..... ...+++
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~ 185 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDRD--IPPEAA 185 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCTTC--CCHHHH
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcccch--hHHHHH
Confidence 357889999998654 4556788899999999987653333333333333344555 66899999964332 223455
Q ss_pred HHHhCCC
Q 043429 228 EEVIGLD 234 (646)
Q Consensus 228 ~~~l~~~ 234 (646)
.+.++.+
T Consensus 186 ~~~~~~~ 192 (237)
T 1g3q_A 186 EDVMEVP 192 (237)
T ss_dssp HHHHCSC
T ss_pred HHHhCcc
Confidence 5666654
No 326
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.86 E-value=0.13 Score=51.68 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
-.++|+|++|+|||||++.|+..
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 36899999999999999999873
No 327
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.83 E-value=0.096 Score=52.44 Aligned_cols=21 Identities=33% Similarity=0.267 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.++|+|+.|+|||||++.+.+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999865
No 328
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.82 E-value=0.14 Score=47.69 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhc
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
..|+++|.+||||||+++.|....
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999997643
No 329
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.81 E-value=0.94 Score=46.49 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHH
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
...+.|.|++|+|||+|+..+..
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45799999999999999999966
No 330
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.81 E-value=0.15 Score=48.61 Aligned_cols=23 Identities=30% Similarity=0.314 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..|+|+|.+|+|||||++.|...
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999764
No 331
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.78 E-value=0.097 Score=53.09 Aligned_cols=21 Identities=29% Similarity=0.221 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.++|+|+.|+|||||++.|.+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998865
No 332
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=90.78 E-value=0.33 Score=48.05 Aligned_cols=81 Identities=23% Similarity=0.279 Sum_probs=52.1
Q ss_pred CeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCCCCchHHHHHHH
Q 043429 150 PFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPGAEPSRVAREIE 228 (646)
Q Consensus 150 ~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~~~~~~~~~el~ 228 (646)
.|.+.|||||+... ......+..+|.+|+|++.+..........+....+.+.+ +.+|+|++|..... ...+++.
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~~ 185 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLGIE--MAKNEIE 185 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTTHH--HHHHHHH
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCccccc--chHHHHH
Confidence 57899999998654 4556778899999999987653333333333333334555 56899999853321 3455666
Q ss_pred HHhCCC
Q 043429 229 EVIGLD 234 (646)
Q Consensus 229 ~~l~~~ 234 (646)
+.++.+
T Consensus 186 ~~~~~~ 191 (263)
T 1hyq_A 186 AILEAK 191 (263)
T ss_dssp HHTTSC
T ss_pred HHhCCC
Confidence 666643
No 333
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.77 E-value=0.13 Score=53.03 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..++|+|++|+|||||++.|+..
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 47999999999999999999874
No 334
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.75 E-value=0.1 Score=51.38 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.++|+|+.|+|||||++.|+.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999865
No 335
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.73 E-value=0.1 Score=50.88 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.++|+|+.|+|||||++.|.+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999865
No 336
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.70 E-value=0.14 Score=47.74 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..|+|.|.+|+||||+++.|...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999774
No 337
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.70 E-value=0.13 Score=49.59 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
-++|+|++|+|||||+..|+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 338
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.68 E-value=0.1 Score=51.79 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.++|+|+.|+|||||++.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999866
No 339
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.67 E-value=0.12 Score=50.45 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
-++|+|++|+|||||+..++.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 589999999999999998873
No 340
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.67 E-value=0.095 Score=52.83 Aligned_cols=21 Identities=38% Similarity=0.311 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.++|+|++|+|||||++.|.+
T Consensus 39 ~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999865
No 341
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.66 E-value=0.1 Score=51.96 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.++|+|+.|+|||||++.|..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999866
No 342
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.66 E-value=0.084 Score=51.54 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=15.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHH-Hh
Q 043429 86 RNFSIIAHIDHGKSTLADKLL-QM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll-~~ 108 (646)
.-++|+|++|+|||||++.|. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 468999999999999999998 64
No 343
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.59 E-value=0.18 Score=47.23 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhc
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
..|+|+|.+|+||||+++.|....
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 578999999999999999997643
No 344
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=90.59 E-value=0.15 Score=48.52 Aligned_cols=23 Identities=39% Similarity=0.260 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..|+|+|.+|+|||||++.|...
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998764
No 345
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.58 E-value=0.11 Score=51.58 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.++|+|+.|+|||||++.|..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999998865
No 346
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.55 E-value=0.66 Score=46.03 Aligned_cols=76 Identities=11% Similarity=0.133 Sum_probs=48.6
Q ss_pred CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-c--CCCeEEEEeccCCCCCCchHHHH
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-N--NLEIIPVLNKIDLPGAEPSRVAR 225 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-~--~~piIvViNKiDl~~~~~~~~~~ 225 (646)
..|.+.|||||+.. .......+..||.+|+++..+.. .......+...++ . +.++.+|+|+++.. ....+..+
T Consensus 143 ~~yD~viiD~pp~~--~~~~~~~l~~aD~vivv~~~~~~-s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~-~~~~~~~~ 218 (267)
T 3k9g_A 143 YKYDYIVIDTNPSL--DVTLKNALLCSDYVIIPMTAEKW-AVESLDLFNFFVRKLNLFLPIFLIITRFKKN-RTHKTLFE 218 (267)
T ss_dssp TTCSEEEEEECSSC--SHHHHHHHTTCSEEEEEEESCTT-HHHHHHHHHHHHHTTTCCCCEEEEEEEECTT-CSCCHHHH
T ss_pred cCCCEEEEECcCCc--cHHHHHHHHHCCeEEEEeCCChH-HHHHHHHHHHHHHHHhccCCEEEEEecccCc-chHHHHHH
Confidence 45789999999865 34456778889999999998653 3333333333332 2 56788999999532 22334444
Q ss_pred HHH
Q 043429 226 EIE 228 (646)
Q Consensus 226 el~ 228 (646)
.+.
