BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043430
(258 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W19|A Chain A, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis
pdb|2W19|B Chain B, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis
pdb|2W1A|A Chain A, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis With Bound Tsa
pdb|2W1A|B Chain B, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis With Bound Tsa
Length = 472
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 108/184 (58%), Gaps = 4/184 (2%)
Query: 73 VDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXMGKAFLLQG 132
+D+ +K A Q P +P + L ++ L+ PP+ G+AFLLQG
Sbjct: 36 LDAALAKPAAQQPTWPADQAL-AMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQG 94
Query: 133 GDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNG 192
GDCAE+F + +IR R LLQM VVL +G MPVVKV R+AGQ+AKPRS + +
Sbjct: 95 GDCAETFMDNTEPHIRGNVRALLQMAVVLTYGASMPVVKVARIAGQYAKPRS---ADIDA 151
Query: 193 VKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWN 252
+ L SYRGD +NG A D +R DP RL+RAY ++A +NL+RA + G A++ V WN
Sbjct: 152 LGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAMNLVRALTSSGLASLHLVHDWN 211
Query: 253 LDFT 256
+F
Sbjct: 212 REFV 215
>pdb|3RZI|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Cocrystallized And Complexed With Phenylalanine And
Tryptophan
pdb|3RZI|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Cocrystallized And Complexed With Phenylalanine And
Tryptophan
pdb|2YPO|A Chain A, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Phenylalanine Bound In Only One Site
pdb|2YPO|B Chain B, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Phenylalanine Bound In Only One Site
pdb|2YPP|A Chain A, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase In
Complex With 3 Tyrosine Molecules
pdb|2YPP|B Chain B, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase In
Complex With 3 Tyrosine Molecules
pdb|2YPQ|A Chain A, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Tryptophan And Tyrosine Bound
pdb|2YPQ|B Chain B, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Tryptophan And Tyrosine Bound
Length = 462
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 108/184 (58%), Gaps = 4/184 (2%)
Query: 73 VDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXMGKAFLLQG 132
+D+ +K A Q P +P + L ++ L+ PP+ G+AFLLQG
Sbjct: 26 LDAALAKPAAQQPTWPADQAL-AMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQG 84
Query: 133 GDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNG 192
GDCAE+F + +IR R LLQM VVL +G MPVVKV R+AGQ+AKPRS + +
Sbjct: 85 GDCAETFMDNTEPHIRGNVRALLQMAVVLTYGASMPVVKVARIAGQYAKPRS---ADIDA 141
Query: 193 VKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWN 252
+ L SYRGD +NG A D +R DP RL+RAY ++A +NL+RA + G A++ V WN
Sbjct: 142 LGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAMNLVRALTSSGLASLHLVHDWN 201
Query: 253 LDFT 256
+F
Sbjct: 202 REFV 205
>pdb|3KGF|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine And Tryptophan
pdb|3KGF|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine And Tryptophan
pdb|3NUD|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine
pdb|3NUD|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine
pdb|3NUE|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Tryptophan
pdb|3NUE|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Tryptophan
pdb|3NV8|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase In Complex With Phosphoenol
Pyruvate And Manganese (Thesit-Free)
pdb|3NV8|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase In Complex With Phosphoenol
Pyruvate And Manganese (Thesit-Free)
pdb|3PFP|A Chain A, Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate
Synthase From Mycobacterium Tuberculosis In Complex With
An Active Site Inhibitor
pdb|3PFP|B Chain B, Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate
Synthase From Mycobacterium Tuberculosis In Complex With
An Active Site Inhibitor
Length = 464
Score = 150 bits (379), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 108/184 (58%), Gaps = 4/184 (2%)
Query: 73 VDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXMGKAFLLQG 132
+D+ +K A Q P +P + L ++ L+ PP+ G+AFLLQG
Sbjct: 28 LDAALAKPAAQQPTWPADQAL-AMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQG 86
Query: 133 GDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNG 192
GDCAE+F + +IR R LLQM VVL +G MPVVKV R+AGQ+AKPRS + +
Sbjct: 87 GDCAETFMDNTEPHIRGNVRALLQMAVVLTYGASMPVVKVARIAGQYAKPRS---ADIDA 143
Query: 193 VKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWN 252
+ L SYRGD +NG A D +R DP RL+RAY ++A +NL+RA + G A++ V WN
Sbjct: 144 LGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAMNLVRALTSSGLASLHLVHDWN 203
Query: 253 LDFT 256
+F
Sbjct: 204 REFV 207
>pdb|2B7O|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
pdb|2B7O|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Length = 464
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 104/184 (56%), Gaps = 4/184 (2%)
Query: 73 VDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXMGKAFLLQG 132
+D+ +K A Q P +P + L + L+ PP+ G+AFLLQG
Sbjct: 28 LDAALAKPAAQQPTWPADQAL-AXRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQG 86
Query: 133 GDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNG 192
GDCAE+F + +IR R LLQ VVL +G PVVKV R+AGQ+AKPRS + +
Sbjct: 87 GDCAETFXDNTEPHIRGNVRALLQXAVVLTYGASXPVVKVARIAGQYAKPRS---ADIDA 143
Query: 193 VKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWN 252
+ L SYRGD +NG A D +R DP RL+RAY ++A NL+RA + G A++ V WN
Sbjct: 144 LGLRSYRGDXINGFAPDAAAREHDPSRLVRAYANASAAXNLVRALTSSGLASLHLVHDWN 203
Query: 253 LDFT 256
+F
Sbjct: 204 REFV 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,571,554
Number of Sequences: 62578
Number of extensions: 295844
Number of successful extensions: 725
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 715
Number of HSP's gapped (non-prelim): 7
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)