T Consensus 219 ~l~ 221 (267)
T 3k9g_A 219 ILK 221 (267)
T ss_dssp HHT
T ss_pred HHh
Confidence 443
No 347
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.50 E-value=0.17 Score=47.81 Aligned_cols=24 Identities=33% Similarity=0.278 Sum_probs=21.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
...|+|+|.+||||||+++.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 468999999999999999999875
No 348
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.43 E-value=0.13 Score=51.89 Aligned_cols=21 Identities=33% Similarity=0.366 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.++|+|+.|+|||||++.|..
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999876
No 349
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.38 E-value=0.11 Score=52.11 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
.++|+|+.|+|||||++.|...
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999998663
No 350
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.37 E-value=0.97 Score=47.41 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
.++|+|++|+|||||++.++..
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999873
No 351
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.31 E-value=0.11 Score=52.21 Aligned_cols=21 Identities=29% Similarity=0.210 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.++|+|+.|+|||||++.|..
T Consensus 52 i~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEcCCCCcHHHHHHHHHc
Confidence 689999999999999998865
No 352
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.25 E-value=0.18 Score=49.95 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=22.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
.....|+|.|.+|+||||+++.|....+
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456899999999999999999877433
No 353
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=90.25 E-value=0.45 Score=48.09 Aligned_cols=83 Identities=14% Similarity=0.102 Sum_probs=51.9
Q ss_pred CCeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH------cCCC-eEEEEeccCCCCCCch
Q 043429 149 EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE------NNLE-IIPVLNKIDLPGAEPS 221 (646)
Q Consensus 149 ~~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~------~~~p-iIvViNKiDl~~~~~~ 221 (646)
..|.+.|||||+... ......+..+|.+|+++.++...-......+..... .+++ +-+|+|+.|.......
T Consensus 153 ~~yD~IiiD~pp~~~--~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~~~ 230 (298)
T 2oze_A 153 SDYDLIIIDTVPTPS--VYTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIK 230 (298)
T ss_dssp GGCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHHHH
T ss_pred cCCCEEEEECCCCcc--HHHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHHHH
Confidence 357899999998754 334556778999999998876433222222221111 3667 4589999996443334
Q ss_pred HHHHHHHHHhCC
Q 043429 222 RVAREIEEVIGL 233 (646)
Q Consensus 222 ~~~~el~~~l~~ 233 (646)
+..+++.+.++.
T Consensus 231 ~~~~~~~~~~~~ 242 (298)
T 2oze_A 231 SNLEELYKQHKE 242 (298)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHhcc
Confidence 455666666653
No 354
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.22 E-value=0.12 Score=51.64 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.++|+|+.|+|||||++.|.+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 589999999999999998865
No 355
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.20 E-value=0.17 Score=47.18 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
..|+|+|.+|+||||++..|....+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999976443
No 356
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.16 E-value=0.12 Score=51.82 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.++|+|+.|+|||||++.|.+
T Consensus 43 i~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998865
No 357
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.12 E-value=0.19 Score=47.16 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
+.|+|+|.+|+||||++..|....+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999976433
No 358
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.08 E-value=0.12 Score=52.18 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.++|+|+.|+|||||++.|+.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999866
No 359
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.05 E-value=0.18 Score=48.93 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=21.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
..|+|+|.+|+||||+++.|....+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999986443
No 360
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.94 E-value=0.13 Score=51.85 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.++|+|+.|+|||||++.|.+
T Consensus 35 ~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 689999999999999998865
No 361
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.93 E-value=0.18 Score=47.80 Aligned_cols=23 Identities=22% Similarity=0.058 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..|+|.|.+|+||||+++.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
No 362
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=89.85 E-value=0.23 Score=47.38 Aligned_cols=25 Identities=32% Similarity=0.296 Sum_probs=21.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHH
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.....|+|+|.+|+|||||++.|..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999998876
No 363
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.80 E-value=0.19 Score=48.64 Aligned_cols=24 Identities=17% Similarity=0.082 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhc
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
..|+|+|.+|+||||+++.|....
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999997643
No 364
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.80 E-value=0.13 Score=52.20 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.++|+|+.|+|||||++.|.+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 689999999999999998865
No 365
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.73 E-value=0.13 Score=51.34 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.++|+|+.|+|||||++.|.+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999998865
No 366
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.71 E-value=0.19 Score=46.22 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
+.|+|+|.+|+||||++..|....+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999977433
No 367
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.70 E-value=0.15 Score=47.31 Aligned_cols=25 Identities=20% Similarity=0.076 Sum_probs=17.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
..|.|.|.+|+||||+++.|....+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999976433
No 368
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.69 E-value=0.2 Score=45.82 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhc
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
+|+|.|.+|+||||+++.|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997743
No 369
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.66 E-value=0.22 Score=49.13 Aligned_cols=25 Identities=16% Similarity=0.140 Sum_probs=22.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
..+|+|+|.+||||||++.+|....
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999997643
No 370
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.64 E-value=0.2 Score=48.27 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
.+|+|+|.+|+||||++..|...
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999764
No 371
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.64 E-value=0.18 Score=46.98 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
+.|+|+|.+|+||||+...|....+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3699999999999999999977433
No 372
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.64 E-value=0.15 Score=53.59 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
-.+++|+|++|+|||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998753
No 373
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.59 E-value=0.2 Score=47.09 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
..|+|+|.+|+||||++..|....+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999987543
No 374
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.52 E-value=0.21 Score=45.84 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=21.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
+.+|+|+|.+||||||+...|....+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999876433
No 375
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.49 E-value=0.25 Score=46.85 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
..|+|+|.+|+||||++..|....+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999977433
No 376
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.49 E-value=0.24 Score=50.60 Aligned_cols=25 Identities=12% Similarity=-0.051 Sum_probs=21.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHH
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.....|+|+|.+|+|||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998876
No 377
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=89.49 E-value=0.21 Score=49.78 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
..|+|+|.+|+|||||+..|....+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999987543
No 378
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.45 E-value=0.21 Score=48.07 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhc
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
+|+|+|.+|+||||+++.|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997643
No 379
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.42 E-value=0.21 Score=47.27 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHH
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
..|+|+|.+|+||||+++.|..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 380
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=89.39 E-value=0.24 Score=51.34 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=22.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
....-|+|+|++|||||||++.|...
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999988764
No 381
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Probab=89.38 E-value=0.5 Score=45.87 Aligned_cols=68 Identities=18% Similarity=0.264 Sum_probs=60.6
Q ss_pred cccEEEEEEEcccccHHHHHHHHhhcCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEE
Q 043429 446 EEPFVKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASME 516 (646)
Q Consensus 446 lEP~~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~ 516 (646)
..|...++|.+|=..+|.|..+|.+..+.+.+.+|. +.+.++..+|..+. ..|...|..+|+|.+.+.
T Consensus 136 ~~~~~~~~i~~~Y~~~~~v~~~l~~~~~~i~~~~y~--~~V~~~l~v~~~~~-~~~~~~l~~~t~G~~~~~ 203 (217)
T 1vi7_A 136 KTPLTEYTLQCEYHQLTGIEALLGQCDGKIINSDYQ--AFVLLRVALPAAKV-AEFSAKLADFSRGSLQLL 203 (217)
T ss_dssp ECCCEEEEEEECTTTHHHHHHHHHHTTCEEEEEEES--SSEEEEEEECSSTH-HHHHHHHHHHHTTCCCCE
T ss_pred EeeeeEEEEEEccchHHHHHHHHHHCCCEEEceEec--CCEEEEEEECHHHH-HHHHHHHHHHhCCeEEEE
Confidence 466778889999999999999999999999999985 45999999999998 899999999999998653
No 382
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.36 E-value=0.21 Score=46.62 Aligned_cols=21 Identities=29% Similarity=0.253 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 383
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=89.32 E-value=0.17 Score=46.12 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHH
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
..++|+|++|+|||||+..+..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999977
No 384
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.23 E-value=0.2 Score=46.54 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhc
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
-.+|+|+.|+|||||+++|....
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998743
No 385
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A
Probab=89.18 E-value=0.13 Score=51.12 Aligned_cols=65 Identities=15% Similarity=0.176 Sum_probs=55.5
Q ss_pred EEEEEEcccccHHHHHHHHhhcCceEeeeeeeCCCEEEEEEEechhhhHhhHHHHhcccCcceEEEEE
Q 043429 450 VKIELLTPKEYIGSLMELAQDRRGEFKEMKYFTESRASLIYELPLAEMVGDFFDQLKSRTKGYASMEY 517 (646)
Q Consensus 450 ~~~~I~~P~e~~g~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~Pl~e~~~~f~~~Lks~T~G~as~~~ 517 (646)
|++.|.+|.+|.|.+.+.|....|.+.+.++.+ + ..+.+.+|-.-- .+|.+.|++.|+|.|.+..
T Consensus 174 m~l~v~vp~~~~~~~~~~l~~~~~~v~~ee~~~-~-~~~v~~I~pg~~-~~~~~~v~~~tkG~~~~ev 238 (252)
T 2kdo_A 174 MRLRFILPVNEGKKLKEKLKPLIKVIESEDYGQ-Q-LEIVCLIDPGCF-REIDELIKKETKGKGSLEV 238 (252)
T ss_dssp CCEEEECBHHHHHHHTTTHHHHTCEEEEECCSS-B-CCEEECCCGGGH-HHHHHHHHHHTTTTSEEEE
T ss_pred EEEEEEEcHHHHHHHHHHHHHhhCcceeeeccC-C-eEEEEEECCcch-HHHHHHHHHhcCCCEEEEE
Confidence 567899999999999999999889988877755 4 667789998876 8999999999999997553
No 386
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.06 E-value=0.23 Score=49.32 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..|+|+|++|+||||+++.|...
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999854
No 387
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.05 E-value=0.27 Score=46.80 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHH
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
..|+|.|.+|+||||+++.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 388
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.02 E-value=0.25 Score=50.70 Aligned_cols=24 Identities=33% Similarity=0.264 Sum_probs=21.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
-..|+|+|++|+|||||++.|...
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998763
No 389
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=88.94 E-value=0.12 Score=49.44 Aligned_cols=22 Identities=32% Similarity=0.255 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
-|+|.|.+|+||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999763
No 390
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=88.94 E-value=0.26 Score=50.15 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=21.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
....|.++|.+|+|||||+.+|...
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999864
No 391
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=88.92 E-value=0.22 Score=46.70 Aligned_cols=22 Identities=27% Similarity=0.128 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
-|+|.|.+|+||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999763
No 392
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=88.89 E-value=1.9 Score=41.19 Aligned_cols=86 Identities=15% Similarity=0.167 Sum_probs=50.3
Q ss_pred CCeEEEEEeCCCCccc--h--hhHhhhhhhcc-ceEEEEeCCCCccHhhHHHHHHHHHcCCCe-EEEEeccCCCCCCchH
Q 043429 149 EPFCLNLIDTPGHVDF--S--YEVSRSLAACE-GALLVVDASQGVEAQTLANVYLALENNLEI-IPVLNKIDLPGAEPSR 222 (646)
Q Consensus 149 ~~~~l~liDTPG~~df--~--~~~~~~l~~ad-~~IlVvDa~~g~~~qt~~~~~~~~~~~~pi-IvViNKiDl~~~~~~~ 222 (646)
+.|.+.||||||.... . .......+.++ .+|+|+++..+.-.+....+......++++ -+|+|++|.......+
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~~~~~~~ 186 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAE 186 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSCCTTHHH
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCchhhHHH
Confidence 3688999999976431 1 11122222233 478888775433333444444444567774 4889999965444455
Q ss_pred HHHHHHHHhCCC
Q 043429 223 VAREIEEVIGLD 234 (646)
Q Consensus 223 ~~~el~~~l~~~ 234 (646)
..+++.+.++.+
T Consensus 187 ~~~~l~~~~~~~ 198 (224)
T 1byi_A 187 YMTTLTRMIPAP 198 (224)
T ss_dssp HHHHHHHHSSSC
T ss_pred HHHHHHHHcCCC
Confidence 666777766654
No 393
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.88 E-value=0.19 Score=52.99 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=40.1
Q ss_pred eeEeccchhhHHHHHHHHHHHHcCceEEEecceeEEEEEeeCCeEEEEeCCCCCCCCcccccccccEEEEEEEc--cccc
Q 043429 383 GFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVNCVNGQTVECSNPSLLPEPGQRRSIEEPFVKIELLT--PKEY 460 (646)
Q Consensus 383 g~r~gflG~lHlei~~erL~~e~~~~v~~t~P~V~Y~e~~~~g~~~~~~~p~~~p~~~~i~~llEP~~~~~I~~--P~e~ 460 (646)
-+++.|.|.---+-+...+.++||+++.+-.-.|.| + .| .|+=.+.+.+ +.+.
T Consensus 291 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~il~g~~~~---~-~~---------------------~~~g~~~~~~~~~~~~ 345 (366)
T 3tui_C 291 MLRLEFTGQSVDAPLLSETARRFNVNNNIISAQMDY---A-GG---------------------VKFGIMLTEMHGTQQD 345 (366)
T ss_dssp EEEEEEEHHHHSSCHHHHHHHHHTCEEEEEEEEEEE---S-SS---------------------CEEEEEEEEEESCHHH
T ss_pred eEEEEecCcccchhHHHHHHHHcCCCeEEEEeeEEE---E-CC---------------------EEEEEEEEEEeCCHHH
Confidence 467777777655566777888999988655444432 1 12 2333333334 3456
Q ss_pred HHHHHHHHhhcCc
Q 043429 461 IGSLMELAQDRRG 473 (646)
Q Consensus 461 ~g~v~~~~~~rrG 473 (646)
...++..+.++.-
T Consensus 346 ~~~~~~~l~~~~~ 358 (366)
T 3tui_C 346 TQAAIAWLQEHHV 358 (366)
T ss_dssp HHHHHHHHHHTTE
T ss_pred HHHHHHHHHHcCC
Confidence 7778888876543
No 394
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.86 E-value=0.18 Score=53.03 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..++|+|++|+|||||++.|+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999999874
No 395
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=88.79 E-value=0.26 Score=46.16 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..|+++|.+|+||||++..|...
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999998763
No 396
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.79 E-value=0.2 Score=52.78 Aligned_cols=22 Identities=32% Similarity=0.274 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
-++|+|++|+|||||++.+.+.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 5899999999999999998763
No 397
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.78 E-value=0.18 Score=50.64 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
.++|+|+.|+|||||++.|...
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998663
No 398
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.76 E-value=0.25 Score=45.43 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
...+.|.|++|+|||+|+..+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999763
No 399
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=88.75 E-value=0.39 Score=46.99 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=29.1
Q ss_pred cceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCC
Q 043429 176 EGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPG 217 (646)
Q Consensus 176 d~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~ 217 (646)
+.-++++|-.+-.....++.+......++|+++++-..|-.+
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~~ 130 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKG 130 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTTS
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccccC
Confidence 356888897765554444455554556999999999988543
No 400
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=88.73 E-value=0.62 Score=46.86 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=45.1
Q ss_pred CeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCeE-EEEeccCCCC
Q 043429 150 PFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEII-PVLNKIDLPG 217 (646)
Q Consensus 150 ~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~piI-vViNKiDl~~ 217 (646)
.|.+.|||||+..... ........+|++|+|+.+..................+.+++ +|+|++|...
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence 4778999999875432 22334567899999999887554444444444445677766 8999999643
No 401
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.70 E-value=0.18 Score=51.57 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHH
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
-.++|+|+.|+|||||++.|.+
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3689999999999999998865
No 402
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.54 E-value=0.26 Score=47.56 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
+|.|+|+|||||+|.+.+|....+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999987544
No 403
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.41 E-value=0.14 Score=52.86 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHH
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
-.++|+|++|+|||||++.|+.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 3799999999999999998865
No 404
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=88.34 E-value=0.22 Score=52.34 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
-++|+|++|+|||||++.|...
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999998763
No 405
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=88.31 E-value=0.28 Score=48.88 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
...|+|+|.+|+||||++..|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999998763
No 406
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.24 E-value=0.3 Score=47.66 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
.+|+|+|.+|+||||++..|...
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999763
No 407
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=88.21 E-value=0.23 Score=52.34 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
-++|+|++|+|||||++.+.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 5899999999999999998763
No 408
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=88.17 E-value=0.99 Score=42.36 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHH
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
..+.|.|++|+|||+|+..+..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999876
No 409
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.10 E-value=0.19 Score=52.34 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..++|+|++|+|||||++.|+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999764
No 410
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.05 E-value=0.26 Score=52.12 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
-.++|+|++|+|||||++.|+..
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999999873
No 411
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=88.00 E-value=0.24 Score=52.26 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
-++|+|++|+|||||++.|.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 5899999999999999998763
No 412
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=87.96 E-value=0.31 Score=45.22 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..|+++|.+|+||||+++.|...
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988663
No 413
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=87.95 E-value=1.3 Score=44.90 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHH
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
..+.|.|++|+|||+|+..+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999976
No 414
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=87.90 E-value=0.37 Score=49.44 Aligned_cols=24 Identities=25% Similarity=0.166 Sum_probs=21.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
-..++++|+.|+|||||+..|...
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999999999874
No 415
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=87.90 E-value=0.24 Score=52.52 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
-++|+|++|+|||||++.|.+.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 5899999999999999999763
No 416
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=87.85 E-value=0.25 Score=52.35 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
-++|+|++|+|||||++.|.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 5899999999999999998763
No 417
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=87.74 E-value=0.25 Score=52.27 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
-++|+|++|+|||||++.|...
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 5899999999999999998763
No 418
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=87.73 E-value=0.3 Score=49.20 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHH
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
+.++++|++|+|||||++.+..
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4599999999999999999976
No 419
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=87.71 E-value=0.26 Score=48.86 Aligned_cols=26 Identities=12% Similarity=-0.013 Sum_probs=22.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHhc
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
....|.++|.+|+||||++..|....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999997753
No 420
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=87.70 E-value=0.31 Score=46.98 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhc
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
.+|+|+|.+|+||||++..|....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999997643
No 421
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.68 E-value=0.31 Score=47.27 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
.|+|+|.+|+||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 422
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=87.61 E-value=0.3 Score=46.90 Aligned_cols=21 Identities=10% Similarity=0.229 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.++|+|++|+|||||+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999985
No 423
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=87.51 E-value=0.36 Score=46.35 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHH
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
..|+|.|.+||||||+++.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 424
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=87.46 E-value=0.32 Score=44.23 Aligned_cols=22 Identities=36% Similarity=0.323 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
-.+|+|+.|+|||||++++...
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3589999999999999999763
No 425
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=87.19 E-value=0.32 Score=48.50 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
.+|+|+|.+|+||||+.+.|....+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999976433
No 426
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=87.19 E-value=0.32 Score=48.00 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHH
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
+.++|+|++|+|||||++.+..
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999976
No 427
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.01 E-value=0.21 Score=48.86 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
.-|+|.|..|+|||||++.|...
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999988664
No 428
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=87.00 E-value=0.37 Score=48.78 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHH
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
....|+|+|.+||||||+++.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998874
No 429
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=86.89 E-value=1.7 Score=42.92 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..+.|.|++|+|||+|+..+...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 57999999999999999999764
No 430
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=86.89 E-value=0.27 Score=54.38 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHH
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.+++|+|++|||||||++.|+.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999999976
No 431
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=86.82 E-value=1.1 Score=43.38 Aligned_cols=80 Identities=21% Similarity=0.142 Sum_probs=51.1
Q ss_pred CeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcC---CCeEEEEeccCCCCCCchHHHHH
Q 043429 150 PFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENN---LEIIPVLNKIDLPGAEPSRVARE 226 (646)
Q Consensus 150 ~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~---~piIvViNKiDl~~~~~~~~~~e 226 (646)
.|.+.|||||+... ......+..||.+++++..+...-...........+.+ ..+.+|+|++|...... .++
T Consensus 118 ~yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~~~---~~~ 192 (245)
T 3ea0_A 118 FYDYIIVDFGASID--HVGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSRIT---SDE 192 (245)
T ss_dssp HCSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTTSC---HHH
T ss_pred hCCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCCCC---HHH
Confidence 57889999998653 34556788899999999876432222223333333334 23789999999643322 256
Q ss_pred HHHHhCCC
Q 043429 227 IEEVIGLD 234 (646)
Q Consensus 227 l~~~l~~~ 234 (646)
+++.++.+
T Consensus 193 ~~~~~~~~ 200 (245)
T 3ea0_A 193 IEKVIGRP 200 (245)
T ss_dssp HHHHHTSC
T ss_pred HHHHhCCC
Confidence 66677754
No 432
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=86.68 E-value=0.31 Score=51.88 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
.++|+|++|+|||||++.|...
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 6899999999999999988763
No 433
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=86.62 E-value=0.22 Score=52.25 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
-++|+|++|+|||||++.|.+.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 5899999999999999998763
No 434
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=86.53 E-value=0.34 Score=52.11 Aligned_cols=22 Identities=27% Similarity=0.099 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
.++|+|++|+|||||++.++..
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999874
No 435
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=86.48 E-value=0.3 Score=44.80 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=21.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..++.|.|++|+|||+|+..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999999763
No 436
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=86.36 E-value=0.42 Score=45.19 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..+.|.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998763
No 437
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.36 E-value=1.4 Score=48.45 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=21.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
.+.+.|.|++|+|||||+..+....
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999998743
No 438
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=86.35 E-value=2.4 Score=39.83 Aligned_cols=40 Identities=10% Similarity=0.060 Sum_probs=26.4
Q ss_pred cceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCC
Q 043429 176 EGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDL 215 (646)
Q Consensus 176 d~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl 215 (646)
+.-++++|=.+.....-...+......++++++.+...|-
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~~Gl~~~f 115 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLTH 115 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEESBCT
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHCCCCEEEEeecccc
Confidence 3558888876655434344444455568999998988774
No 439
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=86.14 E-value=0.51 Score=49.61 Aligned_cols=24 Identities=25% Similarity=0.166 Sum_probs=21.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
-..++++|+.|+|||||+..|...
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhh
Confidence 457899999999999999999874
No 440
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=86.10 E-value=1.5 Score=39.17 Aligned_cols=22 Identities=9% Similarity=-0.004 Sum_probs=19.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHH
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.+|.|.|++|+|||+++..+..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCC
T ss_pred CcEEEECCCCccHHHHHHHHHH
Confidence 4799999999999999987743
No 441
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=86.05 E-value=0.51 Score=46.52 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHH
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.+.+.|.|++|+|||||+..+..
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 35799999999999999999976
No 442
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=86.03 E-value=0.41 Score=45.63 Aligned_cols=21 Identities=24% Similarity=0.097 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
-++|+|++|+|||||+..++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 443
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=85.97 E-value=0.47 Score=45.23 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
-..|+|+|.+||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998774
No 444
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=85.83 E-value=0.46 Score=46.82 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
..|+|.|++|+||||+++.|....+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999976443
No 445
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=85.79 E-value=0.4 Score=48.48 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
-++|+|++|+|||||+..++..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5899999999999999998763
No 446
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=85.69 E-value=0.41 Score=47.96 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHH
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
+.++|+|++|+|||||+..+..
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCcChHHHHHHHHHH
Confidence 4599999999999999999976
No 447
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=85.62 E-value=0.49 Score=45.30 Aligned_cols=22 Identities=32% Similarity=0.246 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHH
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
..|+|+|.+|+||||++..|..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998876
No 448
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=85.60 E-value=0.39 Score=52.28 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..++|+|+.|+|||||++.|++.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 47999999999999999999874
No 449
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=85.55 E-value=0.22 Score=52.38 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
-++|+|++|+|||||++.+.+.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999998763
No 450
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=85.51 E-value=0.45 Score=49.26 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..++++|++|+|||||++.+...
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999874
No 451
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=85.51 E-value=2.3 Score=43.32 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..|.|.|.+|+|||+++..+...
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHH
T ss_pred CcEEEECCCCchHHHHHHHHHHh
Confidence 47999999999999999998763
No 452
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=85.51 E-value=0.44 Score=49.87 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
-+++|+|+.|+|||||++.|.+.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999874
No 453
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=85.46 E-value=0.55 Score=48.98 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=21.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
+.|+|+|++|+|||||+.+|....+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4689999999999999999987543
No 454
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=85.44 E-value=1.5 Score=44.60 Aligned_cols=66 Identities=17% Similarity=0.133 Sum_probs=45.9
Q ss_pred CeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHHcCCCe-EEEEeccCCC
Q 043429 150 PFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEI-IPVLNKIDLP 216 (646)
Q Consensus 150 ~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~pi-IvViNKiDl~ 216 (646)
.+.+.|||||+...... .......+|.+|+|+.+..................+.++ -+|+|++|..
T Consensus 213 ~yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 46789999998764322 223446799999999988765555555555555567774 4889999964
No 455
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=85.16 E-value=0.47 Score=45.99 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
-++|+|++|+|||||+..++.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999999987
No 456
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=85.15 E-value=0.44 Score=50.17 Aligned_cols=22 Identities=18% Similarity=0.081 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
-++|+|+.|+|||||++++...
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999863
No 457
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=85.13 E-value=0.52 Score=44.48 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
.|+|.|.+|+||||+.+.|....+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 689999999999999999977433
No 458
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=85.05 E-value=1.2 Score=48.11 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
+..+.|.|++|+|||||+..+...
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Confidence 368999999999999999999763
No 459
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=84.94 E-value=0.58 Score=45.67 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=22.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
...|+|+|.+|+||||+...|....|
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999876433
No 460
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=84.68 E-value=0.54 Score=47.52 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHH
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
..|.|+|.+|+||||++++|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999976
No 461
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=84.63 E-value=0.68 Score=45.28 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=21.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
-..|+|.|.+|+||||++++|....
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998743
No 462
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=84.27 E-value=0.5 Score=51.69 Aligned_cols=23 Identities=17% Similarity=0.085 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
-.++|+|++|+|||||++.|...
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 46899999999999999999874
No 463
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=84.03 E-value=0.84 Score=47.86 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=22.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 82 ASNIRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 82 ~~~ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
...+.+|+++|.+|+||||+...|...
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 345678999999999999999888764
No 464
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=83.98 E-value=8.5 Score=39.99 Aligned_cols=84 Identities=11% Similarity=-0.017 Sum_probs=46.7
Q ss_pred cceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccCCCC-C---C---------chHHHHHHHHHhCCCccccccc
Q 043429 176 EGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPG-A---E---------PSRVAREIEEVIGLDCTNAILC 241 (646)
Q Consensus 176 d~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiDl~~-~---~---------~~~~~~el~~~l~~~~~~i~~v 241 (646)
+.+++|..+..-.-..+.+.+..+.+.++| .-+|+|++.-.. . . .....+++.+.++-...-.++.
T Consensus 232 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~~~pl 311 (348)
T 3io3_A 232 TTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELYEDYHLVKMPL 311 (348)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEC
T ss_pred eEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHHccCCCEEEecC
Confidence 467777776654455566666677778988 478999998643 1 1 1122344555553211112344
Q ss_pred ccccccchhHHHHHHHHhC
Q 043429 242 SAKEGIGINEILNAIVKRI 260 (646)
Q Consensus 242 SAk~g~GV~eLl~~I~~~i 260 (646)
-+.+=.|++.|.. +.+.+
T Consensus 312 ~~~e~~G~~~L~~-~~~~l 329 (348)
T 3io3_A 312 LGCEIRGVENLKK-FSKFL 329 (348)
T ss_dssp CSSCCCSHHHHHH-HHHHH
T ss_pred CCCCCCCHHHHHH-HHHHH
Confidence 5555567766544 33443
No 465
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=83.86 E-value=0.56 Score=50.70 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=21.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
=-.++|+|++|+|||||++.|...
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 347999999999999999999873
No 466
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=83.35 E-value=0.64 Score=44.75 Aligned_cols=23 Identities=30% Similarity=0.202 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
+-|+|+|++|+|||||+..|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999874
No 467
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=83.30 E-value=0.98 Score=44.25 Aligned_cols=63 Identities=11% Similarity=0.178 Sum_probs=42.4
Q ss_pred CeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccHhhHHHHHHHHH-cC---------CCeEEEEeccCC
Q 043429 150 PFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-NN---------LEIIPVLNKIDL 215 (646)
Q Consensus 150 ~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~qt~~~~~~~~~-~~---------~piIvViNKiDl 215 (646)
.|.+.++|||+... ......+..+|.+|++++++...- .....+...++ .+ ..+.+|+|+.|.
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSV-RDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHH-HHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHH-HHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 68899999998543 466778889999999998764322 22222222222 11 457899999984
No 468
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=83.11 E-value=0.66 Score=49.14 Aligned_cols=23 Identities=43% Similarity=0.562 Sum_probs=20.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHH
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
-..++|+|++|+|||||+..|..
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999999976
No 469
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=83.01 E-value=0.8 Score=44.91 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=21.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHH
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
..+.+.+.|++|+|||+|+..+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999976
No 470
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=82.99 E-value=0.64 Score=46.61 Aligned_cols=22 Identities=27% Similarity=0.185 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHH
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.-++|+|++|+|||||+..++.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999886
No 471
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=82.77 E-value=0.61 Score=51.82 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
-.++|+|+.|+|||||++.|.+.
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999998763
No 472
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=82.67 E-value=0.58 Score=52.44 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
-.++|+|++|+|||||++.|++.
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998763
No 473
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=82.66 E-value=0.53 Score=52.80 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHH
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
-.++|+|++|+|||||++.|++
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 3789999999999999999866
No 474
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=82.64 E-value=0.77 Score=45.82 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=21.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
.+.+.|.|++|+|||+|+.++...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 467999999999999999999763
No 475
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=82.49 E-value=0.79 Score=47.40 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhc
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
+.|+|+|++|+|||||...|....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999998754
No 476
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=82.40 E-value=0.76 Score=43.68 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
.+.|.|++|+|||||+..+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 477
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=82.35 E-value=0.76 Score=43.21 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
+-++|.|++|+|||||+-.|+..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46899999999999999999873
No 478
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=82.19 E-value=0.5 Score=48.06 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=17.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHH
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.-|+|.|.+|+||||+++.|..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999866
No 479
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=81.96 E-value=4.5 Score=38.31 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=25.5
Q ss_pred ceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCC
Q 043429 177 GALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDL 215 (646)
Q Consensus 177 ~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl 215 (646)
.-++++|=.+-.+...+..+......++|+|+.+-+.|=
T Consensus 82 ~dvViIDEaqfl~~~~v~~l~~l~~~~~~Vi~~Gl~~df 120 (191)
T 1xx6_A 82 TEVIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDMDF 120 (191)
T ss_dssp CSEEEECSGGGSCTHHHHHHHHHHHTTCEEEEEECSBCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEeccccc
Confidence 457788855554433355444445568899999888884
No 480
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=81.96 E-value=0.61 Score=47.04 Aligned_cols=78 Identities=14% Similarity=0.087 Sum_probs=48.6
Q ss_pred CeEEEEEeCCCCccchhhHhhhhhhccceEEEEeCCCCccH---hhHHH-------------H---HHHH----HcC-CC
Q 043429 150 PFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEA---QTLAN-------------V---YLAL----ENN-LE 205 (646)
Q Consensus 150 ~~~l~liDTPG~~df~~~~~~~l~~ad~~IlVvDa~~g~~~---qt~~~-------------~---~~~~----~~~-~p 205 (646)
.|.+.|||||+.. .......+..+|.+|+++..+..... ..... + .... ..+ .+
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 180 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSFVDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMD 180 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSHHHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCE
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCccHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCcccc
Confidence 5788999999875 45667788999999999987642110 11111 1 1111 224 67
Q ss_pred eEEEEeccCCCC-CCchHHHHHHHH
Q 043429 206 IIPVLNKIDLPG-AEPSRVAREIEE 229 (646)
Q Consensus 206 iIvViNKiDl~~-~~~~~~~~el~~ 229 (646)
+.+|+|++|... ....+..+.+++
T Consensus 181 ~~vV~N~~~~~~~~~~~~~~~~l~~ 205 (286)
T 2xj4_A 181 WVVLRNRLATTEARNRKRLEDRLNA 205 (286)
T ss_dssp EEEEEECCTTCCGGGHHHHHHHHHH
T ss_pred EEEEEeeecCCCcchhHHHHHHHHH
Confidence 889999999654 233444444544
No 481
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=81.94 E-value=6.9 Score=38.73 Aligned_cols=66 Identities=18% Similarity=0.148 Sum_probs=40.2
Q ss_pred CCeEEEEEeCCCCcc----ch-hhHhhhhh-hccceEEEEeCCCCccHhhHHHHHHHHHcCCC-eEEEEeccC
Q 043429 149 EPFCLNLIDTPGHVD----FS-YEVSRSLA-ACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKID 214 (646)
Q Consensus 149 ~~~~l~liDTPG~~d----f~-~~~~~~l~-~ad~~IlVvDa~~g~~~qt~~~~~~~~~~~~p-iIvViNKiD 214 (646)
..+.+.+||+||-.- .. .......+ ...-+|+|+|+..+.-.++...+......+++ .-+|+||+.
T Consensus 125 ~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~ 197 (251)
T 3fgn_A 125 RPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWP 197 (251)
T ss_dssp CTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred hcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 467789999986421 00 11111111 23458999999877655555555555566777 457889984
No 482
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=81.93 E-value=0.81 Score=46.02 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=21.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
.+.+.|.|++|+|||||+..+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 358999999999999999999763
No 483
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=81.91 E-value=0.79 Score=48.21 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=21.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHH
Q 043429 83 SNIRNFSIIAHIDHGKSTLADKLL 106 (646)
Q Consensus 83 ~~ir~I~IiG~~~~GKSTLi~~Ll 106 (646)
.+..+|.++|.+++|||||+.++-
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 346799999999999999999873
No 484
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=81.91 E-value=0.78 Score=43.90 Aligned_cols=23 Identities=35% Similarity=0.290 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHhc
Q 043429 87 NFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
-.+|+|+.|+||||+++++....
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 45899999999999999997643
No 485
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=81.78 E-value=1.3 Score=44.85 Aligned_cols=25 Identities=16% Similarity=0.086 Sum_probs=21.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..+.+.+.|++|+|||+|+.++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457788899999999999999774
No 486
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=81.53 E-value=0.52 Score=46.86 Aligned_cols=24 Identities=42% Similarity=0.531 Sum_probs=20.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHHH
Q 043429 84 NIRNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 84 ~ir~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
+...|+|.|..|+||||+++.|..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998865
No 487
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=81.46 E-value=0.8 Score=44.32 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q 043429 87 NFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.++|+|++|+|||||+.+++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999888865
No 488
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=81.33 E-value=0.61 Score=51.84 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
-++|+|+.|+|||||++.|...
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5799999999999999998763
No 489
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=81.28 E-value=0.89 Score=46.22 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHH
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
.+.+.+.|++|+|||+|+..+..
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHH
Confidence 35799999999999999999976
No 490
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=81.22 E-value=0.99 Score=45.55 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHh
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..++.|.|++|+|||+|+..+...
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988663
No 491
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=81.20 E-value=0.71 Score=52.07 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
.++|+|+.|+|||||++.|.+.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999999773
No 492
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=81.15 E-value=0.85 Score=47.47 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
+.+.|.|++|+|||||+..+...
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999774
No 493
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=81.11 E-value=0.93 Score=44.53 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=21.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHhcC
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQMTG 110 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~~~ 110 (646)
.+++|+|.+||||||++.+|....+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999977443
No 494
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=80.93 E-value=0.55 Score=52.82 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHH
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
-.++|+|++|+|||||++.|++
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3789999999999999999866
No 495
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=80.85 E-value=4.2 Score=41.22 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=17.2
Q ss_pred eeEEE-EcCCCCCHHHHHHHHHH
Q 043429 86 RNFSI-IAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~I-iG~~~~GKSTLi~~Ll~ 107 (646)
.++.+ -|++|+|||+++.++..
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHHHHHH
Confidence 34544 45699999999999976
No 496
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=80.69 E-value=6.4 Score=45.26 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=21.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHHHhc
Q 043429 85 IRNFSIIAHIDHGKSTLADKLLQMT 109 (646)
Q Consensus 85 ir~I~IiG~~~~GKSTLi~~Ll~~~ 109 (646)
+..+.+.|++|+|||+|+..+....
T Consensus 488 ~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 488 VGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHh
Confidence 3479999999999999999997743
No 497
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=80.67 E-value=0.73 Score=44.58 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHh
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
..+.+.|++|+||||++.+|...
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999773
No 498
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=80.62 E-value=0.59 Score=52.58 Aligned_cols=22 Identities=18% Similarity=0.504 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHH
Q 043429 86 RNFSIIAHIDHGKSTLADKLLQ 107 (646)
Q Consensus 86 r~I~IiG~~~~GKSTLi~~Ll~ 107 (646)
-.++|+|++|+|||||++.|++
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4799999999999999998866
No 499
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=80.42 E-value=8.7 Score=37.22 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=29.9
Q ss_pred cceEEEEeCCCCccHhhHHHHHHHHHcCCCeEEEEeccCCCCCC
Q 043429 176 EGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAE 219 (646)
Q Consensus 176 d~~IlVvDa~~g~~~qt~~~~~~~~~~~~piIvViNKiDl~~~~ 219 (646)
+.-++.||=.+-.+..-+..+......++|+++.+=..|=.+.-
T Consensus 101 ~~dvV~IDEaQFf~~~~v~~l~~la~~gi~Vi~~GLd~DF~~~~ 144 (219)
T 3e2i_A 101 NVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMDFRGEP 144 (219)
T ss_dssp TCSEEEECCGGGSCTHHHHHHHHHHHTTCEEEEEEESBCTTSCB
T ss_pred CCCEEEEechhcCCHHHHHHHHHHHHCCCEEEEeecccccccCC
Confidence 44577888766555444555555557899999999999854433
No 500
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=79.97 E-value=0.88 Score=50.53 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHh
Q 043429 87 NFSIIAHIDHGKSTLADKLLQM 108 (646)
Q Consensus 87 ~I~IiG~~~~GKSTLi~~Ll~~ 108 (646)
.++|+|+.|+|||||++.|.+.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999763
Done!